BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011902
         (475 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359474405|ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Vitis vinifera]
          Length = 638

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 301/467 (64%), Positives = 377/467 (80%), Gaps = 6/467 (1%)

Query: 5   SLSRILSSSVNIKNSKIFALHFTTA-SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVI 63
           S+SR+L  S+  KN      +F+TA S AE++YTHLQK  +NIEKTL  V+AKLDS+CV 
Sbjct: 5   SVSRLLPYSIRHKNP-----NFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVN 59

Query: 64  EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE 123
           EVL+RC  +QSQ+G+RFFIWA +QS YRHSS++Y++ACE+ RI QNP  IIDV+EAY+ E
Sbjct: 60  EVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVE 119

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G VVSVK   V+ +L  +A+LA+EA+W+L+KM EF++R DT+ YN+VIRLFCEKGDM  A
Sbjct: 120 GTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLA 179

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             LMK MGLIDLYP++ITYV+MIKGFCN GRLEDAC LFKVMK HGC+ N+V Y+ +LDG
Sbjct: 180 AGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDG 239

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +CR GS+ERALELLGEMEKE GDCSPNVVTYTS+IQ  C KG + EAL ILDRM A GCA
Sbjct: 240 VCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCA 299

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PNRVT+S L+KGFC EG ++EA++LIDKVVAGG+VS G CYSSL+V LV  K L+EAEKL
Sbjct: 300 PNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKL 359

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F +MLA+ VKPDGLAC  +I+ LCL G+VL+GF L+++ E +  LS +DSDI+S+LL+GL
Sbjct: 360 FRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLDSDIYSILLVGL 419

Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            +K HSVEA KLAR M+ + I L+ PY D IVEHLK+SGD+E++  L
Sbjct: 420 SQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEIVMYL 466


>gi|296084709|emb|CBI25851.3| unnamed protein product [Vitis vinifera]
          Length = 528

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 301/467 (64%), Positives = 377/467 (80%), Gaps = 6/467 (1%)

Query: 5   SLSRILSSSVNIKNSKIFALHFTTA-SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVI 63
           S+SR+L  S+  KN      +F+TA S AE++YTHLQK  +NIEKTL  V+AKLDS+CV 
Sbjct: 11  SVSRLLPYSIRHKNP-----NFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVN 65

Query: 64  EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE 123
           EVL+RC  +QSQ+G+RFFIWA +QS YRHSS++Y++ACE+ RI QNP  IIDV+EAY+ E
Sbjct: 66  EVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVE 125

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G VVSVK   V+ +L  +A+LA+EA+W+L+KM EF++R DT+ YN+VIRLFCEKGDM  A
Sbjct: 126 GTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLA 185

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             LMK MGLIDLYP++ITYV+MIKGFCN GRLEDAC LFKVMK HGC+ N+V Y+ +LDG
Sbjct: 186 AGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDG 245

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +CR GS+ERALELLGEMEKE GDCSPNVVTYTS+IQ  C KG + EAL ILDRM A GCA
Sbjct: 246 VCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCA 305

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PNRVT+S L+KGFC EG ++EA++LIDKVVAGG+VS G CYSSL+V LV  K L+EAEKL
Sbjct: 306 PNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKL 365

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F +MLA+ VKPDGLAC  +I+ LCL G+VL+GF L+++ E +  LS +DSDI+S+LL+GL
Sbjct: 366 FRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLDSDIYSILLVGL 425

Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            +K HSVEA KLAR M+ + I L+ PY D IVEHLK+SGD+E+ T+ 
Sbjct: 426 SQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEICTHF 472


>gi|255581311|ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528920|gb|EEF30916.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 518

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 290/470 (61%), Positives = 375/470 (79%), Gaps = 1/470 (0%)

Query: 5   SLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIE 64
           SL R LS S+  K SKI  LHFTT S A++ YTHLQ NPNN+EK+L ++K KLD+ CV E
Sbjct: 5   SLPRFLSLSIAPKTSKISTLHFTT-SLADKLYTHLQNNPNNVEKSLNSIKPKLDTRCVTE 63

Query: 65  VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEG 124
           VLH+C  + SQ+G+RFF+WA  QS+YRHSSF+Y++AC++  IKQNP  ++D+ E Y+ E 
Sbjct: 64  VLHKCSLNNSQIGLRFFVWAGYQSNYRHSSFLYSKACKLFNIKQNPQAVLDLFEFYRAEK 123

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CVV++K  KV+ NLC++  LANEA  VLRKM EFD++ DT  Y  VIRLFC+KGDM  A 
Sbjct: 124 CVVNLKTFKVVLNLCKEGTLANEAFLVLRKMQEFDIQADTKAYTIVIRLFCDKGDMDMAQ 183

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +LM  M   DLYPD++TYVS+IKGFC+ GRLE+AC L K M+ HGC  N+V YS L+DGI
Sbjct: 184 KLMGEMSFNDLYPDMVTYVSIIKGFCDIGRLEEACRLVKEMRAHGCVPNVVVYSTLVDGI 243

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           CR GS+ERALELLG MEKEGGDC+PNV+TYTSVIQ  C KG   +A  +LDRMEA GCAP
Sbjct: 244 CRFGSVERALELLGGMEKEGGDCNPNVLTYTSVIQGLCEKGRTMDAFAVLDRMEACGCAP 303

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           NRVT+STL+K  C++G+L+EAY+LID+VVAGGSVSS  CYS +VV L+R K+++EAEKLF
Sbjct: 304 NRVTVSTLLKRLCMDGHLEEAYKLIDRVVAGGSVSSCDCYSPIVVCLIRIKKVEEAEKLF 363

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            + + SGVKPDGLACS+MI+ELC   +VL+G+CL+++IEKIG LS++DSD +SVLL+GLC
Sbjct: 364 RRAVVSGVKPDGLACSLMIKELCFVNRVLDGYCLHDEIEKIGSLSTIDSDTYSVLLVGLC 423

Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
           ++ +S+EAAKLAR +++KRI L+ PYVDK+VE++KK G  +L+T L  IG
Sbjct: 424 QQGYSLEAAKLARSLIEKRIHLKHPYVDKVVEYMKKFGVTDLVTELASIG 473


>gi|224137884|ref|XP_002326464.1| predicted protein [Populus trichocarpa]
 gi|222833786|gb|EEE72263.1| predicted protein [Populus trichocarpa]
          Length = 476

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 274/471 (58%), Positives = 350/471 (74%), Gaps = 1/471 (0%)

Query: 1   MPRFSLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKA-KLDS 59
           M  FSL+R  + S+  K  KI  LHF T S  E+   HLQ +PNN+EKTL ++   KLD+
Sbjct: 1   MSLFSLTRHFTFSIKPKTPKISTLHFATTSLGEKLDAHLQNSPNNVEKTLNSLAPIKLDT 60

Query: 60  TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
             V +++HR   +  Q+G+RFFIWA  Q +YRH+ ++YN+AC + +IKQNP +I+D++E 
Sbjct: 61  KYVNDIIHRWSLNNLQLGLRFFIWAGDQPNYRHNLYIYNKACSLFKIKQNPQVILDLIET 120

Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           YK E CVV V   KV+  LC+   LA+EA+ VL+KMPEF++RPDT  YN VIR  CEKGD
Sbjct: 121 YKLEKCVVCVDTFKVVLRLCKAGGLADEALMVLKKMPEFNIRPDTTAYNVVIRSLCEKGD 180

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           +  A +LM  MGLIDLYPD+ITYVSMIKGFC+ GRLE+A  LF VM  HGC  N+VAYSA
Sbjct: 181 VDMAKKLMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSA 240

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           LLDGICR G +ERA ELL EMEK+G  C PNV+TYTSVIQ FC +G  K+AL +L+ ME 
Sbjct: 241 LLDGICRFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQGRTKDALSVLELMEV 300

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            GCAPNRVT S  I G C  G L + Y  I+++VAGGSVS G CYSSLVV L++ K+++E
Sbjct: 301 RGCAPNRVTASAWINGICTNGQLQDVYNFIERIVAGGSVSIGDCYSSLVVCLIKIKKVEE 360

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           AEK F + L+SG+KPD LACS+MIRE+C   +VL+GFCLYE++EK G LSS+D DI+S+L
Sbjct: 361 AEKTFRRALSSGMKPDSLACSMMIREICSEKRVLDGFCLYEEVEKTGCLSSIDIDIYSIL 420

Query: 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           L GLC++ HS EAA+LAR ML+KRI L+ P+V+KIVEHLK  G +EL+  L
Sbjct: 421 LAGLCQQGHSAEAARLARSMLEKRIPLRAPHVEKIVEHLKNFGGKELVAEL 471


>gi|449442465|ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Cucumis sativus]
 gi|449505643|ref|XP_004162530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Cucumis sativus]
          Length = 475

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 269/473 (56%), Positives = 354/473 (74%)

Query: 1   MPRFSLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDST 60
           M  F +S   SSS  +  S +   H  T S ++ FY HL+K+  N++KTLAT+K KLDS 
Sbjct: 1   MALFRISCPRSSSFLLNISTLSTFHLNTLSSSDLFYDHLEKSNGNLDKTLATLKTKLDSR 60

Query: 61  CVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAY 120
           CV EVL++C    SQMG+RFFIWA  Q +YRHSSFMY+RACE+  I  +P ++ +V+E Y
Sbjct: 61  CVNEVLYKCSFELSQMGLRFFIWAGRQPNYRHSSFMYSRACELIGINVSPCLLFNVIEDY 120

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           + EGC+V ++M K+I NLC++A+LA EA+ +LRKM EF LR DT +YN VIRLF EKG+M
Sbjct: 121 RREGCLVDIRMFKIILNLCKEAKLAKEALSILRKMSEFHLRADTTMYNLVIRLFTEKGEM 180

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A ELMK M  +D++P++ITY+SM+KGFC+ GR EDA GLFK MK +GCA N V YS L
Sbjct: 181 DKAMELMKEMDSVDIHPNMITYISMLKGFCDVGRWEDAYGLFKDMKENGCAPNTVVYSVL 240

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++G  RL  M+R +E+L EMEK+GG CSPN VTYTS+IQ  C +G   EAL +LDRME  
Sbjct: 241 VNGAIRLRIMDRLMEMLKEMEKQGGTCSPNTVTYTSIIQSLCEEGHPLEALKVLDRMEEY 300

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G APNRV +S L+K FC +G+++EAY+LID+VVA G VS G CYSSLVV LV+ K++ EA
Sbjct: 301 GYAPNRVAVSFLVKEFCKDGHVEEAYKLIDRVVARGGVSYGDCYSSLVVTLVKMKKIAEA 360

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           EKLF  MLA+GVKPDG+ACS+MIRELCL  +VL+GF L  ++++ G+L S+D+DI+S+LL
Sbjct: 361 EKLFRNMLANGVKPDGVACSLMIRELCLEERVLDGFNLCYEVDRNGYLCSIDADIYSLLL 420

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473
           +GLC  +HSV+AAKLAR MLKK I L+  Y + I++HLKK  D EL+ +L  I
Sbjct: 421 VGLCEHDHSVDAAKLARLMLKKGIRLKPHYAESIIKHLKKFEDRELVMHLGGI 473


>gi|297790927|ref|XP_002863348.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309183|gb|EFH39607.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 477

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/470 (54%), Positives = 337/470 (71%), Gaps = 6/470 (1%)

Query: 6   LSRILSSSVNIKNSKIFALHF-TTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIE 64
           +SR+L  S+    SKI AL F TT S A+R Y HLQ   +N EK LA+    LDS+ + E
Sbjct: 6   ISRLLPPSLLSHPSKISALRFSTTVSAADRLYGHLQGGTSNPEKDLASANVNLDSSSINE 65

Query: 65  VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEG 124
           V+ RC P+Q Q+G+RFFIWA  QSS+RHS +MY +AC+  +I+ NP +I DVVEAYK+E 
Sbjct: 66  VIRRCDPNQFQLGLRFFIWAGTQSSHRHSPYMYTKACDFLKIRANPDLIKDVVEAYKKEE 125

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C VSVK M ++  LC +A+LA+EA+WVLRK PEFDL  DT+ YN VIRLF +KGD+  AD
Sbjct: 126 CFVSVKTMWIVLTLCNQAKLADEALWVLRKFPEFDLCADTVAYNLVIRLFADKGDLSMAD 185

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            LMK M  +DLYPD+ITY +MI G+CNAG++++A  L K M +H C  N V YS +L+G+
Sbjct: 186 MLMKEMDCVDLYPDVITYTAMINGYCNAGKIDEAWKLAKEMSKHDCVLNTVTYSRILEGV 245

Query: 245 CRLGSMERALELLGEMEKE--GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           C+ G ME ALELL EMEKE  GG  SPN VTYT VIQ FC K  ++EAL +LDRM   GC
Sbjct: 246 CKSGDMETALELLAEMEKEDGGGLISPNAVTYTLVIQSFCEKKRIREALLVLDRMGDRGC 305

Query: 303 APNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
            PNRVT S LI+G  +E + D  +  +LIDK+V  G VS   C+SS  V L+R KR +EA
Sbjct: 306 TPNRVTASVLIQGV-LENDEDVKDLSKLIDKLVKLGGVSLSECFSSATVSLIRMKRWEEA 364

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           EK+F  ML  G++PDGLAC+ + RELCL  + L+ F LY++IEK    S++DSDI++VLL
Sbjct: 365 EKIFRLMLVRGIRPDGLACTHVFRELCLSERYLDCFVLYQEIEKEDVKSTMDSDIYAVLL 424

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           LGLC++ +S EAAKLA+ ML K++ L+  +V+KI+E LKK+GDE+L++  
Sbjct: 425 LGLCQQGNSWEAAKLAKSMLDKKMRLKVSHVEKIIEALKKTGDEDLMSRF 474


>gi|357469235|ref|XP_003604902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505957|gb|AES87099.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 449

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/437 (54%), Positives = 325/437 (74%), Gaps = 2/437 (0%)

Query: 29  ASPAERFYTHLQK-NPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQ 87
           +S A+  YTHL K N   IE  L+  K KLDS CVI+VL++CFP QSQ+G+RFFIWA  Q
Sbjct: 4   SSIADTLYTHLNKTNGITIENALSKTKPKLDSQCVIQVLNKCFPKQSQLGVRFFIWAGFQ 63

Query: 88  SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
           S YRHS +MY + C +  I +NP II DV++AY+ +GCVV+V M + +  LC++A   + 
Sbjct: 64  SGYRHSGYMYRKVCNLFEIDKNPEIICDVIKAYEVDGCVVNVNMFREVLKLCKEAENVDL 123

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
            +WVLRKM +F+++PDT++YN VI+L C++GD+   ++LMK M L  + PD+ITY++MI+
Sbjct: 124 GLWVLRKMEDFEMKPDTVMYNVVIKLVCKQGDVEMGEKLMKDMSLNGICPDLITYMTMIE 183

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C+AGRLE+A  + KVM+ +GC+ N V  SA+LDG+CRL SMERALELL EMEK  GDC
Sbjct: 184 GLCSAGRLEEAYEMVKVMRGNGCSPNSVVLSAVLDGLCRLDSMERALELLDEMEK-SGDC 242

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PNVVTYTS+IQ FC +G   EAL ILDRM A GC  N VT+ TLI+  C EG +DEAY+
Sbjct: 243 CPNVVTYTSLIQSFCKRGEWTEALNILDRMRAFGCFANHVTVFTLIESLCTEGRVDEAYK 302

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           ++DK+V    VS G CY+SLV+  +R K+L+ AE LF +MLA+ +KPD LA S++++ELC
Sbjct: 303 VVDKLVVEHCVSRGDCYNSLVISFIRVKKLEGAENLFKEMLAAEIKPDTLASSLLLKELC 362

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
           L  +VL+GF L + IE +GFLSS+DSDI+S++L+GL +KNH  EA KLA+ MLKK I L+
Sbjct: 363 LKDRVLDGFYLLDTIENMGFLSSIDSDIYSIMLIGLWQKNHLTEATKLAKIMLKKAIPLR 422

Query: 448 GPYVDKIVEHLKKSGDE 464
            PY D+ ++ L+K G++
Sbjct: 423 PPYKDRAIDILRKYGEK 439


>gi|15238076|ref|NP_199547.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180684|sp|Q9LVS3.1|PP422_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g47360
 gi|8809619|dbj|BAA97170.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008119|gb|AED95502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/473 (53%), Positives = 339/473 (71%), Gaps = 6/473 (1%)

Query: 1   MPRFSLSRILSSSVNIKNSKIFALHF-TTASPAERFYTHLQKNPNNIEKTLATVKAKLDS 59
           MP   +SR++S S+  + SKI AL F TT S AER Y  LQ   +N+EK LA+   +LDS
Sbjct: 1   MPNSLISRLVSPSLRSQPSKISALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDS 60

Query: 60  TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
           +C+ EVL RC P+Q Q G+RFFIWA   SS+RHS++MY +AC++ +I+  P +I  V+E+
Sbjct: 61  SCINEVLRRCDPNQFQSGLRFFIWAGTLSSHRHSAYMYTKACDILKIRAKPDLIKYVIES 120

Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           Y++E C V+VK M+++  LC +A LA+EA+WVLRK PEF++  DT+ YN VIRLF +KGD
Sbjct: 121 YRKEECFVNVKTMRIVLTLCNQANLADEALWVLRKFPEFNVCADTVAYNLVIRLFADKGD 180

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           +  AD L+K M  + LYPD+ITY SMI G+CNAG+++DA  L K M +H C  N V YS 
Sbjct: 181 LNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSR 240

Query: 240 LLDGICRLGSMERALELLGEMEKE--GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           +L+G+C+ G MERALELL EMEKE  GG  SPN VTYT VIQ FC K  ++EAL +LDRM
Sbjct: 241 ILEGVCKSGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRM 300

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
              GC PNRVT   LI+G  +E + D     +LIDK+V  G VS   C+SS  V L+R K
Sbjct: 301 GNRGCMPNRVTACVLIQGV-LENDEDVKALSKLIDKLVKLGGVSLSECFSSATVSLIRMK 359

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R +EAEK+F  ML  GV+PDGLACS + RELCL  + L+ F LY++IEK    S++DSDI
Sbjct: 360 RWEEAEKIFRLMLVRGVRPDGLACSHVFRELCLLERYLDCFLLYQEIEKKDVKSTIDSDI 419

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
           H+VLLLGLC++ +S EAAKLA+ ML K++ L+  +V+KI+E LKK+GDE+L++
Sbjct: 420 HAVLLLGLCQQGNSWEAAKLAKSMLDKKMRLKVSHVEKIIEALKKTGDEDLMS 472


>gi|147792816|emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera]
          Length = 577

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/370 (62%), Positives = 290/370 (78%), Gaps = 14/370 (3%)

Query: 5   SLSRILSSSVNIKNSKIFALHFTTA-SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVI 63
           S+SR+L  S+  KN      +F+TA SPAE++YTHLQK  +NIEKTL  V+AKLDS+CV 
Sbjct: 5   SVSRLLPYSIRHKNP-----NFSTALSPAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVN 59

Query: 64  EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE 123
           EVL+RC  +QSQ+G+RFFIWA +QS YRHSS++Y++ACE+ RI QNP  IIDV+EAY+ E
Sbjct: 60  EVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVE 119

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G VVSVK   V+ +L  +A+LA+EA+W+L+KM EF++R DT+ YN+VIRLFCEKGDM  A
Sbjct: 120 GTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLA 179

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             LMK MGLIDLYP++ITYV+MIKGFCN GRLEDAC LFKVMK HGC+ N+V Y+ +LDG
Sbjct: 180 AGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDG 239

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +CR GS+ERALELLGEMEKE GDCSPNVVTYTS+IQ  C KG + EAL ILDRM A GCA
Sbjct: 240 VCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCA 299

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PNRVT+S L+KGFC EG ++EA++LIDKVVAGG+VS  G        L + +   EA KL
Sbjct: 300 PNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYVG--------LSQKRHSVEAVKL 351

Query: 364 FSKMLASGVK 373
              M+  G++
Sbjct: 352 ARLMVDRGIQ 361



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 130/247 (52%), Gaps = 22/247 (8%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           ++A  + K M      A+ VAY++++   C  G M+ A  L+ EM     D  PN++TY 
Sbjct: 142 DEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLI--DLYPNMITYV 199

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           ++I+ FC  G +++A  +   M+  GC+PN V  + ++ G C  G+L+ A +L+ ++   
Sbjct: 200 TMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEM--- 256

Query: 336 GSVSSGGC------YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
               SG C      Y+S++       +L EA ++  +M A G  P+ +  S++++  C  
Sbjct: 257 -EKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAPNRVTVSILMKGFCAE 315

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449
           G+V E F L + +   G +S V          GL +K HSVEA KLAR M+ + I L+ P
Sbjct: 316 GRVEEAFKLIDKVVAGGNVSYV----------GLSQKRHSVEAVKLARLMVDRGIQLKTP 365

Query: 450 YVDKIVE 456
           Y D IVE
Sbjct: 366 YFDSIVE 372


>gi|356523566|ref|XP_003530408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Glycine max]
          Length = 475

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 239/466 (51%), Positives = 328/466 (70%), Gaps = 11/466 (2%)

Query: 18  NSKIFALHFTTASPAERFYT-------HLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCF 70
           N ++F    T  + A  F T       HL ++  ++E +L+ VK KLDS  +I+VL+ C 
Sbjct: 6   NFQLFLPFHTLKTKALPFSTLIDVLCSHLHQSNGSVEHSLSKVKPKLDSQSIIQVLNTCR 65

Query: 71  --PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS 128
             P Q Q+G+RFF+WA  QS YRHSS+MY +A  + RI  NP II DV+E+Y+ EG +V+
Sbjct: 66  DRPYQPQLGVRFFVWAGFQSGYRHSSYMYTKASYLLRIHHNPQIIRDVIESYEAEGSLVT 125

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           V M + +  LC++A+LA+ A+WVLRKM + F+L  DT++YN VIRL C+KGD+  A +L 
Sbjct: 126 VNMFREVLKLCKEAQLADMALWVLRKMEDTFNLHADTVMYNLVIRLCCKKGDIETALKLT 185

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M    L PD+ITY+++++GF NAGR E+A  + KVM+ HGC+ NLV  SA+LDG CR 
Sbjct: 186 SEMSSNGLCPDLITYMAIVEGFSNAGRSEEAYSVLKVMRLHGCSPNLVILSAILDGFCRS 245

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           GSMERALELL EMEK GG C+PNVVTYTSVIQ FC +G  KEAL ILDRM+A GC  N V
Sbjct: 246 GSMERALELLDEMEK-GGVCTPNVVTYTSVIQSFCKRGQWKEALDILDRMKAFGCHANHV 304

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T+ TL++  C +G++++ Y L DK V    VS G  YSSLV+ L+R K+L+EAEKLF +M
Sbjct: 305 TVFTLVESLCADGHVEQGYGLFDKFVVEHCVSYGDFYSSLVISLIRIKKLEEAEKLFKEM 364

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           LA  V+ D LA S++++ELC+  ++L+GF L E IE  G LSS+DSDI+S+LL+GLC+++
Sbjct: 365 LAGDVRLDTLASSLLLKELCMKDRILDGFYLLEAIENKGCLSSIDSDIYSILLIGLCQRS 424

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473
           H  EA KLA+ MLKK + LQ P+ D  ++ L KSG+++L+  L  I
Sbjct: 425 HLKEATKLAKIMLKKSVLLQPPHKDAAIDILIKSGEKDLVNQLTGI 470


>gi|356555246|ref|XP_003545945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Glycine max]
          Length = 617

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/458 (50%), Positives = 312/458 (68%), Gaps = 32/458 (6%)

Query: 17  KNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQM 76
           K +KI  L F+T    +   +HL ++  ++E +L+ VK KLDS  +I+VL+ C P   Q+
Sbjct: 186 KKNKISTLPFSTL--VDILCSHLHQSNGSVENSLSMVKPKLDSQSIIQVLNTCPP---QL 240

Query: 77  GIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136
           G+RFF+WA  QS YRHSS+MY +A  + RI  NP II DV+E+Y+ EG +V+V M + + 
Sbjct: 241 GVRFFVWAGFQSGYRHSSYMYTKASNLLRIHHNPQIIRDVIESYEAEGSLVTVNMFREVL 300

Query: 137 NLCEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
            LC++ARLA+ A+WVLRKM + F+L  DT++YN VIRL C+KGD+  A +L   M   DL
Sbjct: 301 KLCKEARLADMALWVLRKMEDTFNLHADTVMYNLVIRLCCKKGDIETALKLTSEMSSNDL 360

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            PD+ITY+++++GF NAGR E+A  + KVM+ HGC+ NLV  SA+LDG CR GSMERALE
Sbjct: 361 CPDLITYMAIVEGFSNAGRSEEAYSVLKVMRLHGCSPNLVILSAILDGFCRSGSMERALE 420

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           LL EMEK GG C+PNVVTYTSVIQ FC +G  KEAL ILDRM+A GC  N          
Sbjct: 421 LLDEMEK-GGVCTPNVVTYTSVIQSFCKRGQWKEALDILDRMKAFGCHANH--------- 470

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
                     YQ I        +  G  Y+SLV+ L+R K+L+EAEKLF +MLA  V+ D
Sbjct: 471 --------HNYQYI--------LEHGDFYNSLVISLIRIKKLEEAEKLFKEMLAGDVRLD 514

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            LA S++++ELC+  Q+L+GF L E IE  GFLSS+DSDI+S+LL+GLC+++H  EA KL
Sbjct: 515 TLASSLLLKELCMKDQILDGFYLLEAIENKGFLSSIDSDIYSILLIGLCQRSHLKEATKL 574

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473
           A+ MLKK + L+ P+ D  ++ L K G+++L+  L  I
Sbjct: 575 AKIMLKKSVLLRPPHKDAAIDILIKFGEKDLVNQLTGI 612


>gi|227463012|gb|ACP39958.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463014|gb|ACP39959.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 288

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 183/288 (63%), Positives = 233/288 (80%), Gaps = 1/288 (0%)

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           MK +GLIDLYPD++TY +MIKGFCNAGRLE+AC LF+ MK  G + N V YS LL+GIC+
Sbjct: 1   MKEIGLIDLYPDMMTYFAMIKGFCNAGRLEEACELFQAMKGQGFSPNAVTYSVLLEGICK 60

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
             S E+ALELLGEMEK GG+CSPNV+TYTS+I+ FC KG   EAL ILDRMEA  C PNR
Sbjct: 61  YRSTEKALELLGEMEKAGGNCSPNVITYTSMIKSFCEKGQTIEALRILDRMEACQCVPNR 120

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           +T+ TLI G C +G+++EAY+LID+ VAG  VS+  CYSSLV+ L+R  RL EAEKLF K
Sbjct: 121 ITVITLITGLCTKGHVEEAYKLIDR-VAGRGVSNSDCYSSLVLALIRINRLNEAEKLFRK 179

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           ML SG KP G+ACS MIRE+C  G+VL+GFCLY +IE++ ++SS+D+DI+S+LL+GLCR+
Sbjct: 180 MLVSGAKPSGIACSTMIREICHEGRVLDGFCLYNEIERMQYISSIDTDIYSILLVGLCRQ 239

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
           +HSVEA KLAR ML++RI L+ PYVD+I++HLK S D+EL+T L +I 
Sbjct: 240 SHSVEAVKLARLMLRRRIRLEAPYVDEIIKHLKNSTDKELVTQLSRIA 287



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 104/216 (48%), Gaps = 9/216 (4%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIR 172
           ++ +A K +G   +     V+     K R   +A+ +L +M +   +  P+ I Y ++I+
Sbjct: 34  ELFQAMKGQGFSPNAVTYSVLLEGICKYRSTEKALELLGEMEKAGGNCSPNVITYTSMIK 93

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            FCEKG  I A  ++  M      P+ IT +++I G C  G +E+A  L   +   G  +
Sbjct: 94  SFCEKGQTIEALRILDRMEACQCVPNRITVITLITGLCTKGHVEEAYKLIDRVAGRG-VS 152

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   YS+L+  + R+  +  A +L  +M   G    P+ +  +++I+  C +G + +   
Sbjct: 153 NSDCYSSLVLALIRINRLNEAEKLFRKMLVSGA--KPSGIACSTMIREICHEGRVLDGFC 210

Query: 293 I---LDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +   ++RM+ +      +  S L+ G C + +  EA
Sbjct: 211 LYNEIERMQYISSIDTDI-YSILLVGLCRQSHSVEA 245


>gi|89257471|gb|ABD64962.1| PPR repeat containing protein [Brassica oleracea]
          Length = 345

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 185/342 (54%), Positives = 248/342 (72%), Gaps = 3/342 (0%)

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
           M+++ +LC +A+LA+EA+WVLRK PEFDL  DT+ YN VIRLF +KGD+    +LM+ M 
Sbjct: 1   MRIVLSLCSQAKLADEALWVLRKFPEFDLSADTVAYNVVIRLFADKGDLSMGMKLMEEME 60

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
            IDL PD++TY S+I GFCNAG++++A  L K M  HGC  N V YS +L+G+C+ G ME
Sbjct: 61  SIDLSPDVMTYTSLINGFCNAGKVDEAWKLAKGMSEHGCVLNTVTYSRILEGVCKCGEME 120

Query: 252 RALELLGEMEKE--GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           RALELL EMEKE  GG  SPN VTYT VIQ F  K  ++EAL +LDRM   GC+PNRVT 
Sbjct: 121 RALELLTEMEKEEDGGFISPNAVTYTLVIQAFVEKKRVQEALMVLDRMGDRGCSPNRVTA 180

Query: 310 STLIKGFCVEG-NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
           S LI+G    G ++ +  +LIDK+V  G VS    +SS  V L+R KR +EAEK+F  ML
Sbjct: 181 SVLIQGVLENGEDVKDLSKLIDKLVKLGGVSLSEFFSSATVSLIRLKRWEEAEKMFRLML 240

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G++PDGLACS+++RELCL  +  + F LYE+IEK+  +S++D+D+HSVLLLGLC +  
Sbjct: 241 VRGIRPDGLACSLVLRELCLLERYHDCFLLYEEIEKVDVVSTIDTDVHSVLLLGLCEQGR 300

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           S EAAKLA+ ML K++ L+   V+KI++ LKK+GDE+L+  L
Sbjct: 301 SWEAAKLAKSMLDKKMRLKVSQVEKIIQALKKTGDEDLMRRL 342


>gi|414865614|tpg|DAA44171.1| TPA: hypothetical protein ZEAMMB73_462017 [Zea mays]
          Length = 472

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 129/339 (38%), Positives = 192/339 (56%), Gaps = 7/339 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++ N+   A L   ++ VLR M  FDL P    +++ +R      D+ A  E+M   G  
Sbjct: 127 LLLNISAHASLFPASLAVLRHMRSFDLVPSAACFHHALRAAGSASDVSAVLEIMSASGAC 186

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P +   V+ +    +AG  E A  L   M   GC  N V Y+A+LDG+C  G+++ A
Sbjct: 187 ---PTVPVIVAAVHKLASAGEFEVAYRLIDKMPEFGCVPNAVVYTAVLDGMCSFGNVDAA 243

Query: 254 LELLGEMEKE--GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
           L L+  ME    G +C+P VVTYT +++  CGKG   EAL +LDRM      PNRV + T
Sbjct: 244 LRLMKAMEGSEFGANCAPTVVTYTCLVKCLCGKGRAVEALAVLDRMTERRVMPNRVFMRT 303

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           L++GFC E  + +AY ++++V+  GSVSS  CY+ L+V L +    +EAE L   M+  G
Sbjct: 304 LVEGFCTEQRVVDAYDVVERVIGDGSVSSTQCYNVLLVSLWKVGMGEEAEGLARMMMTKG 363

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           V+   LA S M+RELC+  + L+       IE+ G L   DSD++  LLLGLC + H  E
Sbjct: 364 VQLTPLAGSCMVRELCIRKRSLDACYWLGVIEENGVL--CDSDVYGTLLLGLCEEGHIHE 421

Query: 432 AAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           A+ L R ++ + I ++    D++VE LK+ GDEEL +N+
Sbjct: 422 ASTLGRKVVDRGILIELSCADRLVELLKQYGDEELASNI 460


>gi|219363671|ref|NP_001136913.1| uncharacterized protein LOC100217071 [Zea mays]
 gi|194697592|gb|ACF82880.1| unknown [Zea mays]
          Length = 325

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/318 (38%), Positives = 181/318 (56%), Gaps = 7/318 (2%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M  FDL P    +++ +R      D+ A  E+M   G     P +   V+ +    +AG 
Sbjct: 1   MRSFDLVPSAACFHHALRAAGSASDVSAVLEIMSASGAC---PTVPVIVAAVHKLASAGE 57

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE--GGDCSPNVV 272
            E A  L   M   GC  N V Y+A+LDG+C  G+++ AL L+  ME    G +C+P VV
Sbjct: 58  FEVAYRLIDKMPEFGCVPNAVVYTAVLDGMCSFGNVDAALRLMKAMEGSEFGANCAPTVV 117

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TYT +++  CGKG   EAL +LDRM      PNRV + TL++GFC E  + +AY ++++V
Sbjct: 118 TYTCLVKCLCGKGRAVEALAVLDRMTERRVMPNRVFMRTLVEGFCTEQRVVDAYDVVERV 177

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +  GSVSS  CY+ L+V L +    +EAE L   M+  GV+   LA S M+RELC+  + 
Sbjct: 178 IGDGSVSSTQCYNVLLVSLWKVGMGEEAEGLARMMMTKGVQLTPLAGSCMVRELCIRKRS 237

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452
           L+       IE+ G L   DSD++  LLLGLC + H  EA+ L R ++ + I ++    D
Sbjct: 238 LDACYWLGVIEENGVLC--DSDVYGTLLLGLCEEGHIHEASTLGRKVVDRGILIELSCAD 295

Query: 453 KIVEHLKKSGDEELITNL 470
           ++VE LK+ GDEEL +N+
Sbjct: 296 RLVELLKQYGDEELASNI 313



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 11/288 (3%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           R   + S +  V+E     G   +V ++    +    A     A  ++ KMPEF   P+ 
Sbjct: 18  RAAGSASDVSAVLEIMSASGACPTVPVIVAAVHKLASAGEFEVAYRLIDKMPEFGCVPNA 77

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDL----YPDIITYVSMIKGFCNAGRLEDACG 220
           ++Y  V+   C  G++ AA  LMK M   +      P ++TY  ++K  C  GR  +A  
Sbjct: 78  VVYTAVLDGMCSFGNVDAALRLMKAMEGSEFGANCAPTVVTYTCLVKCLCGKGRAVEALA 137

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +   M       N V    L++G C   + +R ++    +E+  GD S +     +V+ +
Sbjct: 138 VLDRMTERRVMPNRVFMRTLVEGFC---TEQRVVDAYDVVERVIGDGSVSSTQCYNVLLV 194

Query: 281 FCGK-GMMKEALGILDRMEALGCAPNRVTISTLIKGFCV-EGNLDEAYQLIDKVVAGGSV 338
              K GM +EA G+   M   G     +  S +++  C+ + +LD  Y L   +   G +
Sbjct: 195 SLWKVGMGEEAEGLARMMMTKGVQLTPLAGSCMVRELCIRKRSLDACYWL-GVIEENGVL 253

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
                Y +L++ L     + EA  L  K++  G+  + L+C+  + EL
Sbjct: 254 CDSDVYGTLLLGLCEEGHIHEASTLGRKVVDRGILIE-LSCADRLVEL 300


>gi|242036445|ref|XP_002465617.1| hypothetical protein SORBIDRAFT_01g042330 [Sorghum bicolor]
 gi|241919471|gb|EER92615.1| hypothetical protein SORBIDRAFT_01g042330 [Sorghum bicolor]
          Length = 325

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/321 (38%), Positives = 184/321 (57%), Gaps = 7/321 (2%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M  F L P    +++ +R     GD+ A  E+M G G     P +   V+ +    + G 
Sbjct: 1   MRSFGLVPGAACFHHALRAAGSAGDVSAVLEIMSGSGAC---PTVPVIVAAVHKLASVGD 57

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE--GGDCSPNVV 272
            E A  L   M   GC  N V Y+A+LDG+C  G+++ AL L+  ME    G +C+P VV
Sbjct: 58  FEVAYRLIDKMPEFGCVPNAVVYTAVLDGMCSFGNVDAALRLMEAMEGSEFGANCAPTVV 117

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TYT +++  CGKG + EAL +LDRM   G  PNRV + TL++GFC E  + EAY ++++V
Sbjct: 118 TYTCLVKCLCGKGRVAEALAVLDRMAERGVMPNRVFMRTLVEGFCTEQRVVEAYDVVERV 177

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +  GSVSS  CY+ L+V L +    +EAE L  +M+  GV+   LA S M+RELC   + 
Sbjct: 178 IGDGSVSSTQCYNVLLVSLWKVGMEEEAEGLAQRMMKKGVQLTPLAGSSMVRELCGRKRS 237

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452
           L+       +E+ G L   DSD++  LLLGLC   H  EA+ L R ++ + I ++    D
Sbjct: 238 LDACYWLGLMEENGVLC--DSDVYGSLLLGLCEDGHIHEASTLGRKVVDRGILIEVSCAD 295

Query: 453 KIVEHLKKSGDEELITNLPKI 473
           ++V+ LK+ GDEEL +++ ++
Sbjct: 296 RLVKLLKQYGDEELASHILRL 316



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 10/231 (4%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL----YPDIITYV 203
           A  ++ KMPEF   P+ ++Y  V+   C  G++ AA  LM+ M   +      P ++TY 
Sbjct: 61  AYRLIDKMPEFGCVPNAVVYTAVLDGMCSFGNVDAALRLMEAMEGSEFGANCAPTVVTYT 120

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            ++K  C  GR+ +A  +   M   G   N V    L++G C   + +R +E    +E+ 
Sbjct: 121 CLVKCLCGKGRVAEALAVLDRMAERGVMPNRVFMRTLVEGFC---TEQRVVEAYDVVERV 177

Query: 264 GGDCSPNVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAPNRVTISTLIKGFC-VEGN 321
            GD S +     +V+ +   K GM +EA G+  RM   G     +  S++++  C  + +
Sbjct: 178 IGDGSVSSTQCYNVLLVSLWKVGMEEEAEGLAQRMMKKGVQLTPLAGSSMVRELCGRKRS 237

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           LD  Y L   +   G +     Y SL++ L     + EA  L  K++  G+
Sbjct: 238 LDACYWL-GLMEENGVLCDSDVYGSLLLGLCEDGHIHEASTLGRKVVDRGI 287


>gi|115451663|ref|NP_001049432.1| Os03g0225300 [Oryza sativa Japonica Group]
 gi|24308623|gb|AAN52746.1| Unknown protein [Oryza sativa Japonica Group]
 gi|108706940|gb|ABF94735.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547903|dbj|BAF11346.1| Os03g0225300 [Oryza sativa Japonica Group]
 gi|125585458|gb|EAZ26122.1| hypothetical protein OsJ_09985 [Oryza sativa Japonica Group]
 gi|215695205|dbj|BAG90396.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 470

 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 212/397 (53%), Gaps = 15/397 (3%)

Query: 79  RFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL 138
           RF +W    SS       Y  +   + +   PS +  ++ +  +    + ++   ++  +
Sbjct: 75  RFLLWRLPPSSP--LPSSYALSSLAASLPDLPSAVPLLLSSSPQP---LPLRHYALLLGI 129

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
              A L   ++ +LR M  F L PD   + + +R     GD+ A   +M   G+    P 
Sbjct: 130 SAHAGLFPASLALLRHMRSFGLAPDAACFRSALRSAGSPGDVCAVLGIMSACGVSPSVPL 189

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++T V  +     AG    A  L + M   GC  N+  Y+ALLDG+C  G ++ AL L+ 
Sbjct: 190 VVTSVHKLA---TAGDFVGARQLIEKMPEFGCVTNVAVYTALLDGMCSFGDVDAALRLVE 246

Query: 259 EME--KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           EME    G  C PNVV+YT +++  CGK  M EAL +LDRM   G  PNRV + TL+ GF
Sbjct: 247 EMEGWSLGAGCVPNVVSYTCLVKCLCGKKRMGEALSLLDRMTGRGVMPNRVFVRTLVGGF 306

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C E  + +AY ++++VV+ GSVSS  CY+ L++ L R     EAE L  +M+  GV+   
Sbjct: 307 CSEEMVADAYAVVERVVSDGSVSSDQCYNVLLICLWRVGMDGEAEGLVQRMMKKGVRLSP 366

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           LA SVM+RELC   ++L+       +E+ G L   D+D+++ LLL LC + H  EA  LA
Sbjct: 367 LAASVMVRELCNRNRLLDACYWIGVMEENGVL--CDTDVYNGLLLRLCVEGHVGEALALA 424

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473
           + + ++ I ++    D++++ LK+ GDEEL    PKI
Sbjct: 425 KKVAERGILIEASCADRLMDLLKQYGDEELA---PKI 458


>gi|125542959|gb|EAY89098.1| hypothetical protein OsI_10586 [Oryza sativa Indica Group]
          Length = 470

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 212/397 (53%), Gaps = 15/397 (3%)

Query: 79  RFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL 138
           RF +W    SS       Y  +   + +   PS +  ++ +  +    + ++   ++  +
Sbjct: 75  RFLLWRLPPSSP--LPSSYALSSLAASLPDLPSAVPLLLSSSPQP---LPLRHYALLLGI 129

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
              A L   ++ +LR M  F L PD   + + +R     GD+ A   +M   G+    P 
Sbjct: 130 SAHAGLFPASLALLRHMRSFGLAPDAACFRSALRSAGSPGDVCAVLGIMSACGVSPSVPL 189

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++T V  +     AG    A  L + M   GC  N+  Y+ALLDG+C  G ++ AL L+ 
Sbjct: 190 VVTSVHKLA---TAGDFVGARQLIEKMPEFGCVTNVAVYTALLDGMCSFGDVDAALGLVE 246

Query: 259 EME--KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           EME    G  C PNVV+YT +++  CGK  M EAL +LDRM   G  PNRV + TL+ GF
Sbjct: 247 EMEGWSLGAGCVPNVVSYTCLVKCLCGKKRMGEALSLLDRMTGRGVMPNRVFVRTLVGGF 306

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C E  + +AY ++++VV+ GSVSS  CY+ L++ L R     EAE L  +M+  GV+   
Sbjct: 307 CSEEMVADAYAVVERVVSDGSVSSDQCYNVLLICLWRVGMDGEAEGLVQRMMKKGVRLSP 366

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           LA SVM+RELC   ++L+       +E+ G L   D+D+++ LLL LC + H  EA  LA
Sbjct: 367 LAASVMVRELCNRNRLLDACYWIGVMEENGVL--CDTDVYNGLLLRLCVEGHVGEALALA 424

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473
           + + ++ I ++    D++++ LK+ GDEEL    PKI
Sbjct: 425 KKVAERGILIEASCADRLMDLLKQYGDEELA---PKI 458


>gi|326519282|dbj|BAJ96640.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326526181|dbj|BAJ93267.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 469

 Score =  201 bits (511), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 127/342 (37%), Positives = 191/342 (55%), Gaps = 10/342 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  +   A L   ++ VLR M    L PD   +++ +R      D+ A  ++M   G+ 
Sbjct: 121 LLLGISAHAGLFPVSLAVLRHMRSSGLAPDVACFHSALRAARWHADVSAVLDIMSRSGVD 180

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P I+T V  +      G  E A  L   M   GCAA++V Y+A+LDG+   G ++ A
Sbjct: 181 PTVPLIVTAVHRLA---YRGDFEGARCLIDKMPEFGCAASVVVYTAMLDGMLAFGQVDAA 237

Query: 254 LELLGEME--KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
           + LL EME  + G  C PNVV+YT + +  C KG M EAL +LDRM A G  PNRV + T
Sbjct: 238 VGLLEEMEGGRLGAGCVPNVVSYTCLAKCLCRKGRMVEALSVLDRMVARGVMPNRVFVRT 297

Query: 312 LIKGFCV---EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
           LI GFC     G L +AY +++++V  G++SSG CY+ L+V L       EAE L  +M+
Sbjct: 298 LIDGFCAARGAGLLSKAYDVVERLVVDGTLSSGQCYNVLLVGLSVAGMTAEAEGLAQRMM 357

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
            +GV+   LA S M RELC     L   C    +++ G L   DSD+++ +LLGLC++ H
Sbjct: 358 KTGVQLSPLAGSAMARELCQRKMWLHACCWLRLMDENGVL--CDSDVYAGVLLGLCQEGH 415

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            +EA+ L R ++ + I +     D +V+ LK+ GDEEL +++
Sbjct: 416 VLEASALVRKVMDRGIRIDASCADCLVQLLKQHGDEELASHV 457


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 221/456 (48%), Gaps = 8/456 (1%)

Query: 4   FSLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVI 63
           F L R+ S+  N    + +           R           +E  L      + S    
Sbjct: 33  FGLVRLESNRENCTYDQNYDEFSADVEKVYRILRKFHSRVPKLELALQESGVAVRSGLTE 92

Query: 64  EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKE 122
            VL+RC      +G RFF+WA+ Q  YRHS  +Y    + + +++Q  ++   + E  +E
Sbjct: 93  RVLNRC-GDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRE 151

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
               VS  +  V+      AR+  +A+ VL +MP++   PD  ++  ++   C+ G +  
Sbjct: 152 NPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKE 211

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L + M  I   P +  + S++ G+C  G+L +A  +   ++  G   ++V Y+ LL 
Sbjct: 212 AASLFEDM-RIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLT 270

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G    G M  A +LL EM ++  +C PNV+++T++IQ  C K  M+EA+ +   M++ GC
Sbjct: 271 GYAAAGKMVDAYDLLKEMRRK--ECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGC 328

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
             + VT +TLI GFC  G + + Y+L+D ++  G + +   Y  ++    + + L+E  +
Sbjct: 329 PADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIE 388

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           L  +M   G  PD    +++IR  C  G++ EG  ++ ++E  G    +D+ +  +++ G
Sbjct: 389 LMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFV--IMIHG 446

Query: 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
              +   VEA +  + M+ + + L  P    + E L
Sbjct: 447 FLSQRCLVEACEFFKEMVGRGL-LSAPQYGTLKELL 481



 Score = 39.3 bits (90), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 77/207 (37%), Gaps = 37/207 (17%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+ + Y +++    +K ++    ELM+ M  I   PD+  Y  +I+  C  G +++   +
Sbjct: 365 PNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRV 424

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG----------------- 264
           +  M+  G +  L  +  ++ G      +  A E   EM   G                 
Sbjct: 425 WNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSL 484

Query: 265 ------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGI-LDRMEALGCAPN 305
                               C  NV  +T  I      G +KEA    LD M+A G  P 
Sbjct: 485 LRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDA-GVMPQ 543

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKV 332
             T + L++G     N   A ++ +KV
Sbjct: 544 PDTFAKLMRGLRKLYNRQIAAEITEKV 570


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 217/419 (51%), Gaps = 11/419 (2%)

Query: 23  ALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFI 82
           A+  T      +F++ + K    ++++   V++ L       VL+RC  +   +G RFF+
Sbjct: 89  AIEKTVYRILRKFHSRVPKLELALQESGVAVRSGLTE----RVLNRCGDA-GNLGYRFFV 143

Query: 83  WAALQSSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141
           WA+ Q  YRHS  +Y    + + +++Q  ++   + E  +E    VS  +  V+      
Sbjct: 144 WASKQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFAS 203

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           AR+  +A+ VL +MP++   PD  ++  ++   C+ G +  A  L + M  I   P +  
Sbjct: 204 ARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMR-IRFTPTLKH 262

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           + S++ G+C  G+L +A  +   ++  G   ++V Y+ LL G    G M  A +LL EM 
Sbjct: 263 FTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMR 322

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           ++  +C PNV+++T++IQ  C K  M+EA+ +   M++ GC  + VT +TLI GFC  G 
Sbjct: 323 RK--ECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGK 380

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           + + Y+L+D ++  G + +   Y  ++    + + L+E  +L  +M   G  PD    ++
Sbjct: 381 ISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNI 440

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           +IR  C  G++ EG  ++ ++E  G    +D+ +  +++ G   +   VEA +  + M+
Sbjct: 441 VIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFV--IMIHGFLSQRCLVEACEFFKEMV 497



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 77/207 (37%), Gaps = 37/207 (17%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+ + Y +++    +K ++    ELM+ M  I   PD+  Y  +I+  C  G +++   +
Sbjct: 398 PNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRV 457

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG----------------- 264
           +  M+  G +  L  +  ++ G      +  A E   EM   G                 
Sbjct: 458 WNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSL 517

Query: 265 ------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGI-LDRMEALGCAPN 305
                               C  NV  +T  I      G +KEA    LD M+A G  P 
Sbjct: 518 LRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDA-GVMPQ 576

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKV 332
             T + L++G     N   A ++ +KV
Sbjct: 577 PDTFAKLMRGLRKLYNRQIAAEITEKV 603


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 185/333 (55%), Gaps = 10/333 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           VI   C++  + + A  +LR+M   D + PD + Y +V+   C  G M  A E+++ M L
Sbjct: 83  VINGFCKQGEM-DRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKL 141

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFK-VMKRHGCAANLVAYSALLDGICRLGSME 251
             + PD  T+ ++I G+CNA ++++A  L+K ++       ++V Y+AL+DG C+ G++E
Sbjct: 142 KGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLE 201

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
           +A+++LG ME  G  C PNVVTY+S++   C  G + +AL +  RM + GC PN VT +T
Sbjct: 202 KAMKMLGVME--GRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTT 259

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           LI G C    +D A  L+D++ A         Y++L+    R  R++EA++LF +M    
Sbjct: 260 LIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKS 319

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHS 429
             PD +  + ++R  C   ++ E   L E+++     + +D D+  +S+++ G  R    
Sbjct: 320 CLPDRITYTCLVRGFCNASRLEEARFLLENMKTA---AGIDPDVVTYSIVVAGYSRAKRF 376

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           VEAA+  + M+ + +         +++ L K+G
Sbjct: 377 VEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAG 409



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 164/355 (46%), Gaps = 11/355 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC+   L ++A+ + R+M      P+ + Y  +I   C    + AA  LM 
Sbjct: 220 VTYSSLLHGLCKAGDL-DQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMD 278

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      PD ++Y +++ G+C  GR+E+A  LFK M    C  + + Y+ L+ G C   
Sbjct: 279 EMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNAS 338

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E A  LL  M+   G   P+VVTY+ V+  +       EA   +  M A   APN VT
Sbjct: 339 RLEEARFLLENMKTAAG-IDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVT 397

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S+LI G C  G +D A +++  +V      S G ++S++  L R   + EA KL   M 
Sbjct: 398 YSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMA 457

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-----VDSDIHSVLLLGL 423
           A G++P  +  + ++      G++   + L+E + K    SS     V     S L+ GL
Sbjct: 458 AHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGL 517

Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE----LITNLPKIG 474
           C+     +A  +   +  +           IV+ L ++G  E    LI ++ K+G
Sbjct: 518 CKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVG 572



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 133/248 (53%), Gaps = 6/248 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P ++T+  +I GFC A +L+ A   F+ M R   A N   Y+ +++G+C+     +A E+
Sbjct: 5   PTVVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYEV 63

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-GCAPNRVTISTLIKG 315
           L EM ++G   +P++VTY++VI  FC +G M  A  IL  M    G AP+ VT ++++ G
Sbjct: 64  LKEM-RDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDG 122

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML-ASGVKP 374
            C +G +D A +++ ++   G       +S+L+      +++ EA KL+ ++L +S  KP
Sbjct: 123 LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKP 182

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  + +I   C  G + +   +   +E    + +V +  +S LL GLC+     +A  
Sbjct: 183 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVT--YSSLLHGLCKAGDLDQALD 240

Query: 435 LARFMLKK 442
           L R M  K
Sbjct: 241 LFRRMTSK 248



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 139/280 (49%), Gaps = 7/280 (2%)

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
            + +P  + +  +I  FC+   +  A    + M    + P+  TY  ++ G C A     
Sbjct: 1   MECQPTVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSK 59

Query: 218 ACGLFKVMKR-HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           A  + K M+     A +LV YS +++G C+ G M+RA E+L EM    G  +P+VVTYTS
Sbjct: 60  AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDG-IAPDVVTYTS 118

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           V+   C  G M  A  ++  M+  G  P++ T S LI G+C    +DEA +L  +++   
Sbjct: 119 VVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSS 178

Query: 337 SVSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           S       Y++L+    ++  L++A K+   M      P+ +  S ++  LC  G + + 
Sbjct: 179 SWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQA 238

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             L+  +   G + +V +  ++ L+ GLC   H V+AA+L
Sbjct: 239 LDLFRRMTSKGCVPNVVT--YTTLIHGLC-AAHKVDAARL 275


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 208/410 (50%), Gaps = 11/410 (2%)

Query: 34  RFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHS 93
           +F+T + K    +E  L      + S     VL RC      +G RFF+WA+ Q  YRHS
Sbjct: 86  KFHTRVPK----LELALQESGVIMRSGLPERVLSRC-GDAGNLGYRFFVWASKQPGYRHS 140

Query: 94  SFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVL 152
             +Y    + + +++Q  ++   + E  KE   +++ ++  V+       R+  +A+ VL
Sbjct: 141 YEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVL 200

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
            +MP++   PD  ++  ++   C+ G +  A  L + M  +   P++  + S++ G+C  
Sbjct: 201 DEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDM-RVRFNPNLRHFTSLLYGWCRE 259

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G++ +A  +   +K  G   ++V Y+ LL G  + G M  A +LL EM+K   +C PN  
Sbjct: 260 GKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKV--NCGPNAA 317

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           ++T +IQ FC    M EA+ I   M+  GC  + VT +TLI GFC  GN D+AY+++D +
Sbjct: 318 SFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDM 377

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +  G   S   Y  +++   + + L+E  +L  +M   G  PD    + MIR +C  G +
Sbjct: 378 IQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDL 437

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            E   L+ +++  G    +D+ I  +++ G   +   VEA    + M+++
Sbjct: 438 KEAVRLWGEMQAGGLNPGLDTYI--LMVHGFLSQGCLVEACDYFKEMVER 485



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 83/227 (36%), Gaps = 36/227 (15%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG----------DMIAA 183
           +I + C+  ++ +EAM +  +M       D + Y  +I  FC+ G          DMI  
Sbjct: 322 LIQSFCKTEKM-DEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQK 380

Query: 184 D-------------------------ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
                                     EL++ M  I   PD+  Y +MI+  C  G L++A
Sbjct: 381 GHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEA 440

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L+  M+  G    L  Y  ++ G    G +  A +   EM + G   +P   T   + 
Sbjct: 441 VRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELT 500

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
                   ++ A  +   M   GC  N    +  I      G++ EA
Sbjct: 501 NALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHALFSNGHVKEA 547


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 161/305 (52%), Gaps = 3/305 (0%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I  LC+K ++A EAM + R+M E    PD+  YN +I   C+   +     LM  M    
Sbjct: 98  INGLCKKGQIA-EAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARG 156

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             P ++TY ++I GFC AGR++ A  +   M+  G   N V Y+AL+ G+C  G +ERA+
Sbjct: 157 FSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAI 216

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            +L EM+  G +C PNVVTYT +I   C KG+ +  +  LD M   GC PN  T + LI 
Sbjct: 217 LVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIH 276

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C +G+  EA  L++++VA G       Y+SL+  L +   L  A ++   M+  GV P
Sbjct: 277 GLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAP 336

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D    + +I+ LC  G + E   L +++   G +   +S  ++ L+ G  + + +  A +
Sbjct: 337 DVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVP--NSVTYTTLINGFTQADRTDHALQ 394

Query: 435 LARFM 439
           L   M
Sbjct: 395 LVNEM 399



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 129/244 (52%), Gaps = 12/244 (4%)

Query: 114 IDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR-----PDTIIY 167
           +D+++  +  G    +V    +I  LC+   +   A+ VL++M    LR     P+ + Y
Sbjct: 181 MDILDEMEHRGITPNTVTYTALIQGLCDCGEV-ERAILVLKEM---KLRGNECCPNVVTY 236

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
             +I   C+KG      E +  M +   +P+  TY ++I G C  G   +A  L   M  
Sbjct: 237 TQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVA 296

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            GC  ++V Y++L+DG+C++G ++ A E+   M ++G   +P+V TYTS+IQ  C  G++
Sbjct: 297 IGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKG--VAPDVFTYTSLIQGLCDAGLL 354

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            EALG++  M A G  PN VT +TLI GF      D A QL++++ + G + +G  Y  L
Sbjct: 355 DEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKIL 414

Query: 348 VVEL 351
              L
Sbjct: 415 FKSL 418



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 119/234 (50%), Gaps = 6/234 (2%)

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            ++++YS  ++G+C+ G +  A+E+  EME++G   +P+  TY  +I   C    ++  +
Sbjct: 89  TDVISYSRKINGLCKKGQIAEAMEIFREMEEKGS--APDSFTYNILINGLCKDAQLEMGV 146

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            ++D M+A G +P  VT +TLI GFC  G +D A  ++D++   G   +   Y++L+  L
Sbjct: 147 SLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGL 206

Query: 352 VRTKRLKEAEKLFSKMLASGVK--PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
                ++ A  +  +M   G +  P+ +  + +I  LC  G    G    +++   G   
Sbjct: 207 CDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFP 266

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             ++  ++ L+ GLC+K   +EAA L   M+     L     + +++ L K G+
Sbjct: 267 --NNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGE 318


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 211/410 (51%), Gaps = 11/410 (2%)

Query: 34  RFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHS 93
           +F+T + K    ++++   +++ L       VL RC      +G RFF+WA+ Q  YRHS
Sbjct: 109 KFHTRVPKLELALQESGVIMRSGLPE----RVLSRC-GDAGNLGYRFFVWASKQPGYRHS 163

Query: 94  SFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVL 152
             +Y    + + +++Q  ++   + E  KE   +++ ++  V+       R+  +A+ VL
Sbjct: 164 YEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVL 223

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
            +MP++   PD  ++  ++   C+ G +  A  L + M  +   P++  + S++ G+C  
Sbjct: 224 DEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDM-RVRFNPNLRHFTSLLYGWCRE 282

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G++ +A  +   +K  G   ++V Y+ LL G  + G M  A +LL EM+K   +C PN  
Sbjct: 283 GKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKV--NCGPNAA 340

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           ++T +IQ FC    M EA+ I   M+  GC  + VT +TLI GFC  GN D+AY+++D +
Sbjct: 341 SFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDM 400

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +  G   S   Y  +++   + + L+E  +L  +M   G  PD    + MIR +C  G +
Sbjct: 401 IQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDL 460

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            E   L+ +++  G    +D+ I  +++ G   +   VEA    + M+++
Sbjct: 461 KEAVRLWGEMQAGGLNPGLDTYI--LMVHGFLSQGCLVEACDYFKEMVER 508



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 83/227 (36%), Gaps = 36/227 (15%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG----------DMIAA 183
           +I + C+  ++ +EAM +  +M       D + Y  +I  FC+ G          DMI  
Sbjct: 345 LIQSFCKTEKM-DEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQK 403

Query: 184 D-------------------------ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
                                     EL++ M  I   PD+  Y +MI+  C  G L++A
Sbjct: 404 GHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEA 463

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L+  M+  G    L  Y  ++ G    G +  A +   EM + G   +P   T   + 
Sbjct: 464 VRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELT 523

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
                   ++ A  +   M   GC  N    +  I      G++ EA
Sbjct: 524 NALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHALFSNGHVKEA 570


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 228/468 (48%), Gaps = 28/468 (5%)

Query: 23  ALHFTTASPAERFYT----HLQKNPNNIEKTLATVKAKLD----------STCVIEVLHR 68
           +L F   + A +F++    H ++NPN       +    LD           + V  V+ +
Sbjct: 53  SLSFEETTLANKFHSLIKDHHRRNPNFSLPNTPSHSLSLDFSHFSTSPVSPSLVSHVIEK 112

Query: 69  CFPSQSQM----GIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEG 124
           C   +  +     + FF WA  +  + H    YN   +++   +N  +   V++  K   
Sbjct: 113 CAAVRHGIPFFQALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARN 172

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
             +S++   ++     +A LA+EA+    +M +++ +PD I ++ +I + C K     A 
Sbjct: 173 VEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQ 232

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
                +      PD+I Y ++++G+C AG + +A  +F  MK  GC  N+  Y+ ++D +
Sbjct: 233 SFFDSLK-DKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDAL 291

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           CR G + RA ++  EM   G  C PN +T+ +++++    G  ++ L + ++M+ +GC P
Sbjct: 292 CRCGQITRAHDVFAEMLDVG--CEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPP 349

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           + VT + LI+  C +GNLDEA ++++ +V  G   +   ++ L   + + + +  A +L+
Sbjct: 350 DTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLY 409

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           +KM     K + +  ++++R             L +++++     +V++  + VL+   C
Sbjct: 410 AKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNT--YCVLIAMYC 467

Query: 425 RKNHSVEAAKLARFMLKKRIWLQG-PYVDKIVEHLKKSGD----EELI 467
              H   A K  R M++++      P  +K+++ L+K+G     EEL+
Sbjct: 468 GMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELV 515


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 171/308 (55%), Gaps = 6/308 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I    +K R+ +EA  +  +M    L P    YN+++  FC++  M  A EL K M   
Sbjct: 49  LIDGYAKKGRV-DEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEK 107

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACG-LFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
              PD++TY ++I G C  G++ +A   LF  M   GC+AN VAY+AL++G+C+  ++ER
Sbjct: 108 GFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIER 167

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A +LL EM  +G    P+ +TY +++   C  G + EA    D M + G +P+ V  + L
Sbjct: 168 AYKLLEEMASKG--YVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGL 225

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +     EG  DEA +L   V+A G +     Y+S+++ L R   + EAE++F KM+ASG 
Sbjct: 226 LDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGC 285

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            P+G   S+++   C   +V +   + E++ KIG +  V +  +++LL GLC+ N   +A
Sbjct: 286 APNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVT--YNILLDGLCKTNLVDKA 343

Query: 433 AKLARFML 440
            +L   M+
Sbjct: 344 HELFSTMV 351



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 158/280 (56%), Gaps = 5/280 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+   +  V++ FC++G +    +L + M    + PD I Y  +I G+   GR+++A  L
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           ++ M   G   ++  Y++LL+  C+   M+ A+EL   M ++G +  P+VVTY+++I   
Sbjct: 66  YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFE--PDVVTYSTIISGL 123

Query: 282 CGKGMMKEALGIL-DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           C  G + EAL +L  +M   GC+ N V  + LI G C + N++ AY+L++++ + G V  
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPD 183

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++++  L R  ++ EA++ F  M + G  PD +A + ++  L   G+  E   L++
Sbjct: 184 NITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFK 243

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           D+   G++   D+  ++ +LLGL RK++  EA ++ + M+
Sbjct: 244 DVIAKGYMP--DTVTYNSILLGLARKSNMDEAEEMFKKMV 281



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 88  SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
           S Y ++S + N  C+ +++K+   +   + E   E   V       +I  LC+  ++   
Sbjct: 77  SIYTYNSLL-NAFCKETKMKEAMELFKTMAEKGFEPDVVT---YSTIISGLCKTGKVTEA 132

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
              +  KM E     +T+ YN +I   C+  ++  A +L++ M      PD ITY +++ 
Sbjct: 133 LEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILS 192

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G++ +A   F  M   G + ++VAY+ LLD + + G  + A++L  ++  +G   
Sbjct: 193 GLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKG--Y 250

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+ VTY S++     K  M EA  +  +M A GCAPN  T S ++ G C    +D+A++
Sbjct: 251 MPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHK 310

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           +++++   G+V     Y+ L+  L +T  + +A +LFS M+ +G  PD ++ SV++  LC
Sbjct: 311 VLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLC 370

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
              +V +   L++ + +   +  V +   ++L+ GLC+     EA  L
Sbjct: 371 KTNKVHDARVLFDRMIERKLVPDVVT--FNILMDGLCKAGKLDEAKDL 416



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 137/277 (49%), Gaps = 3/277 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC   +++ EA      MP     PD + YN ++    ++G    A +L K +   
Sbjct: 190 ILSGLCRMGKVS-EAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAK 248

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD +TY S++ G      +++A  +FK M   GCA N   YS +L G CR   ++ A
Sbjct: 249 GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDA 308

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++L EM K G    P+VVTY  ++   C   ++ +A  +   M   GCAP+ V+ S ++
Sbjct: 309 HKVLEEMSKIGA--VPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVL 366

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C    + +A  L D+++    V     ++ L+  L +  +L EA+ L  +M  SG  
Sbjct: 367 NGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCA 426

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           PD +A + ++  L   G+ ++   L + +++ GFLS 
Sbjct: 427 PDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 97/178 (54%), Gaps = 3/178 (1%)

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +CSPN  T+  V++ FC +G +++   + ++M   G +P+ +  + LI G+  +G +DEA
Sbjct: 3   ECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEA 62

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L +++V+ G   S   Y+SL+    +  ++KEA +LF  M   G +PD +  S +I  
Sbjct: 63  NRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISG 122

Query: 386 LCLGGQVLEGF-CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC  G+V E    L+  + + G   S ++  ++ L+ GLC+  +   A KL   M  K
Sbjct: 123 LCKTGKVTEALEMLFHKMIERG--CSANTVAYNALINGLCKDENIERAYKLLEEMASK 178



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 2/178 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC  +     ++ +   +A+  ++A  VL +M +    PD + YN ++   C+   +  A
Sbjct: 284 GCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKA 343

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            EL   M      PDI++Y  ++ G C   ++ DA  LF  M       ++V ++ L+DG
Sbjct: 344 HELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDG 403

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +C+ G ++ A +LL +M   G  C+P+ V Y +++     +G   +A  +   M+  G
Sbjct: 404 LCKAGKLDEAKDLLDQMTCSG--CAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKG 459


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 193/394 (48%), Gaps = 13/394 (3%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           S     +RFF WA+ Q  + H+ + YNR  E     +       +++     G   +V  
Sbjct: 2   SDPDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFT 61

Query: 132 MKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
             V+   LC+   L ++A  +L +M E    PD  IYN VI   C+  +   A +  + M
Sbjct: 62  YAVVIQGLCKSGDL-DKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM 120

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
              +   ++IT+  MI G C A RL +A   F  MK+ G   N   Y+ L++G C++  +
Sbjct: 121 ---ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKV 177

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
            RA  LL EM++ G   +PNVVTY++VI  FC +  +  A  +  +M   GC PN VT +
Sbjct: 178 HRAYLLLKEMKESG--LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYN 235

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           TL+ G C  G +DEAY+L+D++   G       Y +L+  L +T ++  A K+F      
Sbjct: 236 TLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNG 295

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNH 428
              PD +A S +I  LC  G++ E   L+E + +    +S + D+   + L+ GLC+ + 
Sbjct: 296 DCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRE----NSCEPDVVTFTALMDGLCKGDR 351

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
             EA ++   M  +           +++ L K+G
Sbjct: 352 LQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTG 385



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 173/320 (54%), Gaps = 6/320 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E GC+ ++     + + LC    L +EA  +L +M E  L+PD   Y+ ++   C+ G +
Sbjct: 224 ENGCMPNLVTYNTLLSGLCRNG-LMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKI 282

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A ++ +     D  PD++ Y ++I G C AGRL++AC LF+ M+ + C  ++V ++AL
Sbjct: 283 DMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTAL 342

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG+C+   ++ A ++L  ME    +C+PNV+TY+S+I   C  G +++A  +  RM   
Sbjct: 343 MDGLCKGDRLQEAQQVLETMEDR--NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR 400

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN VT ++LI GFC+   +D A  L++++ A G +     Y++L+  L +T R  EA
Sbjct: 401 GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 460

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +LF  M A    PD +  S +I   C   ++     L++D+ K   L  V +   S L+
Sbjct: 461 NRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVT--FSTLV 518

Query: 421 LGLCRKNHSVEAAKLARFML 440
            G C      +A +L   M+
Sbjct: 519 EGYCNAGLVDDAERLLEEMV 538



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 178/386 (46%), Gaps = 39/386 (10%)

Query: 116 VVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           V+E  ++  C  +V     +I  LC+  ++  +A  V ++M    + P+ + YN++I  F
Sbjct: 358 VLETMEDRNCTPNVITYSSLIDGLCKTGQV-RDAQEVFKRMIVRGIEPNVVTYNSLIHGF 416

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C    + +A  LM+ M      PDIITY ++I G C  GR  +A  LF  MK   C  ++
Sbjct: 417 CMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDV 476

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEG------------------------------ 264
           + YS L+ G C+L  ++ A  L  +M K+                               
Sbjct: 477 ITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEE 536

Query: 265 ---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
               DCSP+V TYTS++  FC  G M EA  +L RM   GC PN VT + LI  FC  G 
Sbjct: 537 MVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 596

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM-LASGVKPDGLACS 380
              AY+L++++V  G   +   Y SL+     T  L+EA K+  ++      K D  A  
Sbjct: 597 PTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYR 656

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK-LARFM 439
           VM+  LC  G++     L E I++ G  +    DI+  L+ GLC+     +A + L    
Sbjct: 657 VMMDGLCRTGRMSAALELLEAIKQSG--TPPRHDIYVALIRGLCQGKELGKAMEVLEEMT 714

Query: 440 LKKRIWLQGPYVDKIVEHLKKSGDEE 465
           L ++        + +++ L + G  E
Sbjct: 715 LSRKSRPNAEAYEAVIQELAREGRHE 740



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 165/321 (51%), Gaps = 6/321 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           + E  +E  C   V     + + LC+  RL  EA  VL  M + +  P+ I Y+++I   
Sbjct: 323 LFEKMRENSCEPDVVTFTALMDGLCKGDRL-QEAQQVLETMEDRNCTPNVITYSSLIDGL 381

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ G +  A E+ K M +  + P+++TY S+I GFC    ++ A  L + M   GC  ++
Sbjct: 382 CKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDI 441

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + Y+ L+DG+C+ G    A  L G+M+ +   C+P+V+TY+ +I  FC    +  A  + 
Sbjct: 442 ITYNTLIDGLCKTGRAPEANRLFGDMKAKF--CNPDVITYSCLIGGFCKLERIDMARTLF 499

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           D M      P+ VT STL++G+C  G +D+A +L++++VA         Y+SLV    + 
Sbjct: 500 DDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKV 559

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            R+ EA ++  +M   G +P+ +  + +I   C  G+    + L E++   G   +V + 
Sbjct: 560 GRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVIT- 618

Query: 415 IHSVLLLGLCRKNHSVEAAKL 435
            +  L+ G C      EA K+
Sbjct: 619 -YRSLIGGFCGTGDLEEARKI 638



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 36/199 (18%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C+  R+  EA  VL++M +   +P+ + Y  +I  FC  G    A  L++ M   
Sbjct: 552 LVDGFCKVGRMV-EARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGN 610

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRLGSMER 252
            + P++ITY S+I GFC  G LE+A  + + ++R   C A++ AY  ++DG+CR G M  
Sbjct: 611 GVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSA 670

Query: 253 ALELLGEMEKEG-------------GDCS---------------------PNVVTYTSVI 278
           ALELL  +++ G             G C                      PN   Y +VI
Sbjct: 671 ALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVI 730

Query: 279 QIFCGKGMMKEALGILDRM 297
           Q    +G  +EA  + D +
Sbjct: 731 QELAREGRHEEANALADEL 749


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 182/369 (49%), Gaps = 14/369 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+M R+++     ID++    + GC   V     + +   K + + EA  + ++M
Sbjct: 75  LLNGLCKMGRLEE----AIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEM 130

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               L  DT+ Y  +IR   + G +  A  + K M      PD++T  +MI G C AGR+
Sbjct: 131 ASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRI 190

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
             A  +FK M+  G A N V YSAL+ G+C+   M+ ALE+L +M+K    C+P+ +TY 
Sbjct: 191 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK--AFCTPDTITYN 248

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I   C  G +  A    D M   GC P+  T + LI GFC  GN D A  + D + + 
Sbjct: 249 ILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSS 308

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
               +   Y +L+  L + ++L +A   +  M   G  PD    S ++  LC  G+ LEG
Sbjct: 309 RCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGK-LEG 367

Query: 396 FC-LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV-DK 453
            C L++++E+ G     +S   + L+  LC+ N   EA  L  F   ++  +  PY  + 
Sbjct: 368 GCMLFDEMERSGV---ANSQTRTRLIFHLCKANRVDEAVSL--FNAIRKEGMPHPYAYNS 422

Query: 454 IVEHLKKSG 462
           I+  L KSG
Sbjct: 423 IISALIKSG 431



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 133/263 (50%), Gaps = 4/263 (1%)

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T+  +I G   AG L  A  L +    +GC  ++  Y+ ++D + +   ++ A+ L+ ++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G  C+P + TY +++   C  G ++EA+ +L ++   GC P+ VT ++LI G   + 
Sbjct: 61  TANG--CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKK 118

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
              EAY+L  ++ + G      CY++L+  L++  ++ +A  ++  M + G  PD +  S
Sbjct: 119 RSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLS 178

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            MI  LC  G++     +++ +E  G   + +  ++S L+ GLC+      A ++   M 
Sbjct: 179 TMIDGLCKAGRIGAAVRIFKSMEARGL--APNEVVYSALIHGLCKARKMDCALEMLAQMK 236

Query: 441 KKRIWLQGPYVDKIVEHLKKSGD 463
           K          + +++ L KSGD
Sbjct: 237 KAFCTPDTITYNILIDGLCKSGD 259


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 177/321 (55%), Gaps = 14/321 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC K R++ E   ++ +M    L PD + YN ++  FC++G++     L+  M   
Sbjct: 283 VINGLCGKGRMS-EVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGK 341

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+++TY ++I   C AG L  A  +F  M+  G   N   Y+ L+DG C+ G M  A
Sbjct: 342 GLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEA 401

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++L EM   G   SP+VVTY +++  +C  G ++EA+GIL  M   G  P+ V+ ST+I
Sbjct: 402 YKVLSEMIVSG--FSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVI 459

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC E  L +A+Q+ +++V  G +     YSSL+  L   ++L EA  LF +M+  G+ 
Sbjct: 460 AGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLP 519

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  + +I   C+ G++ +   L++++ + GFL   D+  +SVL+ GL +K       
Sbjct: 520 PDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLP--DNVTYSVLINGLNKK------- 570

Query: 434 KLARFMLKKRIWLQGPYVDKI 454
             AR  + KR+ L+  Y + +
Sbjct: 571 --ARTKVAKRLLLKLFYEESV 589



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 165/296 (55%), Gaps = 4/296 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           + +  +RKM +  + P+ + YN +I   C+K  +  A  L++ M +  +  ++I+Y S+I
Sbjct: 225 KGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVI 284

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C  GR+ +   L + M+  G   + V Y+ L++G C+ G++ + L LL EM  +G  
Sbjct: 285 NGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKG-- 342

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            SPNVVTYT++I   C  G +  A+ I D+M   G  PN  T +TLI GFC +G ++EAY
Sbjct: 343 LSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAY 402

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +++ +++  G   S   Y++LV       R++EA  +   M+  G+ PD ++ S +I   
Sbjct: 403 KVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGF 462

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           C   ++ + F + E++ + G L   D+  +S L+ GLC +   VEA  L R M+++
Sbjct: 463 CRERELGKAFQMKEEMVEKGVLP--DTVTYSSLIQGLCLQQKLVEAFDLFREMMRR 516



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 157/302 (51%), Gaps = 21/302 (6%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           +C+   L+  A+ +  +M    LRP+   Y  +I  FC+KG M  A +++  M +    P
Sbjct: 357 MCKAGNLS-RAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSP 415

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            ++TY +++ G+C  GR+++A G+ + M   G   ++V+YS ++ G CR   + +A ++ 
Sbjct: 416 SVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMK 475

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM ++G    P+ VTY+S+IQ  C +  + EA  +   M   G  P+ VT ++LI  +C
Sbjct: 476 EEMVEKG--VLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYC 533

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
           V+G L +A +L D++V  G +     YS L+  L +  R K A++L  K+      PD +
Sbjct: 534 VDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDV 593

Query: 378 ACSVMIRELCLGGQ------VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
             + +I E C   +      +++GFC+       G ++  D    ++L     ++NH   
Sbjct: 594 TYNTLI-ENCSNNEFKSVEGLVKGFCMK------GLMNEADRVFKTML-----QRNHKPN 641

Query: 432 AA 433
           AA
Sbjct: 642 AA 643



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 105/212 (49%), Gaps = 7/212 (3%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS-----MERALELLGE 259
           ++K     G +  A  L  +  RHG A  +++Y+A+LD + R  S      + A  +  +
Sbjct: 138 VVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRD 197

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M + G   SPNV TY  +I+    +G +++ LG + +ME  G +PN VT +TLI   C +
Sbjct: 198 MVRNG--VSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKK 255

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
             + EA  L+  +  GG  ++   Y+S++  L    R+ E  +L  +M   G+ PD +  
Sbjct: 256 KKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTY 315

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           + ++   C  G + +G  L  ++   G   +V
Sbjct: 316 NTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNV 347



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 113/270 (41%), Gaps = 55/270 (20%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA---- 183
           +V    +I  LC + +L  EA  + R+M    L PD + Y ++I  +C  G++  A    
Sbjct: 487 TVTYSSLIQGLCLQQKLV-EAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLH 545

Query: 184 DE---------------LMKGMG-----------LIDLY-----PDIITYVSMI------ 206
           DE               L+ G+            L+ L+     PD +TY ++I      
Sbjct: 546 DEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNN 605

Query: 207 ---------KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
                    KGFC  G + +A  +FK M +     N   Y+ ++ G  R G++ +A  L 
Sbjct: 606 EFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLY 665

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS-TLIKGF 316
            E+E     C  + V   ++++    +GM  E   +L  +    C  N   ++  L++  
Sbjct: 666 MELEHSSFAC--HTVAVIALVKALAREGMNDELSRLLQNI-LRSCRLNDAKVAKVLVEVN 722

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
             EGN+D    ++ ++   G +  GG +SS
Sbjct: 723 FKEGNMDAVLNVLTEMAKDGLLPDGGIHSS 752


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 177/344 (51%), Gaps = 18/344 (5%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           VV   +EEG   + K   V FN     LC+  R+   A  V  +M    L PD + YN +
Sbjct: 209 VVSLMREEG---NAKPNLVTFNSMVNGLCKAGRMEG-ARKVFDEMVREGLAPDVVSYNTL 264

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +  +C+ G +  +  +   M    L PD++T+ S+I   C AG LE A  L   M+  G 
Sbjct: 265 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL 324

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             N V ++AL+DG C+ G ++ AL  + EM K G    P+VV Y ++I  +C  G M  A
Sbjct: 325 RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG--IQPSVVCYNALINGYCKLGRMDLA 382

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             ++  MEA    P+ VT ST+I G+C  GNLD A+QL  K++  G +     YSSL+  
Sbjct: 383 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRG 442

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L   KRL +A +LF  ML  GV+PD    + +I   C  G V +   L++++ + G L  
Sbjct: 443 LCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 502

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           V +  +SVL+ GL +   + EA +L       +++ + P  D I
Sbjct: 503 VVT--YSVLINGLSKSARTKEAHRLLF-----KLYHEDPVPDNI 539



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 170/331 (51%), Gaps = 26/331 (7%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADE 185
           V    +I   C+   L  +A+ ++ +M E  LR + + +  +I  FC+KG   D + A E
Sbjct: 294 VTFTSLIHATCKAGNL-EQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVE 352

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
            M+  G+    P ++ Y ++I G+C  GR++ A  L + M+      ++V YS ++ G C
Sbjct: 353 EMRKCGI---QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           ++G+++ A +L  +M K+G    P+ +TY+S+I+  C +  + +A  + + M  LG  P+
Sbjct: 410 KVGNLDSAFQLNQKMLKKG--VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 467

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
             T +TLI G C EGN+++A  L D+++  G +     YS L+  L ++ R KEA +L  
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 527

Query: 366 KMLASGVKPDG-------LACS--------VMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           K+      PD        L CS         +++  C+ G + E   +Y+ +    +   
Sbjct: 528 KLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNW--K 585

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +D  ++S+L+ G CR  +  +A    + ML+
Sbjct: 586 LDGSVYSILIHGHCRGGNVRKALSFHKQMLR 616



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 186/393 (47%), Gaps = 32/393 (8%)

Query: 57  LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQ-SSYRHSSFMYNRACEMSRIKQNPSIIID 115
           L   C +  LH      S+M  R  +   +  +S  H++      C+   ++Q     + 
Sbjct: 265 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHAT------CKAGNLEQ----AVA 314

Query: 116 VVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +V   +E G  ++ V    +I   C+K  L ++A+  + +M +  ++P  + YN +I  +
Sbjct: 315 LVAQMRERGLRMNEVTFTALIDGFCKKGFL-DDALLAVEEMRKCGIQPSVVCYNALINGY 373

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ G M  A EL++ M    + PD++TY ++I G+C  G L+ A  L + M + G   + 
Sbjct: 374 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + YS+L+ G+C    +  A EL   M + G    P+  TYT++I   C +G +++AL + 
Sbjct: 434 ITYSSLIRGLCEEKRLNDACELFENMLQLG--VQPDEFTYTTLIDGHCKEGNVEKALSLH 491

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL------- 347
           D M   G  P+ VT S LI G        EA++L+ K+     V     Y +L       
Sbjct: 492 DEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKA 551

Query: 348 ----VVELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               VV L++       +KEA+K++  ML    K DG   S++I   C GG V +    +
Sbjct: 552 EFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFH 611

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           + + + GF  +  S I   L+ GL  +   VEA
Sbjct: 612 KQMLRSGFSPNSTSTIS--LVRGLFEEGMVVEA 642



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 152/302 (50%), Gaps = 19/302 (6%)

Query: 117 VEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           VE  ++ G   SV     + N  C+  R+ + A  ++R+M    ++PD + Y+ +I  +C
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRM-DLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G++ +A +L + M    + PD ITY S+I+G C   RL DAC LF+ M + G   +  
Sbjct: 410 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 469

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L+DG C+ G++E+AL L  EM ++G    P+VVTY+ +I         KEA  +L 
Sbjct: 470 TYTTLIDGHCKEGNVEKALSLHDEMIRKG--VLPDVVTYSVLINGLSKSARTKEAHRLLF 527

Query: 296 RMEALGCAPNRV---------------TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           ++      P+ +               ++  L+KGFC++G + EA ++   ++       
Sbjct: 528 KLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLD 587

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  YS L+    R   +++A     +ML SG  P+  +   ++R L   G V+E     +
Sbjct: 588 GSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQ 647

Query: 401 DI 402
           D+
Sbjct: 648 DL 649



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 140/283 (49%), Gaps = 4/283 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P    YN V+ L      + +A   +  M    + P++ TY  +++  C  GRLE+A G+
Sbjct: 116 PSVPAYNAVL-LALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M+  GCA N V Y+ L+   CR G ++ A  ++  M +EG +  PN+VT+ S++   
Sbjct: 175 VGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG-NAKPNLVTFNSMVNGL 233

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G M+ A  + D M   G AP+ V+ +TL+ G+C  G L E+  +  ++   G V   
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             ++SL+    +   L++A  L ++M   G++ + +  + +I   C  G + +     E+
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE 353

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + K G   SV    ++ L+ G C+      A +L R M  KR+
Sbjct: 354 MRKCGIQPSV--VCYNALINGYCKLGRMDLARELIREMEAKRV 394



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 125/288 (43%), Gaps = 56/288 (19%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C++ R+     +I ++ EA + +  VV+     +I   C+   L + A  + +KM
Sbjct: 369 LINGYCKLGRMDLARELIREM-EAKRVKPDVVTYS--TIISGYCKVGNL-DSAFQLNQKM 424

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            +  + PD I Y+++IR  CE+  +  A EL + M  + + PD  TY ++I G C  G +
Sbjct: 425 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNV 484

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY- 274
           E A  L   M R G   ++V YS L++G+ +    + A  LL ++  E  D  P+ + Y 
Sbjct: 485 EKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE--DPVPDNIKYD 542

Query: 275 --------------TSVIQIFCGKGMM--------------------------------- 287
                          ++++ FC KG+M                                 
Sbjct: 543 ALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGG 602

Query: 288 --KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
             ++AL    +M   G +PN  +  +L++G   EG + EA   I  ++
Sbjct: 603 NVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLL 650


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 177/344 (51%), Gaps = 18/344 (5%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           VV   +EEG   + K   V FN     LC+  R+   A  V  +M    L PD + YN +
Sbjct: 209 VVSLMREEG---NAKPNLVTFNSMVNGLCKAGRMEG-ARKVFDEMVREGLAPDVVSYNTL 264

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +  +C+ G +  +  +   M    L PD++T+ S+I   C AG LE A  L   M+  G 
Sbjct: 265 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL 324

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             N V ++AL+DG C+ G ++ AL  + EM K G    P+VV Y ++I  +C  G M  A
Sbjct: 325 RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG--IQPSVVCYNALINGYCKLGRMDLA 382

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             ++  MEA    P+ VT ST+I G+C  GNLD A+QL  K++  G +     YSSL+  
Sbjct: 383 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRG 442

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L   KRL +A +LF  ML  GV+PD    + +I   C  G V +   L++++ + G L  
Sbjct: 443 LCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 502

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           V +  +SVL+ GL +   + EA +L       +++ + P  D I
Sbjct: 503 VVT--YSVLINGLSKSARTKEAHRLLF-----KLYHEDPVPDNI 539



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 170/331 (51%), Gaps = 26/331 (7%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADE 185
           V    +I   C+   L  +A+ ++ +M E  LR + + +  +I  FC+KG   D + A E
Sbjct: 294 VTFTSLIHATCKAGNL-EQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVE 352

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
            M+  G+    P ++ Y ++I G+C  GR++ A  L + M+      ++V YS ++ G C
Sbjct: 353 EMRKCGI---QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           ++G+++ A +L  +M K+G    P+ +TY+S+I+  C +  + +A  + + M  LG  P+
Sbjct: 410 KVGNLDSAFQLNQKMLKKG--VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 467

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
             T +TLI G C EGN+++A  L D+++  G +     YS L+  L ++ R KEA +L  
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 527

Query: 366 KMLASGVKPDG-------LACS--------VMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           K+      PD        L CS         +++  C+ G + E   +Y+ +    +   
Sbjct: 528 KLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNW--K 585

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +D  ++S+L+ G CR  +  +A    + ML+
Sbjct: 586 LDGSVYSILIHGHCRGGNVRKALSFHKQMLR 616



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 186/393 (47%), Gaps = 32/393 (8%)

Query: 57  LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQ-SSYRHSSFMYNRACEMSRIKQNPSIIID 115
           L   C +  LH      S+M  R  +   +  +S  H++      C+   ++Q     + 
Sbjct: 265 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHAT------CKAGNLEQ----AVA 314

Query: 116 VVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +V   +E G  ++ V    +I   C+K  L ++A+  + +M +  ++P  + YN +I  +
Sbjct: 315 LVAQMRERGLRMNEVTFTALIDGFCKKGFL-DDALLAVEEMRKCGIQPSVVCYNALINGY 373

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ G M  A EL++ M    + PD++TY ++I G+C  G L+ A  L + M + G   + 
Sbjct: 374 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + YS+L+ G+C    +  A EL   M + G    P+  TYT++I   C +G +++AL + 
Sbjct: 434 ITYSSLIRGLCEEKRLNDACELFENMLQLG--VQPDEFTYTTLIDGHCKEGNVEKALSLH 491

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL------- 347
           D M   G  P+ VT S LI G        EA++L+ K+     V     Y +L       
Sbjct: 492 DEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKA 551

Query: 348 ----VVELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               VV L++       +KEA+K++  ML    K DG   S++I   C GG V +    +
Sbjct: 552 EFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFH 611

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           + + + GF  +  S I   L+ GL  +   VEA
Sbjct: 612 KQMLRSGFSPNSTSTIS--LVRGLFEEGMVVEA 642



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 22/332 (6%)

Query: 117 VEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           VE  ++ G   SV     + N  C+  R+ + A  ++R+M    ++PD + Y+ +I  +C
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRM-DLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G++ +A +L + M    + PD ITY S+I+G C   RL DAC LF+ M + G   +  
Sbjct: 410 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 469

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L+DG C+ G++E+AL L  EM ++G    P+VVTY+ +I         KEA  +L 
Sbjct: 470 TYTTLIDGHCKEGNVEKALSLHDEMIRKG--VLPDVVTYSVLINGLSKSARTKEAHRLLF 527

Query: 296 RMEALGCAPNRV---------------TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           ++      P+ +               ++  L+KGFC++G + EA ++   ++       
Sbjct: 528 KLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLD 587

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  YS L+    R   +++A     +ML SG  P+  +   ++R L   G V+E     +
Sbjct: 588 GSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQ 647

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           D+     L+  ++   S  L+ L RK  +V+A
Sbjct: 648 DLLTCCPLADAEA---SKALIDLNRKEGNVDA 676



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 140/283 (49%), Gaps = 4/283 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P    YN V+ L      + +A   +  M    + P++ TY  +++  C  GRLE+A G+
Sbjct: 116 PSVPAYNAVL-LALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M+  GCA N V Y+ L+   CR G ++ A  ++  M +EG +  PN+VT+ S++   
Sbjct: 175 VGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG-NAKPNLVTFNSMVNGL 233

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G M+ A  + D M   G AP+ V+ +TL+ G+C  G L E+  +  ++   G V   
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             ++SL+    +   L++A  L ++M   G++ + +  + +I   C  G + +     E+
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE 353

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + K G   SV    ++ L+ G C+      A +L R M  KR+
Sbjct: 354 MRKCGIQPSV--VCYNALINGYCKLGRMDLARELIREMEAKRV 394


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 190/393 (48%), Gaps = 15/393 (3%)

Query: 69  CFPSQSQMGIRFFIWAALQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEG 124
           C     +MG+RFF     ++    +   YN      C++ RI +       ++ +   EG
Sbjct: 214 CAAGNLEMGLRFF-EEMERNRCLPNVVTYNTVIGAYCKLKRIDE----AFKLLRSMGLEG 268

Query: 125 CVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
              ++    ++ N LC   R+  E   VL +M      PD + YN ++  +C+ G+   A
Sbjct: 269 LEPNLLTYNMVINGLCRVGRIE-ETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQA 327

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             L   M    L PD++TY S+I   C AG L  A   F  M   G   N V Y++L++G
Sbjct: 328 LVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLING 387

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
             + G M+ A  +  EM + G    P +VTY +++   C  G M+EA+G+L  ME  G +
Sbjct: 388 FSQKGFMDEAYRIWDEMIRSG--FPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLS 445

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ V+ ST+I GFC    LD A+Q+  ++V  G       YSSL+  L   +RL EA  L
Sbjct: 446 PDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDL 505

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F +ML   + PD    + +I   C  G + E   L++++ K GFL   D+  ++VL+ GL
Sbjct: 506 FQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLP--DTVTYNVLINGL 563

Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456
            ++  + EA +L   +        G   D ++E
Sbjct: 564 NKQARTREAKRLLLKLFYDESIPNGITYDTLIE 596



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 180/354 (50%), Gaps = 21/354 (5%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  +C+   L N AM    +M    LRP+ + Y ++I  F +KG M  A  +  
Sbjct: 344 VTYTSLINTMCKAGNL-NRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWD 402

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P I+TY +++ G C +GR+E+A GL + M+  G + ++V+YS ++ G CR  
Sbjct: 403 EMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQ 462

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++RA ++  EM ++G   SP+ +TY+S+IQ  C +  + EA  +   M      P+  T
Sbjct: 463 ELDRAFQMNAEMVEKG--VSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFT 520

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            ++LI G+C EG+L+EA  L D+++  G +     Y+ L+  L +  R +EA++L  K+ 
Sbjct: 521 YTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLF 580

Query: 369 ASGVKPDGL-------ACS--------VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
                P+G+       +CS         +I+  C+ G + E   ++E + K       + 
Sbjct: 581 YDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRN--QKPNE 638

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG-DEEL 466
            +++V++ G CR  +  +A KL + M+          +  +V+ L   G DE+L
Sbjct: 639 AVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQL 692



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 166/356 (46%), Gaps = 35/356 (9%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V R+M    +  +   YN +IR FC  G++       + M      P+++TY ++I 
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIG 246

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--- 264
            +C   R+++A  L + M   G   NL+ Y+ +++G+CR+G +E    +L EM+++G   
Sbjct: 247 AYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAP 306

Query: 265 ----------GDCS--------------------PNVVTYTSVIQIFCGKGMMKEALGIL 294
                     G C                     P+VVTYTS+I   C  G +  A+   
Sbjct: 307 DGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFF 366

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           D+M   G  PN VT ++LI GF  +G +DEAY++ D+++  G   +   Y++L+     +
Sbjct: 367 DQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVS 426

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            R++EA  L   M   G+ PD ++ S +I   C   ++   F +  ++ + G   S D+ 
Sbjct: 427 GRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGV--SPDAI 484

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            +S L+ GLC +    EA  L + ML K +         ++    K GD     NL
Sbjct: 485 TYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNL 540



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 167/423 (39%), Gaps = 73/423 (17%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFF-----IWAALQSSYRHSSFM-- 96
           N +   + T  + +++ C    L+R      QM +R        + +L + +    FM  
Sbjct: 337 NGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDE 396

Query: 97  -YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
            Y    EM R    P+I                V    ++   C   R+  EA+ +LR M
Sbjct: 397 AYRIWDEMIRSGFPPTI----------------VTYNALLNGHCVSGRME-EAIGLLRGM 439

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               L PD + Y+ +I  FC   ++  A ++   M    + PD ITY S+I+G C   RL
Sbjct: 440 EGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRL 499

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG----------- 264
            +AC LF+ M       +   Y++L++G C+ G +  AL L  EM K+G           
Sbjct: 500 NEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVL 559

Query: 265 ----------------------GDCSPNVVTYTSVIQI---------------FCGKGMM 287
                                  +  PN +TY ++I+                FC KG+M
Sbjct: 560 INGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLM 619

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            EA  + + M      PN    + +I G C +GN+ +A++L  ++V  G +       +L
Sbjct: 620 NEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIAL 679

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           V  L      ++   +   +L S    D      +++     G +   F L  ++ K GF
Sbjct: 680 VKALYSEGMDEQLNLVIRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKDGF 739

Query: 408 LSS 410
           L S
Sbjct: 740 LPS 742



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 105/212 (49%), Gaps = 5/212 (2%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRL-GSMERALELLGEMEKEGGDCSPNVVT 273
           +E A  +  + K +G    +++Y+A+LD I R    +  A ++  EM   G   S NV +
Sbjct: 148 IEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASG--VSLNVFS 205

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y  +I+ FC  G ++  L   + ME   C PN VT +T+I  +C    +DEA++L+  + 
Sbjct: 206 YNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMG 265

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G   +   Y+ ++  L R  R++E   + ++M   G  PDG+  + ++   C  G   
Sbjct: 266 LEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFH 325

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +   L+ ++ + G    V +  ++ L+  +C+
Sbjct: 326 QALVLHSEMLRNGLPPDVVT--YTSLINTMCK 355



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 108/267 (40%), Gaps = 20/267 (7%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++    +I  LCE+ RL NEA  + ++M    L PD   Y ++I  +C++GD+  A  L 
Sbjct: 483 AITYSSLIQGLCEQRRL-NEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLH 541

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS--------- 238
             M      PD +TY  +I G     R  +A  L   +       N + Y          
Sbjct: 542 DEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDI 601

Query: 239 ------ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
                 AL+ G C  G M  A ++   M K   +  PN   Y  +I   C  G + +A  
Sbjct: 602 EFKSVVALIKGFCMKGLMNEADQVFESMIKR--NQKPNEAVYNVIIHGHCRDGNVHKAHK 659

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL-IDKVVAGGSVSSGGCYSSLVVEL 351
           +   M   G  P+ VTI  L+K    EG +DE   L I  ++    +S      +LV   
Sbjct: 660 LYKEMVDFGFIPHTVTIIALVKALYSEG-MDEQLNLVIRDILRSCKLSDAELSKALVQIN 718

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLA 378
            +   +     L ++M   G  P G A
Sbjct: 719 HKEGNIDAVFNLLTEMAKDGFLPSGAA 745


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 181/360 (50%), Gaps = 13/360 (3%)

Query: 47   EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI 106
            E  L     KL +T V +VL       + +G  FF WA  Q  Y H ++  N   +    
Sbjct: 799  ETALERFTGKLTTTVVGKVLQGVRNGDAALG--FFDWATSQEGYNHDTYTCNCLLQALLR 856

Query: 107  KQNPSIIIDVVEAYKEEGCVVSVKMMK---VIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
             + P    D ++ Y+ + C  S  M     +I  LC    +   A  +L++MP   +  +
Sbjct: 857  LKRPK---DALQVYRNKLC-CSPNMFTFTILIHGLCRAGDIGT-AYELLKEMPRHGVPQN 911

Query: 164  TIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIKGFCNAGRLEDACGLF 222
             I++N VI+  C    + +A EL K M       PD+ TY +++     +G+++DAC L 
Sbjct: 912  VILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLV 971

Query: 223  KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
            + M   GC+ N+V YS+LL G+C+ G ++ A  LL  M + G  CSPN+VTY ++I   C
Sbjct: 972  EDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG--CSPNIVTYNTIIDGHC 1029

Query: 283  GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
              G + EA  +L+ M   GC PN VT + L+  FC  G  ++A  L++ +V  G V +  
Sbjct: 1030 KLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLF 1089

Query: 343  CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
             Y+SL+    +   ++ A +L S M+  G  P+ ++ + +I  LC   +V EG  L E +
Sbjct: 1090 TYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 1149



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 159/295 (53%), Gaps = 4/295 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ ++RKM E   RP+ I YNN++ +FC + DM  A ++++ M      PD I Y ++I 
Sbjct: 354 AVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIIS 413

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC AG+L +A  L + M R GC  ++   S L+D +C+  +++ A ELL      G DC
Sbjct: 414 GFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELL--RMSIGMDC 471

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +P+VV Y+ +I   C    + EA   LD M    C P+ VT ++++ G C    +++A+ 
Sbjct: 472 APDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFL 531

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L D++ A G +     YS ++    +   L  A K+  +M  +   PD +  S +I  LC
Sbjct: 532 LFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLC 591

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             G V + F +++++   G   ++ +  ++ L+ GLC+ N   +AA++   M K+
Sbjct: 592 KAGTVDKAFDVFQEMLGCGCAPNLVT--YNTLIDGLCKINKVEQAAEMLEIMRKQ 644



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 116  VVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
            +VE    +GC  +V     ++  LC+  +L +EA  +L++M      P+ + YN +I   
Sbjct: 970  LVEDMVSKGCSPNVVTYSSLLHGLCKAGKL-DEATALLQRMTRSGCSPNIVTYNTIIDGH 1028

Query: 175  CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            C+ G +  A  L++ M      P+++TY  ++  FC  G+ EDA GL +VM   G   NL
Sbjct: 1029 CKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNL 1088

Query: 235  VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
              Y++LLD  C+   +ERA +LL  M ++G  C PNVV+Y +VI   C    + E + +L
Sbjct: 1089 FTYNSLLDMFCKKDEVERACQLLSSMIQKG--CVPNVVSYNTVIAGLCKATKVHEGVLLL 1146

Query: 295  DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
            ++M +  C P+ VT +T+I   C    +D AY+L + +   G   +   Y+SLV  L ++
Sbjct: 1147 EQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKS 1206

Query: 355  KRLKEAEKLFSKML-ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            +R  +AE L  +M    G  PD +  + +I  LC   +V   + L+  +   G   + D 
Sbjct: 1207 RRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL--APDD 1264

Query: 414  DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              +S+++  LC+     EA  +   MLK 
Sbjct: 1265 VTYSIVISSLCKWRFMDEANNVLELMLKN 1293



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 177/349 (50%), Gaps = 8/349 (2%)

Query: 60   TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
            T +++   +C  ++  +G+   +   ++  Y  + F YN   +M   K        ++ +
Sbjct: 1057 TVLLDAFCKCGKAEDAIGL---VEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSS 1113

Query: 120  YKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
              ++GCV +V     VI  LC KA   +E + +L +M   +  PD + +N +I   C+  
Sbjct: 1114 MIQKGCVPNVVSYNTVIAGLC-KATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTY 1172

Query: 179  DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAY 237
             +  A EL   +      P+++TY S++ G C + R + A  L + M R  GC+ +++ Y
Sbjct: 1173 RVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITY 1232

Query: 238  SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
            + ++DG+C+   ++RA +L  +M  +G   +P+ VTY+ VI   C    M EA  +L+ M
Sbjct: 1233 NTVIDGLCKSKRVDRAYKLFLQMLSDG--LAPDDVTYSIVISSLCKWRFMDEANNVLELM 1290

Query: 298  EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
               G  P  +T  TLI GFC  GNLD+A +++  +++ GS      +S  +  L +  RL
Sbjct: 1291 LKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRL 1350

Query: 358  KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            ++A +L   ML +G+ PD +  + +++  C      +   L+E + + G
Sbjct: 1351 RQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCG 1399



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 167/328 (50%), Gaps = 6/328 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC+  +  ++A+   R+M +    PD++ YN +I    +   +  A  L++ M   
Sbjct: 202 ILRGLCDAGQ-CSDAVLHFREMSK-TCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDN 259

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P++ +Y +++ GFC A R+E+A  L + M   GC  ++V+Y+ +++G+C+L  ++ A
Sbjct: 260 GFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEA 319

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             ++ +M + G  C PNV+TY +++  FC  G +  A+ ++ +M   G  PN +T + ++
Sbjct: 320 CRVMDKMIQRG--CQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIM 377

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             FC   +++ A+Q++  ++  G       YS+++    +  +L+EA  L  +M+  G +
Sbjct: 378 HVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCR 437

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD    S +I  LC    +     L      IG   + D   +S+L+  LC+     EA 
Sbjct: 438 PDVACLSTLIDALCKAAAIDSAQELLR--MSIGMDCAPDVVAYSILIHALCKAKRLPEAE 495

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKS 461
                M+K R +      + +V+ L KS
Sbjct: 496 SWLDVMVKNRCYPDVVTYNSVVDGLCKS 523



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 167/350 (47%), Gaps = 20/350 (5%)

Query: 87  QSSYRHSSFMYN-------RACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNL 138
           +  YR ++  YN       R  +M R  Q       V++   + GC   ++    +I   
Sbjct: 363 ERGYRPNAITYNNIMHVFCRRNDMERAHQ-------VLQMMIQTGCPPDAINYSTIISGF 415

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C+  +L  EA  +L +M     RPD    + +I   C+   + +A EL++    +D  PD
Sbjct: 416 CKAGKL-REAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPD 474

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++ Y  +I   C A RL +A     VM ++ C  ++V Y++++DG+C+   +  A  L  
Sbjct: 475 VVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFD 534

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
            M   G    P+VVTY+ VI  FC    +  A  +L+RM+   C P+ VT S LI G C 
Sbjct: 535 RMRAAG--VMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCK 592

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G +D+A+ +  +++  G   +   Y++L+  L +  ++++A ++   M      PD + 
Sbjct: 593 AGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSIT 652

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
            + +I  LC   ++ E + +  +++  G L   D   +  LL  L + N+
Sbjct: 653 YTCLINGLCNASRLEEAWRVLREMKDKGCLP--DRMTYGTLLRALQKTNN 700



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 119/206 (57%), Gaps = 3/206 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    V+  LC K+R  N+A  +  +M    + PD + Y+ VI  FC+  ++ +A ++++
Sbjct: 511 VTYNSVVDGLC-KSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLE 569

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      PD++TY ++I G C AG ++ A  +F+ M   GCA NLV Y+ L+DG+C++ 
Sbjct: 570 RMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKIN 629

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E+A E+L  M K+   C+P+ +TYT +I   C    ++EA  +L  M+  GC P+R+T
Sbjct: 630 KVEQAAEMLEIMRKQS--CTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMT 687

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVA 334
             TL++      NL+   QL+ ++ A
Sbjct: 688 YGTLLRALQKTNNLELVEQLLKEMEA 713



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 161/326 (49%), Gaps = 3/326 (0%)

Query: 114  IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
            I +VE   E+G V ++     + ++  K      A  +L  M +    P+ + YN VI  
Sbjct: 1073 IGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAG 1132

Query: 174  FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             C+   +     L++ M   +  PDI+T+ ++I   C   R++ A  LF +++  GC  N
Sbjct: 1133 LCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPN 1192

Query: 234  LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            LV Y++L+ G+C+    ++A  LL EM ++ G CSP+++TY +VI   C    +  A  +
Sbjct: 1193 LVTYNSLVHGLCKSRRFDQAEYLLREMTRKQG-CSPDIITYNTVIDGLCKSKRVDRAYKL 1251

Query: 294  LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              +M + G AP+ VT S +I   C    +DEA  +++ ++  G       Y +L+    +
Sbjct: 1252 FLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCK 1311

Query: 354  TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            T  L +A ++   +L+ G  PD +  S+ I  L   G++ +   L E + + G +   D+
Sbjct: 1312 TGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVP--DT 1369

Query: 414  DIHSVLLLGLCRKNHSVEAAKLARFM 439
              ++ LL G C  + + +A  L   M
Sbjct: 1370 VTYNTLLKGFCDASLTEDAVDLFEVM 1395



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 126/237 (53%), Gaps = 3/237 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  RL     W L  M +    PD + YN+V+   C+   +  A  L   M   
Sbjct: 481 LIHALCKAKRLPEAESW-LDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAA 539

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD++TY  +I  FC    L+ A  + + MK   C  ++V YSAL++G+C+ G++++A
Sbjct: 540 GVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKA 599

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++  EM   G  C+PN+VTY ++I   C    +++A  +L+ M    C P+ +T + LI
Sbjct: 600 FDVFQEML--GCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLI 657

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            G C    L+EA++++ ++   G +     Y +L+  L +T  L+  E+L  +M A+
Sbjct: 658 NGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEAT 714



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 139/276 (50%), Gaps = 10/276 (3%)

Query: 101  CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
            C+  R+     I  ++    +E GC  + V    ++  LC K+R  ++A ++LR+M    
Sbjct: 1169 CKTYRV----DIAYELFNLIQESGCTPNLVTYNSLVHGLC-KSRRFDQAEYLLREMTRKQ 1223

Query: 160  -LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
               PD I YN VI   C+   +  A +L   M    L PD +TY  +I   C    +++A
Sbjct: 1224 GCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 1283

Query: 219  CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
              + ++M ++G     + Y  L+DG C+ G++++ALE+L  +  +G    P+VVT++  I
Sbjct: 1284 NNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGS--YPDVVTFSIFI 1341

Query: 279  QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                 +G +++A  +L+ M   G  P+ VT +TL+KGFC     ++A  L + +   G  
Sbjct: 1342 DWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCE 1401

Query: 339  SSGGCYSSLVVELVRTKRLKEAEKLFSK-MLASGVK 373
                 Y++LV  LV  K  K+     SK M+ +G K
Sbjct: 1402 PDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFK 1437



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 131/279 (46%), Gaps = 38/279 (13%)

Query: 198  DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            D  T   +++      R +DA  +++   +  C+ N+  ++ L+ G+CR G +  A ELL
Sbjct: 843  DTYTCNCLLQALLRLKRPKDALQVYR--NKLCCSPNMFTFTILIHGLCRAGDIGTAYELL 900

Query: 258  GEMEKEG----------------------------------GDCSPNVVTYTSVIQIFCG 283
             EM + G                                  G C P+V TY++++     
Sbjct: 901  KEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVK 960

Query: 284  KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
             G + +A  +++ M + GC+PN VT S+L+ G C  G LDEA  L+ ++   G   +   
Sbjct: 961  SGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVT 1020

Query: 344  YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
            Y++++    +  R+ EA  L  +M+  G +P+ +  +V++   C  G+  +   L E + 
Sbjct: 1021 YNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV 1080

Query: 404  KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            + G++ ++ +  ++ LL   C+K+    A +L   M++K
Sbjct: 1081 EKGYVPNLFT--YNSLLDMFCKKDEVERACQLLSSMIQK 1117



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 143/338 (42%), Gaps = 53/338 (15%)

Query: 101  CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
            C+  R  Q   ++    E  +++GC   +     + +   K++  + A  +  +M    L
Sbjct: 1204 CKSRRFDQAEYLL---REMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 1260

Query: 161  RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
             PD + Y+ VI   C+   M  A+ +++ M      P  ITY ++I GFC  G L+ A  
Sbjct: 1261 APDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALE 1320

Query: 221  LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            + +++   G   ++V +S  +D + + G + +A ELL  M + G    P+ VTY ++++ 
Sbjct: 1321 ILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAG--LVPDTVTYNTLLKG 1378

Query: 281  FCGKGMMKEALGILDRMEALGCAPNRVTISTLI----------------------KGFC- 317
            FC   + ++A+ + + M   GC P+  T +TL+                       GF  
Sbjct: 1379 FCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKL 1438

Query: 318  -------------VEGNLDEAYQLID------------KVVAGGSVSSGGCYSSLVVELV 352
                         VE ++     ++D            KV  G    +   +S+++   V
Sbjct: 1439 NHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQRNVVLWSAMLGVYV 1498

Query: 353  RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
              K+ ++A  L+  M   GV+PD +    ++   C  G
Sbjct: 1499 FHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAG 1536



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 170  VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
            ++ +F + G    A ++ +GM       +++ + +M+  +    + E A GL++VM   G
Sbjct: 1462 IVDMFGKCGSPQDARKVFEGMD----QRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEG 1517

Query: 230  CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
               + V + +LL   C  G ++ A++    + ++ G   P V  ++ VI +    G++ E
Sbjct: 1518 VEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYG-LEPGVDHFSCVIDLLGRLGLVNE 1576

Query: 290  ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
            A    D M  + C P+  T + L+  + + G+ + A ++
Sbjct: 1577 A---EDLMLGMPCKPSAATWNCLLSAYKICGDFERALRV 1612


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 180/368 (48%), Gaps = 12/368 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+M R+++     ID++    + GC   V     + +   K + + EA  + ++M
Sbjct: 206 LLNGLCKMGRLEE----AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 261

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               L  DT+ Y  +IR   + G +  A  + K M      PD++T  +MI G C AGR+
Sbjct: 262 ALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRI 321

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
             A  +FK M+  G A N V YSAL+ G+C+   M+ ALE+L +M+K    C+P+ +TY 
Sbjct: 322 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK--AFCTPDTITYN 379

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I   C  G ++ A    D M   GC P+  T + L+ GFC  GN D A  + D + + 
Sbjct: 380 ILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSS 439

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
               +   Y +L+  L + ++L +A   F  M   G  PD    S ++  LC  G++  G
Sbjct: 440 HCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGG 499

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV-DKI 454
             L++++E+ G     +S   + L+  LC+ N   EA  L  F   ++  +  PY  + I
Sbjct: 500 CMLFDEMERSGV---ANSQTRTRLIFHLCKANRVDEAVSL--FNAIRKEGMPHPYAYNSI 554

Query: 455 VEHLKKSG 462
           +  L KS 
Sbjct: 555 ISTLIKSA 562



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 166/339 (48%), Gaps = 5/339 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           SV     + ++  + +   EA  +L+        PD   +N +I  +C   +   A  ++
Sbjct: 58  SVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVI 117

Query: 188 KGMGL-IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           + M     + P + T+  ++ G C +G++  A   F+    +GC  ++  Y+A++D + +
Sbjct: 118 REMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAK 177

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
              ++ A+ L+ ++   G  C+P + TY +++   C  G ++EA+ +L ++   GC P+ 
Sbjct: 178 NKKIQDAVALMEKITANG--CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDV 235

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT ++LI G   E    EAY+L  ++   G V    CY++L+  L++  ++ +A  ++  
Sbjct: 236 VTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKT 295

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M + G  PD +  S MI  LC  G++     +++ +E  G   + +  ++S L+ GLC+ 
Sbjct: 296 MTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGL--APNEVVYSALIHGLCKA 353

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
                A ++   M K          + +++ L KSGD E
Sbjct: 354 RKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVE 392



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 150/314 (47%), Gaps = 6/314 (1%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           +S   +  IF   + A LA E    L   P F  +      N ++ +F        A  L
Sbjct: 23  ISTDAVVKIFQCLKDADLAWELFQCLSS-PRFGFQHSVHTGNALLDVFARTKRHREAGNL 81

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGIC 245
           +K        PD+ T+  +I G+C A   E+A  + + M+  +G A +L  ++ +L G+C
Sbjct: 82  LKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLC 141

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G +  A++        G  C+ ++ TYT+++        +++A+ +++++ A GC P 
Sbjct: 142 KSGKVLAAMDHFETTTTNG--CTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPT 199

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
             T + L+ G C  G L+EA  L+ K+V  G       Y+SL+  L + KR  EA KLF 
Sbjct: 200 IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFK 259

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +M   G+  D +  + +IR L   G++ +   +Y+ +   G +  V +   S ++ GLC+
Sbjct: 260 EMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVT--LSTMIDGLCK 317

Query: 426 KNHSVEAAKLARFM 439
                 A ++ + M
Sbjct: 318 AGRIGAAVRIFKSM 331


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 177/344 (51%), Gaps = 18/344 (5%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           VV   +EEG   + K   V FN     LC+  R+   A  V  +M    L PD + YN +
Sbjct: 67  VVSLMREEG---NAKPNLVTFNSMVNGLCKAGRMEG-ARKVFDEMVREGLAPDVVSYNTL 122

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +  +C+ G +  +  +   M    L PD++T+ S+I   C AG LE A  L   M+  G 
Sbjct: 123 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL 182

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             N V ++AL+DG C+ G ++ AL  + EM K G    P+VV Y ++I  +C  G M  A
Sbjct: 183 RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG--IQPSVVCYNALINGYCKLGRMDLA 240

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             ++  MEA    P+ VT ST+I G+C  GNLD A+QL  K++  G +     YSSL+  
Sbjct: 241 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRG 300

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L   KRL +A +LF  ML  GV+PD    + +I   C  G V +   L++++ + G L  
Sbjct: 301 LCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 360

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           V +  +SVL+ GL +   + EA +L       +++ + P  D I
Sbjct: 361 VVT--YSVLINGLSKSARTKEAHRLLF-----KLYHEDPVPDNI 397



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 170/331 (51%), Gaps = 26/331 (7%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADE 185
           V    +I   C+   L  +A+ ++ +M E  LR + + +  +I  FC+KG   D + A E
Sbjct: 152 VTFTSLIHATCKAGNL-EQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVE 210

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
            M+  G+    P ++ Y ++I G+C  GR++ A  L + M+      ++V YS ++ G C
Sbjct: 211 EMRKCGI---QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 267

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           ++G+++ A +L  +M K+G    P+ +TY+S+I+  C +  + +A  + + M  LG  P+
Sbjct: 268 KVGNLDSAFQLNQKMLKKG--VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 325

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
             T +TLI G C EGN+++A  L D+++  G +     YS L+  L ++ R KEA +L  
Sbjct: 326 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 385

Query: 366 KMLASGVKPDG-------LACS--------VMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           K+      PD        L CS         +++  C+ G + E   +Y+ +    +   
Sbjct: 386 KLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNW--K 443

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +D  ++S+L+ G CR  +  +A    + ML+
Sbjct: 444 LDGSVYSILIHGHCRGGNVRKALSFHKQMLR 474



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 186/393 (47%), Gaps = 32/393 (8%)

Query: 57  LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQ-SSYRHSSFMYNRACEMSRIKQNPSIIID 115
           L   C +  LH      S+M  R  +   +  +S  H++      C+   ++Q     + 
Sbjct: 123 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHAT------CKAGNLEQ----AVA 172

Query: 116 VVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +V   +E G  ++ V    +I   C+K  L ++A+  + +M +  ++P  + YN +I  +
Sbjct: 173 LVAQMRERGLRMNEVTFTALIDGFCKKGFL-DDALLAVEEMRKCGIQPSVVCYNALINGY 231

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ G M  A EL++ M    + PD++TY ++I G+C  G L+ A  L + M + G   + 
Sbjct: 232 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 291

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + YS+L+ G+C    +  A EL   M + G    P+  TYT++I   C +G +++AL + 
Sbjct: 292 ITYSSLIRGLCEEKRLNDACELFENMLQLG--VQPDEFTYTTLIDGHCKEGNVEKALSLH 349

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL------- 347
           D M   G  P+ VT S LI G        EA++L+ K+     V     Y +L       
Sbjct: 350 DEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKA 409

Query: 348 ----VVELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               VV L++       +KEA+K++  ML    K DG   S++I   C GG V +    +
Sbjct: 410 EFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFH 469

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           + + + GF  +  S I   L+ GL  +   VEA
Sbjct: 470 KQMLRSGFSPNSTSTIS--LVRGLFEEGMVVEA 500



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 157/321 (48%), Gaps = 36/321 (11%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M    + P+   YN ++R  C +G +  A  ++  M      P+ +TY +++  FC AG 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 215 LEDACGLFKVMKRHGCA-ANLVAYSALLDGICRLGSMERALELLGEMEKEG--------- 264
           L+ A  +  +M+  G A  NLV ++++++G+C+ G ME A ++  EM +EG         
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 265 ----GDCS--------------------PNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
               G C                     P+VVT+TS+I   C  G +++A+ ++ +M   
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G   N VT + LI GFC +G LD+A   ++++   G   S  CY++L+    +  R+  A
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 240

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +L  +M A  VKPD +  S +I   C  G +   F L + + K G L   D+  +S L+
Sbjct: 241 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLP--DAITYSSLI 298

Query: 421 LGLCRKNHSVEAAKLARFMLK 441
            GLC +    +A +L   ML+
Sbjct: 299 RGLCEEKRLNDACELFENMLQ 319



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 22/332 (6%)

Query: 117 VEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           VE  ++ G   SV     + N  C+  R+ + A  ++R+M    ++PD + Y+ +I  +C
Sbjct: 209 VEEMRKCGIQPSVVCYNALINGYCKLGRM-DLARELIREMEAKRVKPDVVTYSTIISGYC 267

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G++ +A +L + M    + PD ITY S+I+G C   RL DAC LF+ M + G   +  
Sbjct: 268 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 327

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L+DG C+ G++E+AL L  EM ++G    P+VVTY+ +I         KEA  +L 
Sbjct: 328 TYTTLIDGHCKEGNVEKALSLHDEMIRKG--VLPDVVTYSVLINGLSKSARTKEAHRLLF 385

Query: 296 RMEALGCAPNRV---------------TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           ++      P+ +               ++  L+KGFC++G + EA ++   ++       
Sbjct: 386 KLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLD 445

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  YS L+    R   +++A     +ML SG  P+  +   ++R L   G V+E     +
Sbjct: 446 GSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQ 505

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           D+     L+  ++   S  L+ L RK  +V+A
Sbjct: 506 DLLTCCPLADAEA---SKALIDLNRKEGNVDA 534



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 128/248 (51%), Gaps = 3/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P++ TY  +++  C  GRLE+A G+   M+  GCA N V Y+ L+   CR G ++ A  +
Sbjct: 8   PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 67

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           +  M +EG +  PN+VT+ S++   C  G M+ A  + D M   G AP+ V+ +TL+ G+
Sbjct: 68  VSLMREEG-NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGY 126

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G L E+  +  ++   G V     ++SL+    +   L++A  L ++M   G++ + 
Sbjct: 127 CKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNE 186

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I   C  G + +     E++ K G   SV    ++ L+ G C+      A +L 
Sbjct: 187 VTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVC--YNALINGYCKLGRMDLARELI 244

Query: 437 RFMLKKRI 444
           R M  KR+
Sbjct: 245 REMEAKRV 252



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 102/196 (52%), Gaps = 3/196 (1%)

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +PNV TY  +++  C +G ++EA+G++  M   GCAPN VT +TL+  FC  G LD A +
Sbjct: 7   APNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAER 66

Query: 328 LIDKVVAGGSVSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           ++  +   G+       ++S+V  L +  R++ A K+F +M+  G+ PD ++ + ++   
Sbjct: 67  VVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGY 126

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           C  G + E   ++ ++ + G +  V +   + L+   C+  +  +A  L   M ++ + +
Sbjct: 127 CKVGCLHESLAVFSEMTQRGLVPDVVT--FTSLIHATCKAGNLEQAVALVAQMRERGLRM 184

Query: 447 QGPYVDKIVEHLKKSG 462
                  +++   K G
Sbjct: 185 NEVTFTALIDGFCKKG 200


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 202/385 (52%), Gaps = 25/385 (6%)

Query: 78  IRFFIWAALQSSYRHSSFM-YNRACE----MSRIKQNPSII-------IDVVEA-YKE-- 122
           +   +WA +++     +   ++RA +    +S +  NP ++       I VVE+ YKE  
Sbjct: 162 VDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMI 221

Query: 123 -EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
                V+V    V+ N LC+  +   +A  V+  M  +   P  I YN +I  +C+ G M
Sbjct: 222 RRRIGVNVVTFDVVINGLCKVGKF-QKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKM 280

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             AD L+K M    ++P+ IT+  +I GFC    +  A  +F+ M+R G   N+V Y++L
Sbjct: 281 FKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSL 340

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++G+C  G ++ AL L  +M   G    PNVVTY ++I  FC K M+KEA  +LD +   
Sbjct: 341 INGLCSNGKLDEALGLQDKMSGMG--LKPNVVTYNALINGFCKKKMLKEAREMLDDIGKR 398

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G APN +T +TLI  +   G +D+A+ L   ++  G   +   Y+ L+V   R   +KEA
Sbjct: 399 GLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEA 458

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED---IEKIGFLSSVDSDIHS 417
            KL  +M  +G+K D +  ++++  LC  G+  +   L ++   +EK G  +++ +  ++
Sbjct: 459 RKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVT--YN 516

Query: 418 VLLLGLCRKNHSVEAAKLARFMLKK 442
           VL+ G C K    EA +L   ML+K
Sbjct: 517 VLIKGFCNKGKLEEANRLLNEMLEK 541



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 136/249 (54%), Gaps = 7/249 (2%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTII 166
           +N +    V E  + +G   +V     + N LC   +L +EA+ +  KM    L+P+ + 
Sbjct: 313 ENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL-DEALGLQDKMSGMGLKPNVVT 371

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +I  FC+K  +  A E++  +G   L P++IT+ ++I  +  AGR++DA  L  +M 
Sbjct: 372 YNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMML 431

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G   N+  Y+ L+ G CR G+++ A +L  EME  G     ++VTY  ++   C KG 
Sbjct: 432 DTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEME--GNGLKADLVTYNILVDALCKKGE 489

Query: 287 MKEALGILDRM---EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            ++A+ +LD M   E  G   N VT + LIKGFC +G L+EA +L+++++  G + +   
Sbjct: 490 TRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTT 549

Query: 344 YSSLVVELV 352
           Y  L  E++
Sbjct: 550 YDILRDEMM 558



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 4/118 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C +  +  EA  + ++M    L+ D + YN ++   C+KG+   A  L+  M L+
Sbjct: 445 LIVGFCREGNVK-EARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLM 503

Query: 194 D---LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
           +      +I+TY  +IKGFCN G+LE+A  L   M   G   N   Y  L D +   G
Sbjct: 504 EKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKG 561


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 174/349 (49%), Gaps = 37/349 (10%)

Query: 121 KEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           +  GC+ +V     + +  C+  R+ +EA  +L+ M    ++P+ I YN +I   C +G 
Sbjct: 241 ERNGCLPNVVTYNTLIDAYCKMGRI-DEAFGLLKSMSSKGMQPNLISYNVIINGLCREGS 299

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           M  A E+++ MG     PD +TY +++ G+C  G    A  +   M R+G + ++V Y+A
Sbjct: 300 MKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTA 359

Query: 240 LLDGICRLGSMERALELLGEMEKEG---------------------------------GD 266
           L++ +C+  ++ RA+E   +M   G                                   
Sbjct: 360 LINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESG 419

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            SP+VVTY + I   C    M+EALG++  M   G AP+ V+ ST+I GFC +G LD A+
Sbjct: 420 FSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAF 479

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           Q+  ++V  G       YSSL+  L   +RL EA  L  +ML  G+ PD    + +I   
Sbjct: 480 QMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAY 539

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           C+ G + +   L++++   GFL   D+  +SVL+ GL ++  + EA +L
Sbjct: 540 CVEGDLNKALHLHDEMIHKGFLP--DAVTYSVLINGLNKQARTREAKRL 586



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 180/359 (50%), Gaps = 20/359 (5%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G   SV     + N   KAR  N AM    +M    LRP+   Y  +I  F  +G +  A
Sbjct: 349 GVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEA 408

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             ++  M      P ++TY + I G C   R+E+A G+ + M   G A ++V+YS ++ G
Sbjct: 409 YRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISG 468

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            CR G ++RA ++  EM ++G   SP+ VTY+S+IQ  C    + EA  +   M  +G  
Sbjct: 469 FCRKGELDRAFQMKQEMVEKG--VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLP 526

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+  T +TLI  +CVEG+L++A  L D+++  G +     YS L+  L +  R +EA++L
Sbjct: 527 PDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRL 586

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQ------VLEGFC---LYEDIEKIGFLSSVDSD 414
             K++     P  +    +I E C   +      +++GFC   L  + +++ F S V+ +
Sbjct: 587 LFKLIYEESVPSDVTYDTLI-ENCSNIEFKSVVALIKGFCMKGLMHEADRV-FESMVERN 644

Query: 415 ------IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG-DEEL 466
                 +++V++ G CR  +  +A  L + M+          V  +++ L K G +EE+
Sbjct: 645 HKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEM 703



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 152/283 (53%), Gaps = 6/283 (2%)

Query: 162 PDTIIYNNVIRLFCE-KGDM-IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           P  + YN+V+      +G + ++A+E+ + M    + P++ TY  +I+GFC+ G L+   
Sbjct: 175 PGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGL 234

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           G F  M+R+GC  N+V Y+ L+D  C++G ++ A  LL  M  +G    PN+++Y  +I 
Sbjct: 235 GCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKG--MQPNLISYNVIIN 292

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C +G MKEA  IL+ M   G  P+ VT +TL+ G+C EGN  +A  +  ++V  G   
Sbjct: 293 GLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSP 352

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           S   Y++L+  + + + L  A + F +M   G++P+    + +I      G + E + + 
Sbjct: 353 SVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRIL 412

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            ++ + GF  SV +  ++  + G C      EA  + + M++K
Sbjct: 413 NEMTESGFSPSVVT--YNAFIHGHCVLERMEEALGVVQEMVEK 453



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR-LGSME-RALELLGEMEK 262
           M+K + +   ++ A     + K  G    +++Y+++LD I R  GS++  A E+  EM +
Sbjct: 148 MVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIR 207

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
                SPNV TY  +I+ FC  G +++ LG    ME  GC PN VT +TLI  +C  G +
Sbjct: 208 --SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRI 265

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           DEA+ L+  + + G   +   Y+ ++  L R   +KEA ++  +M   G  PD +  + +
Sbjct: 266 DEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTL 325

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +   C  G   +   ++ ++ + G   SV +  ++ L+  +C+
Sbjct: 326 LNGYCKEGNFHQALVIHAEMVRNGVSPSVVT--YTALINSMCK 366



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 153/375 (40%), Gaps = 45/375 (12%)

Query: 38  HLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFF-----IWAALQSSYRH 92
           H +   N +  ++ T  A ++S C    L+R      QM IR        +  L   +  
Sbjct: 342 HAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR 401

Query: 93  SSFM---YNRACEMSRIKQNPSII------------------IDVVEAYKEEGCVVSV-K 130
              +   Y    EM+    +PS++                  + VV+   E+G    V  
Sbjct: 402 QGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVS 461

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
              +I   C K  L + A  + ++M E  + PD + Y+++I+  CE   +  A +L + M
Sbjct: 462 YSTIISGFCRKGEL-DRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM 520

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
             + L PD  TY ++I  +C  G L  A  L   M   G   + V YS L++G+ +    
Sbjct: 521 LDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQART 580

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQI---------------FCGKGMMKEALGILD 295
             A  LL ++  E  +  P+ VTY ++I+                FC KG+M EA  + +
Sbjct: 581 REAKRLLFKLIYE--ESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFE 638

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M      P     + +I G C  GNL +A+ L  +++  G V       +L+  L +  
Sbjct: 639 SMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 698

Query: 356 RLKEAEKLFSKMLAS 370
             +E  ++    L S
Sbjct: 699 MNEEMSEVIGDTLRS 713



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 3/135 (2%)

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           ++ +I   C K  L +EA  V   M E + +P   +YN +I   C  G++  A  L K M
Sbjct: 617 VVALIKGFCMKG-LMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 675

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC-RLGS 249
                 P  +T +++IK     G  E+   +     R  C  N    + +L  I  + G+
Sbjct: 676 IHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLR-SCRLNEAELAKVLVEINHKEGN 734

Query: 250 MERALELLGEMEKEG 264
           ME  L +L +M K+G
Sbjct: 735 MEAVLNVLTDMAKDG 749


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 205/440 (46%), Gaps = 46/440 (10%)

Query: 54  KAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSII 113
           K +L  +    +L +     +++G +F+ WAA    ++H+ F +N+   +     +P+  
Sbjct: 72  KGRLHPSVAAAILAQ-LDGNAELGTQFYDWAAALPGFKHTIFSFNKYLNLLVKSGSPAKA 130

Query: 114 IDVVEA--------------------YKEEGCV---------------VSVKMMKVIFNL 138
           ID+  +                    YK  G V                      V+ +L
Sbjct: 131 IDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRRIRSSSRSVADYNIVLQSL 190

Query: 139 CEKARLANEAMWVLR-KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           C     A  A+ + R +M    + P  + YN +I   C+  ++ A  EL + +     +P
Sbjct: 191 CRAGETA-RALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHP 249

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D++TY ++I   C AG LE+A  L   M    C  N+V YS L++G+C++G ++ A EL+
Sbjct: 250 DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELI 309

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME--ALGCAPNRVTISTLIKG 315
            EM ++  D  PN++TY S +   C + M  EA  ++  +   +L  +P+ VT STLI G
Sbjct: 310 QEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDG 369

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C  G +DEA  + D ++AGG V +   Y++LV  L +  +++ A  +   M+  GV PD
Sbjct: 370 LCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPD 429

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  SV++   C   +V E   L   +   G   +V +   + ++ GLC+ + S EA ++
Sbjct: 430 VITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVT--FNSIIDGLCKSDRSGEAFQM 487

Query: 436 ARFMLKKRIWLQGPYVDKIV 455
              M  K     G   DKI 
Sbjct: 488 FDDMALK----HGLVPDKIT 503



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 173/347 (49%), Gaps = 18/347 (5%)

Query: 125  CVVSVKMMKVIFN-LCEKARLANEAMWVLRKM--PEFDLRPDTIIYNNVIRLFCEKGDMI 181
            CV +V    V+ N LC+  R+ +EA  ++++M     D+ P+ I YN+ +   C++  M 
Sbjct: 776  CVPNVVTYSVLINGLCKVGRI-DEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMA 834

Query: 182  AADELMKGM--GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
             A ELM+ +  G + + PD +T+ ++I G C  G+ ++AC +F  M   G   N+V Y+ 
Sbjct: 835  EACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNV 894

Query: 240  LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
            L++G+C+   MERA  ++  M  +G   +P+V+TY+ ++  FC    + EAL +L  M +
Sbjct: 895  LMNGLCKTDKMERAHAMIESMVDKG--VTPDVITYSVLVDAFCKASHVDEALELLHGMAS 952

Query: 300  LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV-VAGGSVSSGGCYSSLVVELVRTKRLK 358
             GC PN VT +++I G C      EA+Q+ D + +  G       Y +L+  L RT    
Sbjct: 953  RGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAG 1012

Query: 359  EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
            +AE L   M      PD  A +  I  L   G V        ++E +      D    ++
Sbjct: 1013 QAEVLLDAM----PDPDTYAFNCCINGLSKLGDVSRALHRMLELELVP-----DKVTFNI 1063

Query: 419  LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            L+ G C+  +  +A+ L   M+ K +         +++ L K+G  E
Sbjct: 1064 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVE 1110



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 149/314 (47%), Gaps = 6/314 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+   L    M +  ++ E    PD + YN +I   C+ GD+  A  L  
Sbjct: 217 VTYNTIINGLCKSNELG-AGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHG 275

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA--ANLVAYSALLDGICR 246
            M      P+++TY  +I G C  GR+++A  L + M R  C    N++ Y++ LDG+C+
Sbjct: 276 DMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCK 335

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
                 A EL+  +       SP+ VT++++I   C  G + EA  + D M A G  PN 
Sbjct: 336 QSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNV 395

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           +T + L+ G C    ++ A+ +I+ +V  G       YS LV    +  R+ EA +L   
Sbjct: 396 ITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHG 455

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE-KIGFLSSVDSDIHSVLLLGLCR 425
           M + G  P+ +  + +I  LC   +  E F +++D+  K G +   D   +  L+ GL R
Sbjct: 456 MASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVP--DKITYCTLIDGLFR 513

Query: 426 KNHSVEAAKLARFM 439
              + +A  L   M
Sbjct: 514 TGRAGQAEALLDAM 527



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 154/299 (51%), Gaps = 7/299 (2%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           A +A  +L  MP+    PDT  +N  I    + GD+  A ++   M  ++L PD +T+  
Sbjct: 517 AGQAEALLDAMPD----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNI 572

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C AG  E A  LF+ M       +++ + AL+DG+C+ G +E A ++L  M   G
Sbjct: 573 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 632

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PNVVTY +++   C  G ++EA   L+ M + GC P+ +T  +L+   C     D+
Sbjct: 633 --VPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDD 690

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A QL+ ++ + G       Y+ LV  L ++ + ++A  +  +M+  G  PD +  + +I 
Sbjct: 691 ALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLID 750

Query: 385 ELCLGGQVLEGFCLYEDI-EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            LC  G + E   L+ D+  ++      +   +SVL+ GLC+     EA +L + M++K
Sbjct: 751 SLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRK 809



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 8/305 (2%)

Query: 141  KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID---LYP 197
            K+    +A+ VL +M      PD + YN +I   C+ GD+  A  L   M         P
Sbjct: 719  KSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVP 778

Query: 198  DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA--ANLVAYSALLDGICRLGSMERALE 255
            +++TY  +I G C  GR+++A  L + M R  C    N++ Y++ LDG+C+   M  A E
Sbjct: 779  NVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACE 838

Query: 256  LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
            L+  +       SP+ VT++++I   C  G   EA  + D M A G  PN VT + L+ G
Sbjct: 839  LMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNG 898

Query: 316  FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
             C    ++ A+ +I+ +V  G       YS LV    +   + EA +L   M + G  P+
Sbjct: 899  LCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPN 958

Query: 376  GLACSVMIRELCLGGQVLEGFCLYEDIE-KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
             +  + +I  LC   Q  E F +++D+  K G   + D   +  L+ GL R   + +A  
Sbjct: 959  VVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGL--APDKITYCTLIDGLFRTGWAGQAEV 1016

Query: 435  LARFM 439
            L   M
Sbjct: 1017 LLDAM 1021



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 163/367 (44%), Gaps = 47/367 (12%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC+  R+  EA   L +M      PD+I Y +++   C       A +L+ 
Sbjct: 638 VTYNALVHGLCKSGRI-EEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVS 696

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD------ 242
            +      PD +TY  ++ G   +G+ E A  + + M   G   ++V Y+ L+D      
Sbjct: 697 ELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAG 756

Query: 243 --------------------------------GICRLGSMERALELLGEMEKEGGDCSPN 270
                                           G+C++G ++ A EL+ EM ++  D  PN
Sbjct: 757 DLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPN 816

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRME--ALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           ++TY S +   C + MM EA  ++  +   +L  +P+ VT STLI G C  G  DEA  +
Sbjct: 817 IITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNV 876

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            D ++AGG V +   Y+ L+  L +T +++ A  +   M+  GV PD +  SV++   C 
Sbjct: 877 FDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCK 936

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
              V E   L   +   G   +V +   + ++ GLC+ + S EA ++   M  K     G
Sbjct: 937 ASHVDEALELLHGMASRGCTPNVVT--FNSIIDGLCKSDQSGEAFQMFDDMTLK----HG 990

Query: 449 PYVDKIV 455
              DKI 
Sbjct: 991 LAPDKIT 997



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 166/372 (44%), Gaps = 40/372 (10%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+  ++++  ++I    E+  ++G    V    V+ +   KA   +EA+ +L  M
Sbjct: 401 LVNGLCKADKMERAHAMI----ESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM 456

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMIKGFCNAGR 214
                 P+ + +N++I   C+      A ++   M L   L PD ITY ++I G    GR
Sbjct: 457 ASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGR 516

Query: 215 LEDACGLFKVMKRHGCAA-------------------------------NLVAYSALLDG 243
              A  L   M      A                               + V ++ L+ G
Sbjct: 517 AGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAG 576

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+ G+ E+A  L  EM  +  +  P+V+T+ ++I   C  G ++ A  ILD M  LG  
Sbjct: 577 ACKAGNFEQASALFEEMVAK--NLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVP 634

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN VT + L+ G C  G ++EA Q ++++V+ G V     Y SLV  L R  R  +A +L
Sbjct: 635 PNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQL 694

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
            S++ + G  PD +  ++++  L   GQ  +   + E  E +G     D   ++ L+  L
Sbjct: 695 VSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLE--EMVGKGHHPDVVTYNTLIDSL 752

Query: 424 CRKNHSVEAAKL 435
           C+     EA +L
Sbjct: 753 CKAGDLEEARRL 764



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 177/385 (45%), Gaps = 16/385 (4%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + +  C+  +I +  S+  D++      G V +V     + N   KA     A  ++ 
Sbjct: 364 STLIDGLCKCGQIDEACSVFDDMIAG----GYVPNVITYNALVNGLCKADKMERAHAMIE 419

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M +  + PD I Y+ ++  FC+   +  A EL+ GM      P+++T+ S+I G C + 
Sbjct: 420 SMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSD 479

Query: 214 RLEDACGLFKVMK-RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           R  +A  +F  M  +HG   + + Y  L+DG+ R G   +A  LL  M        P+  
Sbjct: 480 RSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMP------DPDTY 533

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
            +   I      G +  AL + +RM  L   P++VT + LI G C  GN ++A  L +++
Sbjct: 534 AFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEM 593

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           VA         + +L+  L +  +++ A  +   M   GV P+ +  + ++  LC  G++
Sbjct: 594 VAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRI 653

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452
            E     E++   G +   DS  +  L+  LCR + + +A +L    LK   W       
Sbjct: 654 EEACQFLEEMVSSGCVP--DSITYGSLVYALCRASRTDDALQLVS-ELKSFGWDPDTVTY 710

Query: 453 KI-VEHLKKSGD-EELITNLPKIGG 475
            I V+ L KSG  E+ IT L ++ G
Sbjct: 711 NILVDGLWKSGQTEQAITVLEEMVG 735



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 116/271 (42%), Gaps = 47/271 (17%)

Query: 124  GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
            G V +V    V+ N LC+  ++   A  ++  M +  + PD I Y+ ++  FC+   +  
Sbjct: 884  GYVPNVVTYNVLMNGLCKTDKM-ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDE 942

Query: 183  ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK-RHGCAANLVAYSALL 241
            A EL+ GM      P+++T+ S+I G C + +  +A  +F  M  +HG A + + Y  L+
Sbjct: 943  ALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLI 1002

Query: 242  DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            DG+ R G   +A  LL  M        P+   +   I      G +  A   L RM  L 
Sbjct: 1003 DGLFRTGWAGQAEVLLDAMP------DPDTYAFNCCINGLSKLGDVSRA---LHRMLELE 1053

Query: 302  CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
              P++VT + LI G C  GN +                                   +A 
Sbjct: 1054 LVPDKVTFNILIAGACKAGNFE-----------------------------------QAS 1078

Query: 362  KLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
             LF +M+A  ++PD +    +I  LC  GQV
Sbjct: 1079 ALFEEMVAKNLQPDVMTFGALIDGLCKAGQV 1109



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 7/113 (6%)

Query: 145  ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            A +A  +L  MP+    PDT  +N  I    + GD+  A   +  M  ++L PD +T+  
Sbjct: 1011 AGQAEVLLDAMPD----PDTYAFNCCINGLSKLGDVSRA---LHRMLELELVPDKVTFNI 1063

Query: 205  MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            +I G C AG  E A  LF+ M       +++ + AL+DG+C+ G +E   +++
Sbjct: 1064 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 172/320 (53%), Gaps = 6/320 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E GC+ ++     + + LC    L +EA  +L +M E  L+PD   Y+ ++   C+ G +
Sbjct: 105 ENGCMPNLVTYNTLLSGLCRNG-LMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKI 163

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A ++ +     D  PD++ Y ++I G C  GRL++AC LF+ M+ + C  ++V ++AL
Sbjct: 164 DMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTAL 223

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG+C+   ++ A ++L  ME    +C+PNV+TY+S+I   C  G +++A  +  RM   
Sbjct: 224 MDGLCKGDRLQEAQQVLETMEDR--NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR 281

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN VT ++LI GFC+   +D A  L++++ A G +     Y++L+  L +T R  EA
Sbjct: 282 GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 341

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +LF  M A    PD +  S +I   C   ++     L++D+ K   L  V +   S L+
Sbjct: 342 NRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVT--FSTLV 399

Query: 421 LGLCRKNHSVEAAKLARFML 440
            G C      +A +L   M+
Sbjct: 400 EGYCNAGLVDDAERLLEEMV 419



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 178/386 (46%), Gaps = 39/386 (10%)

Query: 116 VVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           V+E  ++  C  +V     +I  LC+  ++  +A  V ++M    + P+ + YN++I  F
Sbjct: 239 VLETMEDRNCTPNVITYSSLIDGLCKTGQV-RDAQEVFKRMIVRGIEPNVVTYNSLIHGF 297

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C    + +A  LM+ M      PDIITY ++I G C  GR  +A  LF  MK   C  ++
Sbjct: 298 CMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDV 357

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKE------------------------------- 263
           + YS L+ G C+L  ++ A  L  +M K+                               
Sbjct: 358 ITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEE 417

Query: 264 --GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
               DCSP+V TYTS++  FC  G M EA  +L RM   GC PN VT + LI  FC  G 
Sbjct: 418 MVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 477

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM-LASGVKPDGLACS 380
              AY+L++++V  G   +   Y SL+     T  L+EA K+  ++      K D  A  
Sbjct: 478 PTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYR 537

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK-LARFM 439
           VM+  LC  G++     L E I++ G  +    DI+  L+ GLC+     +A + L    
Sbjct: 538 VMMDGLCRTGRMSAALELLEAIKQSG--TPPRHDIYVALIRGLCQGKELGKAMEVLEEMT 595

Query: 440 LKKRIWLQGPYVDKIVEHLKKSGDEE 465
           L ++        + +++ L + G  E
Sbjct: 596 LSRKSRPNAEAYEAVIQELAREGRHE 621



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 176/342 (51%), Gaps = 8/342 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           + M +  C+ +R+ +  +    +    K++G V +     V+ N   K    + A  +L+
Sbjct: 11  TIMIDGLCKANRLPEATTYFAKM----KKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLK 66

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M E  L P+ + Y+ VI  FC +  +  A +L + M      P+++TY +++ G C  G
Sbjct: 67  EMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG 126

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            +++A  L   M+  G   +  +Y  L+ G+C+ G ++ AL++    +   GDC P+VV 
Sbjct: 127 LMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFE--DNSNGDCPPDVVA 184

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y+++I   C  G + EA  + ++M    C P+ VT + L+ G C    L EA Q+++ + 
Sbjct: 185 YSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETME 244

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
                 +   YSSL+  L +T ++++A+++F +M+  G++P+ +  + +I   C+   V 
Sbjct: 245 DRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVD 304

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
               L E++   G L  + +  ++ L+ GLC+   + EA +L
Sbjct: 305 SALLLMEEMTATGCLPDIIT--YNTLIDGLCKTGRAPEANRL 344



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 165/321 (51%), Gaps = 6/321 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           + E  +E  C   V     + + LC+  RL  EA  VL  M + +  P+ I Y+++I   
Sbjct: 204 LFEKMRENSCEPDVVTFTALMDGLCKGDRL-QEAQQVLETMEDRNCTPNVITYSSLIDGL 262

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ G +  A E+ K M +  + P+++TY S+I GFC    ++ A  L + M   GC  ++
Sbjct: 263 CKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDI 322

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + Y+ L+DG+C+ G    A  L G+M+ +   C+P+V+TY+ +I  FC    +  A  + 
Sbjct: 323 ITYNTLIDGLCKTGRAPEANRLFGDMKAKF--CNPDVITYSCLIGGFCKLERIDMARTLF 380

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           D M      P+ VT STL++G+C  G +D+A +L++++VA         Y+SLV    + 
Sbjct: 381 DDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKV 440

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            R+ EA ++  +M   G +P+ +  + +I   C  G+    + L E++   G   +V + 
Sbjct: 441 GRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVIT- 499

Query: 415 IHSVLLLGLCRKNHSVEAAKL 435
            +  L+ G C      EA K+
Sbjct: 500 -YRSLIGGFCGTGDLEEARKM 519



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 140/267 (52%), Gaps = 8/267 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           ++IT+  MI G C A RL +A   F  MK+ G   N   Y+ L++G C++  + RA  LL
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM++ G   +PNVVTY++VI  FC +  +  A  +  +M   GC PN VT +TL+ G C
Sbjct: 66  KEMKESG--LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 123

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G +DEAY+L+D++   G       Y +L+  L +T ++  A K+F         PD +
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 183

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKL 435
           A S +I  LC  G++ E   L+E + +    +S + D+   + L+ GLC+ +   EA ++
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRE----NSCEPDVVTFTALMDGLCKGDRLQEAQQV 239

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              M  +           +++ L K+G
Sbjct: 240 LETMEDRNCTPNVITYSSLIDGLCKTG 266



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 4/243 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + ++ ++  +C  G +  A+ L++ M   D  PD+ TY S++ GFC  GR+ +A  +
Sbjct: 390 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 449

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            K M + GC  N+V Y+AL+D  CR G    A +LL EM   G    PNV+TY S+I  F
Sbjct: 450 LKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEM--VGNGVQPNVITYRSLIGGF 507

Query: 282 CGKGMMKEALGILDRMEA-LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           CG G ++EA  +L+R+E    C  +      ++ G C  G +  A +L++ +   G+   
Sbjct: 508 CGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPR 567

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKM-LASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
              Y +L+  L + K L +A ++  +M L+   +P+  A   +I+EL   G+  E   L 
Sbjct: 568 HDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALA 627

Query: 400 EDI 402
           +++
Sbjct: 628 DEL 630



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 4/206 (1%)

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           C  N++ ++ ++DG+C+   +  A     +M+K+G    PN  TY  +I  FC    +  
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKG--TVPNEWTYNVLINGFCKVHKVHR 60

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  +L  M+  G APN VT ST+I GFC +  +D AY+L  ++V  G + +   Y++L+ 
Sbjct: 61  AYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 120

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L R   + EA +L  +M   G++PD  +   ++  LC  G++     ++ED        
Sbjct: 121 GLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPP 180

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKL 435
            V +  +S L+ GLC+     EA KL
Sbjct: 181 DVVA--YSTLIAGLCKTGRLDEACKL 204



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 2/160 (1%)

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +C  NV+T+T +I   C    + EA     +M+  G  PN  T + LI GFC    +  A
Sbjct: 2   ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRA 61

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           Y L+ ++   G   +   YS+++    R  ++  A KLF +M+ +G  P+ +  + ++  
Sbjct: 62  YLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSG 121

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           LC  G + E + L +++ + G     D   +  L+ GLC+
Sbjct: 122 LCRNGLMDEAYELLDEMRERGL--QPDKFSYDTLMAGLCK 159


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 178/348 (51%), Gaps = 7/348 (2%)

Query: 134 VIFNLCEKARLANEAMWVLR-KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           V+ +LC     A  A+ + R +M    + P  + YN +I   C+  D+ A  EL + +  
Sbjct: 7   VLQSLCRAGDTA-RALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVE 65

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
              +PD++TY ++I   C AG LE+A  L   M   GC  N+V YS L++G+C++G ++ 
Sbjct: 66  RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDE 125

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME--ALGCAPNRVTIS 310
           A EL+ EM ++  D  PN++TY S +   C + M  EA  ++  +   +L  +P+ VT S
Sbjct: 126 ARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFS 185

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           TLI G C  G +DEA  + D ++AGG V +   Y++LV  L +  +++ A  +   M+  
Sbjct: 186 TLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDK 245

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV---DSDIHSVLLLGLCRKN 427
           GV PD +  SV++   C   +V E   L   +   G   +V   D    ++L+ G C+  
Sbjct: 246 GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAG 305

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIGG 475
           +  +A+ L   M+ K +         +++ L K+G  E   ++  + G
Sbjct: 306 NFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMG 353



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 177/372 (47%), Gaps = 20/372 (5%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           M   ACE+ R  ++ S+ +             +V    +I  LC+  ++ +EA  V   M
Sbjct: 159 MTAEACELMRSLRDGSLRVSPD----------TVTFSTLIDGLCKCGQI-DEACSVFDDM 207

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
                 P+ I YN ++   C+   M  A  +++ M    + PD+ITY  ++  FC A R+
Sbjct: 208 IAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRV 267

Query: 216 EDACGLFKVMKRHGCAANL-----VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           ++A  L   M   GC  N+     V ++ L+ G C+ G+ E+A  L  EM  +  +  P+
Sbjct: 268 DEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAK--NLQPD 325

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           V+T+ ++I   C  G ++ A  ILD M  LG  PN VT + L+ G C  G ++EA Q ++
Sbjct: 326 VMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLE 385

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++V+ G V     Y SLV  L R  R  +A +L S++ + G  PD +  ++++  L   G
Sbjct: 386 EMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSG 445

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
           +  +   + E  E +G     DS   +    GL R  +     +L R +L K +      
Sbjct: 446 KTEQAITVLE--EMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATT 503

Query: 451 VDKIVEHLKKSG 462
              I++ + +SG
Sbjct: 504 CSSILDWVCRSG 515



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 146/313 (46%), Gaps = 11/313 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+   L    M +  ++ E    PD + YN +I   C+ GD+  A  L  
Sbjct: 38  VTYNTIINGLCKSNDLG-AGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHG 96

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA--NLVAYSALLDGICR 246
            M      P+++TY  +I G C  GR+++A  L + M R  C    N++ Y++ LDG+C+
Sbjct: 97  DMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCK 156

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
                 A EL+  +       SP+ VT++++I   C  G + EA  + D M A G  PN 
Sbjct: 157 QSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNV 216

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           +T + L+ G C    ++ A+ +I+ +V  G       YS LV    +  R+ EA +L   
Sbjct: 217 ITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHG 276

Query: 367 MLASGVK-----PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           M + G       PD +  +++I   C  G   +   L+E++        V +     L+ 
Sbjct: 277 MASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMT--FGALID 334

Query: 422 GLCRKNHSVEAAK 434
           GLC+    VEAA+
Sbjct: 335 GLCKAGQ-VEAAR 346



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 153/303 (50%), Gaps = 13/303 (4%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+  ++++  ++I    E+  ++G    V    V+ +   KA   +EA+ +L  M
Sbjct: 222 LVNGLCKADKMERAHAMI----ESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM 277

Query: 156 ------PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
                 P   L PD + +N +I   C+ G+   A  L + M   +L PD++T+ ++I G 
Sbjct: 278 ASRGCTPNV-LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGL 336

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C AG++E A  +  +M   G   N+V Y+AL+ G+C+ G +E A + L EM   G  C P
Sbjct: 337 CKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSG--CVP 394

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           + +TY S++   C      +AL ++  +++ G  P+ VT + L+ G    G  ++A  ++
Sbjct: 395 DSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVL 454

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           +++V  G       +++    L R+  L    +L   +LA G+ PD   CS ++  +C  
Sbjct: 455 EEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRS 514

Query: 390 GQV 392
           G++
Sbjct: 515 GKL 517



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 40/246 (16%)

Query: 237 YSALLDGICRLGSMERALELL-GEMEKEG-------------GDCS-------------- 268
           Y+ +L  +CR G   RALE+  GEM ++G             G C               
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 269 ------PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
                 P+VVTY ++I   C  G ++EA  +   M + GC PN VT S LI G C  G +
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 323 DEAYQLIDKVV--AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG--VKPDGLA 378
           DEA +LI ++   +   + +   Y+S +  L +     EA +L   +      V PD + 
Sbjct: 124 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 183

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            S +I  LC  GQ+ E   +++D+   G++ +V +  ++ L+ GLC+ +    A  +   
Sbjct: 184 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVIT--YNALVNGLCKADKMERAHAMIES 241

Query: 439 MLKKRI 444
           M+ K +
Sbjct: 242 MVDKGV 247


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 187/370 (50%), Gaps = 47/370 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           VI   C++  + + A  +LR+M   D + PD + Y +V+   C  G M  A E+++ M L
Sbjct: 51  VINGFCKQGEM-DRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKL 109

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC---------------------- 230
             + PD  T+ ++I G+CNA ++++A  L+K +    C                      
Sbjct: 110 KGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGE 169

Query: 231 ----------------AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
                             ++V Y+AL+DG C+ G++E+A+++LG M  EG  C PNVVTY
Sbjct: 170 AYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVM--EGRKCVPNVVTY 227

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           +S++   C  G + +AL +  RM + GC PN VT +TLI G C    +D A  L+D++ A
Sbjct: 228 SSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTA 287

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
               +    Y++L+    R  R++EA++LF +M A    PD +  + ++R  C   ++ E
Sbjct: 288 TCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEE 347

Query: 395 GFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452
              L E+++     + +D D+  +S+++ G  R    VEAA+  + M+ + +        
Sbjct: 348 ARFLLENMKTA---AGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYS 404

Query: 453 KIVEHLKKSG 462
            +++ L K+G
Sbjct: 405 SLIDGLCKAG 414



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 177/343 (51%), Gaps = 19/343 (5%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMP---EFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           +V    +I  LC + R+  EA  + ++M    +   +PD + Y  +I  FC+ G++   +
Sbjct: 151 AVSSSALITGLCRERRIG-EAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNL---E 206

Query: 185 ELMKGMGLID---LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
           + MK +G+++     P+++TY S++ G C AG L+ A  LF+ M   GC  N+V Y+ L+
Sbjct: 207 KAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLI 266

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G+C    ++ A  L+ EM      C  + V+Y +++  +C  G ++EA  +   M A  
Sbjct: 267 HGLCAAHKVDAARLLMDEMTATC--CPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKS 324

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKV-VAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           C P+R+T + L++GFC    L+EA  L++ +  A G       YS +V    R KR  EA
Sbjct: 325 CLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEA 384

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +   +M+A  V P+ +  S +I  LC  G+V     + ++++K   ++      +++++
Sbjct: 385 AEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVT------YTIVI 438

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            GLC  + + EA  L   M+ KR+       + ++  L + GD
Sbjct: 439 EGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGD 481



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 170/367 (46%), Gaps = 55/367 (14%)

Query: 114 IDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +D+      +GCV +V     +I  LC  A   + A  ++ +M       DT+ YN ++ 
Sbjct: 244 LDLFRRMTSKGCVPNVVTYTTLIHGLC-AAHKVDAARLLMDEMTATCCPADTVSYNALLD 302

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR----- 227
            +C  G +  A +L K M      PD ITY  +++GFCNA RLE+A  L + MK      
Sbjct: 303 GYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 362

Query: 228 -------------------------------HGCAANLVAYSALLDGICRLGSMERALEL 256
                                             A N V YS+L+DG+C+ G +  A+E+
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV 422

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  ++K      P+VVTYT VI+  CG    +EAL +L+ M      P+  T +++I   
Sbjct: 423 LKNVDK------PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGAL 476

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML-------- 368
           C  G++DEA++L+  + A G       Y++L+    RT R++ A +LF  M         
Sbjct: 477 CRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSS 536

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           A+ + P+  A S +IR LC   ++ +   + E++ +       + D  ++ + GL R   
Sbjct: 537 AANLVPEQ-AFSALIRGLCKAREIDKAMAVVEEL-RSRECEPAEEDCLAI-VDGLLRAGR 593

Query: 429 SVEAAKL 435
           + EA KL
Sbjct: 594 TEEAGKL 600



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 166/386 (43%), Gaps = 42/386 (10%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC+   L ++A+ + R+M      P+ + Y  +I   C    + AA  LM 
Sbjct: 225 VTYSSLLHGLCKAGDL-DQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMD 283

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M       D ++Y +++ G+C  GR+E+A  LFK M    C  + + Y+ L+ G C   
Sbjct: 284 EMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNAS 343

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E A  LL  M+   G   P+VVTY+ V+  +       EA   +  M A   APN VT
Sbjct: 344 RLEEARFLLENMKTAAG-IDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVT 402

Query: 309 ISTLIKGFCVEG----------NLD---------------------EAYQLIDKVVAGGS 337
            S+LI G C  G          N+D                     EA  L++++V    
Sbjct: 403 YSSLIDGLCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRV 462

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
             S G ++S++  L R   + EA KL   M A G++P  +  + ++      G++   + 
Sbjct: 463 EPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYE 522

Query: 398 LYEDIEKIGFLSS-----VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452
           L+E + +    SS     V     S L+ GLC+     +A  +   +  +          
Sbjct: 523 LFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCL 582

Query: 453 KIVEHLKKSGDEE----LITNLPKIG 474
            IV+ L ++G  E    LI ++ K+G
Sbjct: 583 AIVDGLLRAGRTEEAGKLINSISKVG 608



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 124/250 (49%), Gaps = 7/250 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRLGSMERALE 255
           P+  TY  ++ G C A     A  + K M+     A +LV YS +++G C+ G M+RA E
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           +L EM    G  +P+VVTYTSV+   C  G M  A  ++  M+  G  P++ T S LI G
Sbjct: 67  ILREMVTRDG-MAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITG 125

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA---SGV 372
           +C    +DEA +L  +++           S+L+  L R +R+ EA +LF +M        
Sbjct: 126 WCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAW 185

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           KPD +  + +I   C  G + +   +   +E    + +V +  +S LL GLC+     +A
Sbjct: 186 KPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVT--YSSLLHGLCKAGDLDQA 243

Query: 433 AKLARFMLKK 442
             L R M  K
Sbjct: 244 LDLFRRMTSK 253



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 42/203 (20%)

Query: 303 APNRVT------------------------------------ISTLIKGFCVEGNLDEAY 326
           APN  T                                     ST+I GFC +G +D A 
Sbjct: 6   APNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRAC 65

Query: 327 QLIDKVVA-GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           +++ ++V   G       Y+S+V  L R  ++  A ++  +M   GV+PD    S +I  
Sbjct: 66  EILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITG 125

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
            C   +V E   LY++I  +     +D+   S L+ GLCR+    EA +L + M  +   
Sbjct: 126 WCNARKVDEALKLYKEI--LTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDG 183

Query: 446 LQGPYV---DKIVEHLKKSGDEE 465
              P V     +++   KSG+ E
Sbjct: 184 AWKPDVVTYTALIDGFCKSGNLE 206


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 180/336 (53%), Gaps = 9/336 (2%)

Query: 129  VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
            V +  ++   C+  R   EA+ ++  M E  L P+ +IYN VI   C+  D+  A E+  
Sbjct: 686  VTLGSLLNGFCQGNRF-QEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFY 744

Query: 189  GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            GM    +  D +TY ++I G CN+GR  DA  L + M +     N++ ++AL+D   + G
Sbjct: 745  GMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEG 804

Query: 249  SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++  A  L  EM +      PN++TY S+I  FC +G + +A  + D M + GC P+ VT
Sbjct: 805  NLLEAKNLYKEMIRRS--VHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVT 862

Query: 309  ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
             +TLI GFC    +++  +L  ++   G V     Y++L+    +  +L  A+K+F++M+
Sbjct: 863  YNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV 922

Query: 369  ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRK 426
              GV PD +  ++++  LC  G++ +   + ED++K    + +D DI  +++++ G+CR 
Sbjct: 923  DCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQK----NQMDVDIITYNIIIQGMCRN 978

Query: 427  NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            +   EA  L R + +K + L       ++  L ++G
Sbjct: 979  DKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNG 1014



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 158/312 (50%), Gaps = 14/312 (4%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++   C + R+ ++A  ++  M +    P+ ++YN +I   C+ GD+  A EL+ 
Sbjct: 136 VTFGSLLHGFCLRNRI-HDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLN 194

Query: 189 GMGLID-LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
            M     L  D++TY +++ G C +G    A  + + M +     ++  ++AL+D   + 
Sbjct: 195 EMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQ 254

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G+++ A EL  +M +      PN VTY S+I   C  G +  A    D M + GC PN V
Sbjct: 255 GNLDEAQELYKQMLQSS--IGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVV 312

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T +TLI GFC    +++  +L  ++   G V     Y++L+    +  +L+ A+ +FS M
Sbjct: 313 TYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWM 372

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK----IGFLSSVDSDIHSVLLLGL 423
           ++ GV PD +   +++  LC+ G++      + D+      +G ++      +++++ GL
Sbjct: 373 VSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVA------YNIMIHGL 426

Query: 424 CRKNHSVEAAKL 435
           C+ +   EA +L
Sbjct: 427 CKADKVEEAWEL 438



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 173/366 (47%), Gaps = 18/366 (4%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI 106
           + ++ T  + L   C+   +H  F   + M         ++S Y  +  +YN   +    
Sbjct: 132 DPSIVTFGSLLHGFCLRNRIHDAFSLVASM---------VKSGYEPNVVVYNTLIDCLCK 182

Query: 107 KQNPSIIIDVVEAYKEEGCVVS--VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
             + +I ++++   +++G + +  V    ++  LC       +A  +LR M +  + PD 
Sbjct: 183 NGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEW-RQAARILRDMTKRRINPDV 241

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
             +  +I  F ++G++  A EL K M    + P+ +TY S+I G C  GRL  A   F +
Sbjct: 242 FTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDL 301

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--GDCSPNVVTYTSVIQIFC 282
           M   GC  N+V Y+ L++G C+   +E  ++L   M +EG  GD      TY ++I  +C
Sbjct: 302 MASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGD----TFTYNTLIHGYC 357

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G ++ A  I   M + G  P+ +T   L+ G CV G +  A    + + +G       
Sbjct: 358 QVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIV 417

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y+ ++  L +  +++EA +LF ++   GVKPD    ++MI  LC  G   E   L+  +
Sbjct: 418 AYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRM 477

Query: 403 EKIGFL 408
           ++ G +
Sbjct: 478 KEDGII 483



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 158/321 (49%), Gaps = 7/321 (2%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           R +    + +++V++      V   +++  I NL    R     ++  ++M  F +  D 
Sbjct: 45  RFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANL----RRYETVIYFSQQMELFGISHDL 100

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
             +  +I  FC    +  A  ++  M  +   P I+T+ S++ GFC   R+ DA  L   
Sbjct: 101 YSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVAS 160

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M + G   N+V Y+ L+D +C+ G +  ALELL EMEK+ G  + ++VTY +++   C  
Sbjct: 161 MVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKK-GRLAADLVTYNTLLTGLCYS 219

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G  ++A  IL  M      P+  T + LI  F  +GNLDEA +L  +++      +   Y
Sbjct: 220 GEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTY 279

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +SL+  L    RL  A+K F  M + G  P+ +  + +I   C   +V +G  L++ + +
Sbjct: 280 NSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYR 339

Query: 405 IGFLSSVDSDIHSVLLLGLCR 425
            G +   D+  ++ L+ G C+
Sbjct: 340 EGLVG--DTFTYNTLIHGYCQ 358



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 171/356 (48%), Gaps = 14/356 (3%)

Query: 96   MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
            + N  C+ +R ++  S++  + E   E   V+      VI  LC K R  N A+ +   M
Sbjct: 691  LLNGFCQGNRFQEAVSLVDSMAELGLEPNVVI---YNTVINGLC-KNRDLNNALEIFYGM 746

Query: 156  PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
             +  +  D + YN +I   C  G    A  L++ M    + P++I + ++I  F   G L
Sbjct: 747  EKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNL 806

Query: 216  EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
             +A  L+K M R     N++ Y++L++G C  G +  A  +   M  +G  C P+VVTY 
Sbjct: 807  LEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKG--CFPDVVTYN 864

Query: 276  SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            ++I  FC    +++ + +   M   G   +  T +TLI G+C  G L+ A ++ +++V  
Sbjct: 865  TLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDC 924

Query: 336  GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
            G       Y+ L+  L    ++++A  +   +  + +  D +  +++I+ +C   +V E 
Sbjct: 925  GVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEA 984

Query: 396  FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR------FMLKKRIW 445
            +CL+  + + G    +D+  +  ++ GLCR     EA KL        FM  +RI+
Sbjct: 985  WCLFRSLTRKGV--KLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIY 1038



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 131/280 (46%), Gaps = 21/280 (7%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           I +++   LFCE   M+ +  +          P I+ +  ++       + +    LF  
Sbjct: 594 IKFDDAFGLFCE---MLQSRPI----------PSIVDFTRVLTAIAKMNKFDIVIYLFHK 640

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+  G + +L +++ L+   CR      AL LLG+M K G    P++VT  S++  FC  
Sbjct: 641 MENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLG--FQPSIVTLGSLLNGFCQG 698

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
              +EA+ ++D M  LG  PN V  +T+I G C   +L+ A ++   +   G V+    Y
Sbjct: 699 NRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTY 758

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++L+  L  + R  +A +L   M+   + P+ +  + +I      G +LE   LY+++ +
Sbjct: 759 NTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIR 818

Query: 405 IGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
                SV  +I  ++ L+ G C +    +A  +   M+ K
Sbjct: 819 ----RSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSK 854



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 4/238 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ ++  +I  FC   R   A  L   M + G   ++V   +LL+G C+    + A+ L+
Sbjct: 649 DLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLV 708

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M + G    PNVV Y +VI   C    +  AL I   ME  G   + VT +TLI G C
Sbjct: 709 DSMAELG--LEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLC 766

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G   +A +L+  +V      +   +++L+   V+   L EA+ L+ +M+   V P+ L
Sbjct: 767 NSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNIL 826

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +I   C+ G++ +   +++ +   G    V +  ++ L+ G C+     +  KL
Sbjct: 827 TYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVT--YNTLITGFCKSKRVEDGMKL 882



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 38/237 (16%)

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF ++ R EDA  LF  M +     ++V ++ LL  I  L   E  +    +ME  G   
Sbjct: 39  GFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFG--I 96

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           S ++ ++T +I  FC    +  AL IL +M  LG  P+ VT  +L+ GFC+   + +A+ 
Sbjct: 97  SHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFS 156

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+                                   + M+ SG +P+ +  + +I  LC
Sbjct: 157 LV-----------------------------------ASMVKSGYEPNVVVYNTLIDCLC 181

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             G V     L  ++EK G L++ D   ++ LL GLC      +AA++ R M K+RI
Sbjct: 182 KNGDVNIALELLNEMEKKGRLAA-DLVTYNTLLTGLCYSGEWRQAARILRDMTKRRI 237



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 113/233 (48%), Gaps = 8/233 (3%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           + +DA GLF  M +     ++V ++ +L  I ++   +  + L  +ME  G   S ++ +
Sbjct: 595 KFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLG--ISHDLYS 652

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           +T +I  FC       AL +L +M  LG  P+ VT+ +L+ GFC      EA  L+D + 
Sbjct: 653 FTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMA 712

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G   +   Y++++  L + + L  A ++F  M   G+  D +  + +I  LC  G+  
Sbjct: 713 ELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWT 772

Query: 394 EGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +   L  D+ K      +D ++   + L+    ++ + +EA  L + M+++ +
Sbjct: 773 DAARLLRDMVK----RKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSV 821



 Score = 38.5 bits (88), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 68/237 (28%)

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P++V +T V+            + +  +ME LG + +  + + LI  FC           
Sbjct: 613 PSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFC----------- 661

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
                                   R  R   A  L  KM+  G +P  +    ++   C 
Sbjct: 662 ------------------------RCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQ 697

Query: 389 GGQVLEGFCLYEDIEKIGFLSSV---------------------------------DSDI 415
           G +  E   L + + ++G   +V                                 D+  
Sbjct: 698 GNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVT 757

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
           ++ L+ GLC      +AA+L R M+K++I     +   +++   K G+     NL K
Sbjct: 758 YNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYK 814


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 170/328 (51%), Gaps = 14/328 (4%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    V+  LC+  R+  +A  +  +M    L PD + YN ++  +C+ G +  A  +  
Sbjct: 226 VTFNTVVNGLCKAGRM-EDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFA 284

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD++T+ S+I   C AG LE A  L   M+  G   N   ++AL+DG CR G
Sbjct: 285 EMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNG 344

Query: 249 SMERALELLGEMEKEGGDC--SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            ++ AL  + EM     +C   P+VV Y  +I  +C  G M EA  ++  MEA G  P+ 
Sbjct: 345 FLDDALLAMKEMR----ECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDV 400

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT ST++ G+C  G+ D A++L  K++  G V     YSSL+  L   +RL +A +LF K
Sbjct: 401 VTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEK 460

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           ML  G++PD    + +I   C  G V +   L++++ K G L  V +  +SVL+ GL + 
Sbjct: 461 MLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVT--YSVLIDGLSKS 518

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKI 454
             + EA +L       +++ + P  D I
Sbjct: 519 ARTKEAQRLLF-----KLYYEDPVPDNI 541



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 158/327 (48%), Gaps = 18/327 (5%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  +C    L   A+ ++ +M E  LR +   +  +I  FC  G +  A   MK
Sbjct: 296 VTFTSLIHAMCRAGNL-ERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMK 354

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P ++ Y  +I G+C  GR+++A  L   M+  G   ++V YS +L G C++G
Sbjct: 355 EMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIG 414

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
             + A EL  +M K+G    P+ +TY+S+I+  C +  + +A  + ++M  LG  P+  T
Sbjct: 415 DTDSAFELNRKMLKKG--VVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFT 472

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI G C EGN+ +A  L D+++  G +     YS L+  L ++ R KEA++L  K+ 
Sbjct: 473 YTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLY 532

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS--------------VDSD 414
                PD +    ++   C   +      L +     G ++               +D  
Sbjct: 533 YEDPVPDNIKYEALM-HCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGS 591

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLK 441
           ++SVL+ G CR  + ++A    + +L+
Sbjct: 592 VYSVLIHGHCRGGNIMKALSFHKQLLR 618



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 139/282 (49%), Gaps = 6/282 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + YN V+ L      + +A  L+  M    + P++ TY  +++  C  G+ E+A G+
Sbjct: 118 PSLLAYNAVL-LALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGV 176

Query: 222 F-KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
               M+  GCA N+V Y+ L+   CR G ++ A  L+G M +EGG   P++VT+ +V+  
Sbjct: 177 VGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVM-REGG-VRPSLVTFNTVVNG 234

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G M++A  + D M   G  P+ V+ +TL+ G+C  G L EA  +  ++   G V  
Sbjct: 235 LCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPD 294

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++SL+  + R   L+ A  L  +M   G++ +    + +I   C  G + +     +
Sbjct: 295 VVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMK 354

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           ++ +     SV    ++VL+ G C+     EA +L   M  K
Sbjct: 355 EMRECRIQPSVVC--YNVLINGYCKLGRMDEARELIHEMEAK 394



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 128/298 (42%), Gaps = 56/298 (18%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           +Q S    + + N  C++ R+ +   +I ++    + +G    V     I +   K    
Sbjct: 361 IQPSVVCYNVLINGYCKLGRMDEARELIHEM----EAKGMKPDVVTYSTILSGYCKIGDT 416

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A  + RKM +  + PD I Y+++IR  CE+  +  A EL + M  + L PD  TY ++
Sbjct: 417 DSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTL 476

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C  G ++ A  L   M + G   ++V YS L+DG+ +    + A  LL ++  E  
Sbjct: 477 IDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYE-- 534

Query: 266 DCSPNVVTYTSVIQI---------------FCGKGMMKEA----LGILDR---------- 296
           D  P+ + Y +++                 F  KG+M +A      +LDR          
Sbjct: 535 DPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYS 594

Query: 297 ------------MEAL---------GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
                       M+AL         G +PN  +  +L++G   EG   EA  +I +++
Sbjct: 595 VLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELL 652


>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 596

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 209/409 (51%), Gaps = 11/409 (2%)

Query: 35  FYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSS 94
           F++ + K    ++++  T++A L       VL+RC      +G RFF+WA+ Q  YRHS 
Sbjct: 86  FHSRVPKLELALQESGVTMRAGLTE----RVLNRC-GDAGNLGYRFFVWASKQPGYRHSY 140

Query: 95  FMYNRACEM-SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
             Y    ++ S+++Q  ++   + E  K+   +++ ++  V+      ARL  +A+ VL 
Sbjct: 141 ENYKAMVKIFSKMRQFGAVWALLEEMRKDNSVLITSELFIVLIRRFASARLVEKAIEVLD 200

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +MP++   PD  ++  ++   C+ G +  A  L + M  +   P +  + S++ G+C  G
Sbjct: 201 EMPKYGCEPDEYVFGCLLDALCKNGSVKQAASLFEDMR-VRFSPSLRHFTSLLYGWCREG 259

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L +A  +   M+  G   ++V ++ LL      G M  A +LL EM ++G  C PN  +
Sbjct: 260 KLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAGKMTDAFDLLKEMVRKG--CEPNANS 317

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YT +IQ FC +  M EA+ +   ME  GC  + VT + LI GFC  G ++  YQ++D + 
Sbjct: 318 YTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYTALISGFCKWGKINRGYQILDAMK 377

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G + +   Y  +++   + + L+E  +L   M   G  PD    +V+IR  C  G+V 
Sbjct: 378 QKGHMPNQLTYLRILLAHEKKEELEECLELIESMRMVGCVPDLSIYNVVIRLACKLGEVK 437

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +G  ++ ++E   F   +D+ +  +++ G   +   VEA +  + M+ +
Sbjct: 438 QGVQIWNEMEASDFSPELDTFV--IMIHGFLGQGCLVEACEYFKEMIGR 484


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 211/431 (48%), Gaps = 19/431 (4%)

Query: 29  ASPAERFYTHLQKNPNNIEK-TLATVKAKLD--STCVIEVLHRCFPSQSQMGIRFFIWAA 85
           A   E+ Y  L+ + + + K  LA  ++ +D     +I VL RC      +G RFF+WA 
Sbjct: 64  AGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRC-GDAGNLGYRFFLWAT 122

Query: 86  LQSSYRHSSFMYNRACE-----MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140
            Q  Y HS       C+     +S+++Q  ++   + E  K    ++  ++  V+     
Sbjct: 123 KQPGYFHSY----EVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFA 178

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
            A +  +A+ VL +MP++ L PD  ++  ++   C+ G +  A ++ + M      P++ 
Sbjct: 179 SANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE-KFPPNLR 237

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            + S++ G+C  G+L +A  +   MK  G   ++V ++ LL G    G M  A +L+ +M
Sbjct: 238 YFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDM 297

Query: 261 EKEGGDCSPNVVTYTSVIQIFC-GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
            K G +  PNV  YT +IQ  C  +  M EA+ +   ME  GC  + VT + LI GFC  
Sbjct: 298 RKRGFE--PNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKW 355

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +D+ Y ++D +   G + S   Y  ++V   + ++ +E  +L  KM   G  PD L  
Sbjct: 356 GMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIY 415

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +V+IR  C  G+V E   L+ ++E  G    VD+ +  +++ G   +   +EA    + M
Sbjct: 416 NVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFV--IMINGFTSQGFLIEACNHFKEM 473

Query: 440 LKKRIWLQGPY 450
           + + I+    Y
Sbjct: 474 VSRGIFSAPQY 484



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 109/240 (45%), Gaps = 8/240 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+   I +  S++ D+    +++G + S      I    EK     E + ++ KM     
Sbjct: 353 CKWGMIDKGYSVLDDM----RKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGC 408

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD +IYN VIRL C+ G++  A  L   M    L P + T+V MI GF + G L +AC 
Sbjct: 409 HPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACN 468

Query: 221 LFKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
            FK M   G   A       +LL+ + R   +E A ++   +  +   C  NV  +T  I
Sbjct: 469 HFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWI 528

Query: 279 QIFCGKGMMKEALGI-LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
                KG +KEA    LD ME +   P   T + L+KG     N   A ++ +KVV   S
Sbjct: 529 HALYAKGHVKEACSYCLDMME-MDLMPQPNTYAKLMKGLNKLYNRTIAAEITEKVVKMAS 587


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 174/349 (49%), Gaps = 37/349 (10%)

Query: 121 KEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           +  GC+ +V     + +  C+  R+ +EA  +L+ M    ++P+ I YN +I   C +G 
Sbjct: 37  ERNGCLPNVVTYNTLIDAYCKMGRI-DEAFGLLKSMSSKGMQPNLISYNVIINGLCREGS 95

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           M  A E+++ MG     PD +TY +++ G+C  G    A  +   M R+G + ++V Y+A
Sbjct: 96  MKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTA 155

Query: 240 LLDGICRLGSMERALELLGEMEKEG---------------------------------GD 266
           L++ +C+  ++ RA+E   +M   G                                   
Sbjct: 156 LINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESG 215

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            SP+VVTY + I   C    M+EALG++  M   G AP+ V+ ST+I GFC +G LD A+
Sbjct: 216 FSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAF 275

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           Q+  ++V  G       YSSL+  L   +RL EA  L  +ML  G+ PD    + +I   
Sbjct: 276 QMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAY 335

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           C+ G + +   L++++   GFL   D+  +SVL+ GL ++  + EA +L
Sbjct: 336 CVEGDLNKALHLHDEMIHKGFLP--DAVTYSVLINGLNKQARTREAKRL 382



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 159/318 (50%), Gaps = 47/318 (14%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLI------DLYPDIITYVSMIKGFCNAGRL 215
           P+   YN +IR FC  G      EL KG+G           P+++TY ++I  +C  GR+
Sbjct: 8   PNVYTYNILIRGFCSVG------ELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRI 61

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG----------- 264
           ++A GL K M   G   NL++Y+ +++G+CR GSM+ A E+L EM  +G           
Sbjct: 62  DEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTL 121

Query: 265 --GDC--------------------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
             G C                    SP+VVTYT++I   C    +  A+   D+M   G 
Sbjct: 122 LNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGL 181

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN  T +TLI GF  +G L+EAY++++++   G   S   Y++ +      +R++EA  
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALG 241

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           +  +M+  G+ PD ++ S +I   C  G++   F + +++ + G   S D+  +S L+ G
Sbjct: 242 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGV--SPDAVTYSSLIQG 299

Query: 423 LCRKNHSVEAAKLARFML 440
           LC      EA  L++ ML
Sbjct: 300 LCEMRRLTEACDLSQEML 317



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 180/359 (50%), Gaps = 20/359 (5%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G   SV     + N   KAR  N AM    +M    LRP+   Y  +I  F  +G +  A
Sbjct: 145 GVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEA 204

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             ++  M      P ++TY + I G C   R+E+A G+ + M   G A ++V+YS ++ G
Sbjct: 205 YRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISG 264

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            CR G ++RA ++  EM ++G   SP+ VTY+S+IQ  C    + EA  +   M  +G  
Sbjct: 265 FCRKGELDRAFQMKQEMVEKG--VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLP 322

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+  T +TLI  +CVEG+L++A  L D+++  G +     YS L+  L +  R +EA++L
Sbjct: 323 PDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRL 382

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQ------VLEGFC---LYEDIEKIGFLSSVDSD 414
             K++     P  +    +I E C   +      +++GFC   L  + +++ F S V+ +
Sbjct: 383 LFKLIYEESVPSDVTYDTLI-ENCSNIEFKSVVALIKGFCMKGLMHEADRV-FESMVERN 440

Query: 415 ------IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG-DEEL 466
                 +++V++ G CR  +  +A  L + M+          V  +++ L K G +EE+
Sbjct: 441 HKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEM 499



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 133/246 (54%), Gaps = 4/246 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P++ TY  +I+GFC+ G L+   G F  M+R+GC  N+V Y+ L+D  C++G ++ A  L
Sbjct: 8   PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 67

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M  +G    PN+++Y  +I   C +G MKEA  IL+ M   G  P+ VT +TL+ G+
Sbjct: 68  LKSMSSKG--MQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGY 125

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C EGN  +A  +  ++V  G   S   Y++L+  + + + L  A + F +M   G++P+ 
Sbjct: 126 CKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNE 185

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
              + +I      G + E + +  ++ + GF  SV +  ++  + G C      EA  + 
Sbjct: 186 RTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVT--YNAFIHGHCVLERMEEALGVV 243

Query: 437 RFMLKK 442
           + M++K
Sbjct: 244 QEMVEK 249



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 110/217 (50%), Gaps = 4/217 (1%)

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M R   + N+  Y+ L+ G C +G +++ L   GEME+ G  C PNVVTY ++I  +C  
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNG--CLPNVVTYNTLIDAYCKM 58

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + EA G+L  M + G  PN ++ + +I G C EG++ EA+++++++   G       Y
Sbjct: 59  GRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTY 118

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++L+    +     +A  + ++M+ +GV P  +  + +I  +C    +      ++ +  
Sbjct: 119 NTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRI 178

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            G     +   ++ L+ G  R+    EA ++   M +
Sbjct: 179 RGLRP--NERTYTTLIDGFSRQGLLNEAYRILNEMTE 213



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 153/375 (40%), Gaps = 45/375 (12%)

Query: 38  HLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFF-----IWAALQSSYRH 92
           H +   N +  ++ T  A ++S C    L+R      QM IR        +  L   +  
Sbjct: 138 HAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR 197

Query: 93  SSFM---YNRACEMSRIKQNPSII------------------IDVVEAYKEEGCVVSV-K 130
              +   Y    EM+    +PS++                  + VV+   E+G    V  
Sbjct: 198 QGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVS 257

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
              +I   C K  L + A  + ++M E  + PD + Y+++I+  CE   +  A +L + M
Sbjct: 258 YSTIISGFCRKGEL-DRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM 316

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
             + L PD  TY ++I  +C  G L  A  L   M   G   + V YS L++G+ +    
Sbjct: 317 LDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQART 376

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQI---------------FCGKGMMKEALGILD 295
             A  LL ++  E  +  P+ VTY ++I+                FC KG+M EA  + +
Sbjct: 377 REAKRLLFKLIYE--ESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFE 434

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M      P     + +I G C  GNL +A+ L  +++  G V       +L+  L +  
Sbjct: 435 SMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 494

Query: 356 RLKEAEKLFSKMLAS 370
             +E  ++    L S
Sbjct: 495 MNEEMSEVIGDTLRS 509


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 171/329 (51%), Gaps = 5/329 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + +VE   E GC  +V     I     +AR  +EA   + +M      PD I Y  +I  
Sbjct: 129 VALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGG 188

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+  D+    EL+  +      PDI+TY ++I G C AGRL DA  +F+ M    CA  
Sbjct: 189 FCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPT 245

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            + Y++L+ G CR G M+ A+ LLG+M  +   C+P+VVTYT+++  FC  G + +A  +
Sbjct: 246 AITYNSLIGGYCRAGDMDEAIRLLGKMVDD--KCAPDVVTYTTLMSAFCKMGRLDDAYEL 303

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
             +M A   +P+ VT ++L+ G C EG +++A +L++++   G   +   Y+ +V    +
Sbjct: 304 FQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCK 363

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             ++++AE+L +   + G  P+ +  ++++   C  G+  +     + +   G       
Sbjct: 364 ANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSV 423

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +++++L  LCR   + +A +    M+++
Sbjct: 424 AMYAIILDALCRDGRTDDAVQFYEEMIQR 452



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 170/302 (56%), Gaps = 8/302 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+ +LC   R+ ++A  ++ +M    +  + I Y+ ++   C+   +  A  L++ M   
Sbjct: 80  VVQSLCLGDRV-DDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAER 138

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P ++TY S+I GFC A R+++A G  + M   GC  +++ Y+AL+ G C+   + R 
Sbjct: 139 GCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRG 198

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           LELLGE+ + G   +P++VTY++VI   C  G +++A+ I + M    CAP  +T ++LI
Sbjct: 199 LELLGEVTRRG--FTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLI 253

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C  G++DEA +L+ K+V          Y++L+    +  RL +A +LF +M+A+ + 
Sbjct: 254 GGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLS 313

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  + ++  LC  G++ +   L E+I + G   ++ +  ++ ++ G C+ N   +A 
Sbjct: 314 PDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYT--YNCVVDGYCKANQVRKAE 371

Query: 434 KL 435
           +L
Sbjct: 372 EL 373



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 156/305 (51%), Gaps = 8/305 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++    ++  LC+  RL +EA+ ++  M E    P  + YN++I  FC    +  A   M
Sbjct: 109 AITYSALVDGLCKCERL-DEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFM 167

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M     +PDIITY ++I GFC +  +     L   + R G   ++V YS ++DG+C+ 
Sbjct: 168 EQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKA 227

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +  A+++  EM      C+P  +TY S+I  +C  G M EA+ +L +M    CAP+ V
Sbjct: 228 GRLRDAVDIFEEMS-----CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVV 282

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T +TL+  FC  G LD+AY+L  ++VA         ++SLV  L    R+++A +L  ++
Sbjct: 283 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 342

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  P     + ++   C   QV +   L  D    GF+ +  +  +++L+ G CR  
Sbjct: 343 TRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVT--YNILVAGCCRAG 400

Query: 428 HSVEA 432
            + +A
Sbjct: 401 RTDQA 405



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 140/281 (49%), Gaps = 6/281 (2%)

Query: 115 DVVEAYKEEGCV-VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           D V+ ++E  C   ++    +I   C    + +EA+ +L KM +    PD + Y  ++  
Sbjct: 232 DAVDIFEEMSCAPTAITYNSLIGGYCRAGDM-DEAIRLLGKMVDDKCAPDVVTYTTLMSA 290

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+ G +  A EL + M    L PD++T+ S++ G C  GR+EDA  L + + R GC   
Sbjct: 291 FCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPT 350

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+ ++DG C+   + +A EL+ +    G    PN VTY  ++   C  G   +AL  
Sbjct: 351 IYTYNCVVDGYCKANQVRKAEELVADFRSRG--FVPNTVTYNILVAGCCRAGRTDQALQY 408

Query: 294 LDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
           LD++ + G  C  +    + ++   C +G  D+A Q  ++++  G V +   ++++V  L
Sbjct: 409 LDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFAL 468

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            +  + ++A +L  +M+  G  P    C  ++   C  G +
Sbjct: 469 CKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMI 509



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 152/311 (48%), Gaps = 9/311 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC   RL   A+ V R+M +    PD + Y  ++    +   +  A ++++ M   
Sbjct: 11  VIGGLCRAGRL-RHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSA 68

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  T   +++  C   R++DA  L + M   G AAN + YSAL+DG+C+   ++ A
Sbjct: 69  RHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEA 128

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + L+  M + G  C+P VVTY S+I  FC    + EA G +++M A GC P+ +T + LI
Sbjct: 129 VALVETMAERG--CAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALI 186

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC   ++    +L+ +V   G       YS+++  L +  RL++A  +F +M      
Sbjct: 187 GGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCA 243

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P  +  + +I   C  G + E   L   +  +    + D   ++ L+   C+     +A 
Sbjct: 244 PTAITYNSLIGGYCRAGDMDEAIRLLGKM--VDDKCAPDVVTYTTLMSAFCKMGRLDDAY 301

Query: 434 KLARFMLKKRI 444
           +L + M+  ++
Sbjct: 302 ELFQQMVANKL 312



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 5/239 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P  + +  +I G C AGRL  A G+++ M       + + Y+ L+ G+ +   +  A+++
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMN-DAHPPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EM        P+  T T V+Q  C    + +A  +++ M   G A N +T S L+ G 
Sbjct: 62  LQEMVSARH--VPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 119

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    LDEA  L++ +   G   +   Y+S++    R +R+ EA     +M+A G  PD 
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDI 179

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +  + +I   C    V  G  L  ++ + GF   + +  +S ++ GLC+     +A  +
Sbjct: 180 ITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVT--YSTVIDGLCKAGRLRDAVDI 236


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 172/348 (49%), Gaps = 35/348 (10%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +  GC+ +V     I +   K R   EA  +LR M    L P+ I YN VI   C +G M
Sbjct: 230 ERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQM 289

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
               E+++ M      PD +T+ ++I G+CN G    A  L   M ++G + N+V Y+ L
Sbjct: 290 KETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTL 349

Query: 241 LDGICRLGSMERALELLGEMEKEG---------------------------------GDC 267
           ++ +C+ G++ RA+E L +M   G                                    
Sbjct: 350 INSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +P ++TY ++I   C  G M++A G+L  M   G  P+ V+ ST+I GFC    L++A+Q
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ 469

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  ++VA G       YSSL+  L + +RL E   LF +ML+ G+ PD +  + +I   C
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           + G + +   L++++ + GF  S D   ++VL+ G  +++ + EA +L
Sbjct: 530 IEGDLDKALRLHDEMIQKGF--SPDIVTYNVLINGFNKQSRTKEAKRL 575



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 171/344 (49%), Gaps = 25/344 (7%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I ++C+   L N AM  L +M +  L P+   Y  +I  F ++G +  A ++MK
Sbjct: 344 VTYTTLINSMCKAGNL-NRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMK 402

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P IITY ++I G C  GR+EDA GL + M   G   ++V+YS ++ G CR  
Sbjct: 403 EMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQ 462

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E+A +L  EM  +G   SP+V TY+S+IQ  C +  + E   +   M +LG  P+ VT
Sbjct: 463 ELEKAFQLKVEMVAKG--ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVT 520

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            ++LI  +C+EG+LD+A +L D+++  G       Y+ L+    +  R KEA++L  K+L
Sbjct: 521 YTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
                P+ +  + +I                ++   + F S++       L+ G C K  
Sbjct: 581 YEESVPNEITYNTLI----------------DNCNNLEFKSAL------ALMKGFCMKGL 618

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
             EA ++   ML+K   L     + I+    K G+ E   NL K
Sbjct: 619 MNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYK 662



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 161/319 (50%), Gaps = 5/319 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR-LFCEKGDMIAA 183
           C  S  +  ++   C +  L N+A+ ++     +   P  + YN ++  +   K  +  A
Sbjct: 128 CKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIA 187

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           + + K M    + P++ TY  +I+GFC AG LE     F  M+R+GC  N+V Y+ ++D 
Sbjct: 188 EGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDA 247

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+L  +  A +LL  M  +G   +PN+++Y  VI   C +G MKE   IL+ M      
Sbjct: 248 YCKLRKIGEAFKLLRLMALKG--LNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV 305

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+RVT +TLI G+C  GN  +A  L  ++V  G   +   Y++L+  + +   L  A + 
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
             +M   G+ P+G   + +I      G + + + + +++ + GF  ++ +  ++ L+ G 
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIIT--YNALINGH 423

Query: 424 CRKNHSVEAAKLARFMLKK 442
           C      +A+ L + M+++
Sbjct: 424 CILGRMEDASGLLQEMIER 442



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 175/373 (46%), Gaps = 28/373 (7%)

Query: 38  HLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMY 97
           H +   N +   + T    ++S C    L+R      QM  R      L  + R  + + 
Sbjct: 331 HAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR-----GLHPNGRTYTTLI 385

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMP 156
           +   +   +KQ   I+ ++VE     G   ++     + N  C   R+  +A  +L++M 
Sbjct: 386 DGFSQQGFLKQAYQIMKEMVE----NGFTPTIITYNALINGHCILGRME-DASGLLQEMI 440

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           E    PD + Y+ +I  FC   ++  A +L   M    + PD+ TY S+I+G C   RL 
Sbjct: 441 ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLG 500

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           + C LF+ M   G   + V Y++L++  C  G +++AL L  EM ++G   SP++VTY  
Sbjct: 501 EVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKG--FSPDIVTYNV 558

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI---------------KGFCVEGN 321
           +I  F  +   KEA  +L ++      PN +T +TLI               KGFC++G 
Sbjct: 559 LINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGL 618

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           ++EA ++++ ++  G   +   Y+ ++    +   +++A  L+ +ML SG  P  +    
Sbjct: 619 MNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMA 678

Query: 382 MIRELCLGGQVLE 394
           + + L   G+ +E
Sbjct: 679 LAKSLYHEGKEVE 691



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 120/259 (46%), Gaps = 5/259 (1%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL-GSMERALELLGEMEKE 263
           ++K       +  A  +  + K +G    +++Y+A+LD + R   S++ A  +  EM + 
Sbjct: 138 VVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVES 197

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G   SPNV TY  +I+ FC  G ++  L     ME  GC PN VT +T+I  +C    + 
Sbjct: 198 G--VSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIG 255

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           EA++L+  +   G   +   Y+ ++  L R  ++KE  ++  +M      PD +  + +I
Sbjct: 256 EAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLI 315

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
              C  G   +   L+ ++ K G   +V +  ++ L+  +C+  +   A +    M  + 
Sbjct: 316 NGYCNVGNFHQALVLHAEMVKNGLSPNVVT--YTTLINSMCKAGNLNRAMEFLDQMRDRG 373

Query: 444 IWLQGPYVDKIVEHLKKSG 462
           +   G     +++   + G
Sbjct: 374 LHPNGRTYTTLIDGFSQQG 392


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 172/348 (49%), Gaps = 35/348 (10%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +  GC+ +V     I +   K R   EA  +LR M    L P+ I YN VI   C +G M
Sbjct: 230 ERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQM 289

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
               E+++ M      PD +T+ ++I G+CN G    A  L   M ++G + N+V Y+ L
Sbjct: 290 KETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTL 349

Query: 241 LDGICRLGSMERALELLGEMEKEG---------------------------------GDC 267
           ++ +C+ G++ RA+E L +M   G                                    
Sbjct: 350 INSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +P ++TY ++I   C  G M++A G+L  M   G  P+ V+ ST+I GFC    L++A+Q
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ 469

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  ++VA G       YSSL+  L + +RL E   LF +ML+ G+ PD +  + +I   C
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           + G + +   L++++ + GF  S D   ++VL+ G  +++ + EA +L
Sbjct: 530 IEGDLDKALRLHDEMIQKGF--SPDIVTYNVLINGFNKQSRTKEAKRL 575



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 171/344 (49%), Gaps = 25/344 (7%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I ++C+   L N AM  L +M +  L P+   Y  +I  F ++G +  A ++MK
Sbjct: 344 VTYTTLINSMCKAGNL-NRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMK 402

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P IITY ++I G C  GR+EDA GL + M   G   ++V+YS ++ G CR  
Sbjct: 403 EMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQ 462

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E+A +L  EM  +G   SP+V TY+S+IQ  C +  + E   +   M +LG  P+ VT
Sbjct: 463 ELEKAFQLKVEMVAKG--ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVT 520

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            ++LI  +C+EG+LD+A +L D+++  G       Y+ L+    +  R KEA++L  K+L
Sbjct: 521 YTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
                P+ +  + +I                ++   + F S++       L+ G C K  
Sbjct: 581 YEESVPNEITYNTLI----------------DNCNNLEFKSAL------ALMKGFCMKGL 618

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
             EA ++   ML+K   L     + I+    K G+ E   NL K
Sbjct: 619 MNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYK 662



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 161/319 (50%), Gaps = 5/319 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR-LFCEKGDMIAA 183
           C  S  +  ++   C +  L N+A+ ++     +   P  + YN ++  +   K  +  A
Sbjct: 128 CKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIA 187

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           + + K M    + P++ TY  +I+GFC AG LE     F  M+R+GC  N+V Y+ ++D 
Sbjct: 188 EGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDA 247

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+L  +  A +LL  M  +G   +PN+++Y  VI   C +G MKE   IL+ M      
Sbjct: 248 YCKLRKIGEAFKLLRLMALKG--LNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV 305

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+RVT +TLI G+C  GN  +A  L  ++V  G   +   Y++L+  + +   L  A + 
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
             +M   G+ P+G   + +I      G + + + + +++ + GF  ++ +  ++ L+ G 
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIIT--YNALINGH 423

Query: 424 CRKNHSVEAAKLARFMLKK 442
           C      +A+ L + M+++
Sbjct: 424 CILGRMEDASGLLQEMIER 442



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 175/373 (46%), Gaps = 28/373 (7%)

Query: 38  HLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMY 97
           H +   N +   + T    ++S C    L+R      QM  R      L  + R  + + 
Sbjct: 331 HAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR-----GLHPNGRTYTTLI 385

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMP 156
           +   +   +KQ   I+ ++VE     G   ++     + N  C   R+  +A  +L++M 
Sbjct: 386 DGFSQQGFLKQAYQIMKEMVE----NGFTPTIITYNALINGHCILGRME-DASGLLQEMI 440

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           E    PD + Y+ +I  FC   ++  A +L   M    + PD+ TY S+I+G C   RL 
Sbjct: 441 ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLG 500

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           + C LF+ M   G   + V Y++L++  C  G +++AL L  EM ++G   SP++VTY  
Sbjct: 501 EVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKG--FSPDIVTYNV 558

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI---------------KGFCVEGN 321
           +I  F  +   KEA  +L ++      PN +T +TLI               KGFC++G 
Sbjct: 559 LINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGL 618

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           ++EA ++++ ++  G   +   Y+ ++    +   +++A  L+ +ML SG  P  +    
Sbjct: 619 MNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMA 678

Query: 382 MIRELCLGGQVLE 394
           + + L   G+ +E
Sbjct: 679 LAKSLYHEGKEVE 691



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 120/259 (46%), Gaps = 5/259 (1%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL-GSMERALELLGEMEKE 263
           ++K       +  A  +  + K +G    +++Y+A+LD + R   S++ A  +  EM + 
Sbjct: 138 VVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVES 197

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G   SPNV TY  +I+ FC  G ++  L     ME  GC PN VT +T+I  +C    + 
Sbjct: 198 G--VSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIG 255

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           EA++L+  +   G   +   Y+ ++  L R  ++KE  ++  +M      PD +  + +I
Sbjct: 256 EAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLI 315

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
              C  G   +   L+ ++ K G   +V +  ++ L+  +C+  +   A +    M  + 
Sbjct: 316 NGYCNVGNFHQALVLHAEMVKNGLSPNVVT--YTTLINSMCKAGNLNRAMEFLDQMRDRG 373

Query: 444 IWLQGPYVDKIVEHLKKSG 462
           +   G     +++   + G
Sbjct: 374 LHPNGRTYTTLIDGFSQQG 392


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 197/382 (51%), Gaps = 22/382 (5%)

Query: 78  IRFFIWAALQSSYRHSSFM-YNRACE----MSRIKQNPSII-------IDVVEA-YKE-- 122
           +   +WA +++     +   ++RA +    +S +  NP ++       I VVE+ YKE  
Sbjct: 162 VDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMI 221

Query: 123 -EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
                V+V    V+ N LC+  +   +A  V+  M  +   P  I YN +I  +C+ G M
Sbjct: 222 RRRIGVNVVTFDVVINGLCKVGKFQ-KAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKM 280

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             AD L+K M    ++P+ IT+  +I GFC    +  A  +F+ M+R G   N+V Y++L
Sbjct: 281 FKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSL 340

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++G+C  G ++ AL L  +M   G    PNVVTY ++I  FC K M+KEA  +LD +   
Sbjct: 341 INGLCSNGKLDEALGLQDKMSGMG--LKPNVVTYNALINGFCKKKMLKEAREMLDDIGKR 398

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G APN +T +TLI  +   G +D+A+ L   ++  G   +   Y+ L+V   R   +KEA
Sbjct: 399 GLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEA 458

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            KL  +M  +G+K D +  ++++  LC  G+  +   L +++ ++G   S     ++ L+
Sbjct: 459 RKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPS--HLTYNALI 516

Query: 421 LGLCRKNHSVEAAKLARFMLKK 442
            G  R+ +S  A  +   M KK
Sbjct: 517 DGYFREGNSTAALNVRTLMEKK 538



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 158/312 (50%), Gaps = 20/312 (6%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTII 166
           +N +    V E  + +G   +V     + N LC   +L +EA+ +  KM    L+P+ + 
Sbjct: 313 ENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL-DEALGLQDKMSGMGLKPNVVT 371

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +I  FC+K  +  A E++  +G   L P++IT+ ++I  +  AGR++DA  L  +M 
Sbjct: 372 YNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMML 431

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G   N+  Y+ L+ G CR G+++ A +L  EME  G     ++VTY  ++   C KG 
Sbjct: 432 DTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEME--GNGLKADLVTYNILVDALCKKGE 489

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
            ++A+ +LD M  +G  P+ +T + LI G+  EGN   A  +   +   G  ++   Y+ 
Sbjct: 490 TRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNV 549

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+       +L+EA +L ++ML  G+ P+     ++  E+               +EK G
Sbjct: 550 LIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEM---------------MEK-G 593

Query: 407 FLSSVDSDIHSV 418
           F+  +D  +++V
Sbjct: 594 FIPDIDGHLYNV 605


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 212/431 (49%), Gaps = 19/431 (4%)

Query: 29  ASPAERFYTHLQKNPNNIEK-TLATVKAKLD--STCVIEVLHRCFPSQSQMGIRFFIWAA 85
           A   E+ Y  L+ + + + K  LA  ++ +D     +I VL RC  +   +G RFF+WA 
Sbjct: 64  AGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDA-GNLGYRFFLWAT 122

Query: 86  LQSSYRHSSFMYNRACE-----MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140
            Q  Y HS       C+     +S+++Q  ++   + E  K    ++  ++  V+     
Sbjct: 123 KQPGYFHSY----EVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFA 178

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
            A +  +A+ VL +MP++ L PD  ++  ++   C+ G +  A ++ + M      P++ 
Sbjct: 179 SANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE-KFPPNLR 237

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            + S++ G+C  G+L +A  +   MK  G   ++V ++ LL G    G M  A +L+ +M
Sbjct: 238 YFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDM 297

Query: 261 EKEGGDCSPNVVTYTSVIQIFC-GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
            K G +  PNV  YT +IQ  C  +  M EA+ +   ME  GC  + VT + LI GFC  
Sbjct: 298 RKRGFE--PNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKW 355

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +D+ Y ++D +   G + S   Y  ++V   + ++ +E  +L  KM   G  PD L  
Sbjct: 356 GMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIY 415

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +V+IR  C  G+V E   L+ ++E  G    VD+ +  +++ G   +   +EA    + M
Sbjct: 416 NVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFV--IMINGFTSQGFLIEACNHFKEM 473

Query: 440 LKKRIWLQGPY 450
           + + I+    Y
Sbjct: 474 VSRGIFSAPQY 484



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 109/240 (45%), Gaps = 8/240 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+   I +  S++ D+    +++G + S      I    EK     E + ++ KM     
Sbjct: 353 CKWGMIDKGYSVLDDM----RKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGC 408

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD +IYN VIRL C+ G++  A  L   M    L P + T+V MI GF + G L +AC 
Sbjct: 409 HPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACN 468

Query: 221 LFKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
            FK M   G   A       +LL+ + R   +E A ++   +  +   C  NV  +T  I
Sbjct: 469 HFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWI 528

Query: 279 QIFCGKGMMKEALGI-LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
                KG +KEA    LD ME +   P   T + L+KG     N   A ++ +KVV   S
Sbjct: 529 HALYAKGHVKEACSYCLDMME-MDLMPQPNTYAKLMKGLNKLYNRTIAAEITEKVVKMAS 587


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 179/342 (52%), Gaps = 19/342 (5%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           +    +I  LC+    A +A+ +   M     +PD   Y  +I   C+ G+  AA  L+K
Sbjct: 162 ITFTTLINGLCKAGEFA-QALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIK 220

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            MG +   PD++TY ++I   C    + +A  +F  MK  G +  +V+Y++L+ G+C   
Sbjct: 221 KMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFS 280

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
             + A  +L EM     +  P++VT++ +I IFC +G + EA G+L  M  +G  PN +T
Sbjct: 281 RWKEASAMLNEMTSL--NIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVIT 338

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            ++L+ G+ ++  + EA +L D ++  G       YS L+      KR+ EA++LF++M+
Sbjct: 339 YNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMI 398

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G+ P+ ++ + +I   C  G++ E   L++D+   G+L   D   +SVLL G C++ +
Sbjct: 399 HQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLP--DLCTYSVLLEGFCKQGY 456

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDK-------IVEHLKKSGD 463
             +A +L R M       QG Y+         +++ + KSG+
Sbjct: 457 LGKAFRLFRAM-------QGTYLKPNLVMYTILIDSMCKSGN 491



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 158/294 (53%), Gaps = 4/294 (1%)

Query: 114 IDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +D+    K +G   +V     +I  LC  +R   EA  +L +M   ++ PD + ++ +I 
Sbjct: 251 LDIFSYMKAKGISPTVVSYTSLIQGLCSFSRW-KEASAMLNEMTSLNIMPDIVTFSLLID 309

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
           +FC++G+++ A  ++K M  + + P++ITY S++ G+     + +A  LF VM   GC  
Sbjct: 310 IFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKP 369

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++ +YS L++G C +  ++ A +L  EM  +G   +PN V+YT++I  FC  G ++EA  
Sbjct: 370 DVFSYSILINGYCMVKRIDEAKQLFNEMIHQG--LTPNTVSYTTLIHAFCQLGKLREARE 427

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M   G  P+  T S L++GFC +G L +A++L   +       +   Y+ L+  + 
Sbjct: 428 LFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMC 487

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++  L  A KLFS++   G++PD    + +I  LC  G + E    +  +E+ G
Sbjct: 488 KSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDG 541



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 152/324 (46%), Gaps = 4/324 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++   E GC   V     + +   K RL NEA+ +   M    + P  + Y ++I+  C
Sbjct: 218 LIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLC 277

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
                  A  ++  M  +++ PDI+T+  +I  FC  G + +A G+ K M   G   N++
Sbjct: 278 SFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVI 337

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y++L+ G      +  A +L   M   G  C P+V +Y+ +I  +C    + EA  + +
Sbjct: 338 TYNSLMHGYSLQMEVVEARKLFDVMITRG--CKPDVFSYSILINGYCMVKRIDEAKQLFN 395

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   G  PN V+ +TLI  FC  G L EA +L   +   G +     YS L+    +  
Sbjct: 396 EMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQG 455

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            L +A +LF  M  + +KP+ +  +++I  +C  G +     L+ ++   G     D  I
Sbjct: 456 YLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGL--QPDVQI 513

Query: 416 HSVLLLGLCRKNHSVEAAKLARFM 439
           ++ ++ GLC++    EA +  R M
Sbjct: 514 YTTIINGLCKEGLLDEALEAFRKM 537



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 120/238 (50%), Gaps = 8/238 (3%)

Query: 111 SIIIDVVEAYK------EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           S+ ++VVEA K        GC   V    ++ N     +  +EA  +  +M    L P+T
Sbjct: 347 SLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNT 406

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + Y  +I  FC+ G +  A EL K M      PD+ TY  +++GFC  G L  A  LF+ 
Sbjct: 407 VSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRA 466

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+      NLV Y+ L+D +C+ G++  A +L  E+   G    P+V  YT++I   C +
Sbjct: 467 MQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHG--LQPDVQIYTTIINGLCKE 524

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
           G++ EAL    +ME  GC PN  + + +I+GF    +   A QLI ++   G V+  G
Sbjct: 525 GLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADEG 582



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 143/284 (50%), Gaps = 6/284 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C  SR K+  S +++ + +      +V+  ++  IF  C++  +  EA  VL+ M E  +
Sbjct: 277 CSFSRWKE-ASAMLNEMTSLNIMPDIVTFSLLIDIF--CKEGNVL-EAQGVLKTMTEMGV 332

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ I YN+++  +  + +++ A +L   M      PD+ +Y  +I G+C   R+++A  
Sbjct: 333 EPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQ 392

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M   G   N V+Y+ L+   C+LG +  A EL  +M   G    P++ TY+ +++ 
Sbjct: 393 LFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNG--YLPDLCTYSVLLEG 450

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +G + +A  +   M+     PN V  + LI   C  GNL+ A +L  ++   G    
Sbjct: 451 FCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPD 510

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
              Y++++  L +   L EA + F KM   G  P+  + +V+IR
Sbjct: 511 VQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIR 554



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 130/261 (49%), Gaps = 4/261 (1%)

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
           A   L K M L  L P+  T   +I  FC    ++    +   + + G    ++ ++ L+
Sbjct: 109 AVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLI 168

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G+C+ G   +ALEL  +M   G  C P+V TYT++I   C  G    A G++ +M  +G
Sbjct: 169 NGLCKAGEFAQALELFDDMVARG--CQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVG 226

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C P+ VT STLI   C +  ++EA  +   + A G   +   Y+SL+  L    R KEA 
Sbjct: 227 CQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEAS 286

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
            + ++M +  + PD +  S++I   C  G VLE   + + + ++G   +V +  ++ L+ 
Sbjct: 287 AMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVIT--YNSLMH 344

Query: 422 GLCRKNHSVEAAKLARFMLKK 442
           G   +   VEA KL   M+ +
Sbjct: 345 GYSLQMEVVEARKLFDVMITR 365



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 138/306 (45%), Gaps = 23/306 (7%)

Query: 88  SSYRHSSFMYNRACEMSRIKQNP-----SIIIDVV----EAYKEEGCVVSVKMMKVIFNL 138
           S ++ +S M N   EM+ +   P     S++ID+        + +G + ++  M V  N+
Sbjct: 280 SRWKEASAMLN---EMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNV 336

Query: 139 CEKARLANE---AMWVLRKMPEFDL------RPDTIIYNNVIRLFCEKGDMIAADELMKG 189
                L +     M V+     FD+      +PD   Y+ +I  +C    +  A +L   
Sbjct: 337 ITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNE 396

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M    L P+ ++Y ++I  FC  G+L +A  LFK M  +G   +L  YS LL+G C+ G 
Sbjct: 397 MIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGY 456

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           + +A  L   M+  G    PN+V YT +I   C  G +  A  +   +   G  P+    
Sbjct: 457 LGKAFRLFRAMQ--GTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIY 514

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           +T+I G C EG LDEA +   K+   G   +   Y+ ++   ++ K    A +L  +M  
Sbjct: 515 TTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRD 574

Query: 370 SGVKPD 375
            G   D
Sbjct: 575 KGFVAD 580



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA-LELLGEMEKEGGDCSPNVVT 273
           ++DA   F  M        ++ ++ LL  I R+     A + L  +ME  G   SPN  T
Sbjct: 71  IDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAG--LSPNTCT 128

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
              +I  FC    +     +L ++  LG  P  +T +TLI G C  G   +A +L D +V
Sbjct: 129 LNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMV 188

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           A G       Y++++  L +      A  L  KM   G +PD +  S +I  LC    V 
Sbjct: 189 ARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVN 248

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           E   ++  ++  G   +V S  ++ L+ GLC  +   EA+ +
Sbjct: 249 EALDIFSYMKAKGISPTVVS--YTSLIQGLCSFSRWKEASAM 288


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 166/311 (53%), Gaps = 5/311 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+  +   +A+ +   M     +PD   Y  +I   C+ G+ +AA  L +
Sbjct: 193 VTFNTLINGLCKVGKFG-QAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFR 251

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            MG     PD++TY ++I   C   R+ +A  +F  MK  G + N+  Y++L+ G+C   
Sbjct: 252 KMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFS 311

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A  +L EM     +  PN+VT++ +I IFC +G + EA G+L  M  +G  PN VT
Sbjct: 312 RWREASAMLNEMMSL--NIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVT 369

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S+L+ G+ ++  + EA +L D ++  G       Y+ L+    + KR+ EA++LF++M+
Sbjct: 370 YSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMI 429

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G+ PD ++ + +I  LC  G++ E   L++++   G L   D   +S+LL G C++ +
Sbjct: 430 HQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLP--DLCTYSILLDGFCKQGY 487

Query: 429 SVEAAKLARFM 439
             +A +L R M
Sbjct: 488 LAKAFRLFRAM 498



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 180/382 (47%), Gaps = 15/382 (3%)

Query: 60  TCVIEVLHRCFPSQSQMGIRFFIWA-----ALQSSYRHSSFMYNRACEMSRIKQNPSIII 114
           T  + +L  CF    ++ + F + A      LQ +    + + N  C++ +  Q   +  
Sbjct: 157 TYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFD 216

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           D+V      G    V     I N LC+       A  + RKM E   +PD + Y+ +I  
Sbjct: 217 DMVA----RGYQPDVHTYTTIINGLCKIGETV-AAAGLFRKMGEAGCQPDVVTYSTIIDS 271

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C+   +  A ++   M    + P+I TY S+I+G CN  R  +A  +   M       N
Sbjct: 272 LCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPN 331

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V +S L++  C+ G++  A  +L  M + G    PNVVTY+S++  +  +  + EA  +
Sbjct: 332 IVTFSLLINIFCKEGNVFEARGVLKTMTEMG--VEPNVVTYSSLMNGYSLQAEVVEARKL 389

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
            D M   GC P+  + + LI G+C    + EA QL ++++  G       Y++L+  L +
Sbjct: 390 FDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQ 449

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             RL+EA  LF  ML +G  PD    S+++   C  G + + F L+  ++      ++  
Sbjct: 450 LGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNM-- 507

Query: 414 DIHSVLLLGLCRKNHSVEAAKL 435
            ++++L+  +C+  +  EA KL
Sbjct: 508 VMYNILIDAMCKSRNLKEARKL 529



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 154/318 (48%), Gaps = 4/318 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E GC   V     I +   K R  NEA+ +   M    + P+   YN++I+  C      
Sbjct: 255 EAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWR 314

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  ++  M  +++ P+I+T+  +I  FC  G + +A G+ K M   G   N+V YS+L+
Sbjct: 315 EASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLM 374

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G      +  A +L   M  +G  C P+V +Y  +I  +C    + EA  + + M   G
Sbjct: 375 NGYSLQAEVVEARKLFDVMITKG--CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG 432

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+ V+ +TLI G C  G L EA+ L   ++  G++     YS L+    +   L +A 
Sbjct: 433 LTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAF 492

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +LF  M ++ +KP+ +  +++I  +C    + E   L+ ++   G   +V   I++ ++ 
Sbjct: 493 RLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNV--QIYTTIIN 550

Query: 422 GLCRKNHSVEAAKLARFM 439
           GLC++    EA +  R M
Sbjct: 551 GLCKEGLLDEALEAFRNM 568



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 157/321 (48%), Gaps = 10/321 (3%)

Query: 95  FMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150
           F YN      C  SR ++  S +++ + +      +V+  ++  IF  C++  +  EA  
Sbjct: 298 FTYNSLIQGLCNFSRWRE-ASAMLNEMMSLNIMPNIVTFSLLINIF--CKEGNVF-EARG 353

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           VL+ M E  + P+ + Y++++  +  + +++ A +L   M      PD+ +Y  +I G+C
Sbjct: 354 VLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYC 413

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
            A R+ +A  LF  M   G   ++V+Y+ L+DG+C+LG +  A +L   M   G    P+
Sbjct: 414 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN--LPD 471

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY+ ++  FC +G + +A  +   M++    PN V  + LI   C   NL EA +L  
Sbjct: 472 LCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFS 531

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G   +   Y++++  L +   L EA + F  M   G  P+  + +V+IR      
Sbjct: 532 ELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHK 591

Query: 391 QVLEGFCLYEDIEKIGFLSSV 411
                  L  ++ + GF++ V
Sbjct: 592 DESRAVQLIGEMREKGFVADV 612



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 5/231 (2%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA-LELLGEMEKEGGDCSPNVVT 273
           ++DA   F  M        ++ ++ LL  I ++     A + L  +ME  G   SP+  T
Sbjct: 102 IDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAG--LSPDTYT 159

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
              +I  F     +     +L ++  LG     VT +TLI G C  G   +A +L D +V
Sbjct: 160 LHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMV 219

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           A G       Y++++  L +      A  LF KM  +G +PD +  S +I  LC   +V 
Sbjct: 220 ARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVN 279

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           E   ++  ++  G   ++ +  ++ L+ GLC  +   EA+ +   M+   I
Sbjct: 280 EALDIFSYMKAKGISPNIFT--YNSLIQGLCNFSRWREASAMLNEMMSLNI 328



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 9/154 (5%)

Query: 53  VKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSY-RHSSFMYN----RACEMSRIK 107
               L   C   +L   F  Q  +   F ++ A+QS+Y + +  MYN      C+   +K
Sbjct: 465 TNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLK 524

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           +   +  ++      +G   +V++   I N   K  L +EA+   R M E    P+   Y
Sbjct: 525 EARKLFSELFV----QGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSY 580

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           N +IR F +  D   A +L+  M       D+ T
Sbjct: 581 NVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 154/279 (55%), Gaps = 4/279 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD   Y  +I   C+ G+ +AA  L K MG     PD++TY ++I   C   R+ +A  
Sbjct: 7   QPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALD 66

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +F  MK  G + N+  Y++L+ G+C       A  +L EM     +  PN+VT++ +I I
Sbjct: 67  IFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSL--NIMPNIVTFSLLINI 124

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +G + EA G+L  M  +G  PN VT S+L+ G+ ++  + EA +L D ++  G    
Sbjct: 125 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPD 184

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ L+    + KR+ EA++LF++M+  G+ PD ++ + +I  LC  G++ E   L++
Sbjct: 185 VFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFK 244

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           ++   G L   D   +S+LL G C++ +  +A +L R M
Sbjct: 245 NMLTNGNLP--DLCTYSILLDGFCKQGYLAKAFRLFRAM 281



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 145/263 (55%), Gaps = 4/263 (1%)

Query: 114 IDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +D+    K +G   ++     +I  LC  +R   EA  +L +M   ++ P+ + ++ +I 
Sbjct: 65  LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRW-REASAMLNEMMSLNIMPNIVTFSLLIN 123

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
           +FC++G++  A  ++K M  + + P+++TY S++ G+     + +A  LF VM   GC  
Sbjct: 124 IFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKP 183

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++ +Y+ L++G C+   +  A +L  EM  +G   +P++V+Y ++I   C  G ++EA  
Sbjct: 184 DVFSYNILINGYCKAKRIGEAKQLFNEMIHQG--LTPDIVSYNTLIDGLCQLGRLREAHD 241

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M   G  P+  T S L+ GFC +G L +A++L   + +     +   Y+ L+  + 
Sbjct: 242 LFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMC 301

Query: 353 RTKRLKEAEKLFSKMLASGVKPD 375
           +++ LKEA KLFS++   G++P+
Sbjct: 302 KSRNLKEARKLFSELFVQGLQPN 324



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 2/281 (0%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E GC   V     I +   K R  NEA+ +   M    + P+   YN++I+  C      
Sbjct: 38  EAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWR 97

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  ++  M  +++ P+I+T+  +I  FC  G + +A G+ K M   G   N+V YS+L+
Sbjct: 98  EASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLM 157

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G      +  A +L   M  +G  C P+V +Y  +I  +C    + EA  + + M   G
Sbjct: 158 NGYSLQAEVFEARKLFDVMITKG--CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG 215

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+ V+ +TLI G C  G L EA+ L   ++  G++     YS L+    +   L +A 
Sbjct: 216 LTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAF 275

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           +LF  M ++ +KP+ +  +++I  +C    + E   L+ ++
Sbjct: 276 RLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSEL 316



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 124/246 (50%), Gaps = 10/246 (4%)

Query: 95  FMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150
           F YN      C  SR ++  S +++ + +      +V+  ++  IF  C++  +  EA  
Sbjct: 81  FTYNSLIQGLCNFSRWRE-ASAMLNEMMSLNIMPNIVTFSLLINIF--CKEGNVF-EARG 136

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           VL+ M E  + P+ + Y++++  +  + ++  A +L   M      PD+ +Y  +I G+C
Sbjct: 137 VLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYC 196

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
            A R+ +A  LF  M   G   ++V+Y+ L+DG+C+LG +  A +L   M   G    P+
Sbjct: 197 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN--LPD 254

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY+ ++  FC +G + +A  +   M++    PN V  + LI   C   NL EA +L  
Sbjct: 255 LCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFS 314

Query: 331 KVVAGG 336
           ++   G
Sbjct: 315 ELFVQG 320



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 1/101 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  RL  EA  + + M      PD   Y+ ++  FC++G +  A  L + M   
Sbjct: 226 LIDGLCQLGRL-REAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQST 284

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            L P+++ Y  +I   C +  L++A  LF  +   G   N+
Sbjct: 285 YLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNM 325


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 224/455 (49%), Gaps = 19/455 (4%)

Query: 3   RFSLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCV 62
           +F L R+   S+N  +      H   AS  E+ Y  L+K  + + K    ++   +S  V
Sbjct: 66  QFGLIRLQEISINHTDDHT---HDEFASDVEKVYRILRKYHSRVPKLELALR---ESGVV 119

Query: 63  IE------VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQNPSIIID 115
           +       VL RC  +   +  RF+ WA+ QS +R     Y    + +SR++Q  ++   
Sbjct: 120 VRPGLTERVLSRCGDA-GNLAYRFYSWASKQSGHRLDHDAYKAMIKVLSRMRQFGAVWAL 178

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  +E   +++ ++  ++      AR+ ++A+ VL +MP++   PD  ++  ++   C
Sbjct: 179 IEEMRQENPHLITPQVFVILMRRFASARMVHKAVEVLDEMPKYGCEPDEYVFGCLLDALC 238

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A  L + M      P +  + S++ G+C  G+L +A  +   MK  G   ++V
Sbjct: 239 KNGSVKEAASLFEDM-RYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDMGIEPDIV 297

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ LL G  + G M  A +LL EM ++   C PN  +YT +IQ  C    ++EA  +  
Sbjct: 298 VYNNLLGGYAQAGKMGDAYDLLKEMRRK--RCEPNATSYTVLIQSLCKHERLEEATRLFV 355

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+  GC  + VT STLI GFC  G +   Y+L+D+++  G   +   Y  +++   + +
Sbjct: 356 EMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMLAHEKKE 415

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            L+E ++L ++M   G  PD    + +IR  C  G+V EG  L+ ++E  G    +D+ +
Sbjct: 416 ELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLSPGMDTFV 475

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
             +++ G   +   VEA +  + M+ + ++    Y
Sbjct: 476 --IMINGFLEQGCLVEACEYFKEMVGRGLFTAPQY 508



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 75/173 (43%), Gaps = 3/173 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD  IYN VIRL C+ G++    +L   M    L P + T+V MI GF   G L +AC  
Sbjct: 434 PDLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLSPGMDTFVIMINGFLEQGCLVEACEY 493

Query: 222 FKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           FK M   G   A        L++ + R   +E A +    +    G C  NV  +T  I 
Sbjct: 494 FKEMVGRGLFTAPQYGTLKELMNSLLRAEKLEMAKDAWNCITASKG-CQLNVSAWTIWIH 552

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
               KG +KEA      M      PN  T + L+ G     N   A ++ +KV
Sbjct: 553 ALFSKGHVKEACSFCIDMMDKDLMPNPDTFAKLMHGLKKLYNRQFAAEITEKV 605


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 155/287 (54%), Gaps = 8/287 (2%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L+PD  IYNN+I L C+ G+++ A++L++GM    ++PD + Y ++I GFC  G +  AC
Sbjct: 308 LKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAAC 367

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF  M+R     ++V Y++++ GIC+ G M  A E+  EM  +G    P+ VTYT++I 
Sbjct: 368 KLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKG--LEPDEVTYTALID 425

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +C  G MKEA  + ++M   G  PN VT + L  G C  G +D A +L+ ++   G   
Sbjct: 426 GYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQP 485

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+++V  L +   +++  KL  +M  +G  PD +  + ++   C  G++ +     
Sbjct: 486 NVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKA---- 541

Query: 400 EDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            ++ +I     +   +   +VL+ G C      +  +L  +ML+K I
Sbjct: 542 HELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGI 588



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 168/344 (48%), Gaps = 39/344 (11%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + Y +VI   C+ G M+ A E+   M +  L PD +TY ++I G+C AG +++A  +
Sbjct: 380 PDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSV 439

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M + G   N+V Y+AL DG+C+ G ++ A ELL EM ++G    PNV TY +++   
Sbjct: 440 HNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKG--LQPNVYTYNTIVNGL 497

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTL----------------------------- 312
           C  G +++ + +++ M+  G  P+ +T +TL                             
Sbjct: 498 CKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTL 557

Query: 313 ------IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
                 + GFC+ G L++  +LI+ ++  G + +   ++SL+ +      ++   +++  
Sbjct: 558 VTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKA 617

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M   GV PD    +++I+  C    + E + L++++ + G+  SV +  +  L+ G  ++
Sbjct: 618 MHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGY--SVTAATYDALIRGFYKR 675

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
              VEA KL   M K  +  +    D  V+   + G+ E+   L
Sbjct: 676 KKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEITLEL 719



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 174/351 (49%), Gaps = 10/351 (2%)

Query: 95  FMYNRACEMSRIKQNPSIIIDVVEAYKEEG-CVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           F+   +C    IK    I + V E + E G C  +V    V+  LC+  ++  EA  +L 
Sbjct: 212 FLSRLSCNFEGIK----IAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKV-REAHNLLV 266

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M +    PD + Y  V+  +C  G++    +L+  +    L PD   Y ++I   C  G
Sbjct: 267 QMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNG 326

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            + +A  L + M++ G   + V Y+ ++ G C+LG++  A +L  EM ++     P++VT
Sbjct: 327 EVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRK--KIVPDIVT 384

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YTSVI   C  G M EA  + + M   G  P+ VT + LI G+C  G + EA+ + +++V
Sbjct: 385 YTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMV 444

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G   +   Y++L   L +   +  A +L  +M   G++P+    + ++  LC  G + 
Sbjct: 445 QKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIE 504

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +   L E+++  GF    D+  ++ L+   C+     +A +L R ML KR+
Sbjct: 505 QTVKLMEEMDLAGFYP--DTITYTTLMDAYCKMGEMAKAHELLRIMLNKRL 553



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 5/201 (2%)

Query: 151 VLRKMPEFDL---RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
            ++ M E DL    PDTI Y  ++  +C+ G+M  A EL++ M    L P ++T+  ++ 
Sbjct: 506 TVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMN 565

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC +G LED   L + M   G   N   +++L+   C   +M    E+   M   G   
Sbjct: 566 GFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRG--V 623

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+  TY  +I+  C    MKEA  +   M   G +    T   LI+GF       EA +
Sbjct: 624 MPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARK 683

Query: 328 LIDKVVAGGSVSSGGCYSSLV 348
           L +++   G V+    Y   V
Sbjct: 684 LFEEMRKHGLVAEKDIYDIFV 704



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 114/231 (49%), Gaps = 5/231 (2%)

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGI-CRLGSMERALELLGEMEKEGGDCSPNV 271
           G + +A  LF  + R+G   ++ + +  L  + C    ++ A+++  E   E G C  N 
Sbjct: 185 GFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRLSCNFEGIKIAVKVFEEF-PELGVCW-NT 242

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           V+   V+   C  G ++EA  +L +M   G  P+ V+   ++ G+C  G LD+  +L+D+
Sbjct: 243 VSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDE 302

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +   G       Y+++++ L +   + EAE+L   M   GV PD +  + +I   C  G 
Sbjct: 303 LKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGN 362

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           V     L++++ +   +  + +  ++ ++ G+C+    VEA ++   ML K
Sbjct: 363 VSAACKLFDEMRRKKIVPDIVT--YTSVIHGICKSGKMVEAREMFNEMLVK 411



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 39/149 (26%)

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
           W+L K     + P+   +N++++ +C K +M A  E+ K M    + PD  TY  +IKG 
Sbjct: 582 WMLEK----GIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGH 637

Query: 210 CNAGRLEDAC-----------------------------------GLFKVMKRHGCAANL 234
           C A  +++A                                     LF+ M++HG  A  
Sbjct: 638 CKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEK 697

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKE 263
             Y   +D     G+ E  LEL  E   E
Sbjct: 698 DIYDIFVDVNYEEGNWEITLELCDEFMTE 726


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ +L  +A   +  M     +P+ + YN +I  +  +G++  A  ++  M +  + P
Sbjct: 237 LCKEGKLK-KAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEP 295

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D  TY S+I G C  GRLE+A GLF  M   G   N V Y+ L+DG C  G +ERA    
Sbjct: 296 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 355

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM K+G    P+V TY  ++     +G M EA  ++  M   G  P+ +T + LI G+ 
Sbjct: 356 DEMVKKG--IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 413

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             GN  +A+ L +++++ G   +   Y+SL+  L R  R+KEA+ LF K+L  GV PD +
Sbjct: 414 RCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVI 473

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVEAAKL 435
             + M+   C  G V   F L +++++     SV  D    + L+ G CR+    EA  L
Sbjct: 474 MFNAMVDGHCANGNVERAFMLLKEMDR----KSVPPDEVTFNTLMQGRCREGKVEEARML 529

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
              M ++ I       + ++    + GD
Sbjct: 530 LDEMKRRGIKPDHISYNTLISGYGRRGD 557



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 159/311 (51%), Gaps = 5/311 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  +C++ RL  EA  +  KM E  L P+ + YN +I  +C KGD+  A      M   
Sbjct: 303 LISGMCKEGRL-EEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK 361

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P + TY  ++      GR+ +A  + K M++ G   + + Y+ L++G  R G+ ++A
Sbjct: 362 GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKA 421

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  EM  +G    P  VTYTS+I +   +  MKEA  + +++   G +P+ +  + ++
Sbjct: 422 FDLHNEMLSKG--IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMV 479

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  GN++ A+ L+ ++           +++L+    R  +++EA  L  +M   G+K
Sbjct: 480 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK 539

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD ++ + +I      G + + F + +++  IGF  ++ +  ++ L+  LC+      A 
Sbjct: 540 PDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLT--YNALIKCLCKNQEGDLAE 597

Query: 434 KLARFMLKKRI 444
           +L + M+ K I
Sbjct: 598 ELLKEMVNKGI 608



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 164/341 (48%), Gaps = 5/341 (1%)

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
           +RI  N  +  D +   ++   V S  +  ++  +C + R A+EA      M E  + P 
Sbjct: 133 TRIATNRELF-DELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPK 191

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
               N+++ LF +   M  A  L   M  + +   + T+  M+   C  G+L+ A     
Sbjct: 192 IETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIG 251

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M+  G   N+V+Y+ ++ G    G++E A  +L  M  +G    P+  TY S+I   C 
Sbjct: 252 FMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKG--IEPDSYTYGSLISGMCK 309

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
           +G ++EA G+ D+M  +G  PN VT +TLI G+C +G+L+ A+   D++V  G + S   
Sbjct: 310 EGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVST 369

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+ LV  L    R+ EA+ +  +M   G+ PD +  +++I      G   + F L+ ++ 
Sbjct: 370 YNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML 429

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             G   +     ++ L+  L R+N   EA  L   +L + +
Sbjct: 430 SKGIEPT--HVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 468



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 132/229 (57%), Gaps = 2/229 (0%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  ++++M +  + PD I YN +I  +   G+   A +L   M    + P  +TY S+I
Sbjct: 385 EADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 444

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
                  R+++A  LF+ +   G + +++ ++A++DG C  G++ERA  LL EM+++   
Sbjct: 445 YVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKS-- 502

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+ VT+ +++Q  C +G ++EA  +LD M+  G  P+ ++ +TLI G+   G++ +A+
Sbjct: 503 VPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAF 562

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           ++ D++++ G   +   Y++L+  L + +    AE+L  +M+  G+ PD
Sbjct: 563 RVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 611



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 140/300 (46%), Gaps = 17/300 (5%)

Query: 52  TVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYR---HSSFMYNRACEMSRIKQ 108
           T    +D  C    L R F  + +M ++  I  ++ S+Y    H+ FM  R  E      
Sbjct: 334 TYNTLIDGYCNKGDLERAFSYRDEM-VKKGIMPSV-STYNLLVHALFMEGRMGEAD---- 387

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
                 D+++  +++G +       ++ N   +   A +A  +  +M    + P  + Y 
Sbjct: 388 ------DMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYT 441

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           ++I +   +  M  AD+L + +    + PD+I + +M+ G C  G +E A  L K M R 
Sbjct: 442 SLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRK 501

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
               + V ++ L+ G CR G +E A  LL EM++ G    P+ ++Y ++I  +  +G +K
Sbjct: 502 SVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRG--IKPDHISYNTLISGYGRRGDIK 559

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A  + D M ++G  P  +T + LIK  C     D A +L+ ++V  G       Y SL+
Sbjct: 560 DAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLI 619



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 128 SVKMMKVIFNLCEKARL----ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           SV   +V FN   + R       EA  +L +M    ++PD I YN +I  +  +GD+  A
Sbjct: 502 SVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDA 561

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             +   M  I   P ++TY ++IK  C     + A  L K M   G + +   Y +L++G
Sbjct: 562 FRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEG 621

Query: 244 ICRLGSM 250
           +  + ++
Sbjct: 622 MGNVDTL 628


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 159/315 (50%), Gaps = 35/315 (11%)

Query: 154  KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            +M   D+ PD + Y  +I  FC+ GDM+ A +L   M    L PDIIT+  ++ G+C AG
Sbjct: 799  EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAG 858

Query: 214  RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK----------- 262
             ++DA  +   M + GC+ N+V Y+ L+DG+C+ G ++ A ELL EM K           
Sbjct: 859  HIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 918

Query: 263  ----------------------EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
                                  E    + + VTYT+++  +C  G M +A  IL  M   
Sbjct: 919  SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGK 978

Query: 301  GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
            G  P  VT + L+ GFC+ G L++  +L++ ++A G   +   ++ LV +      LK A
Sbjct: 979  GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAA 1038

Query: 361  EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
              ++  M + GV+PDG     +++  C    + E + L+++++  GF  SV +  +SVL+
Sbjct: 1039 TAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVST--YSVLI 1096

Query: 421  LGLCRKNHSVEAAKL 435
             G  ++   VEA ++
Sbjct: 1097 KGFFKRKKFVEAREI 1111



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 146/258 (56%), Gaps = 3/258 (1%)

Query: 138  LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            LC   +LA EA     +M    + PDTI+Y  ++  FC++GD+ AA +    M   D+ P
Sbjct: 749  LCRICKLA-EAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITP 807

Query: 198  DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            D++TY ++I GFC  G + +A  LF  M   G   +++ ++ L++G C+ G ++ A  + 
Sbjct: 808  DVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVH 867

Query: 258  GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
              M + G  CSPNVVTYT++I   C +G +  A  +L  M  +G  PN  T ++++ G C
Sbjct: 868  NHMIQAG--CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 925

Query: 318  VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
              GN++EA +L+ +  A G  +    Y++L+    ++  + +A+++ ++ML  G++P  +
Sbjct: 926  KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIV 985

Query: 378  ACSVMIRELCLGGQVLEG 395
              +V++   CL G + +G
Sbjct: 986  TFNVLMNGFCLHGMLEDG 1003



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 136/266 (51%), Gaps = 2/266 (0%)

Query: 141  KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
            KA    +A  V   M +    P+ + Y  +I   C++GD+ +A+EL+  M  I L P+I 
Sbjct: 856  KAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 915

Query: 201  TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            TY S++ G C +G +E+A  L    +  G  A+ V Y+ L+D  C+ G M++A E+L EM
Sbjct: 916  TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEM 975

Query: 261  EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              +G    P +VT+  ++  FC  GM+++   +L+ M A G APN  T + L+K +C+  
Sbjct: 976  LGKG--LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRN 1033

Query: 321  NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            NL  A  +   + + G    G  Y +LV      + +KEA  LF +M   G        S
Sbjct: 1034 NLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYS 1093

Query: 381  VMIRELCLGGQVLEGFCLYEDIEKIG 406
            V+I+      + +E   +++ + + G
Sbjct: 1094 VLIKGFFKRKKFVEAREIFDQMRRDG 1119



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 159/330 (48%), Gaps = 6/330 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNL-CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I V   + E G   +V    ++ +  C+  R+ NEA  +L  M      PD I Y+ VI 
Sbjct: 654 IIVFREFPEVGVCWNVASYNIVIHFVCQLGRI-NEAHHLLLLMELKGYTPDVISYSTVIN 712

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            +C  G++    +L++ M    L P+  TY S+I   C   +L +A   F  M   G   
Sbjct: 713 GYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILP 772

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           + + Y+ L+DG C+ G +  A +   EM     D +P+V+TYT++I  FC  G M EA  
Sbjct: 773 DTIVYTTLVDGFCKRGDIRAASKFFYEMHSR--DITPDVLTYTAIISGFCQIGDMVEAGK 830

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M   G  P+ +T + L+ G+C  G++ +A+++ + ++  G   +   Y++L+  L 
Sbjct: 831 LFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 890

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +   L  A +L  +M   G++P+    + ++  LC  G + E   L  + E  G   + D
Sbjct: 891 KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL--NAD 948

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +  ++ L+   C+     +A ++   ML K
Sbjct: 949 TVTYTTLMDAYCKSGEMDKAQEILTEMLGK 978



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 14/286 (4%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI-----DLYPDIITYVSMIKGFCNAGRLED 217
           D  +  ++I  F E+  +   +  ++   L+     D   D   +    +     G L +
Sbjct: 557 DLKVAQSLISSFWERPKLNVTESFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVEFGMLPE 616

Query: 218 ACGLFKVMKRHGCAANLVA---YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           A  +F+ M  +G   ++ +   Y A L   C       A+ +  E   E G C  NV +Y
Sbjct: 617 ARKVFEKMLNYGLVLSVDSCNVYLARLSKDC--NKTATAIIVFREF-PEVGVCW-NVASY 672

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             VI   C  G + EA  +L  ME  G  P+ ++ ST+I G+C  G LD+ ++LI+K+  
Sbjct: 673 NIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQ 732

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G   +   Y S++  L R  +L EAE+ FS+M+  G+ PD +  + ++   C  G +  
Sbjct: 733 KGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRA 792

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
               + ++        V +  ++ ++ G C+    VEA KL   ML
Sbjct: 793 ASKFFYEMHSRDITPDVLT--YTAIISGFCQIGDMVEAGKLFHEML 836



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 38/208 (18%)

Query: 134  VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            ++  LC+   +  EA+ ++ +     L  DT+ Y  ++  +C+ G+M  A E++  M   
Sbjct: 920  IVNGLCKSGNI-EEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGK 978

Query: 194  DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA----------------- 236
             L P I+T+  ++ GFC  G LED   L   M   G A N                    
Sbjct: 979  GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAA 1038

Query: 237  ------------------YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
                              Y  L+ G C   +M+ A  L  EM+ +G   S  V TY+ +I
Sbjct: 1039 TAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVS--VSTYSVLI 1096

Query: 279  QIFCGKGMMKEALGILDRMEALGCAPNR 306
            + F  +    EA  I D+M   G A ++
Sbjct: 1097 KGFFKRKKFVEAREIFDQMRRDGLAADK 1124


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 165/328 (50%), Gaps = 9/328 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ +L  +A   +  M     +P+ + YN +I  +  +G++  A  ++  M +  + P
Sbjct: 259 LCKEGKL-KKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEP 317

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D  TY S+I G C  GRLE+A GLF  M   G   N V Y+ L+DG C  G +ERA    
Sbjct: 318 DSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYR 377

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM K+G    P+V TY  ++     +G M EA  ++  M   G  P+ +T + LI G+ 
Sbjct: 378 DEMVKKG--IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 435

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             GN  +A+ L +++++ G   +   Y+SL+  L R  R+KEA+ LF K+L  GV PD +
Sbjct: 436 RCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVI 495

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVEAAKL 435
             + M+   C  G V   F L +++++     SV  D    + L+ G CR+    EA  L
Sbjct: 496 MFNAMVDGHCANGNVERAFMLLKEMDR----KSVPPDEVTFNTLMQGRCREGKVEEARML 551

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
              M ++ I       + ++    + GD
Sbjct: 552 LDEMKRRGIKPDHISYNTLISGYGRRGD 579



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 159/311 (51%), Gaps = 5/311 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  +C++ RL  EA  +  KM E  L P+ + YN +I  +C KGD+  A      M   
Sbjct: 325 LISGMCKEGRL-EEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK 383

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P + TY  ++      GR+ +A  + K M++ G   + + Y+ L++G  R G+ ++A
Sbjct: 384 GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKA 443

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  EM  +G    P  VTYTS+I +   +  MKEA  + +++   G +P+ +  + ++
Sbjct: 444 FDLHNEMLSKG--IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMV 501

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  GN++ A+ L+ ++           +++L+    R  +++EA  L  +M   G+K
Sbjct: 502 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK 561

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD ++ + +I      G + + F + +++  IGF  ++ +  ++ L+  LC+      A 
Sbjct: 562 PDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLT--YNALIKCLCKNQEGDLAE 619

Query: 434 KLARFMLKKRI 444
           +L + M+ K I
Sbjct: 620 ELLKEMVNKGI 630



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 160/332 (48%), Gaps = 5/332 (1%)

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
           +RI  N  +  D +   ++   V S  +  ++  +C + R A+EA      M E  + P 
Sbjct: 155 TRIATNRELF-DELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPK 213

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
               N+++ LF +   M  A  L   M  + +   + T+  M+   C  G+L+ A     
Sbjct: 214 IETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIG 273

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M+  G   N+V+Y+ ++ G    G++E A  +L  M  +G    P+  TY S+I   C 
Sbjct: 274 FMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKG--IEPDSYTYGSLISGMCK 331

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
           +G ++EA G+ D+M  +G  PN VT +TLI G+C +G+L+ A+   D++V  G + S   
Sbjct: 332 EGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVST 391

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+ LV  L    R+ EA+ +  +M   G+ PD +  +++I      G   + F L+ ++ 
Sbjct: 392 YNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEML 451

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             G   +     ++ L+  L R+N   EA  L
Sbjct: 452 SKGIEPT--HVTYTSLIYVLSRRNRMKEADDL 481



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 132/229 (57%), Gaps = 2/229 (0%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  ++++M +  + PD I YN +I  +   G+   A +L   M    + P  +TY S+I
Sbjct: 407 EADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 466

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
                  R+++A  LF+ +   G + +++ ++A++DG C  G++ERA  LL EM+++   
Sbjct: 467 YVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKS-- 524

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+ VT+ +++Q  C +G ++EA  +LD M+  G  P+ ++ +TLI G+   G++ +A+
Sbjct: 525 VPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAF 584

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           ++ D++++ G   +   Y++L+  L + +    AE+L  +M+  G+ PD
Sbjct: 585 RVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 633



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 140/300 (46%), Gaps = 17/300 (5%)

Query: 52  TVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYR---HSSFMYNRACEMSRIKQ 108
           T    +D  C    L R F  + +M ++  I  ++ S+Y    H+ FM  R  E      
Sbjct: 356 TYNTLIDGYCNKGDLERAFSYRDEM-VKKGIMPSV-STYNLLVHALFMEGRMGEAD---- 409

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
                 D+++  +++G +       ++ N   +   A +A  +  +M    + P  + Y 
Sbjct: 410 ------DMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYT 463

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           ++I +   +  M  AD+L + +    + PD+I + +M+ G C  G +E A  L K M R 
Sbjct: 464 SLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRK 523

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
               + V ++ L+ G CR G +E A  LL EM++ G    P+ ++Y ++I  +  +G +K
Sbjct: 524 SVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRG--IKPDHISYNTLISGYGRRGDIK 581

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A  + D M ++G  P  +T + LIK  C     D A +L+ ++V  G       Y SL+
Sbjct: 582 DAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLI 641



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 128 SVKMMKVIFNLCEKARL----ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           SV   +V FN   + R       EA  +L +M    ++PD I YN +I  +  +GD+  A
Sbjct: 524 SVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDA 583

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             +   M  I   P ++TY ++IK  C     + A  L K M   G + +   Y +L++G
Sbjct: 584 FRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEG 643

Query: 244 ICRLGSM 250
           +  + ++
Sbjct: 644 MGNVDTL 650


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 157/315 (49%), Gaps = 35/315 (11%)

Query: 154  KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            +M   D+ PD + Y  +I  FC+ GDM+ A +L   M    L PD +T+  +I G+C AG
Sbjct: 819  EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 878

Query: 214  RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK----------- 262
             ++DA  +   M + GC+ N+V Y+ L+DG+C+ G ++ A ELL EM K           
Sbjct: 879  HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 938

Query: 263  ----------------------EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
                                  E    + + VTYT+++  +C  G M +A  IL  M   
Sbjct: 939  SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 998

Query: 301  GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
            G  P  VT + L+ GFC+ G L++  +L++ ++A G   +   ++SLV +      LK A
Sbjct: 999  GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 1058

Query: 361  EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
              ++  M + GV PDG     +++  C    + E + L+++++  GF  SV    +SVL+
Sbjct: 1059 TAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGF--SVSVSTYSVLI 1116

Query: 421  LGLCRKNHSVEAAKL 435
             G  ++   +EA ++
Sbjct: 1117 KGFLKRKKFLEAREV 1131



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 144/258 (55%), Gaps = 3/258 (1%)

Query: 138  LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            LC   +LA EA     +M    + PDT++Y  +I  FC++GD+ AA +    M   D+ P
Sbjct: 769  LCRICKLA-EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITP 827

Query: 198  DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            D++TY ++I GFC  G + +A  LF  M   G   + V ++ L++G C+ G M+ A  + 
Sbjct: 828  DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 887

Query: 258  GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
              M + G  CSPNVVTYT++I   C +G +  A  +L  M  +G  PN  T ++++ G C
Sbjct: 888  NHMIQAG--CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 945

Query: 318  VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
              GN++EA +L+ +  A G  +    Y++L+    ++  + +A+++  +ML  G++P  +
Sbjct: 946  KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 1005

Query: 378  ACSVMIRELCLGGQVLEG 395
              +V++   CL G + +G
Sbjct: 1006 TFNVLMNGFCLHGMLEDG 1023



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 3/279 (1%)

Query: 128  SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            SV   ++I   C KA    +A  V   M +    P+ + Y  +I   C++GD+ +A+EL+
Sbjct: 864  SVTFTELINGYC-KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 922

Query: 188  KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
              M  I L P+I TY S++ G C +G +E+A  L    +  G  A+ V Y+ L+D  C+ 
Sbjct: 923  HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 982

Query: 248  GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
            G M++A E+L EM  +G    P +VT+  ++  FC  GM+++   +L+ M A G APN  
Sbjct: 983  GEMDKAQEILKEMLGKG--LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNAT 1040

Query: 308  TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            T ++L+K +C+  NL  A  +   + + G    G  Y +LV    + + +KEA  LF +M
Sbjct: 1041 TFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM 1100

Query: 368  LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
               G        SV+I+      + LE   +++ + + G
Sbjct: 1101 KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 1139



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 161/363 (44%), Gaps = 40/363 (11%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           V E     G V+SV    V    L +       A+ V R+ PE  +  +   YN VI   
Sbjct: 640 VFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFV 699

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN- 233
           C+ G +  A  L+  M L    PD+I+Y +++ G+C  G L+    L +VMKR G   N 
Sbjct: 700 CQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNS 759

Query: 234 ----------------------------------LVAYSALLDGICRLGSMERALELLGE 259
                                              V Y+ L+DG C+ G +  A +   E
Sbjct: 760 YIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE 819

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M     D +P+V+TYT++I  FC  G M EA  +   M   G  P+ VT + LI G+C  
Sbjct: 820 MHSR--DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA 877

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G++ +A+++ + ++  G   +   Y++L+  L +   L  A +L  +M   G++P+    
Sbjct: 878 GHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTY 937

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + ++  LC  G + E   L  + E  G   + D+  ++ L+   C+     +A ++ + M
Sbjct: 938 NSIVNGLCKSGNIEEAVKLVGEFEAAGL--NADTVTYTTLMDAYCKSGEMDKAQEILKEM 995

Query: 440 LKK 442
           L K
Sbjct: 996 LGK 998



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 130/257 (50%), Gaps = 8/257 (3%)

Query: 122  EEGCVVSVKMMKVIFN-LCEKARL--ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
            + GC  +V     + + LC++  L  ANE   +L +M +  L+P+   YN+++   C+ G
Sbjct: 892  QAGCSPNVVTYTTLIDGLCKEGDLDSANE---LLHEMWKIGLQPNIFTYNSIVNGLCKSG 948

Query: 179  DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
            ++  A +L+       L  D +TY +++  +C +G ++ A  + K M   G    +V ++
Sbjct: 949  NIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 1008

Query: 239  ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
             L++G C  G +E   +LL  M  +G   +PN  T+ S+++ +C +  +K A  I   M 
Sbjct: 1009 VLMNGFCLHGMLEDGEKLLNWMLAKG--IAPNATTFNSLVKQYCIRNNLKAATAIYKDMC 1066

Query: 299  ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
            + G  P+  T   L+KG C   N+ EA+ L  ++   G   S   YS L+   ++ K+  
Sbjct: 1067 SRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 1126

Query: 359  EAEKLFSKMLASGVKPD 375
            EA ++F +M   G+  D
Sbjct: 1127 EAREVFDQMRREGLAAD 1143



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 128/285 (44%), Gaps = 8/285 (2%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI-----DLYPDIITYVSMIKGFCNAGRLED 217
           D  +  ++I  F E+  +   D  ++   L+     D   D   +    +   + G L +
Sbjct: 577 DLKVAQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLRE 636

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  +F+ M  +G   ++ + +  L  + +         ++     E G C  NV +Y  V
Sbjct: 637 ARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCW-NVASYNIV 695

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I   C  G +KEA  +L  ME  G  P+ ++ ST++ G+C  G LD+ ++LI+ +   G 
Sbjct: 696 IHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGL 755

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
             +   Y S++  L R  +L EAE+ FS+M+  G+ PD +  + +I   C  G +     
Sbjct: 756 KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK 815

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            + ++        V +  ++ ++ G C+    VEA KL   M  K
Sbjct: 816 FFYEMHSRDITPDVLT--YTAIISGFCQIGDMVEAGKLFHEMFCK 858



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 2/161 (1%)

Query: 146  NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            ++A  +L++M    L+P  + +N ++  FC  G +   ++L+  M    + P+  T+ S+
Sbjct: 986  DKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSL 1045

Query: 206  IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
            +K +C    L+ A  ++K M   G   +   Y  L+ G C+  +M+ A  L  EM+ +G 
Sbjct: 1046 VKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGF 1105

Query: 266  DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
              S  V TY+ +I+ F  +    EA  + D+M   G A ++
Sbjct: 1106 SVS--VSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADK 1144


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 164/288 (56%), Gaps = 4/288 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM +LRKM E +++ D + Y+ +I   C+ G +  A  L   M +     DIITY ++I 
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFCNAGR +D   L + M +   + N+V +S L+D   + G +  A +LL EM + G   
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRG--I 364

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +PN +TY S+I  FC +  ++EA+ ++D M + GC P+ +T + LI G+C    +D+  +
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  ++   G +++   Y++LV    ++ +L+ A+KLF +M++  V+PD ++  +++  LC
Sbjct: 425 LFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             G++ +   ++  IEK      +D  I+ +++ G+C  +   +A  L
Sbjct: 485 DNGELEKALEIFGKIEKSKM--ELDIGIYMIIIHGMCNASKVDDAWDL 530



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 178/394 (45%), Gaps = 39/394 (9%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           +QS    +   +NR        +   +++ + +  + +G   S+  + ++ N   + R  
Sbjct: 80  IQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKL 139

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A   + K+ +    PDT+I+N ++   C +  +  A EL+  M  +   P +IT  ++
Sbjct: 140 SYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTL 199

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAAN-------------------------------- 233
           + G C  G++ DA  L   M   G   N                                
Sbjct: 200 VNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNI 259

Query: 234 ---LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
               V YS ++DG+C+ GS++ A  L  EME +G     +++TY ++I  FC  G   + 
Sbjct: 260 KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG--FKADIITYNTLIGGFCNAGRWDDG 317

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             +L  M     +PN VT S LI  F  EG L EA QL+ +++  G   +   Y+SL+  
Sbjct: 318 AKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDG 377

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             +  RL+EA ++   M++ G  PD +  +++I   C   ++ +G  L+ ++   G +++
Sbjct: 378 FCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIAN 437

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             +  ++ L+ G C+      A KL + M+ +R+
Sbjct: 438 TVT--YNTLVQGFCQSGKLEVAKKLFQEMVSRRV 469



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 133/267 (49%), Gaps = 2/267 (0%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +L++M +  + P+TI YN++I  FC++  +  A +++  M      PDI+T+  +I
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILI 410

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C A R++D   LF+ M   G  AN V Y+ L+ G C+ G +E A +L  EM      
Sbjct: 411 NGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR--R 468

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P++V+Y  ++   C  G +++AL I  ++E      +      +I G C    +D+A+
Sbjct: 469 VRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAW 528

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L   +   G       Y+ ++ EL R   L +A+ LF KM   G  PD L  +++IR  
Sbjct: 529 DLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAH 588

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDS 413
                      L E+++  GF + V +
Sbjct: 589 LGDDDATTAAELIEEMKSSGFPADVST 615



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 137/331 (41%), Gaps = 35/331 (10%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           A++A+ + R M +    P  I +N +     +         L K M    +   I T   
Sbjct: 69  ADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSI 128

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           MI  FC   +L  A      + + G   + V ++ LL+G+C    +  ALEL+  M + G
Sbjct: 129 MINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMG 188

Query: 265 -------------GDC--------------------SPNVVTYTSVIQIFCGKGMMKEAL 291
                        G C                     PN VTY  V+ + C  G    A+
Sbjct: 189 HKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAM 248

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +L +ME      + V  S +I G C +G+LD A+ L +++   G  +    Y++L+   
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGF 308

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
               R  +  KL   M+   + P+ +  SV+I      G++ E   L +++ + G   + 
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI--AP 366

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           ++  ++ L+ G C++N   EA ++   M+ K
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISK 397



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 122/255 (47%), Gaps = 10/255 (3%)

Query: 86  LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141
           +Q     ++  YN      C+ +R+++     I +V+    +GC   +    ++ N   K
Sbjct: 360 MQRGIAPNTITYNSLIDGFCKENRLEE----AIQMVDLMISKGCDPDIMTFNILINGYCK 415

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           A   ++ + + R+M    +  +T+ YN +++ FC+ G +  A +L + M    + PDI++
Sbjct: 416 ANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVS 475

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  ++ G C+ G LE A  +F  +++     ++  Y  ++ G+C    ++ A +L   + 
Sbjct: 476 YKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLP 535

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            +G     +   Y  +I   C K  + +A  +  +M   G AP+ +T + LI+    + +
Sbjct: 536 LKG--VKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDD 593

Query: 322 LDEAYQLIDKVVAGG 336
              A +LI+++ + G
Sbjct: 594 ATTAAELIEEMKSSG 608


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 180/371 (48%), Gaps = 39/371 (10%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N S+ +DV +  ++ GC  +V     I +   K RL N+AM  L +M E  + P+   YN
Sbjct: 213 NTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYN 272

Query: 169 NVIRLFCEKGDMIAADELMKGM----------------------GLID------------ 194
           +++  FC  G +  A  L K M                      G++             
Sbjct: 273 SIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEK 332

Query: 195 -LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PDI TY +++ G+C    + +A  +F++M R GCA    +Y+ L++G C+   M+ A
Sbjct: 333 GVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEA 392

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL EM  +    +P+ VTY++++Q  C  G  KEAL +   M + G  PN VT   L+
Sbjct: 393 KSLLAEMYHKA--LNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILL 450

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC  G+LDEA +L+  +       +   Y+ L+  +    +L+ A++LFSK+   G +
Sbjct: 451 DGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTR 510

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD    +VMI+ L   G   E + L+  +E  GFL   +S  ++V++ G  +   S  A 
Sbjct: 511 PDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLP--NSCSYNVMIQGFLQNQDSSTAI 568

Query: 434 KLARFMLKKRI 444
           +L   M+ KR 
Sbjct: 569 RLIDEMVGKRF 579



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 181/417 (43%), Gaps = 76/417 (18%)

Query: 85  ALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL 144
           AL S YR           M RI   PS    VVE  K  G     K    + +LC +  L
Sbjct: 77  ALASFYR-----------MVRINPRPS----VVEFGKFLGSFAKKKQYSTVVSLCNQMDL 121

Query: 145 ----------------------ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
                                  + ++ VL KM +  + PD I +N +I   C +G +  
Sbjct: 122 FRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKE 181

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A EL   M      P++I+Y ++I G C  G    A  +FK M+++GC  N+V YS ++D
Sbjct: 182 AVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIID 241

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            +C+   +  A+E L EM + G    PNV TY S++  FC  G + EA  +   M     
Sbjct: 242 SLCKDRLVNDAMEFLSEMVERG--IPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDV 299

Query: 303 APNRVTISTLIKGFCVEGN-----------------------------------LDEAYQ 327
            PN VT + L+ G C EG                                    ++EA +
Sbjct: 300 MPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKK 359

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           + + ++  G       Y+ L+    +++R+ EA+ L ++M    + PD +  S +++ LC
Sbjct: 360 VFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLC 419

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             G+  E   L++++   G   ++ +  + +LL G C+  H  EA KL + M +K++
Sbjct: 420 QLGRPKEALNLFKEMCSYGPHPNLVT--YVILLDGFCKHGHLDEALKLLKSMKEKKL 474



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 149/299 (49%), Gaps = 8/299 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+    +M   + RP  + +   +  F +K        L   M L  +  ++ +   +
Sbjct: 75  DDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNIL 134

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I   C    ++ +  +   M + G   + + ++AL++G+C  G ++ A+EL  EM K G 
Sbjct: 135 INCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGH 194

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  PNV++YT+VI   C  G    A+ +  +ME  GC PN VT ST+I   C +  +++A
Sbjct: 195 E--PNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDA 252

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            + + ++V  G   +   Y+S+V       +L EA +LF +M+   V P+ +  ++++  
Sbjct: 253 MEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDG 312

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC  G V E   ++E + + G    V+ DI  ++ L+ G C +    EA K+   M++K
Sbjct: 313 LCKEGMVSEARLVFETMTEKG----VEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRK 367



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 6/180 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++ R K+  ++  ++         V  V ++      C+   L +EA+ +L+ M E  L
Sbjct: 419 CQLGRPKEALNLFKEMCSYGPHPNLVTYVILLD---GFCKHGHL-DEALKLLKSMKEKKL 474

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + Y  +I      G +  A EL   +      PDI TY  MIKG    G  ++A  
Sbjct: 475 EPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYD 534

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF+ M+  G   N  +Y+ ++ G  +      A+ L+ EM   G   S N+ T+  ++ +
Sbjct: 535 LFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEM--VGKRFSVNLSTFQMLLDL 592


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 165/333 (49%), Gaps = 12/333 (3%)

Query: 134 VIFNLCE-KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           ++F+L E K + A E +     M     +P+ + YN +I  +  +G++  A  ++  M +
Sbjct: 180 IVFDLLEGKLKKAREFIGF---MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRV 236

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             + PD  TY S+I G C  GRLE+A GLF  M   G   N V Y+ L+DG C  G +ER
Sbjct: 237 KGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLER 296

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A     EM K+G    P+V TY  ++     +G M EA  ++  M   G  P+ +T + L
Sbjct: 297 AFSYRDEMVKKG--IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNIL 354

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G+   GN   A+ L +++++ G   +   Y+SL+  L R  R+KEA+ LF K+L  GV
Sbjct: 355 INGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 414

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSV 430
            PD +  + MI   C  G V   F L +++++     SV  D    + L+ G CR+    
Sbjct: 415 SPDVIMFNAMIDGHCANGNVERAFMLLKEMDR----KSVPPDEVTFNTLMQGRCREGKVE 470

Query: 431 EAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           EA  L   M  + I       + ++    + GD
Sbjct: 471 EARMLLDEMKXRGIKPDHISYNTLISGYGRRGD 503



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 159/311 (51%), Gaps = 5/311 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  +C++ RL  EA  +  KM E  L P+ + YN +I  +C KGD+  A      M   
Sbjct: 249 LISGMCKEGRL-EEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK 307

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P + TY  ++      GR+ +A  + K M++ G   + + Y+ L++G  R G+ +RA
Sbjct: 308 GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRA 367

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  EM  +G    P  VTYTS+I +   +  MKEA  + +++   G +P+ +  + +I
Sbjct: 368 FDLHNEMLSKG--IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMI 425

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  GN++ A+ L+ ++           +++L+    R  +++EA  L  +M   G+K
Sbjct: 426 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIK 485

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD ++ + +I      G + + F + +++  IGF  ++ +  ++ L+  LC+      A 
Sbjct: 486 PDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLT--YNALIKCLCKNQEGDLAE 543

Query: 434 KLARFMLKKRI 444
           +L + M+ K I
Sbjct: 544 ELLKEMVNKGI 554



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 147/262 (56%), Gaps = 8/262 (3%)

Query: 119 AYKEE----GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +Y++E    G + SV    ++ + L  + R+  EA  ++++M +  + PD I YN +I  
Sbjct: 299 SYRDEMVKKGIMPSVSTYNLLVHALFMEGRMG-EADDMIKEMRKKGIIPDAITYNILING 357

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +   G+   A +L   M    + P  +TY S+I       R+++A  LF+ +   G + +
Sbjct: 358 YSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 417

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           ++ ++A++DG C  G++ERA  LL EM+++     P+ VT+ +++Q  C +G ++EA  +
Sbjct: 418 VIMFNAMIDGHCANGNVERAFMLLKEMDRKS--VPPDEVTFNTLMQGRCREGKVEEARML 475

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           LD M+  G  P+ ++ +TLI G+   G++ +A+ + D++++ G   +   Y++L+  L +
Sbjct: 476 LDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCK 535

Query: 354 TKRLKEAEKLFSKMLASGVKPD 375
            +    AE+L  +M+  G+ PD
Sbjct: 536 NQEGDLAEELLKEMVNKGISPD 557



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 17/300 (5%)

Query: 52  TVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYR---HSSFMYNRACEMSRIKQ 108
           T    +D  C    L R F  + +M ++  I  ++ S+Y    H+ FM  R  E      
Sbjct: 280 TYNTLIDGYCNKGDLERAFSYRDEM-VKKGIMPSV-STYNLLVHALFMEGRMGEAD---- 333

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
                 D+++  +++G +       ++ N   +   A  A  +  +M    + P  + Y 
Sbjct: 334 ------DMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYT 387

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           ++I +   +  M  AD+L + +    + PD+I + +MI G C  G +E A  L K M R 
Sbjct: 388 SLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRK 447

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
               + V ++ L+ G CR G +E A  LL EM+  G    P+ ++Y ++I  +  +G +K
Sbjct: 448 SVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRG--IKPDHISYNTLISGYGRRGDIK 505

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A  + D M ++G  P  +T + LIK  C     D A +L+ ++V  G       Y SL+
Sbjct: 506 DAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLI 565



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 128 SVKMMKVIFNLCEKARL----ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           SV   +V FN   + R       EA  +L +M    ++PD I YN +I  +  +GD+  A
Sbjct: 448 SVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDA 507

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             +   M  I   P ++TY ++IK  C     + A  L K M   G + +   Y +L++G
Sbjct: 508 FXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEG 567

Query: 244 ICRLGSM 250
           +  + ++
Sbjct: 568 MGNVDTL 574


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 169/311 (54%), Gaps = 4/311 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L+PD + Y  +I ++C+ G+M+ A  L   M  + + P+I+TY ++I G C  G L+ A 
Sbjct: 429 LKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTAN 488

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M++ G   N+  Y+++++GIC+ G++E+A++L+ EME  G D  P+ +TYT+VI 
Sbjct: 489 ELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGID--PDAITYTTVID 546

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +C  G + +A  +L  M   G  P  VT + L+ GFC+ G L++  +L+  ++  G V 
Sbjct: 547 AYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVP 606

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y++L+ +      +    K++ +M   GV PD    +++I+  C    + E + LY
Sbjct: 607 DAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLY 666

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459
           +++ + G++ +V S  ++ L+    +K   +EA +L   M    +   G   +  V+   
Sbjct: 667 KEMIEKGYVPTVTS--YNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCY 724

Query: 460 KSGDEELITNL 470
           + GD E+  NL
Sbjct: 725 EEGDVEITLNL 735



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 166/317 (52%), Gaps = 8/317 (2%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           VV   ++   F L    R AN+  W   +M    + PD I Y  +I+ F + G +I    
Sbjct: 364 VVYTTLIHGFFKLGH-VRTANK--W-FDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQN 419

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L   M    L PD +TY ++I  +C AG + +A  L   M + G   N+V Y AL+DG+C
Sbjct: 420 LFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLC 479

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G ++ A ELL EM K+G     NV  Y S++   C  G +++A+ ++  ME  G  P+
Sbjct: 480 KHGELDTANELLDEMRKKG--LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPD 537

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            +T +T+I  +C  G++D+A++L+ +++  G   +   ++ L+        L++ ++L  
Sbjct: 538 AITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLG 597

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            ML  G+ PD +  + ++++ C+   +     +Y+ +   G   + DS+ +++L+ G C+
Sbjct: 598 WMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGV--APDSNTYNILIKGHCK 655

Query: 426 KNHSVEAAKLARFMLKK 442
             +  EA  L + M++K
Sbjct: 656 ARNLKEAWFLYKEMIEK 672



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 149/293 (50%), Gaps = 6/293 (2%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C+   + N A  +  +M +  + P+ + Y  +I   C+ G++  A+EL+  M    L  +
Sbjct: 444 CKAGEMVN-AFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLN 502

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           +  Y SM+ G C AG +E A  L K M+  G   + + Y+ ++D  CRLG +++A +LL 
Sbjct: 503 VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM   G    P VVT+  ++  FC  GM+++   +L  M   G  P+ +T +TL+K  C+
Sbjct: 563 EMLDRG--LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCI 620

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
             +++   ++  ++   G       Y+ L+    + + LKEA  L+ +M+  G  P   +
Sbjct: 621 RNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTS 680

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
            + +I+      ++LE   L+E++   G ++  D +I++   + +C +   VE
Sbjct: 681 YNALIKRFYKKKKILEARELFEEMRGHGLVA--DGEIYN-FFVDMCYEEGDVE 730



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 169/376 (44%), Gaps = 37/376 (9%)

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI-FNLCEKARLANEAMWVLRKMPEFDLR 161
           +SRI  N   I   ++ + E G   +     +I ++LC   ++  EA  +L +M      
Sbjct: 232 LSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKV-KEAHRLLMQMDFRSST 290

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + Y+ VI  +C  G++  A +LM  M +  L P+  TY S+I   C  G+  +A  +
Sbjct: 291 PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKV 350

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK------------------E 263
            + M       + V Y+ L+ G  +LG +  A +   EM                    +
Sbjct: 351 LREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQ 410

Query: 264 GGDC---------------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           GG                  P+ VTYT++I ++C  G M  A  + + M  +G  PN VT
Sbjct: 411 GGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVT 470

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
              LI G C  G LD A +L+D++   G   +   Y+S+V  + +   +++A KL  +M 
Sbjct: 471 YGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEME 530

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
            +G+ PD +  + +I   C  G + +   L +++   G   +V +   +VL+ G C    
Sbjct: 531 VAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVT--FNVLMNGFCMLGM 588

Query: 429 SVEAAKLARFMLKKRI 444
             +  +L  +ML+K I
Sbjct: 589 LEDGDRLLGWMLEKGI 604



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 150/302 (49%), Gaps = 20/302 (6%)

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I++FCE G                +  +  +Y  +I   C  G++++A  L   M     
Sbjct: 246 IKVFCEYG----------------ISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSS 289

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             ++V+YS ++DG C LG +++AL+L+ +M+ +G    PN  TY S+I + C  G   EA
Sbjct: 290 TPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKG--LKPNRYTYNSIILLLCKIGKSFEA 347

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             +L  M +    P+ V  +TLI GF   G++  A +  D++++         Y++L+  
Sbjct: 348 EKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQG 407

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             +  ++ E + LF +M++ G+KPD +  + +I   C  G+++  F L+ ++ ++G   +
Sbjct: 408 FGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPN 467

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           + +  +  L+ GLC+      A +L   M KK + L     + +V  + K+G+ E    L
Sbjct: 468 IVT--YGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKL 525

Query: 471 PK 472
            K
Sbjct: 526 MK 527



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 117/506 (23%), Positives = 224/506 (44%), Gaps = 56/506 (11%)

Query: 3   RFSLSRILSSSVNIKNSKIFALHFTTASPAER----FYTHLQKNPNNIEK--TLATVKAK 56
           RFS  ++ S+S +  N   F L     + ++R    F    +  P+   K  T+   +  
Sbjct: 15  RFSCLQVSSNSASRCNFLPFFLSRRWLTQSQRVPSSFLLQTRPFPDYSPKKPTIRDTELI 74

Query: 57  LDSTCVI-----EVLHRCFPS-QSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP 110
            D T VI     E LHR   + +S       IW  +     ++  +     + +R+++ P
Sbjct: 75  HDITAVIKLRRSEPLHRILKAHESNFRYDHLIWVLMNIKNDYNLVL--AFFDWARVRREP 132

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR------LANEAMWVLRKMPEFDLR--- 161
           S+         E  C++    + V+ N    A         N  + +  KM +F  R   
Sbjct: 133 SL---------EARCIII--HIAVVSNDLRLAHELVHDYFLNSKLEIGVKMTQFTHRLIY 181

Query: 162 ------PDTIIYNNVIRLFCEKGDMIAADELMKGM---GLIDLYPDIITYVSMIKGFCNA 212
                 P+ I ++   ++  E G +  A +L+  +   GL+        ++S I    N+
Sbjct: 182 TYKYWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIAN--NS 239

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
             +E A    KV   +G + N  +Y+ ++  +CRLG ++ A  LL +M+      +P+VV
Sbjct: 240 EGIEMA---IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSS--TPDVV 294

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           +Y++VI  +C  G +K+AL ++D M+  G  PNR T +++I   C  G   EA +++ ++
Sbjct: 295 SYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREM 354

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           ++   +     Y++L+    +   ++ A K F +ML+  + PD +  + +I+    GG+V
Sbjct: 355 MSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKV 414

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK----KRIWLQG 448
           +E   L+ ++   G     D   ++ L+   C+    V A  L   M++      I   G
Sbjct: 415 IEPQNLFHEMISRGL--KPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYG 472

Query: 449 PYVDKIVEHLKKSGDEELITNLPKIG 474
             +D + +H +     EL+  + K G
Sbjct: 473 ALIDGLCKHGELDTANELLDEMRKKG 498



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 2/234 (0%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++++  +++G  ++V +   + N   KA    +A+ ++++M    + PD I Y  VI  +
Sbjct: 489 ELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAY 548

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C  GD+  A +L++ M    L P ++T+  ++ GFC  G LED   L   M   G   + 
Sbjct: 549 CRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDA 608

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + Y+ L+   C   SM    ++   M  +G   +P+  TY  +I+  C    +KEA  + 
Sbjct: 609 ITYNTLMKQHCIRNSMNTTTKIYKRMRNQG--VAPDSNTYNILIKGHCKARNLKEAWFLY 666

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             M   G  P   + + LIK F  +  + EA +L +++   G V+ G  Y+  V
Sbjct: 667 KEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFV 720



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 54/114 (47%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N    + ++M    + PD+  YN +I+  C+  ++  A  L K M      P + +Y ++
Sbjct: 625 NTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNAL 684

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           IK F    ++ +A  LF+ M+ HG  A+   Y+  +D     G +E  L L  E
Sbjct: 685 IKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDE 738


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 222/463 (47%), Gaps = 23/463 (4%)

Query: 3   RFSLSRILSS----SVNIKNSKIFALHFTT------ASPAERFYTHLQKNPNNIEK---T 49
           RF +SR+L++    S   KN     L F        A   E+ Y  L+   + + K   +
Sbjct: 33  RFHISRVLNNDFVESTERKNG--LGLVFPEKHEDEFAGDVEKIYRILRNYHSRVPKLELS 90

Query: 50  LATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQ 108
           L      L    ++ VL RC  +   +G RFF+WA  Q  Y HS  +     + +S+++Q
Sbjct: 91  LNESGIDLRPGLIVRVLSRCGDA-GNLGYRFFLWATKQPGYCHSYEVCKSMVKILSKMRQ 149

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
             ++   + E  KE   ++  ++  V+      A +  +A+ VL +MP++   PD  ++ 
Sbjct: 150 FGAVWGLIEEMRKENPELIEPELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFG 209

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            ++   C+ G +  A ++ + M    + P++  + S++ G+C  G+L +A  +   MK  
Sbjct: 210 CLLDALCKNGSVKDASKVFEDMRE-KIPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEA 268

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC-GKGMM 287
           G   ++V ++ LL G    G M  A +LL +M K G +  PN   YT +IQ  C  +  M
Sbjct: 269 GLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGYE--PNANCYTVLIQALCRTEKRM 326

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            EA+ +   ME  GC  + VT + LI GFC  G +D+ Y ++D +   G + S   Y  +
Sbjct: 327 DEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQI 386

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +V   + ++ +E  +L  KM   G  PD L  +V+IR  C   +V E   L+ ++E  G 
Sbjct: 387 LVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLACNFREVKEAVRLWNEMEANGL 446

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
             S  +D+  +++ G   + + +EA    + M+ + I+    Y
Sbjct: 447 --SPGADMFVIMINGFTSQGYLIEACSHFKEMVSRGIFSAPQY 487



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 105/240 (43%), Gaps = 8/240 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+   I +  S++ D+    +++G + S      I    EK     E + ++ KM +   
Sbjct: 356 CKWGMIDKGYSVLDDM----RKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGC 411

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD +IYN VIRL C   ++  A  L   M    L P    +V MI GF + G L +AC 
Sbjct: 412 HPDLLIYNVVIRLACNFREVKEAVRLWNEMEANGLSPGADMFVIMINGFTSQGYLIEACS 471

Query: 221 LFKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
            FK M   G   A       +LL+ + R   +E A ++   +  +   C  NV  +T  I
Sbjct: 472 HFKEMVSRGIFSAPQYGTLKSLLNTLLRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWI 531

Query: 279 QIFCGKGMMKEALGI-LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
                KG +KEA    LD ME +   P   T   L+KG     N   A ++ +KV+   S
Sbjct: 532 HALFAKGHVKEACSYCLDMME-MDLMPQPNTYVKLMKGLNKLYNRTIAAEITEKVMKMAS 590


>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g65820
 gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 218/445 (48%), Gaps = 16/445 (3%)

Query: 11  SSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEK---TLATVKAKLDSTCVIEVLH 67
           S +   KNSK    +   AS  E+ Y  L+K  + + K    L     +L    +  VL+
Sbjct: 66  SHNDRTKNSK----YDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLN 121

Query: 68  RCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCV 126
           RC      +G RFF+WAA Q  Y HS  +Y    + +S+++Q  ++   + E  KE   +
Sbjct: 122 RC-GDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQL 180

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           +  ++  V+      A +  +A+ VL +MP+F   PD  ++  ++   C+ G +  A +L
Sbjct: 181 IEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKL 240

Query: 187 MKGMGLIDLYP-DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
            + M +   +P ++  + S++ G+C  G++ +A  +   M   G   ++V Y+ LL G  
Sbjct: 241 FEDMRM--RFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYA 298

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
             G M  A +LL +M + G +  PN   YT +IQ  C    M+EA+ +   ME   C  +
Sbjct: 299 NAGKMADAYDLLRDMRRRGFE--PNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEAD 356

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            VT + L+ GFC  G +D+ Y ++D ++  G + S   Y  ++V   + +  +E  +L  
Sbjct: 357 VVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELME 416

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           KM      PD    +V+IR  C  G+V E   L+ ++E+ G    VD+ +  +++ GL  
Sbjct: 417 KMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFV--IMINGLAS 474

Query: 426 KNHSVEAAKLARFMLKKRIWLQGPY 450
           +   +EA+   + M+ + ++    Y
Sbjct: 475 QGCLLEASDHFKEMVTRGLFSVSQY 499



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 3/195 (1%)

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
           EK     E + ++ KM + +  PD  IYN VIRL C+ G++  A  L   M    L P +
Sbjct: 403 EKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGV 462

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHG--CAANLVAYSALLDGICRLGSMERALELL 257
            T+V MI G  + G L +A   FK M   G    +       LL+ + +   +E A ++ 
Sbjct: 463 DTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAKDVW 522

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             +  +G  C  NV+++T  I     KG  KEA      M  +   P   T + L+KG  
Sbjct: 523 SCITSKGA-CELNVLSWTIWIHALFSKGYEKEACSYCIEMIEMDFMPQPDTFAKLMKGLK 581

Query: 318 VEGNLDEAYQLIDKV 332
              N + A ++ +KV
Sbjct: 582 KLYNREFAGEITEKV 596


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 176/348 (50%), Gaps = 10/348 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRK 154
           + N  C+   +K      I++++   +EG    V     VI  LC+   +  EA+ VL +
Sbjct: 301 LVNGLCKAGHVKH----AIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEV-KEAVEVLDQ 355

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M   D  P+T+ YN +I   C++  +  A EL + +    + PD+ T+ S+I+G C    
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
              A  LF+ M+  GC  +   Y+ L+D +C  G ++ AL +L +ME  G  C+ +V+TY
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARSVITY 473

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            ++I  FC     +EA  I D ME  G + N VT +TLI G C    +++A QL+D+++ 
Sbjct: 474 NTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 533

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y+SL+    R   +K+A  +   M ++G +PD +    +I  LC  G+V  
Sbjct: 534 EGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEV 593

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              L   I+  G   ++    ++ ++ GL RK  + EA  L R ML++
Sbjct: 594 ASKLLRSIQMKGI--NLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQ 639



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 168/327 (51%), Gaps = 9/327 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC KA     A+ ++  M +    PD   YN+VI   C+ G++  A E++  M   
Sbjct: 301 LVNGLC-KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITR 359

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           D  P+ +TY ++I   C   ++E+A  L +V+   G   ++  +++L+ G+C   +   A
Sbjct: 360 DCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVA 419

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +EL  EM  +G  C P+  TY  +I   C KG + EAL +L +ME  GCA + +T +TLI
Sbjct: 420 MELFEEMRSKG--CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC      EA ++ D++   G   +   Y++L+  L +++R+++A +L  +M+  G K
Sbjct: 478 DGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK 537

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVE 431
           PD    + ++   C GG + +      DI +    +  + DI  +  L+ GLC+      
Sbjct: 538 PDKYTYNSLLTHFCRGGDIKKA----ADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEV 593

Query: 432 AAKLARFMLKKRIWLQGPYVDKIVEHL 458
           A+KL R +  K I L     + +++ L
Sbjct: 594 ASKLLRSIQMKGINLTPHAYNPVIQGL 620



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 146/292 (50%), Gaps = 16/292 (5%)

Query: 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           A E++R+  +  I+ DV        C  +     +I  LC   R    AM +  +M    
Sbjct: 384 ATELARVLTSKGILPDV--------CTFN----SLIQGLC-LTRNHRVAMELFEEMRSKG 430

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             PD   YN +I   C KG +  A  ++K M L      +ITY ++I GFC A +  +A 
Sbjct: 431 CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAE 490

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +F  M+ HG + N V Y+ L+DG+C+   +E A +L+ +M  EG    P+  TY S++ 
Sbjct: 491 EIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQ--KPDKYTYNSLLT 548

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            FC  G +K+A  I+  M + GC P+ VT  TLI G C  G ++ A +L+  +   G   
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINL 608

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASG-VKPDGLACSVMIRELCLGG 390
           +   Y+ ++  L R ++  EA  LF +ML      PD ++  ++ R LC GG
Sbjct: 609 TPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGG 660



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 152/316 (48%), Gaps = 36/316 (11%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           KM  + ++PD   +N +I+  C    +  A  +++ M    L PD  T+ ++++G+   G
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG 238

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG-------- 265
            L+ A  + + M   GC+ + V+ + ++ G C+ G +E AL  + EM  + G        
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298

Query: 266 --------------------------DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
                                        P+V TY SVI   C  G +KEA+ +LD+M  
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
             C+PN VT +TLI   C E  ++EA +L   + + G +     ++SL+  L  T+  + 
Sbjct: 359 RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV 418

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A +LF +M + G +PD    +++I  LC  G++ E   + + +E  G   SV +  ++ L
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVIT--YNTL 476

Query: 420 LLGLCRKNHSVEAAKL 435
           + G C+ N + EA ++
Sbjct: 477 IDGFCKANKTREAEEI 492



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 7/226 (3%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC  SV     + +   KA    EA  +  +M    +  +++ YN +I   C+   +  A
Sbjct: 465 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDA 524

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            +LM  M +    PD  TY S++  FC  G ++ A  + + M  +GC  ++V Y  L+ G
Sbjct: 525 AQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 584

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM-EALGC 302
           +C+ G +E A +LL  ++ +G + +P+   Y  VIQ    K    EA+ +   M E    
Sbjct: 585 LCKAGRVEVASKLLRSIQMKGINLTPHA--YNPVIQGLFRKRKTTEAINLFREMLEQNEA 642

Query: 303 APNRVTISTLIKGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSL 347
            P+ V+   + +G C  G  + EA   + +++  G V     +SSL
Sbjct: 643 PPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPE---FSSL 685


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 168/311 (54%), Gaps = 4/311 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L+PD + Y  +I ++C+ G+M+ A  L   M  + + P+I+TY ++I G C  G L+ A 
Sbjct: 429 LKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTAN 488

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M++ G   N+  Y+++++GIC+ G++E+A++L+ EME  G D  P+ +TYT+VI 
Sbjct: 489 ELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGID--PDAITYTTVID 546

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +C  G + +A  +L  M   G  P  VT + L+ GFC+ G L++  +L+  ++  G V 
Sbjct: 547 AYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVP 606

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y++L+ +      +    K++ +M   GV PD    +++I+  C    + E + LY
Sbjct: 607 DAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLY 666

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459
           +++ + G++ +V S  ++ L+    +K    EA +L   M    +   G   +  V+   
Sbjct: 667 KEMIEKGYVPTVTS--YNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCY 724

Query: 460 KSGDEELITNL 470
           + GD E+  NL
Sbjct: 725 EEGDVEITLNL 735



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 166/317 (52%), Gaps = 8/317 (2%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           VV   ++   F L    R AN+  W   +M    + PD I Y  +I+ F + G +I    
Sbjct: 364 VVYTTLIHGFFKLGH-VRTANK--W-FDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQN 419

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L   M    L PD +TY ++I  +C AG + +A  L   M + G   N+V Y AL+DG+C
Sbjct: 420 LFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLC 479

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G ++ A ELL EM K+G     NV  Y S++   C  G +++A+ ++  ME  G  P+
Sbjct: 480 KHGELDTANELLDEMRKKG--LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPD 537

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            +T +T+I  +C  G++D+A++L+ +++  G   +   ++ L+        L++ ++L  
Sbjct: 538 AITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLG 597

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            ML  G+ PD +  + ++++ C+   +     +Y+ +   G   + DS+ +++L+ G C+
Sbjct: 598 WMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGV--APDSNTYNILIKGHCK 655

Query: 426 KNHSVEAAKLARFMLKK 442
             +  EA  L + M++K
Sbjct: 656 ARNLKEAWFLYKEMIEK 672



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 147/293 (50%), Gaps = 6/293 (2%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C+   + N A  +  +M +  + P+ + Y  +I   C+ G++  A+EL+  M    L  +
Sbjct: 444 CKAGEMVN-AFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLN 502

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           +  Y SM+ G C AG +E A  L K M+  G   + + Y+ ++D  CRLG +++A +LL 
Sbjct: 503 VCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM   G    P VVT+  ++  FC  GM+++   +L  M   G  P+ +T +TL+K  C+
Sbjct: 563 EMLDRG--LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCI 620

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
             +++   ++  ++   G       Y+ L+    + + LKEA  L+ +M+  G  P   +
Sbjct: 621 RNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTS 680

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
            + +I+      +  E   L+E++   G ++  D +I++   + +C +   VE
Sbjct: 681 YNALIKRFYKKRKFXEARELFEEMRGHGLVA--DGEIYN-FFVDMCYEEGDVE 730



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 169/376 (44%), Gaps = 37/376 (9%)

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI-FNLCEKARLANEAMWVLRKMPEFDLR 161
           +SRI  N   I   ++ + E G   +     +I ++LC   ++  EA  +L +M      
Sbjct: 232 LSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKV-KEAHRLLMQMDFRSST 290

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + Y+ VI  +C  G++  A +LM  M +  L P+  TY S+I   C  G+  +A  +
Sbjct: 291 PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKV 350

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK------------------E 263
            + M       + V Y+ L+ G  +LG +  A +   EM                    +
Sbjct: 351 LREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQ 410

Query: 264 GGDC---------------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           GG                  P+ VTYT++I ++C  G M  A  + + M  +G  PN VT
Sbjct: 411 GGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVT 470

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
              LI G C  G LD A +L+D++   G   +   Y+S+V  + +   +++A KL  +M 
Sbjct: 471 YGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEME 530

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
            +G+ PD +  + +I   C  G + +   L +++   G   +V +   +VL+ G C    
Sbjct: 531 VAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVT--FNVLMNGFCMLGM 588

Query: 429 SVEAAKLARFMLKKRI 444
             +  +L  +ML+K I
Sbjct: 589 LEDGDRLLGWMLEKGI 604



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 150/302 (49%), Gaps = 20/302 (6%)

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I++FCE G                +  +  +Y  +I   C  G++++A  L   M     
Sbjct: 246 IKVFCEYG----------------ISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSS 289

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             ++V+YS ++DG C LG +++AL+L+ +M+ +G    PN  TY S+I + C  G   EA
Sbjct: 290 TPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKG--LKPNRYTYNSIILLLCKIGKSFEA 347

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             +L  M +    P+ V  +TLI GF   G++  A +  D++++         Y++L+  
Sbjct: 348 EKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQG 407

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             +  ++ E + LF +M++ G+KPD +  + +I   C  G+++  F L+ ++ ++G   +
Sbjct: 408 FGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPN 467

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           + +  +  L+ GLC+      A +L   M KK + L     + +V  + K+G+ E    L
Sbjct: 468 IVT--YGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKL 525

Query: 471 PK 472
            K
Sbjct: 526 MK 527



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 162/337 (48%), Gaps = 25/337 (7%)

Query: 154 KMPEFDLR---------PDTIIYNNVIRLFCEKGDMIAADELMKGM---GLIDLYPDIIT 201
           KM +F  R         P+ I ++   ++  E G +  A +L+  +   GL+        
Sbjct: 171 KMTQFTHRLIYTYKYWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNA 230

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           ++S I    N+  +E A    KV   +G + N  +Y+ ++  +CRLG ++ A  LL +M+
Sbjct: 231 FLSRIAN--NSEGIEMA---IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMD 285

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
                 +P+VV+Y++VI  +C  G +K+AL ++D M+  G  PNR T +++I   C  G 
Sbjct: 286 FRSS--TPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
             EA +++ ++++   +     Y++L+    +   ++ A K F +ML+  + PD +  + 
Sbjct: 344 SFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTT 403

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +I+    GG+V+E   L+ ++   G     D   ++ L+   C+    V A  L   M++
Sbjct: 404 LIQGFGQGGKVIEPQNLFHEMISRGL--KPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQ 461

Query: 442 ----KRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
                 I   G  +D + +H +     EL+  + K G
Sbjct: 462 MGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKG 498



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 2/234 (0%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++++  +++G  ++V +   + N   KA    +A+ ++++M    + PD I Y  VI  +
Sbjct: 489 ELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAY 548

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C  GD+  A +L++ M    L P ++T+  ++ GFC  G LED   L   M   G   + 
Sbjct: 549 CRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDA 608

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + Y+ L+   C   SM    ++   M  +G   +P+  TY  +I+  C    +KEA  + 
Sbjct: 609 ITYNTLMKQHCIRNSMNTTTKIYKRMRNQG--VAPDSNTYNILIKGHCKARNLKEAWFLY 666

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             M   G  P   + + LIK F  +    EA +L +++   G V+ G  Y+  V
Sbjct: 667 KEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFV 720



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N    + ++M    + PD+  YN +I+  C+  ++  A  L K M      P + +Y ++
Sbjct: 625 NTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNAL 684

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           IK F    +  +A  LF+ M+ HG  A+   Y+  +D     G +E  L L  E
Sbjct: 685 IKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDE 738


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 158/315 (50%), Gaps = 35/315 (11%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M   D+ PD + Y  +I  FC+ GDM+ A +L   M    L PD +T+  +I G+C AG
Sbjct: 376 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 435

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK----------- 262
            ++DA  +   M + GC+ N+V Y+ L+DG+C+ G ++ A ELL EM K           
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 495

Query: 263 ----------------------EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
                                 E    + + VTYT+++  +C  G M +A  IL  M   
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 555

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P  VT + L+ GFC+ G L++  +L++ ++A G   +   ++SLV +      LK A
Sbjct: 556 GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 615

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             ++  M + GV PDG     +++  C    + E + L+++++  GF  SV +  +SVL+
Sbjct: 616 TAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST--YSVLI 673

Query: 421 LGLCRKNHSVEAAKL 435
            G  ++   +EA ++
Sbjct: 674 KGFLKRKKFLEAREV 688



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 144/258 (55%), Gaps = 3/258 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   +LA EA     +M    + PDT++Y  +I  FC++GD+ AA +    M   D+ P
Sbjct: 326 LCRICKLA-EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITP 384

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D++TY ++I GFC  G + +A  LF  M   G   + V ++ L++G C+ G M+ A  + 
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 444

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M + G  CSPNVVTYT++I   C +G +  A  +L  M  +G  PN  T ++++ G C
Sbjct: 445 NHMIQAG--CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 502

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             GN++EA +L+ +  A G  +    Y++L+    ++  + +A+++  +ML  G++P  +
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 562

Query: 378 ACSVMIRELCLGGQVLEG 395
             +V++   CL G + +G
Sbjct: 563 TFNVLMNGFCLHGMLEDG 580



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 3/279 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           SV   ++I   C KA    +A  V   M +    P+ + Y  +I   C++GD+ +A+EL+
Sbjct: 421 SVTFTELINGYC-KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 479

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M  I L P+I TY S++ G C +G +E+A  L    +  G  A+ V Y+ L+D  C+ 
Sbjct: 480 HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 539

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G M++A E+L EM  +G    P +VT+  ++  FC  GM+++   +L+ M A G APN  
Sbjct: 540 GEMDKAQEILKEMLGKG--LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNAT 597

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T ++L+K +C+  NL  A  +   + + G    G  Y +LV    + + +KEA  LF +M
Sbjct: 598 TFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEM 657

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
              G        SV+I+      + LE   +++ + + G
Sbjct: 658 KGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 161/363 (44%), Gaps = 40/363 (11%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           V E     G V+SV    V    L +       A+ V R+ PE  +  +   YN VI   
Sbjct: 197 VFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFV 256

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN- 233
           C+ G +  A  L+  M L    PD+I+Y +++ G+C  G L+    L +VMKR G   N 
Sbjct: 257 CQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNS 316

Query: 234 ----------------------------------LVAYSALLDGICRLGSMERALELLGE 259
                                              V Y+ L+DG C+ G +  A +   E
Sbjct: 317 YIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYE 376

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M     D +P+V+TYT++I  FC  G M EA  +   M   G  P+ VT + LI G+C  
Sbjct: 377 MHSR--DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA 434

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G++ +A+++ + ++  G   +   Y++L+  L +   L  A +L  +M   G++P+    
Sbjct: 435 GHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTY 494

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + ++  LC  G + E   L  + E  G   + D+  ++ L+   C+     +A ++ + M
Sbjct: 495 NSIVNGLCKSGNIEEAVKLVGEFEAAGL--NADTVTYTTLMDAYCKSGEMDKAQEILKEM 552

Query: 440 LKK 442
           L K
Sbjct: 553 LGK 555



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 130/257 (50%), Gaps = 8/257 (3%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARL--ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
           + GC  +V     + + LC++  L  ANE   +L +M +  L+P+   YN+++   C+ G
Sbjct: 449 QAGCSPNVVTYTTLIDGLCKEGDLDSANE---LLHEMWKIGLQPNIFTYNSIVNGLCKSG 505

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
           ++  A +L+       L  D +TY +++  +C +G ++ A  + K M   G    +V ++
Sbjct: 506 NIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 565

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            L++G C  G +E   +LL  M  +G   +PN  T+ S+++ +C +  +K A  I   M 
Sbjct: 566 VLMNGFCLHGMLEDGEKLLNWMLAKG--IAPNATTFNSLVKQYCIRNNLKAATAIYKDMC 623

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           + G  P+  T   L+KG C   N+ EA+ L  ++   G   S   YS L+   ++ K+  
Sbjct: 624 SRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 683

Query: 359 EAEKLFSKMLASGVKPD 375
           EA ++F +M   G+  D
Sbjct: 684 EAREVFDQMRREGLAAD 700



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 128/285 (44%), Gaps = 8/285 (2%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI-----DLYPDIITYVSMIKGFCNAGRLED 217
           D  +  ++I  F E+  +   D  ++   L+     D   D   +    +   + G L +
Sbjct: 134 DLKVAQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLRE 193

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  +F+ M  +G   ++ + +  L  + +         ++     E G C  NV +Y  V
Sbjct: 194 ARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCW-NVASYNIV 252

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I   C  G +KEA  +L  ME  G  P+ ++ ST++ G+C  G LD+ ++LI+ +   G 
Sbjct: 253 IHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGL 312

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
             +   Y S++  L R  +L EAE+ FS+M+  G+ PD +  + +I   C  G +     
Sbjct: 313 KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK 372

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            + ++        V +  ++ ++ G C+    VEA KL   M  K
Sbjct: 373 FFYEMHSRDITPDVLT--YTAIISGFCQIGDMVEAGKLFHEMFCK 415



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 2/161 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A  +L++M    L+P  + +N ++  FC  G +   ++L+  M    + P+  T+ S+
Sbjct: 543 DKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSL 602

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +K +C    L+ A  ++K M   G   +   Y  L+ G C+  +M+ A  L  EM+ +G 
Sbjct: 603 VKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG- 661

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
             S +V TY+ +I+ F  +    EA  + D+M   G A ++
Sbjct: 662 -FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADK 701


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 158/294 (53%), Gaps = 4/294 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ VLR M      P+ + YN ++  FC  G++  A+ L+  M    L P+++T+ S++
Sbjct: 175 EALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVV 234

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C AGR+EDA  +F  M + G A + V+Y+ L+ G C++G    AL +  EM ++G  
Sbjct: 235 NGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKG-- 292

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+VVT+TS+I + C  G ++ A+G++  M   G   N +T + LI GFC +G LD+A 
Sbjct: 293 IMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDAL 352

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
             + ++       S  CY++L+       R+ EA +L  +M A GVKPD +  S ++   
Sbjct: 353 LAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAY 412

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           C  G     F L + + + G L   D+  +S L+  LC +    +A  L + M+
Sbjct: 413 CKNGDTHSAFQLNQQMLENGVLP--DAITYSSLIRVLCEEKRLGDAHVLFKNMI 464



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 164/309 (53%), Gaps = 9/309 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    V+  +C+  R+  +A  V  +M +  L PD + YN ++  +C+ G    A  +  
Sbjct: 228 VTFNSVVNGICKAGRM-EDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFA 286

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD++T+ S+I   C AG LE A GL + M+  G   N + ++AL+DG C+ G
Sbjct: 287 EMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKG 346

Query: 249 SMERALELLGEMEKEGGDC--SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            ++ AL  + EM +    C   P+VV Y ++I  +C  G M EA  ++  MEA G  P+ 
Sbjct: 347 FLDDALLAVREMRQ----CRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDV 402

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT ST++  +C  G+   A+QL  +++  G +     YSSL+  L   KRL +A  LF  
Sbjct: 403 VTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKN 462

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M++ G++PD +  + +I   C  G V     L++++ K G L  V +  +SVL+ GL + 
Sbjct: 463 MISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVT--YSVLINGLSKS 520

Query: 427 NHSVEAAKL 435
             + EA +L
Sbjct: 521 ARTKEAQRL 529



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 170/328 (51%), Gaps = 20/328 (6%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  +C+   L   A+ ++R+M E  L+ + I +  +I  FC+KG +  A   ++
Sbjct: 298 VTFTSLIHVMCKAGNL-ERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVR 356

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P ++ Y ++I G+C  GR+++A  L + M+  G   ++V YS +L   C+ G
Sbjct: 357 EMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNG 416

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A +L  +M + G    P+ +TY+S+I++ C +  + +A  +   M +LG  P+ VT
Sbjct: 417 DTHSAFQLNQQMLENG--VLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVT 474

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            ++LI G C EGN++ A  L D++V  G +     YS L+  L ++ R KEA++L  K+ 
Sbjct: 475 YTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLY 534

Query: 369 ASGVKPDGLACSVMIR-----ELCLGGQVLEGFCL----------YEDIEKIGFLSSVDS 413
                P  +    ++R     EL     +L+GFC+          Y+ I    +  ++D 
Sbjct: 535 HEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNW--NLDG 592

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            ++SVL+ G CR+ + ++A    + ML+
Sbjct: 593 SVYSVLIHGHCREGNVMKALSFHKQMLQ 620



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 23/345 (6%)

Query: 114 IDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + +V   +E G  ++ +    +I   C+K  L ++A+  +R+M +  ++P  + YN +I 
Sbjct: 317 VGLVREMRERGLQMNEITFTALIDGFCKKGFL-DDALLAVREMRQCRIQPSVVCYNALIN 375

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            +C  G M  A EL++ M    + PD++TY +++  +C  G    A  L + M  +G   
Sbjct: 376 GYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLP 435

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           + + YS+L+  +C    +  A  L   M   G    P+ VTYTS+I   C +G ++ AL 
Sbjct: 436 DAITYSSLIRVLCEEKRLGDAHVLFKNMISLG--LQPDEVTYTSLIDGHCKEGNVERALS 493

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D M   G  P+ VT S LI G        EA +L+ K+     V +   Y +L +   
Sbjct: 494 LHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDAL-MRCC 552

Query: 353 RTKRLK----------------EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
           R   LK                EA+K++  +L      DG   SV+I   C  G V++  
Sbjct: 553 RNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKAL 612

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
             ++ + + GF  +  S I   L+ GL  K   VEA ++ + +L 
Sbjct: 613 SFHKQMLQCGFAPNSTSTIS--LIRGLFEKGMVVEADQVIQQLLN 655



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 5/302 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + YN V+ L      + +A      M    + P++ TY  +++  C  G  ++A  +
Sbjct: 121 PSVLAYNAVL-LALSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSV 179

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M+  GC  N V Y+ L+   CR G ++RA E L +M +EGG   PN+VT+ SV+   
Sbjct: 180 LRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRA-ERLVDMMREGG-LKPNLVTFNSVVNGI 237

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G M++A  + D M   G AP+ V+ +TL+ G+C  G   EA  +  ++   G +   
Sbjct: 238 CKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDV 297

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             ++SL+  + +   L+ A  L  +M   G++ + +  + +I   C  G + +      +
Sbjct: 298 VTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVRE 357

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
           + +     SV    ++ L+ G C      EA +L R M  K +         I+    K+
Sbjct: 358 MRQCRIQPSVVC--YNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKN 415

Query: 462 GD 463
           GD
Sbjct: 416 GD 417



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 126/242 (52%), Gaps = 7/242 (2%)

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G A +++AY+A+L  +    S+  A      M  +G   +PNV TY  +++  CG+G  K
Sbjct: 118 GYAPSVLAYNAVLLALSD-ASLPSARRFFDSMLSDG--VAPNVYTYNILVRALCGRGHRK 174

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           EAL +L  M   GC PN VT +TL+  FC  G +D A +L+D +  GG   +   ++S+V
Sbjct: 175 EALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVV 234

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             + +  R+++A K+F +M+  G+ PDG++ + ++   C  G   E   ++ ++ + G +
Sbjct: 235 NGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIM 294

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG--DEEL 466
             V +   + L+  +C+  +   A  L R M ++ + +       +++   K G  D+ L
Sbjct: 295 PDVVT--FTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDAL 352

Query: 467 IT 468
           + 
Sbjct: 353 LA 354



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 149/344 (43%), Gaps = 31/344 (9%)

Query: 52  TVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPS 111
           T  A +D  C      + F   + + +R      +Q S    + + N  C + R+ +   
Sbjct: 334 TFTALIDGFC-----KKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDE--- 385

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
              ++V   + +G    V     I +   K    + A  + ++M E  + PD I Y+++I
Sbjct: 386 -ARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLI 444

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           R+ CE+  +  A  L K M  + L PD +TY S+I G C  G +E A  L   M + G  
Sbjct: 445 RVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVL 504

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            ++V YS L++G+ +    + A  LL ++  E  +  P  + Y ++++  C    +K  L
Sbjct: 505 PDVVTYSVLINGLSKSARTKEAQRLLFKLYHE--EPVPANIKYDALMRC-CRNAELKSVL 561

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
                               L+KGFC++G ++EA ++   ++       G  YS L+   
Sbjct: 562 A-------------------LLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGH 602

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
            R   + +A     +ML  G  P+  +   +IR L   G V+E 
Sbjct: 603 CREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEA 646



 Score = 38.9 bits (89), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 62/126 (49%)

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           L NEA  V + + + +   D  +Y+ +I   C +G+++ A    K M      P+  + +
Sbjct: 572 LMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTI 631

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S+I+G    G + +A  + + +      A+  A  AL+D   + G+++  L++L  M ++
Sbjct: 632 SLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARD 691

Query: 264 GGDCSP 269
           G   SP
Sbjct: 692 GLLPSP 697


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 163/325 (50%), Gaps = 7/325 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V++    + CV +     ++ N   KA     A  + R M     RP+++IY ++I  
Sbjct: 280 LKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHG 339

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           F + G M  A  L   M      PD+IT+  MI G C +G  E A   F+ M R GC  N
Sbjct: 340 FAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPN 399

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V Y+ ++ G+ ++G +  A  ++  M   G  C P+ VTY  ++  FC  G + EA  +
Sbjct: 400 VVTYTTIIQGLSKIGRVANAFRIMKGMIAHG--CFPDSVTYICLLDGFCKLGRLDEAAQL 457

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY-QLIDKVVAGGSVSSGGCYSSLVVELV 352
           LD ++    +PN    S+L+ G C  G++++    L ++  A       G   S++V L 
Sbjct: 458 LDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLC 517

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--GQVLEGFCLYEDIEKIGFLSS 410
           +T RL EA ++F +M++ G KPD    +++I  LC     +V   F L  D+EK+G+L  
Sbjct: 518 KTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLP- 576

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKL 435
            D+  ++ L +GLC+      A K+
Sbjct: 577 -DAVTYTPLCIGLCKIGEVDRAVKM 600



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 179/417 (42%), Gaps = 42/417 (10%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM 103
           +NI   L  V  ++  + V  VL       +   I FF WA  Q+ ++H  F YN    +
Sbjct: 71  HNIRNVLGPVHGQVLGSHVAAVLRSL--KVTGTAISFFRWAGEQAGFQHDVFTYNCLMNL 128

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
              ++N S    + E   + G   +     ++     + R A++A+     M     +PD
Sbjct: 129 LVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPD 188

Query: 164 TIIYNNVIRLFCEKG----------DMIA--------------------------ADELM 187
              +  ++   C+ G          +M+A                          A E+ 
Sbjct: 189 LHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVF 248

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M      PD I Y +MI G   AG  ++A  +   M    C    V Y  L++ +C+ 
Sbjct: 249 GQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKA 308

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G++ERA EL   M   G    PN V YTS+I  F   G MKEA  + D M   G  P+ +
Sbjct: 309 GTLERAEELFRVMAASG--FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVI 366

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + +I G C  GN ++A +  ++++ GG   +   Y++++  L +  R+  A ++   M
Sbjct: 367 THTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGM 426

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           +A G  PD +    ++   C  G++ E   L ++++K    SS +  ++S L+ GLC
Sbjct: 427 IAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCS--SSPNLQLYSSLVNGLC 481



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 167/353 (47%), Gaps = 22/353 (6%)

Query: 104 SRIKQNPSIIIDVVEAYK------EEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           + I Q  S I  V  A++        GC   SV  + ++   C+  RL +EA  +L ++ 
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRL-DEAAQLLDELD 462

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAA-DELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
           +    P+  +Y++++   C+ G +    D+L +         D     S+I G C  GRL
Sbjct: 463 KCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRL 522

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRL--GSMERALELLGEMEKEGGDCSPNVVT 273
           ++AC +F+ M   GC  +   Y+ L++G+CR     +ERA  LL ++EK G    P+ VT
Sbjct: 523 DEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVG--YLPDAVT 580

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YT +    C  G +  A+ +L+   + G   + V  + L  G C +G +D A  L  ++V
Sbjct: 581 YTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMV 640

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G       Y  ++  L++ K+L++A K F +M+  G KP     + +++ LC  G V 
Sbjct: 641 RQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVD 700

Query: 394 EGFCLYEDI----EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           E F  +E +    E +G +   D+ IH     G C+      A KL   M+ +
Sbjct: 701 EAFHRFESMLARGELVGSVMIYDALIH-----GFCKALKVDAALKLFEDMISR 748



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 162/343 (47%), Gaps = 17/343 (4%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP--------------EF 158
           I++ ++  + +G   SV  ++ +        L +    VLR +               + 
Sbjct: 54  IVETIKDVRLDGSSWSVHNIRNVLGPVHGQVLGSHVAAVLRSLKVTGTAISFFRWAGEQA 113

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
             + D   YN ++ L   + +      + + M    + P+  ++  +I+ F    R +DA
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
              F++MKR  C  +L  +  L+D +C+ G  E+A E+  EM   G    P+   +T+++
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGF-VPPDRALHTAMV 232

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
           +       +KEA  +  +ME  G  P+ +  +T+I G    G+  EA +++D ++A   V
Sbjct: 233 RTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACV 292

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y  LV  L +   L+ AE+LF  M ASG +P+ +  + +I      G++ E   L
Sbjct: 293 PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSL 352

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           ++++ + G+   V +  H+V++ GLC+  +  +AAK    M++
Sbjct: 353 FDEMVEAGYRPDVIT--HTVMIDGLCKSGNFEQAAKSFEEMMR 393



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 128/277 (46%), Gaps = 37/277 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD--MIAADELMKGMG 191
           +I  LC+  RL +EA  + ++M     +PD   YN +I   C   +  +  A  L+  + 
Sbjct: 512 IIVGLCKTGRL-DEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
            +   PD +TY  +  G C  G ++ A  + +     G  A++VAY+AL  G+C  G ++
Sbjct: 571 KVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630

Query: 252 RALELLGEMEKEGG--DCS-------------------------------PNVVTYTSVI 278
           RA+ L  EM ++GG  D +                               P V TYT+++
Sbjct: 631 RAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALV 690

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTI-STLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           Q  C  G + EA    + M A G     V I   LI GFC    +D A +L + +++ G+
Sbjct: 691 QALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGN 750

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           V +    +SL   LVR+ + ++A++L  +M A G  P
Sbjct: 751 VPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPP 787



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +P    Y  +++  C  G++  A    + M    +L   ++ Y ++I GFC A +++ A 
Sbjct: 680 KPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAAL 739

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
            LF+ M   G     V  ++L DG+ R G  E+A ELL EM    G   P+  T+T+++
Sbjct: 740 KLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEM--AAGGSPPHAATFTAIL 796



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 1/168 (0%)

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           E  G   +  T + L+     E N  + Y + ++++  G   +   ++ L+    RT+R 
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
            +A   F  M     KPD     +++  LC  G   + F ++ ++  +GF+   D  +H+
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPP-DRALHT 229

Query: 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            ++  L +     EA ++   M K          + +++ L K+G  +
Sbjct: 230 AMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQ 277



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           +IY+ +I  FC+   + AA +L + M      P  +T  S+  G   +G+ E A  L + 
Sbjct: 720 MIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQE 779

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           M   G   +   ++A+LDG+ +     + L+L+ E
Sbjct: 780 MAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 224/455 (49%), Gaps = 19/455 (4%)

Query: 3   RFSLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCV 62
           +F   R+   S+N  + +    H   AS  E+ Y  L+K  + + K    ++   +S  V
Sbjct: 40  QFGFIRLQEISINHTDDQT---HDEFASDVEKVYRILRKYHSRVPKLELALR---ESGVV 93

Query: 63  IE------VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQNPSIIID 115
           +       VL+RC  +   +  RF+ WA+ QS +R     Y    + +SR++Q  ++   
Sbjct: 94  VRPGLTERVLNRCGDA-GNLAYRFYSWASKQSGHRLDHDAYKAMIKVLSRMRQFGAVWAL 152

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  +E   +++ ++  ++      AR+ ++A+ VL +MP +   PD  ++  ++    
Sbjct: 153 IEEMRQENPHLITPQVFVILMRRFASARMVHKAVQVLDEMPNYGCEPDEYVFGCLLDALR 212

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A  L + +      P +  + S++ G+C  G+L +A  +   MK  G   ++V
Sbjct: 213 KNGSVKEAASLFEEL-RYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIV 271

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ LL G  +   M  A +LL EM ++G  C PN  +YT +IQ  C    ++EA  +  
Sbjct: 272 VYNNLLGGYAQADKMGDAYDLLKEMRRKG--CEPNATSYTVLIQSLCKHERLEEATRVFV 329

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+  GC  + VT STLI GFC  G +   Y+L+D+++  G   +   Y  ++V   + +
Sbjct: 330 EMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKE 389

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            L+E ++L ++M   G  PD    + +IR  C  G+V EG  L+ ++E  G   S+D+ +
Sbjct: 390 ELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFV 449

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
             +++ G   +   VEA +  + M+ + ++    Y
Sbjct: 450 --IMINGFLEQGCLVEACEYFKEMVGRGLFAAPQY 482



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 75/173 (43%), Gaps = 3/173 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD  IYN VIRL C+ G++     L   M    L P I T+V MI GF   G L +AC  
Sbjct: 408 PDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEY 467

Query: 222 FKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           FK M   G   A        L++ + R   +E A +    +    G C  NV  +T  I 
Sbjct: 468 FKEMVGRGLFAAPQYGTLKELMNSLLRAEKLEMAKDAWNCITASKG-CQLNVSAWTIWIH 526

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
               KG +KEA      M      P   T + L++G     N + A ++ +KV
Sbjct: 527 ALFSKGHVKEACSFCIAMMDKDLMPQPDTFAKLMRGLKKLYNREFAAEITEKV 579



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 50/237 (21%)

Query: 115 DVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           D+++  + +GC  +     V I +LC+  RL  EA  V  +M     + D + Y+ +I  
Sbjct: 291 DLLKEMRRKGCEPNATSYTVLIQSLCKHERL-EEATRVFVEMQRNGCQADLVTYSTLISG 349

Query: 174 FCEKGDMIAADELM-----------------------------------KGMGLIDLYPD 198
           FC+ G +    EL+                                     M  I   PD
Sbjct: 350 FCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPD 409

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           +  Y ++I+  C  G +++   L+  M+  G + ++  +  +++G    G +  A E   
Sbjct: 410 LSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEYFK 469

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           EM   G   +P               G +KE +  L R E L  A +     T  KG
Sbjct: 470 EMVGRGLFAAPQY-------------GTLKELMNSLLRAEKLEMAKDAWNCITASKG 513


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 195/421 (46%), Gaps = 31/421 (7%)

Query: 50  LATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRH--SSF--MYNRACEMSR 105
           L  +  KL    V+ +L     + S +  RFF W + +  ++H  S F  M NR      
Sbjct: 69  LCHLSPKLKPHHVVNILQTHKNTDSVL--RFFFWISRRKFFKHDMSCFVSMLNRLVRDRL 126

Query: 106 IKQNPSIIIDVVEAYKEEGCVVSVKMM--------KVIFNLCE---------KARLANEA 148
                 + I ++++ + EG V  V              + LC          K  + + A
Sbjct: 127 FAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLA 186

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             +  KM    +RP  + +N +I + C+KG +  A  +M  +   D YP+  TY S+I G
Sbjct: 187 RDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILG 246

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C    L+ A  +F  M + GC  N V YS L++G+C  G +E A+++L EM ++G    
Sbjct: 247 HCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG--IE 304

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P V TYT  +   C  G   EA+ +L +M+  GC PN  T + LI G   +G  + A  L
Sbjct: 305 PTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGL 364

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
             K++A G V +   Y++L+ +L    R + A  +F  ML+ G  P     + +I+  CL
Sbjct: 365 YHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCL 424

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM----LKKRI 444
            G + +   +++ + K G  SS +   ++ L+ G C++ +   A +L   M    LK   
Sbjct: 425 MGDIQKAMVIFDKMLKAG--SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDA 482

Query: 445 W 445
           W
Sbjct: 483 W 483



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 156/322 (48%), Gaps = 6/322 (1%)

Query: 122 EEGC-VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           ++GC   SV    +I  LC + RL  EAM +L +M +  + P    Y   +   C+ G  
Sbjct: 265 KDGCDPNSVTYSTLINGLCSEGRL-EEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCS 323

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A EL+  M      P+I T+ ++I G    G+ E A GL+  M   G     V Y+AL
Sbjct: 324 SEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNAL 383

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++ +C  G  E A  +   M   G    P+  TY  +I+ FC  G +++A+ I D+M   
Sbjct: 384 INQLCVEGRFETAFTIFKWMLSHGS--LPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKA 441

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G +PN +T +TLI G+C +GNL+ A +L++ +   G       Y+ L+    R  +L+ A
Sbjct: 442 GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHA 501

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             LF  M+  G+ P+ +  + +I       +V +   L+  + + G L S  S  ++V++
Sbjct: 502 TSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPS--SQTYNVMI 559

Query: 421 LGLCRKNHSVEAAKLARFMLKK 442
            G  + N   EA      M+K+
Sbjct: 560 SGFSKTNSISEAENFCGKMVKQ 581



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 178/405 (43%), Gaps = 17/405 (4%)

Query: 69  CFPSQSQMGIRFFIWAALQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEG 124
           C   + +     F W     S   S+  YN      C M  I Q   +I D +       
Sbjct: 388 CVEGRFETAFTIFKWMLSHGSLP-STQTYNEIIKCFCLMGDI-QKAMVIFDKMLKAGSSP 445

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
            V++   +  I+  C++  L N AM +L  M    L+PD   Y  +I  F   G +  A 
Sbjct: 446 NVITYNTL--IYGYCKQGNL-NNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHAT 502

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L  GM    + P+ +TY ++I G+ N  +++DA  LF  M   G   +   Y+ ++ G 
Sbjct: 503 SLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGF 562

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            +  S+  A    G+M K+G    PNV+TYTS I   C  G    A  I   ME     P
Sbjct: 563 SKTNSISEAENFCGKMVKQG--LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFP 620

Query: 305 NRVTISTLIKGFCVEGNLDEA--YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
           N  T S+LI G C EG  ++A  Y L+ ++   G   +   Y++LV  L    R  EA++
Sbjct: 621 NLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQ 680

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           L   M   G++P       ++   C   +V     ++  ++ +GF   +    +  L+  
Sbjct: 681 LVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSD--YKALICA 738

Query: 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI-VEHLKKSGDEEL 466
           LC++N   EA  + + ML+K  W     V  + ++ L K G+ +L
Sbjct: 739 LCKENFIEEAQCIFQTMLEKH-WNSDEVVWTVLLDGLLKEGETDL 782



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 38/177 (21%)

Query: 134 VIFNLCEKARLANEAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +I+ LC++ R  +  M+ +L ++  +   P+   Y  +++  C +G    AD+L+  M  
Sbjct: 628 LIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQK 687

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG---------------CAANL--- 234
             L P    Y +++ G C   ++E A  +F  M   G               C  N    
Sbjct: 688 KGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEE 747

Query: 235 -----------------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
                            V ++ LLDG+ + G  +  L+LL  ME    +C+ N  TY
Sbjct: 748 AQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESR--NCTLNFQTY 802


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 195/374 (52%), Gaps = 15/374 (4%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW-V 151
           S + +  C+ +R+ Q     ++++E+ K  GC   V    ++ + LC+++++A  A W V
Sbjct: 117 SVLIDGLCKANRVSQ----AVELLESMKARGCSPDVITYTILVDGLCKESKVA--AAWEV 170

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           LR+M +    P+ + YN+++   C    +  A  LM+ M      P+++TY ++I G C 
Sbjct: 171 LREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 230

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
            GR++DAC +   M   G   +L+ Y+ L++G+C+   ++ ++ LL       G   P+V
Sbjct: 231 VGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALL--RRAVSGGIKPDV 288

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           VTY+SVI   C    + EA  +L  +++ GC P+ +  STLI G C  G +DEA+ L + 
Sbjct: 289 VTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEV 348

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +   G  +    YS+L+  L +  R+ EA  L ++M+  G  P  +  + +I+ LC    
Sbjct: 349 MTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNH 408

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF--MLKKRIWLQGP 449
           + E   L E++E+     S  +  +++L+ G+CR    V++A L  F  M+   +     
Sbjct: 409 LDEAIELVEEMERSNCAPSAVT--YNILIHGMCRMER-VDSAALDYFQEMIDNGVIPDHI 465

Query: 450 YVDKIVEHLKKSGD 463
               ++E LKKS D
Sbjct: 466 TYSILLEGLKKSKD 479



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 10/310 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC   ++   A+   RKM +    P+ I Y+ +I   C+   +  A EL++ M   
Sbjct: 85  LVTGLCRAGKIET-ALEFFRKMDDR-CSPNVITYSVLIDGLCKANRVSQAVELLESMKAR 142

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ITY  ++ G C   ++  A  + + M   GC  NLV Y++LL G+CR   +  A
Sbjct: 143 GCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDA 202

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L L+ +M   G  C+PNVVTY ++I   C  G +K+A  +L  M   G  P+ +  + LI
Sbjct: 203 LALMRDMTCRG--CTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLI 260

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C    +DE+  L+ + V+GG       YSS++  L R+ RL EA +L   + + G  
Sbjct: 261 NGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCP 320

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVE 431
           PD +  S +I  LC  G+V E F LYE +   G     D+D+  +S L+ GLC+     E
Sbjct: 321 PDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDG----CDADVVTYSTLIDGLCKAGRVDE 376

Query: 432 AAKLARFMLK 441
           A  L   M++
Sbjct: 377 AHLLLARMVR 386



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 156/284 (54%), Gaps = 8/284 (2%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M +    P+ + YN++I   C+  +   A EL + M  ++  P ++TY +++ G    G+
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           LE A  LF+ M     + ++++++ L+ G+CR G +E ALE   +M+     CSPNV+TY
Sbjct: 61  LERAMALFQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKMDDR---CSPNVITY 116

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + +I   C    + +A+ +L+ M+A GC+P+ +T + L+ G C E  +  A++++ +++ 
Sbjct: 117 SVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLD 176

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G V +   Y+SL+  L R +R+ +A  L   M   G  P+ +    +I  LC  G+V +
Sbjct: 177 AGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKD 236

Query: 395 GFCLYED-IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
              +  D I+K G   + D  I+++L+ GLC+ +   E+  L R
Sbjct: 237 ACAMLADMIDKGG---TPDLMIYNMLINGLCKADQVDESIALLR 277



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 4/174 (2%)

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PNVVTY S+I   C       A  + + M+++ C+P+ VT +TL+ G    G L+ A 
Sbjct: 6   CEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAM 65

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L  +++   S      ++ LV  L R  +++ A + F KM      P+ +  SV+I  L
Sbjct: 66  ALFQEMLDRRSHDVIS-FNILVTGLCRAGKIETALEFFRKM-DDRCSPNVITYSVLIDGL 123

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           C   +V +   L E ++  G   S D   +++L+ GLC+++    A ++ R ML
Sbjct: 124 CKANRVSQAVELLESMKARG--CSPDVITYTILVDGLCKESKVAAAWEVLREML 175


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 185/393 (47%), Gaps = 29/393 (7%)

Query: 78  IRFFIWAALQSSYRH--SSF--MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM- 132
           +RFF W + +  ++H  S F  M NR            + I ++++ + EG V  V    
Sbjct: 95  LRFFFWISRRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFL 154

Query: 133 -------KVIFNLCE---------KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
                     + LC          K  + + A  +  KM    +RP  + +N +I + C+
Sbjct: 155 SEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCK 214

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
           KG +  A  +M  +   D YP+  TY S+I G C    L+ A  +F  M + GC  N V 
Sbjct: 215 KGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVT 274

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           YS L++G+C  G +E A+++L EM ++G    P V TYT  +   C  G   EA+ +L +
Sbjct: 275 YSTLINGLCSEGRLEEAMDMLEEMVQKG--IEPTVYTYTIPLVSLCDAGCSSEAVELLGK 332

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M+  GC PN  T + LI G   +G  + A  L  K++A G V +   Y++L+ +L    R
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR 392

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
            + A  +F  ML+ G  P     + +I+  CL G + +   +++ + K G  SS +   +
Sbjct: 393 FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAG--SSPNVITY 450

Query: 417 SVLLLGLCRKNHSVEAAKLARFM----LKKRIW 445
           + L+ G C++ +   A +L   M    LK   W
Sbjct: 451 NTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAW 483



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 156/322 (48%), Gaps = 6/322 (1%)

Query: 122 EEGC-VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           ++GC   SV    +I  LC + RL  EAM +L +M +  + P    Y   +   C+ G  
Sbjct: 265 KDGCDPNSVTYSTLINGLCSEGRL-EEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCS 323

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A EL+  M      P+I T+ ++I G    G+ E A GL+  M   G     V Y+AL
Sbjct: 324 SEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNAL 383

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++ +C  G  E A  +   M   G    P+  TY  +I+ FC  G +++A+ I D+M   
Sbjct: 384 INQLCVEGRFETAFTIFKWMLSHGS--LPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKA 441

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G +PN +T +TLI G+C +GNL+ A +L++ +   G       Y+ L+    R  +L+ A
Sbjct: 442 GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHA 501

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             LF  M+  G+ P+ +  + +I       +V +   L+  + + G L S  S  ++V++
Sbjct: 502 TSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPS--SQTYNVMI 559

Query: 421 LGLCRKNHSVEAAKLARFMLKK 442
            G  + N   EA      M+K+
Sbjct: 560 SGFSKTNSISEAENFCGKMVKQ 581



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 168/383 (43%), Gaps = 16/383 (4%)

Query: 69  CFPSQSQMGIRFFIWAALQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEG 124
           C   + +     F W     S   S+  YN      C M  I Q   +I D +       
Sbjct: 388 CVEGRFETAFTIFKWMLSHGSLP-STQTYNEIIKCFCLMGDI-QKAMVIFDKMLKAGSSP 445

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
            V++   +  I+  C++  L N AM +L  M    L+PD   Y  +I  F   G +  A 
Sbjct: 446 NVITYNTL--IYGYCKQGNL-NNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHAT 502

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L  GM    + P+ +TY ++I G+ N  +++DA  LF  M   G   +   Y+ ++ G 
Sbjct: 503 SLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGF 562

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            +  S+  A    G+M K+G    PNV+TYTS I   C  G    A  I   ME     P
Sbjct: 563 SKTNSISEAENFCGKMVKQG--LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFP 620

Query: 305 NRVTISTLIKGFCVEGNLDEA--YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
           N  T S+LI G C EG  ++A  Y L+ ++   G   +   Y++LV  L    R  EA++
Sbjct: 621 NLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQ 680

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           L   M   G++P       ++   C   +V     ++  ++ +GF   +    +  L+  
Sbjct: 681 LVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSD--YKALICA 738

Query: 423 LCRKNHSVEAAKLARFMLKKRIW 445
           LC++N   EA  + + ML+K  W
Sbjct: 739 LCKENFIEEAQCIFQTMLEKH-W 760



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 38/177 (21%)

Query: 134 VIFNLCEKARLANEAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +I+ LC++ R  +  M+ +L ++  +   P+   Y  +++  C +G    AD+L+  M  
Sbjct: 628 LIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQK 687

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG---------------CAANL--- 234
             L P    Y +++ G C   ++E A  +F  M   G               C  N    
Sbjct: 688 KGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEE 747

Query: 235 -----------------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
                            VA++ LLDG+ + G  +  L+LL  ME    +C+ N  TY
Sbjct: 748 AQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESR--NCTLNFQTY 802


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 166/310 (53%), Gaps = 7/310 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R+ +EA+ +L KM +    P  + YN++I   C+      A +L++ M   
Sbjct: 87  LIDGLCKGGRV-DEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYS 144

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PDI TY ++I GFC + + +DA  +F+ +   G   ++V YS L+DG+C+ G ++ A
Sbjct: 145 GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++L G M K G  C PN VTY S+I  FC  G M EA+ +L+RM   G +P+ VT +TL+
Sbjct: 205 IDLFGRMIKSGS-CMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLM 263

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC    LD+AY L++++   G       ++SL+  L R  RL +A  +  +M      
Sbjct: 264 NGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCS 323

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P     + ++   C   Q+ E       +E++    +V S   ++++ GLC+ N S EA 
Sbjct: 324 PTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVS--FNIMIRGLCKVNRSSEAM 379

Query: 434 KLARFMLKKR 443
           +L     ++R
Sbjct: 380 ELVEEARRRR 389



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 157/315 (49%), Gaps = 7/315 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+  RL  +A+  L KM      PD   Y  VI   C +  +  A + ++
Sbjct: 12  VTYTSLIQGLCKVKRL-EQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLE 70

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M   +L P+++TY  +I G C  GR+++A  L   M++  C    V Y++L+ G+C+  
Sbjct: 71  EMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKAE 129

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A +LL EM   G  C P++ TYT++I  FC      +AL + +++ A G  P+ VT
Sbjct: 130 RASEAYDLLEEMVYSG--CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGS-VSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            S LI G C EG L EA  L  +++  GS + +   Y+SL+    R  ++ EA  L  +M
Sbjct: 188 YSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERM 247

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
             +G  PD +  + ++   C   ++ + + L   + + G    V +   + L+ GLCR+N
Sbjct: 248 AETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVT--FTSLMDGLCREN 305

Query: 428 HSVEAAKLARFMLKK 442
              +A  +   M +K
Sbjct: 306 RLSDAVHILGEMRRK 320



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 138/260 (53%), Gaps = 5/260 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ RL        R +      P+T+ YN++I  FC  G M  A  L++ M   
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD++TY +++ GFC   RL+DA  L   M R G   ++V +++L+DG+CR   +  A
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDA 310

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +LGEM ++   CSP V TY +++  +C    ++EA   +  +E + C PN V+ + +I
Sbjct: 311 VHILGEMRRKS--CSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMI 366

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-GV 372
           +G C      EA +L+++            Y++++  L R K++ EA +++ KML   G 
Sbjct: 367 RGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGC 426

Query: 373 KPDGLACSVMIRELCLGGQV 392
            P+ +  S ++  LC  G +
Sbjct: 427 LPNSITYSTLVTGLCNAGML 446



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 6/281 (2%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D + Y ++I+  C+   +  A   +  M     +PD+ TY ++I   C   RL +A    
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + M       N+V Y+ L+DG+C+ G ++ A+ LL +M K+   C P  VTY S+I   C
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK---CVPTAVTYNSLISGLC 126

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
                 EA  +L+ M   GC P+  T +TLI GFC     D+A ++ +++VA G      
Sbjct: 127 KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVV 186

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASG-VKPDGLACSVMIRELCLGGQVLEGFCLYED 401
            YS L+  L +  RLKEA  LF +M+ SG   P+ +  + +I   C  G++ E   L E 
Sbjct: 187 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           + + G  SS D   ++ L+ G C+     +A  L   M +K
Sbjct: 247 MAETG--SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 285



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 139/273 (50%), Gaps = 15/273 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C M ++ +     ++++E   E G    V     + N  C+ ARL ++A  +L +M    
Sbjct: 232 CRMGKMDE----AMNLLERMAETGSSPDVVTYTTLMNGFCKLARL-DDAYDLLNQMTRKG 286

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L PD + + +++   C +  +  A  ++  M      P + TY +++ G+C A +LE+A 
Sbjct: 287 LTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEAR 346

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
               +++   C  N+V+++ ++ G+C++     A+EL+ E  +    C+P+VV YT+VI 
Sbjct: 347 KF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRR--RCNPDVVMYTTVID 402

Query: 280 IFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             C +  + EA  +  +M E  GC PN +T STL+ G C  G LD A   I+K    G V
Sbjct: 403 GLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEK----GCV 458

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
            + G Y+ L+    +  R ++A +L   M+  G
Sbjct: 459 PNIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 5/214 (2%)

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
           + C+A+ V Y++L+ G+C++  +E+AL  LG+M  +G    P+V TYT+VI   C +  +
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGF--HPDVYTYTAVIHALCVENRL 62

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            EA   L+ M      PN VT + LI G C  G +DEA  L+ K +    V +   Y+SL
Sbjct: 63  HEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSK-MRKKCVPTAVTYNSL 121

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  L + +R  EA  L  +M+ SG  PD    + +I   C   +  +   ++E +   GF
Sbjct: 122 ISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
              V +  +S L+ GLC++    EA  L   M+K
Sbjct: 182 RPDVVT--YSCLIDGLCKEGRLKEAIDLFGRMIK 213


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 180/372 (48%), Gaps = 41/372 (11%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N S+ +DV +  ++ GC   V     I +   K RL N+AM  L +M +  + P+   YN
Sbjct: 208 NTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYN 267

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR-------------- 214
            ++  FC  G +  A  L K M   D+ PD +T   ++ G C  G               
Sbjct: 268 CMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEK 327

Query: 215 ---------------------LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
                                + +A  +F++M R GCA  + +Y+ L++G C+   M+ A
Sbjct: 328 GVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEA 387

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL EM  +    +P+ VTY++++Q  C  G  KEAL I   M + G  PN VT S L+
Sbjct: 388 KSLLAEMYHKA--LNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILL 445

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE-LVRTKRLKEAEKLFSKMLASGV 372
            GFC  G+LDEA +L+ K +    +     + ++++E +    +L+ A++LFSK+ A G+
Sbjct: 446 DGFCKHGHLDEALKLL-KSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGI 504

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           +P     +VMI+ L   G   E + L+  +E  GFL   +S  ++V++ G  +   S  A
Sbjct: 505 RPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLP--NSCSYNVMIQGFLQNQDSSTA 562

Query: 433 AKLARFMLKKRI 444
            +L   M+ KR 
Sbjct: 563 IRLIDEMVGKRF 574



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 158/311 (50%), Gaps = 5/311 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC + ++  EA+ +  +M      P+ I YN +I   C+ G+   A ++ K M   
Sbjct: 164 LINGLCNEGKIK-EAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQN 222

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD++TY ++I   C    + DA      M   G   N+  Y+ ++ G C LG +  A
Sbjct: 223 GCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEA 282

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  EM   G D  P+ VT T ++   C +GM+ EA  + + M   G  PN  T + L+
Sbjct: 283 TRLFKEMV--GRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALM 340

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C++  ++EA ++ + ++  G       Y+ L+    +++R+ EA+ L ++M    + 
Sbjct: 341 DGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALN 400

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  S +++ LC  G+  E   +++++   G L ++ +  +S+LL G C+  H  EA 
Sbjct: 401 PDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVT--YSILLDGFCKHGHLDEAL 458

Query: 434 KLARFMLKKRI 444
           KL + M +K++
Sbjct: 459 KLLKSMQEKKL 469



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 143/297 (48%), Gaps = 4/297 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+    +M   + RP    +   +  F +K        L   M L  +  ++ +   +
Sbjct: 70  DDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVL 129

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I   C    ++ A  +   M + G       ++AL++G+C  G ++ A+EL  EM + G 
Sbjct: 130 INCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGH 189

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  PNV++Y ++I   C  G    A+ +  +ME  GC P+ VT +T+I   C +  +++A
Sbjct: 190 E--PNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDA 247

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            + + +++  G   +   Y+ +V       +L EA +LF +M+   V PD +  ++++  
Sbjct: 248 MEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDG 307

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC  G V E   ++E + + G   ++ +  ++ L+ G C +    EA K+   M+++
Sbjct: 308 LCKEGMVSEARLVFETMTEKGVEPNIST--YNALMDGYCLQRLMNEAKKVFEIMIRQ 362



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 132/292 (45%), Gaps = 18/292 (6%)

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSR 105
           +E  ++T  A +D  C+  ++     ++++      I           + + N  C+  R
Sbjct: 329 VEPNISTYNALMDGYCLQRLM-----NEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRR 383

Query: 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165
           + +  S++ ++         V    +M+    LC+  R   EA+ + ++M  + L P+ +
Sbjct: 384 MDEAKSLLAEMYHKALNPDTVTYSTLMQ---GLCQFGR-PKEALNIFKEMCSYGLLPNLV 439

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            Y+ ++  FC+ G +  A +L+K M    L P+I+ +  +I+G   AG+LE A  LF  +
Sbjct: 440 TYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKL 499

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
              G    +  Y+ ++ G+ + G  + A +L  +ME +G    PN  +Y  +IQ F    
Sbjct: 500 FADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDG--FLPNSCSYNVMIQGFLQNQ 557

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
               A+ ++D M     + N  T   L+       +L+   ++I + + G S
Sbjct: 558 DSSTAIRLIDEMVGKRFSANLSTFQMLL-------DLESQDEIISQFMRGSS 602


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 166/310 (53%), Gaps = 7/310 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R+ +EA+ +L KM +    P  + YN++I   C+      A +L++ M   
Sbjct: 87  LIDGLCKGGRV-DEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYS 144

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PDI TY ++I GFC + + +DA  +F+ +   G   ++V YS L+DG+C+ G ++ A
Sbjct: 145 GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++L G M K G  C PN VTY S+I  FC  G M EA+ +L+RM   G +P+ VT +TL+
Sbjct: 205 IDLFGRMIKSGS-CMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLM 263

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC    LD+AY L++++   G       ++SL+  L R  RL +A  +  +M      
Sbjct: 264 NGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCS 323

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P     + ++   C   Q+ E       +E++    +V S   ++++ GLC+ N S EA 
Sbjct: 324 PTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVS--FNIMIRGLCKVNRSSEAM 379

Query: 434 KLARFMLKKR 443
           +L     ++R
Sbjct: 380 ELVEEARRRR 389



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 157/315 (49%), Gaps = 7/315 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+  RL  +A+  L KM      PD   Y  VI   C +  +  A + ++
Sbjct: 12  VTYTSLIQGLCKVKRL-EQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLE 70

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M   +L P+++TY  +I G C  GR+++A  L   M++  C    V Y++L+ G+C+  
Sbjct: 71  EMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKAE 129

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A +LL EM   G  C P++ TYT++I  FC      +AL + +++ A G  P+ VT
Sbjct: 130 RASEAYDLLEEMVYSG--CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVT 187

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGS-VSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            S LI G C EG L EA  L  +++  GS + +   Y+SL+    R  ++ EA  L  +M
Sbjct: 188 YSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERM 247

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
             +G  PD +  + ++   C   ++ + + L   + + G    V +   + L+ GLCR+N
Sbjct: 248 AETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVT--FTSLMDGLCREN 305

Query: 428 HSVEAAKLARFMLKK 442
              +A  +   M +K
Sbjct: 306 RLSDAVHILGEMRRK 320



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 138/260 (53%), Gaps = 5/260 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ RL        R +      P+T+ YN++I  FC  G M  A  L++ M   
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD++TY +++ GFC   RL+DA  L   M R G   ++V +++L+DG+CR   +  A
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDA 310

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +LGEM ++   CSP V TY +++  +C    ++EA   +  +E + C PN V+ + +I
Sbjct: 311 VHILGEMRRKS--CSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMI 366

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-GV 372
           +G C      EA +L+++            Y++++  L R K++ EA +++ KML   G 
Sbjct: 367 RGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGC 426

Query: 373 KPDGLACSVMIRELCLGGQV 392
            P+ +  S +I  LC  G +
Sbjct: 427 LPNSITYSTLITGLCNAGML 446



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 140/281 (49%), Gaps = 6/281 (2%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D + Y ++I+  C+   +  A   +  M     +PD+ TY ++I   C   RL +A    
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + M       N+V Y+ L+DG+C+ G ++ A+ LL +M K+   C P  VTY S+I   C
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK---CVPTAVTYNSLISGLC 126

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
                 EA  +L+ M   GC P+  T +TLI GFC     D+A ++ +++VA G      
Sbjct: 127 KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVV 186

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASG-VKPDGLACSVMIRELCLGGQVLEGFCLYED 401
            YS L+  L +  RLKEA  LF +M+ SG   P+ +  + +I   C  G++ E   L E 
Sbjct: 187 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 246

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           + + G  SS D   ++ L+ G C+     +A  L   M +K
Sbjct: 247 MAETG--SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 285



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 139/273 (50%), Gaps = 15/273 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C M ++ +     ++++E   E G    V     + N  C+ ARL ++A  +L +M    
Sbjct: 232 CRMGKMDE----AMNLLERMAETGSSPDVVTYTTLMNGFCKLARL-DDAYDLLNQMTRKG 286

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L PD + + +++   C +  +  A  ++  M      P + TY +++ G+C A +LE+A 
Sbjct: 287 LTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEAR 346

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
               +++   C  N+V+++ ++ G+C++     A+EL+ E  +    C+P+VV YT+VI 
Sbjct: 347 KF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRR--RCNPDVVMYTTVID 402

Query: 280 IFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             C +  + EA  +  +M E  GC PN +T STLI G C  G LD A   I+K    G V
Sbjct: 403 GLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEK----GCV 458

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
            + G Y+ L+    +  R ++A +L   M+  G
Sbjct: 459 PNIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 5/214 (2%)

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
           + C+A+ V Y++L+ G+C++  +E+AL  LG+M  +G    P+V TYT+VI   C +  +
Sbjct: 5   NSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGF--HPDVYTYTAVIHALCVENRL 62

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            EA   L+ M      PN VT + LI G C  G +DEA  L+ K +    V +   Y+SL
Sbjct: 63  HEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSK-MRKKCVPTAVTYNSL 121

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  L + +R  EA  L  +M+ SG  PD    + +I   C   +  +   ++E +   GF
Sbjct: 122 ISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
              V +  +S L+ GLC++    EA  L   M+K
Sbjct: 182 RPDVVT--YSCLIDGLCKEGRLKEAIDLFGRMIK 213


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 176/348 (50%), Gaps = 10/348 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRK 154
           + N  C+   +K      I++++   +EG    V     VI  LC+   +  EA+  L +
Sbjct: 301 LVNGLCKAGHVKH----AIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEV-KEAVEFLDQ 355

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M   D  P+T+ YN +I   C++  +  A EL + +    + PD+ T+ S+I+G C    
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
              A  LF+ M+  GC  +   Y+ L+D +C  G ++ AL +L +ME  G  C+ +V+TY
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARSVITY 473

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            ++I  FC    ++EA  I D ME  G + N VT +TLI G C    +++A QL+D+++ 
Sbjct: 474 NTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIM 533

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y+SL+    R   +K+A  +   M ++G +PD +    +I  LC  G+V  
Sbjct: 534 EGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEV 593

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              L   I+  G   ++    ++ ++ GL RK  + EA  L R ML++
Sbjct: 594 ASKLLRSIQMKGI--ALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQ 639



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 166/323 (51%), Gaps = 9/323 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC KA     A+ ++  M +    PD   YN+VI   C+ G++  A E +  M   D  P
Sbjct: 305 LC-KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSP 363

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + +TY ++I   C   ++E+A  L +V+   G   ++  +++L+ G+C   +   A+EL 
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM  +G  C P+  TY  +I   C KG + EAL +L +ME  GCA + +T +TLI GFC
Sbjct: 424 EEMRSKG--CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
               + EA ++ D++   G   +   Y++L+  L +++R+++A +L  +M+  G KPD  
Sbjct: 482 KANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKF 541

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKL 435
             + ++   C GG + +      DI +    +  + DI  +  L+ GLC+      A+KL
Sbjct: 542 TYNSLLTHFCRGGDIKKA----ADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597

Query: 436 ARFMLKKRIWLQGPYVDKIVEHL 458
            R +  K I L     + +++ L
Sbjct: 598 LRSIQMKGIALTPHAYNPVIQGL 620



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 147/292 (50%), Gaps = 16/292 (5%)

Query: 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           A E++R+  +  I+ DV        C  +     +I  LC   R    AM +  +M    
Sbjct: 384 ATELARVLTSKGILPDV--------CTFN----SLIQGLC-LTRNHRVAMELFEEMRSKG 430

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             PD   YN +I   C KG +  A  ++K M L      +ITY ++I GFC A ++ +A 
Sbjct: 431 CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAE 490

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +F  M+ HG + N V Y+ L+DG+C+   +E A +L+ +M  EG    P+  TY S++ 
Sbjct: 491 EIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQ--KPDKFTYNSLLT 548

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            FC  G +K+A  I+  M + GC P+ VT  TLI G C  G ++ A +L+  +   G   
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIAL 608

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASG-VKPDGLACSVMIRELCLGG 390
           +   Y+ ++  L R ++  EA  LF +ML      PD ++  ++ R LC GG
Sbjct: 609 TPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGG 660



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 150/316 (47%), Gaps = 36/316 (11%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           KM  + ++PD   +N +I+  C    +  A  +++ M    L PD  T+ ++++G+   G
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEG 238

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG-------- 265
            L+ A  + + M   GC+ + V+ + ++ G C+ G +E AL  + EM  + G        
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298

Query: 266 --------------------------DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
                                        P+V TY SVI   C  G +KEA+  LD+M  
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMIT 358

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
             C+PN VT +TLI   C E  ++EA +L   + + G +     ++SL+  L  T+  + 
Sbjct: 359 RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV 418

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A +LF +M + G +PD    +++I  LC  G++ E   + + +E  G   SV +  ++ L
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVIT--YNTL 476

Query: 420 LLGLCRKNHSVEAAKL 435
           + G C+ N   EA ++
Sbjct: 477 IDGFCKANKIREAEEI 492



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 7/226 (3%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC  SV     + +   KA    EA  +  +M    +  +++ YN +I   C+   +  A
Sbjct: 465 GCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDA 524

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            +LM  M +    PD  TY S++  FC  G ++ A  + + M  +GC  ++V Y  L+ G
Sbjct: 525 SQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 584

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM-EALGC 302
           +C+ G +E A +LL  ++ +G   +P+   Y  VIQ    K    EA+ +   M E    
Sbjct: 585 LCKAGRVEVASKLLRSIQMKGIALTPHA--YNPVIQGLFRKRKTTEAINLFREMLEQNEA 642

Query: 303 APNRVTISTLIKGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSL 347
           AP+ V+   + +G C  G  + EA   + +++  G V     +SSL
Sbjct: 643 APDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPE---FSSL 685


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 165/328 (50%), Gaps = 13/328 (3%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V++    + CV +     ++ N   KA     A  + R M     RP+++IY ++I  
Sbjct: 280 LKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHG 339

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           F + G M  A  L   M      PD+IT+  MI G C +G  E A   F+ M R GC  N
Sbjct: 340 FAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPN 399

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V Y+ ++ G+ ++G +  A  ++  M   G  C P+ VTY  ++  FC  G + EA  +
Sbjct: 400 VVTYTTIIQGLSKIGRVANAFRIMKGMIAHG--CFPDSVTYICLLDGFCKLGRLDEAAQL 457

Query: 294 LDRMEALGCAPNRVTISTLIKGFC----VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           LD ++    +PN    S+L+KG C    VE  LD+ ++      A  ++  G C  S++V
Sbjct: 458 LDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFE--QSKAAAENLDPGLC-CSIIV 514

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--GQVLEGFCLYEDIEKIGF 407
            L +T RL EA ++F +M++ G KPD    +++I  LC     +V   F L  D+E +G+
Sbjct: 515 GLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGY 574

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           L   D+  ++ L +GLC+      A K+
Sbjct: 575 LP--DAVTYTPLCIGLCKIGEVDRAVKM 600



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 179/417 (42%), Gaps = 42/417 (10%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM 103
           +NI   L  V  ++  + V  VL       +   I FF WA  Q+ ++H  F YN    +
Sbjct: 71  HNIRNVLGPVHGQVLGSHVAAVLRSL--KVTGTAISFFRWAGEQAGFQHDVFTYNCLMNL 128

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
              ++N S    + E   + G   +     ++     + R A++A+     M     +PD
Sbjct: 129 LVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPD 188

Query: 164 TIIYNNVIRLFCEKG----------DMIA--------------------------ADELM 187
              +  ++   C+ G          +M+A                          A E+ 
Sbjct: 189 LHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVF 248

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M      PD I Y +MI G   AG  ++A  +   M    C    V Y  L++ +C+ 
Sbjct: 249 GQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKA 308

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G++ERA EL   M   G    PN V YTS+I  F   G MKEA  + D M   G  P+ +
Sbjct: 309 GTLERAEELFRVMAASG--FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVI 366

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + +I G C  GN ++A +  ++++ GG   +   Y++++  L +  R+  A ++   M
Sbjct: 367 THTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGM 426

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           +A G  PD +    ++   C  G++ E   L ++++K    SS +  ++S L+ GLC
Sbjct: 427 IAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCS--SSPNLQLYSSLVKGLC 481



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 167/353 (47%), Gaps = 22/353 (6%)

Query: 104 SRIKQNPSIIIDVVEAYK------EEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           + I Q  S I  V  A++        GC   SV  + ++   C+  RL +EA  +L ++ 
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRL-DEAAQLLDELD 462

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAA-DELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
           +    P+  +Y+++++  C+ G +    D+L +         D     S+I G C  GRL
Sbjct: 463 KCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRL 522

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRL--GSMERALELLGEMEKEGGDCSPNVVT 273
           ++AC +F+ M   GC  +   Y+ L++G+CR     +ERA  LL ++E  G    P+ VT
Sbjct: 523 DEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVG--YLPDAVT 580

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YT +    C  G +  A+ +L+   + G   + V  + L  G C +G +D A  L  ++V
Sbjct: 581 YTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMV 640

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G       Y  ++  L++ K+L++A K F +M+  G KP     + +++ LC  G V 
Sbjct: 641 RQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVD 700

Query: 394 EGFCLYEDI----EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           E F  +E +    E +G +   D+ IH     G C+      A KL   M+ +
Sbjct: 701 EAFHRFEGMLARGELVGSVMIYDALIH-----GFCKALKVDAALKLFEDMISR 748



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 162/343 (47%), Gaps = 17/343 (4%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP--------------EF 158
           I++ ++  + +G   SV  ++ +        L +    VLR +               + 
Sbjct: 54  IVETIKDVRLDGSSWSVHNIRNVLGPVHGQVLGSHVAAVLRSLKVTGTAISFFRWAGEQA 113

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
             + D   YN ++ L   + +      + + M    + P+  ++  +I+ F    R +DA
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
              F++MKR  C  +L  +  L+D +C+ G  E+A E+  EM   G    P+   +T+++
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGF-VPPDRALHTAMV 232

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
           +       +KEA  +  +ME  G  P+ +  +T+I G    G+  EA +++D ++A   V
Sbjct: 233 RTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACV 292

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y  LV  L +   L+ AE+LF  M ASG +P+ +  + +I      G++ E   L
Sbjct: 293 PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSL 352

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           ++++ + G+   V +  H+V++ GLC+  +  +AAK    M++
Sbjct: 353 FDEMVEAGYRPDVIT--HTVMIDGLCKSGNFEQAAKSFEEMMR 393



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 129/277 (46%), Gaps = 37/277 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD--MIAADELMKGMG 191
           +I  LC+  RL +EA  + ++M     +PD   YN +I   C   +  +  A  L+  + 
Sbjct: 512 IIVGLCKTGRL-DEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE 570

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           ++   PD +TY  +  G C  G ++ A  + +     G  A++VAY+AL  G+C  G ++
Sbjct: 571 MVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630

Query: 252 RALELLGEMEKEGG--DCS-------------------------------PNVVTYTSVI 278
           RA+ L  EM ++GG  D +                               P V TYT+++
Sbjct: 631 RAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALV 690

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTI-STLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           Q  C  G + EA    + M A G     V I   LI GFC    +D A +L + +++ G+
Sbjct: 691 QALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGN 750

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           V +    +SL   LVR+ + ++A++L  +M A G  P
Sbjct: 751 VPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPP 787



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +P    Y  +++  C  G++  A    +GM    +L   ++ Y ++I GFC A +++ A 
Sbjct: 680 KPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAAL 739

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
            LF+ M   G     V  ++L DG+ R G  E+A ELL EM    G   P+  T+T+++
Sbjct: 740 KLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEM--AAGGSPPHAATFTAIL 796



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 1/168 (0%)

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           E  G   +  T + L+     E N  + Y + ++++  G   +   ++ L+    RT+R 
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
            +A   F  M     KPD     +++  LC  G   + F ++ ++  +GF+   D  +H+
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPP-DRALHT 229

Query: 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            ++  L +     EA ++   M K          + +++ L K+G  +
Sbjct: 230 AMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQ 277



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 49/101 (48%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           +L    +IY+ +I  FC+   + AA +L + M      P  +T  S+  G   +G+ E A
Sbjct: 714 ELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKA 773

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
             L + M   G   +   ++A+LDG+ +     + L+L+ E
Sbjct: 774 QELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 180/383 (46%), Gaps = 35/383 (9%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           LQS    + F YN       +  N  + +   +  +++GC+ +V     + +   K R  
Sbjct: 197 LQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKI 256

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++   +LR M    L P+ I YN VI   C +G M     ++  M       D +TY ++
Sbjct: 257 DDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTL 316

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG- 264
           IKG+C  G    A  +   M RHG + +++ Y++L+  +C+ G+M RA E L +M   G 
Sbjct: 317 IKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGL 376

Query: 265 --------------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALG 292
                                              SP+VVTY ++I   C  G M +A+ 
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIA 436

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L+ M+  G  P+ V+ ST++ GFC   ++DEA ++  K+VA G       YSSL+    
Sbjct: 437 VLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFC 496

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
             +R KEA  LF +ML  G+ PD    + +I   C+ G + +   L+ ++ + G L  V 
Sbjct: 497 EQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVV 556

Query: 413 SDIHSVLLLGLCRKNHSVEAAKL 435
           +  +SVL+ GL ++  + EA +L
Sbjct: 557 T--YSVLINGLNKQARTREAKRL 577



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 156/294 (53%), Gaps = 4/294 (1%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           V ++M +  + P+   YN +IR FC  G++  A      M      P+++TY ++I G+C
Sbjct: 192 VFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYC 251

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
              +++D   L + M   G   NL++Y+ +++G+CR G M+    +L EM K G   S +
Sbjct: 252 KLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRG--YSLD 309

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
            VTY ++I+ +C +G   +AL +   M   G +P+ +T ++LI   C  GN++ A + +D
Sbjct: 310 EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLD 369

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G   +   Y++LV    +   + EA ++  +M+ +G  P  +  + +I   C+ G
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAG 429

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           ++++   + ED+++ G    V S  +S +L G CR     EA ++ R M+ K I
Sbjct: 430 KMVDAIAVLEDMKEKGLTPDVVS--YSTVLSGFCRSYDVDEALRVKRKMVAKGI 481



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 170/378 (44%), Gaps = 51/378 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC + R+  E  +VL +M +     D + YN +I+ +C++G+   A  +   M   
Sbjct: 281 VINGLCREGRM-KEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 339

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P +ITY S+I   C AG +  A      M+  G   N   Y+ L+DG  + G M  A
Sbjct: 340 GLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +L EM   G   SP+VVTY ++I   C  G M +A+ +L+ M+  G  P+ V+ ST++
Sbjct: 400 YRVLKEMIDNG--FSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVL 457

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC   ++DEA ++  K+VA G       YSSL+      +R KEA  LF +ML  G+ 
Sbjct: 458 SGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLP 517

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL------------------------- 408
           PD    + +I   C+ G + +   L+ ++ + G L                         
Sbjct: 518 PDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRL 577

Query: 409 -------SSVDSDI--HSV--------------LLLGLCRKNHSVEAAKLARFMLKKRIW 445
                   SV SD+  H++              L+ G C K    EA ++   ML+K   
Sbjct: 578 LLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHK 637

Query: 446 LQGPYVDKIVEHLKKSGD 463
             G   + ++    + GD
Sbjct: 638 PDGTAYNVMIHGHCRGGD 655



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 132/263 (50%), Gaps = 17/263 (6%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A+ VL  M E  L PD + Y+ V+  FC   D+  A  + + M    + PD ITY S+I
Sbjct: 433 DAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLI 492

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +GFC   R ++AC LF  M R G   +   Y+AL++  C  G +++A++L  EM ++G  
Sbjct: 493 QGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKG-- 550

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI------------- 313
             P+VVTY+ +I     +   +EA  +L ++      P+ VT  TLI             
Sbjct: 551 VLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVS 610

Query: 314 --KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
             KGFC++G + EA Q+ + ++       G  Y+ ++    R   +++A  L+ +M+ SG
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSG 670

Query: 372 VKPDGLACSVMIRELCLGGQVLE 394
                +    +++ L   G+V E
Sbjct: 671 FLLHTVTVIALVKTLHKEGKVNE 693



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 129/272 (47%), Gaps = 17/272 (6%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I V+E  KE+G    V     + +   ++   +EA+ V RKM    ++PDTI Y+++I+ 
Sbjct: 435 IAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQG 494

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FCE+     A +L   M  + L PD  TY ++I  +C  G L+ A  L   M   G   +
Sbjct: 495 FCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPD 554

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY---------------TSVI 278
           +V YS L++G+ +      A  LL ++  E  +  P+ VTY                S+I
Sbjct: 555 VVTYSVLINGLNKQARTREAKRLLLKLFYE--ESVPSDVTYHTLIENCSNIEFKSVVSLI 612

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
           + FC KGMM EA  + + M      P+    + +I G C  G++ +AY L  ++V  G +
Sbjct: 613 KGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFL 672

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
                  +LV  L +  ++ E   + + +L S
Sbjct: 673 LHTVTVIALVKTLHKEGKVNELNSVIANVLRS 704



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 8/219 (3%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE- 263
           ++K +     ++ A  +  + + HG    +++Y+A+LD   R    +R +     + KE 
Sbjct: 140 VVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIR---SKRNISFAENVFKEM 196

Query: 264 -GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
                SPNV TY  +I+ FC  G +  AL   DRME  GC PN VT +TLI G+C    +
Sbjct: 197 LQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKI 256

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           D+ ++L+  +   G   +   Y+ ++  L R  R+KE   + ++M   G   D +  + +
Sbjct: 257 DDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTL 316

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSV---DSDIHSV 418
           I+  C  G   +   ++ ++ + G   SV    S IHS+
Sbjct: 317 IKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSM 355


>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
 gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 209/418 (50%), Gaps = 10/418 (2%)

Query: 29  ASPAERFYTHLQKNPNNIEK---TLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAA 85
           AS  E+ Y  L+K  + + K    L      L +     VL+RC      +  +FF+WA+
Sbjct: 48  ASDVEKVYRLLRKFHSRVPKLELALQESGVVLRNGLTERVLNRC-GDAGILAYKFFVWAS 106

Query: 86  LQSSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL 144
            Q  YRH    Y    + +S++KQ  ++   + E  ++   +++ ++  V+      +R+
Sbjct: 107 KQPCYRHCYENYKAMIKVLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFASSRM 166

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            N+A+ VL +MP++   PD  ++  ++   C+ G +  A  L + M  +   P +  +  
Sbjct: 167 VNKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMR-VRFSPSLKHFTC 225

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           ++ G+C  G+L +A  +   M+  G   ++V Y+ LL G    G M  A +LL E+ ++G
Sbjct: 226 LLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRRKG 285

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
             C PN  +YT +IQ  CG+  M EA+ +   ME  GC  + VT + L+ GFC    +D+
Sbjct: 286 --CDPNATSYTILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGFCKWRMIDK 343

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
            YQ++  ++  G + +   Y  L++   + + L+E ++L  +M   G  PD    +V+IR
Sbjct: 344 GYQILQSMIQKGHMPNQLTYLHLMLAHEKKEELEECKELMGEMQKIGCIPDLSIYNVVIR 403

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             C  G+V  G   + ++E  G    +D+ +  +++ G     + VEA +  + M+++
Sbjct: 404 LACKLGEVNAGVDAWNEMEVSGLSPGLDTFV--IMINGFLGHGYLVEACQYFKEMVER 459



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 6/174 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD  IYN VIRL C+ G++ A  +    M +  L P + T+V MI GF   G L +AC  
Sbjct: 393 PDLSIYNVVIRLACKLGEVNAGVDAWNEMEVSGLSPGLDTFVIMINGFLGHGYLVEACQY 452

Query: 222 FKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           FK M   G   +        LL+ + R   +E A +L   +  +G  C  NV ++T  I 
Sbjct: 453 FKEMVERGLLSSRQYGILKDLLNALLRGEKLELAKDLWSCIVTKG--CELNVDSWTIWIH 510

Query: 280 IFCGKGMMKEALGI-LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
                G +KEA    LD M+A    P   T + L++G     N   A ++ +KV
Sbjct: 511 ALFSNGHVKEACSYCLDMMDA-DLMPKPETFAKLMRGLRKLYNRQFAAEITEKV 563


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 206/421 (48%), Gaps = 16/421 (3%)

Query: 17  KNSKIFALHFTTASPAERFYTHLQKNPNNIEK---TLATVKAKLDSTCVIEVLHRCFPSQ 73
           KNSK    +   AS  E+ Y  L+K  + + K    L     +L    +  VL+RC    
Sbjct: 73  KNSK----YDEFASDVEKAYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRC-GDA 127

Query: 74  SQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132
             +G RFF+WAA Q  Y HS  +Y    + +S+++Q  ++   + E  KE   ++  ++ 
Sbjct: 128 GNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELF 187

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
            V+      A +  +A+ VL +MP F L PD  ++  ++   C+ G +  A +L + M L
Sbjct: 188 VVLVQRFASADMVKKAIEVLDEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRL 247

Query: 193 IDLYP-DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
              +P ++  + S++ G+C   ++ +A  +   MK  G   ++V Y+ LL G    G M 
Sbjct: 248 --RFPVNLRYFTSLLYGWCREEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGKMA 305

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
            A +LL +M + G +  PN   YT +IQ  C    M+EA+ +   ME   C  + VT + 
Sbjct: 306 DAYDLLKDMRRRGFE--PNATCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTA 363

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           L+ GFC  G +D+ Y ++D ++  G + S   Y  ++    + ++L E  +L  KM    
Sbjct: 364 LVSGFCKWGKIDKCYLVLDDMIKKGLMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIE 423

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
             PD    +V+IR  C  G+V E   L+ ++E  G   S  +D   +++ GL  +   +E
Sbjct: 424 YHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGL--SPGADTFVIIINGLTSQGCLLE 481

Query: 432 A 432
           A
Sbjct: 482 A 482



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 85/200 (42%), Gaps = 13/200 (6%)

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
           EK     E + ++ KM + +  PD  IYN VIRL C+ G++  A  L   M    L P  
Sbjct: 404 EKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGLSPGA 463

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            T+V +I G  + G L +AC  FK M   G       +S    G  +L       +   E
Sbjct: 464 DTFVIIINGLTSQGCLLEACDHFKEMVARGL------FSVPQYGTLKLLLNTLLKDKKLE 517

Query: 260 MEKE-------GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           M K+        G C  +V ++T  I     KG  KEA      M  L   P   T + L
Sbjct: 518 MAKDVWSCITSKGSCELSVSSWTIWIHALFSKGYEKEACSYCLEMIELEFMPQPDTFAKL 577

Query: 313 IKGFCVEGNLDEAYQLIDKV 332
           +KG     + + A ++ +KV
Sbjct: 578 MKGLKKLYHREFAVEITEKV 597


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 174/375 (46%), Gaps = 41/375 (10%)

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKAR-LANEAMWVLRKMPEFDLRPDT 164
           K++ S +I + +         +V  + ++ N LC   R   + A   L KM +  L+P  
Sbjct: 82  KKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTH 141

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + +  ++   C K  +I A +L   +G +   P +ITY ++IKG C  G   +A  L K 
Sbjct: 142 VTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKK 201

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+  GC  ++VAY+ ++D +C+      A+    EM  +G    PNVVTY+S++  FC  
Sbjct: 202 MEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQG--IPPNVVTYSSILHGFCNL 259

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG------------------------ 320
           G + EA  +  +M      PN VT + L+ G C EG                        
Sbjct: 260 GQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTY 319

Query: 321 -----------NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
                       +DEA +L D +V  G   S   Y+ L+    +++RL EA+ L S+M  
Sbjct: 320 SALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYD 379

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
             + PD +  S +++  C  G+      L++++   G L   DS  +S+LL GLC+  H 
Sbjct: 380 RDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLP--DSITYSILLDGLCKHGHL 437

Query: 430 VEAAKLARFMLKKRI 444
            EA +L + M + +I
Sbjct: 438 DEAFRLLKAMQESKI 452



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 165/327 (50%), Gaps = 4/327 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + +++  +E+GC   V     + +   K R ANEAM+   +M +  + P+ + Y++++  
Sbjct: 196 LQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHG 255

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC  G +  A  L K M   ++ P+ +T+  ++ G C  G + +A  +F++M  +G   +
Sbjct: 256 FCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPD 315

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              YSAL+DG C    M+ A +L   M  +G   +P+V  Y  +I   C    + EA  +
Sbjct: 316 AYTYSALMDGYCLQSQMDEAQKLFDIMVGKG--FAPSVRVYNILINGHCKSRRLNEAKTL 373

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L  M      P+ VT STL++GFC  G    A +L  ++ + G +     YS L+  L +
Sbjct: 374 LSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCK 433

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
              L EA +L   M  S ++P     +++I+ +C  G++     L+ ++   G   SV +
Sbjct: 434 HGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVT 493

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFML 440
             ++V++ GL ++  S EA ++ R M+
Sbjct: 494 --YTVMISGLLKEGLSNEACEMFRKMV 518



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 2/226 (0%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +G   SV++  ++ N   K+R  NEA  +L +M + DL PDT+ Y+ +++ FC+ G    
Sbjct: 345 KGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQV 404

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +L K M    L PD ITY  ++ G C  G L++A  L K M+      ++  Y+ L+ 
Sbjct: 405 AQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQ 464

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C  G +E A EL   +  +G    P+VVTYT +I     +G+  EA  +  +M   GC
Sbjct: 465 GMCNFGKLEAARELFSNLFVKG--IQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGC 522

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            PN  T +  I+GF   G+   A +LI+++V  G  +    +  L+
Sbjct: 523 LPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLL 568



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 138/283 (48%), Gaps = 6/283 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR--LEDAC 219
           P  +++N ++    +K        L K M L ++ P++ T   +I   C++ R  +  A 
Sbjct: 67  PPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAF 126

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
                M + G     V +  LL+G+C    +  A++L  E+ K G   +P+++TYT++I+
Sbjct: 127 SALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMG--FAPSLITYTTIIK 184

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G    AL +L +ME  GC P+ V  +T+I   C +   +EA     ++V  G   
Sbjct: 185 GLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPP 244

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   YSS++       +L EA  LF +M+   V P+ +  ++++  LC  G +LE   ++
Sbjct: 245 NVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVF 304

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           E + + G     D+  +S L+ G C ++   EA KL   M+ K
Sbjct: 305 EMMTENGV--EPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGK 345


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 179/396 (45%), Gaps = 37/396 (9%)

Query: 80  FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF-NL 138
           FF WA  Q  Y H +  YN   E+         +          GCV +      +  +L
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSL 62

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C+  R   EA  V R M      P+   Y+ +I   C    +  A EL+  M      P+
Sbjct: 63  CQAQRF-EEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPN 121

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++TY S++ G C  G+L++A  LF  M   GC  + V Y+ L+DG  + G M  A  L  
Sbjct: 122 VVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFE 181

Query: 259 EMEKEG---------------------------------GDCSPNVVTYTSVIQIFCGKG 285
           EM ++G                                   C PN+ T+ +++  FC  G
Sbjct: 182 EMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMG 241

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            M EA  +   M +LGC P+ V+ +TLI+G C +G   EA +L+ +++  G       Y+
Sbjct: 242 DMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYN 301

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
            L+    ++  L  A KLF ++  SG++PD  + S +I  LC  G+V   F +++D+   
Sbjct: 302 ILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIAN 361

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           G  S+ D+ +   L++GLCR     E+ +L + M+K
Sbjct: 362 G--SAPDAAVVIPLVIGLCRGERLTESCELFQAMVK 395



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 157/334 (47%), Gaps = 9/334 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+M ++K+     +D+       GC     +  V+ +   K     EA  +  +M E   
Sbjct: 133 CKMGKLKE----AVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGC 188

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P    YN+++  F  KG+      L K M      P+I T+ +++ GFC  G + +A  
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHR 248

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M+  GC  ++V+Y+ L+ G+C  G    A  LL EM + G    P++V+Y  +I  
Sbjct: 249 LFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSG--VGPDIVSYNILIDG 306

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +   G +  A+ +   +   G  P+  + ST+I   C  G +  A+ +   ++A GS   
Sbjct: 307 YSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPD 366

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
                 LV+ L R +RL E+ +LF  M+     P     ++++ +LC   +  +   ++ 
Sbjct: 367 AAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFH 426

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           ++ + GF  S D +I  V+L  L R++   +AA+
Sbjct: 427 ELTERGF--SPDVEISKVILETL-RRSDDKDAAE 457



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 142/314 (45%), Gaps = 43/314 (13%)

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN-------------------------- 233
           ++Y  +++    +GR +   G +  M   GC  N                          
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 234 ---------LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
                    + +YS L+ G+CR   ++ A ELL EM  +GG   PNVVTY S++   C  
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEM-IDGGH-QPNVVTYGSLLSGLCKM 135

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G +KEA+ +  RM   GC P+ V  + LI GF  +G++ EAY+L ++++  G + +   Y
Sbjct: 136 GKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTY 195

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +SL+    R       + LF  ML  G  P+    + ++   C  G ++E   L+ ++  
Sbjct: 196 NSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRS 255

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464
           +G    V S  ++ L+ G+C K    EA +L R M++  +       + +++   KSG  
Sbjct: 256 LGCPPDVVS--YNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGAL 313

Query: 465 E----LITNLPKIG 474
           +    L   +PK G
Sbjct: 314 DHAIKLFYEIPKSG 327



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 8/220 (3%)

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           +V   HG     ++Y+ LL+ + + G  +       +M   G  C PN  TY  +++  C
Sbjct: 10  QVHYNHG----TLSYNYLLEVLAKSGRCDHVYGTYNDMLAAG--CVPNTYTYGYLLRSLC 63

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
                +EA  +   M A GC+PN  + S LI G C    +DEA +L+++++ GG   +  
Sbjct: 64  QAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVV 123

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y SL+  L +  +LKEA  LFS+M+  G  PDG+  +V+I      G + E + L+E++
Sbjct: 124 TYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEM 183

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            + G + +V +  ++ LL G  RK        L + ML++
Sbjct: 184 LEKGCIPTVFT--YNSLLSGFSRKGEFGRVQSLFKDMLRQ 221


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 206/408 (50%), Gaps = 20/408 (4%)

Query: 77  GIRFFIWAALQSSYRHSSFMYNRACEMS-RIKQN--PSIIIDVVEAYKEEGCVVSVKMMK 133
            + FF WA     + HS   YN   +++ ++KQ      +ID+++A   E  VV+  M+ 
Sbjct: 131 ALAFFNWATAGEGFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLV 190

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
             +    +A LA EA+    +M ++    D I ++NVI + C+K   + A      +   
Sbjct: 191 RRY---VRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKH- 246

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+I Y S++ G+C AG + +A  +F+ MK  G + N+  YS ++D +CR G + RA
Sbjct: 247 KFEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRA 306

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++  EM   G  C+PN VT+ ++I++    G  ++ L + ++M+ L CA + +T + LI
Sbjct: 307 HDVFAEMLDAG--CNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLI 364

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           +  C + NL EA ++++ +       +   ++ +   + +++ +  A ++F++M   G K
Sbjct: 365 ETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCK 424

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV--LLLGLCRKNHSVE 431
           P+ +  ++++R   +       F L +++++      V+ + ++   L+   C   H   
Sbjct: 425 PNTVTYNILMRMFAVPKSADMIFKLKKEMDE----EEVEPNFNTYRELIALYCGMGHWNH 480

Query: 432 AAKLARFMLKKR-IWLQGPYVDKIVEHLKKSGD----EELITNLPKIG 474
           A    R M+ ++ I    P    ++E L+K+G     EEL+  + + G
Sbjct: 481 AYMFFREMIDEKCIKPSMPLYKMVLEELRKAGQLKKHEELVDKMVERG 528


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 162/306 (52%), Gaps = 8/306 (2%)

Query: 134 VIFNLCEKARLANEAMWVLR-KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           V+ +LC     A  A+ + R +M    + P  + YN +I   C+  ++ A  EL + +  
Sbjct: 51  VLQSLCRAGETA-RALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVK 109

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
              +PD++TY ++I   C AG LE+A  L   M   GC  N+V YS L++G+C++G ++ 
Sbjct: 110 RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDE 169

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME--ALGCAPNRVTIS 310
           A EL+ EM ++  D  PN++TY S +   C + M  EA  ++  +   +L  +P+ VT S
Sbjct: 170 ARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFS 229

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           TLI G C  G  DEA    D ++AGG V +   Y++LV  L +  +++ A  +   M+  
Sbjct: 230 TLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDK 287

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           GV PD +  SV++   C   +V E   L   +   G   +V +   + ++ GLC+ + S 
Sbjct: 288 GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVT--FNSIIDGLCKSDRSG 345

Query: 431 EAAKLA 436
           EA ++A
Sbjct: 346 EAFQIA 351



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 7/339 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+   L    M +  ++ +    PD + YN +I   C+ GD+  A  L  
Sbjct: 82  VTYNTIINGLCKSNELG-AGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHG 140

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA--NLVAYSALLDGICR 246
           GM      P+++TY  +I G C  GR+++A  L + M R  C    N++ Y++ LDG+C+
Sbjct: 141 GMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCK 200

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
                 A EL+  +       SP+ VT++++I   C  G   EA    D M A G  PN 
Sbjct: 201 QSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNV 258

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT + L+ G C    ++ A+ +I+ +V  G       YS LV    +  R+ EA +L   
Sbjct: 259 VTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHG 318

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M + G  P+ +  + +I  LC   +  E F +   ++    +   D    ++L+ G C+ 
Sbjct: 319 MASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIA--LQVYNRMLVPDKVTFNILIAGACKA 376

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            +  +A+ L   M+ K +         +++ L K+G  E
Sbjct: 377 GNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVE 415



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 154/319 (48%), Gaps = 4/319 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V +V     + N   KA     A  ++  M +  + PD I Y+ ++  FC+   +  A
Sbjct: 253 GYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 312

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            EL+ GM      P+++T+ S+I G C + R  +A  +   +       + V ++ L+ G
Sbjct: 313 LELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAG 372

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+ G+ E+A  L  EM  +  +  P+V+T+ ++I   C  G ++ A  ILD M  LG  
Sbjct: 373 ACKAGNFEQASALFEEMVAK--NMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVP 430

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN VT + L+ G C  G ++E  + ++++V+ G V     Y SLV  L R  R  +A +L
Sbjct: 431 PNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQL 490

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
            SK+ + G  PD +  ++++  L   G+  +   + E  E +G     DS   +    GL
Sbjct: 491 VSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE--EMVGKGHQPDSFTFAACFGGL 548

Query: 424 CRKNHSVEAAKLARFMLKK 442
            R  +     +L R +L K
Sbjct: 549 HRSGNLAGTMELLRVVLAK 567



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 145/291 (49%), Gaps = 8/291 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           S + +  C+ SR+ +     ++++      GC  +V     I + LC+  R + EA  + 
Sbjct: 297 SVLVDAFCKASRVDE----ALELLHGMASRGCTPNVVTFNSIIDGLCKSDR-SGEAFQIA 351

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
            ++    L PD + +N +I   C+ G+   A  L + M   ++ PD++T+ ++I G C A
Sbjct: 352 LQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKA 411

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G++E A  +  +M   G   N+V Y+ L+ G+C+ G +E   E L EM   G  C P  +
Sbjct: 412 GQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSG--CVPESM 469

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TY S++   C      +AL ++ ++++ G  P+ VT + L+ G    G  ++A  +++++
Sbjct: 470 TYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEM 529

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           V  G       +++    L R+  L    +L   +LA G+ PD   CS ++
Sbjct: 530 VGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 580



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 5/199 (2%)

Query: 237 YSALLDGICRLGSMERALELL-GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           Y+ +L  +CR G   RALE+  GEM ++G   +P +VTY ++I   C    +   + + +
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDG--VAPTIVTYNTIINGLCKSNELGAGMELFE 105

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            +   G  P+ VT +TLI   C  G+L+EA +L   + + G V +   YS L+  L +  
Sbjct: 106 ELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVG 165

Query: 356 RLKEAEKLFSKML--ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           R+ EA +L  +M   +  V P+ +  +  +  LC      E   L   +       S D+
Sbjct: 166 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 225

Query: 414 DIHSVLLLGLCRKNHSVEA 432
              S L+ GLC+   + EA
Sbjct: 226 VTFSTLIDGLCKCGQTDEA 244



 Score = 45.1 bits (105), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 6/143 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C+  RI++    + ++V +    GCV  S+    +++ LC  +R  ++A+ ++ K+  F 
Sbjct: 444 CKSGRIEEPCEFLEEMVSS----GCVPESMTYGSLVYALCRASR-TDDALQLVSKLKSFG 498

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             PDT+ YN ++    + G    A  +++ M      PD  T+ +   G   +G L    
Sbjct: 499 WDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTM 558

Query: 220 GLFKVMKRHGCAANLVAYSALLD 242
            L +V+   G   +    S++LD
Sbjct: 559 ELLRVVLAKGMLPDATTCSSILD 581


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 169/314 (53%), Gaps = 4/314 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E GC  +V     I N   K+   + A+ +LRKM E +++ D   Y+ +I   C  G + 
Sbjct: 163 ENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCID 222

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
           AA  L K M    +   ++TY S++ G C AG+  D   L K M       N++ ++ L+
Sbjct: 223 AAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLI 282

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           D   + G ++ A EL  EM  +G   SPN +TY S++  +C +  + EA  +LD M    
Sbjct: 283 DVFVKEGKLQEANELYKEMITKG--ISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNN 340

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C+P+ VT ++LIKG+C    +DE  +L  K+   G V++   YS LV    ++ +L+ AE
Sbjct: 341 CSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAE 400

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +LF +M++ GV PD +   +++  LC  G++ +   ++ED++K     ++D  ++++++ 
Sbjct: 401 ELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM--NLDIVMYTIIIE 458

Query: 422 GLCRKNHSVEAAKL 435
           G+C+     +A  L
Sbjct: 459 GMCKGGKVEDAWNL 472



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 180/337 (53%), Gaps = 5/337 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC +++++ EA+ ++ +M E   +P+ + YN+++   C+ GD   A +L++ M   
Sbjct: 141 LINGLCLESKVS-EAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDER 199

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++  D+ TY ++I   C  G ++ A  LFK M+  G  ++LV Y++L+ G+C+ G     
Sbjct: 200 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDG 259

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++LL +M        PNV+T+  +I +F  +G ++EA  +   M   G +PN +T ++L+
Sbjct: 260 VQLLKDMTSR--KIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLM 317

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C++  L EA  ++D +V          ++SL+    + KR+ E  KLF K+   G+ 
Sbjct: 318 DGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLV 377

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            + +  S++++  C  G++     L++++  +G L  V +  + +LL GLC      +A 
Sbjct: 378 ANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMT--YGILLDGLCDNGKLEKAL 435

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           ++   + K ++ L       I+E + K G  E   NL
Sbjct: 436 EIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNL 472



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 144/288 (50%), Gaps = 2/288 (0%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           + +V    V+ ++  K     EA  + ++M    + P+TI YN+++  +C +  +  A+ 
Sbjct: 272 IPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANN 331

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           ++  M   +  PDI+T+ S+IKG+C   R+++   LF+ + + G  AN V YS L+ G C
Sbjct: 332 MLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFC 391

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G +E A EL  EM   G    P+V+TY  ++   C  G +++AL I + ++      +
Sbjct: 392 QSGKLEIAEELFQEMVSLG--VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLD 449

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  + +I+G C  G +++A+ L   +   G   +   Y+ ++  L +   L EA  L  
Sbjct: 450 IVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLR 509

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           KM   G +P+    + +IR     G +     L E+++  GF +   S
Sbjct: 510 KMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASS 557



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 4/229 (1%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           +DA  LF+ M R     +LV +S    G+         L+   +ME  G   + N+ T  
Sbjct: 47  DDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNG--IAHNIYTLN 104

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I  FC       A  +L ++  LG  P+  T +TLI G C+E  + EA  L+ ++V  
Sbjct: 105 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVEN 164

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   Y+S+V  + ++     A  L  KM    VK D    S +I  LC  G +   
Sbjct: 165 GCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAA 224

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             L++++E  G  SS+ +  ++ L+ GLC+     +  +L + M  ++I
Sbjct: 225 ISLFKEMETKGIKSSLVT--YNSLVGGLCKAGKWNDGVQLLKDMTSRKI 271



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 116/248 (46%), Gaps = 4/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P ++ +     G  +  +        K M+ +G A N+   + +++  CR      A  +
Sbjct: 63  PSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 122

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           LG++ K G +  P+  T+ ++I   C +  + EA+ ++ RM   GC PN VT ++++ G 
Sbjct: 123 LGKVMKLGYE--PDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGI 180

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G+   A  L+ K+      +    YS+++  L R   +  A  LF +M   G+K   
Sbjct: 181 CKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSL 240

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + ++  LC  G+  +G  L +D+     + +V +   +VL+    ++    EA +L 
Sbjct: 241 VTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVIT--FNVLIDVFVKEGKLQEANELY 298

Query: 437 RFMLKKRI 444
           + M+ K I
Sbjct: 299 KEMITKGI 306


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 130/224 (58%), Gaps = 2/224 (0%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P    YN +I   C++GD+ AA  L + M    L PD +TY SMI G+   GRL+D   
Sbjct: 130 KPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVY 189

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F+ MK   C  +++ Y+ L++  C+ G + + LE   EM++ G    PNVV+Y++++  
Sbjct: 190 FFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSG--LKPNVVSYSTLVDA 247

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC + MM++AL     M  LG  PN  T ++L+  +C  GNL +A++L D++   G   +
Sbjct: 248 FCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWN 307

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
              Y++L+  L   +R+KEAE+LF KM+ +GV P+  + + +I 
Sbjct: 308 VVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIH 351



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 119/238 (50%), Gaps = 2/238 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++ ++   +M      PD I YN +I  FC+ G +    E  + M    L P++++Y ++
Sbjct: 185 DDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTL 244

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +  FC    ++ A   +  M+R G   N   Y++L+D  C++G++  A  L  EM + G 
Sbjct: 245 VDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGV 304

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +   NVVTYT++I   C    +KEA  +  +M   G  PN  + + LI GF    N+D A
Sbjct: 305 EW--NVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRA 362

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            +L+D++   G       Y + +  L   ++++ A+ + ++M   G+K +    + ++
Sbjct: 363 LELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLM 420



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 154/326 (47%), Gaps = 5/326 (1%)

Query: 118 EAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           E  K   C   V     + N  C+  +L  + +   R+M +  L+P+ + Y+ ++  FC+
Sbjct: 192 EEMKSMSCEPDVITYNTLINCFCKFGKLP-KGLEFFREMKQSGLKPNVVSYSTLVDAFCK 250

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
           +  M  A +    M  + L P+  TY S++  +C  G L DA  L   M + G   N+V 
Sbjct: 251 EDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVT 310

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y+AL+DG+C +  ++ A EL G+M   G    PN+ +YT++I  F     M  AL +LD 
Sbjct: 311 YTALIDGLCDVERIKEAEELFGKMVTAG--VIPNLASYTALIHGFVKAKNMDRALELLDE 368

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M+  G  P+ +   T I   C    ++ A  +++++   G  ++   Y++L+    +++ 
Sbjct: 369 MKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSEN 428

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
             E   L  +ML   ++   +   V+I  LC    V +    +  I    F    ++ I+
Sbjct: 429 PSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISN-DFGLQANAAIY 487

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKK 442
           + ++ GLC+++    A  L   M +K
Sbjct: 488 TAMIDGLCKEDQVEAATTLFEQMAQK 513



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 133/305 (43%), Gaps = 17/305 (5%)

Query: 52  TVKAKLDSTCVIEVLHRCF---PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQ 108
           T  + +D+ C I  L   F      SQ+G+    W  +  +      + +  C++ RIK+
Sbjct: 275 TYTSLVDAYCKIGNLSDAFRLADEMSQVGVE---WNVVTYTA-----LIDGLCDVERIKE 326

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
              +   +V A    G + ++     + +   KA+  + A+ +L +M    ++PD ++Y 
Sbjct: 327 AEELFGKMVTA----GVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYG 382

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
             I   C    + AA  +M  M    +  +   Y +++  +  +    +   L + M   
Sbjct: 383 TFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLEL 442

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
                 V +  L+DG+C+   + +A++  G +  + G    N   YT++I   C +  ++
Sbjct: 443 DIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFG-LQANAAIYTAMIDGLCKEDQVE 501

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            A  + ++M   G  P+R   ++LI G   +GN+ +A  L DK+   G V SG  +  L 
Sbjct: 502 AATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIG-VESGARFGDLC 560

Query: 349 VELVR 353
              ++
Sbjct: 561 QNTIK 565



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 132/324 (40%), Gaps = 51/324 (15%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I NL +  RLA+E       M +  +  + + Y  +I   C+   +  A+EL   M    
Sbjct: 286 IGNLSDAFRLADE-------MSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAG 338

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           + P++ +Y ++I GF  A  ++ A  L   MK  G   +L+ Y   +  +C L  +E A 
Sbjct: 339 VIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAK 398

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIF--------------------------------- 281
            ++ EM+++G     N   YT+++  +                                 
Sbjct: 399 VVMNEMQEKG--IKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLID 456

Query: 282 --CGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             C   ++ +A+    R+    G   N    + +I G C E  ++ A  L +++   G V
Sbjct: 457 GLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLV 516

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSVMIR-ELCLGGQVLE 394
                Y+SL+   ++   + +A  L  KM   GV+     G  C   I+  L +G +V  
Sbjct: 517 PDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVESGARFGDLCQNTIKLSLRMGARV-- 574

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSV 418
           G   Y       ++SS  +D++SV
Sbjct: 575 GVQHYNLGSADSYISSSLNDLNSV 598


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 205/435 (47%), Gaps = 34/435 (7%)

Query: 24  LHFTTASPAERFYTHLQ---------KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQS 74
           LH +TA    R  +  Q         ++ +NI + L   +  L    V  VL R      
Sbjct: 49  LHLSTARKLARSESLQQDVLDLLGLLQSGSNIRERLEQWRGTLQPAVVSRVLQRL--KDP 106

Query: 75  QMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN------PSIIIDVVEA-YKEEGCVV 127
           Q  I FF+WA     ++HS+F   R C +  + +N      P++   +++A Y  +    
Sbjct: 107 QTAIVFFVWAG-DRGFKHSTF--TRNCFLQTLLENGSSDRIPAMFERMLDAGYAPD---- 159

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           S     VI +LC+  ++ ++A  +L K      +P+  +Y  + R FC+ G +  A E+ 
Sbjct: 160 SYTYHLVIKSLCQMNQI-DKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIF 218

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + +      PD I Y ++I G C     + A    K M     A ++  Y+ L+DG+C+ 
Sbjct: 219 RNIP----SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKA 274

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
              ++A E+L EM   G   +P+ VT+ S++   C  G  + A  +L  M    C P+  
Sbjct: 275 SKTDKASEMLHEMVDRG--VTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCC 332

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T +TLI G C + N+D A  L+D+ V+ G V     YS L   L +  R+ EA +L  +M
Sbjct: 333 TYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEM 392

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  P+ +  + +I  LC   +  + + L E +   GF+  V +  +++++ GLC++ 
Sbjct: 393 SGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVT--YTIIVDGLCKEG 450

Query: 428 HSVEAAKLARFMLKK 442
              +A K+   MLK+
Sbjct: 451 RLDKALKMVEGMLKR 465



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 177/370 (47%), Gaps = 42/370 (11%)

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTI 165
           +QN     D+V+ +   G V  V    ++ + LC++ R+ +EA  ++++M      P+ +
Sbjct: 344 QQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRI-DEAFELVKEMSGKGCTPNLV 402

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            YN +I   C+      A EL++ +      PD++TY  ++ G C  GRL+ A  + + M
Sbjct: 403 TYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM 462

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
            + GC  +++ Y+AL++G+CR G ++ A  +  EM  +  DC+ + + Y S++  +C   
Sbjct: 463 LKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK--DCTADALAYVSLVNGYCKSS 520

Query: 286 MMKEALGILD--------------------------------RMEALGCAPNRVTISTLI 313
             KEA  ++D                                 M   GC PN  T + ++
Sbjct: 521 RTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVM 580

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G +DEA+  ++ + + G V     Y+ ++  L +  + KEA ++  +M+ +G+ 
Sbjct: 581 DGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIP 640

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVE 431
           PD +  + ++ + C   +  +   + +++ K G    VD D   ++ L+ GL + N   +
Sbjct: 641 PDAVTYNTLMAQFCKEERFDDAVGILKNMIKAG----VDPDNVTYNTLISGLSQTNRLGD 696

Query: 432 AAKLARFMLK 441
           A +L   ML+
Sbjct: 697 AYELMHEMLR 706



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 162/325 (49%), Gaps = 9/325 (2%)

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           +E+    GCV  V    +I +   KA    EA  VL +M +  + PD + YN ++  FC+
Sbjct: 596 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 655

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL-V 235
           +     A  ++K M    + PD +TY ++I G     RL DA  L   M R+GC  +   
Sbjct: 656 EERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACT 715

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ ++D +C+ G +++AL L+  M   G     N VTY   I   C +G + EA  +L 
Sbjct: 716 TYNTIIDRLCKEGCLKQALLLMDHMTGHG--VEANTVTYNIFIDRLCKEGRLDEASSLLS 773

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA-GGSVSSGGCYSSLVVELVRT 354
            M+ L    + V+ +T+I G C    LD A +L  ++VA  G   +   ++ L+    +T
Sbjct: 774 EMDTLR---DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKT 830

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
           KRL EA  L   M+  G  P  +  +++I  LC   +V + + L++++   G ++S  S 
Sbjct: 831 KRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVS- 889

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFM 439
            ++VL+ GLC +    EA ++   M
Sbjct: 890 -YTVLIYGLCGQGRGKEALQVLEEM 913



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 166/364 (45%), Gaps = 48/364 (13%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + +VE   + GC  SV     +   LC   R+ +EA  + ++M   D   D + Y +++ 
Sbjct: 456 LKMVEGMLKRGCTPSVITYTALMEGLCRTGRV-DEAHHIFKEMVSKDCTADALAYVSLVN 514

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            +C+      A +++ G   I   P I  Y +++ G+C  GRL++   +F+ M   GC  
Sbjct: 515 GYCKSSRTKEAQKVVDG---IRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVP 571

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N+  Y+ ++DG+C+ G ++ A   L  M   G  C P+VV+Y  +I         KEA  
Sbjct: 572 NIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG--CVPDVVSYNIIIDGLFKASKPKEARQ 629

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +LD+M   G  P+ VT +TL+  FC E   D+A  ++  ++  G       Y++L+  L 
Sbjct: 630 VLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLS 689

Query: 353 RTKRLKEAEKLFSKML------------------------------------ASGVKPDG 376
           +T RL +A +L  +ML                                      GV+ + 
Sbjct: 690 QTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANT 749

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  ++ I  LC  G++ E   L  +++ +      D   ++ +++GLC+      A+KLA
Sbjct: 750 VTYNIFIDRLCKEGRLDEASSLLSEMDTLR-----DEVSYTTVIIGLCKAEQLDRASKLA 804

Query: 437 RFML 440
           R M+
Sbjct: 805 REMV 808



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 163/358 (45%), Gaps = 38/358 (10%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + +  C+  RI +      ++V+    +GC  ++     + +   KA    +A  +L 
Sbjct: 370 SILADGLCKRGRIDE----AFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLE 425

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            +      PD + Y  ++   C++G +  A ++++GM      P +ITY ++++G C  G
Sbjct: 426 SLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTG 485

Query: 214 RLEDACGLFKVMKRHGCAANLVAY--------------------------------SALL 241
           R+++A  +FK M    C A+ +AY                                +AL+
Sbjct: 486 RVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALM 545

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG C+ G ++    +  +M   G  C PN+ TY  V+   C  G + EA   L+ M + G
Sbjct: 546 DGYCKEGRLDEIPNVFEDMACRG--CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG 603

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C P+ V+ + +I G        EA Q++D+++  G       Y++L+ +  + +R  +A 
Sbjct: 604 CVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAV 663

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
            +   M+ +GV PD +  + +I  L    ++ + + L  ++ + G + S  +  ++++
Sbjct: 664 GILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTII 721



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 22/204 (10%)

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +  T    +Q     G       + +RM   G AP+  T   +IK  C    +D+A+ ++
Sbjct: 124 STFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTML 183

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           DK    G       Y+ L     +T RLK+A ++F  + +    PD +A + +I      
Sbjct: 184 DKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS----PDAIAYNAII------ 233

Query: 390 GQVLEGFCLYEDIE-KIGFLSSV-------DSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
                G C   D +  + FL  +       D   +++L+ GLC+ + + +A+++   M+ 
Sbjct: 234 ----HGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVD 289

Query: 442 KRIWLQGPYVDKIVEHLKKSGDEE 465
           + +       + I++ L K+G  E
Sbjct: 290 RGVTPDTVTFNSIMDGLCKAGKFE 313



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 48/108 (44%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +G  ++     ++ +   K +  +EA+ +L  M +    P  I YN VI   C+   +  
Sbjct: 811 KGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDK 870

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           A EL   M +  +    ++Y  +I G C  GR ++A  + + M    C
Sbjct: 871 AWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDC 918


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 190/384 (49%), Gaps = 23/384 (5%)

Query: 62  VIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN-------RACEMSRIKQNPSIII 114
           VI VL        ++  R F WAA Q  ++H+ F YN       +    S+ ++   I  
Sbjct: 7   VIHVLENI--KSPKLASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARK---IFD 61

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           D++  YKE  C+ ++    ++   LC+ A+  + A+ +L+ M    L P T I N ++  
Sbjct: 62  DML--YKE--CLPNIYTYGIVLRGLCDDAK-TDAALELLQDMESKMLTPTTFIVNMLVSC 116

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C+ G + AA EL K +   +   D I+Y  +  G C A +++ A  +F  M+ +    +
Sbjct: 117 LCKNGKVDAAYELYKRLS-DECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPS 175

Query: 234 LVAYSALLDGICRLGSMERALELLGEM--EKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
           L+ Y+ LL G CR G ME+A+ LL EM   K+G D  P++ +Y +VI  FC    +  A 
Sbjct: 176 LLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTAR 235

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +L RM   GC+PN VT +TL+ G C+ G LDEA  + + +V      +   Y+ L+   
Sbjct: 236 YVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGH 295

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            R  R+ +A   F  ML  GV+P+    + +I  LC   +V +   + + +   G   +V
Sbjct: 296 ARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNV 355

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKL 435
            +  ++ ++  LC+      A KL
Sbjct: 356 VT--YTRVIGALCKGGQIERATKL 377



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 133/278 (47%), Gaps = 9/278 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   R++Q  +++ +++E  K    V  +     + +   KAR    A +VLR+M +   
Sbjct: 187 CRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGC 246

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + +N ++   C  G +  A+ + + M   +  P  +TY  +I G   A R++ A  
Sbjct: 247 SPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKAND 306

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F  M R G   N+  Y+AL+ G+C    +E ALE+L  M   G +  PNVVTYT VI  
Sbjct: 307 YFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGRE--PNVVTYTRVIGA 364

Query: 281 FCGKGMMKEALGILDRMEALG-----CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            C  G ++ A  + +  +A+G     C P+    ST++   C +    EAY+   ++V  
Sbjct: 365 LCKGGQIERATKLFN--DAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVES 422

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             V+    Y ++   L   +  ++ E++  +  A G++
Sbjct: 423 KLVAKPHIYKAMADGLELVQETEKVERVCLEASAHGIE 460


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 170/329 (51%), Gaps = 7/329 (2%)

Query: 116 VVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +VEA   +GC  +V     ++  LC+  +L +EA  +L++M      P+ + YN +I   
Sbjct: 242 LVEAMVSKGCSPNVVTYSSLLHGLCKAGKL-DEATALLQRMTRSGCSPNIVTYNTIIDGH 300

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ G +  A  L++ M      P+++TY  ++  FC  G+ EDA GL +VM   G   NL
Sbjct: 301 CKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNL 360

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             Y++LLD  C+   +ERA +LL  M ++G  C PNVV+Y +VI   C    + E + +L
Sbjct: 361 FTYNSLLDMFCKKDEVERACQLLSSMIQKG--CVPNVVSYNTVIAGLCKATKVHEGVLLL 418

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           ++M +  C P+ VT +T+I   C    +D AY+L + +   G   +   Y+SLV  L ++
Sbjct: 419 EQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKS 478

Query: 355 KRLKEAEKLFSKML-ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           +R  +AE L  +M    G  PD +  + +I  LC   +V   + L+  +   G   + D 
Sbjct: 479 RRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL--APDD 536

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             +S+++  LC+     EA  +   MLK 
Sbjct: 537 VTYSIVISSLCKWRFMDEANNVLELMLKN 565



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 179/360 (49%), Gaps = 13/360 (3%)

Query: 86  LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141
           + + +  + F YN      C+ +R++      + ++E     GC   V     + N   K
Sbjct: 71  VDNGFAPNVFSYNTVLHGFCKANRVEN----ALWLLEQMVMRGCPPDVVSYTTVINGLCK 126

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
               +EA  V+ KM +   +P+ I Y  ++  FC  GD+  A EL++ M      P+ IT
Sbjct: 127 LDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAIT 186

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALELLGEM 260
           Y +++ G C+  +L+ A  LFK M+  G C  ++  YS ++D + + G ++ A  L+  M
Sbjct: 187 YNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAM 246

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G  CSPNVVTY+S++   C  G + EA  +L RM   GC+PN VT +T+I G C  G
Sbjct: 247 VSKG--CSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLG 304

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            +DEAY L++++V GG   +   Y+ L+    +  + ++A  L   M+  G  P+    +
Sbjct: 305 RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYN 364

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            ++   C   +V     L   + + G + +V S  ++ ++ GLC+     E   L   ML
Sbjct: 365 SLLDMFCKKDEVERACQLLSSMIQKGCVPNVVS--YNTVIAGLCKATKVHEGVLLLEQML 422



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 162/309 (52%), Gaps = 4/309 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+   C+  R+ N A+W+L +M      PD + Y  VI   C+   +  A  +M  M   
Sbjct: 85  VLHGFCKANRVEN-ALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQR 143

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P++ITY +++ GFC  G L+ A  L + M   G   N + Y+ ++ G+C    ++ A
Sbjct: 144 GCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSA 203

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+L  EME E G C P+V TY++++      G + +A  +++ M + GC+PN VT S+L+
Sbjct: 204 LQLFKEME-ESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLL 262

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G LDEA  L+ ++   G   +   Y++++    +  R+ EA  L  +M+  G +
Sbjct: 263 HGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQ 322

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  +V++   C  G+  +   L E + + G++ ++ +  ++ LL   C+K+    A 
Sbjct: 323 PNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFT--YNSLLDMFCKKDEVERAC 380

Query: 434 KLARFMLKK 442
           +L   M++K
Sbjct: 381 QLLSSMIQK 389



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 167/316 (52%), Gaps = 6/316 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           SV    +I  L +  RL ++A+ +L +M +    P+   YN V+  FC+   +  A  L+
Sbjct: 44  SVTYNTMINGLSKSDRL-DDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 102

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M +    PD+++Y ++I G C   ++++AC +   M + GC  N++ Y  L+DG CR+
Sbjct: 103 EQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 162

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-CAPNR 306
           G ++ A+EL+ +M + G    PN +TY +++   C    +  AL +   ME  G C P+ 
Sbjct: 163 GDLDGAVELVRKMTERGY--RPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDV 220

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
            T ST++      G +D+A +L++ +V+ G   +   YSSL+  L +  +L EA  L  +
Sbjct: 221 FTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQR 280

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M  SG  P+ +  + +I   C  G++ E + L E++   G   +V +  ++VLL   C+ 
Sbjct: 281 MTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVT--YTVLLDAFCKC 338

Query: 427 NHSVEAAKLARFMLKK 442
             + +A  L   M++K
Sbjct: 339 GKAEDAIGLVEVMVEK 354



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 178/349 (51%), Gaps = 8/349 (2%)

Query: 60  TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
           T +++   +C  ++  +G+   +   ++  Y  + F YN   +M   K        ++ +
Sbjct: 329 TVLLDAFCKCGKAEDAIGL---VEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSS 385

Query: 120 YKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
             ++GCV +V     VI  LC KA   +E + +L +M   +  PD + +N +I   C+  
Sbjct: 386 MIQKGCVPNVVSYNTVIAGLC-KATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTY 444

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAY 237
            +  A EL   +      P+++TY S++ G C + R + A  L + M R  GC+ +++ Y
Sbjct: 445 RVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITY 504

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + ++DG+C+   ++RA +L  +M  +G   +P+ VTY+ VI   C    M EA  +L+ M
Sbjct: 505 NTVIDGLCKSKRVDRAYKLFLQMLSDG--LAPDDVTYSIVISSLCKWRFMDEANNVLELM 562

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
              G  P  +T  TLI GFC  GNLD+A +++  +++ GS      +S  +  L +  RL
Sbjct: 563 LKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRL 622

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++A +L   ML +G+ PD +  + +++  C   +  +   L+E + + G
Sbjct: 623 RQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCG 671



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 164/308 (53%), Gaps = 7/308 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC+  +  ++A+   R+M +    PD++ YN +I    +   +  A  L++ M   
Sbjct: 16  ILRGLCDAGQ-CSDAVLHFREMSK-TCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDN 73

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P++ +Y +++ GFC A R+E+A  L + M   GC  ++V+Y+ +++G+C+L  ++ A
Sbjct: 74  GFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEA 133

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             ++ +M + G  C PNV+TY +++  FC  G +  A+ ++ +M   G  PN +T + ++
Sbjct: 134 CRVMDKMIQRG--CQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIM 191

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
            G C    LD A QL  ++   GS       YS++V  LV++ ++ +A +L   M++ G 
Sbjct: 192 HGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGC 251

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            P+ +  S ++  LC  G++ E   L + + + G   ++ +  ++ ++ G C+     EA
Sbjct: 252 SPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVT--YNTIIDGHCKLGRIDEA 309

Query: 433 AKLARFML 440
             L   M+
Sbjct: 310 YHLLEEMV 317



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 161/326 (49%), Gaps = 3/326 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I +VE   E+G V ++     + ++  K      A  +L  M +    P+ + YN VI  
Sbjct: 345 IGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAG 404

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C+   +     L++ M   +  PDI+T+ ++I   C   R++ A  LF +++  GC  N
Sbjct: 405 LCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPN 464

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           LV Y++L+ G+C+    ++A  LL EM ++ G CSP+++TY +VI   C    +  A  +
Sbjct: 465 LVTYNSLVHGLCKSRRFDQAEYLLREMTRKQG-CSPDIITYNTVIDGLCKSKRVDRAYKL 523

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
             +M + G AP+ VT S +I   C    +DEA  +++ ++  G       Y +L+    +
Sbjct: 524 FLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCK 583

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           T  L +A ++   +L+ G  PD +  S+ I  L   G++ +   L E + + G +   D+
Sbjct: 584 TGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVP--DT 641

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFM 439
             ++ LL G C  + + +A  L   M
Sbjct: 642 VTYNTLLKGFCDASRTEDAVDLFEVM 667



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 131/273 (47%), Gaps = 39/273 (14%)

Query: 204 SMIKGFCNAG----------------------------------RLEDACGLFKVMKRHG 229
           S+++G C+AG                                  RL+DA  L + M  +G
Sbjct: 15  SILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNG 74

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
            A N+ +Y+ +L G C+   +E AL LL +M   G  C P+VV+YT+VI   C    + E
Sbjct: 75  FAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRG--CPPDVVSYTTVINGLCKLDQVDE 132

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  ++D+M   GC PN +T  TL+ GFC  G+LD A +L+ K+   G   +   Y++++ 
Sbjct: 133 ACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMH 192

Query: 350 ELVRTKRLKEAEKLFSKMLASG-VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
            L   ++L  A +LF +M  SG   PD    S ++  L   G+V +   L E +   G  
Sbjct: 193 GLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCS 252

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            +V +  +S LL GLC+     EA  L + M +
Sbjct: 253 PNVVT--YSSLLHGLCKAGKLDEATALLQRMTR 283



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 139/276 (50%), Gaps = 10/276 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C+  R+     I  ++    +E GC  + V    ++  LC K+R  ++A ++LR+M    
Sbjct: 441 CKTYRV----DIAYELFNLIQESGCTPNLVTYNSLVHGLC-KSRRFDQAEYLLREMTRKQ 495

Query: 160 -LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
              PD I YN VI   C+   +  A +L   M    L PD +TY  +I   C    +++A
Sbjct: 496 GCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 555

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             + ++M ++G     + Y  L+DG C+ G++++ALE+L  +  +G    P+VVT++  I
Sbjct: 556 NNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGS--YPDVVTFSIFI 613

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                +G +++A  +L+ M   G  P+ VT +TL+KGFC     ++A  L + +   G  
Sbjct: 614 DWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCE 673

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSK-MLASGVK 373
                Y++LV  LV  K  K+     SK M+ +G K
Sbjct: 674 PDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFK 709


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 183/367 (49%), Gaps = 5/367 (1%)

Query: 77  GIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136
            + FF WA     +  S   YN   +++   ++  +   +++  K  G  ++V    V+ 
Sbjct: 126 SLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLV 185

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
               +A LA EA+    +M ++  +PD + ++ VI   C+K     A+     +      
Sbjct: 186 RRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKH-KFE 244

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+I Y S++ G+C AG +  A  +F  MK  G   N+  YS ++D +CR G + RA ++
Sbjct: 245 PDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDV 304

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             EM   G  C PN VT+ S++++    G  ++ L + ++M+ LGCA + ++ + LI+  
Sbjct: 305 FSEMIDAG--CDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESH 362

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C + NLDEA +++D +V  G   +   ++S+   +     +  A ++++KM      P+ 
Sbjct: 363 CKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNT 422

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           L  ++++R       +     L +++++     +V++  + +L+L  C K H   A  L 
Sbjct: 423 LTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNT--YRILILMFCEKGHWNNAYNLM 480

Query: 437 RFMLKKR 443
           + M++++
Sbjct: 481 KEMVEEK 487


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 189/384 (49%), Gaps = 23/384 (5%)

Query: 62  VIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN-------RACEMSRIKQNPSIII 114
           VI VL        ++  R F WAA Q  + H+ F YN       +    S+ ++   I  
Sbjct: 7   VIHVLENI--KSPKLASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARK---IFD 61

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           D++  YKE  C+ ++    ++   LC+ A+  + A+ +L+ M    L P T I N ++  
Sbjct: 62  DML--YKE--CLPNIYTYGIVLRGLCDDAK-TDAALELLQDMESKMLTPTTFIVNMLVSC 116

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C+ G + AA EL K +   +   D I+Y  +  G C A +++ A  +F  M+ +    +
Sbjct: 117 LCKNGKVDAAYELYKRLS-DECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPS 175

Query: 234 LVAYSALLDGICRLGSMERALELLGEM--EKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
           L+ Y+ LL G CR G ME+A+ LL EM   K+G D  P++ +Y +VI  FC    +  A 
Sbjct: 176 LLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTAR 235

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +L RM   GC+PN VT +TL+ G C+ G LDEA  + + +V      +   Y+ L+   
Sbjct: 236 YVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGH 295

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            R  R+ +A   F  ML  GV+P+    + +I  LC   +V +   + + +   G   +V
Sbjct: 296 ARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNV 355

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKL 435
            +  ++ ++  LC+      A KL
Sbjct: 356 VT--YTRVIGALCKGGQIERATKL 377



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 133/278 (47%), Gaps = 9/278 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   R++Q  +++ +++E  K    V  +     + +   KAR    A +VLR+M +   
Sbjct: 187 CRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGC 246

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + +N ++   C  G +  A+ + + M   +  P  +TY  +I G   A R++ A  
Sbjct: 247 SPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKAND 306

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F  M R G   N+  Y+AL+ G+C    +E ALE+L  M   G +  PNVVTYT VI  
Sbjct: 307 YFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGRE--PNVVTYTRVIGA 364

Query: 281 FCGKGMMKEALGILDRMEALG-----CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            C  G ++ A  + +  +A+G     C P+    ST+I   C +    EAY+   ++V  
Sbjct: 365 LCKGGQIERATKLFN--DAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVES 422

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             V+    Y ++   L   +  ++ E++  +  A G++
Sbjct: 423 KLVAKPHIYKAMADGLELVQETEKVERVCLEASAHGIE 460


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 195/381 (51%), Gaps = 10/381 (2%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVE-AYKEEGCVVSVKMMKVIFNLCEKARL 144
           LQ  +    ++++R  +++      +   ++++  Y  + C  +V M +    LC++ ++
Sbjct: 186 LQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHR----LCKEHKI 241

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            NEA  +  ++ +  LRP  + +N +I  +C+ G++     L + M    ++PD+ TY  
Sbjct: 242 -NEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSV 300

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C  G+L+DA  LF  M   G   N V ++ L++G C  G  +  +E+  +M ++G
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG 360

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               P+V+TY ++I   C  G ++EA  ++  M   G  P++ T + LI G C EG+L+ 
Sbjct: 361 --VKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLES 418

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A ++  ++V  G       +++L+    R  ++ EAE+   +ML +G+KPD    +++I 
Sbjct: 419 ALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIH 478

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             C  G V  GF L ++++  G +  V +  ++VLL GLC++     A  L   ML   +
Sbjct: 479 GFCKKGDVKTGFKLLKEMQCDGHVPGVVT--YNVLLNGLCKQGQMKNANMLLDAMLNLGV 536

Query: 445 WLQGPYVDKIVEHLKKSGDEE 465
                  + ++E   K G+ E
Sbjct: 537 VPDDITYNILLEGHCKHGNRE 557



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 137/272 (50%), Gaps = 10/272 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ +L ++A  +  +M +  L P+ + +  +I   C  G      E+ + M   
Sbjct: 301 LINGLCKEGQL-DDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRK 359

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ITY ++I G C  G L +A  L   M + G   +   Y+ L+DG C+ G +E A
Sbjct: 360 GVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESA 419

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           LE+  EM KEG +   + V +T++I  FC +G + EA   L  M   G  P+  T + +I
Sbjct: 420 LEIRKEMVKEGIEL--DNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC +G++   ++L+ ++   G V     Y+ L+  L +  ++K A  L   ML  GV 
Sbjct: 478 HGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVV 537

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           PD +  ++++   C  G         ED +K+
Sbjct: 538 PDDITYNILLEGHCKHGN-------REDFDKL 562


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 186/357 (52%), Gaps = 10/357 (2%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVE-AYKEEGCVVSVKMMKVIFNLCEKARL 144
           LQ  +    ++++R  +++      +   ++++  Y  + C  +V M +    LC++ ++
Sbjct: 186 LQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHR----LCKEHKI 241

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            NEA  +  ++ +  LRP  + +N +I  +C+ G++     L + M    ++PD+ TY  
Sbjct: 242 -NEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSV 300

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C  G+L+DA  LF  M   G   N V ++ L++G C  G  +  +E+  +M ++G
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG 360

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               P+V+TY ++I   C  G ++EA  ++  M   G  P++ T + LI G C EG+L+ 
Sbjct: 361 --VKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLES 418

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A ++  ++V  G       +++L+    R  ++ EAE+   +ML +G+KPD    +++I 
Sbjct: 419 ALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIH 478

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
             C  G V  GF L ++++  G +  V +  ++VLL GLC++     A  L   ML 
Sbjct: 479 GFCKKGDVKTGFKLLKEMQCDGHVPGVVT--YNVLLNGLCKQGQMKNANMLLDAMLN 533



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 130/250 (52%), Gaps = 3/250 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ +L ++A  +  +M +  L P+ + +  +I   C  G      E+ + M   
Sbjct: 301 LINGLCKEGQL-DDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRK 359

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ITY ++I G C  G L +A  L   M + G   +   Y+ L+DG C+ G +E A
Sbjct: 360 GVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESA 419

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           LE+  EM KEG +   + V +T++I  FC +G + EA   L  M   G  P+  T + +I
Sbjct: 420 LEIRKEMVKEGIEL--DNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC +G++   ++L+ ++   G V     Y+ L+  L +  ++K A  L   ML  GV 
Sbjct: 478 HGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVV 537

Query: 374 PDGLACSVMI 383
           PD +  ++++
Sbjct: 538 PDDITYNILL 547



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 129/267 (48%), Gaps = 4/267 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+  +  ++   C   ++ +A  LF  + + G    +V+++ L++G C+ G++++   L
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRL 282

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
              M +      P+V TY+ +I   C +G + +A  +   M   G  PN VT +TLI G 
Sbjct: 283 KRFMMEN--RVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGH 340

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           CV G  D   ++  +++  G       Y++L+  L +   L+EA+KL  +M   G+KPD 
Sbjct: 341 CVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDK 400

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
              +++I   C  G +     + +++ K G    +D+   + L+ G CR+   +EA +  
Sbjct: 401 FTYTMLIDGCCKEGDLESALEIRKEMVKEGI--ELDNVAFTALISGFCREGQVIEAERTL 458

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           R ML+  I         ++    K GD
Sbjct: 459 REMLEAGIKPDDATYTMVIHGFCKKGD 485



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 97/219 (44%), Gaps = 34/219 (15%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C   R A+  M + ++M    ++PD I YN +I   C+ GD+  A +L+ 
Sbjct: 331 VTFTTLINGHCVTGR-ADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVI 389

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    L PD  TY  +I G C  G LE A  + K M + G   + VA++AL+ G CR G
Sbjct: 390 EMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREG 449

Query: 249 SMERALELLGEMEKEG------------------GDCS---------------PNVVTYT 275
            +  A   L EM + G                  GD                 P VVTY 
Sbjct: 450 QVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYN 509

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            ++   C +G MK A  +LD M  LG  P+ +T + L++
Sbjct: 510 VLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 1/125 (0%)

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           E  KE   + +V    +I   C + ++  EA   LR+M E  ++PD   Y  VI  FC+K
Sbjct: 425 EMVKEGIELDNVAFTALISGFCREGQVI-EAERTLREMLEAGIKPDDATYTMVIHGFCKK 483

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           GD+    +L+K M      P ++TY  ++ G C  G++++A  L   M   G   + + Y
Sbjct: 484 GDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITY 543

Query: 238 SALLD 242
           + LL+
Sbjct: 544 NILLE 548


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 180/343 (52%), Gaps = 8/343 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  ++KQ     ++V++   ++ C   V    ++     K     +AM +L +M     
Sbjct: 227 CDSGKLKQ----AMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGS 282

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD + YN +I   C++G +  A + +  M      P++IT+  +++  C+ GR  DA  
Sbjct: 283 KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEK 342

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M R GC+ ++V ++ L++ +CR G + RA+++L +M   G  C+PN ++Y  ++  
Sbjct: 343 LLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG--CTPNSLSYNPLLHG 400

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +  M  A+  LD M + GC P+ VT +TL+   C +G +D A ++++++ + G    
Sbjct: 401 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 460

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++++  L +  + + A KL  +M   G+KPD +  S ++  L   G+V E    + 
Sbjct: 461 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFH 520

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           D+E +G   +  +  ++ ++LGLC+   +  A     +M+ KR
Sbjct: 521 DLEGLGIRPNAIT--YNSIMLGLCKSRQTDRAIDFLAYMISKR 561



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 150/282 (53%), Gaps = 9/282 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD I   ++IR FC  G    A  +M+ +      PD+ITY  +I G+C +G +++A   
Sbjct: 147 PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNA--- 203

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG-EMEKEGGDCSPNVVTYTSVIQI 280
            +V+ R   A ++V Y+ +L  +C  G +++A+E+L  +++KE   C P+V+TYT +I+ 
Sbjct: 204 LQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE---CYPDVITYTILIEA 260

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +  + +A+ +LD M   G  P+ VT + LI G C EG LDEA + ++ + + G   +
Sbjct: 261 TCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPN 320

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ ++  +  T R  +AEKL S ML  G  P  +  +++I  LC  G +     + E
Sbjct: 321 VITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILE 380

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +   G   + +S  ++ LL G C++     A +    M+ +
Sbjct: 381 KMPMHG--CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 420



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 142/258 (55%), Gaps = 7/258 (2%)

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           N +R     G++    + ++ M      PDII   S+I+GFC  G+ + A  + +++++ 
Sbjct: 119 NHLRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS 178

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   +++ Y+ L+ G C+ G ++ AL++L  M     + +P+VVTY ++++  C  G +K
Sbjct: 179 GAVPDVITYNVLISGYCKSGEIDNALQVLDRM-----NVAPDVVTYNTILRTLCDSGKLK 233

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A+ +LDR     C P+ +T + LI+  C E  + +A +L+D++   GS      Y+ L+
Sbjct: 234 QAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLI 293

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             + +  RL EA K  + M + G +P+ +  ++++R +C  G+ ++   L  D+ + G  
Sbjct: 294 NGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCS 353

Query: 409 SSVDSDIHSVLLLGLCRK 426
            SV +   ++L+  LCR+
Sbjct: 354 PSVVT--FNILINFLCRQ 369



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 135/262 (51%), Gaps = 2/262 (0%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  SV    ++ N   +  L   A+ +L KMP     P+++ YN ++  FC++  M  
Sbjct: 350 KGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR 409

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E +  M     YPDI+TY +++   C  G+++ A  +   +   GC+  L+ Y+ ++D
Sbjct: 410 AIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVID 469

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+ ++G  ERA++LL EM ++G    P+++TY+S++     +G + EA+     +E LG 
Sbjct: 470 GLSKVGKTERAIKLLDEMRRKG--LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGI 527

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN +T ++++ G C     D A   +  +++     +   Y+ L+  +      KEA  
Sbjct: 528 RPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALD 587

Query: 363 LFSKMLASGVKPDGLACSVMIR 384
           L +++ + G+     A  V ++
Sbjct: 588 LLNELCSRGLVKKSSAEQVAVK 609


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 179/368 (48%), Gaps = 9/368 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+M R+++     ID++    + GC   V     + +   K + + EA  + ++M
Sbjct: 27  LLNGLCKMGRLEE----AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 82

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               L  DT+ Y  +IR   + G +  A  + K M      PD++T  +MI G   AGR+
Sbjct: 83  ALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 142

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
             A  +FK M+  G A N V YSAL+ G+C+   M+ ALE+L +M+K    C+P+ +TY 
Sbjct: 143 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK--AFCTPDTITYN 200

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA-YQLIDKVVA 334
            +I   C  G ++ A    D M   GC P+  T + LI GFC  GN D A + L  +   
Sbjct: 201 VLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTI 260

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y+++V  L + K+++EA  L  K+ A+G  P     + ++  LC  G++ E
Sbjct: 261 NGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 320

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
              L   I   G   + D   ++ L+ GL ++  S EA KL + M  + + L       +
Sbjct: 321 AIDLLRKIVDNG--CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTAL 378

Query: 455 VEHLKKSG 462
           +  L ++G
Sbjct: 379 IRELLQTG 386



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 171/333 (51%), Gaps = 6/333 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KAR  + A+ +L +M +    PDTI YN +I   C+ GD+ AA      M   
Sbjct: 167 LIHGLC-KARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEA 225

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDAC-GLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
              PD+ TY  +I GFC AG  + A   L +    +GC  ++  Y+A++D + +   +E 
Sbjct: 226 GCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEE 285

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+ L+ ++   G  C+P + TY +++   C  G ++EA+ +L ++   GC P+ VT ++L
Sbjct: 286 AVALMEKITANG--CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 343

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G   E    EAY+L  ++   G      CY++L+ EL++T ++ +A  ++  M + G 
Sbjct: 344 IDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGC 403

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD +  S MI  L   G++     +++ +E  G   + +  ++S L+ GLC+      A
Sbjct: 404 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL--APNEVVYSALIHGLCKARKMDCA 461

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            ++   M K          + +++ L KSGD E
Sbjct: 462 LEMLAQMKKAFCTPDTITYNILIDGLCKSGDVE 494



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 150/310 (48%), Gaps = 5/310 (1%)

Query: 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR 161
           +  +I Q  S    V +     GCV  V  +  + +   KA     A+ + + M    L 
Sbjct: 103 QTGKIPQASS----VYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLA 158

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+ ++Y+ +I   C+   M  A E++  M      PD ITY  +I G C +G +E A   
Sbjct: 159 PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAF 218

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  M   GC  ++  Y+ L+ G C+ G+ + A   L +     G C+ ++ TYT+++   
Sbjct: 219 FDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTING-CTIDIHTYTAIVDWL 277

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
                ++EA+ +++++ A GC P   T + L+ G C  G L+EA  L+ K+V  G     
Sbjct: 278 AKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDV 337

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y+SL+  L + KR  EA KLF +M   G+  D +  + +IREL   G++ +   +Y+ 
Sbjct: 338 VTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKT 397

Query: 402 IEKIGFLSSV 411
           +   G +  V
Sbjct: 398 MTSHGCVPDV 407



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 137/276 (49%), Gaps = 6/276 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+M R+++     ID++    + GC   V     + +   K + + EA  + ++M
Sbjct: 308 LLNGLCKMGRLEE----AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 363

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               L  DT+ Y  +IR   + G +  A  + K M      PD++T  +MI G   AGR+
Sbjct: 364 ALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 423

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
             A  +FK M+  G A N V YSAL+ G+C+   M+ ALE+L +M+K    C+P+ +TY 
Sbjct: 424 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK--AFCTPDTITYN 481

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I   C  G ++ A    D M   GC P+  T + LI GFC  GN D A  + D + + 
Sbjct: 482 ILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSS 541

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
              ++   Y +L+  L + ++L +A   F  M   G
Sbjct: 542 RCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 140/301 (46%), Gaps = 49/301 (16%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           ++E+A  L + +  +GC   +  Y+ALL+G+C++G +E A++LL ++   G  C+P+VVT
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG--CTPDVVT 58

Query: 274 YTSVI--------------------------QIFCGKGMMKEAL---------GILDRME 298
           YTS+I                             C   +++E L          +   M 
Sbjct: 59  YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMT 118

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           + GC P+ VT+ST+I G    G +  A ++   + A G   +   YS+L+  L + +++ 
Sbjct: 119 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 178

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
            A ++ ++M  +   PD +  +V+I  LC  G V      ++++ + G     D   +++
Sbjct: 179 CALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAG--CKPDVYTYNI 236

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD-----KIVEHLKKSGD-EELITNLPK 472
           L+ G C+  ++      A   L +   + G  +D      IV+ L K+   EE +  + K
Sbjct: 237 LISGFCKAGNT----DAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEK 292

Query: 473 I 473
           I
Sbjct: 293 I 293


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 171/337 (50%), Gaps = 6/337 (1%)

Query: 128 SVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           SV    ++ N LC++ +L     +V   M    ++P+ + YN ++  +C  G + AAD +
Sbjct: 220 SVYTFNIMINVLCKEGKLKKAKDFV-GHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAI 278

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           +  M    + PD  TY S+I G C  GRLE+A  +F+ M + G   + V Y+ L+DG C 
Sbjct: 279 LTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCN 338

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G+++ A     EM K+G   SP + TY S+I     +    EA  ++  ++  G +P+ 
Sbjct: 339 KGNLDMASAYKDEMLKKG--ISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDA 396

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           +T + LI G+C   N  +A+ L D+++A G   +   Y+SL+  L +  R+KEA+ LF K
Sbjct: 397 ITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKK 456

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           + + GV PD +  + +I   C    V   F L +D++++      D    + ++ G CR+
Sbjct: 457 ITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKV--PPDEVTFNTIMQGHCRE 514

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
               EA +L   M ++ I       + ++    + GD
Sbjct: 515 GKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGD 551



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 159/313 (50%), Gaps = 13/313 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG--DMIAA--DELMKG 189
           +I  +C++ RL  EA  +  +M +  LRP  +IYN +I  FC KG  DM +A  DE++K 
Sbjct: 297 LISGMCKQGRL-EEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKK 355

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
                + P + TY S+I       R ++A  + K ++  G + + + Y+ L++G CR  +
Sbjct: 356 ----GISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCAN 411

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
            ++A  L  EM   G    P   TYTS++ +   K  MKEA  +  ++ + G  P+ +  
Sbjct: 412 AKKAFLLHDEMLASG--IKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMF 469

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           + LI G C   N+  A++L+  +           +++++    R  +++EA +LF +M  
Sbjct: 470 NALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKR 529

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            G+KPD ++ + +I      G + + F +  ++   GF  +V +  ++ L+ GLC+    
Sbjct: 530 RGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLT--YNALVQGLCKNQEG 587

Query: 430 VEAAKLARFMLKK 442
             A +L + M+ K
Sbjct: 588 DLAEELLKEMVSK 600



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 153/302 (50%), Gaps = 10/302 (3%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE----GCVVSVKMMKVIFNLCEK 141
           +Q   R S+ +YN   +    K N    +D+  AYK+E    G   ++     + +    
Sbjct: 318 VQKGLRPSAVIYNTLIDGFCNKGN----LDMASAYKDEMLKKGISPTMSTYNSLIHALFM 373

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
            +  +EA  +++++ E  + PD I YN +I  +C   +   A  L   M    + P   T
Sbjct: 374 EQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKT 433

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y S++       R+++A  LFK +   G   + + ++AL+DG C   +++ A ELL +M+
Sbjct: 434 YTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMD 493

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           +      P+ VT+ +++Q  C +G ++EA  + D M+  G  P+ ++ +TLI G+   G+
Sbjct: 494 R--MKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGD 551

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           + +A+++ ++++  G   +   Y++LV  L + +    AE+L  +M++ G+ PD      
Sbjct: 552 IKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFT 611

Query: 382 MI 383
           +I
Sbjct: 612 LI 613



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 135/268 (50%), Gaps = 16/268 (5%)

Query: 164 TIIYNNVIRLFCEKGDMIAADE------LMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           +I+++ +I+  C   DM  ADE       MK  G++   P I T  S++  F    R E 
Sbjct: 151 SIVFDYLIKSCC---DMNRADEAFECFYTMKEKGVL---PTIETCNSLLSLFLKLNRTEA 204

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  L+  M R    +++  ++ +++ +C+ G +++A + +G ME  G    PN+VTY ++
Sbjct: 205 AWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSG--VKPNIVTYNTI 262

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +  +C  G ++ A  IL  M+     P+  T  +LI G C +G L+EA ++ +++V  G 
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGL 322

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
             S   Y++L+        L  A     +ML  G+ P     + +I  L +  +  E  C
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAEC 382

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           + ++I++ G   S D+  +++L+ G CR
Sbjct: 383 MIKEIQEKGI--SPDAITYNILINGYCR 408



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 2/192 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G   + K    + ++  K     EA  + +K+    + PD I++N +I   C   ++  A
Sbjct: 426 GIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGA 485

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            EL+K M  + + PD +T+ ++++G C  G++E+A  LF  MKR G   + ++++ L+ G
Sbjct: 486 FELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISG 545

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
             R G ++ A  +  EM   G +  P V+TY +++Q  C       A  +L  M + G  
Sbjct: 546 YSRRGDIKDAFRVRNEMLDTGFN--PTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMT 603

Query: 304 PNRVTISTLIKG 315
           P+  T  TLI+G
Sbjct: 604 PDDTTYFTLIEG 615


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 175/360 (48%), Gaps = 13/360 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-----LCEKARLANEAMW 150
           + N  C+  R+     ++  +    +  G  VSV+   VI+N     LC+  R   E + 
Sbjct: 346 LINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGR-QQEGLG 404

Query: 151 VLRKM-PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
           ++ +M  +    PDTI YN +I  FC+ G++    EL   M    + P+++T  +++ G 
Sbjct: 405 LMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGM 464

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C  GR+  A   F   +R G   + V Y+AL++  C + + E+A+EL  EM K G  CSP
Sbjct: 465 CRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSG--CSP 522

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           + + Y ++I  F   G M +A  +L  ++ LG  P+ V  +TLI GFC        ++++
Sbjct: 523 DAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEML 582

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            ++   G       Y++L+    +   LK A+K+  KM+ +GV P       +I   CL 
Sbjct: 583 KEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLN 642

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449
           G   E   +++D++    +   ++ I+++L+  LC+ N    A  L   M   +IW   P
Sbjct: 643 GNGNEAMEIFKDMKAASKVPP-NTVIYNILINSLCKNNKVKSAVSLMEDM---KIWGVTP 698



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 175/360 (48%), Gaps = 13/360 (3%)

Query: 113 IIDVVEAYKEEGCVVSVKMM-KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           I+++V  + E G ++S   M ++I  LC + R  N    +  +M +     ++   N+++
Sbjct: 254 IVNLVLKFGEHGVLISSFWMGRLITRLC-RNRKTNRGWDLFTEMIKLGAVLESAACNSLL 312

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM---KRH 228
                +G+    +ELM+ M  +D+ P+++T+  +I   C   R++DA  + + M   K  
Sbjct: 313 TGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKES 372

Query: 229 G-----CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
           G        ++V Y+ L+DG+C++G  +  L L+  M  + G C+P+ +TY  +I  FC 
Sbjct: 373 GGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKG-CAPDTITYNCLIDGFCK 431

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G +++   + D M   G APN VT++TL+ G C  G +  A     +    G       
Sbjct: 432 AGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVT 491

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y++L+         ++A +LF++ML SG  PD +    +I      G++ +   +  +++
Sbjct: 492 YTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELK 551

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           K+G     D+  ++ L+ G CR N      ++ + M +  +       + ++ +  K+GD
Sbjct: 552 KLGIRP--DTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGD 609



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 2/200 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I    +  R+A +A +VL ++ +  +RPDT+ YN +I  FC         E++K M   
Sbjct: 530 LISGFSQAGRMA-DASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEA 588

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD ITY ++I      G L+ A  + + M + G    +  Y A+++  C  G+   A
Sbjct: 589 GLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEA 648

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +E+  +M K      PN V Y  +I   C    +K A+ +++ M+  G  PN  T + + 
Sbjct: 649 MEIFKDM-KAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIF 707

Query: 314 KGFCVEGNLDEAYQLIDKVV 333
           KG   E +L++ ++ +D+++
Sbjct: 708 KGLRDEKDLEKVFEFMDRMI 727



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 108/267 (40%), Gaps = 34/267 (12%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++ D + Y  +I  FC   +   A EL   M      PD I Y ++I GF  AGR+ DA 
Sbjct: 485 MKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADAS 544

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--------------- 264
            +   +K+ G   + V Y+ L+ G CR     R  E+L EME+ G               
Sbjct: 545 FVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYA 604

Query: 265 ---GDCS---------------PNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-CAPN 305
              GD                 P V TY +VI  +C  G   EA+ I   M+A     PN
Sbjct: 605 SKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPN 664

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  + LI   C    +  A  L++ +   G   +   Y+++   L   K L++  +   
Sbjct: 665 TVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMD 724

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQV 392
           +M+     PD +   ++   L   G++
Sbjct: 725 RMIEHACNPDYITMEILTEWLSAVGEI 751



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 99/191 (51%), Gaps = 7/191 (3%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L++M E  L+PDTI YN +I    + GD+  A ++M+ M    + P + TY ++I  +C
Sbjct: 581 MLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYC 640

Query: 211 NAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
             G   +A  +FK MK       N V Y+ L++ +C+   ++ A+ L+ +M+  G   +P
Sbjct: 641 LNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWG--VTP 698

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           N  TY ++ +    +  +++    +DRM    C P+ +T+  L +     G ++     +
Sbjct: 699 NTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIER----L 754

Query: 330 DKVVAGGSVSS 340
            K VAG  VSS
Sbjct: 755 KKFVAGCEVSS 765



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 145 ANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
            NEAM + + M     + P+T+IYN +I   C+   + +A  LM+ M +  + P+  TY 
Sbjct: 645 GNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYN 704

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           ++ KG  +   LE        M  H C  + +    L + +  +G +ER
Sbjct: 705 AIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIER 753



 Score = 38.9 bits (89), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 14/194 (7%)

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            FC      +   L+K  K       + A S LL    R   +E +L L  +++      
Sbjct: 131 AFCEPDSNANLSRLYKTSKELNIPLTVNAASFLLRASGRSELVEESLILFNDLDPS---- 186

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRM----EALGCAPNRVT----ISTLIKGFCVE 319
             N       + I    G +K+AL ++D M    +   C PN  T     S L+K    E
Sbjct: 187 VKNTYLRNVWLSILLRSGRVKDALKVIDEMFESNDDSNCRPNDATGDILFSFLLKRERNE 246

Query: 320 GNL--DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             L  DE   L+ K    G + S      L+  L R ++      LF++M+  G   +  
Sbjct: 247 ELLSEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESA 306

Query: 378 ACSVMIRELCLGGQ 391
           AC+ ++  L   G 
Sbjct: 307 ACNSLLTGLAREGN 320


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 168/307 (54%), Gaps = 10/307 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V +  ++   C + R++ +A+ ++ KM E   RPD + YN +I   C+   +  A +  K
Sbjct: 156 VTIGSLVNGFCRRNRVS-DAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFK 214

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +G   + P+++TY +++ G CN+GR  DA  L + M +     N++ YSALLD   + G
Sbjct: 215 EIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNG 274

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  A E+  EM +   D  P++VTY+S+I   C    + EA  + D M + GC P+ V+
Sbjct: 275 KVLEAKEIFEEMVRMSID--PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVS 332

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI GFC    +++  +L  K+   G V++   Y++L+    +   + +A++ FS+M 
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMD 392

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRK 426
           + GV PD    ++++  LC  G + +   ++ED++K    S +D DI  ++ ++ G+C K
Sbjct: 393 SFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQK----SEMDLDIVTYTTVIQGMC-K 447

Query: 427 NHSVEAA 433
              VE A
Sbjct: 448 TGKVEDA 454



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 157/318 (49%), Gaps = 4/318 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ VL KM +    PD +   +++  FC +  +  A  L+  M  I   PDI+ Y ++I 
Sbjct: 139 ALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIID 198

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             C   R+ DA   FK + R G   N+V Y+AL++G+C  G    A  LL +M K     
Sbjct: 199 SLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKR--KI 256

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +PNV+TY++++  F   G + EA  I + M  +   P+ VT S+LI G C+   +DEA Q
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 316

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           + D +V+ G       Y++L+    + KR+++  KLF KM   G+  + +  + +I+   
Sbjct: 317 MFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFF 376

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
             G V +    +  ++  G   S D   +++LL GLC      +A  +   M K  + L 
Sbjct: 377 QVGDVDKAQEFFSQMDSFGV--SPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLD 434

Query: 448 GPYVDKIVEHLKKSGDEE 465
                 +++ + K+G  E
Sbjct: 435 IVTYTTVIQGMCKTGKVE 452



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 171/341 (50%), Gaps = 23/341 (6%)

Query: 90  YRHSSFMYN----RACEMSRIKQNPSIIIDVVEAYKE---EGCVVSVKMMKVIFN-LCEK 141
           YR     YN      C+  R+        D ++ +KE   +G   +V     + N LC  
Sbjct: 186 YRPDIVAYNAIIDSLCKTRRVN-------DALDFFKEIGRKGIRPNVVTYTALVNGLCNS 238

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
            R  N+A  +LR M +  + P+ I Y+ ++  F + G ++ A E+ + M  + + PDI+T
Sbjct: 239 GRW-NDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVT 297

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y S+I G C   R+++A  +F +M   GC  ++V+Y+ L++G C+   +E  ++L  +M 
Sbjct: 298 YSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMS 357

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           + G     N VTY ++IQ F   G + +A     +M++ G +P+  T + L+ G C  G 
Sbjct: 358 QRG--LVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGL 415

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           L++A  + + +           Y++++  + +T ++++A  LF  +   G+KPD +  + 
Sbjct: 416 LEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTT 475

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           M+  LC  G   E   LY  +++ G + +      S+L LG
Sbjct: 476 MMSGLCTKGLQHEVEALYTKMKQEGLMKN-----DSMLCLG 511



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 154/333 (46%), Gaps = 8/333 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+ + R+M +    P  + +N ++    +         L K M ++ +  D+ T+  +
Sbjct: 67  HDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIV 126

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC   ++  A  +   M + G   + V   +L++G CR   +  A+ L+ +M + G 
Sbjct: 127 INCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG- 185

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P++V Y ++I   C    + +AL     +   G  PN VT + L+ G C  G  ++A
Sbjct: 186 -YRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDA 244

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L+  ++      +   YS+L+   V+  ++ EA+++F +M+   + PD +  S +I  
Sbjct: 245 ARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLING 304

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           LCL  ++ E   +++ +   G    V S  ++ L+ G C+     +  KL R M ++ + 
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCFPDVVS--YNTLINGFCKAKRVEDGMKLFRKMSQRGLV 362

Query: 446 LQGPYVDKIVEHLKKSGD----EELITNLPKIG 474
                 + +++   + GD    +E  + +   G
Sbjct: 363 NNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFG 395



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 116/231 (50%), Gaps = 4/231 (1%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L DA  LF+ M +     ++V ++ LL  I ++   +  + L  +ME  G     ++ T
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLG--IRNDLYT 122

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           +  VI  FC    +  AL +L +M  LG  P+RVTI +L+ GFC    + +A  L+DK+V
Sbjct: 123 FNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G       Y++++  L +T+R+ +A   F ++   G++P+ +  + ++  LC  G+  
Sbjct: 183 EIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWN 242

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +   L  D+ K     +V +  +S LL    +    +EA ++   M++  I
Sbjct: 243 DAARLLRDMIKRKITPNVIT--YSALLDAFVKNGKVLEAKEIFEEMVRMSI 291


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 180/343 (52%), Gaps = 8/343 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  ++KQ     ++V++   ++ C   V    ++     K     +AM +L +M     
Sbjct: 170 CDSGKLKQ----AMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGS 225

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD + YN +I   C++G +  A + +  M      P++IT+  +++  C+ GR  DA  
Sbjct: 226 KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEK 285

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M R GC+ ++V ++ L++ +CR G + RA+++L +M   G  C+PN ++Y  ++  
Sbjct: 286 LLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG--CTPNSLSYNPLLHG 343

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +  M  A+  LD M + GC P+ VT +TL+   C +G +D A ++++++ + G    
Sbjct: 344 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 403

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++++  L +  + + A KL  +M   G+KPD +  S ++  L   G+V E    + 
Sbjct: 404 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFH 463

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           D+E +G   +  +  ++ ++LGLC+   +  A     +M+ KR
Sbjct: 464 DLEGLGIRPNAIT--YNSIMLGLCKSRQTDRAIDFLAYMISKR 504



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 150/282 (53%), Gaps = 9/282 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD I   ++IR FC  G    A  +M+ +      PD+ITY  +I G+C +G +++A   
Sbjct: 90  PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNA--- 146

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG-EMEKEGGDCSPNVVTYTSVIQI 280
            +V+ R   A ++V Y+ +L  +C  G +++A+E+L  +++KE   C P+V+TYT +I+ 
Sbjct: 147 LQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE---CYPDVITYTILIEA 203

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +  + +A+ +LD M   G  P+ VT + LI G C EG LDEA + ++ + + G   +
Sbjct: 204 TCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPN 263

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ ++  +  T R  +AEKL S ML  G  P  +  +++I  LC  G +     + E
Sbjct: 264 VITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILE 323

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +   G   + +S  ++ LL G C++     A +    M+ +
Sbjct: 324 KMPMHG--CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 363



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 142/258 (55%), Gaps = 7/258 (2%)

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           N +R     G++    + ++ M      PDII   S+I+GFC  G+ + A  + +++++ 
Sbjct: 62  NHLRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS 121

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   +++ Y+ L+ G C+ G ++ AL++L  M     + +P+VVTY ++++  C  G +K
Sbjct: 122 GAVPDVITYNVLISGYCKSGEIDNALQVLDRM-----NVAPDVVTYNTILRTLCDSGKLK 176

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A+ +LDR     C P+ +T + LI+  C E  + +A +L+D++   GS      Y+ L+
Sbjct: 177 QAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLI 236

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             + +  RL EA K  + M + G +P+ +  ++++R +C  G+ ++   L  D+ + G  
Sbjct: 237 NGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCS 296

Query: 409 SSVDSDIHSVLLLGLCRK 426
            SV +   ++L+  LCR+
Sbjct: 297 PSVVT--FNILINFLCRQ 312



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 131/250 (52%), Gaps = 2/250 (0%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  SV    ++ N   +  L   A+ +L KMP     P+++ YN ++  FC++  M  
Sbjct: 293 KGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR 352

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E +  M     YPDI+TY +++   C  G+++ A  +   +   GC+  L+ Y+ ++D
Sbjct: 353 AIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVID 412

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+ ++G  ERA++LL EM ++G    P+++TY+S++     +G + EA+     +E LG 
Sbjct: 413 GLSKVGKTERAIKLLDEMRRKG--LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGI 470

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN +T ++++ G C     D A   +  +++     +   Y+ L+  +      KEA  
Sbjct: 471 RPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALD 530

Query: 363 LFSKMLASGV 372
           L +++ + G+
Sbjct: 531 LLNELCSRGL 540


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 179/396 (45%), Gaps = 37/396 (9%)

Query: 80  FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF-NL 138
           FF WA  Q  Y H +  YN   E+         +          GCV +      +  +L
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSL 62

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C+  R   EA  V R M      P+   Y+ +I   C    +  A EL+  M      P+
Sbjct: 63  CQAQRF-EEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPN 121

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++TY S++ G C  G+L++A  LF  M   GC  + V Y+ L+DG  + G M  A  L  
Sbjct: 122 VVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFE 181

Query: 259 EMEKEG---------------------------------GDCSPNVVTYTSVIQIFCGKG 285
           EM ++G                                   C PN+ T+ +++  FC  G
Sbjct: 182 EMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMG 241

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            M EA  +   M +LGC P+ V+ +TL++G C +G   EA +L+ +++  G       Y+
Sbjct: 242 DMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYN 301

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
            L+    ++  L  A KLF ++  SG++PD  + S +I  LC  G+V   F +++D+   
Sbjct: 302 ILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIAN 361

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           G  S+ D+ +   L++GLCR     E+ +L + M+K
Sbjct: 362 G--SAPDAAVVIPLVIGLCRGERLTESCELFQAMVK 395



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 161/318 (50%), Gaps = 14/318 (4%)

Query: 164 TIIYNNVIRLFCEKG---DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           T+ YN ++ +  + G    +      M G G +   P+  TY  +++  C A R E+A  
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCV---PNTYTYGYLLRSLCQAQRFEEARS 73

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +F+ M   GC+ N+ +YS L+ G+CR   ++ A ELL EM  +GG   PNVVTY S++  
Sbjct: 74  VFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEM-IDGGH-QPNVVTYGSLLSG 131

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +KEA+ +  RM   GC P+ V  + LI GF  +G++ EAY+L ++++  G + +
Sbjct: 132 LCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPT 191

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+SL+    R       + LF  ML  G  P+    + ++   C  G ++E   L+ 
Sbjct: 192 VFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFL 251

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           ++  +G    V S  ++ L+ G+C K    EA +L R M++  +       + +++   K
Sbjct: 252 EMRSLGCPPDVVS--YNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSK 309

Query: 461 SGDEE----LITNLPKIG 474
           SG  +    L   +PK G
Sbjct: 310 SGALDHAIKLFYEIPKSG 327



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 157/334 (47%), Gaps = 9/334 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+M ++K+     +D+       GC     +  V+ +   K     EA  +  +M E   
Sbjct: 133 CKMGKLKE----AVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGC 188

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P    YN+++  F  KG+      L K M      P+I T+ +++ GFC  G + +A  
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHR 248

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M+  GC  ++V+Y+ L+ G+C  G    A  LL EM + G    P++V+Y  +I  
Sbjct: 249 LFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSG--VGPDIVSYNILIDG 306

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +   G +  A+ +   +   G  P+  + ST+I   C  G +  A+ +   ++A GS   
Sbjct: 307 YSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPD 366

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
                 LV+ L R +RL E+ +LF  M+     P     ++++ +LC   +  +   ++ 
Sbjct: 367 AAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFH 426

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           ++ + GF  S D +I  V+L  L R++   EAA+
Sbjct: 427 ELTERGF--SPDVEISKVILETL-RRSDDKEAAE 457


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 180/400 (45%), Gaps = 44/400 (11%)

Query: 77  GIRFFIWAALQSSYRHSSFMYNRACEMSRI--KQNPSIIIDVVEAYKEEGCVVSVKMMKV 134
            ++FF W   Q  Y+HS F  N  C +S    K+      D+ + ++   C         
Sbjct: 115 AVKFFDWCTGQPGYKHSKFTCN--CLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYST 172

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           + N   KAR   +A  +L +M +  + P   +YN +I+  C+ G + +A    + M   +
Sbjct: 173 LINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR-N 231

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             P +ITY  ++   C + R+ DA  + + M   GCA N+V Y+ L++G C+LG+M+ A+
Sbjct: 232 CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAV 291

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL-- 312
            L  +M +    CSP+V TY  +I  +C +   ++   +L  M   GC PN +T +TL  
Sbjct: 292 VLFNQMLENS--CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 349

Query: 313 ---------------------------------IKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                                            I  FC  G LD AY+L   +   G + 
Sbjct: 350 SLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLP 409

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y+ ++    R  R+ +A +L  +M  +G  PD +  + ++  LC   QV E + +Y
Sbjct: 410 DIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVY 469

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           E +   G+   +D    S L+ GLC+     +A KL R M
Sbjct: 470 EVLRNGGYF--LDVVTCSTLIDGLCKSRRLDDAEKLLREM 507



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 177/376 (47%), Gaps = 41/376 (10%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +  C  SV    ++ + LC+ AR+++ ++ +L  M E    P+ + YN +I  FC+ G+M
Sbjct: 229 QRNCAPSVITYTILVDALCKSARISDASL-ILEDMIEAGCAPNVVTYNTLINGFCKLGNM 287

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L   M      PD+ TY  +I G+C   R +D   L + M ++GC  N + Y+ L
Sbjct: 288 DEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTL 347

Query: 241 LDGI-----------------------------------CRLGSMERALELLGEMEKEGG 265
           +D +                                   C++G ++ A EL   M   G 
Sbjct: 348 MDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRG- 406

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C P++ TY  +I   C    + +A  +L+RM   GC P+ VT ++++ G C    +DEA
Sbjct: 407 -CLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEA 465

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           Y++ + +  GG        S+L+  L +++RL +AEKL  +M  +G  PD +A +++I  
Sbjct: 466 YEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHG 525

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
            C   Q+ +    + ++   G + +V +  +S+++  LC+     +   L + ML++ + 
Sbjct: 526 FCKADQLDKSLAFFSEMLDKGCVPTVIT--YSIVIDKLCKSARVRDGCMLLKTMLERGVT 583

Query: 446 LQGPYVDKIVEHLKKS 461
                   +++ L KS
Sbjct: 584 PDAIVYTSVIDGLCKS 599



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 176/358 (49%), Gaps = 12/358 (3%)

Query: 86  LQSSYRHSSFMYN----RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141
           L++S     F YN      C+  R +    ++ ++V+   E   +    +M  +    + 
Sbjct: 298 LENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKY 357

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
               N A  +LR+    D +P    +N +I +FC+ G +  A EL + M      PDI T
Sbjct: 358 IDAFNLAQMMLRR----DCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYT 413

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  MI G C A R++DA  L + M   GC  ++V Y++++ G+C+   ++ A E+  E+ 
Sbjct: 414 YNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVY-EVL 472

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           + GG    +VVT +++I   C    + +A  +L  ME  G AP+ V  + LI GFC    
Sbjct: 473 RNGG-YFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQ 531

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           LD++     +++  G V +   YS ++ +L ++ R+++   L   ML  GV PD +  + 
Sbjct: 532 LDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTS 591

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +I  LC      E + LY+ +++ G   +V +  ++VL+  LC+ +   EA  L   M
Sbjct: 592 VIDGLCKSDSYDEAYELYKLMKQTGCAPTVVT--YNVLVDKLCKVSRLDEAIHLLEVM 647



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 156/321 (48%), Gaps = 2/321 (0%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           L+   + S F +N   +M        +  ++ +   + GC+  +    ++ +   +A   
Sbjct: 368 LRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRI 427

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A  +L +M E    PD + YN+++   C+   +  A E+ + +     + D++T  ++
Sbjct: 428 DDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTL 487

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C + RL+DA  L + M+R+G A ++VAY+ L+ G C+   ++++L    EM  +G 
Sbjct: 488 IDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKG- 546

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C P V+TY+ VI   C    +++   +L  M   G  P+ +  +++I G C   + DEA
Sbjct: 547 -CVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEA 605

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           Y+L   +   G   +   Y+ LV +L +  RL EA  L   M + G  PD +  + +   
Sbjct: 606 YELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDG 665

Query: 386 LCLGGQVLEGFCLYEDIEKIG 406
                +  + F L++ ++  G
Sbjct: 666 FWKSAEHDKAFRLFQAMKSRG 686



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 140/281 (49%), Gaps = 18/281 (6%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+ S++ +      +V E  +  G  + V     + +   K+R  ++A  +LR+M     
Sbjct: 457 CKASQVDE----AYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGS 512

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID------LYPDIITYVSMIKGFCNAGR 214
            PD + Y  +I  FC+      AD+L K +            P +ITY  +I   C + R
Sbjct: 513 APDVVAYTILIHGFCK------ADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSAR 566

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           + D C L K M   G   + + Y++++DG+C+  S + A EL   M++ G  C+P VVTY
Sbjct: 567 VRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTG--CAPTVVTY 624

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             ++   C    + EA+ +L+ ME+ GC P+ VT +++  GF      D+A++L   + +
Sbjct: 625 NVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKS 684

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            G   +   YS L+ +LV  +++ +A +++ + L +G   D
Sbjct: 685 RGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVD 725



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 3/169 (1%)

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           T   ++  F  K   +EA  +        C+P+ +T STLI GFC   +  +AY+L+D++
Sbjct: 134 TCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEM 193

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
              G V     Y++++  L    R+  A   +  M      P  +  ++++  LC   ++
Sbjct: 194 EKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRNCAPSVITYTILVDALCKSARI 252

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            +   + ED+ + G   +V +  ++ L+ G C+  +  EA  L   ML+
Sbjct: 253 SDASLILEDMIEAGCAPNVVT--YNTLINGFCKLGNMDEAVVLFNQMLE 299



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 3/141 (2%)

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G   ++ T + L+  F  +    EAY L      G        YS+L+    + +  ++A
Sbjct: 127 GYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQA 186

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +L  +M   G+ P     + +I+ LC  G+V      Y D+++    S +    +++L+
Sbjct: 187 YRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVI---TYTILV 243

Query: 421 LGLCRKNHSVEAAKLARFMLK 441
             LC+     +A+ +   M++
Sbjct: 244 DALCKSARISDASLILEDMIE 264


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 165/306 (53%), Gaps = 2/306 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +   EA  VL +M    + PD   Y+ +I   C+   +  A+++++ M   
Sbjct: 290 LIDGLCKSQKFL-EAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS 348

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD++ Y S+I  FC +G+L +A    + M++   + ++V Y+ ++DG+C+LG +  A
Sbjct: 349 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEA 408

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +L +M+ E GD  P+VVTY++VI   C   M+ EA  +LDRM   GC P+ VT +T+I
Sbjct: 409 QVILEQMQ-ESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTII 467

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G L+EA  L+  +   G   +   Y++L+  L + +++ EAE++  +M  +G  
Sbjct: 468 DGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCP 527

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  + M+  LC+ G++ E   L + ++      S D+  +  ++  L   +   EA 
Sbjct: 528 PNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAE 587

Query: 434 KLARFM 439
           +L   M
Sbjct: 588 QLLEQM 593



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 177/371 (47%), Gaps = 43/371 (11%)

Query: 74  SQMGIRFFIWA-ALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132
           +++ + FF WA A    + H++F +N                                ++
Sbjct: 56  AKLALAFFRWAPASIPGFSHTAFSWN-------------------------------SLL 84

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +V+   C+K R   EA  + R        PD   YN VI  FC  GD+ AA EL++ M  
Sbjct: 85  QVLVR-CKKHR---EAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKS 140

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               PD  T+  +I    NAG L+ A    + M   GC  N+V Y+AL+    R   +E 
Sbjct: 141 AGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAAFARAKKLEE 197

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A++LL EM + G  C PN+VTY  ++   C   M+  A  ++ +M   G APN +T ++L
Sbjct: 198 AMKLLEEMRERG--CPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSL 255

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           + GFC  GN+D+A +L+  +VA G   +   YS+L+  L ++++  EA+++  +M   GV
Sbjct: 256 VDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGV 315

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD    S +I  LC   ++ E   +   +   G   + D  ++S ++   C+    +EA
Sbjct: 316 TPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG--CTPDVVVYSSIIHAFCKSGKLLEA 373

Query: 433 AKLARFMLKKR 443
            K  + M K+R
Sbjct: 374 QKTLQEMRKQR 384



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 174/327 (53%), Gaps = 5/327 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + ++E  +E GC  ++    V+ +   K  +   A  V++KM E    P+ + +N+++  
Sbjct: 199 MKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDG 258

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC++G++  A +L+  M    + P+++TY ++I G C + +  +A  + + MK  G   +
Sbjct: 259 FCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPD 318

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              YSAL+ G+C+   +E A ++L  M   G  C+P+VV Y+S+I  FC  G + EA   
Sbjct: 319 AFTYSALIHGLCKADKIEEAEQMLRRM--AGSGCTPDVVVYSSIIHAFCKSGKLLEAQKT 376

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-SSGGCYSSLVVELV 352
           L  M     +P+ VT +T+I G C  G + EA  +++++   G V      YS+++  L 
Sbjct: 377 LQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLC 436

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           ++  L EA+KL  +M  +G  PD +  + +I  LC  G++ E   L + +++ G   +V 
Sbjct: 437 KSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVV 496

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +  ++ L+ GLC+     EA ++   M
Sbjct: 497 T--YTTLISGLCKARKVDEAERVMEEM 521



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 111/201 (55%), Gaps = 7/201 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS--VKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           C++ +I +   I+    E  +E G V+   V    VI  LC K+ +  EA  +L +M + 
Sbjct: 400 CKLGKIAEAQVIL----EQMQESGDVLPDVVTYSTVINGLC-KSDMLVEAQKLLDRMCKA 454

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
              PD + Y  +I   C+ G +  A+ L++GM      P+++TY ++I G C A ++++A
Sbjct: 455 GCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEA 514

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             + + M+  GC  NLV Y+ +++G+C  G ++ A +L+  M+    +CSP+  TY +++
Sbjct: 515 ERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIV 574

Query: 279 QIFCGKGMMKEALGILDRMEA 299
                  +++EA  +L++M++
Sbjct: 575 NALMSSDLVQEAEQLLEQMKS 595


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 179/340 (52%), Gaps = 8/340 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C   ++     +I  +VE   +   V    ++KV   +C+  + A  AM +LRKM
Sbjct: 183 LVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKV---MCKSGQTA-LAMELLRKM 238

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            E  ++ D + Y+ +I   C+ G +  A  L   M +     DII Y ++I+GFC AGR 
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           +D   L + M +     ++VA+SAL+D   + G +  A EL  EM + G   SP+ VTYT
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG--ISPDTVTYT 356

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           S+I  FC +  + +A  +LD M + GC PN  T + LI G+C    +D+  +L  K+   
Sbjct: 357 SLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR 416

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G V+    Y++L+       +L+ A++LF +M++  V+PD ++  +++  LC  G+  + 
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKA 476

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             ++E IEK      +D  I+++++ G+C  +   +A  L
Sbjct: 477 LEIFEKIEKSKM--ELDIGIYNIIIHGMCNASKVDDAWDL 514



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 157/312 (50%), Gaps = 5/312 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +VK   +I  LC+   L N A  +  +M     + D IIY  +IR FC  G      +L+
Sbjct: 247 AVKYSIIIDGLCKDGSLDN-AFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLL 305

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M    + PD++ + ++I  F   G+L +A  L K M + G + + V Y++L+DG C+ 
Sbjct: 306 RDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKE 365

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             +++A  +L  M  +G  C PN+ T+  +I  +C   ++ + L +  +M   G   + V
Sbjct: 366 NQLDKANHMLDLMVSKG--CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTV 423

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T +TLI+GFC  G L+ A +L  ++V+         Y  L+  L      ++A ++F K+
Sbjct: 424 TYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
             S ++ D    +++I  +C   +V + + L+  +   G    V +  +++++ GLC+K 
Sbjct: 484 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKT--YNIMIGGLCKKG 541

Query: 428 HSVEAAKLARFM 439
              EA  L R M
Sbjct: 542 SLSEADLLFRKM 553



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 165/337 (48%), Gaps = 5/337 (1%)

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP 162
           ++R KQ   +++D+ +  + +G   ++  + ++ N C + R  + A   + K+ +    P
Sbjct: 82  VARTKQY-DLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEP 140

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           DT+ ++ +I   C +G +  A EL+  M  +   P +IT  +++ G C  G++ DA  L 
Sbjct: 141 DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLI 200

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   N V Y  +L  +C+ G    A+ELL +ME+       + V Y+ +I   C
Sbjct: 201 DRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEER--KIKLDAVKYSIIIDGLC 258

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G +  A  + + ME  G   + +  +TLI+GFC  G  D+  +L+  ++         
Sbjct: 259 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            +S+L+   V+  +L+EAE+L  +M+  G+ PD +  + +I   C   Q+ +   + + +
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
              G   ++ +   ++L+ G C+ N   +  +L R M
Sbjct: 379 VSKGCGPNIRT--FNILINGYCKANLIDDGLELFRKM 413



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 156/307 (50%), Gaps = 19/307 (6%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  +++   ++ N   KA L ++ + + RKM    +  DT+ YN +I+ FCE G +  
Sbjct: 381 KGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEV 440

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A EL + M    + PDI++Y  ++ G C+ G  E A  +F+ +++     ++  Y+ ++ 
Sbjct: 441 AKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIH 500

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C    ++ A +L   +  +G    P+V TY  +I   C KG + EA  +  +ME  G 
Sbjct: 501 GMCNASKVDDAWDLFCSLPLKG--VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGH 558

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
           +PN  T + LI+    EG+  ++ +LI+++   G       +S      V    L+ A  
Sbjct: 559 SPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG-------FS------VDASTLRFALS 605

Query: 363 LFSKMLASGVKPDGLACSVMIRELCL--GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             ++ML +G +PD    + ++R  CL     V +   L+++++ +G+  +V +  ++ ++
Sbjct: 606 TLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVT--YNTVI 663

Query: 421 LGLCRKN 427
            GL   N
Sbjct: 664 KGLLNGN 670



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 126/248 (50%), Gaps = 4/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P +I +  +        + +    L K M+  G A NL   S +++  CR   +  A   
Sbjct: 70  PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSA 129

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           +G++ K G +  P+ VT++++I   C +G + EAL ++DRM  +G  P  +T++ L+ G 
Sbjct: 130 MGKIIKLGYE--PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGL 187

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C+ G + +A  LID++V  G   +   Y  ++  + ++ +   A +L  KM    +K D 
Sbjct: 188 CLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDA 247

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  S++I  LC  G +   F L+ ++E  GF    D  I++ L+ G C      + AKL 
Sbjct: 248 VKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF--KADIIIYTTLIRGFCYAGRWDDGAKLL 305

Query: 437 RFMLKKRI 444
           R M+K++I
Sbjct: 306 RDMIKRKI 313



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 112/274 (40%), Gaps = 61/274 (22%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           CE+ +++    +  ++V + +    +VS K++  +  LC+      +A+ +  K+ +  +
Sbjct: 433 CELGKLEVAKELFQEMV-SRRVRPDIVSYKIL--LDGLCDNGE-PEKALEIFEKIEKSKM 488

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
             D  IYN +I   C    +  A +L   + L  + PD+ TY  MI G C  G L +A  
Sbjct: 489 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADL 548

Query: 221 LFKVMKRHGCAANLVAY----------------SALLDGICRLG------SMERALELLG 258
           LF+ M+  G + N   Y                + L++ I R G      ++  AL  L 
Sbjct: 549 LFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLA 608

Query: 259 EMEKEGGDCS-----------------------------------PNVVTYTSVIQIFCG 283
            M K G +                                     PNVVTY +VI+    
Sbjct: 609 RMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLN 668

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M+ +  G+LD+M   GC PN VT ST I G C
Sbjct: 669 GNMISQVPGVLDQMFERGCQPNAVTKSTFISGLC 702



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           +DA  LF+ M R      L+ +S L   + R    +  L+L  +ME +G   + N+ T +
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKG--IAHNLYTLS 111

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I   C    +  A   + ++  LG  P+ VT STLI G C+EG               
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEG--------------- 156

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
                               R+ EA +L  +M+  G KP  +  + ++  LCL G+V + 
Sbjct: 157 --------------------RVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
             L + + + GF    +   +  +L  +C+   +  A +L R M +++I L       I+
Sbjct: 197 VLLIDRMVETGF--QPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254

Query: 456 EHLKKSGDEELITNL 470
           + L K G  +   NL
Sbjct: 255 DGLCKDGSLDNAFNL 269



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 27/189 (14%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--- 190
           +I  LC+K  L+ EA  + RKM E    P+   YN +IR    +GD   + +L++ +   
Sbjct: 533 MIGGLCKKGSLS-EADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRC 591

Query: 191 -----------GLIDLY--------PDIITYVSMIKGFC--NAGRLEDACGLFKVMKRHG 229
                       L  L         PD+ T+ ++++ FC      + DA  LFK MK  G
Sbjct: 592 GFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMG 651

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              N+V Y+ ++ G+     + +   +L +M + G  C PN VT ++ I   C + +   
Sbjct: 652 YKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERG--CQPNAVTKSTFISGLCKQDLHGS 709

Query: 290 ALGILDRME 298
           A+ +L +ME
Sbjct: 710 AILLLRKME 718



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 2/123 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFC--EKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           A+  L +M +    PD   +  ++R FC  E   +  A  L K M  +   P+++TY ++
Sbjct: 603 ALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTV 662

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           IKG  N   +    G+   M   GC  N V  S  + G+C+      A+ LL +ME +  
Sbjct: 663 IKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKMENDNE 722

Query: 266 DCS 268
           D +
Sbjct: 723 DVT 725


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 167/310 (53%), Gaps = 7/310 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R+ +EA  +L +M + D  PD  +YN +I   C+ G + AA  ++K M   
Sbjct: 98  LIHGLCQCQRI-DEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLER 156

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ITY S+I G C    L++A  L + MK  G   + VAY+ALL+G+C+   +E  
Sbjct: 157 SCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEV 216

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +LL EM + G +  P+  +Y +V+   C  G  +EA  IL++M    C P+ VT ++L+
Sbjct: 217 SKLLEEMVEAGRE--PDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLM 274

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC    +DEA +L++ +V      +   Y++L+    R  RL +A ++   M  +G+ 
Sbjct: 275 DGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGIS 334

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYED-IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           PD +  + ++  LC  G++ E   L E  +EK     + D   +S+L+ GLC+     +A
Sbjct: 335 PDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKD---CAPDVVTYSILVNGLCKLGKVDDA 391

Query: 433 AKLARFMLKK 442
             L   ML++
Sbjct: 392 RLLLEMMLER 401



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 188/380 (49%), Gaps = 45/380 (11%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+ +++++   ++ ++VEA +E     +     V+  LCE  +   EA  +L KM
Sbjct: 203 LLNGLCKQNQLEEVSKLLEEMVEAGREPD---TFSYNTVVACLCESGKY-EEAGKILEKM 258

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            E    PD + YN+++  FC+   M  A+ L++ M      P +ITY ++I GF  A RL
Sbjct: 259 IEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRL 318

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
            DA  + + M + G + +LV Y+ LLDG+C+ G +E A ELL  M ++  DC+P+VVTY+
Sbjct: 319 ADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEK--DCAPDVVTYS 376

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            ++   C  G + +A  +L+ M   GC PN VT +T+I GFC  G +DE +++++ +   
Sbjct: 377 ILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEV 436

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE- 394
                   YS+L+    +  R+++A  +       G+ PD  + S M+  LC  G+V E 
Sbjct: 437 SCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEA 490

Query: 395 ------------------------GFCLYEDIEKIGFLSSVDSD--------IHSVLLLG 422
                                   G C  E  ++   +  V S+         +S+L+ G
Sbjct: 491 QEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILING 550

Query: 423 LCRKNHSVEAAKLARFMLKK 442
           LC+     +A  +   ML+K
Sbjct: 551 LCKTKRVEDAINVLDVMLEK 570



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 163/318 (51%), Gaps = 4/318 (1%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +V++   E  CV  V     +   C +    +EA  ++ KM E  L PDT+ YN ++   
Sbjct: 148 NVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGL 207

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C++  +    +L++ M      PD  +Y +++   C +G+ E+A  + + M    C  ++
Sbjct: 208 CKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDV 267

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V Y++L+DG C++  M+ A  LL +M   G  C+P V+TYT++I  F     + +A  ++
Sbjct: 268 VTYNSLMDGFCKVSKMDEAERLLEDM--VGRRCAPTVITYTTLIGGFSRADRLADAYRVM 325

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           + M   G +P+ VT + L+ G C  G L+EA++L++ +V          YS LV  L + 
Sbjct: 326 EDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKL 385

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            ++ +A  L   ML  G +P+ +  + MI   C  G+V EG  + E ++++    + D  
Sbjct: 386 GKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVS--CTPDVV 443

Query: 415 IHSVLLLGLCRKNHSVEA 432
            +S L+ G C+ N   +A
Sbjct: 444 TYSTLIDGYCKANRMQDA 461



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 176/342 (51%), Gaps = 20/342 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++S++ +   ++ D+V       C  +V     +     +A    +A  V+  M +  +
Sbjct: 278 CKVSKMDEAERLLEDMVG----RRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGI 333

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD + YN ++   C+ G +  A EL++ M   D  PD++TY  ++ G C  G+++DA  
Sbjct: 334 SPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARL 393

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSME---RALELLGEMEKEGGDCSPNVVTYTSV 277
           L ++M   GC  NLV ++ ++DG C+ G ++   + LEL+ E+      C+P+VVTY+++
Sbjct: 394 LLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVS-----CTPDVVTYSTL 448

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I  +C    M++A  I      LG +P++ + S++++G C  G ++EA +++D +   G 
Sbjct: 449 IDGYCKANRMQDAFAI------LGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGC 502

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
             +   Y+ ++  L   +R  EA K+   M   G +P+    S++I  LC   +V +   
Sbjct: 503 PPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAIN 562

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + + + + G +  V +  ++ L+ G C+ N    A +  + M
Sbjct: 563 VLDVMLEKGCVPDVAT--YTSLIDGFCKINKMDAAYQCFKTM 602



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 146/279 (52%), Gaps = 10/279 (3%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++E   E+ C   V    ++ N LC+  ++ ++A  +L  M E   +P+ + +N +I  
Sbjct: 358 ELLEVMVEKDCAPDVVTYSILVNGLCKLGKV-DDARLLLEMMLERGCQPNLVTFNTMIDG 416

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+ G +    ++++ M  +   PD++TY ++I G+C A R++DA   F ++   G + +
Sbjct: 417 FCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDA---FAIL---GISPD 470

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
             +YS++L+G+C  G +E A E++  M K+G  C P    Y  +I   C      EAL +
Sbjct: 471 KASYSSMLEGLCSTGKVEEAQEVMDLMTKQG--CPPTSSHYALIIGGLCDVERGDEALKM 528

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L  M   GC PN  T S LI G C    +++A  ++D ++  G V     Y+SL+    +
Sbjct: 529 LQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCK 588

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
             ++  A + F  M  SG +PD LA +++I   C  G V
Sbjct: 589 INKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNV 627



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 141/293 (48%), Gaps = 12/293 (4%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + N  C++ ++     ++    E   E GC  ++     + +   KA   +E   VL 
Sbjct: 376 SILVNGLCKLGKVDDARLLL----EMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLE 431

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M E    PD + Y+ +I  +C+      A+ +     ++ + PD  +Y SM++G C+ G
Sbjct: 432 LMKEVSCTPDVVTYSTLIDGYCK------ANRMQDAFAILGISPDKASYSSMLEGLCSTG 485

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           ++E+A  +  +M + GC      Y+ ++ G+C +   + AL++L  M + G  C PN+ T
Sbjct: 486 KVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERG--CEPNLYT 543

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y+ +I   C    +++A+ +LD M   GC P+  T ++LI GFC    +D AYQ    + 
Sbjct: 544 YSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMR 603

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
             G       Y+ L+    ++  +++A ++   ML  G  PD      ++R L
Sbjct: 604 DSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 138/284 (48%), Gaps = 8/284 (2%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P    Y  +I  F   G+     E+   M      PD+IT+ +++K +C  G L+ A  
Sbjct: 21  KPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALS 80

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F+   +  C+     Y  L+ G+C+   ++ A +LL EM ++  DC P+   Y  +I  
Sbjct: 81  HFR--GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQK--DCHPDAAVYNCLIAG 136

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +  A  +L  M    C P+ +T ++LI G C    LDEA +L++K+   G    
Sbjct: 137 LCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPD 196

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE-GFCLY 399
              Y++L+  L +  +L+E  KL  +M+ +G +PD  + + ++  LC  G+  E G  L 
Sbjct: 197 TVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILE 256

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           + IEK       D   ++ L+ G C+ +   EA +L   M+ +R
Sbjct: 257 KMIEK---KCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRR 297



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 7/184 (3%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC--EKGDMIAADELMKGMGLIDL 195
           LC   ++  EA  V+  M +    P +  Y  +I   C  E+GD   A ++++ M     
Sbjct: 481 LCSTGKV-EEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGD--EALKMLQVMSERGC 537

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            P++ TY  +I G C   R+EDA  +  VM   GC  ++  Y++L+DG C++  M+ A +
Sbjct: 538 EPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQ 597

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               M   G  C P+ + Y  +I  FC  G +++A+ ++  M   GC P+  T  +L++ 
Sbjct: 598 CFKTMRDSG--CEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRS 655

Query: 316 FCVE 319
              E
Sbjct: 656 LTTE 659


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 165/311 (53%), Gaps = 4/311 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L  M +    PD   YN++I   C+ G++  A E++  M L D  P+ +TY ++I 
Sbjct: 335 ALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLIS 394

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             C   ++E+A  L +V+   G   ++  +++L+ G+C   +   A+EL  EM+ +G  C
Sbjct: 395 TLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKG--C 452

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+  TY  +I   C +G ++EAL +L  ME+ GC+ N VT +TLI GFC    ++EA +
Sbjct: 453 HPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEE 512

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           + D++   G   +   Y++L+  L + +R++EA +L  +ML  G+KPD    + ++   C
Sbjct: 513 IFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFC 572

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
             G + +   + + +   G     DS  +  L+LGL +      A++L R +  K + L 
Sbjct: 573 RAGDIKKAADIVQTMTSNG--CEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLA 630

Query: 448 GPYVDKIVEHL 458
               + +++ L
Sbjct: 631 PQTYNPVIKAL 641



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 152/298 (51%), Gaps = 9/298 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM +  +M      PD   YN +I   C +G +  A  L+K M       +++TY ++I 
Sbjct: 440 AMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLID 499

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC   R+E+A  +F  M+  G + N+V Y+ L+DG+C+   +E A +L+ +M  EG   
Sbjct: 500 GFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEG--L 557

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+  TY S++  FC  G +K+A  I+  M + GC P+ VT  TLI G    G ++ A +
Sbjct: 558 KPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASR 617

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+  V   G V +   Y+ ++  L R KR  EA +LF +M+  G  PD +   V+ R LC
Sbjct: 618 LLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLC 677

Query: 388 L-GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL--GLCRKNHSVEAAKLARFMLKK 442
             GG + E      ++   GFL     D  S L+L  GLC  +      KL   ++K+
Sbjct: 678 SGGGPIGEAVDFLVEMTDKGFL----PDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQ 731



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 174/361 (48%), Gaps = 40/361 (11%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC +A     A+ ++ +M  + L PD   +  +++ F E+G+M  A  + + M       
Sbjct: 221 LC-RAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPS 279

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
             +T   ++ G+C  GR+E+       M   G   +   +++L++G+CR+G ++ ALE+L
Sbjct: 280 SNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEIL 339

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M +EG D  P++ TY S+I   C  G ++EA+ IL++M     +PN VT +TLI   C
Sbjct: 340 DVMLQEGFD--PDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLC 397

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            E  ++EA +L   + + G +     ++SL+  L  T   + A +LF +M   G  PD  
Sbjct: 398 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEF 457

Query: 378 ACSVMIRELCLGGQV-------------------------LEGFC----------LYEDI 402
             +++I  LC  G++                         ++GFC          +++++
Sbjct: 458 TYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEM 517

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           E  G   +V +  ++ L+ GLC+     EAA+L   ML + +       + ++ +  ++G
Sbjct: 518 ELQGISRNVVT--YNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAG 575

Query: 463 D 463
           D
Sbjct: 576 D 576



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 203/443 (45%), Gaps = 32/443 (7%)

Query: 6   LSRILS-SSVNIKNSKIFALHFTTASPAERFYTHLQKN--PNNIEKTLATVKAKLDSTCV 62
            S+++S +S +  + +  +  F+T SP+    T L +N  P  +   L   + + D   +
Sbjct: 34  FSKLISFTSTHHHDQQAVSPSFSTLSPSPT--TQLPQNFTPKQLRDAL---RRQSDEDSI 88

Query: 63  IEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSI--IIDVVEAY 120
           +++L                WA+ Q ++  SS +Y     + ++ ++ S   +  V++  
Sbjct: 89  LDLLD---------------WASKQPNFVPSSVIYEEV--LRKLGKDGSFGSMRRVLQEM 131

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGD 179
           K  GC +      ++     K  L +EA+ V+  M E F L+ D   YN ++ +  +   
Sbjct: 132 KHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNK 191

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           +   + +   M    + PD+ T+  +IK  C A ++  A  + + M  +G + +   ++ 
Sbjct: 192 LKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTT 251

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+ G    G+M  AL +  +M   G  C  + VT   ++  +C +G ++E L  +D M  
Sbjct: 252 LMQGFIEEGNMNGALRIREQMVAAG--CPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSN 309

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  P+R T ++L+ G C  G++  A +++D ++  G       Y+SL+  L +   ++E
Sbjct: 310 EGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEE 369

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A ++ ++M+     P+ +  + +I  LC   QV E   L   +   G L  V +   + L
Sbjct: 370 AVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCT--FNSL 427

Query: 420 LLGLCRKNHSVEAAKLARFMLKK 442
           + GLC  N+   A +L   M  K
Sbjct: 428 IQGLCLTNNHRLAMELFEEMKTK 450



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 129/271 (47%), Gaps = 9/271 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  RI++   I  D +E       VV+   +  I  LC K R   EA  ++ +M    L
Sbjct: 502 CKNKRIEEAEEIF-DEMELQGISRNVVTYNTL--IDGLC-KNRRVEEAAQLMDQMLMEGL 557

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD   YN+++  FC  GD+  A ++++ M      PD +TY ++I G   AGR+E A  
Sbjct: 558 KPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASR 617

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L + ++  G       Y+ ++  + R      A+ L  EM ++G    P+ VTY  V + 
Sbjct: 618 LLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGD--PPDAVTYKVVFRG 675

Query: 281 FC-GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            C G G + EA+  L  M   G  P+  +   L +G C     D   +L+++V+   + S
Sbjct: 676 LCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQANFS 735

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
                 S+++  ++ ++ ++A     ++L+S
Sbjct: 736 DSEV--SMIMGFLKIRKFQDALATLGRILSS 764


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 151/288 (52%), Gaps = 17/288 (5%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + YN++I   C+      A +L++ M      PDI TY ++I GFC + + +DA  +
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F+ +   G   ++V YS L+DG+C+ G ++ A++L G M K G  C PN VTY S+I  F
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGS-CMPNTVTYNSLISGF 170

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G M EA+ +L+RM   G +P+ VT +TL+ GFC    LD+AY L++++   G   + 
Sbjct: 171 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNV 230

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             ++SL+  L R  RL +A  +  +M      P     +           +L+G+C    
Sbjct: 231 VTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT----------ILDGYCRVNQ 280

Query: 402 IEKIG--FLSSVDSDIH----SVLLLGLCRKNHSVEAAKLARFMLKKR 443
           +E+     L  +D   +    ++++ GLC+ N S EA +L     ++R
Sbjct: 281 LEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR 328



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 163/317 (51%), Gaps = 8/317 (2%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
            +V    +I  LC KA  A+EA  +L +M      PD   Y  +I  FC+      A  +
Sbjct: 53  TAVTYNSLISGLC-KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGIC 245
            + +      PD++TY  +I G C  GRL++A  LF  M + G C  N V Y++L+ G C
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           R+G M+ A+ LL  M + G   SP+VVTYT+++  FC    + +A  +L++M   G  PN
Sbjct: 172 RMGKMDEAMNLLERMAETGS--SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPN 229

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            VT ++L+ G C E  L +A  ++ ++       +   Y++++    R  +L+EA K   
Sbjct: 230 VVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFML 289

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           + +     P+ ++ ++MIR LC   +  E   L E+  +     + D  +++ ++  LCR
Sbjct: 290 EEM--DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARR--RRCNPDVVMYTTVIDVLCR 345

Query: 426 KNHSVEAAKLARFMLKK 442
           +    EA ++ R ML++
Sbjct: 346 EKKVDEACRVYRKMLEE 362



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 132/249 (53%), Gaps = 5/249 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ RL        R +      P+T+ YN++I  FC  G M  A  L++ M   
Sbjct: 130 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 189

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD++TY +++ GFC   RL+DA  L   M R G   N+V +++L+DG+CR   +  A
Sbjct: 190 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDA 249

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +LGEM ++   CSP V TY +++  +C    ++EA   +  +E + C PN V+ + +I
Sbjct: 250 VHILGEMRRKS--CSPTVYTYNTILDGYCRVNQLEEARKFM--LEEMDCPPNVVSFNIMI 305

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-GV 372
           +G C      EA +L+++            Y++++  L R K++ EA +++ KML   G 
Sbjct: 306 RGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGC 365

Query: 373 KPDGLACSV 381
            P+ +  S 
Sbjct: 366 LPNSITYST 374



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 110/214 (51%), Gaps = 11/214 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C M ++ +     ++++E   E G    V     + N  C+ ARL ++A  +L +M    
Sbjct: 171 CRMGKMDE----AMNLLERMAETGSSPDVVTYTTLMNGFCKLARL-DDAYDLLNQMTRKG 225

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L P+ + + +++   C +  +  A  ++  M      P + TY +++ G+C   +LE+A 
Sbjct: 226 LTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEAR 285

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
               +++   C  N+V+++ ++ G+C++     A+EL+ E  +    C+P+VV YT+VI 
Sbjct: 286 KF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRR--RCNPDVVMYTTVID 341

Query: 280 IFCGKGMMKEALGILDRM-EALGCAPNRVTISTL 312
           + C +  + EA  +  +M E  GC PN +T ST 
Sbjct: 342 VLCREKKVDEACRVYRKMLEEPGCLPNSITYSTF 375


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 181/383 (47%), Gaps = 35/383 (9%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           L+S    + F YN          N  + + + +  + +GC+ +V     + +   K R  
Sbjct: 197 LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKI 256

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++   +LR M    L P+ I YN VI   C +G M     ++  M       D +TY ++
Sbjct: 257 DDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTL 316

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG- 264
           IKG+C  G    A  +   M RHG   +++ Y++L+  +C+ G+M RA+E L +M   G 
Sbjct: 317 IKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376

Query: 265 --------------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALG 292
                                              SP+VVTY ++I   C  G M++A+ 
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIA 436

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L+ M+  G +P+ V+ ST++ GFC   ++DEA ++  ++V  G       YSSL+    
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
             +R KEA  L+ +ML  G+ PD    + +I   C+ G + +   L+ ++ + G L  V 
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV 556

Query: 413 SDIHSVLLLGLCRKNHSVEAAKL 435
           +  +SVL+ GL +++ + EA +L
Sbjct: 557 T--YSVLINGLNKQSRTREAKRL 577



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 166/350 (47%), Gaps = 59/350 (16%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           +    +I ++C KA   N AM  L +M    L P+   Y  ++  F +KG M  A  +++
Sbjct: 346 ITYTSLIHSMC-KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLR 404

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P ++TY ++I G C  G++EDA  + + MK  G + ++V+YS +L G CR  
Sbjct: 405 EMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSY 464

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ AL +  EM ++G    P+ +TY+S+IQ FC +   KEA  + + M  +G  P+  T
Sbjct: 465 DVDEALRVKREMVEKG--IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT 522

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL----- 363
            + LI  +C+EG+L++A QL +++V  G +     YS L+  L +  R +EA++L     
Sbjct: 523 YTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLF 582

Query: 364 ---------------------------------------------FSKMLASGVKPDGLA 378
                                                        F  ML    KPDG A
Sbjct: 583 YEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTA 642

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
            ++MI   C  G + + + LY+++ K GFL      +H+V ++ L +  H
Sbjct: 643 YNIMIHGHCRAGDIRKAYTLYKEMVKSGFL------LHTVTVIALVKALH 686



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 155/294 (52%), Gaps = 4/294 (1%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           V ++M E  + P+   YN +IR FC  G++  A  L   M      P+++TY ++I G+C
Sbjct: 192 VFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYC 251

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
              +++D   L + M   G   NL++Y+ +++G+CR G M+    +L EM + G   S +
Sbjct: 252 KLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG--YSLD 309

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
            VTY ++I+ +C +G   +AL +   M   G  P+ +T ++LI   C  GN++ A + +D
Sbjct: 310 EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLD 369

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G   +   Y++LV    +   + EA ++  +M  +G  P  +  + +I   C+ G
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTG 429

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           ++ +   + ED+++ G    V S  +S +L G CR     EA ++ R M++K I
Sbjct: 430 KMEDAIAVLEDMKEKGLSPDVVS--YSTVLSGFCRSYDVDEALRVKREMVEKGI 481



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 133/263 (50%), Gaps = 17/263 (6%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A+ VL  M E  L PD + Y+ V+  FC   D+  A  + + M    + PD ITY S+I
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +GFC   R ++AC L++ M R G   +   Y+AL++  C  G +E+AL+L  EM ++G  
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKG-- 550

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI------------- 313
             P+VVTY+ +I     +   +EA  +L ++      P+ VT  TLI             
Sbjct: 551 VLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVS 610

Query: 314 --KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
             KGFC++G + EA Q+ + ++       G  Y+ ++    R   +++A  L+ +M+ SG
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670

Query: 372 VKPDGLACSVMIRELCLGGQVLE 394
                +    +++ L   G+V E
Sbjct: 671 FLLHTVTVIALVKALHKEGKVNE 693



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 130/272 (47%), Gaps = 17/272 (6%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I V+E  KE+G    V     + +   ++   +EA+ V R+M E  ++PDTI Y+++I+ 
Sbjct: 435 IAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQG 494

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FCE+     A +L + M  + L PD  TY ++I  +C  G LE A  L   M   G   +
Sbjct: 495 FCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPD 554

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY---------------TSVI 278
           +V YS L++G+ +      A  LL ++  E  +  P+ VTY                S+I
Sbjct: 555 VVTYSVLINGLNKQSRTREAKRLLLKLFYE--ESVPSDVTYHTLIENCSNIEFKSVVSLI 612

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
           + FC KGMM EA  + + M      P+    + +I G C  G++ +AY L  ++V  G +
Sbjct: 613 KGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFL 672

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
                  +LV  L +  ++ E   +   +L S
Sbjct: 673 LHTVTVIALVKALHKEGKVNELNSVIVHVLRS 704


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 171/334 (51%), Gaps = 8/334 (2%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           S+  + I+FF WA  Q  Y+H    YN   ++     +      V +     GC  ++  
Sbjct: 5   SRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVT 64

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
            K++     KA  A  A+  LR + EF + PD  I+N +I    + G+   A +L + M 
Sbjct: 65  FKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENME 124

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG--CAANLVAYSALLD-GICRLG 248
              + PDI TY ++I G C +G LE A  L + M R G   A ++V Y+ L++ GIC+ G
Sbjct: 125 SSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDG 184

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E ALE+L  M+  G   +P+V+TY S+I   C  G + EA  IL  M    C+P+ VT
Sbjct: 185 DVEEALEILDGMKLAGP--APDVITYNSIIHALCVAGRVVEAAEILKTMS---CSPDLVT 239

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TL+ GFC  G L  A ++++++     +     Y+ LV  L R  +++ A  L  +++
Sbjct: 240 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 299

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
             G  PD +A + ++  LC  G++ E   L +++
Sbjct: 300 RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEM 333



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 155/317 (48%), Gaps = 46/317 (14%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   R+  EA  +L+ M      PD + +N ++  FC+ G +  A E+++ M   
Sbjct: 211 IIHALCVAGRVV-EAAEILKTMS---CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRE 266

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ PD+ITY  ++ G C  G+++ A  L + + R G   +++AY++L+DG+C+ G +E A
Sbjct: 267 NILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEA 326

Query: 254 LELLGEMEKE----------------------GG---DCS-----------------PNV 271
            +L+ EM                         GG   D S                 P+V
Sbjct: 327 HKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDV 386

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           VTY ++I   C    ++EA  + D M +LGC PN VT+ +++ G C  G +D+A+ L+ +
Sbjct: 387 VTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVE 446

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +       +   Y+SL+  L ++ R+ +A  +   M   GV  D  A   +I  +  GG+
Sbjct: 447 MSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGR 506

Query: 392 VLEGFCLYEDIEKIGFL 408
           V E   +Y+++   GFL
Sbjct: 507 VAEAMAMYDEMVARGFL 523


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 150/275 (54%), Gaps = 4/275 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   +N +I    +KG +++A EL+  M      P++ITY  +I GFC  GRLE+A  
Sbjct: 374 EPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAE 433

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +   M   G + N V Y+ L+  +C+ G++E AL+L GEM  +G  C P++ T+ S+I  
Sbjct: 434 IVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKG--CKPDIYTFNSLING 491

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C    M+EAL +   M   G   N VT +TL+  F +  ++ +A++L+D+++  G    
Sbjct: 492 LCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLD 551

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ L+  L +T  +++   LF +ML  G+ P  ++C+++I  LC  G+V +     +
Sbjct: 552 NITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQ 611

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           D+   G   + D   ++ L+ GLC+  H  EA+ L
Sbjct: 612 DMIHRGL--TPDIVTYNSLINGLCKMGHVQEASNL 644



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 165/352 (46%), Gaps = 36/352 (10%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A  +LR M +    P+++IY  +I   CE   +  A +L++ M L+   PD+ T+  +
Sbjct: 222 DSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDV 281

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME---- 261
           I G C AGR+ +A  L   M   G + + + Y  L+ G+CR+G ++ A  LL ++     
Sbjct: 282 IHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNT 341

Query: 262 ----------------KEGGDC----------SPNVVTYTSVIQIFCGKGMMKEALGILD 295
                           +E  D            P+  T+  +I     KG +  AL +L+
Sbjct: 342 VLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLN 401

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M A    PN +T + LI GFC +G L+EA ++++ + A G   +   Y+ L+  L +  
Sbjct: 402 EMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDG 461

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV--DS 413
            ++EA +LF +M   G KPD    + +I  LC   ++ E   LY D+    FL  V  ++
Sbjct: 462 NIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDM----FLEGVIANT 517

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
             ++ L+     ++   +A KL   ML +   L     + +++ L K+G  E
Sbjct: 518 VTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVE 569



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 141/278 (50%), Gaps = 5/278 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C++ RL  EA  ++  M    L  +T+ YN +I   C+ G++  A +L   M   
Sbjct: 418 LINGFCKQGRL-EEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGK 476

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PDI T+ S+I G C   ++E+A  L+  M   G  AN V Y+ L+       S+++A
Sbjct: 477 GCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQA 536

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L+ EM   G  C  + +TY  +I+  C  G +++ LG+ + M   G  P  ++ + LI
Sbjct: 537 FKLVDEMLFRG--CPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILI 594

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G +++A + +  ++  G       Y+SL+  L +   ++EA  LF+K+ + G++
Sbjct: 595 SGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIR 654

Query: 374 PDGLACSVMIRELCLGGQVLEG-FCLYEDIEKIGFLSS 410
           PD +  + +I   C  G   +    LY+ ++  GF+ +
Sbjct: 655 PDAITYNTLISRHCHEGMFNDACLLLYKGVDS-GFIPN 691



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 181/402 (45%), Gaps = 18/402 (4%)

Query: 70  FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP----SIIIDVVEAYKEEGC 125
            P      +  F  A  Q  Y H+      AC +   K        +I  +++  K+EG 
Sbjct: 75  LPLDIPTSMELFQRAGAQKGYSHTF----DACYLLIDKLGAVGDFKVIEKLLKQMKDEGL 130

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           +    +  +I     KA L  +A  +L  M   +   P    YN V+ +  +      A 
Sbjct: 131 LFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAP 190

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            +   M    + P + T+  ++K  C    ++ AC L + M +HGC  N V Y  L+  +
Sbjct: 191 NVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHAL 250

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C    +  AL+LL +M      C P+V T+  VI   C  G + EA  +LDRM   G + 
Sbjct: 251 CENNRVSEALQLLEDMFLMC--CEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFST 308

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK-L 363
           + +T   L+ G C  G +DEA  L++K+    +V     Y++L+   V + R +EA+  L
Sbjct: 309 DALTYGYLMHGLCRMGQVDEARALLNKIPNPNTV----LYNTLISGYVASGRFEEAKDLL 364

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           ++ M+ +G +PD    ++MI  L   G ++    L  ++    F  +V +  +++L+ G 
Sbjct: 365 YNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVIT--YTILINGF 422

Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           C++    EAA++   M  K + L     + ++  L K G+ E
Sbjct: 423 CKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIE 464



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 144/291 (49%), Gaps = 7/291 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V+  Y+ +    ++    +I  L +K  L + A+ +L +M      P+ I Y  +I  FC
Sbjct: 369 VIAGYEPDAYTFNI----MIDGLVKKGYLVS-ALELLNEMVAKRFEPNVITYTILINGFC 423

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G +  A E++  M    L  + + Y  +I   C  G +E+A  LF  M   GC  ++ 
Sbjct: 424 KQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIY 483

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            +++L++G+C+   ME AL L  +M  EG     N VTY +++  F  +  +++A  ++D
Sbjct: 484 TFNSLINGLCKNHKMEEALSLYHDMFLEG--VIANTVTYNTLVHAFLMRDSIQQAFKLVD 541

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   GC  + +T + LIK  C  G +++   L ++++  G   +    + L+  L RT 
Sbjct: 542 EMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTG 601

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++ +A K    M+  G+ PD +  + +I  LC  G V E   L+  ++  G
Sbjct: 602 KVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEG 652



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 4/232 (1%)

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC   +     + N LC+  ++  EA+ +   M    +  +T+ YN ++  F  +  + 
Sbjct: 476 KGCKPDIYTFNSLINGLCKNHKM-EEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQ 534

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L+  M       D ITY  +IK  C  G +E   GLF+ M   G    +++ + L+
Sbjct: 535 QAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILI 594

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G+CR G +  AL+ L +M   G   +P++VTY S+I   C  G ++EA  + +++++ G
Sbjct: 595 SGLCRTGKVNDALKFLQDMIHRG--LTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEG 652

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
             P+ +T +TLI   C EG  ++A  L+ K V  G + +   +S L+  +V+
Sbjct: 653 IRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVK 704



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 13/179 (7%)

Query: 80  FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM-KVIF-- 136
           F +  ++Q +++    M  R C +  I  N  I         E+G  +  +M+ K IF  
Sbjct: 527 FLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPT 586

Query: 137 ---------NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
                     LC   ++ N+A+  L+ M    L PD + YN++I   C+ G +  A  L 
Sbjct: 587 IISCNILISGLCRTGKV-NDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLF 645

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
             +    + PD ITY ++I   C+ G   DAC L       G   N V +S L++ I +
Sbjct: 646 NKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVK 704


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 157/316 (49%), Gaps = 23/316 (7%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+T+ YN +I  +C+   + AA EL   M    + P+++T  +++ G C  GR+  A   
Sbjct: 414 PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEF 473

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  M+  G   N V Y+AL+   C + ++E+A+EL  EM + G  CSP+ + Y ++I   
Sbjct: 474 FNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAG--CSPDAIVYYTLISGL 531

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
              G +  A  +L +M+  G +P+ V+ + LI GFC +  LDEAY+++ ++   G    G
Sbjct: 532 SQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDG 591

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++L+    +T     A +L  KM+  G+ P  +    +I   CL G + E   ++ D
Sbjct: 592 VTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRD 651

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM------------------LKKR 443
           +     +   ++ I+++L+  LCRKN    A  L   M                  L+++
Sbjct: 652 MSSTSKVPP-NTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEK 710

Query: 444 IWLQGPY--VDKIVEH 457
            WL   +  +D++ EH
Sbjct: 711 NWLSKAFELMDRMTEH 726



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/499 (23%), Positives = 214/499 (42%), Gaps = 87/499 (17%)

Query: 33  ERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEV-----LHRCFPSQSQMGIRFFIWAALQ 87
           E  + H  + PN+  K L   K        + V     L RCF  ++QM    F+     
Sbjct: 127 EAVFEHASREPNSHNKLLDLFKTSKSHKIPLSVNAATLLIRCF-GRAQMVDESFL----- 180

Query: 88  SSYRHSSFMYNRACEMSRIKQNPSIIIDVV--EAYKEEGCVVSVKMMK------------ 133
                   +YN  C   R+    +I+IDV+  +   ++   +  +M++            
Sbjct: 181 --------VYNELCPSRRLTHIRNILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTG 232

Query: 134 -VIFNLCEK------ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
            ++F+   K      A    E + ++ K  E ++ P++I    +I   C  G    A ++
Sbjct: 233 HIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDV 292

Query: 187 MKG-----------------------------------MGLIDLYPDIITYVSMIKGFCN 211
           + G                                   M  +D+ P+++T+  +I   C 
Sbjct: 293 LHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCK 352

Query: 212 AGRLEDACGLFKVMKRHGCAAN-------LVAYSALLDGICRLGSMERALELLGEMEKEG 264
             R+++A  +F+ M  +G  +N       ++ Y+ L+DG+C++G  E  L L+  M  + 
Sbjct: 353 FRRVDEALEVFEKM--NGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQP 410

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
             C PN VTY  +I  +C   M++ A  + D+M   G  PN VT++TL+ G C  G ++ 
Sbjct: 411 -RCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRING 469

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A +  +++   G   +   Y++L+        +++A +LF +ML +G  PD +    +I 
Sbjct: 470 AVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLIS 529

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            L   G++     +   +++ GF   + S   +VL+ G CRKN   EA ++ + M    I
Sbjct: 530 GLSQAGKLDRASFVLSKMKEAGFSPDIVS--FNVLINGFCRKNKLDEAYEMLKEMENAGI 587

Query: 445 WLQGPYVDKIVEHLKKSGD 463
              G   + ++ H  K+GD
Sbjct: 588 KPDGVTYNTLISHFSKTGD 606



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 129/298 (43%), Gaps = 35/298 (11%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V +  ++  +C+  R+ N A+    +M    L+ + + Y  +IR FC   ++  A EL  
Sbjct: 452 VTLNTLVDGMCKHGRI-NGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFD 510

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      PD I Y ++I G   AG+L+ A  +   MK  G + ++V+++ L++G CR  
Sbjct: 511 EMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKN 570

Query: 249 SMERALELLGEMEKEG------------------GDCS---------------PNVVTYT 275
            ++ A E+L EME  G                  GD S               P VVTY 
Sbjct: 571 KLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYG 630

Query: 276 SVIQIFCGKGMMKEALGILDRMEALG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           ++I  +C  G + EA+ I   M +     PN V  + LI   C +  +D A  L+D +  
Sbjct: 631 ALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKV 690

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            G   +   ++++   L     L +A +L  +M      PD +   ++   L   G+ 
Sbjct: 691 KGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGET 748



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 5/233 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C ++ I++   +  +++EA    GC     +   + +   +A   + A +VL KM E   
Sbjct: 497 CNVNNIEKAMELFDEMLEA----GCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGF 552

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD + +N +I  FC K  +  A E++K M    + PD +TY ++I  F   G    A  
Sbjct: 553 SPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHR 612

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L K M + G    +V Y AL+   C  G+++ A+++  +M        PN V Y  +I  
Sbjct: 613 LMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTS-KVPPNTVIYNILINS 671

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
            C K  +  AL ++D M+  G  PN  T + + KG   +  L +A++L+D++ 
Sbjct: 672 LCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMT 724


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 158/288 (54%), Gaps = 4/288 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM +LRKM E  ++ D + Y+ +I   C+ G +  A  L   M +     DII Y ++I+
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIR 290

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC AGR +D   L + M +     ++VA+SAL+D   + G +  A EL  EM + G   
Sbjct: 291 GFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG--I 348

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+ VTYTS+I  FC +  + +A  +LD M + GC PN  T + LI G+C    +D+  +
Sbjct: 349 SPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLE 408

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  K+   G V+    Y++L+       +L+ A++LF +M++  V+PD ++  +++  LC
Sbjct: 409 LFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLC 468

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             G+  +   ++E IEK      +D  I+++++ G+C  +   +A  L
Sbjct: 469 DNGEPEKALEIFEKIEKSKM--ELDIGIYNIIIHGMCNASKVDDAWDL 514



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 150/302 (49%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R  ++   +LR M +  + PD + ++ +I  F ++G +  A+EL K M   
Sbjct: 288 LIRGFCYAGRW-DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQR 346

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD +TY S+I GFC   +L+ A  +  +M   GC  N+  ++ L++G C+   ++  
Sbjct: 347 GISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDG 406

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           LEL  +M   G     + VTY ++IQ FC  G ++ A  +   M +    P+ V+   L+
Sbjct: 407 LELFRKMSLRG--VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILL 464

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G  ++A ++ +K+         G Y+ ++  +    ++ +A  LF  +   GVK
Sbjct: 465 DGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 524

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD    ++MI  LC  G + E   L+  +E+ G   S +   +++L+     +  + ++A
Sbjct: 525 PDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG--HSPNGCTYNILIRAHLGEGDATKSA 582

Query: 434 KL 435
           KL
Sbjct: 583 KL 584



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 157/312 (50%), Gaps = 5/312 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +VK   +I  LC+   L N A  +  +M     + D IIY  +IR FC  G      +L+
Sbjct: 247 AVKYSIIIDGLCKDGSLDN-AFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLL 305

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M    + PD++ + ++I  F   G+L +A  L K M + G + + V Y++L+DG C+ 
Sbjct: 306 RDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKE 365

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             +++A  +L  M  +G  C PN+ T+  +I  +C   ++ + L +  +M   G   + V
Sbjct: 366 NQLDKANHMLDLMVSKG--CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTV 423

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T +TLI+GFC  G L+ A +L  ++V+         Y  L+  L      ++A ++F K+
Sbjct: 424 TYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
             S ++ D    +++I  +C   +V + + L+  +   G    V +  +++++ GLC+K 
Sbjct: 484 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKT--YNIMIGGLCKKG 541

Query: 428 HSVEAAKLARFM 439
              EA  L R M
Sbjct: 542 SLSEADLLFRKM 553



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 165/337 (48%), Gaps = 5/337 (1%)

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP 162
           ++R KQ   +++D+ +  + +G   ++  + ++ N C + R  + A   + K+ +    P
Sbjct: 82  VARTKQY-DLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEP 140

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           DT+ ++ +I   C +G +  A EL+  M  +   P +IT  +++ G C  G++ DA  L 
Sbjct: 141 DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLI 200

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   N V Y  +L  +C+ G    A+ELL +ME+       + V Y+ +I   C
Sbjct: 201 DRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEER--KIKLDAVKYSIIIDGLC 258

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G +  A  + + ME  G   + +  +TLI+GFC  G  D+  +L+  ++         
Sbjct: 259 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            +S+L+   V+  +L+EAE+L  +M+  G+ PD +  + +I   C   Q+ +   + + +
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
              G   ++ +   ++L+ G C+ N   +  +L R M
Sbjct: 379 VSKGCGPNIRT--FNILINGYCKANLIDDGLELFRKM 413



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  + ++M +  + PDT+ Y ++I  FC++  +  A+ ++  M      P+I T+  +I
Sbjct: 335 EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILI 394

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C A  ++D   LF+ M   G  A+ V Y+ L+ G C LG +E A EL  EM      
Sbjct: 395 NGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR--R 452

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P++V+Y  ++   C  G  ++AL I +++E      +    + +I G C    +D+A+
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 512

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L   +   G       Y+ ++  L +   L EA+ LF KM   G  P+G   +++IR  
Sbjct: 513 DLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAH 572

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDS 413
              G   +   L E+I++ GF  SVD+
Sbjct: 573 LGEGDATKSAKLIEEIKRCGF--SVDA 597



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 126/248 (50%), Gaps = 4/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P +I +  +        + +    L K M+  G A NL   S +++  CR   +  A   
Sbjct: 70  PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSA 129

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           +G++ K G +  P+ VT++++I   C +G + EAL ++DRM  +G  P  +T++ L+ G 
Sbjct: 130 MGKIIKLGYE--PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGL 187

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C+ G + +A  LID++V  G   +   Y  ++  + ++ +   A +L  KM    +K D 
Sbjct: 188 CLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDA 247

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  S++I  LC  G +   F L+ ++E  GF    D  I++ L+ G C      + AKL 
Sbjct: 248 VKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF--KADIIIYTTLIRGFCYAGRWDDGAKLL 305

Query: 437 RFMLKKRI 444
           R M+K++I
Sbjct: 306 RDMIKRKI 313



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 126/238 (52%), Gaps = 3/238 (1%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  +++   ++ N   KA L ++ + + RKM    +  DT+ YN +I+ FCE G +  
Sbjct: 381 KGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEV 440

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A EL + M    + PDI++Y  ++ G C+ G  E A  +F+ +++     ++  Y+ ++ 
Sbjct: 441 AKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIH 500

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C    ++ A +L   +  +G    P+V TY  +I   C KG + EA  +  +ME  G 
Sbjct: 501 GMCNASKVDDAWDLFCSLPLKG--VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGH 558

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           +PN  T + LI+    EG+  ++ +LI+++   G  S       +VV+++   RLK++
Sbjct: 559 SPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG-FSVDASTVKMVVDMLSDGRLKKS 615



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           +DA  LF+ M R      L+ +S L   + R    +  L+L  +ME +G   + N+ T +
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKG--IAHNLYTLS 111

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I   C    +  A   + ++  LG  P+ VT STLI G C+EG               
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEG--------------- 156

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
                               R+ EA +L  +M+  G KP  +  + ++  LCL G+V + 
Sbjct: 157 --------------------RVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
             L + + + GF    +   +  +L  +C+   +  A +L R M +++I L       I+
Sbjct: 197 VLLIDRMVETGF--QPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254

Query: 456 EHLKKSGDEELITNL 470
           + L K G  +   NL
Sbjct: 255 DGLCKDGSLDNAFNL 269


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 200/410 (48%), Gaps = 23/410 (5%)

Query: 60  TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
           T V EVL R   + S+  ++FF WA  +  + H+   Y    E+    +N ++  + + +
Sbjct: 87  TTVFEVL-RLIKTPSK-ALQFFNWAP-ELGFTHNDQSYFLMLEILGRARNLNVARNFLFS 143

Query: 120 YKEEGCVVSVKMMKVIFNLC----EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
            K      +VK+    FN       KA L  E++ V   M    + P  + +N+++ +  
Sbjct: 144 IKRRSNG-TVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILL 202

Query: 176 EKGDMIAA----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           ++G    A    DE++   G+    PD  T+  +I+GFC    +++    FK M R  C 
Sbjct: 203 KRGRTNMAQSVFDEMLSTYGVT---PDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCD 259

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            +LV Y+ L+DG+CR G +  A  ++  M K+  + +P+VVTYT++++ +C K  + EAL
Sbjct: 260 PDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEAL 319

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC-YSSLVVE 350
            + + M + G  PN +T +TLIKG C    +D+  Q+ +  + GG      C  ++L+  
Sbjct: 320 VVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNA 379

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
                 L +A ++F KM+   V+PD    SV+IR LC  G       L++++ +   L  
Sbjct: 380 HCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLR 439

Query: 411 VDS-----DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
            D        +  +   LCR   + +A ++ R ++K+    Q P   KI+
Sbjct: 440 DDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGT--QDPLSFKIL 487



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 149/368 (40%), Gaps = 72/368 (19%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG-MGLIDLYPDIITYVS 204
           +EA+ V  +M    L+P+ I YN +I+  CE   +    ++ +G +G     PD  T  +
Sbjct: 316 DEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNT 375

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EKE 263
           ++   CNAG L DA  +F+ M       +   YS L+  +C+ G+ ERA +L  E+ EKE
Sbjct: 376 LMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKE 435

Query: 264 ----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
                  C+P V  Y S+ +  C  G   +A  +  ++   G   + ++   LIKG C E
Sbjct: 436 ILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQ-DPLSFKILIKGHCRE 494

Query: 320 GNLDE-----------------------------------AYQLIDKVVAGGSVSSGGCY 344
           G  +                                    AYQ ++K++    V     +
Sbjct: 495 GTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTF 554

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF----CLYE 400
            S++  L+      E+ +    ML   ++ +    +  +R L   G   + F     LY 
Sbjct: 555 HSILARLLAKGCAHESARFIMLMLEGKIRQNINLSTHTVRLLFGSGLRDKAFKIVGLLYA 614

Query: 401 -----DIEK-IGFLS--------------------SVDSDIHSVLLLGLCRKNHSVEAAK 434
                D+E+ IGFLS                    +VD D+   ++ GLC+     EA  
Sbjct: 615 NGYVVDMEELIGFLSHNRKFLLAHKLLLFCLEKHQNVDIDMCDTVIEGLCKMKRHSEAFG 674

Query: 435 LARFMLKK 442
           L   +++K
Sbjct: 675 LYYELVEK 682



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 118/303 (38%), Gaps = 48/303 (15%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG-------------L 192
           N+A+ V  KM   ++RPD+  Y+ +IR  C++G+   A++L   +              L
Sbjct: 387 NDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPL 446

Query: 193 IDLYP----------------------------DIITYVSMIKGFCNAGRLEDACGLFKV 224
           +  Y                             D +++  +IKG C  G  E    L  +
Sbjct: 447 VAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQDPLSFKILIKGHCREGTFEAGYELLVL 506

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M R     +L  Y +L+DG+ + G    A + L +M K      P   T+ S++     K
Sbjct: 507 MLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSH--VPETSTFHSILARLLAK 564

Query: 285 GMMKEALGILDRMEALGCAPNRVTIST-LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
           G   E+   +  M   G     + +ST  ++     G  D+A++++  + A G V     
Sbjct: 565 GCAHESARFIMLMLE-GKIRQNINLSTHTVRLLFGSGLRDKAFKIVGLLYANGYVVD--- 620

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
              L+  L   ++   A KL    L      D   C  +I  LC   +  E F LY ++ 
Sbjct: 621 MEELIGFLSHNRKFLLAHKLLLFCLEKHQNVDIDMCDTVIEGLCKMKRHSEAFGLYYELV 680

Query: 404 KIG 406
           + G
Sbjct: 681 EKG 683


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 171/322 (53%), Gaps = 8/322 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +V+   E GC   V     I N   ++   + A+ +LRKM E +++ D   Y+ +I   C
Sbjct: 170 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLC 229

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G + AA  L K M    +   ++TY S+++G C AG+  D   L K M       N++
Sbjct: 230 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 289

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ LLD   + G ++ A EL  EM   G   SPN++TY +++  +C +  + EA  +LD
Sbjct: 290 TFNVLLDVFVKEGKLQEANELYKEMITRG--ISPNIITYNTLMDGYCMQNRLSEANNMLD 347

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M    C+P+ VT ++LIKG+C+   +D+  ++   +   G V++   YS LV    ++ 
Sbjct: 348 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 407

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           ++K AE+LF +M++ GV PD +   +++  LC  G++ +   ++ED++K    S +D  I
Sbjct: 408 KIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK----SKMDLGI 463

Query: 416 --HSVLLLGLCRKNHSVEAAKL 435
             ++ ++ G+C+     +A  L
Sbjct: 464 VMYTTIIEGMCKGGKVEDAWNL 485



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 167/325 (51%), Gaps = 4/325 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+ ++ +M E   +PD + YN+++   C  GD   A +L++ M   ++  D+ TY ++
Sbjct: 165 SEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTI 224

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I   C  G ++ A  LFK M+  G  +++V Y++L+ G+C+ G       LL +M     
Sbjct: 225 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR-- 282

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  PNV+T+  ++ +F  +G ++EA  +   M   G +PN +T +TL+ G+C++  L EA
Sbjct: 283 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 342

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             ++D +V          ++SL+      KR+ +  K+F  +   G+  + +  S++++ 
Sbjct: 343 NNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQG 402

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
            C  G++     L++++   G L  V +  + +LL GLC      +A ++   + K ++ 
Sbjct: 403 FCQSGKIKLAEELFQEMVSHGVLPDVMT--YGILLDGLCDNGKLEKALEIFEDLQKSKMD 460

Query: 446 LQGPYVDKIVEHLKKSGDEELITNL 470
           L       I+E + K G  E   NL
Sbjct: 461 LGIVMYTTIIEGMCKGGKVEDAWNL 485



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 166/331 (50%), Gaps = 4/331 (1%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           + S+ +D++   +E      V     I +   +    + A+ + ++M    ++   + YN
Sbjct: 198 DTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 257

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           +++R  C+ G       L+K M   ++ P++IT+  ++  F   G+L++A  L+K M   
Sbjct: 258 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 317

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G + N++ Y+ L+DG C    +  A  +L  M +    CSP++VT+TS+I+ +C    + 
Sbjct: 318 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR--NKCSPDIVTFTSLIKGYCMVKRVD 375

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           + + +   +   G   N VT S L++GFC  G +  A +L  ++V+ G +     Y  L+
Sbjct: 376 DGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 435

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L    +L++A ++F  +  S +    +  + +I  +C GG+V + + L+  +   G  
Sbjct: 436 DGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK 495

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            +V +  ++V++ GLC+K    EA  L R M
Sbjct: 496 PNVMT--YTVMISGLCKKGSLSEANILLRKM 524



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 140/288 (48%), Gaps = 2/288 (0%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V +V    V+ ++  K     EA  + ++M    + P+ I YN ++  +C +  +  A+ 
Sbjct: 285 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 344

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           ++  M      PDI+T+ S+IKG+C   R++D   +F+ + + G  AN V YS L+ G C
Sbjct: 345 MLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC 404

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G ++ A EL  EM   G    P+V+TY  ++   C  G +++AL I + ++       
Sbjct: 405 QSGKIKLAEELFQEMVSHG--VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 462

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  +T+I+G C  G +++A+ L   +   G   +   Y+ ++  L +   L EA  L  
Sbjct: 463 IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLR 522

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           KM   G  P+    + +IR     G +     L E+++  GF +   S
Sbjct: 523 KMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASS 570



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 130/245 (53%), Gaps = 3/245 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C + RL+ EA  +L  M      PD + + ++I+ +C    +    ++ + +    L  +
Sbjct: 334 CMQNRLS-EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVAN 392

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            +TY  +++GFC +G+++ A  LF+ M  HG   +++ Y  LLDG+C  G +E+ALE+  
Sbjct: 393 AVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFE 452

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +++K   D    +V YT++I+  C  G +++A  +   +   G  PN +T + +I G C 
Sbjct: 453 DLQKSKMDLG--IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 510

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           +G+L EA  L+ K+   G+  +   Y++L+   +R   L  + KL  +M + G   D  +
Sbjct: 511 KGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASS 570

Query: 379 CSVMI 383
             ++I
Sbjct: 571 IKMVI 575



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 4/229 (1%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           +DA  LF+ M R     +LV +S     I R       L+   ++E  G   + N+ T  
Sbjct: 60  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNG--IAHNIYTLN 117

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I  FC       A  +L ++  LG  P+  T +TLIKG  +EG + EA  L+D++V  
Sbjct: 118 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 177

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G       Y+S+V  + R+     A  L  KM    VK D    S +I  LC  G +   
Sbjct: 178 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 237

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             L++++E  G  SSV +  ++ L+ GLC+     + A L + M+ + I
Sbjct: 238 ISLFKEMETKGIKSSVVT--YNSLVRGLCKAGKWNDGALLLKDMVSREI 284



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 117/248 (47%), Gaps = 4/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P ++ +           +        K ++ +G A N+   + +++  CR      A  +
Sbjct: 76  PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 135

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           LG++ K G +  P+  T+ ++I+    +G + EA+ ++DRM   GC P+ VT ++++ G 
Sbjct: 136 LGKVMKLGYE--PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGI 193

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G+   A  L+ K+      +    YS+++  L R   +  A  LF +M   G+K   
Sbjct: 194 CRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSV 253

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + ++R LC  G+  +G  L +D+     + +V +   +VLL    ++    EA +L 
Sbjct: 254 VTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT--FNVLLDVFVKEGKLQEANELY 311

Query: 437 RFMLKKRI 444
           + M+ + I
Sbjct: 312 KEMITRGI 319



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G APN +T S+LI GFC E  LDEA Q++D +V  G          L+  L+R KR    
Sbjct: 729 GIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKGDSD----IRYLLAGLMRKKRKGSE 784

Query: 361 EKLFSKMLASGVKPDGLACSVMIR 384
            + +  +      PD L+CS   R
Sbjct: 785 TEGWENL------PDDLSCSTASR 802



 Score = 41.6 bits (96), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 150/356 (42%), Gaps = 46/356 (12%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR-KMPEFD 159
           C+  ++++   I  D+ ++  + G V+      +I  +C+  ++  E  W L   +P   
Sbjct: 439 CDNGKLEKALEIFEDLQKSKMDLGIVM---YTTIIEGMCKGGKV--EDAWNLFCSLPCKG 493

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++P+ + Y  +I   C+KG +  A+ L++ M      P+  TY ++I+     G L  + 
Sbjct: 494 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA 553

Query: 220 GLFKVMKRHGCAANLVAYSALLD----GICRL--------GSMERA--LELLGEMEKEGG 265
            L + MK  G +A+  +   ++D     + RL        GS  R   LEL G  +    
Sbjct: 554 KLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQDLLELSGSEKIRLS 613

Query: 266 DCS-----P-NVVTYTSVIQIFCGKGM----MKEALGILDRMEALGCAPNRVTISTLIKG 315
             +     P N +T +  +     +GM    +   L  L R   L    NR  +  L+  
Sbjct: 614 SLTFVKMFPCNTITTSLNVNTIEARGMNSAELNRDLRKLRRSSVLKKFKNR-DVRVLVTN 672

Query: 316 FCVEGNLDEAY--QLIDKVVAGGSVSSGGCYSSLVVELVRTKR---LKEAEKLFSKMLAS 370
             +   L++A    ++D  +   +V     Y+     + R  R   +  AE+L  +M+  
Sbjct: 673 ELLTWGLEDAECDLMVDLELPTDAVH----YAHRAGRMRRPGRKMTVVTAEELHKEMIQR 728

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           G+ P+ +  S +I   C   ++ E   + + +   G     DSDI   LL GL RK
Sbjct: 729 GIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG-----DSDIR-YLLAGLMRK 778


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 168/337 (49%), Gaps = 6/337 (1%)

Query: 128 SVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           +V    ++ N LC++ +L  +A   +  M    ++P+ + YN VI  +C +G +  A  +
Sbjct: 235 TVYTFNIMINVLCKEGKL-KKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMV 293

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           +  M    + PD  TY S+I G C  G+LE+A G+ + MK  G     V Y+ L+DG C 
Sbjct: 294 LDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCN 353

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G + +A     EM +      P V TY  +I     +G M EA G++  M   G  P+ 
Sbjct: 354 KGDLVKAFGYRDEMVRRA--ILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDS 411

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           +T + LI G+C  GN  +A+ L D++++ G   +   Y+SL+  L +  R+K A+ LF K
Sbjct: 412 ITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEK 471

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           ++  G  PD +  + +I   C  G +   F L ++++K   +   D   ++ L+ G CR+
Sbjct: 472 IIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVP--DEVTYNTLMQGRCRE 529

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
               EA +L + M ++ I       + ++    K GD
Sbjct: 530 GKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGD 566



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 168/330 (50%), Gaps = 5/330 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  +C+  +L  EA  +L KM E  L P  + YN +I  +C KGD++ A      M   
Sbjct: 312 LISGMCKGGKL-EEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRR 370

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P + TY  +I      G++++A G+ K M   G   + + Y+ L++G CR G+ ++A
Sbjct: 371 AILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKA 430

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  EM  +G    P +VTYTS+I +   +  MK A  + +++   G +P+ +  + LI
Sbjct: 431 FNLHDEMISKG--IQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALI 488

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  GNLD A+ L+ ++     V     Y++L+    R  +++EA +L  +M   G++
Sbjct: 489 DGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIR 548

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD ++ + +I      G + + F + +++  IGF  ++ +  ++ L+ GLC+      A 
Sbjct: 549 PDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLT--YNALIQGLCKNQQGDLAE 606

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           +L + M+ K I         ++E + K  D
Sbjct: 607 ELLKEMVSKGITPDDSTYFSLIEGIGKVDD 636



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 143/297 (48%), Gaps = 5/297 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           CE  R  ++A      M E  + P    +N ++ LF +         L   M  + +   
Sbjct: 177 CELKR-GDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKST 235

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           + T+  MI   C  G+L+ A      M+  G   N+V Y+ ++ G C  G +E A  +L 
Sbjct: 236 VYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLD 295

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
            M+  G    P+  TY S+I   C  G ++EA GIL++M+ +G  P  VT +TLI G+C 
Sbjct: 296 IMKNRG--VEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCN 353

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           +G+L +A+   D++V    + +   Y+ L+  L    ++ EA+ +   M  SG+ PD + 
Sbjct: 354 KGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSIT 413

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +++I   C  G   + F L++++   G   ++ +  ++ L+  L ++N    A  L
Sbjct: 414 YNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVT--YTSLIYVLSKRNRMKAADDL 468



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 55/107 (51%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +L++M    +RPD I YN +I  + ++GD+  A  +   M  I   P ++TY ++I
Sbjct: 534 EARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALI 593

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +G C   + + A  L K M   G   +   Y +L++GI ++     A
Sbjct: 594 QGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 186/363 (51%), Gaps = 12/363 (3%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW-V 151
           S + +  C+ +R+ Q     ++++E+ K  GC   V    ++ + LC+++++A  A W V
Sbjct: 195 SVLIDGLCKANRVSQ----AVELLESMKARGCSPDVITYTILVDGLCKESKVA--AAWEV 248

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           LR+M +    P+ + YN+++   C    +  A  LM+ M      P+++TY ++I G C 
Sbjct: 249 LREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 308

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
            GR++DAC +   M   G   +L+ Y+ L++G+C+   ++ ++ LL       G   P+V
Sbjct: 309 VGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALL--RRAVSGGIKPDV 366

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           VTY+SVI   C    + EA  +L  +++ GC P+ +  STLI G C  G +DEA+ L + 
Sbjct: 367 VTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEV 426

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +   G  +    YS+L+  L +  R+ EA  L ++M+  G  P  +  + +I+ LC    
Sbjct: 427 MAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNH 486

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV 451
           + E   L E++E+     S  +  +++L+ G+CR      A  L      + +   G  +
Sbjct: 487 LDEAIELVEEMERSNCAPSAVT--YNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTAL 544

Query: 452 DKI 454
           D I
Sbjct: 545 DTI 547



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 152/293 (51%), Gaps = 10/293 (3%)

Query: 153 RKMPEFDLR--PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           R+  + D R  P+ I Y+ +I   C+   +  A EL++ M      PD+ITY  ++ G C
Sbjct: 178 RRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLC 237

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
              ++  A  + + M   GC  NLV Y++LL G+CR   +  AL L+ +M   G  C+PN
Sbjct: 238 KESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRG--CTPN 295

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           VVTY ++I   C  G +K+A  +L  M   G  P+ +  + LI G C    +DE+  L+ 
Sbjct: 296 VVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLR 355

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           + V+GG       YSS++  L R+ RL EA +L   + + G  PD +  S +I  LC  G
Sbjct: 356 RAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAG 415

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLK 441
           +V E F LYE +   G     D+D+  +S L+ GLC+     EA  L   M++
Sbjct: 416 KVDEAFDLYEVMAGDG----CDADVVTYSTLIDGLCKAGRVDEAHLLLARMVR 464



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 165/328 (50%), Gaps = 11/328 (3%)

Query: 119 AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
           A +  G V    +   + +   K +  ++A+ +L +M +    P+ + YN++I   C+  
Sbjct: 69  AMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNN 128

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM---KRHG----CA 231
           +   A EL + M  ++  P ++TY +++ G    G+LE A  LF+ M   + H     C+
Sbjct: 129 EPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCS 188

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            N++ YS L+DG+C+   + +A+ELL  M+  G  CSP+V+TYT ++   C +  +  A 
Sbjct: 189 PNVITYSVLIDGLCKANRVSQAVELLESMKARG--CSPDVITYTILVDGLCKESKVAAAW 246

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +L  M   GC PN VT ++L+ G C    + +A  L+  +   G   +   Y +L+  L
Sbjct: 247 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 306

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +  R+K+A  + + M+  G  PD +  +++I  LC   QV E   L       G    V
Sbjct: 307 CKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDV 366

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            +  +S ++ GLCR N   EA +L  ++
Sbjct: 367 VT--YSSVIYGLCRSNRLDEACRLLLYV 392



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 163/318 (51%), Gaps = 4/318 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           ++ C  +V    V+ +   KA   ++A+ +L  M      PD I Y  ++   C++  + 
Sbjct: 184 DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVA 243

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
           AA E+++ M      P+++TY S++ G C A R+ DA  L + M   GC  N+V Y  L+
Sbjct: 244 AAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLI 303

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG+C++G ++ A  +L +M  +GG  +P+++ Y  +I   C    + E++ +L R  + G
Sbjct: 304 DGLCKVGRVKDACAMLADMIDKGG--TPDLMIYNMLINGLCKADQVDESIALLRRAVSGG 361

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+ VT S++I G C    LDEA +L+  V + G       YS+L+  L +  ++ EA 
Sbjct: 362 IKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAF 421

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
            L+  M   G   D +  S +I  LC  G+V E   L   + ++G   S  +  ++ L+ 
Sbjct: 422 DLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMT--YNSLIK 479

Query: 422 GLCRKNHSVEAAKLARFM 439
           GLC  NH  EA +L   M
Sbjct: 480 GLCDLNHLDEAIELVEEM 497



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 162/306 (52%), Gaps = 11/306 (3%)

Query: 124 GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC  +V     + + LC+  R+  +A  +L  M +    PD +IYN +I   C+   +  
Sbjct: 291 GCTPNVVTYGTLIDGLCKVGRV-KDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDE 349

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           +  L++      + PD++TY S+I G C + RL++AC L   +K  GC  +++ YS L+D
Sbjct: 350 SIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLID 409

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C+ G ++ A +L   M  +G  C  +VVTY+++I   C  G + EA  +L RM  +G 
Sbjct: 410 GLCKAGKVDEAFDLYEVMAGDG--CDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGT 467

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+ +T ++LIKG C   +LDEA +L++++       S   Y+ L+  + R +R+  A  
Sbjct: 468 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVV 527

Query: 363 LFSK-----MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
           L  +     + A G   D +A S +I  LC  G+V E    ++++   G +   D   +S
Sbjct: 528 LLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIP--DHITYS 585

Query: 418 VLLLGL 423
           +LL GL
Sbjct: 586 ILLEGL 591



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 167/310 (53%), Gaps = 10/310 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KA+ + +A+   R M    +  DT+IY  ++    ++  +  A  ++  M   
Sbjct: 50  LIDGLC-KAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDH 108

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+++TY S+I G C     + A  LF+ MK   C+ ++V Y+ LLDG+ R G +ERA
Sbjct: 109 GCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERA 168

Query: 254 LELLGEM-EKEGGD----CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           + L  EM ++   D    CSPNV+TY+ +I   C    + +A+ +L+ M+A GC+P+ +T
Sbjct: 169 MALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVIT 228

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + L+ G C E  +  A++++ +++  G V +   Y+SL+  L R +R+ +A  L   M 
Sbjct: 229 YTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMT 288

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYED-IEKIGFLSSVDSDIHSVLLLGLCRKN 427
             G  P+ +    +I  LC  G+V +   +  D I+K G   + D  I+++L+ GLC+ +
Sbjct: 289 CRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG---TPDLMIYNMLINGLCKAD 345

Query: 428 HSVEAAKLAR 437
              E+  L R
Sbjct: 346 QVDESIALLR 355



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 139/286 (48%), Gaps = 11/286 (3%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD   Y  ++R FC  G++  A      M   +L P++     +I G C A R  DA  
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F+ M+  G  A+ V Y+ALL G+ +   +++AL +L EM   G  C PNVVTY S+I  
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHG--CEPNVVTYNSLIDG 123

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C       A  + + M+++ C+P+ VT +TL+ G    G L+ A  L  +++   S   
Sbjct: 124 LCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDM 183

Query: 341 GG-------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
                     YS L+  L +  R+ +A +L   M A G  PD +  ++++  LC   +V 
Sbjct: 184 DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVA 243

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
             + +  ++   G + ++ +  ++ LL GLCR     +A  L R M
Sbjct: 244 AAWEVLREMLDAGCVPNLVT--YNSLLHGLCRARRVSDALALMRDM 287



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 120/249 (48%), Gaps = 9/249 (3%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWV 151
           +SS +Y   C  +R+ +   +++ V    K  GC   V +   + +   KA   +EA  +
Sbjct: 369 YSSVIYG-LCRSNRLDEACRLLLYV----KSRGCPPDVILYSTLIDGLCKAGKVDEAFDL 423

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
              M       D + Y+ +I   C+ G +  A  L+  M  +   P  +TY S+IKG C+
Sbjct: 424 YEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCD 483

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE---GGDCS 268
              L++A  L + M+R  CA + V Y+ L+ G+CR+  ++ A+ LL + +      G  +
Sbjct: 484 LNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTA 543

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
            + + Y+S+I   C  G + EAL     M   G  P+ +T S L++G     +L E   L
Sbjct: 544 LDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHL 603

Query: 329 I-DKVVAGG 336
           + D++V  G
Sbjct: 604 VLDQMVQLG 612



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 42/251 (16%)

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEK--------------------------- 262
           C  ++  Y+ALL G CR G +++A     EM                             
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 263 ------EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
                 +G     + V YT+++     +  + +AL IL  M   GC PN VT ++LI G 
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML-------A 369
           C     D A +L + + +     S   Y++L+  L RT +L+ A  LF +ML        
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMD 184

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
               P+ +  SV+I  LC   +V +   L E ++  G   S D   +++L+ GLC+++  
Sbjct: 185 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARG--CSPDVITYTILVDGLCKESKV 242

Query: 430 VEAAKLARFML 440
             A ++ R ML
Sbjct: 243 AAAWEVLREML 253



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 2/177 (1%)

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C P+V TY ++++ FC  G + +A    D M +    PN    S LI G C      +A 
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +    +   G V+    Y++L+  L + KRL +A  +  +M   G +P+ +  + +I  L
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           C   +      L+E ++ +    S+ +  ++ LL GL R      A  L + ML +R
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVT--YNTLLDGLFRTGKLERAMALFQEMLDRR 179


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 165/306 (53%), Gaps = 2/306 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +   EA  VL +M    + PD   Y+ +I   C+   +  A+++++ M   
Sbjct: 168 LIDGLCKSQKFL-EAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGS 226

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD++ Y S+I  FC +G+L +A    + M++   + ++V Y+ ++DG+C+LG +  A
Sbjct: 227 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEA 286

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +L +M+ E GD  P+VVTY++VI   C   M+ EA  +LDRM   GC P+ VT +T+I
Sbjct: 287 QVILDQMQ-ESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTII 345

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G L+EA  L+  +   G   +   Y++L+  L + +++ EAE++  +M  +G  
Sbjct: 346 DGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCP 405

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  + M+  LC+ G++ E   L + ++      S D+  +  ++  L   +   EA 
Sbjct: 406 PNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAE 465

Query: 434 KLARFM 439
           +L   M
Sbjct: 466 QLLEQM 471



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 173/325 (53%), Gaps = 5/325 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  +E GC  ++    V+ +   K  +   A  V++KM E    P+ + +N+++  FC
Sbjct: 79  LLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFC 138

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G++  A +L+  M    + P+++TY ++I G C + +  +A  + + MK  G   +  
Sbjct: 139 KRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAF 198

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YSAL+ G+C+   +E A ++L  M   G  C+P+VV Y+S+I  FC  G + EA   L 
Sbjct: 199 TYSALIHGLCKADKIEEAEQMLRRM--AGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQ 256

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-SSGGCYSSLVVELVRT 354
            M     +P+ VT +T+I G C  G + EA  ++D++   G V      YS+++  L ++
Sbjct: 257 EMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKS 316

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
             L EA+KL  +M  +G  PD +  + +I  LC  G++ E   L + +++ G   +V + 
Sbjct: 317 DMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVT- 375

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFM 439
            ++ L+ GLC+     EA ++   M
Sbjct: 376 -YTTLISGLCKARKVDEAERVMEEM 399



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 152/285 (53%), Gaps = 7/285 (2%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L +M      PD   +  +I      GD+  A + ++ MG     P+++TY ++I 
Sbjct: 9   ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG---CDPNVVTYTALIA 65

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            F  A +LE+A  L + M+  GC  NLV Y+ L+D +C+L  +  A +++ +M  EGG  
Sbjct: 66  AFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM-IEGG-F 123

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +PNV+T+ S++  FC +G + +A  +L  M A G  PN VT S LI G C      EA +
Sbjct: 124 APNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKE 183

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           +++++ A G       YS+L+  L +  +++EAE++  +M  SG  PD +  S +I   C
Sbjct: 184 VLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFC 243

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
             G++LE     +++ K     S D   ++ ++ GLC+     EA
Sbjct: 244 KSGKLLEAQKTLQEMRK--QRKSPDVVTYNTVIDGLCKLGKIAEA 286



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 143/269 (53%), Gaps = 7/269 (2%)

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C  GD+ AA EL++ M      PD  T+  +I    NAG L+   G    ++  GC  N+
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLD---GAMDHLRSMGCDPNV 57

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V Y+AL+    R   +E A++LL EM + G  C PN+VTY  ++   C   M+  A  ++
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERG--CPPNLVTYNVLVDALCKLSMVGAAQDVV 115

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
            +M   G APN +T ++L+ GFC  GN+D+A +L+  +VA G   +   YS+L+  L ++
Sbjct: 116 KKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKS 175

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
           ++  EA+++  +M ASGV PD    S +I  LC   ++ E   +   +   G   + D  
Sbjct: 176 QKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG--CTPDVV 233

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           ++S ++   C+    +EA K  + M K+R
Sbjct: 234 VYSSIIHAFCKSGKLLEAQKTLQEMRKQR 262



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 111/199 (55%), Gaps = 7/199 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS--VKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           C++ +I +   +I+D ++   E G V+   V    VI  LC K+ +  EA  +L +M + 
Sbjct: 278 CKLGKIAE-AQVILDQMQ---ESGDVLPDVVTYSTVINGLC-KSDMLVEAQKLLDRMCKA 332

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
              PD + Y  +I   C+ G +  A+ L++GM      P+++TY ++I G C A ++++A
Sbjct: 333 GCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEA 392

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             + + M+  GC  NLV Y+ +++G+C  G ++ A +L+  M+    +CSP+  TY +++
Sbjct: 393 ERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIV 452

Query: 279 QIFCGKGMMKEALGILDRM 297
                  +++EA  +L++M
Sbjct: 453 NALMSSDLVQEAEQLLEQM 471


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 169/316 (53%), Gaps = 4/316 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CV  V    ++     K     +AM +L +M +    PD + YN V+   C++G +  A 
Sbjct: 191 CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAI 250

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           E +K +      P+ ++Y  ++KG C A R EDA  L   M + GC  N+V ++ L+  +
Sbjct: 251 EFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFL 310

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           CR G +E ALE+L ++ K G  CSPN ++Y  ++  FC +  M +A+  LD M + GC P
Sbjct: 311 CRKGLVEPALEVLEQIPKYG--CSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYP 368

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           + V+ +TL+   C  G +D A +L+ ++   G       Y++++  L +  + KEA +L 
Sbjct: 369 DIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELL 428

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           ++M++ G++PD +  S +   LC   ++ +    +  ++ +G     ++ +++ ++LGLC
Sbjct: 429 NEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI--RPNTVLYNAIILGLC 486

Query: 425 RKNHSVEAAKLARFML 440
           ++  +  A  L  +M+
Sbjct: 487 KRRETHSAIDLFAYMI 502



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 165/345 (47%), Gaps = 43/345 (12%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           + +    C+ S  KQ     + +++  +++GC   +    V+ N +C++ R+ ++A+  L
Sbjct: 199 TILLEATCKRSGYKQ----AMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV-DDAIEFL 253

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT----------- 201
           + +P +   P+T+ YN V++  C       A+ELM  MG     P+++T           
Sbjct: 254 KNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRK 313

Query: 202 ------------------------YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
                                   Y  ++  FC   +++ A     +M   GC  ++V+Y
Sbjct: 314 GLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSY 373

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + LL  +CR G ++ A+ELL +++ +G  C+P +++Y +VI      G  KEAL +L+ M
Sbjct: 374 NTLLTALCRSGEVDVAVELLHQLKDKG--CAPVLISYNTVIDGLTKAGKTKEALELLNEM 431

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
            + G  P+ +T ST+  G C E  +++A +   KV   G   +   Y+++++ L + +  
Sbjct: 432 VSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRET 491

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
             A  LF+ M+ +G  P+    +++I  L   G + E   L +++
Sbjct: 492 HSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 536



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 132/251 (52%), Gaps = 4/251 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           ++GC  +V    ++ + LC K  L   A+ VL ++P++   P+++ YN ++  FC++  M
Sbjct: 293 QKGCPPNVVTFNMLISFLCRKG-LVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKM 351

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A   +  M     YPDI++Y +++   C +G ++ A  L   +K  GCA  L++Y+ +
Sbjct: 352 DKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV 411

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG+ + G  + ALELL EM  +G    P+++TY+++    C +  +++A+    +++ +
Sbjct: 412 IDGLTKAGKTKEALELLNEMVSKG--LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM 469

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN V  + +I G C       A  L   ++  G + +   Y+ L+  L     +KEA
Sbjct: 470 GIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 529

Query: 361 EKLFSKMLASG 371
             L  ++ + G
Sbjct: 530 RDLLDELCSRG 540



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 151/315 (47%), Gaps = 22/315 (6%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           RPD      +I+     G    A  ++   G     PD++ Y +M+ G+C AG+++ A  
Sbjct: 95  RPDAGTCAALIKKLSASGRTAEARRVLAACG-----PDVMAYNAMMAGYCGAGQVDAA-- 147

Query: 221 LFKVMKRHGCAANLV---AYS--ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
                 R  CA   V   AY+   L+ G+C  G    AL +L EM +    C P+VVTYT
Sbjct: 148 ------RRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRR--RCVPDVVTYT 199

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +++  C +   K+A+ +LD M   GC P+ VT + ++ G C EG +D+A + +  + + 
Sbjct: 200 ILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSY 259

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   Y+ ++  L   +R ++AE+L  +M   G  P+ +  +++I  LC  G V   
Sbjct: 260 GCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPA 319

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
             + E I K G   S +S  ++ LL   C++    +A      M+ +  +      + ++
Sbjct: 320 LEVLEQIPKYG--CSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLL 377

Query: 456 EHLKKSGDEELITNL 470
             L +SG+ ++   L
Sbjct: 378 TALCRSGEVDVAVEL 392


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 169/316 (53%), Gaps = 4/316 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CV  V    ++     K     +AM +L +M +    PD + YN V+   C++G +  A 
Sbjct: 63  CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAI 122

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           E +K +      P+ ++Y  ++KG C A R EDA  L   M + GC  N+V ++ L+  +
Sbjct: 123 EFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFL 182

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           CR G +E ALE+L ++ K G  C+PN ++Y  ++  FC +  M +A+  LD M + GC P
Sbjct: 183 CRKGLVEPALEVLEQIPKYG--CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYP 240

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           + V+ +TL+   C  G +D A +L+ ++   G       Y++++  L +  + KEA +L 
Sbjct: 241 DIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELL 300

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           ++M++ G++PD +  S +   LC   ++ +    +  ++ +G     ++ +++ ++LGLC
Sbjct: 301 NEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI--RPNTVLYNAIILGLC 358

Query: 425 RKNHSVEAAKLARFML 440
           ++  +  A  L  +M+
Sbjct: 359 KRRETHSAIDLFAYMI 374



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 165/345 (47%), Gaps = 43/345 (12%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           + +    C+ S  KQ     + +++  +++GC   +    V+ N +C++ R+ ++A+  L
Sbjct: 71  TILLEATCKRSGYKQ----AMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV-DDAIEFL 125

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT----------- 201
           + +P +   P+T+ YN V++  C       A+ELM  MG     P+++T           
Sbjct: 126 KNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRK 185

Query: 202 ------------------------YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
                                   Y  ++  FC   +++ A     +M   GC  ++V+Y
Sbjct: 186 GLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSY 245

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + LL  +CR G ++ A+ELL +++ +G  C+P +++Y +VI      G  KEAL +L+ M
Sbjct: 246 NTLLTALCRSGEVDVAVELLHQLKDKG--CAPVLISYNTVIDGLTKAGKTKEALELLNEM 303

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
            + G  P+ +T ST+  G C E  +++A +   KV   G   +   Y+++++ L + +  
Sbjct: 304 VSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRET 363

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
             A  LF+ M+ +G  P+    +++I  L   G + E   L +++
Sbjct: 364 HSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 408



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 135/271 (49%), Gaps = 7/271 (2%)

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           + Y +M+ G+C AG+L+ A  L   M       +   Y+ L+ G+C  G    AL +L E
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMPVE---PDAYTYNTLIRGLCGRGRTANALAVLDE 57

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M +    C P+VVTYT +++  C +   K+A+ +LD M   GC P+ VT + ++ G C E
Sbjct: 58  MLRR--RCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQE 115

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +D+A + +  + + G   +   Y+ ++  L   +R ++AE+L  +M   G  P+ +  
Sbjct: 116 GRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTF 175

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +++I  LC  G V     + E I K G   + +S  ++ LL   C++    +A      M
Sbjct: 176 NMLISFLCRKGLVEPALEVLEQIPKYG--CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 233

Query: 440 LKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           + +  +      + ++  L +SG+ ++   L
Sbjct: 234 VSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 264



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
            + ++++   K++GC   +     + +   KA    EA+ +L +M    L+PD I Y+ +
Sbjct: 259 DVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTI 318

Query: 171 IRLFCEKG---DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
               C +    D I A   ++ MG+    P+ + Y ++I G C       A  LF  M  
Sbjct: 319 AAGLCREDRIEDAIRAFGKVQDMGI---RPNTVLYNAIILGLCKRRETHSAIDLFAYMIG 375

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +GC  N   Y+ L++G+   G ++ A +LL E+    G+
Sbjct: 376 NGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRAGE 414


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 155/302 (51%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   RL  E   VL +M      PD + YN ++  +C++G+   A  L   M   
Sbjct: 59  IINGLCRDGRLK-ETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRN 117

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+++TY S+I   C AG L  A   F  M   G   N   Y+ +++G  + G ++ A
Sbjct: 118 GLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEA 177

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +L EM + G    P++VTY ++I   C  G M+EA+G+L  M   G  P+ V+ ST+I
Sbjct: 178 YRVLNEMTRSG--FIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTII 235

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GF     LD A+Q+  +++    +     YSSL+  L   +RL EA  +F +ML   + 
Sbjct: 236 SGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLP 295

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD    + +I   C  G + +   L++++ + GFL   D+  ++VL+ GL ++  S EA 
Sbjct: 296 PDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLP--DAVTYNVLINGLNKQARSKEAR 353

Query: 434 KL 435
           +L
Sbjct: 354 RL 355



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 212/456 (46%), Gaps = 63/456 (13%)

Query: 34  RFYTHLQKN---PNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSY 90
           RF+  +++N   PN     + T    +D  C ++     F     MG++      L+ + 
Sbjct: 4   RFFKEMERNGCLPN-----VVTYNTMIDGYCKLKRTDEAFGFLRSMGLK-----GLEPNL 53

Query: 91  RHSSFMYNRACEMSRIKQNPSIIID---------------VVEAYKEEG-----CVVSVK 130
              + + N  C   R+K+   ++++               +V  Y +EG      V+  +
Sbjct: 54  ITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAE 113

Query: 131 MMK------------VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
           M++            +I ++C+   L N AM    +M    L P+   Y  +I  F ++G
Sbjct: 114 MVRNGLSPNVVTYTSLINSMCKAGNL-NRAMEFFDQMHVRGLCPNERTYTTIINGFAQQG 172

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
            +  A  ++  M      P I+TY ++I G C  GR+E+A GL + M   G   ++V+YS
Sbjct: 173 LLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYS 232

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            ++ G  R   ++RA ++  ++E  G    P+ VTY+S+IQ  C +  + EA  +   M 
Sbjct: 233 TIISGFARNQELDRAFQM--KVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEML 290

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
            +   P+  T +TLI  +C EG+L++A  L D+++  G +     Y+ L+  L +  R K
Sbjct: 291 TIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSK 350

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELC-----LGGQVLEGFC---LYEDIEKIGFLSS 410
           EA +L  K+      P  +  + +I   C         +++GFC   L ++ +++ F S 
Sbjct: 351 EARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQV-FESM 409

Query: 411 VDSD------IHSVLLLGLCRKNHSVEAAKLARFML 440
           ++ +      I++V++ G CR  + ++A KL + M+
Sbjct: 410 INKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMV 445



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 164/369 (44%), Gaps = 28/369 (7%)

Query: 38  HLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMY 97
           H +   N +   + T  + ++S C    L+R      QM +R      L  + R  + + 
Sbjct: 111 HAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVR-----GLCPNERTYTTII 165

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMP 156
           N   +   + +   ++ ++  +    G + S+     + N  C   R+  EA+ +L+ M 
Sbjct: 166 NGFAQQGLLDEAYRVLNEMTRS----GFIPSIVTYNALINGHCVLGRME-EAIGLLQDMV 220

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
              + PD + Y+ +I  F    ++  A ++   M    + PD +TY S+I+G C   RL 
Sbjct: 221 GKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLT 280

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           +AC +F+ M       +   Y+ L++  C+ G + +AL L  EM ++G    P+ VTY  
Sbjct: 281 EACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKG--FLPDAVTYNV 338

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI---------------KGFCVEGN 321
           +I     +   KEA  +L ++      P+ VT +TLI               KGFC++G 
Sbjct: 339 LINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGL 398

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +DEA Q+ + ++      +   Y+ ++    R   + +A KL+ +M+     P  +    
Sbjct: 399 MDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLA 458

Query: 382 MIRELCLGG 390
           +++ L   G
Sbjct: 459 LVKALFTEG 467



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
            L    EME+ G  C PNVVTY ++I  +C      EA G L  M   G  PN +T + +
Sbjct: 2   GLRFFKEMERNG--CLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMI 59

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G C +G L E  +++ ++   G V     Y++LV    +     +A  L ++M+ +G+
Sbjct: 60  INGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGL 119

Query: 373 KPDGLACSVMIRELCLGGQV 392
            P+ +  + +I  +C  G +
Sbjct: 120 SPNVVTYTSLINSMCKAGNL 139



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 2/136 (1%)

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
            L     ME  GC PN VT +T+I G+C     DEA+  +  +   G   +   ++ ++ 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L R  RLKE  ++  +M   G  PD +  + ++   C  G   +   L+ ++ + G   
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSP 121

Query: 410 SVDSDIHSVLLLGLCR 425
           +V +  ++ L+  +C+
Sbjct: 122 NVVT--YTSLINSMCK 135



 Score = 38.9 bits (89), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 19/208 (9%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI---------- 171
           ++G +       V+ N   K   + EA  +L K+   D  P  + YN +I          
Sbjct: 326 QKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKS 385

Query: 172 -----RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
                + FC KG M  AD++ + M   +  P+   Y  +I G C  G +  A  L+K M 
Sbjct: 386 AVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMV 445

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV-IQIFCGKG 285
                 + V   AL+  +   G      E++G++ +    C       + V ++I   +G
Sbjct: 446 HVDFVPHTVTVLALVKALFTEGMDGELNEVIGDILR---SCKLTDAELSKVLVEINQKEG 502

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLI 313
            M     +L  M   G  P+  T +  I
Sbjct: 503 NMDMVFNLLTEMAKDGLIPSTGTPTNAI 530


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 171/337 (50%), Gaps = 6/337 (1%)

Query: 128 SVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           SV    ++ N LC++ +L     +V   M    ++P+ + YN ++  +C  G + AAD +
Sbjct: 220 SVYTFNIMINVLCKEGKLKKAKDFV-GHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAI 278

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           +  M    + PD  TY S+I G C  GRLE+A  +F+ M + G   + V Y+ L+DG C 
Sbjct: 279 LTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCN 338

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G+++ A     EM K+G   SP + TY S+I     +    EA  ++  ++  G +P+ 
Sbjct: 339 KGNLDMASAYKDEMLKKG--ISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDA 396

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           +T + LI G+C   N  +A+ L D+++A G   +   Y+SL+  L +  R+KEA+ LF K
Sbjct: 397 ITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKK 456

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           + + GV PD +  + +I   C    V   F L +D++++      D    + ++ G CR+
Sbjct: 457 ITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKV--PPDEVTFNTIMQGHCRE 514

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
               EA +L   M ++ I       + ++    + GD
Sbjct: 515 GKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGD 551



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 159/313 (50%), Gaps = 13/313 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG--DMIAA--DELMKG 189
           +I  +C++ RL  EA  +  +M +  LRP  +IYN +I  FC KG  DM +A  DE++K 
Sbjct: 297 LISGMCKQGRL-EEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKK 355

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
                + P + TY S+I       R ++A  + K ++  G + + + Y+ L++G CR  +
Sbjct: 356 ----GISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCAN 411

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
            ++A  L  EM   G    P   TYTS++ +   K  MKEA  +  ++ + G  P+ +  
Sbjct: 412 AKKAFLLHDEMLASG--IKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMF 469

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           + LI G C   N+  A++L+  +           +++++    R  +++EA +LF +M  
Sbjct: 470 NALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKR 529

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            G+KPD ++ + +I      G + + F +  ++   GF  +V +  ++ L+ GLC+    
Sbjct: 530 RGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLT--YNALVQGLCKNQEG 587

Query: 430 VEAAKLARFMLKK 442
             A +L + M+ K
Sbjct: 588 DLAEELLKEMVSK 600



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 154/302 (50%), Gaps = 10/302 (3%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE----GCVVSVKMMKVIFNLCEK 141
           +Q   R S+ +YN   +    K N    +D+  AYK+E    G   ++     + +    
Sbjct: 318 VQKGLRPSAVIYNTLIDGFCNKGN----LDMASAYKDEMLKKGISPTMSTYNSLIHALFM 373

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
            +  +EA  +++++ E  + PD I YN +I  +C   +   A  L   M    + P   T
Sbjct: 374 EQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKT 433

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y S++       R+++A  LFK +   G   +++ ++AL+DG C   +++ A ELL +M+
Sbjct: 434 YTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMD 493

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           +      P+ VT+ +++Q  C +G ++EA  + D M+  G  P+ ++ +TLI G+   G+
Sbjct: 494 R--MKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGD 551

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           + +A+++ ++++  G   +   Y++LV  L + +    AE+L  +M++ G+ PD      
Sbjct: 552 IKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFT 611

Query: 382 MI 383
           +I
Sbjct: 612 LI 613



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 135/268 (50%), Gaps = 16/268 (5%)

Query: 164 TIIYNNVIRLFCEKGDMIAADE------LMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           +I+++ +I+  C   DM  ADE       MK  G++   P I T  S++  F    R E 
Sbjct: 151 SIVFDYLIKSCC---DMNRADEAFECFYTMKEKGVL---PTIETCNSLLSLFLKLNRTEA 204

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  L+  M R    +++  ++ +++ +C+ G +++A + +G ME  G    PN+VTY ++
Sbjct: 205 AWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSG--VKPNIVTYNTI 262

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +  +C  G ++ A  IL  M+     P+  T  +LI G C +G L+EA ++ +++V  G 
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGL 322

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
             S   Y++L+        L  A     +ML  G+ P     + +I  L +  +  E  C
Sbjct: 323 RPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAEC 382

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           + ++I++ G   S D+  +++L+ G CR
Sbjct: 383 MIKEIQEKGI--SPDAITYNILINGYCR 408



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 2/192 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G   + K    + ++  K     EA  + +K+    + PD I++N +I   C   ++  A
Sbjct: 426 GIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGA 485

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            EL+K M  + + PD +T+ ++++G C  G++E+A  LF  MKR G   + ++++ L+ G
Sbjct: 486 FELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISG 545

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
             R G ++ A  +  EM   G +  P V+TY +++Q  C       A  +L  M + G  
Sbjct: 546 YSRRGDIKDAFRVRNEMLDTGFN--PTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMT 603

Query: 304 PNRVTISTLIKG 315
           P+  T  TLI+G
Sbjct: 604 PDDTTYFTLIEG 615


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 195/425 (45%), Gaps = 13/425 (3%)

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSR 105
           +E +L ++   +  T   +VL   F +       FF WA+ ++ + H S  Y    ++  
Sbjct: 14  LESSLFSLSPSISKTTFFQVLR--FIASPPKAFEFFNWAS-RNGFAHDSRSYFMMLDILG 70

Query: 106 IKQNPSIIIDV---VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP 162
              N +I  +    +E        +  +    +      A L NEA+ +   M    + P
Sbjct: 71  RNGNLNIARNFLFSIERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSP 130

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
             I +N+++ +  ++G    A  +   M G   + PD  T+  +I+GFC    +++    
Sbjct: 131 SVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRF 190

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           FK M R  C  ++V Y+ L+DG+CR G +  A  ++  M K+  D SP+VVTYT++++ +
Sbjct: 191 FKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGY 250

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG-GSVSS 340
           C K  + EAL + + M + G  PN +T +TLIKG C     D+  +++   V G G V  
Sbjct: 251 CMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPD 310

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+          EA K+F KM    V+PD    SV+IR LC  G       L++
Sbjct: 311 TCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFD 370

Query: 401 DIEKIGFLSSVDS-----DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
            +     L   D        ++ +   LC+   + +A ++ R ++KK       Y   I+
Sbjct: 371 KLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDPPSYKTLII 430

Query: 456 EHLKK 460
            H K+
Sbjct: 431 GHCKE 435



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 158/382 (41%), Gaps = 47/382 (12%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   +++   +++  +V+  K+    V V    ++   C K  + +EA+ V  +M    L
Sbjct: 214 CRAGKVRIAHNVVKGMVKKMKDLSPDV-VTYTTLVRGYCMKQEI-DEALVVFEEMVSRGL 271

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKG-MGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +P+ I YN +I+  CE        E++ G +G     PD  TY +++   C+AG  ++A 
Sbjct: 272 KPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEAL 331

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTY 274
            +FK MK      +   YS L+  +C+ G  ERA +L  ++  E        C+P V  Y
Sbjct: 332 KMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAY 391

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGC-------------------------------- 302
             +    C  G   +A  +  ++   G                                 
Sbjct: 392 NPIFDFLCKNGKTHKAERVFRQLMKKGTQDPPSYKTLIIGHCKEGTFEAGYKLLLFMLRR 451

Query: 303 --APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
              P+  T   LI GF  +G    AY+ +++++    +     + S++ EL++    +E+
Sbjct: 452 DYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELLKNDFARES 511

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
                 M+   ++ +    +  +R L   G  ++ F + E +   G++  ++      L+
Sbjct: 512 ASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIKAFQIVELLYDNGYMVDMEE-----LI 566

Query: 421 LGLCRKNHSVEAAKLARFMLKK 442
             +C+    ++A K+  F L+K
Sbjct: 567 GFICQNGKLLDAQKMLSFCLEK 588



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 124/296 (41%), Gaps = 48/296 (16%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-------PD 198
           +EA+ + +KM E  ++PD+  Y+ +IR  C++GD   A++L   +   D+        P 
Sbjct: 328 DEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPL 387

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           +  Y  +    C  G+   A  +F+ + + G   +  +Y  L+ G C+ G+ E   +LL 
Sbjct: 388 VAAYNPIFDFLCKNGKTHKAERVFRQLMKKG-TQDPPSYKTLIIGHCKEGTFEAGYKLLL 446

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN----RVTISTLIK 314
            M +   D  P+  TY  +I  F  KG    A   L+RM      P        +S L+K
Sbjct: 447 FMLRR--DYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELLK 504

Query: 315 G-FCVEG----------------NLD--------------EAYQLIDKVVAGGSVSSGGC 343
             F  E                 NL               +A+Q+++ +   G +     
Sbjct: 505 NDFARESASFVVLMIDRKIRQNINLSTHTMRLLFGSGLRIKAFQIVELLYDNGYMVD--- 561

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
              L+  + +  +L +A+K+ S  L  G   D   C+V+I  LC   + LE F LY
Sbjct: 562 MEELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLCKMKRPLEAFGLY 617


>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
 gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
 gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
 gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 197/406 (48%), Gaps = 27/406 (6%)

Query: 40  QKNP-NNIEKTLATVKAKLDSTCVIEVLHRC----FPSQSQMGIRFFIWAALQSSYRHSS 94
            +NP +++E TL     ++ S  V +VL RC    FP+      RFF+WA     + HS 
Sbjct: 48  HRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAH-----RFFLWARRIPDFAHSL 102

Query: 95  FMYNRACEMSRIKQNPSIIID-VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
             Y+   E+    +  +++ D ++EA +     +S K+  ++F    +A L +EA     
Sbjct: 103 ESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFN 162

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM---KGMGLIDLYPDIITYVSMIKGFC 210
           +M EF ++P     + ++   C+K  +  A E     KG G++   P   TY  +++G+ 
Sbjct: 163 RMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIV---PSAKTYSILVRGW- 218

Query: 211 NAGRLEDACG---LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
              R+ DA G   +F  M    C  +L+AY+ALLD +C+ G ++   ++  EM   G   
Sbjct: 219 --ARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLG--L 274

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+  ++   I  +C  G +  A  +LDRM+     PN  T + +IK  C    +D+AY 
Sbjct: 275 KPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYL 334

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+D+++  G+      Y+S++        +  A KL S+M  +   PD    +++++ L 
Sbjct: 335 LLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLI 394

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
             G+      ++E + +  F  +V +  ++V++ GL RK   +E A
Sbjct: 395 RIGRFDRATEIWEGMSERKFYPTVAT--YTVMIHGLVRKKGKLEEA 438



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 2/124 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A  +L +M      PD   YN V++L    G    A E+ +GM     YP + TY  M
Sbjct: 365 NRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVM 424

Query: 206 IKGFC-NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           I G     G+LE+AC  F++M   G          L + +   G M+    L G+ME+  
Sbjct: 425 IHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMERSS 484

Query: 265 GDCS 268
             CS
Sbjct: 485 S-CS 487


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 172/333 (51%), Gaps = 6/333 (1%)

Query: 143 RLA-NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           RLA N    ++R++ +    P+   +N VI   C++G+++ A  L   M  +   PD++T
Sbjct: 178 RLARNRQGGLVRRLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVT 237

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y S+I G+   G LE+   L   M++ GCAA++V Y+AL++   + G ME+A    GEM+
Sbjct: 238 YNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMK 297

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           ++G     NVVT+++ +  FC +G+++EA+ +  +M   G  PN  T ++L+ G C  G 
Sbjct: 298 RQG--VVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR 355

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           LD+A  L+D++V  G V +   Y+ +V  L +  ++ EA+ + S M   GVK + L  + 
Sbjct: 356 LDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTT 415

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +I    +         L   ++  G    +D  ++  L+ GLC+     EA  L   M  
Sbjct: 416 LIHGHFMNNNSERALDLLNQMKNKGM--ELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAG 473

Query: 442 KRIWLQGPYVDKIVEHLKKSGDE-ELITNLPKI 473
             +         I++ L K+G E E +  L KI
Sbjct: 474 CGLRPNTVIYTTIMDALFKAGKESEAVALLHKI 506



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 153/334 (45%), Gaps = 40/334 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC++  L  EA  +  +M      PD + YN++I  + + GD+   ++L+  M   
Sbjct: 206 VIDFLCKEGELV-EARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKS 264

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               D++TY ++I  F   GR+E A   F  MKR G  AN+V +S  +D  C+ G ++ A
Sbjct: 265 GCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEA 324

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++L  +M   G    PN  TYTS++   C  G + +A+ +LD M   G  PN VT + ++
Sbjct: 325 MKLFAQMRVRG--MMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMV 382

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSG-------------------------------- 341
            G C EG + EA  ++  +  GG  ++                                 
Sbjct: 383 DGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGME 442

Query: 342 ---GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y +L+  L + +++ EA+ L  KM   G++P+ +  + ++  L   G+  E   L
Sbjct: 443 LDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVAL 502

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
              I   GF  +V +  +  L+ GLC+     EA
Sbjct: 503 LHKILDSGFQPNVVT--YCALIDGLCKAGSISEA 534



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 160/340 (47%), Gaps = 9/340 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +V   ++ GC   V     + N   K     +A     +M    +  + + ++  +  FC
Sbjct: 257 LVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFC 316

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G +  A +L   M +  + P+  TY S++ G C AGRL+DA  L   M   G   N+V
Sbjct: 317 KEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 376

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ ++DG+C+ G +  A  +L  ME+  G    N + YT++I         + AL +L+
Sbjct: 377 TYTVMVDGLCKEGKVAEADNVLSLMER--GGVKANELLYTTLIHGHFMNNNSERALDLLN 434

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +M+  G   +     TLI G C +  +DEA  L+ K+   G   +   Y++++  L +  
Sbjct: 435 QMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAG 494

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           +  EA  L  K+L SG +P+ +    +I  LC  G + E    +  + ++G   +V +  
Sbjct: 495 KESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQA-- 552

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
           ++ L+ G C+     +A  L   M+ K     G  +DK+V
Sbjct: 553 YTALIDGFCKIGSLNKAMHLMNEMIDK-----GMSLDKVV 587



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 134/270 (49%), Gaps = 4/270 (1%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           +  A+ +L +M    +  D  +Y  +I   C+   +  A  L+  M    L P+ + Y +
Sbjct: 426 SERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTT 485

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           ++     AG+  +A  L   +   G   N+V Y AL+DG+C+ GS+  A+    +M + G
Sbjct: 486 IMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELG 545

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
            D  PNV  YT++I  FC  G + +A+ +++ M   G + ++V  ++LI G+  + NL +
Sbjct: 546 LD--PNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQD 603

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A+ L  K++  G      CY+  +        ++EA  + S+M+ +G+ PD    + +IR
Sbjct: 604 AFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIR 663

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
           +    G + E   L  ++E +  LSS   D
Sbjct: 664 KYQKLGNMEEASSLQNEMESV--LSSCTED 691


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 167/316 (52%), Gaps = 9/316 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V +  ++   C+  R   EA+ ++  M  F   P+ +IYN VI   C+  D+  A E+  
Sbjct: 675 VTLGSLLNGFCQGNRF-QEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFY 733

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    +  D +TY ++I G  N+GR  DA  L + M +     N++ ++AL+D   + G
Sbjct: 734 CMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEG 793

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           ++  A  L  EM +      PNV TY S+I  FC  G + +A  + D M + GC P+ VT
Sbjct: 794 NLLEARNLYKEMIRRS--VVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVT 851

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI GFC    +++  +L  ++   G V     Y++L+    +  +L  A+K+F++M+
Sbjct: 852 YNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV 911

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRK 426
             GV PD +  ++++  LC  G++ +   + ED++K    S +D DI  +++++ GLCR 
Sbjct: 912 DCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQK----SEMDVDIITYNIIIQGLCRT 967

Query: 427 NHSVEAAKLARFMLKK 442
           +   EA  L R + +K
Sbjct: 968 DKLKEAWCLFRSLTRK 983



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 160/336 (47%), Gaps = 35/336 (10%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+ ++YN +I   C+ G++  A EL+  M    L  D++TY +++ G C +GR  DA  +
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARM 233

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M +     ++V ++AL+D   + G+++ A EL  EM +   D  PN VTY S+I   
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD--PNNVTYNSIINGL 291

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G + +A    D M + GC PN VT +TLI GFC    +DE  +L  ++   G  +  
Sbjct: 292 CMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADI 351

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV--------- 392
             Y++L+    +  +L+ A  +F  M++  V PD +   +++  LC+ G++         
Sbjct: 352 FTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDD 411

Query: 393 ----------------LEGFCLYEDIEKIGFL--------SSVDSDIHSVLLLGLCRKNH 428
                           + G C  + +EK   L           D+  +++++LGLC+   
Sbjct: 412 MRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGP 471

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464
             EA +L R M ++ I  Q    D  +E    S  E
Sbjct: 472 RREADELIRRMKEEGIICQMNAEDDHLEEHSSSNKE 507



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 164/340 (48%), Gaps = 8/340 (2%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           R +   ++  ++V +      V   +++    NL    R     ++  +KM  + +  D 
Sbjct: 51  RFEDAFALFFEMVHSQPLPSIVDFTRLLTATANL----RRYETVIYFSQKMELYGISHDL 106

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
             +  +I  FC    +  A  ++  M  +   P I+T+ S++ GFC   R+ DA  L  +
Sbjct: 107 YSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVIL 166

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M + G   N+V Y+ L+DG+C+ G +  ALELL EMEK+G     +VVTY +++   C  
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKG--LGADVVTYNTLLTGLCYS 224

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G   +A  +L  M      P+ VT + LI  F  +GNLDEA +L  +++      +   Y
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +S++  L    RL +A+K F  M + G  P+ +  + +I   C    V EG  L++ +  
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSC 344

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            GF  + D   ++ L+ G C+      A  +  +M+ +R+
Sbjct: 345 EGF--NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRV 382



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 162/330 (49%), Gaps = 4/330 (1%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARL 144
           ++S Y  +  +YN   +        +I ++++   +++G    V     +   LC   R 
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRW 227

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           ++ A  +LR M +  + PD + +  +I +F ++G++  A EL K M    + P+ +TY S
Sbjct: 228 SDAAR-MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNS 286

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C  GRL DA   F +M   GC  N+V Y+ L+ G C+   ++  ++L   M  EG
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
            +   ++ TY ++I  +C  G ++ AL I   M +    P+ +T   L+ G CV G ++ 
Sbjct: 347 FN--ADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIES 404

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A    D +           Y+ ++  L +  ++++A +LF ++   GVKPD    ++MI 
Sbjct: 405 ALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMIL 464

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            LC  G   E   L   +++ G +  ++++
Sbjct: 465 GLCKNGPRREADELIRRMKEEGIICQMNAE 494



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 173/356 (48%), Gaps = 14/356 (3%)

Query: 96   MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
            + N  C+ +R ++  S++ D ++ +   G V +V +   + N   K R  N A+ V   M
Sbjct: 680  LLNGFCQGNRFQEAVSLV-DSMDGF---GFVPNVVIYNTVINGLCKNRDLNNALEVFYCM 735

Query: 156  PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
             +  +R D + YN +I      G    A  L++ M    + P++I + ++I  F   G L
Sbjct: 736  EKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNL 795

Query: 216  EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
             +A  L+K M R     N+  Y++L++G C  G +  A  +   M  +G  C P+VVTY 
Sbjct: 796  LEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG--CFPDVVTYN 853

Query: 276  SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            ++I  FC    +++ + +   M   G   +  T +TLI G+C  G L+ A ++ +++V  
Sbjct: 854  TLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDC 913

Query: 336  GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
            G       Y+ L+  L    ++++A  +   +  S +  D +  +++I+ LC   ++ E 
Sbjct: 914  GVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEA 973

Query: 396  FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR------FMLKKRIW 445
            +CL+  + + G     D+  +  ++ GLCRK    EA KL R      FM  +RI+
Sbjct: 974  WCLFRSLTRKGV--KPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 1027



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 122/272 (44%), Gaps = 43/272 (15%)

Query: 208 GFCNAGRLEDACGLF-----------------------------------KVMKRHGCAA 232
           GF ++ R EDA  LF                                   + M+ +G + 
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISH 104

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L +++ L+   CR   +  AL +LG+M K G +  P++VT+ S++  FC    + +A  
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYE--PSIVTFGSLLHGFCLVNRIGDAFS 162

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           ++  M   G  PN V  +TLI G C  G L+ A +L++++   G  +    Y++L+  L 
Sbjct: 163 LVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLC 222

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
            + R  +A ++   M+   + PD +  + +I      G + E   LY+++ +    SSVD
Sbjct: 223 YSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQ----SSVD 278

Query: 413 SD--IHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +   ++ ++ GLC      +A K    M  K
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMASK 310



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 120/274 (43%), Gaps = 4/274 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + +  V+ +  +         L   M  + +  D+ ++  +I  FC   RL  A  L
Sbjct: 602 PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALAL 661

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M + G   ++V   +LL+G C+    + A+ L+  M  +G    PNVV Y +VI   
Sbjct: 662 LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSM--DGFGFVPNVVIYNTVINGL 719

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C    +  AL +   ME  G   + VT +TLI G    G   +A +L+  +V      + 
Sbjct: 720 CKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNV 779

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             +++L+   V+   L EA  L+ +M+   V P+    + +I   C+ G + +   +++ 
Sbjct: 780 IFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDL 839

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +   G    V +  ++ L+ G C+     +  KL
Sbjct: 840 MVSKGCFPDVVT--YNTLITGFCKSKRVEDGMKL 871



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 114/233 (48%), Gaps = 8/233 (3%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           + +DA  LF  M +     ++V ++ +L  I ++   +  + L  +ME  G   S ++ +
Sbjct: 584 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLG--ISHDLYS 641

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           +T +I  FC    +  AL +L +M  LG  P+ VT+ +L+ GFC      EA  L+D + 
Sbjct: 642 FTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMD 701

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G V +   Y++++  L + + L  A ++F  M   G++ D +  + +I  L   G+  
Sbjct: 702 GFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWT 761

Query: 394 EGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +   L  D+ K      +D ++   + L+    ++ + +EA  L + M+++ +
Sbjct: 762 DAARLLRDMVK----RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSV 810


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 171/322 (53%), Gaps = 8/322 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +V+   E GC   V     I N   ++   + A+ +LRKM E +++ D   Y+ +I   C
Sbjct: 180 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLC 239

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G + AA  L K M    +   ++TY S+++G C AG+  D   L K M       N++
Sbjct: 240 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 299

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ LLD   + G ++ A EL  EM   G   SPN++TY +++  +C +  + EA  +LD
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRG--ISPNIITYNTLMDGYCMQNRLSEANNMLD 357

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M    C+P+ VT ++LIKG+C+   +D+  ++   +   G V++   YS LV    ++ 
Sbjct: 358 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           ++K AE+LF +M++ GV PD +   +++  LC  G++ +   ++ED++K    S +D  I
Sbjct: 418 KIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK----SKMDLGI 473

Query: 416 --HSVLLLGLCRKNHSVEAAKL 435
             ++ ++ G+C+     +A  L
Sbjct: 474 VMYTTIIEGMCKGGKVEDAWNL 495



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 167/325 (51%), Gaps = 4/325 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+ ++ +M E   +PD + YN+++   C  GD   A +L++ M   ++  D+ TY ++
Sbjct: 175 SEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTI 234

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I   C  G ++ A  LFK M+  G  +++V Y++L+ G+C+ G       LL +M     
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR-- 292

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  PNV+T+  ++ +F  +G ++EA  +   M   G +PN +T +TL+ G+C++  L EA
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 352

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             ++D +V          ++SL+      KR+ +  K+F  +   G+  + +  S++++ 
Sbjct: 353 NNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQG 412

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
            C  G++     L++++   G L  V +  + +LL GLC      +A ++   + K ++ 
Sbjct: 413 FCQSGKIKLAEELFQEMVSHGVLPDVMT--YGILLDGLCDNGKLEKALEIFEDLQKSKMD 470

Query: 446 LQGPYVDKIVEHLKKSGDEELITNL 470
           L       I+E + K G  E   NL
Sbjct: 471 LGIVMYTTIIEGMCKGGKVEDAWNL 495



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 166/331 (50%), Gaps = 4/331 (1%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           + S+ +D++   +E      V     I +   +    + A+ + ++M    ++   + YN
Sbjct: 208 DTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 267

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           +++R  C+ G       L+K M   ++ P++IT+  ++  F   G+L++A  L+K M   
Sbjct: 268 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G + N++ Y+ L+DG C    +  A  +L  M +    CSP++VT+TS+I+ +C    + 
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR--NKCSPDIVTFTSLIKGYCMVKRVD 385

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           + + +   +   G   N VT S L++GFC  G +  A +L  ++V+ G +     Y  L+
Sbjct: 386 DGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 445

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L    +L++A ++F  +  S +    +  + +I  +C GG+V + + L+  +   G  
Sbjct: 446 DGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK 505

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            +V +  ++V++ GLC+K    EA  L R M
Sbjct: 506 PNVMT--YTVMISGLCKKGSLSEANILLRKM 534



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 140/288 (48%), Gaps = 2/288 (0%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V +V    V+ ++  K     EA  + ++M    + P+ I YN ++  +C +  +  A+ 
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           ++  M      PDI+T+ S+IKG+C   R++D   +F+ + + G  AN V YS L+ G C
Sbjct: 355 MLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC 414

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G ++ A EL  EM   G    P+V+TY  ++   C  G +++AL I + ++       
Sbjct: 415 QSGKIKLAEELFQEMVSHG--VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  +T+I+G C  G +++A+ L   +   G   +   Y+ ++  L +   L EA  L  
Sbjct: 473 IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLR 532

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           KM   G  P+    + +IR     G +     L E+++  GF +   S
Sbjct: 533 KMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASS 580



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 130/245 (53%), Gaps = 3/245 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C + RL+ EA  +L  M      PD + + ++I+ +C    +    ++ + +    L  +
Sbjct: 344 CMQNRLS-EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVAN 402

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            +TY  +++GFC +G+++ A  LF+ M  HG   +++ Y  LLDG+C  G +E+ALE+  
Sbjct: 403 AVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFE 462

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +++K   D    +V YT++I+  C  G +++A  +   +   G  PN +T + +I G C 
Sbjct: 463 DLQKSKMDLG--IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 520

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           +G+L EA  L+ K+   G+  +   Y++L+   +R   L  + KL  +M + G   D  +
Sbjct: 521 KGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASS 580

Query: 379 CSVMI 383
             ++I
Sbjct: 581 IKMVI 585



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 4/229 (1%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           +DA  LF+ M R     +LV +S     I R       L+   ++E  G   + N+ T  
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNG--IAHNIYTLN 127

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I  FC       A  +L ++  LG  P+  T +TLIKG  +EG + EA  L+D++V  
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G       Y+S+V  + R+     A  L  KM    VK D    S +I  LC  G +   
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             L++++E  G  SSV +  ++ L+ GLC+     + A L + M+ + I
Sbjct: 248 ISLFKEMETKGIKSSVVT--YNSLVRGLCKAGKWNDGALLLKDMVSREI 294



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 117/248 (47%), Gaps = 4/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P ++ +           +        K ++ +G A N+   + +++  CR      A  +
Sbjct: 86  PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           LG++ K G +  P+  T+ ++I+    +G + EA+ ++DRM   GC P+ VT ++++ G 
Sbjct: 146 LGKVMKLGYE--PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGI 203

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G+   A  L+ K+      +    YS+++  L R   +  A  LF +M   G+K   
Sbjct: 204 CRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSV 263

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + ++R LC  G+  +G  L +D+     + +V +   +VLL    ++    EA +L 
Sbjct: 264 VTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT--FNVLLDVFVKEGKLQEANELY 321

Query: 437 RFMLKKRI 444
           + M+ + I
Sbjct: 322 KEMITRGI 329



 Score = 38.9 bits (89), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR-KMPEFD 159
           C+  ++++   I  D+ ++  + G V+      +I  +C+  ++  E  W L   +P   
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTT---IIEGMCKGGKV--EDAWNLFCSLPCKG 503

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++P+ + Y  +I   C+KG +  A+ L++ M      P+  TY ++I+     G L  + 
Sbjct: 504 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA 563

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
            L + MK  G +A+  +   ++D +  L +M+R
Sbjct: 564 KLIEEMKSCGFSADASSIKMVIDML--LSAMKR 594


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 160/310 (51%), Gaps = 8/310 (2%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           K+I NLC + R  ++A  VLR         D   YN ++  +C  G + AA  L   +G 
Sbjct: 81  KLIRNLCRRGR-TSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRL---IGS 136

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           + + PD  TY  +I+  C+ GR+ DA  L   M R GC  N+V Y+ LL+ +CR    E+
Sbjct: 137 MPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQ 196

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+ +L EM  +G  C+PN+VTY  +I   C +G + +A  +L+R+ + G  P+ V+ +TL
Sbjct: 197 AMAVLDEMRAKG--CTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTL 254

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +KG C     D+  +L  +++    + +   +  L+    R   ++ A ++  +M   G 
Sbjct: 255 LKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGC 314

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
             +   C+++I  +C  G+V + F L  D+   G   + D+  ++ +L GLCR     +A
Sbjct: 315 ATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYG--CNPDTISYTTVLKGLCRAERWDDA 372

Query: 433 AKLARFMLKK 442
            +L   M++ 
Sbjct: 373 KELLNEMVRN 382



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 166/330 (50%), Gaps = 9/330 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I V+E   E GC  +  +  ++ N +C++ R+ ++A  +L  M  +   PDTI Y  V++
Sbjct: 303 IQVLEQMTEHGCATNTTLCNIVINSICKQGRV-DDAFKLLNDMGSYGCNPDTISYTTVLK 361

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C       A EL+  M   +  P+ +T+ + I   C  G +E A  L + M  HGC  
Sbjct: 362 GLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTV 421

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
            +V Y+AL++G C  G ++ ALEL   M      C PN +TYT+++   C    +  A  
Sbjct: 422 GVVTYNALVNGFCVQGHIDSALELFRSMP-----CKPNTITYTTLLTGLCNAERLDGAAE 476

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           ++  M    C PN VT + L+  FC +G L+EA +L+++++  G   +   Y++L+  + 
Sbjct: 477 LVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGIT 536

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +    ++A +L   +++ GV PD +  S +I  L    ++ E   L+  ++ IG      
Sbjct: 537 KDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPK-- 594

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           + +++ +LLGLC++     A     +M+  
Sbjct: 595 AVVYNKILLGLCKRCEIDNAIDFFAYMVSN 624



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 178/365 (48%), Gaps = 44/365 (12%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           V++  + +GC  ++    VI N +C + R+ ++A  +L ++P +  +PDT+ Y  +++  
Sbjct: 200 VLDEMRAKGCTPNIVTYNVIINGMCREGRV-DDARELLNRLPSYGFQPDTVSYTTLLKGL 258

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN- 233
           C        +EL   M   +  P+ +T+  +I+ FC  G +E A  + + M  HGCA N 
Sbjct: 259 CASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNT 318

Query: 234 ----------------------------------LVAYSALLDGICRLGSMERALELLGE 259
                                              ++Y+ +L G+CR    + A ELL E
Sbjct: 319 TLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNE 378

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M +   +C PN VT+ + I I C KG++++A+ ++++M   GC    VT + L+ GFCV+
Sbjct: 379 MVR--NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQ 436

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G++D A +L   +    +  +   Y++L+  L   +RL  A +L ++ML     P+ +  
Sbjct: 437 GHIDSALELFRSMPCKPNTIT---YTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTF 493

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +V++   C  G + E   L E + + G   ++ +  ++ LL G+ +   S +A +L   +
Sbjct: 494 NVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLIT--YNTLLDGITKDCSSEDALELLHGL 551

Query: 440 LKKRI 444
           + K +
Sbjct: 552 VSKGV 556



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 156/302 (51%), Gaps = 5/302 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ R+A +A+ +L  M     +P+ + Y  ++   C       A  ++  M      P
Sbjct: 153 LCDRGRVA-DALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTP 211

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +I+TY  +I G C  GR++DA  L   +  +G   + V+Y+ LL G+C     +   EL 
Sbjct: 212 NIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELF 271

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM ++  +C PN VT+  +I+ FC  GM++ A+ +L++M   GCA N    + +I   C
Sbjct: 272 AEMMEK--NCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSIC 329

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +G +D+A++L++ + + G       Y++++  L R +R  +A++L ++M+ +   P+ +
Sbjct: 330 KQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEV 389

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             +  I  LC  G + +   L E + + G   +V    ++ L+ G C + H   A +L R
Sbjct: 390 TFNTFICILCQKGLIEQAIMLIEQMSEHG--CTVGVVTYNALVNGFCVQGHIDSALELFR 447

Query: 438 FM 439
            M
Sbjct: 448 SM 449



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 143/278 (51%), Gaps = 7/278 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD  +   +IR  C +G    A  +++         D+  Y +++ G+C  G L+ A  L
Sbjct: 74  PDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRL 133

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M     A +   Y+ L+  +C  G +  AL LL +M + G  C PNVVTYT +++  
Sbjct: 134 IGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRG--CQPNVVTYTVLLEAM 188

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C     ++A+ +LD M A GC PN VT + +I G C EG +D+A +L++++ + G     
Sbjct: 189 CRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDT 248

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++L+  L  +KR  + E+LF++M+     P+ +   ++IR  C GG V     + E 
Sbjct: 249 VSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQ 308

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + + G   + ++ + ++++  +C++    +A KL   M
Sbjct: 309 MTEHG--CATNTTLCNIVINSICKQGRVDDAFKLLNDM 344



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 160/341 (46%), Gaps = 11/341 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+    S++ D++      GC  +V    V+     +     +AM VL +M     
Sbjct: 154 CDRGRVADALSLLDDMLR----RGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGC 209

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + YN +I   C +G +  A EL+  +      PD ++Y +++KG C + R +D   
Sbjct: 210 TPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEE 269

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M    C  N V +  L+   CR G +ERA+++L +M + G  C+ N      VI  
Sbjct: 270 LFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHG--CATNTTLCNIVINS 327

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G + +A  +L+ M + GC P+ ++ +T++KG C     D+A +L++++V      +
Sbjct: 328 ICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPN 387

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              +++ +  L +   +++A  L  +M   G     +  + ++   C+ G +     L+ 
Sbjct: 388 EVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFR 447

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            +         ++  ++ LL GLC       AA+L   ML+
Sbjct: 448 SMP-----CKPNTITYTTLLTGLCNAERLDGAAELVAEMLR 483



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 138/273 (50%), Gaps = 11/273 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+   I+Q     I ++E   E GC V V     + N  C +  + + A+ + R MP   
Sbjct: 399 CQKGLIEQ----AIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHI-DSALELFRSMP--- 450

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            +P+TI Y  ++   C    +  A EL+  M   D  P+++T+  ++  FC  G LE+A 
Sbjct: 451 CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAI 510

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L + M  HGC  NL+ Y+ LLDGI +  S E ALELL  +  +G   SP+V+T++S+I 
Sbjct: 511 ELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKG--VSPDVITFSSIIG 568

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
           I   +  ++EA+ +   ++ +G  P  V  + ++ G C    +D A      +V+ G + 
Sbjct: 569 ILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMP 628

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +   Y  L+  L     LKEA+ L S + + GV
Sbjct: 629 NESTYIILIEGLAHEGLLKEAQDLLSVLCSRGV 661



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 137/268 (51%), Gaps = 11/268 (4%)

Query: 133 KVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V FN     LC+K  L  +A+ ++ +M E       + YN ++  FC +G + +A EL 
Sbjct: 388 EVTFNTFICILCQKG-LIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELF 446

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M      P+ ITY +++ G CNA RL+ A  L   M R  C  N+V ++ L+   C+ 
Sbjct: 447 RSM---PCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQK 503

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +E A+EL+ +M + G  C+PN++TY +++         ++AL +L  + + G +P+ +
Sbjct: 504 GFLEEAIELVEQMMEHG--CTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVI 561

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S++I     E  ++EA QL   V   G       Y+ +++ L +   +  A   F+ M
Sbjct: 562 TFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYM 621

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEG 395
           +++G  P+     ++I  L   G + E 
Sbjct: 622 VSNGCMPNESTYIILIEGLAHEGLLKEA 649



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 84/177 (47%), Gaps = 8/177 (4%)

Query: 262 KEGGDC---SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +  G C   +P+V   T +I+  C +G   +A  +L   E  G   +    +TL+ G+C 
Sbjct: 64  ERSGSCDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCR 123

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G+LD A +LI  +       +   Y+ L+  L    R+ +A  L   ML  G +P+ + 
Sbjct: 124 YGHLDAARRLIGSMPVAPDAYT---YTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVT 180

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +V++  +C      +   + +++   G   ++ +  ++V++ G+CR+    +A +L
Sbjct: 181 YTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVT--YNVIINGMCREGRVDDAREL 235


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 157/281 (55%), Gaps = 4/281 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD I   ++IR FC+ G    A  +M+ +      PD+ITY  +I G C+ GR  DA  L
Sbjct: 117 PDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKL 176

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M R GC+ ++V ++ L++ +CR G + RA+++L +M K G  C+PN ++Y  ++  F
Sbjct: 177 LADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHG--CTPNSLSYNPLLHGF 234

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C +  M+ A+  L +M + GC P+ VT +TL+   C +G +D A +L++++ + G     
Sbjct: 235 CKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVL 294

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++++  L +  +  +A KL  +M A G+KPD +  S ++  L   G+V E    + D
Sbjct: 295 ITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHD 354

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +E +G     ++  ++ ++LGLC+   +  A     +M+++
Sbjct: 355 LEVLGV--KPNAITYNAIMLGLCKARKTDRAIDFLAYMVQR 393



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 8/285 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C   R      ++ D+V      GC  SV    ++ N LC K  L   A+ VL KMP+  
Sbjct: 165 CSTGRWMDAEKLLADMVR----RGCSPSVVTFNILINFLCRKG-LLGRAIDVLEKMPKHG 219

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             P+++ YN ++  FC++  M  A E +  M     YPDI+TY +++   C  G+++ A 
Sbjct: 220 CTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAV 279

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   +   GC+  L+ Y+ ++DG+ ++G  ++A +LL EM  +G    P+++TY+S++ 
Sbjct: 280 ELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKG--LKPDIITYSSLVG 337

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
               +G + EA+     +E LG  PN +T + ++ G C     D A   +  +V  G   
Sbjct: 338 GLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKP 397

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           +   Y+ L+  L      KEA +L +++   GV     A  V +R
Sbjct: 398 TEASYTILIEGLAYEGLAKEALELLNELCLRGVVKKSSAEKVAVR 442



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 4/288 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++E  ++ G V  V    V+ + +C   R   +A  +L  M      P  + +N +I   
Sbjct: 141 IMEIIEDSGAVPDVITYNVLISGMCSTGRWM-DAEKLLADMVRRGCSPSVVTFNILINFL 199

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C KG +  A ++++ M      P+ ++Y  ++ GFC   ++E A      M   GC  ++
Sbjct: 200 CRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDI 259

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V Y+ LL  +C+ G ++ A+ELL ++  +G  CSP ++TY +VI      G   +A  +L
Sbjct: 260 VTYNTLLTALCKDGKVDAAVELLNQLSSKG--CSPVLITYNTVIDGLSKVGKTDQAAKLL 317

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           D M A G  P+ +T S+L+ G   EG +DEA +    +   G   +   Y+++++ L + 
Sbjct: 318 DEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKA 377

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           ++   A    + M+  G KP   + +++I  L   G   E   L  ++
Sbjct: 378 RKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNEL 425



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 2/142 (1%)

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G ++E    L+ M   G  P+ +  ++LI+GFC  G   +A ++++ +   G+V     Y
Sbjct: 98  GELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITY 157

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + L+  +  T R  +AEKL + M+  G  P  +  +++I  LC  G +     + E + K
Sbjct: 158 NVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPK 217

Query: 405 IGFLSSVDSDIHSVLLLGLCRK 426
            G   + +S  ++ LL G C++
Sbjct: 218 HG--CTPNSLSYNPLLHGFCKE 237


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 168/333 (50%), Gaps = 4/333 (1%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
            +P  I        E G    V+   ++ N   K     +A  +  ++ +  LRP T+ +
Sbjct: 202 NSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSF 261

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N +I   C+  ++     L K M    +YPD+ TY  +I G C  GRL+ A  LF  M++
Sbjct: 262 NTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQ 321

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   N + ++AL+DG CR   ++ A+    +M   G    P++V Y +++   C  G +
Sbjct: 322 RGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMG--VKPDLVMYNTLLNGLCKVGDV 379

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            +A  ++D M  +G  P+++T +TLI G+C EG+L+ A ++   +   G V     +++L
Sbjct: 380 NKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTAL 439

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +    R  R+++AE+   +M+ +G+KPD    +++I   C  G V  GF L ++++  G 
Sbjct: 440 ISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGH 499

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
              V +  ++VL+ GLC++     A  L   ML
Sbjct: 500 KPGVIT--YNVLMNGLCKQGQMKNANMLLEAML 530



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 2/208 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           ++R  + AM    +M    ++PD ++YN ++   C+ GD+  A +L+  M ++ + PD I
Sbjct: 340 RSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKI 399

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY ++I G+C  G LE A  + K M   G   + VA++AL+ G CR G +  A   L EM
Sbjct: 400 TYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREM 459

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            + G    P+  TYT VI  +C KG +K    +L  M+  G  P  +T + L+ G C +G
Sbjct: 460 VEAG--MKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQG 517

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            +  A  L++ ++  G       Y+ L+
Sbjct: 518 QMKNANMLLEAMLNLGVTPDDITYNILL 545



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 2/147 (1%)

Query: 114 IDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++ +   EEG V+ +V    +I   C   R+  +A   LR+M E  ++PD   Y  VI 
Sbjct: 418 MEIRKGMNEEGVVLDNVAFTALISGFCRDGRV-RDAERTLREMVEAGMKPDDATYTMVID 476

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            +C+KG++    +L+K M +    P +ITY  ++ G C  G++++A  L + M   G   
Sbjct: 477 GYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTP 536

Query: 233 NLVAYSALLDGICRLGSMERALELLGE 259
           + + Y+ LL+G C+ G  E  L+L  E
Sbjct: 537 DDITYNILLEGHCKNGKAEDLLKLRNE 563


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 167/316 (52%), Gaps = 9/316 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V +  ++   C+  R   EA+ ++  M  F   P+ +IYN VI   C+  D+  A E+  
Sbjct: 150 VTLGSLLNGFCQGNRF-QEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFY 208

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    +  D +TY ++I G  N+GR  DA  L + M +     N++ ++AL+D   + G
Sbjct: 209 CMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEG 268

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           ++  A  L  EM +      PNV TY S+I  FC  G + +A  + D M + GC P+ VT
Sbjct: 269 NLLEARNLYKEMIRRS--VVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVT 326

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI GFC    +++  +L  ++   G V     Y++L+    +  +L  A+K+F++M+
Sbjct: 327 YNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV 386

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRK 426
             GV PD +  ++++  LC  G++ +   + ED++K    S +D DI  +++++ GLCR 
Sbjct: 387 DCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQK----SEMDVDIITYNIIIQGLCRT 442

Query: 427 NHSVEAAKLARFMLKK 442
           +   EA  L R + +K
Sbjct: 443 DKLKEAWCLFRSLTRK 458



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 173/356 (48%), Gaps = 14/356 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+ +R ++  S++ D ++ +   G V +V +   + N   K R  N A+ V   M
Sbjct: 155 LLNGFCQGNRFQEAVSLV-DSMDGF---GFVPNVVIYNTVINGLCKNRDLNNALEVFYCM 210

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            +  +R D + YN +I      G    A  L++ M    + P++I + ++I  F   G L
Sbjct: 211 EKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNL 270

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
            +A  L+K M R     N+  Y++L++G C  G +  A  +   M  +G  C P+VVTY 
Sbjct: 271 LEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG--CFPDVVTYN 328

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           ++I  FC    +++ + +   M   G   +  T +TLI G+C  G L+ A ++ +++V  
Sbjct: 329 TLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDC 388

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G       Y+ L+  L    ++++A  +   +  S +  D +  +++I+ LC   ++ E 
Sbjct: 389 GVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEA 448

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR------FMLKKRIW 445
           +CL+  + + G     D+  +  ++ GLCRK    EA KL R      FM  +RI+
Sbjct: 449 WCLFRSLTRKGV--KPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 502



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 120/274 (43%), Gaps = 4/274 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + +  V+ +  +         L   M  + +  D+ ++  +I  FC   RL  A  L
Sbjct: 77  PSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALAL 136

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M + G   ++V   +LL+G C+    + A+ L+  M  +G    PNVV Y +VI   
Sbjct: 137 LGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSM--DGFGFVPNVVIYNTVINGL 194

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C    +  AL +   ME  G   + VT +TLI G    G   +A +L+  +V      + 
Sbjct: 195 CKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNV 254

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             +++L+   V+   L EA  L+ +M+   V P+    + +I   C+ G + +   +++ 
Sbjct: 255 IFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDL 314

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +   G    V +  ++ L+ G C+     +  KL
Sbjct: 315 MVSKGCFPDVVT--YNTLITGFCKSKRVEDGMKL 346



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 114/233 (48%), Gaps = 8/233 (3%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           + +DA  LF  M +     ++V ++ +L  I ++   +  + L  +ME  G   S ++ +
Sbjct: 59  KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLG--ISHDLYS 116

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           +T +I  FC    +  AL +L +M  LG  P+ VT+ +L+ GFC      EA  L+D + 
Sbjct: 117 FTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMD 176

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G V +   Y++++  L + + L  A ++F  M   G++ D +  + +I  L   G+  
Sbjct: 177 GFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWT 236

Query: 394 EGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +   L  D+ K      +D ++   + L+    ++ + +EA  L + M+++ +
Sbjct: 237 DAARLLRDMVK----RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSV 285


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 215/467 (46%), Gaps = 33/467 (7%)

Query: 32  AERFYT----HLQKNPNNI---EKTLATVKAKLDSTCVIEVLHRCFPS-------QS--- 74
           AE+F++    H   NP      + T       LD + +I  +    PS       QS   
Sbjct: 9   AEKFHSLMKEHYLSNPRKTPPPDPTYTISSLSLDFSQIISTVRSISPSIVRHVIAQSSAV 68

Query: 75  QMGI------RFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS 128
           + GI       FF WA+ Q  +R S   YN   + S       +    ++  K     V+
Sbjct: 69  RHGIPVPQVLAFFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVT 128

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V+   ++     +A LA EA+    +M +++ +PD I ++ +I + C +     A E   
Sbjct: 129 VETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFD 188

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +      PD+I Y ++++G+C AG + +A  +F  MK  G   N+  YS ++D +CR G
Sbjct: 189 SLK-DKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCG 247

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            + RA ++  EM   G  C PN +TY S+++I    G  ++ L + ++M+ LGC P+ VT
Sbjct: 248 QITRAHDIFAEMLDAG--CQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVT 305

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + LI+  C + NL++A ++I  +   G   +   +++L   + +   +  A +++ KM 
Sbjct: 306 YNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMK 365

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
               + + +  + +++             L  ++++     +V++  + VL+   C   H
Sbjct: 366 ELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNT--YKVLITMYCGMGH 423

Query: 429 SVEAAKLARFMLKKRIWLQG-PYVDKIVEHLKKSGD----EELITNL 470
              A K  R M+ ++      P  D +++ L+K+G     EEL+  +
Sbjct: 424 WNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKAGQLKKHEELVEKM 470



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 7/257 (2%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR 143
           A ++ +    S + +  C   +I +   I  ++++A    GC  +      +  +  KA 
Sbjct: 227 AGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDA----GCQPNSITYNSLMRIHVKAG 282

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
              + + V  +M      PDT+ YN +I   C+  ++  A +++  M      P+  T+ 
Sbjct: 283 RTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFN 342

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++       G +  A  ++K MK   C AN V Y+ L+       S +  L+L  EM++ 
Sbjct: 343 TLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDE- 401

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEGNL 322
                PNV TY  +I ++CG G    A      M    C  P+      +++     G L
Sbjct: 402 -NKIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKAGQL 460

Query: 323 DEAYQLIDKVVAGGSVS 339
            +  +L++K+V  G V+
Sbjct: 461 KKHEELVEKMVDRGFVT 477


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 166/320 (51%), Gaps = 4/320 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++   E GC  +      + N+  K+     AM +LRKM E +++ D + Y+ +I   C
Sbjct: 313 LIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 372

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A  L   M +  +  +IITY  +I GFCNAGR +D   L + M +     N+V
Sbjct: 373 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVV 432

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            +S L+D   + G +  A EL  EM   G   +P+ +TYTS+I  FC +  + +A  ++D
Sbjct: 433 TFSVLIDSFVKEGKLREAEELHKEMIHRG--IAPDTITYTSLIDGFCKENHLDKANQMVD 490

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M + GC PN  T + LI G+C    +D+  +L  K+   G V+    Y++L+       
Sbjct: 491 LMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 550

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           +L  A++LF +M++  V P+ +   +++  LC  G+  +   ++E IEK      +D  I
Sbjct: 551 KLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM--ELDIGI 608

Query: 416 HSVLLLGLCRKNHSVEAAKL 435
           +++++ G+C  +   +A  L
Sbjct: 609 YNIIIHGMCNASKVDDAWDL 628



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 177/343 (51%), Gaps = 10/343 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVE-AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVL 152
           S + N  C   R+ +   ++  +VE  +K +   ++     ++  LC   + A EAM ++
Sbjct: 260 STLINGLCLEGRVSEALELVDRMVEMGHKPDLITINT----LVNGLCLSGKEA-EAMLLI 314

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
            KM E+  +P+ + Y  V+ + C+ G    A EL++ M   ++  D + Y  +I G C  
Sbjct: 315 DKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKH 374

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G L++A  LF  M+  G   N++ Y+ L+ G C  G  +   +LL +M K     +PNVV
Sbjct: 375 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR--KINPNVV 432

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           T++ +I  F  +G ++EA  +   M   G AP+ +T ++LI GFC E +LD+A Q++D +
Sbjct: 433 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 492

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           V+ G   +   ++ L+    +  R+ +  +LF KM   GV  D +  + +I+  C  G++
Sbjct: 493 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 552

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
                L++++       ++ +  + +LL GLC    S +A ++
Sbjct: 553 NVAKELFQEMVSRKVPPNIVT--YKILLDGLCDNGESEKALEI 593



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  + ++M    + PDTI Y ++I  FC++  +  A++++  M      P+I T+  +I
Sbjct: 449 EAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILI 508

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C A R++D   LF+ M   G  A+ V Y+ L+ G C LG +  A EL  EM      
Sbjct: 509 NGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR--K 566

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PN+VTY  ++   C  G  ++AL I +++E      +    + +I G C    +D+A+
Sbjct: 567 VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 626

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L   +   G       Y+ ++  L +   L EAE LF KM   G  PDG   +++IR  
Sbjct: 627 DLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAH 686

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDS 413
              G   +   L E++++ GF  SVD+
Sbjct: 687 LGDGDATKSVKLIEELKRCGF--SVDA 711



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 145/302 (48%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R  + A  +LR M +  + P+ + ++ +I  F ++G +  A+EL K M   
Sbjct: 402 LIGGFCNAGRWDDGAK-LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHR 460

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD ITY S+I GFC    L+ A  +  +M   GC  N+  ++ L++G C+   ++  
Sbjct: 461 GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 520

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           LEL  +M   G     + VTY ++IQ FC  G +  A  +   M +    PN VT   L+
Sbjct: 521 LELFRKMSLRG--VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILL 578

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G  ++A ++ +K+         G Y+ ++  +    ++ +A  LF  +   GVK
Sbjct: 579 DGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 638

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P     ++MI  LC  G + E   L+  +E+ G   + D   +++L+        + ++ 
Sbjct: 639 PGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG--HAPDGWTYNILIRAHLGDGDATKSV 696

Query: 434 KL 435
           KL
Sbjct: 697 KL 698



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 156/322 (48%), Gaps = 23/322 (7%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           + ++ +M   F  C K  LA  AM    K+ +    P+TI ++ +I   C +G +  A E
Sbjct: 221 LYTLSIMINCFCRCRKLCLAFSAM---GKIIKLGYEPNTITFSTLINGLCLEGRVSEALE 277

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L+  M  +   PD+IT  +++ G C +G+  +A  L   M  +GC  N V Y  +L+ +C
Sbjct: 278 LVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMC 337

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G    A+ELL +ME+   +   + V Y+ +I   C  G +  A  + + ME  G   N
Sbjct: 338 KSGQTALAMELLRKMEER--NIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTN 395

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            +T + LI GFC  G  D+  +L+  ++      +   +S L+   V+  +L+EAE+L  
Sbjct: 396 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 455

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV------DSDIHS-- 417
           +M+  G+ PD +  + +I          +GFC    ++K   +  +      D +I +  
Sbjct: 456 EMIHRGIAPDTITYTSLI----------DGFCKENHLDKANQMVDLMVSKGCDPNIRTFN 505

Query: 418 VLLLGLCRKNHSVEAAKLARFM 439
           +L+ G C+ N   +  +L R M
Sbjct: 506 ILINGYCKANRIDDGLELFRKM 527



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 184/397 (46%), Gaps = 37/397 (9%)

Query: 71  PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM--SRIKQNP--SIIIDVVEAYKEEGC- 125
           P+Q+Q+       + + S    S F +NR  ++    +K  P    + D  +   +EG  
Sbjct: 45  PTQAQLK------SIIASENLSSPFDFNRFLDLMAKHLKTEPFDRQLRDAFKVLDKEGTG 98

Query: 126 -VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-TIIYNNVI-RLFCEKGDMIA 182
            V    +  ++ ++ EK        W+     E D+  D  I Y + I R+     ++  
Sbjct: 99  FVAVADLRHILTSIGEKLEPNEFDEWI----KEVDVGSDGKIRYEDFIARMVANDRNLSY 154

Query: 183 ADELMKGM------GLIDLY---------PDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
            + L  G+        IDL+         P +I +  +        + +    L K M+ 
Sbjct: 155 RERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMEL 214

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G A NL   S +++  CR   +  A   +G++ K G +  PN +T++++I   C +G +
Sbjct: 215 KGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYE--PNTITFSTLINGLCLEGRV 272

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            EAL ++DRM  +G  P+ +TI+TL+ G C+ G   EA  LIDK+V  G   +   Y  +
Sbjct: 273 SEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPV 332

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  + ++ +   A +L  KM    +K D +  S++I  LC  G +   F L+ ++E  G 
Sbjct: 333 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGI 392

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            +++ +  +++L+ G C      + AKL R M+K++I
Sbjct: 393 TTNIIT--YNILIGGFCNAGRWDDGAKLLRDMIKRKI 427



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 114/217 (52%), Gaps = 2/217 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +V+    +GC  +++   ++ N   KA   ++ + + RKM    +  DT+ YN +I+ FC
Sbjct: 488 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 547

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           E G +  A EL + M    + P+I+TY  ++ G C+ G  E A  +F+ +++     ++ 
Sbjct: 548 ELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIG 607

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ ++ G+C    ++ A +L   +  +G    P V TY  +I   C KG + EA  +  
Sbjct: 608 IYNIIIHGMCNASKVDDAWDLFCSLPLKG--VKPGVKTYNIMIGGLCKKGPLSEAELLFR 665

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           +ME  G AP+  T + LI+    +G+  ++ +LI+++
Sbjct: 666 KMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL 702



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 146/339 (43%), Gaps = 51/339 (15%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLF-----CEKGDMIAADELMKGMGLIDLYPDI 199
           A++A+ + R M      P  I ++   RLF      ++ D++ A  L K M L  +  ++
Sbjct: 167 ADDAIDLFRDMIHSRPLPTVIDFS---RLFSAIAKTKQYDLVLA--LCKQMELKGIAHNL 221

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKR---HGCAANLVAYSALLDGICRLGSMERALEL 256
            T   MI  FC   +L   C  F  M +    G   N + +S L++G+C  G +  ALEL
Sbjct: 222 YTLSIMINCFCRCRKL---CLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALEL 278

Query: 257 LGEMEKEGGD---------------------------------CSPNVVTYTSVIQIFCG 283
           +  M + G                                   C PN VTY  V+ + C 
Sbjct: 279 VDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCK 338

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G    A+ +L +ME      + V  S +I G C  G+LD A+ L +++   G  ++   
Sbjct: 339 SGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIIT 398

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+ L+       R  +  KL   M+   + P+ +  SV+I      G++ E   L++++ 
Sbjct: 399 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMI 458

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             G   + D+  ++ L+ G C++NH  +A ++   M+ K
Sbjct: 459 HRGI--APDTITYTSLIDGFCKENHLDKANQMVDLMVSK 495



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           CE+ ++     +  ++V + K    +V+ K++  +  LC+    + +A+ +  K+ +  +
Sbjct: 547 CELGKLNVAKELFQEMV-SRKVPPNIVTYKIL--LDGLCDNGE-SEKALEIFEKIEKSKM 602

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
             D  IYN +I   C    +  A +L   + L  + P + TY  MI G C  G L +A  
Sbjct: 603 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAEL 662

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           LF+ M+  G A +   Y+ L+      G   ++++L+ E+++ G
Sbjct: 663 LFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 706


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 213/435 (48%), Gaps = 21/435 (4%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE 102
           + ++ +LA +   L  T V++ L     P+++   + FF W   +  + H+   Y    E
Sbjct: 80  HELQSSLAELAPSLSKTTVLQTLQLIRTPAKA---LHFFRWVEAKG-FTHNEQSYFLMIE 135

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----ARLANEAMWVLRKMPEF 158
           +    +N +   + V +  E+    +VK+    FN   +    A L  E++ V + M E 
Sbjct: 136 ILGRSRNLNAARNFVFSI-EKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEI 194

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY---PDIITYVSMIKGFCNAGRL 215
            + P  + +N+++ +  ++G    A +L   M  +D Y   PD  T+  +I+GFC    +
Sbjct: 195 GVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEM--LDTYGVTPDTYTFNILIRGFCMNSMV 252

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           ++    FK M R  C  ++V Y+ L+DG+CR G ++ A  ++  M K+  + SPNVVTYT
Sbjct: 253 DEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYT 312

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           ++I+ +C K  M EAL +L  M + G  PN++T +TLI+G C    LD+  ++++ +V  
Sbjct: 313 TLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGD 372

Query: 336 GSVSSGGC-YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
           G      C  ++L+       +L+EA  +F KM    V+PD    SV++R LC  G    
Sbjct: 373 GGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRR 432

Query: 395 GFCLYEDI-EKIGFLSSVDSD----IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449
               ++++ EK   L  V        ++ +   LC    + +A ++ R ++K+       
Sbjct: 433 AEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPS 492

Query: 450 YVDKIVEHLKKSGDE 464
           Y   I+ H ++   E
Sbjct: 493 YKTLILGHCREGTPE 507



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 160/399 (40%), Gaps = 59/399 (14%)

Query: 102 EMSRIKQNPSIII------------------DVVEAYKEEGCVVS---VKMMKVIFNLCE 140
           EMSR K +P ++                   +VV+   ++   +S   V    +I   C 
Sbjct: 261 EMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCM 320

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDI 199
           K  +A EA+ +L +M    L+P+ I YN +I+  CE   +    E+++GM G     PD 
Sbjct: 321 KQDMA-EALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDT 379

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            T  ++IK  C  G+LE+A  +F+ M       +   YS L+  +C+ G   RA E   E
Sbjct: 380 CTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDE 439

Query: 260 M-EKE----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           + EKE       C P V  Y  + +  C  G  K+A  +  ++   G   +  +  TLI 
Sbjct: 440 LAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLIL 498

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C EG  +  + L+  ++    V     Y  ++  L++      A K   KML S   P
Sbjct: 499 GHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLP 558

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG------------ 422
                  ++  L   G   E   L + + +     ++D   H+V LL             
Sbjct: 559 TTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQDKAFMTI 618

Query: 423 ------------------LCRKNHSVEAAKLARFMLKKR 443
                             LC+    +EA K+  F L+KR
Sbjct: 619 GLLYENGYLVKMEELVSFLCQSRKLLEAQKMLLFSLEKR 657



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 127/299 (42%), Gaps = 42/299 (14%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-------PDI 199
           EA  V  KM E  ++PD+  Y+ ++R  C++GD   A+E    +   ++        P +
Sbjct: 397 EAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLV 456

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
             Y  M +  C+ G+ + A  +F+ + + G   +  +Y  L+ G CR G+ E   +LL  
Sbjct: 457 AAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVL 515

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKG-----------MMKEAL--------GILDRMEAL 300
           M +   D  P+  TY  +I     KG           M+K +          IL  +   
Sbjct: 516 MLRR--DFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEK 573

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-----SVSSGGCYSS--------L 347
           GCA    ++  L+    +  N+D +   +  +   G      ++ G  Y +        L
Sbjct: 574 GCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVKMEEL 633

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           V  L ++++L EA+K+    L      D   CS +I  LC   +V E F LY ++ + G
Sbjct: 634 VSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKG 692



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 15/214 (7%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           D  PD   Y  +I    +KGD + A + ++ M      P    + S++      G   ++
Sbjct: 520 DFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEKGCAHES 579

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L K+M       N+   +  +  + + G  ++A   +G + + G      +V    ++
Sbjct: 580 ASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENG-----YLVKMEELV 634

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTI-----STLIKGFCVEGNLDEAYQLIDKVV 333
              C    + EA  +L     L     R ++     ST+I G C    + EA+ L  ++V
Sbjct: 635 SFLCQSRKLLEAQKML-----LFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELV 689

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
             G      C   L + L    RL EA+ +  KM
Sbjct: 690 EKGMQHRLTCQEDLRISLEAEGRLNEAKFVSKKM 723


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 213/435 (48%), Gaps = 21/435 (4%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE 102
           + ++ +LA +   L  T V++ L     P+++   + FF W   +  + H+   Y    E
Sbjct: 80  HELQSSLAELAPSLSKTTVLQTLQLIRTPAKA---LHFFRWVEAKG-FTHNEQSYFLMIE 135

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----ARLANEAMWVLRKMPEF 158
           +    +N +   + V +  E+    +VK+    FN   +    A L  E++ V + M E 
Sbjct: 136 ILGRSRNLNAARNFVFSI-EKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEI 194

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY---PDIITYVSMIKGFCNAGRL 215
            + P  + +N+++ +  ++G    A +L   M  +D Y   PD  T+  +I+GFC    +
Sbjct: 195 GVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEM--LDTYGVTPDTYTFNILIRGFCMNSMV 252

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           ++    FK M R  C  ++V Y+ L+DG+CR G ++ A  ++  M K+  + SPNVVTYT
Sbjct: 253 DEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYT 312

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           ++I+ +C K  M EAL +L  M + G  PN++T +TLI+G C    LD+  ++++ +V  
Sbjct: 313 TLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGD 372

Query: 336 GSVSSGGC-YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
           G      C  ++L+       +L+EA  +F KM    V+PD    SV++R LC  G    
Sbjct: 373 GGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRR 432

Query: 395 GFCLYEDI-EKIGFLSSVDSD----IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449
               ++++ EK   L  V        ++ +   LC    + +A ++ R ++K+       
Sbjct: 433 AEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPS 492

Query: 450 YVDKIVEHLKKSGDE 464
           Y   I+ H ++   E
Sbjct: 493 YKTLILGHCREGTPE 507



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 160/371 (43%), Gaps = 31/371 (8%)

Query: 102 EMSRIKQNPSIII------------------DVVEAYKEEGCVVS---VKMMKVIFNLCE 140
           EMSR K +P ++                   +VV+   ++   +S   V    +I   C 
Sbjct: 261 EMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCM 320

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDI 199
           K  +A EA+ +L +M    L+P+ I YN +I+  CE   +    E+++GM G     PD 
Sbjct: 321 KQDMA-EALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDT 379

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            T  ++IK  C  G+LE+A  +F+ M       +   YS L+  +C+ G   RA E   E
Sbjct: 380 CTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDE 439

Query: 260 M-EKE----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           + EKE       C P V  Y  + +  C  G  K+A  +  ++   G   +  +  TLI 
Sbjct: 440 LAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLIL 498

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C EG  +  + L+  ++    V     Y  ++  L++      A K   KML S   P
Sbjct: 499 GHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLP 558

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV--LLLGLCRKNHSVEA 432
                  ++  L   G   E   L + + +     ++D   H++  L+  LC+    +EA
Sbjct: 559 TTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEA 618

Query: 433 AKLARFMLKKR 443
            K+  F L+KR
Sbjct: 619 QKMLLFSLEKR 629



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 102/301 (33%), Gaps = 82/301 (27%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG-------------LI 193
           EA  V  KM E  ++PD+  Y+ ++R  C++GD   A+E    +              L+
Sbjct: 397 EAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLV 456

Query: 194 DLY----------------------------PDIITYVSMIKGFCNAGRLEDACGLFKVM 225
             Y                             D  +Y ++I G C  G  E    L  +M
Sbjct: 457 AAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAGFDLLVLM 516

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
            R     +   Y  ++DG+ + G    A + L +M K      P    + S++     KG
Sbjct: 517 LRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSH--LPTTAIFHSILAALVEKG 574

Query: 286 MMKEALGILDRM------------------------------EA----LGCAPNRVTI-- 309
              E+  ++  M                              EA    L     R ++  
Sbjct: 575 CAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDI 634

Query: 310 ---STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
              ST+I G C    + EA+ L  ++V  G      C   L + L    RL EA+ +  K
Sbjct: 635 DMCSTVISGLCKAHKVSEAFALYYELVEKGMQHRLTCQEDLRISLEAEGRLNEAKFVSKK 694

Query: 367 M 367
           M
Sbjct: 695 M 695


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 163/326 (50%), Gaps = 12/326 (3%)

Query: 113 IIDVVEAYK---EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           I+D    +K   E GC  +V     + +   K    +EA+ +L KM E   R +T+ Y+ 
Sbjct: 524 ILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYST 583

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           V+    + G M  A  +++ M      PD +TY ++I GF    RL +A GL + M   G
Sbjct: 584 VVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAG 643

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              ++V Y+ L  G+CR G  + A+E+L  M   G  C+PN +TY+S++   C  G + E
Sbjct: 644 FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG--CAPNAITYSSIVDGLCKAGRVTE 701

Query: 290 ALGILDRM---EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           ALG  ++M   E +  AP+ +  S LI G C  G +DEAY+ +++++  G +     +S 
Sbjct: 702 ALGYFEKMARDEVV--APHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSI 759

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+  L    R+    +LF  M   G K D  A + MI   CL G+    + L E+++  G
Sbjct: 760 LINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHG 819

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEA 432
              + ++  H +++  LC  +   EA
Sbjct: 820 I--AKNTVTHGIVIKALCGNDRIDEA 843



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 152/285 (53%), Gaps = 5/285 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K+ +  +A+ +L  M E  L PD I +N+V+   C++  ++ A  + K        P+++
Sbjct: 485 KSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVV 544

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY ++I G     ++++A  L   M   GC AN V YS ++DG+ ++G ME A+ +L +M
Sbjct: 545 TYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQM 604

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G  C P+ VTY ++I  F  +  ++EA+G+L  M   G  P+ VT +TL  G C  G
Sbjct: 605 RDAG--CLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSG 662

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG-VKPDGLAC 379
             DEA +++D + A G   +   YSS+V  L +  R+ EA   F KM     V P  +A 
Sbjct: 663 RFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAY 722

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           S +I  LC  G++ E +   E + + G +  V +   S+L+ GLC
Sbjct: 723 SALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVT--FSILINGLC 765



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 150/292 (51%), Gaps = 9/292 (3%)

Query: 156 PEFDL------RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
           PE D       RP  + YN ++    + G +  A  L++ M    L PD+IT+ S++ G 
Sbjct: 459 PEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGL 518

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C   R+ DA  +FK     GC  N+V YS L+DG+ ++  M+ AL+LL +M + G  C  
Sbjct: 519 CKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG--CRA 576

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           N VTY++V+      G M++A+ +L +M   GC P+ VT +TLI GF     L EA  L+
Sbjct: 577 NTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLL 636

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            +++  G   S   Y++L   L R+ R  EA ++   M A G  P+ +  S ++  LC  
Sbjct: 637 REMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKA 696

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           G+V E    +E + +   ++      +S L+ GLC+     EA +    M++
Sbjct: 697 GRVTEALGYFEKMARDEVVAP-HVIAYSALIDGLCKAGRIDEAYEFLERMIR 747



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 159/351 (45%), Gaps = 9/351 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E GC  +      + +   K     +A+ VLR+M +    PD + YN +I  F ++  + 
Sbjct: 571 ELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLR 630

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  L++ M     +P ++TY ++  G C +GR ++A  +   M   GCA N + YS+++
Sbjct: 631 EAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIV 690

Query: 242 DGICRLGSMERALELLGEMEKEGGD--CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           DG+C+ G   R  E LG  EK   D   +P+V+ Y+++I   C  G + EA   L+RM  
Sbjct: 691 DGLCKAG---RVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIR 747

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  P+ VT S LI G C  G +D   +L   +   G  +    Y++++           
Sbjct: 748 AGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSA 807

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A  L  +M   G+  + +   ++I+ LC   ++ E    +  I +       D   ++ L
Sbjct: 808 AYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPE----DCRDEISYNTL 863

Query: 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           +  L     S +A +L R M+             +++ L K+G  E+   L
Sbjct: 864 ITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKL 914



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 109/194 (56%), Gaps = 2/194 (1%)

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++TY  +I G C AGR+ DA   F+   + G    +V YS ++DG+CR   +++  +LL 
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM   G  C+PN VTY +++    G+G  KEA  +L+RM A GC P  +T   +IKG C 
Sbjct: 61  EMAGRG--CAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCK 118

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           EG ++ A++++D++V  G V     ++ L+  L    R+ EA   F ++L  G  PD + 
Sbjct: 119 EGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVT 178

Query: 379 CSVMIRELCLGGQV 392
            + M+  L   G++
Sbjct: 179 YNTMVDGLYKAGRL 192



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 170/346 (49%), Gaps = 20/346 (5%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           VV+   + G V  V++  V+ + LCE  R+ +EA +  +++      PD + YN ++   
Sbjct: 128 VVDEMVDRGFVPDVEIHTVLLHALCELGRV-DEAWFFFQQVLLIGFTPDAVTYNTMVDGL 186

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            + G + AA  +++ +      P + T+   + G   AG L  A   F  M + G + N 
Sbjct: 187 YKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNT 246

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V Y AL+DG+C+ G ++ AL LL +   + G     +  ++S++   C    ++EA+ +L
Sbjct: 247 VTYDALIDGLCKAGKLDIALGLLRDKNSQAG-----MFAFSSLLHGLCQAHRLEEAIQLL 301

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
              +A+ C PN V  ++L+ G C    +DEA++L D +   G  +    Y+ L+  L + 
Sbjct: 302 ---KAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKL 358

Query: 355 KRLKEAEKLFSKMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           +R+ EA +    M  + G  P+ +  S +I+ LC  G+V + + +YE +  +  +S  + 
Sbjct: 359 RRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISP-NR 417

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW-------LQGPYVD 452
             ++ LL GLC+   S    +    ML +R W       +  P VD
Sbjct: 418 FTYAFLLEGLCKAGDSRRLEQCFEQML-EREWRSSSSWPIHSPEVD 462



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 180/404 (44%), Gaps = 58/404 (14%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           + ++  K   CV +V     + N   +AR  +EA  +   M E     D I YN +++  
Sbjct: 296 EAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGL 355

Query: 175 CEKGDMIAADELMKGMGLID-LYPDIITYVSMIKGFCNAGRLEDACGLFKVM-KRHGCAA 232
           C+   +  A   ++ M   +   P+++T+ ++I+G CNAGR+  A  +++ M    G + 
Sbjct: 356 CKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISP 415

Query: 233 NLVAYSALLDGICRLGS---MERALELLGEMEKEGGD----------------CSPNVVT 273
           N   Y+ LL+G+C+ G    +E+  E + E E                     C P +VT
Sbjct: 416 NRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVT 475

Query: 274 YTSVIQIFCGKGMMKEALGILDRM---------------------------------EAL 300
           Y +++      GM+++ALG+L+ M                                  AL
Sbjct: 476 YNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRAL 535

Query: 301 --GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             GC PN VT STLI G      +DEA QL+ K+V  G  ++   YS++V  L++  R++
Sbjct: 536 ERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRME 595

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
           +A  +  +M  +G  PD +  + +I       ++ E   L  ++ + GF  SV +  ++ 
Sbjct: 596 DAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVT--YTT 653

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           L  GLCR     EA ++  +M  +           IV+ L K+G
Sbjct: 654 LCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAG 697



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 156/389 (40%), Gaps = 69/389 (17%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V+   ++ GC+        + +   K +   EA+ +LR+M E    P  + Y  +    C
Sbjct: 600 VLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLC 659

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA-NL 234
             G    A E++  M      P+ ITY S++ G C AGR+ +A G F+ M R    A ++
Sbjct: 660 RSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHV 719

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGG----------------------------- 265
           +AYSAL+DG+C+ G ++ A E L  M + G                              
Sbjct: 720 IAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCG 779

Query: 266 ----DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
                C  ++  Y ++I  +C KG    A  +L+ M+  G A N VT   +IK  C    
Sbjct: 780 MAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDR 839

Query: 322 LDEA---------------------------------YQLIDKVVAGGSVSSGGCYSSLV 348
           +DEA                                  +L+  +VA G       Y +++
Sbjct: 840 IDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVM 899

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L +    + A KL  +M + G  PD    ++MI  L    Q+      +E++ +    
Sbjct: 900 DGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNL- 958

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
              D+ ++S L+   C+ +   +A KL R
Sbjct: 959 -KPDAIVYSSLIDAFCKADKVDDAWKLLR 986



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 140/306 (45%), Gaps = 8/306 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R+ + A    RK  +F  RP  + Y+ VI   C   ++    +L++ M   
Sbjct: 7   LINGLCKAGRVCD-AFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGR 65

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+ +TY +++      GR ++A  L + M  +GC   L+ +  ++ G+C+ G +E A
Sbjct: 66  GCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAA 125

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             ++ EM   G    P+V  +T ++   C  G + EA     ++  +G  P+ VT +T++
Sbjct: 126 FRVVDEMVDRG--FVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMV 183

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G    G L+ A  ++  +    S  +   ++  V  L +   L  A + F  M  +GV 
Sbjct: 184 DGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVS 243

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +    +I  LC  G++     L  D      + +  S +H     GLC+ +   EA 
Sbjct: 244 PNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLH-----GLCQAHRLEEAI 298

Query: 434 KLARFM 439
           +L + M
Sbjct: 299 QLLKAM 304



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 18/330 (5%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E     GC  +      + N       A EA  +L +M      P+ I +  +I+  C
Sbjct: 58  LLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLC 117

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G++ AA  ++  M      PD+  +  ++   C  GR+++A   F+ +   G   + V
Sbjct: 118 KEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAV 177

Query: 236 AYSALLDGICRLGSMERA---LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
            Y+ ++DG+ + G +E A   L+LL E        SP V T+T  +      G +  A  
Sbjct: 178 TYNTMVDGLYKAGRLEAAGMVLQLLAESFS-----SPTVFTFTIAVDGLSKAGNLTGAYE 232

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI-DKVVAGGSVSSGGCYSSLVVEL 351
             D M   G +PN VT   LI G C  G LD A  L+ DK    G  +    +SSL+  L
Sbjct: 233 FFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFA----FSSLLHGL 288

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +  RL+EA +L   M      P+ +  + ++  LC   +V E F L++ +++ G   S 
Sbjct: 289 CQAHRLEEAIQLLKAM---PCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESG--CSA 343

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           D   +++LL GLC+     EA +    M +
Sbjct: 344 DVITYNILLKGLCKLRRIPEAYRHVELMRR 373



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 4/261 (1%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + YN +I   C+ G +  A    +        P ++TY ++I G C    ++  C L + 
Sbjct: 2   VTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE 61

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   GCA N V Y+ L++ +   G  + A  LL  M   G  C P ++T+  +I+  C +
Sbjct: 62  MAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANG--CPPELITFGLIIKGLCKE 119

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G ++ A  ++D M   G  P+    + L+   C  G +DEA+    +V+  G       Y
Sbjct: 120 GEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTY 179

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +++V  L +  RL+ A  +   +  S   P     ++ +  L   G +   +  ++ + +
Sbjct: 180 NTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQ 239

Query: 405 IGFLSSVDSDIHSVLLLGLCR 425
            G   S ++  +  L+ GLC+
Sbjct: 240 TGV--SPNTVTYDALIDGLCK 258



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 122/246 (49%), Gaps = 10/246 (4%)

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V Y+ L++G+C+ G +  A     +  + G    P VVTY++VI   C    + +   +
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFG--FRPTVVTYSTVIDGLCRDNEVDKGCKL 58

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L+ M   GCAPN VT +TL+     +G   EA+ L++++ A G       +  ++  L +
Sbjct: 59  LEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCK 118

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
              ++ A ++  +M+  G  PD    +V++  LC  G+V E +  ++ +  IGF  + D+
Sbjct: 119 EGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGF--TPDA 176

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI-VEHLKKSGD----EELIT 468
             ++ ++ GL  K   +EAA +   +L +       +   I V+ L K+G+     E   
Sbjct: 177 VTYNTMVDGL-YKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFD 235

Query: 469 NLPKIG 474
           ++P+ G
Sbjct: 236 SMPQTG 241



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 5/191 (2%)

Query: 142  ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
            +R + +A+ +LR M      PD   Y  V+    + G    A +L++ M      PD+ T
Sbjct: 870  SRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRT 929

Query: 202  YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
            Y  MI G   A +L  AC  F+ M R     + + YS+L+D  C+   ++ A +LL    
Sbjct: 930  YTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLL---- 985

Query: 262  KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
                   P +  Y++++   C      +AL ++  M++  C P     ++L   +  EG 
Sbjct: 986  -RSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGR 1044

Query: 322  LDEAYQLIDKV 332
            +DEA +L++ +
Sbjct: 1045 VDEAVKLVNDL 1055



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 128/300 (42%), Gaps = 10/300 (3%)

Query: 69   CFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV- 127
            C   +   G+  F   A +   +   + YN       +K   S    ++E  K  G    
Sbjct: 765  CDAGRIDTGLELFCGMA-ERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKN 823

Query: 128  SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            +V    VI  LC   R+ +EA+     +PE D R D I YN +I           A EL+
Sbjct: 824  TVTHGIVIKALCGNDRI-DEAVSYFHSIPE-DCR-DEISYNTLITSLVASRRSEQALELL 880

Query: 188  KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
            + M      PD   Y++++ G   AG  E A  L + M+  G + +L  Y+ ++ G+ + 
Sbjct: 881  RAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKA 940

Query: 248  GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
              +  A +   EM ++  +  P+ + Y+S+I  FC    + +A  +L    + G  P   
Sbjct: 941  KQLPLACDYFEEMLRK--NLKPDAIVYSSLIDAFCKADKVDDAWKLL---RSSGIEPTIT 995

Query: 308  TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
              ST++   C     D+A ++I ++ +         ++SL    V   R+ EA KL + +
Sbjct: 996  MYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDL 1055



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 5/158 (3%)

Query: 141  KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
            KA     A  +L++M      PD   Y  +I    +   +  A +  + M   +L PD I
Sbjct: 904  KAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAI 963

Query: 201  TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
             Y S+I  FC A +++DA   +K+++  G    +  YS ++D +C+    ++ALE++ EM
Sbjct: 964  VYSSLIDAFCKADKVDDA---WKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREM 1020

Query: 261  EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            + +  +C P +  +TS+   +  +G + EA+ +++ ++
Sbjct: 1021 KSK--NCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 171/322 (53%), Gaps = 8/322 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +V+   E GC   V     I N   ++   + A+ +LRKM E +++ D   Y+ +I   C
Sbjct: 180 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLC 239

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G + AA  L K M    +   ++TY S+++G C AG+  D   L K M       N++
Sbjct: 240 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 299

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ LLD   + G ++ A EL  EM   G   SPN++TY +++  +C +  + EA  +LD
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRG--ISPNIITYNTLMDGYCMQNRLSEANNMLD 357

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M    C+P+ VT ++LIKG+C+   +D+  ++   +   G V++   YS LV    ++ 
Sbjct: 358 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           ++K AE+LF +M++ GV PD +   +++  LC  G++ +   ++ED++K    S +D  I
Sbjct: 418 KIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK----SKMDLGI 473

Query: 416 --HSVLLLGLCRKNHSVEAAKL 435
             ++ ++ G+C+     +A  L
Sbjct: 474 VMYTTIIEGMCKGGKVEDAWNL 495



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 167/326 (51%), Gaps = 4/326 (1%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            +EA+ ++ +M E   +PD + YN+++   C  GD   A +L++ M   ++  D+ TY +
Sbjct: 174 VSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYST 233

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I   C  G ++ A  LFK M+  G  +++V Y++L+ G+C+ G       LL +M    
Sbjct: 234 IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR- 292

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
            +  PNV+T+  ++ +F  +G ++EA  +   M   G +PN +T +TL+ G+C++  L E
Sbjct: 293 -EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE 351

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  ++D +V          ++SL+      KR+ +  K+F  +   G+  + +  S++++
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             C  G++     L++++   G L  V +  + +LL GLC      +A ++   + K ++
Sbjct: 412 GFCQSGKIKLAEELFQEMVSHGVLPDVMT--YGILLDGLCDNGKLEKALEIFEDLQKSKM 469

Query: 445 WLQGPYVDKIVEHLKKSGDEELITNL 470
            L       I+E + K G  E   NL
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNL 495



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 166/331 (50%), Gaps = 4/331 (1%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           + S+ +D++   +E      V     I +   +    + A+ + ++M    ++   + YN
Sbjct: 208 DTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 267

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           +++R  C+ G       L+K M   ++ P++IT+  ++  F   G+L++A  L+K M   
Sbjct: 268 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G + N++ Y+ L+DG C    +  A  +L  M +    CSP++VT+TS+I+ +C    + 
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR--NKCSPDIVTFTSLIKGYCMVKRVD 385

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           + + +   +   G   N VT S L++GFC  G +  A +L  ++V+ G +     Y  L+
Sbjct: 386 DGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 445

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L    +L++A ++F  +  S +    +  + +I  +C GG+V + + L+  +   G  
Sbjct: 446 DGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK 505

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            +V +  ++V++ GLC+K    EA  L R M
Sbjct: 506 PNVMT--YTVMISGLCKKGSLSEANILLRKM 534



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 140/288 (48%), Gaps = 2/288 (0%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V +V    V+ ++  K     EA  + ++M    + P+ I YN ++  +C +  +  A+ 
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           ++  M      PDI+T+ S+IKG+C   R++D   +F+ + + G  AN V YS L+ G C
Sbjct: 355 MLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC 414

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G ++ A EL  EM   G    P+V+TY  ++   C  G +++AL I + ++       
Sbjct: 415 QSGKIKLAEELFQEMVSHG--VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  +T+I+G C  G +++A+ L   +   G   +   Y+ ++  L +   L EA  L  
Sbjct: 473 IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLR 532

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           KM   G  P+    + +IR     G +     L E+++  GF +   S
Sbjct: 533 KMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASS 580



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 138/258 (53%), Gaps = 4/258 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C + RL+ EA  +L  M      PD + + ++I+ +C    +    ++ + +    L  +
Sbjct: 344 CMQNRLS-EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVAN 402

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            +TY  +++GFC +G+++ A  LF+ M  HG   +++ Y  LLDG+C  G +E+ALE+  
Sbjct: 403 AVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFE 462

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +++K   D    +V YT++I+  C  G +++A  +   +   G  PN +T + +I G C 
Sbjct: 463 DLQKSKMDLG--IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 520

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           +G+L EA  L+ K+   G+  +   Y++L+   +R   L  + KL  +M + G   D  +
Sbjct: 521 KGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASS 580

Query: 379 CSVMIRELCLGGQVLEGF 396
             ++I ++ L G++ + F
Sbjct: 581 IKMVI-DMLLSGELDKSF 597



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 127/225 (56%), Gaps = 6/225 (2%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            ++ M V R + +  L  + + Y+ +++ FC+ G +  A+EL + M    + PD++TY  
Sbjct: 384 VDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGI 443

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           ++ G C+ G+LE A  +F+ +++      +V Y+ +++G+C+ G +E A  L   +  +G
Sbjct: 444 LLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG 503

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PNV+TYT +I   C KG + EA  +L +ME  G APN  T +TLI+    +G+L  
Sbjct: 504 --VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTA 561

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           + +LI+++ + G  S+      +V++++ +    E +K F  ML+
Sbjct: 562 SAKLIEEMKSCG-FSADASSIKMVIDMLLS---GELDKSFLDMLS 602



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 4/229 (1%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           +DA  LF+ M R     +LV +S     I R       L+   ++E  G   + N+ T  
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNG--IAHNIYTLN 127

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I  FC       A  +L ++  LG  P+  T +TLIKG  +EG + EA  L+D++V  
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G       Y+S+V  + R+     A  L  KM    VK D    S +I  LC  G +   
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             L++++E  G  SSV +  ++ L+ GLC+     + A L + M+ + I
Sbjct: 248 ISLFKEMETKGIKSSVVT--YNSLVRGLCKAGKWNDGALLLKDMVSREI 294



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 117/248 (47%), Gaps = 4/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P ++ +           +        K ++ +G A N+   + +++  CR      A  +
Sbjct: 86  PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           LG++ K G +  P+  T+ ++I+    +G + EA+ ++DRM   GC P+ VT ++++ G 
Sbjct: 146 LGKVMKLGYE--PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGI 203

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G+   A  L+ K+      +    YS+++  L R   +  A  LF +M   G+K   
Sbjct: 204 CRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSV 263

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + ++R LC  G+  +G  L +D+     + +V +   +VLL    ++    EA +L 
Sbjct: 264 VTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT--FNVLLDVFVKEGKLQEANELY 321

Query: 437 RFMLKKRI 444
           + M+ + I
Sbjct: 322 KEMITRGI 329


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 162/297 (54%), Gaps = 4/297 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +AM +L +M     +PD + YN +I   C++G +  A + +  M      P++IT+  ++
Sbjct: 100 QAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIIL 159

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +  C+ GR  DA  L   M R GC+ ++V ++ L++ +CR G + RA+++L +M   G  
Sbjct: 160 RSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG-- 217

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C+PN ++Y  ++  FC +  M  A+  LD M + GC P+ VT +TL+   C +G +D A 
Sbjct: 218 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 277

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           ++++++ + G       Y++++  L +  + + A KL  +M   G+KPD +  S ++  L
Sbjct: 278 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 337

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
              G+V E    + D+E +G     ++  ++ ++LGLC+   +  A     +M+ KR
Sbjct: 338 SREGKVDEAIKFFHDLEGLGI--RPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKR 392



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 154/300 (51%), Gaps = 8/300 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           SF     C+ S + Q     + +++  + +G    V    V+ N +C++ RL +EA+  L
Sbjct: 86  SFYVQTTCKESGVGQ----AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRL-DEAIKFL 140

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
             MP +  +P+ I +N ++R  C  G  + A++L+  M      P ++T+  +I   C  
Sbjct: 141 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 200

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G L  A  + + M  HGC  N ++Y+ LL G C+   M+RA+E L  M   G  C P++V
Sbjct: 201 GLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG--CYPDIV 258

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TY +++   C  G +  A+ IL+++ + GC+P  +T +T+I G    G  + A +L+D++
Sbjct: 259 TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM 318

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
              G       YSSLV  L R  ++ EA K F  +   G++P+ +  + ++  LC   Q 
Sbjct: 319 RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQT 378



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 131/250 (52%), Gaps = 2/250 (0%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  SV    ++ N   +  L   A+ +L KMP     P+++ YN ++  FC++  M  
Sbjct: 181 KGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDR 240

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E +  M     YPDI+TY +++   C  G+++ A  +   +   GC+  L+ Y+ ++D
Sbjct: 241 AIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVID 300

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+ ++G  ERA++LL EM ++G    P+++TY+S++     +G + EA+     +E LG 
Sbjct: 301 GLSKVGKTERAIKLLDEMRRKG--LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGI 358

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN +T ++++ G C     D A   +  +++     +   Y+ L+  +      KEA  
Sbjct: 359 RPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALD 418

Query: 363 LFSKMLASGV 372
           L +++ + G+
Sbjct: 419 LLNELCSRGL 428



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 2/169 (1%)

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           ++  +Q  C +  + +A+ +LD M   G  P+ VT + LI G C EG LDEA + ++ + 
Sbjct: 85  FSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 144

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           + G   +   ++ ++  +  T R  +AEKL S ML  G  P  +  +++I  LC  G + 
Sbjct: 145 SYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLG 204

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               + E +   G   + +S  ++ LL G C++     A +    M+ +
Sbjct: 205 RAIDILEKMPMHG--CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 251


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 169/330 (51%), Gaps = 9/330 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I V+E     GC  +  +  ++ N +C++ R+ ++A   L  M  +   PDTI Y  V++
Sbjct: 336 IQVLEQMSGHGCAANTTLCNIVINTICKQGRV-DDAFQFLNNMGSYGCSPDTISYTTVLK 394

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C       A EL+K M   +  P+ +T+ + I   C  G +E A  L + M  HGC  
Sbjct: 395 GLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEV 454

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N+V Y+AL++G C  G ++ ALEL   M      C PN +TYT+++   C    +  A  
Sbjct: 455 NIVTYNALVNGFCVQGRVDSALELFYSMP-----CKPNTITYTTLLTGLCNAERLDAAAE 509

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L  M    CAPN VT + L+  FC +G +DEA +L+++++  G   +   Y++L+  + 
Sbjct: 510 LLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGIT 569

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +    +EA +L   ++++GV PD +  S +I  L    +V E   ++  ++ +G      
Sbjct: 570 KDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPK-- 627

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           + I++ +LL LC++ ++  A     +M+  
Sbjct: 628 AVIYNKILLALCKRCNTDGAIDFFAYMVSN 657



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 159/310 (51%), Gaps = 8/310 (2%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           K+I NLC + R  ++A  VLR         D   YN ++  +C  G + AA  L+  M +
Sbjct: 114 KLIRNLCRRGR-TSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPV 172

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               PD  TY  +I+G C+ GR+ +A  L   M   GC  ++V Y+ LL+ +C+     +
Sbjct: 173 A---PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQ 229

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+E+L EM  +G  C+PN+VTY  +I   C +G + +A   L+R+ + G  P+ V+ +T+
Sbjct: 230 AMEVLDEMRAKG--CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTV 287

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +KG C     ++  +L  +++    + +   +  LV    R   ++ A ++  +M   G 
Sbjct: 288 LKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGC 347

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
             +   C+++I  +C  G+V + F    ++   G   S D+  ++ +L GLCR     +A
Sbjct: 348 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYG--CSPDTISYTTVLKGLCRAERWEDA 405

Query: 433 AKLARFMLKK 442
            +L + M++K
Sbjct: 406 KELLKEMVRK 415



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 163/342 (47%), Gaps = 11/342 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+ +  S++ D++      GC  SV    V+     K+    +AM VL +M     
Sbjct: 187 CDRGRVGEALSLLDDMLH----RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGC 242

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + YN +I   C +G +  A E +  +      PD ++Y +++KG C A R ED   
Sbjct: 243 TPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEE 302

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M    C  N V +  L+   CR G +ERA+++L +M   G  C+ N      VI  
Sbjct: 303 LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG--CAANTTLCNIVINT 360

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G + +A   L+ M + GC+P+ ++ +T++KG C     ++A +L+ ++V      +
Sbjct: 361 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 420

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              +++ +  L +   +++A  L  +M   G + + +  + ++   C+ G+V     L+ 
Sbjct: 421 EVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFY 480

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +         ++  ++ LL GLC       AA+L   ML+K
Sbjct: 481 SMP-----CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK 517



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 152/302 (50%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ R+  EA+ +L  M     +P  + Y  ++   C+      A E++  M   
Sbjct: 182 IIRGLCDRGRVG-EALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAK 240

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+I+TY  +I G C  GR++DA      +  +G   + V+Y+ +L G+C     E  
Sbjct: 241 GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 300

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL  EM ++  +C PN VT+  +++ FC  GM++ A+ +L++M   GCA N    + +I
Sbjct: 301 EELFAEMMEK--NCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVI 358

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C +G +D+A+Q ++ + + G       Y++++  L R +R ++A++L  +M+     
Sbjct: 359 NTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP 418

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  +  I  LC  G + +   L E + + G    V+   ++ L+ G C +     A 
Sbjct: 419 PNEVTFNTFICILCQKGLIEQATMLIEQMSEHG--CEVNIVTYNALVNGFCVQGRVDSAL 476

Query: 434 KL 435
           +L
Sbjct: 477 EL 478



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 131/258 (50%), Gaps = 7/258 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++E   E GC V++     + N  C + R+ + A+ +   MP    +P+TI Y  ++   
Sbjct: 443 LIEQMSEHGCEVNIVTYNALVNGFCVQGRV-DSALELFYSMP---CKPNTITYTTLLTGL 498

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C    + AA EL+  M   D  P+++T+  ++  FC  G +++A  L + M  HGC  NL
Sbjct: 499 CNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNL 558

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + Y+ LLDGI +  + E ALELL  +   G   SP++VTY+S+I +   +  ++EA+ + 
Sbjct: 559 ITYNTLLDGITKDCNSEEALELLHGLVSNG--VSPDIVTYSSIIGVLSREDRVEEAIKMF 616

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             ++ LG  P  V  + ++   C   N D A      +V+ G + +   Y +L+  L   
Sbjct: 617 HIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANE 676

Query: 355 KRLKEAEKLFSKMLASGV 372
             LKE   L  ++ + GV
Sbjct: 677 DFLKETRDLLRELCSRGV 694



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 133/259 (51%), Gaps = 11/259 (4%)

Query: 133 KVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V FN     LC+K  L  +A  ++ +M E     + + YN ++  FC +G + +A EL 
Sbjct: 421 EVTFNTFICILCQKG-LIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELF 479

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M      P+ ITY +++ G CNA RL+ A  L   M +  CA N+V ++ L+   C+ 
Sbjct: 480 YSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQK 536

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G M+ A+EL+ +M + G  C+PN++TY +++         +EAL +L  + + G +P+ V
Sbjct: 537 GLMDEAIELVEQMMEHG--CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIV 594

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S++I     E  ++EA ++   V   G       Y+ +++ L +      A   F+ M
Sbjct: 595 TYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYM 654

Query: 368 LASGVKPDGLACSVMIREL 386
           +++G  P+ L    +I  L
Sbjct: 655 VSNGCMPNELTYITLIEGL 673



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 13/187 (6%)

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
           RA  L+      G   +P+V   T +I+  C +G   +A  +L   E  G A +    +T
Sbjct: 92  RAARLVDRATSRGE--APDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 149

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           L+ G+C  G LD A +LI  +       +   Y+ ++  L    R+ EA  L   ML  G
Sbjct: 150 LVAGYCRYGQLDAARRLIASMPVAPDAYT---YTPIIRGLCDRGRVGEALSLLDDMLHRG 206

Query: 372 VKPDGLACSVMIRELCLG---GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
            +P  +  +V++  +C     GQ +E   + +++   G   ++ +  ++V++ G+CR+  
Sbjct: 207 CQPSVVTYTVLLEAVCKSTGFGQAME---VLDEMRAKGCTPNIVT--YNVIINGMCREGR 261

Query: 429 SVEAAKL 435
             +A + 
Sbjct: 262 VDDAREF 268


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 175/331 (52%), Gaps = 7/331 (2%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLAN--EAMWVLRKMPEFDLRPDTIIYNNVI 171
           DVV+  K  G   +V     + +  C+  R+    +A  +L++M E  + P+++ +N +I
Sbjct: 251 DVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLI 310

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
             FC+  ++ AA ++ + M    L P ++TY S++ G CN G+L +A  L   M      
Sbjct: 311 DGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLK 370

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            N++ Y+AL++G C+   +E A EL   + K+G   +PNV+T+ +++  +C  G M+EA 
Sbjct: 371 PNVITYNALINGYCKKKLLEEARELFDNIGKQG--LTPNVITFNTLLHGYCKFGKMEEAF 428

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +   M   G  PN  T + LI GFC EG ++E   L++++   G  +    Y+ L+   
Sbjct: 429 LLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAW 488

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
              K  K+A +L  +ML  G+KP  L  ++++   C+ G +     L + +EK G  ++V
Sbjct: 489 CEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANV 548

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +  ++VL+ G CRK    +A  L   ML+K
Sbjct: 549 VT--YNVLIQGYCRKGKLEDANGLLNEMLEK 577



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 148/280 (52%), Gaps = 4/280 (1%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTII 166
           +N S  + V E  + +G   +V     + N LC + +L NEA  +L +M   +L+P+ I 
Sbjct: 317 ENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKL-NEAKVLLDEMLSSNLKPNVIT 375

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +I  +C+K  +  A EL   +G   L P++IT+ +++ G+C  G++E+A  L KVM 
Sbjct: 376 YNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVML 435

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G   N   Y+ L+ G CR G ME    LL EM+  G     + VTY  +I  +C K  
Sbjct: 436 EKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRG--VKADTVTYNILISAWCEKKE 493

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
            K+A  ++D M   G  P+ +T + L+ G+C+EGNL  A  L  ++   G  ++   Y+ 
Sbjct: 494 PKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNV 553

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           L+    R  +L++A  L ++ML  G+ P+     ++  E+
Sbjct: 554 LIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEM 593



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 132/246 (53%), Gaps = 7/246 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC---RLGSMERA 253
           P++IT+ ++I G C  G+L  A  +   MK  G   N+V Y+ L+DG C   R+G M +A
Sbjct: 228 PNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKA 287

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +L EM +     SPN VT+  +I  FC    +  AL + + M++ G  P  VT ++L+
Sbjct: 288 DAILKEMVE--NKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLV 345

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C EG L+EA  L+D++++     +   Y++L+    + K L+EA +LF  +   G+ 
Sbjct: 346 NGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLT 405

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  + ++   C  G++ E F L + + + GFL +  +  ++ L++G CR+    E  
Sbjct: 406 PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNAST--YNCLIVGFCREGKMEEVK 463

Query: 434 KLARFM 439
            L   M
Sbjct: 464 NLLNEM 469



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 40/241 (16%)

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY- 326
           SPN++T+ +VI   C  G + +A  ++D M+  G  PN VT +TLI G+C  G + + Y 
Sbjct: 227 SPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYK 286

Query: 327 ------QLIDKVVAGGSVS-----SGGC--------------------------YSSLVV 349
                 ++++  V+  SV+      G C                          Y+SLV 
Sbjct: 287 ADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVN 346

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L    +L EA+ L  +ML+S +KP+ +  + +I   C    + E   L+++I K G   
Sbjct: 347 GLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTP 406

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469
           +V +   + LL G C+     EA  L + ML+K         + ++    + G  E + N
Sbjct: 407 NVIT--FNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKN 464

Query: 470 L 470
           L
Sbjct: 465 L 465


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 174/337 (51%), Gaps = 20/337 (5%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F +NRA E           + +V+    +GC   +    ++ N LC++  + + A+ 
Sbjct: 194 HGLFRHNRASEA----------VALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI-DLALS 242

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L+KM +  + P  +IYN +I   C   ++  A  L   M    + P+++TY S+I+  C
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 302

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N GR  DA  L   M       N+V +SAL+D   + G +  A +L  EM K   D  P+
Sbjct: 303 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PD 360

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY+S+I  FC    + EA  + + M +  C PN VT +TLIKGFC    +DE  +L  
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V +   Y++L+    + +    A+ +F +M++ GV PD +  S+++  LC  G
Sbjct: 421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCR 425
           +V     ++E +++    S ++ DI++  +++ G+C+
Sbjct: 481 KVETALVVFEYLQR----SKMEPDIYTYNIMIEGMCK 513



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 164/334 (49%), Gaps = 8/334 (2%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
            ++I + E  +  G   ++    ++ N  C +++L+  A+ VL KM +    PD +  N+
Sbjct: 98  DLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLS-LALAVLAKMMKLGYEPDIVTLNS 156

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           ++  FC    +  A  L+  M  +   PD  T+ ++I G     R  +A  L   M   G
Sbjct: 157 LLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG 216

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           C  +LV Y  +++G+C+ G ++ AL LL +ME+  G   P VV Y ++I   C    + +
Sbjct: 217 CQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ--GKIEPGVVIYNTIIDALCNYKNVND 274

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           AL +   M+  G  PN VT ++LI+  C  G   +A +L+  ++      +   +S+L+ 
Sbjct: 275 ALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALID 334

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE-DIEKIGFL 408
             V+  +L EAEKL+ +M+   + PD    S +I   C+  ++ E   ++E  I K  F 
Sbjct: 335 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 394

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           + V    ++ L+ G C+     E  +L R M ++
Sbjct: 395 NVV---TYNTLIKGFCKAKRVDEGMELFREMSQR 425



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 131/265 (49%), Gaps = 7/265 (2%)

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           +I+  E M+ +G+     ++ TY  +I  FC   +L  A  +   M + G   ++V  ++
Sbjct: 100 VISLGEQMQNLGI---SHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNS 156

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           LL+G C    +  A+ L+G+M + G    P+  T+ ++I          EA+ ++DRM  
Sbjct: 157 LLNGFCHGNRISDAVSLVGQMVEMG--YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVV 214

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            GC P+ VT   ++ G C  G++D A  L+ K+  G        Y++++  L   K + +
Sbjct: 215 KGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVND 274

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A  LF++M   G++P+ +  + +IR LC  G+  +   L  D+ +     +V +   S L
Sbjct: 275 ALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT--FSAL 332

Query: 420 LLGLCRKNHSVEAAKLARFMLKKRI 444
           +    ++   VEA KL   M+K+ I
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMIKRSI 357



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 4/234 (1%)

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N  +L+DA  LF  M +     ++V +S LL  I ++   +  + L  +M+  G   S N
Sbjct: 58  NDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLG--ISHN 115

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY+ +I  FC +  +  AL +L +M  LG  P+ VT+++L+ GFC    + +A  L+ 
Sbjct: 116 LYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVG 175

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++V  G       +++L+  L R  R  EA  L  +M+  G +PD +   +++  LC  G
Sbjct: 176 QMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRG 235

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            +     L + +E+      V   I++ ++  LC   +  +A  L   M  K I
Sbjct: 236 DIDLALSLLKKMEQGKIEPGV--VIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 3/186 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +AR  + A  V ++M    + PD + Y+ ++   C  G +  A  + + +    + PDI 
Sbjct: 443 QARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIY 502

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  MI+G C AG++ED   LF  +   G   N+V Y+ ++ G CR G  E A  L  EM
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREM 562

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           ++EG    P+  TY ++I+     G    +  ++  M +     +  TI  L+     +G
Sbjct: 563 KEEGP--LPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-LVTNMLHDG 619

Query: 321 NLDEAY 326
            LD+++
Sbjct: 620 RLDKSF 625


>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 199/406 (49%), Gaps = 27/406 (6%)

Query: 40  QKNP-NNIEKTLATVKAKLDSTCVIEVLHRC----FPSQSQMGIRFFIWAALQSSYRHSS 94
            +NP +++E TLA    ++ S  V +VL RC    FP+      RFF+WA     + HS 
Sbjct: 48  HRNPKDDLEHTLAAYSPRVSSNLVEQVLKRCKNLGFPAH-----RFFLWAKRIPDFEHSL 102

Query: 95  FMYNRACEMSRIKQNPSIIID-VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
             Y+   E+    +  +++ D ++EA +     ++ K+  ++F    +A L +EA     
Sbjct: 103 ESYHILVEILGCSKQFALLWDFLIEAREYNYFEITSKVFWIVFRAYSRANLPSEASRAFN 162

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM---KGMGLIDLYPDIITYVSMIKGFC 210
           +M EF ++P     + ++   C++  +  A E     KG G++   P   TY  +++G+ 
Sbjct: 163 RMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAKGFGIV---PSAKTYSILVRGW- 218

Query: 211 NAGRLEDACG---LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
              R+ DA G   +F  M  + C  +L+AY+ALLD +C+ G ++ A ++  EM   G   
Sbjct: 219 --ARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSGDVDGAYKMFQEMGNLG--L 274

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+  ++   I  +C    +  A  +LDRM+     PN  T + +IK  C    +D+AY 
Sbjct: 275 KPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYL 334

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+D+++  G+      Y+S++        +  A KL S+M  +   PD    +++++ L 
Sbjct: 335 LLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLI 394

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
             G+      ++E + +  F  +V +  ++V++ GL RK   +E A
Sbjct: 395 RIGRFDRVTEIWEGMSERKFYPTVAT--YTVMIHGLVRKKGKLEEA 438



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A  +L +M      PD   YN V++L    G      E+ +GM     YP + TY  M
Sbjct: 365 NRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRVTEIWEGMSERKFYPTVATYTVM 424

Query: 206 IKGFC-NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           I G     G+LE+AC  F++M   G          L + +   G M+    L G+ME+  
Sbjct: 425 IHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMERSS 484

Query: 265 GDCS 268
             CS
Sbjct: 485 S-CS 487


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 194/405 (47%), Gaps = 20/405 (4%)

Query: 47   EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM--- 103
            E  L     KL +  V++VL+       +  I+FF W   +  Y H++F +NR  E    
Sbjct: 1616 EHKLREYCGKLSTDIVVDVLNHA--RDVEPTIQFFEWCHGRHGYTHTAFAFNRLLEFLVN 1673

Query: 104  -SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP 162
              + K+   ++I   E+        +     ++   CE      +A+ +L  M + ++  
Sbjct: 1674 KRQYKRAHQMLI--AESKPSSFQANAFTYSTIVRGYCEDGE-TRQALALLEHMKKAEVPA 1730

Query: 163  DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
            +  +YN ++   C+ G    A +L+  M      PDI TY  +I   C  GRLEDA GL 
Sbjct: 1731 NAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLV 1790

Query: 223  KVMKRHGCAANLVAYSALLDGICRLGS----MERALELLGEMEKEGGDCSPNVVTYTSVI 278
            ++M+   C  ++V Y+ L+ G+CR G+    +ERA  L  EM  +G   +P  VTYT VI
Sbjct: 1791 EMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGH--TPTSVTYTVVI 1848

Query: 279  QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                   M ++A  +LD M   GCA + VT + LI  F   G +D+A  L  ++   G +
Sbjct: 1849 DALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCI 1908

Query: 339  SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL-GGQVLEGFC 397
                 Y+S+V    +  +++EA KLF++M A G+ P+G   +  I + CL  G++ +   
Sbjct: 1909 PDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYT-SITDACLKAGRMQDAHA 1967

Query: 398  LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               ++ K G    VD+  +  L+  +C+        +L R ML+K
Sbjct: 1968 YLVEMRKEGL---VDAISYVALISTICKLGKGKLGFQLLREMLEK 2009



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 3/217 (1%)

Query: 116  VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
            + E   ++G   +     V+ +   + ++  +A  VL  M E     D + YN +I  F 
Sbjct: 1828 LFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFA 1887

Query: 176  EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            + G M  A +L   M      PD++TY S++ GFC AG++E+A  LF  MK  G   N  
Sbjct: 1888 KAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGR 1947

Query: 236  AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
             Y+++ D   + G M+ A   L EM KEG     + ++Y ++I   C  G  K    +L 
Sbjct: 1948 TYTSITDACLKAGRMQDAHAYLVEMRKEG---LVDAISYVALISTICKLGKGKLGFQLLR 2004

Query: 296  RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
             M   G  PN VT + + +    E N D+A  +I ++
Sbjct: 2005 EMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQEL 2041


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 148/275 (53%), Gaps = 5/275 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           RP    YN +I   C++GD+ AA  L + M    L PD +TY SMI GF   GRL+D   
Sbjct: 259 RPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVC 318

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F+ MK   C  +++ Y+AL++  C+ G +   LE   EM+  G    PNVV+Y++++  
Sbjct: 319 FFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK--GNGLKPNVVSYSTLVDA 376

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +GMM++A+     M  +G  PN  T ++LI   C  GNL +A++L ++++  G   +
Sbjct: 377 FCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWN 436

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+  L   +R+KEAE+LF KM  +GV P+  + + +I        +     L  
Sbjct: 437 VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLN 496

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +++  G     D  ++   + GLC     +EAAK+
Sbjct: 497 ELKGRGI--KPDLLLYGTFIWGLCSL-EKIEAAKV 528



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 170/369 (46%), Gaps = 5/369 (1%)

Query: 65  VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEG 124
           +LHR         ++ F    + +  R + F YN   +    + +      + E  K  G
Sbjct: 233 LLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG 292

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
            V        + +   K    ++ +    +M +    PD I YN +I  FC+ G +    
Sbjct: 293 LVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGL 352

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           E  + M    L P++++Y +++  FC  G ++ A   +  M+R G   N   Y++L+D  
Sbjct: 353 EFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 412

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C++G++  A  L  EM + G +   NVVTYT++I   C    MKEA  +  +M+  G  P
Sbjct: 413 CKIGNLSDAFRLGNEMLQVGVEW--NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIP 470

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N  + + LI GF    N+D A +L++++   G       Y + +  L   ++++ A+ + 
Sbjct: 471 NLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVM 530

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           ++M   G+K + L  + ++      G   EG  L ++++++    +V +    VL+ GLC
Sbjct: 531 NEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVT--FCVLIDGLC 588

Query: 425 RKNHSVEAA 433
            KN  V  A
Sbjct: 589 -KNKLVSKA 596



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 138/290 (47%), Gaps = 3/290 (1%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           R+M    L+P+ + Y+ ++  FC++G M  A +    M  + L P+  TY S+I   C  
Sbjct: 356 REMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKI 415

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G L DA  L   M + G   N+V Y+AL+DG+C    M+ A EL G+M+  G    PN+ 
Sbjct: 416 GNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG--VIPNLA 473

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           +Y ++I  F     M  AL +L+ ++  G  P+ +   T I G C    ++ A  +++++
Sbjct: 474 SYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEM 533

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
              G  ++   Y++L+    ++    E   L  +M    ++   +   V+I  LC    V
Sbjct: 534 KECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLV 593

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +    +  I    F    ++ I + ++ GLC+ N    A  L   M++K
Sbjct: 594 SKAVDYFNRISN-DFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK 642



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 167/381 (43%), Gaps = 26/381 (6%)

Query: 32  AERFYTHLQKN---PNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQS 88
           A +FY  +++    PN       T  + +D+ C I  L   F   ++M     +   ++ 
Sbjct: 386 AIKFYVDMRRVGLVPNEY-----TYTSLIDANCKIGNLSDAFRLGNEM-----LQVGVEW 435

Query: 89  SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
           +    + + +  C+  R+K+   +   +  A    G + ++     + +   KA+  + A
Sbjct: 436 NVVTYTALIDGLCDAERMKEAEELFGKMDTA----GVIPNLASYNALIHGFVKAKNMDRA 491

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
           + +L ++    ++PD ++Y   I   C    + AA  +M  M    +  + + Y +++  
Sbjct: 492 LELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDA 551

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           +  +G   +   L   MK       +V +  L+DG+C+   + +A++    +  + G   
Sbjct: 552 YFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFG-LQ 610

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
            N   +T++I   C    ++ A  + ++M   G  P+R   ++L+ G   +GN+ EA  L
Sbjct: 611 ANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALAL 670

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC-SVMIRELC 387
            DK+   G       Y+SLV  L    +L++A     +M+  G+ PD + C SV+ +   
Sbjct: 671 RDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYE 730

Query: 388 LGGQVLEGFCLYEDIEKIGFL 408
           LG       C+ E +E   +L
Sbjct: 731 LG-------CIDEAVELQSYL 744


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 172/318 (54%), Gaps = 11/318 (3%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA---- 183
           +V    ++  LC  +R++ EA  +LRKM     RP+ + Y  ++   C  G+ + A    
Sbjct: 162 TVTFTSLVKGLCLGSRIS-EATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLH 220

Query: 184 DELMKGMGL--IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
           +E++ G G   + + P+++ Y ++I   C  G ++    LF  MK  G + ++VAYS+++
Sbjct: 221 EEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSII 280

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G+C  G  E A  L  EM  EG    PNVVT+  +I   C  G M+EA  +L  M   G
Sbjct: 281 HGMCHTGRWEGAKGLFNEMVDEG--VHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRG 338

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
            +P+  T +TLI GFC+EG +D+A  L   + + G  +    Y+ L+    ++ R+ EA+
Sbjct: 339 ESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAK 398

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           KL+ +M+   + P  +  + ++  L   G+V + + L+ ++ K+  L+  +S  +++LL 
Sbjct: 399 KLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEM-KVHDLTP-ESCTYNILLD 456

Query: 422 GLCRKNHSVEAAKLARFM 439
           GLC+ NH  EA +L  ++
Sbjct: 457 GLCKNNHLSEAMELFHYL 474



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 163/332 (49%), Gaps = 5/332 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  +C   R    A  +  +M +  + P+ + +N +I   C+ G M  A+ L+K
Sbjct: 274 VAYSSIIHGMCHTGRWEG-AKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLK 332

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      PD  TY ++I GFC  GR++DA  LF  M+  G   + V+Y+ L++G C+ G
Sbjct: 333 LMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSG 392

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            M  A +L  EM  +  +  P V+TY +++     +G +++A  +   M+     P   T
Sbjct: 393 RMVEAKKLYREMMCK--EIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCT 450

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + L+ G C   +L EA +L   +       S   ++ L+  L + ++++ A +LF+++ 
Sbjct: 451 YNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLS 510

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G++P+ +  +VMI  LC  GQ+     L+  +E+ G   ++ +   + L+ G C+ + 
Sbjct: 511 HEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVT--FNTLMRGFCQNDE 568

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
             +  +L + M +K        +  +V+ L K
Sbjct: 569 MQKVVELLQEMAEKDFSPDASTISIVVDLLSK 600



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 86  LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141
           +Q      +F YN      C   RI     + + + E+   E   VS  ++  I   C+ 
Sbjct: 335 IQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSM-ESKGIETDAVSYNVL--INGYCKS 391

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
            R+  EA  + R+M   ++ P  I YN ++     +G +  A  L   M + DL P+  T
Sbjct: 392 GRMV-EAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCT 450

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  ++ G C    L +A  LF  ++ H    ++  ++ L+DG+C+   +E A EL   + 
Sbjct: 451 YNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLS 510

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            EG    PNV+TYT +I   C  G ++ A  +   ME  GCAPN VT +TL++GFC    
Sbjct: 511 HEG--LEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDE 568

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELV-RTKRLKEAEKLFSKMLASG 371
           + +  +L+ + +A    S      S+VV+L+ + ++ +E   L     A G
Sbjct: 569 MQKVVELLQE-MAEKDFSPDASTISIVVDLLSKDEKYREYLHLLPTFPAQG 618



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 144/293 (49%), Gaps = 20/293 (6%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD--IITYVSMIKGFCNAGRLEDAC 219
           PD     N ++  C+ G +  ++       LID+ P   I ++ +++       R  D  
Sbjct: 53  PDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVI 112

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L+K M   G A + +  + L++  C L  ++  L +LGEM + G   SPN VT+TS+++
Sbjct: 113 SLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGH--SPNTVTFTSLVK 170

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C    + EA G+L +M  +G  PN VT  TL+ G C+ GN   A +L ++++ G    
Sbjct: 171 GLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNG---- 226

Query: 340 SGG----------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           +GG          CY +++  L +   + + ++LF +M   G+ PD +A S +I  +C  
Sbjct: 227 NGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHT 286

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           G+      L+ ++   G   +V +   +VL+  LC+     EA  L + M+++
Sbjct: 287 GRWEGAKGLFNEMVDEGVHPNVVT--FNVLIDALCKAGKMEEANHLLKLMIQR 337



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 134/284 (47%), Gaps = 12/284 (4%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +EG   +V    V+ +   KA    EA  +L+ M +    PDT  YN +I  FC +G + 
Sbjct: 301 DEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRID 360

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L   M    +  D ++Y  +I G+C +GR+ +A  L++ M        ++ Y+ LL
Sbjct: 361 DARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLL 420

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G+ R G +  A  L GEM+    D +P   TY  ++   C    + EA+ +   +E   
Sbjct: 421 TGLFREGKVRDAWNLFGEMKVH--DLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHD 478

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+    + LI G C    ++ A +L +++   G   +   Y+ ++  L ++ +L+ A+
Sbjct: 479 FQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAK 538

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
            LF  M   G  P+ +  + ++R          GFC  ++++K+
Sbjct: 539 DLFLGMEEKGCAPNLVTFNTLMR----------GFCQNDEMQKV 572



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 2/195 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A  +  +M   DL P++  YN ++   C+   +  A EL   +   D  P I  +  +I
Sbjct: 431 DAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLI 490

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C A ++E A  LF  +   G   N++ Y+ ++ G+C+ G +E A +L   ME++G  
Sbjct: 491 DGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKG-- 548

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C+PN+VT+ ++++ FC    M++ + +L  M     +P+  TIS ++     +    E  
Sbjct: 549 CAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYL 608

Query: 327 QLIDKVVAGGSVSSG 341
            L+    A G    G
Sbjct: 609 HLLPTFPAQGQTGRG 623


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 161/308 (52%), Gaps = 7/308 (2%)

Query: 128 SVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           SV    ++ N LC++ +L  +A   +  M    ++P+ + YN +I  +C +G +  A  +
Sbjct: 190 SVVTFNIMINVLCKEGKL-KKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMI 248

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
              M    + PD  TY S I G C  G+LE+A G+ + MK  G     V Y+ L+DG C 
Sbjct: 249 FDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCN 308

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G++E A +   +M +EG    P V TY  +I        M EA GI+  M   G  P+ 
Sbjct: 309 KGNLEMAFDYRDKMVREG--LMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDS 366

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT + LI G+C  GN+ +A+ L D++++ G   +   Y+SL+  L +  R+K+A+ LF K
Sbjct: 367 VTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEK 426

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           ++  G+ PD +  + +I   C  G +   F + ++++++  +   D    + L+ G CR+
Sbjct: 427 IVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVP--DEVTFNTLMQGRCRE 484

Query: 427 NHSVEAAK 434
              VEAA+
Sbjct: 485 G-KVEAAR 491



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 163/310 (52%), Gaps = 5/310 (1%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I  +C++ +L  EA  +L KM E  LRP  + YN +I  +C KG++  A +    M    
Sbjct: 268 ISGMCKEGKL-EEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREG 326

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           L P + TY  +I       ++++A G+ K M   G   + V Y+ L++G CR G++++A 
Sbjct: 327 LMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAF 386

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L  EM  +G    P  VTYTS+I +   +G MK+A  + +++   G  P+ +  + LI 
Sbjct: 387 TLHDEMISKG--IQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALID 444

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  GN+D A+ ++ ++     V     +++L+    R  +++ A +L  +M + G+KP
Sbjct: 445 GHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKP 504

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D ++ + +I      G + + F + +++  IGF  ++ +  ++ L+ GLC+      A +
Sbjct: 505 DHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLT--YNALIQGLCKNEEGDHAEQ 562

Query: 435 LARFMLKKRI 444
           L + M+ K I
Sbjct: 563 LLKEMISKGI 572



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 154/285 (54%), Gaps = 2/285 (0%)

Query: 91  RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150
           R ++  YN   +    K N  +  D  +    EG + +V    ++ +        +EA  
Sbjct: 293 RPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADG 352

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           ++++M E  L PD++ YN +I  +C  G++  A  L   M    + P  +TY S+I    
Sbjct: 353 IIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLS 412

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             GR++ A  LF+ + R G   +L+ ++AL+DG C  G+M+RA  +L EM++      P+
Sbjct: 413 KRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQM--KVVPD 470

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
            VT+ +++Q  C +G ++ A  +++ M++ G  P+ ++ +TLI G+   G++ +A+++ D
Sbjct: 471 EVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRD 530

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           ++++ G   +   Y++L+  L + +    AE+L  +M++ G+ P+
Sbjct: 531 EMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPN 575



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 166/342 (48%), Gaps = 12/342 (3%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMK--VIFNL-----CEKARLANEAMWVLRKMPEFDLRPD 163
           S +  + E + E G    V  +K  V+++L     CE  R  ++A      M    + P 
Sbjct: 97  SGVYSIREVFNELGVARGVLGIKTYVLYDLLIRACCELKR-GDDAFECFDMMKGKGVIPH 155

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
               N+++ LF +      A  L   M  + +   ++T+  MI   C  G+L+ A     
Sbjct: 156 VHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIG 215

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
           +M+  G   N+V Y+ ++ G C  G +E A  +   M+  G    P+  TY S I   C 
Sbjct: 216 LMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRG--VKPDSYTYGSFISGMCK 273

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
           +G ++EA G+L++M+ +G  P  VT +TLI G+C +GNL+ A+   DK+V  G + +   
Sbjct: 274 EGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVST 333

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+ L+  L    ++ EA+ +  +M   G+ PD +  +++I   C  G V + F L++++ 
Sbjct: 334 YNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMI 393

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
             G   +  +  ++ L+  L ++    +A  L   +++K I+
Sbjct: 394 SKGIQPTRVT--YTSLIYVLSKRGRMKQADDLFEKIVRKGIF 433



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 120/233 (51%), Gaps = 2/233 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++   E+G V       ++ N   +     +A  +  +M    ++P  + Y ++I +  
Sbjct: 353 IIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLS 412

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G M  AD+L + +    ++PD+I + ++I G C  G ++ A  + K M +     + V
Sbjct: 413 KRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEV 472

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L+ G CR G +E A EL+ EM+  G    P+ ++Y ++I  +  +G MK+A  + D
Sbjct: 473 TFNTLMQGRCREGKVEAARELIEEMKSRG--IKPDHISYNTLISGYSKRGDMKDAFRVRD 530

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            M ++G  P  +T + LI+G C     D A QL+ ++++ G   +   Y SL+
Sbjct: 531 EMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLI 583



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 6/195 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I+ L ++ R+  +A  +  K+    + PD I++N +I   C  G+M  A  ++K
Sbjct: 402 VTYTSLIYVLSKRGRM-KQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLK 460

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M  + + PD +T+ ++++G C  G++E A  L + MK  G   + ++Y+ L+ G  + G
Sbjct: 461 EMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRG 520

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            M+ A  +  EM   G   +P ++TY ++IQ  C       A  +L  M + G  PN  T
Sbjct: 521 DMKDAFRVRDEMLSIG--FNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNT 578

Query: 309 ISTLIKGFCVEGNLD 323
             +LI+G    GN++
Sbjct: 579 YLSLIEGI---GNVE 590


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 162/329 (49%), Gaps = 12/329 (3%)

Query: 113 IIDVVEAYK---EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           I+D    +K   E GC  +V     + +   K    +EA+ +L KM E   R +T+ Y+ 
Sbjct: 224 ILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYST 283

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           V+    + G M  A  +++ M      PD +TY ++I GF    RL +A GL + M   G
Sbjct: 284 VVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAG 343

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              ++V Y+ L  G+CR G  + A+E+L  M   G  C+PN +TY+S++   C  G + E
Sbjct: 344 FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG--CAPNAITYSSIVDGLCKAGRVTE 401

Query: 290 ALGILDRM---EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           ALG  ++M   E +  AP+ +  S LI G C  G +DEAY+ +++++  G +     +S 
Sbjct: 402 ALGYFEKMARDEVV--APHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSI 459

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+  L    R+    +LF  M   G  PD +  + ++  LC   +V E F L++ +   G
Sbjct: 460 LINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDG 519

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
              S D      ++ GL   N   +A ++
Sbjct: 520 L--SPDRSTRRTMIHGLLEVNRDEDAKRI 546



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 168/328 (51%), Gaps = 5/328 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E     GC  +      + N       + EA  +L +M      P+ I +  +I+  C
Sbjct: 123 LLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLC 182

Query: 176 EKGDMIAADELMKGMGLID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           ++G++ AA  ++  M +I+  L PD+IT+ S++ G C   R+ DA  +FK     GC  N
Sbjct: 183 KEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPN 242

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V YS L+DG+ ++  M+ AL+LL +M + G  C  N VTY++V+      G M++A+ +
Sbjct: 243 VVTYSTLIDGLSKMAKMDEALQLLAKMVELG--CRANTVTYSTVVDGLLKVGRMEDAVVV 300

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L +M   GC P+ VT +TLI GF     L EA  L+ +++  G   S   Y++L   L R
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           + R  EA ++   M A G  P+ +  S ++  LC  G+V E    +E + +   ++    
Sbjct: 361 SGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAP-HV 419

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLK 441
             +S L+ GLC+     EA +    M++
Sbjct: 420 IAYSALIDGLCKAGKIDEAYEFLERMIR 447



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 165/309 (53%), Gaps = 8/309 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K+R  ++A+ + ++M +  + PD + Y  +I    ++  +  A +L +     
Sbjct: 1   MIDGLC-KSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 59

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAANLVAYSALLDGICRLGSMER 252
             +P ++TY +MI G C  GR+E+A  L+  M  H G    +V YS L+DG+CR   +++
Sbjct: 60  GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDK 119

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
             +LL EM   G  C+PN VTY +++    G+G  KEA  +L++M A GC P  +T   +
Sbjct: 120 GCKLLEEMAGRG--CAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLI 177

Query: 313 IKGFCVEGNLDEAYQLIDK--VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           IKG C EG ++ A++++D+  ++  G       ++S++  L + +R+ +A  +F + L  
Sbjct: 178 IKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALER 237

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G +P+ +  S +I  L    ++ E   L   + ++G     ++  +S ++ GL +     
Sbjct: 238 GCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG--CRANTVTYSTVVDGLLKVGRME 295

Query: 431 EAAKLARFM 439
           +A  + R M
Sbjct: 296 DAVVVLRQM 304



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 167/349 (47%), Gaps = 3/349 (0%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           D+ E  + +GC  +V     + + LC+  R+ N           F  RP  + Y+ +I  
Sbjct: 51  DLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDG 110

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C   ++    +L++ M      P+ +TY +++      GR ++A  L + M  +GC   
Sbjct: 111 LCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPE 170

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           L+ +  ++ G+C+ G +E A  ++ EM       SP+V+T+ SV+   C +  + +A  +
Sbjct: 171 LITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNV 230

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
             R    GC PN VT STLI G      +DEA QL+ K+V  G  ++   YS++V  L++
Sbjct: 231 FKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLK 290

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             R+++A  +  +M  +G  PD +  + +I       ++ E   L  ++ + GF  SV +
Sbjct: 291 VGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVT 350

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
             ++ L  GLCR     EA ++  +M  +           IV+ L K+G
Sbjct: 351 --YTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAG 397



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 3/239 (1%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           MI G C + +++ A  LFK M       ++V Y AL+DG+ +   ++ A +L  E   +G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME-ALGCAPNRVTISTLIKGFCVEGNLD 323
             C P VVTY ++I   C  G ++ AL + D M    G  P  VT STLI G C +  +D
Sbjct: 61  --CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVD 118

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +  +L++++   G   +   Y++LV  L+   R KEA  L  +M A+G  P+ +   ++I
Sbjct: 119 KGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLII 178

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           + LC  G++   F + +++  I    S D    + +L GLC++   ++A  + +  L++
Sbjct: 179 KGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALER 237



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 1/126 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  ++ +EA   L +M      PD + ++ +I   C+ G +    EL +GM   
Sbjct: 425 LIDGLCKAGKI-DEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAER 483

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD++TY +++   C A R+++A  LF+ M+  G + +      ++ G+  +   E A
Sbjct: 484 GCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDA 543

Query: 254 LELLGE 259
             +  E
Sbjct: 544 KRIQDE 549


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 175/371 (47%), Gaps = 35/371 (9%)

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
           K+  S ++ +       G   +V  + ++ N   +      A+ VL KM +  ++PD I 
Sbjct: 105 KKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAIT 164

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           +N +I   C +G++  A  L   M      PD+I+Y ++I G C +G    A  L + M+
Sbjct: 165 FNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKME 224

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-------------GDCS----- 268
             GC  NLVAY+ ++D +C+   +  A++LL EM   G             G CS     
Sbjct: 225 EKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLN 284

Query: 269 ---------------PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
                          PN VT+T ++   C +GM+ EA  + + M   G  PN  T + L+
Sbjct: 285 EATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALM 344

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C+   +DEA +++D +V  G       Y+ L+    + +RL EA+ L  +M    + 
Sbjct: 345 DGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELT 404

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  S +++ LC  G+  E   L++++   G L   D   +S LL GLC+  H  EA 
Sbjct: 405 PDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLP--DLMTYSTLLDGLCKHGHLDEAL 462

Query: 434 KLARFMLKKRI 444
           KL + M + +I
Sbjct: 463 KLLKSMQESKI 473



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 180/370 (48%), Gaps = 37/370 (10%)

Query: 109 NPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           N S+ + ++   +E+GC  + V    +I +LC K  L N+AM +L +M +  + PD + Y
Sbjct: 212 NTSMALQLLRKMEEKGCKPNLVAYTTIIDSLC-KDTLVNDAMDLLSEMVDRGIPPDVVTY 270

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           + ++  FC  G +  A  L   M   ++ P+ +T+  ++ G C  G + +A  +F+ M +
Sbjct: 271 STILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTK 330

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-------------GDC------- 267
            G   N   Y+AL+DG C    M+ A ++L  M  +G             G C       
Sbjct: 331 KGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDE 390

Query: 268 -------------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
                        +P+ VTY++++Q  C  G  +EAL +   M + G  P+ +T STL+ 
Sbjct: 391 AKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLD 450

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G+LDEA +L+  +           Y+ L+  +    +L+ A++LFSK+ A G++P
Sbjct: 451 GLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQP 510

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
                ++MI+ L   G   E + L+  +E  GFL +  S  ++V++ G  +   S  A +
Sbjct: 511 TIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCS--YNVIIQGFLQNQDSSTAIR 568

Query: 435 LARFMLKKRI 444
           L   M+ KR 
Sbjct: 569 LIDEMVGKRF 578



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 140/297 (47%), Gaps = 4/297 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+    +M   + RP  + +   +    +K        L   M L  +  ++ +   +
Sbjct: 74  DDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNIL 133

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I   C    +  A  +   M + G   + + ++ L++G C  G ++ A+ L  EM + G 
Sbjct: 134 INCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGH 193

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+V++Y++VI   C  G    AL +L +ME  GC PN V  +T+I   C +  +++A
Sbjct: 194 --QPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDA 251

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L+ ++V  G       YS+++        L EA  LF++M+   V P+ +  ++++  
Sbjct: 252 MDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDG 311

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC  G V E  C++E + K G  +  ++  ++ L+ G C  N   EA K+   M+ K
Sbjct: 312 LCKEGMVSEARCVFEAMTKKG--AEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDK 366



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 112/252 (44%), Gaps = 4/252 (1%)

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N+  ++DA   F  M R     ++V +   L  I +       + L  +M+  G   + N
Sbjct: 69  NSISIDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFG--VTHN 126

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           V +   +I   C    +  A+ +L +M  LG  P+ +T +TLI G C+EG + EA  L +
Sbjct: 127 VYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFN 186

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++V  G       YS+++  L ++     A +L  KM   G KP+ +A + +I  LC   
Sbjct: 187 EMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDT 246

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
            V +   L  ++   G    V +  +S +L G C   H  EA  L   M+ + +      
Sbjct: 247 LVNDAMDLLSEMVDRGIPPDVVT--YSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVT 304

Query: 451 VDKIVEHLKKSG 462
              +V+ L K G
Sbjct: 305 FTILVDGLCKEG 316



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 7/207 (3%)

Query: 92  HS-SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150
           HS + + N  C+  R+ +  S+++++ E       V    +M+    LC+  R   EA+ 
Sbjct: 373 HSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQ---GLCQVGR-PQEALN 428

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           + ++M    L PD + Y+ ++   C+ G +  A +L+K M    + PDI+ Y  +I+G  
Sbjct: 429 LFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMF 488

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
            AG+LE A  LF  +   G    +  Y+ ++ G+ + G  + A EL  +ME +G    PN
Sbjct: 489 IAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDG--FLPN 546

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRM 297
             +Y  +IQ F        A+ ++D M
Sbjct: 547 SCSYNVIIQGFLQNQDSSTAIRLIDEM 573


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 163/294 (55%), Gaps = 4/294 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +AM +L +M +    PD + YN V+   C++G +  A E +K +      P+ ++Y  ++
Sbjct: 10  QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVL 69

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           KG C A R EDA  L   M + GC  N+V ++ L+  +CR G +E ALE+L ++ K G  
Sbjct: 70  KGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYG-- 127

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C+PN ++Y  ++  FC +  M +A+  LD M + GC P+ V+ +TL+   C  G +D A 
Sbjct: 128 CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAV 187

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+ ++   G       Y++++  L +  + KEA +L ++M++ G++PD +  S +   L
Sbjct: 188 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGL 247

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           C   ++ +    +  ++ +G     ++ +++ ++LGLC++  +  A  L  +M+
Sbjct: 248 CREDRIEDAIRAFGKVQDMGI--RPNTVLYNAIILGLCKRRETHSAIDLFAYMI 299



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 156/289 (53%), Gaps = 8/289 (2%)

Query: 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEF 158
            C+ S  KQ     + +++  +++GC   +    V+ N +C++ R+ ++A+  L+ +P +
Sbjct: 2   TCKRSGYKQ----AMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV-DDAIEFLKNLPSY 56

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
              P+T+ YN V++  C       A+ELM  MG     P+++T+  +I   C  G +E A
Sbjct: 57  GCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPA 116

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             + + + ++GC  N ++Y+ LL   C+   M++A+  L  M   G  C P++V+Y +++
Sbjct: 117 LEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG--CYPDIVSYNTLL 174

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C  G +  A+ +L +++  GCAP  ++ +T+I G    G   EA +L++++V+ G  
Sbjct: 175 TALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ 234

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
                YS++   L R  R+++A + F K+   G++P+ +  + +I  LC
Sbjct: 235 PDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLC 283



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 131/251 (52%), Gaps = 2/251 (0%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           ++GC  +V    ++ +   +  L   A+ VL ++P++   P+++ YN ++  FC++  M 
Sbjct: 90  QKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMD 149

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A   +  M     YPDI++Y +++   C +G ++ A  L   +K  GCA  L++Y+ ++
Sbjct: 150 KAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVI 209

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG+ + G  + ALELL EM  +G    P+++TY+++    C +  +++A+    +++ +G
Sbjct: 210 DGLTKAGKTKEALELLNEMVSKG--LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMG 267

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN V  + +I G C       A  L   ++  G + +   Y+ L+  L     +KEA 
Sbjct: 268 IRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEAR 327

Query: 362 KLFSKMLASGV 372
            L  ++ + GV
Sbjct: 328 DLLDELCSRGV 338


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 169/316 (53%), Gaps = 4/316 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CV  V    ++     K     +AM +L +M +    PD + YN V+   C++G +  A 
Sbjct: 189 CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAI 248

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           E +K +      P+ ++Y  ++KG C A R EDA  L   M + GC  N+V ++ L+  +
Sbjct: 249 EFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFL 308

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           CR G +E ALE+L ++ K G  C+PN ++Y  ++  FC +  M +A+  LD M + GC P
Sbjct: 309 CRKGLVEPALEVLEQIPKYG--CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYP 366

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           + V+ +TL+   C  G +D A +L+ ++   G       Y++++  L +  + KEA +L 
Sbjct: 367 DIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELL 426

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           ++M++ G++PD +  S +   LC   ++ +    +  ++ +G     ++ +++ ++LGLC
Sbjct: 427 NEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRP--NTVLYNAIILGLC 484

Query: 425 RKNHSVEAAKLARFML 440
           ++  +  A  L  +M+
Sbjct: 485 KRRETHSAIDLFAYMI 500



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 165/345 (47%), Gaps = 43/345 (12%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           + +    C+ S  KQ     + +++  +++GC   +    V+ N +C++ R+ ++A+  L
Sbjct: 197 TILLEATCKRSGYKQ----AMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV-DDAIEFL 251

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT----------- 201
           + +P +   P+T+ YN V++  C       A+ELM  MG     P+++T           
Sbjct: 252 KNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRK 311

Query: 202 ------------------------YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
                                   Y  ++  FC   +++ A     +M   GC  ++V+Y
Sbjct: 312 GLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSY 371

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + LL  +CR G ++ A+ELL +++ +G  C+P +++Y +VI      G  KEAL +L+ M
Sbjct: 372 NTLLTALCRSGEVDVAVELLHQLKDKG--CAPVLISYNTVIDGLTKAGKTKEALELLNEM 429

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
            + G  P+ +T ST+  G C E  +++A +   KV   G   +   Y+++++ L + +  
Sbjct: 430 VSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRET 489

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
             A  LF+ M+ +G  P+    +++I  L   G + E   L +++
Sbjct: 490 HSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 534



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 133/252 (52%), Gaps = 4/252 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           ++GC  +V    ++ + LC K  L   A+ VL ++P++   P+++ YN ++  FC++  M
Sbjct: 291 QKGCPPNVVTFNMLISFLCRKG-LVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKM 349

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A   +  M     YPDI++Y +++   C +G ++ A  L   +K  GCA  L++Y+ +
Sbjct: 350 DKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV 409

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG+ + G  + ALELL EM  +G    P+++TY+++    C +  +++A+    +++ +
Sbjct: 410 IDGLTKAGKTKEALELLNEMVSKG--LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM 467

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN V  + +I G C       A  L   ++  G + +   Y+ L+  L     +KEA
Sbjct: 468 GIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 527

Query: 361 EKLFSKMLASGV 372
             L  ++ + GV
Sbjct: 528 RDLLDELCSRGV 539



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 149/310 (48%), Gaps = 12/310 (3%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           RPD      +I+     G    A  ++   G     PD++ Y +M+ G+C AG+L+ A  
Sbjct: 93  RPDAGTCAALIKKLSASGRTAEARRVLAACG-----PDVMAYNAMVAGYCGAGQLDAARR 147

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M       +   Y+ L+ G+C  G    AL +L EM +    C P+VVTYT +++ 
Sbjct: 148 LVAEMPVE---PDAYTYNTLIRGLCGRGRTANALAVLDEMLRR--RCVPDVVTYTILLEA 202

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +   K+A+ +LD M   GC P+ VT + ++ G C EG +D+A + +  + + G   +
Sbjct: 203 TCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPN 262

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ ++  L   +R ++AE+L  +M   G  P+ +  +++I  LC  G V     + E
Sbjct: 263 TVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLE 322

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
            I K G   + +S  ++ LL   C++    +A      M+ +  +      + ++  L +
Sbjct: 323 QIPKYG--CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 380

Query: 461 SGDEELITNL 470
           SG+ ++   L
Sbjct: 381 SGEVDVAVEL 390


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 161/326 (49%), Gaps = 5/326 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ +L  +A   +  M    ++P+ + YN +I   C +G    A  + + M    L P
Sbjct: 226 LCKEGKL-KKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEP 284

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D  TY S I G C  GRLE+A GL   M   G   N V Y+AL+DG C  G +++A    
Sbjct: 285 DCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYR 344

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM  +G   S  +VTY   I     +G M +A  ++  M   G  P+ VT + LI G+C
Sbjct: 345 DEMISKGIMAS--LVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYC 402

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+   A+ L+D++V  G   +   Y+SL+  L +  R+KEA+ LFSK+   G+ PD +
Sbjct: 403 RCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDII 462

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I   C  G +   F L ++++ +  L   D   ++ L+ G CR+    EA +L  
Sbjct: 463 VFNALIDGHCANGNIDRAFQLLKEMDNMKVLP--DEITYNTLMQGYCREGKVEEARQLLD 520

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGD 463
            M ++ I       + ++    K GD
Sbjct: 521 EMKRRGIKPDHISYNTLISGYSKRGD 546



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 167/331 (50%), Gaps = 5/331 (1%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I  LC++ RL  EA  ++ KM E  L P+ + YN +I  +C KGD+  A      M    
Sbjct: 293 ISGLCKEGRL-EEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKG 351

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           +   ++TY   I      GR+ DA  + K M+  G   + V ++ L++G CR G  +RA 
Sbjct: 352 IMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAF 411

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            LL EM  +G    P +VTYTS+I +   +  MKEA  +  +++  G  P+ +  + LI 
Sbjct: 412 GLLDEMVGKG--IQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALID 469

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  GN+D A+QL+ ++     +     Y++L+    R  +++EA +L  +M   G+KP
Sbjct: 470 GHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKP 529

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D ++ + +I      G + + F + +++   GF  ++ +  ++ L+ GLC+      A +
Sbjct: 530 DHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILT--YNALIQGLCKNQEGEHAEE 587

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           L + M+ K I         I+E ++   D E
Sbjct: 588 LLKEMVSKGITPDDSTYLSIIEAMETVDDLE 618



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 148/266 (55%), Gaps = 6/266 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN----EAMWVLRKMPEFDLRPDTIIYNN 169
           +D   AY++E     +    V +NL   A        +A  ++++M E  + PD + +N 
Sbjct: 337 LDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNI 396

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I  +C  GD   A  L+  M    + P ++TY S+I       R+++A  LF  +++ G
Sbjct: 397 LINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEG 456

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              +++ ++AL+DG C  G+++RA +LL EM+       P+ +TY +++Q +C +G ++E
Sbjct: 457 LLPDIIVFNALIDGHCANGNIDRAFQLLKEMD--NMKVLPDEITYNTLMQGYCREGKVEE 514

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  +LD M+  G  P+ ++ +TLI G+   G++ +A+++ D+++  G   +   Y++L+ 
Sbjct: 515 ARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQ 574

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPD 375
            L + +  + AE+L  +M++ G+ PD
Sbjct: 575 GLCKNQEGEHAEELLKEMVSKGITPD 600



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 182/400 (45%), Gaps = 34/400 (8%)

Query: 37  THLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFM 96
           +HLQ +P++++  LAT      S+  I VL+R  PS  +  I       L  +  + +  
Sbjct: 82  SHLQNHPHSLD--LAT------SSLAICVLYR-LPS-PKPSINLIQRLILSPTCTNRTIF 131

Query: 97  YNRACEMSRIKQNPSIIIDV-VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
              A    R+    ++I D+ V AY                  CE  +  NEA+     +
Sbjct: 132 DELALARDRVDAKTTLIFDLLVRAY------------------CELKK-PNEALECFYLI 172

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            E    P+    N ++ LF +      A  L   M  +++   + T+  MI   C  G+L
Sbjct: 173 KEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKL 232

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           + A      M+  G   N+V Y+ ++ G C  G  +RA  +   M+ +G    P+  TY 
Sbjct: 233 KKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKG--LEPDCYTYN 290

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           S I   C +G ++EA G++ +M   G  PN VT + LI G+C +G+LD+AY   D++++ 
Sbjct: 291 SFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISK 350

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G ++S   Y+  +  L    R+ +A+ +  +M   G+ PD +  +++I   C  G     
Sbjct: 351 GIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRA 410

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           F L +++   G   ++ +    + +LG  ++N   EA  L
Sbjct: 411 FGLLDEMVGKGIQPTLVTYTSLIYVLG--KRNRMKEADAL 448



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 140/299 (46%), Gaps = 15/299 (5%)

Query: 52  TVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSS--YRHSSFMYNRACEMSRIKQN 109
           T  A +D  C    L + +  + +M I   I A+L +   + H+ FM  R  +       
Sbjct: 323 TYNALIDGYCNKGDLDKAYAYRDEM-ISKGIMASLVTYNLFIHALFMEGRMGDAD----- 376

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
                ++++  +E+G +       ++ N   +   A  A  +L +M    ++P  + Y +
Sbjct: 377 -----NMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTS 431

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I +  ++  M  AD L   +    L PDII + ++I G C  G ++ A  L K M    
Sbjct: 432 LIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMK 491

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              + + Y+ L+ G CR G +E A +LL EM++ G    P+ ++Y ++I  +  +G MK+
Sbjct: 492 VLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRG--IKPDHISYNTLISGYSKRGDMKD 549

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           A  + D M   G  P  +T + LI+G C     + A +L+ ++V+ G       Y S++
Sbjct: 550 AFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSII 608



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 107/200 (53%), Gaps = 7/200 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I+ L ++ R+  EA  +  K+ +  L PD I++N +I   C  G++  A +L+K
Sbjct: 427 VTYTSLIYVLGKRNRM-KEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLK 485

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M  + + PD ITY ++++G+C  G++E+A  L   MKR G   + ++Y+ L+ G  + G
Sbjct: 486 EMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRG 545

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            M+ A  +  EM   G D  P ++TY ++IQ  C     + A  +L  M + G  P+  T
Sbjct: 546 DMKDAFRVRDEMMTTGFD--PTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDST 603

Query: 309 ISTLIKGF----CVEGNLDE 324
             ++I+       +EGN D+
Sbjct: 604 YLSIIEAMETVDDLEGNDDK 623


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 185/432 (42%), Gaps = 74/432 (17%)

Query: 21  IFALHFTTASPAERFYTHL---------QKNPNNIEKTLATVKAKLDSTCVIEVLHRCFP 71
           IF L F + S A   + +L         Q++  N  K +    + L    V ++L     
Sbjct: 23  IFRLPFVSYSNANNSFQYLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKIL-LGLR 81

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKE--------- 122
              ++ ++FF WA  Q  +RH++  Y   C +  +     +  D  +  KE         
Sbjct: 82  EDPKLALKFFKWAGSQVGFRHTTESY---CIIVHLVFRARMYTDAHDTVKEVIMNSRMDM 138

Query: 123 ---------------EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF--------- 158
                            CV    +  V+F++  +  L  EA     +M  F         
Sbjct: 139 GFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSC 198

Query: 159 --------------------------DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
                                      + P    YN +I   C++GD+  +  L   M  
Sbjct: 199 NFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMRE 258

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           + L PD++TY S+I G+   G LE+   LF  MK  GC  +++ Y+ L++  C+   M R
Sbjct: 259 MGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPR 318

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A E   EM+  G    PNVVTY+++I  FC +GMM+ A+ +L  M   G  PN  T ++L
Sbjct: 319 AFEYFSEMKNNG--LKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSL 376

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I   C  GNL EA++L++ ++  G   +   Y++L+  L +  R+ EAE++F  ML  G+
Sbjct: 377 IDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGI 436

Query: 373 KPDGLACSVMIR 384
            P+    + ++ 
Sbjct: 437 SPNQQVYTALVH 448



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 13/267 (4%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++  L N    +  +M E  L PD + YN++I  + + G +     L   M  +   P
Sbjct: 240 LCKEGDLENSRR-LFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVP 298

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DIITY  +I  +C   ++  A   F  MK +G   N+V YS L+D  C+ G M+ A++LL
Sbjct: 299 DIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLL 358

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M + G    PN  TYTS+I   C  G + EA  +L+ M   G   N VT + L+ G C
Sbjct: 359 XDMRRTG--LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLC 416

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G + EA ++   ++  G   +   Y++LV   ++ +R+++A K+  +M    +KPD  
Sbjct: 417 KAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD-- 474

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEK 404
                   L L G ++ G C    +E+
Sbjct: 475 --------LILYGSIIWGHCSQRKLEE 493



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 135/275 (49%), Gaps = 2/275 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA    +AM +L++M E +++PD I+Y ++I   C +  +     +++ M    +  + +
Sbjct: 452 KAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPV 511

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
              ++I  +  AG+  DA   F+ M+  G  A +V Y  L+DG+C  G +E A++    M
Sbjct: 512 ISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRM 571

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G    PNV  YTS+I   C    ++ A  + D M+  G  P+    + LI G    G
Sbjct: 572 LSLG--LQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHG 629

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           NL EA  LI ++           Y+SLV    +   L +A K F++M+  G+ P+ + C 
Sbjct: 630 NLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCI 689

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            ++RE    GQ+ E   L  ++E++ +    D+ +
Sbjct: 690 CLLREYYKRGQLDEAIELKNEMERMAYSFEFDAQL 724



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 154/314 (49%), Gaps = 5/314 (1%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K+ GCV  +     + N   K      A     +M    L+P+ + Y+ +I  FC++G M
Sbjct: 292 KDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMM 351

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A +L+  M    L P+  TY S+I   C AG L +A  L   M + G   N+V Y+AL
Sbjct: 352 QGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTAL 411

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           LDG+C+ G M  A E+   M K+G   SPN   YT+++  +     M++A+ IL +M   
Sbjct: 412 LDGLCKAGRMIEAEEVFRSMLKDG--ISPNQQVYTALVHGYIKAERMEDAMKILKQMTEC 469

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
              P+ +   ++I G C +  L+E   +++++ + G  ++    ++++    +  +  +A
Sbjct: 470 NIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDA 529

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
              F +M   GV+   +   V+I  LC  G V      +  +  +G   +V   +++ L+
Sbjct: 530 LNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNV--AVYTSLI 587

Query: 421 LGLCRKNHSVEAAK 434
            GLC  N+ +E+AK
Sbjct: 588 DGLC-XNNCIESAK 600



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 139/304 (45%), Gaps = 4/304 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA    EA  +L  M +  ++ + + Y  ++   C+ G MI A+E+ + M    + P+  
Sbjct: 382 KAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQ 441

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            Y +++ G+  A R+EDA  + K M       +L+ Y +++ G C    +E    +L EM
Sbjct: 442 VYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEM 501

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           +  G   S N V  T++I  +   G   +AL     M+ +G     VT   LI G C  G
Sbjct: 502 KSRG--ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAG 559

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            ++ A     ++++ G   +   Y+SL+  L     ++ A+KLF +M   G+ PD  A +
Sbjct: 560 IVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFT 619

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            +I      G + E   L   + ++      D  +++ L+ G  +     +A K    M+
Sbjct: 620 ALIDGNLKHGNLQEALVLISRMTELAI--EFDLHVYTSLVSGFSQCGELHQARKFFNEMI 677

Query: 441 KKRI 444
           +K I
Sbjct: 678 EKGI 681



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 2/213 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  K  G   +  +   I +   KA  +++A+   ++M +  +    + Y  +I   C
Sbjct: 497 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLC 556

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           E G +  A +    M  + L P++  Y S+I G C    +E A  LF  M+  G   ++ 
Sbjct: 557 EAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDIT 616

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           A++AL+DG  + G+++ AL L+  M +   +   +V  YTS++  F   G + +A    +
Sbjct: 617 AFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHV--YTSLVSGFSQCGELHQARKFFN 674

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
            M   G  P  V    L++ +   G LDEA +L
Sbjct: 675 EMIEKGILPEEVLCICLLREYYKRGQLDEAIEL 707


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 138/256 (53%), Gaps = 2/256 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K +  ++AM +L KM E  L P  + YN++I + C+ G   +A +L+  +    L PD  
Sbjct: 436 KRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQW 495

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY   I   C + R+E+AC LF  +K  G  AN V Y+AL+DG C+ G ++ A+ LL  M
Sbjct: 496 TYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERM 555

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             E  DC PN  TY S+I   C +G ++E L +++ M  +G  P   T + LI+    EG
Sbjct: 556 HSE--DCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREG 613

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           + D A ++ +++V+ G       Y++ +     +  +KEAE + ++M+ +GV PD L  +
Sbjct: 614 DFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYT 673

Query: 381 VMIRELCLGGQVLEGF 396
           ++I      G   + F
Sbjct: 674 LLISAYERLGLAYDAF 689



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 168/362 (46%), Gaps = 39/362 (10%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+    +E  C  +V    V+ +   K R  +E+  +L +M E  L P  + YN +IR 
Sbjct: 339 MDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRG 398

Query: 174 FCEKGDMIAADELM-----------------------------KGMGLID------LYPD 198
           +CE+G + AA E++                             K M L+       L P 
Sbjct: 399 YCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPS 458

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++TY S+I   C AG  + A  L  ++K +G   +   YS  +D +C+   ME A +L  
Sbjct: 459 LVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFN 518

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
            ++++G     N V YT++I   C  G + EA+ +L+RM +  C PN  T ++LI G C 
Sbjct: 519 SLKEKG--IKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCK 576

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           EG + E   +++ +   G   +   Y+ L+ E++R      A ++F++M++ G KPD   
Sbjct: 577 EGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYT 636

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            +  I   C  G V E   +   + + G +   DS  +++L+    R   + +A  + + 
Sbjct: 637 YTAFIHTYCTSGNVKEAEGMMARMIEAGVMP--DSLTYTLLISAYERLGLAYDAFNVLKR 694

Query: 439 ML 440
           ML
Sbjct: 695 ML 696



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 143/298 (47%), Gaps = 4/298 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA   + K+ +  L PD+  Y ++I  +C   D+ +A ++   M       + ++Y ++I
Sbjct: 232 EANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTII 291

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C AGR+++   LFK M+   C   +  Y+ ++  +         ++L  EM +    
Sbjct: 292 HGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERS-- 349

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PNV TYT ++   C +  + E+  IL+ M   G  P+ VT + LI+G+C EG ++ A 
Sbjct: 350 CEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAAL 409

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +++  + +     +   Y+ L+    + K + +A  L SKML S + P  +  + +I   
Sbjct: 410 EILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQ 469

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           C  G     + L + +++ G +   D   +SV +  LC+     EA  L   + +K I
Sbjct: 470 CKAGHFDSAYKLLDLLKENGLVP--DQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGI 525



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 4/166 (2%)

Query: 114 IDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I ++E    E C+  S     +I+ +C++ ++  E + ++  M +  ++P    Y  +I 
Sbjct: 549 ISLLERMHSEDCLPNSSTYNSLIYGVCKEGKV-QEGLSMVENMSKMGVKPTVATYTILIE 607

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
               +GD   A+ +   M      PD+ TY + I  +C +G +++A G+   M   G   
Sbjct: 608 EMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMP 667

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
           + + Y+ L+    RLG    A  +L  M   G  C P+   + ++I
Sbjct: 668 DSLTYTLLISAYERLGLAYDAFNVLKRMLDAG--CDPSHPIWNNLI 711


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 163/324 (50%), Gaps = 4/324 (1%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           ++ GC   V    +I +   K RL N+A   L +M +  + PD + Y  ++   C  G +
Sbjct: 295 EQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQL 354

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L K M      PD++ Y ++I   C    + DA      M   G   N V YS +
Sbjct: 355 NEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTI 414

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           L G C LG ++ A +L  EM   G +  PN +T++ ++   C +GM+ EA  + + M   
Sbjct: 415 LHGFCNLGQLDEATQLFKEMV--GRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEK 472

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN  T + L+ G+C+   ++EA ++ + +V  G       Y+ L+     ++R+ +A
Sbjct: 473 GVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKA 532

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           + L ++M    + P+ +  + +++ LC  G++L+   L++ +   G L ++ +  +S+LL
Sbjct: 533 KALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMT--YSILL 590

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
            GLC+  H  EA KL + M +K++
Sbjct: 591 NGLCKHGHLDEALKLFKSMKEKKL 614



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 189/385 (49%), Gaps = 13/385 (3%)

Query: 63  IEVLHRCFPSQSQMGIRFFIWA-----ALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVV 117
           + +L  C    + +     +W       +Q      + + N  C   +IK    +  ++V
Sbjct: 131 LNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMV 190

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
            +  E   V+S   +  I  LC      N A+ V +KM +   +P+ + YN +I   C+ 
Sbjct: 191 RSGHEPD-VISYNTL--INGLCNSGN-TNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKD 246

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
             +  A + +  M    + PD ITY S++ G C  G+L +A  LFK M+++GC  ++V Y
Sbjct: 247 RLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTY 306

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + ++D + +   +  A + L EM  +G    P+VVTYT+++   C  G + EA+ +  +M
Sbjct: 307 NIIIDSLYKDRLVNDAADFLSEMVDQG--IPPDVVTYTTILHGLCYLGQLNEAIRLFKKM 364

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           E  GC P+ V  +T+I   C +  +++A + + ++V  G   +   YS+++       +L
Sbjct: 365 EQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQL 424

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
            EA +LF +M+   V P+ L  S+++  LC  G V E   ++E + + G   ++ +  ++
Sbjct: 425 DEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYT--YN 482

Query: 418 VLLLGLCRKNHSVEAAKLARFMLKK 442
            L+ G C +    EA K+   M+ K
Sbjct: 483 ALMNGYCLRCKMNEARKVFEIMVGK 507



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 164/324 (50%), Gaps = 4/324 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I + +  +++GC   V     I +   K RL N+AM  L +M +  + P+ + Y+ ++  
Sbjct: 358 IRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHG 417

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC  G +  A +L K M   ++ P+ +T+  ++ G C  G + +A  +F+ M   G   N
Sbjct: 418 FCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPN 477

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+AL++G C    M  A ++   M  +G  C+P++ +Y  +I  +C    M +A  +
Sbjct: 478 IYTYNALMNGYCLRCKMNEARKVFEIMVGKG--CAPDLHSYNILINGYCNSRRMDKAKAL 535

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L +M      PN VT +T++KG C  G L +A +L  K+ + G + +   YS L+  L +
Sbjct: 536 LTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCK 595

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
              L EA KLF  M    ++PD +  +++I  + +GG++     L+  +   G       
Sbjct: 596 HGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPP--G 653

Query: 414 DIHSVLLLGLCRKNHSVEAAKLAR 437
             ++V++ GL ++  S EA +L R
Sbjct: 654 RTYNVMIKGLLKEGLSDEAYELFR 677



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 169/360 (46%), Gaps = 32/360 (8%)

Query: 85  ALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL 144
           AL S YR           M+R+   PSI    VE  K  G +  +K    +  LC +  L
Sbjct: 77  ALASFYR-----------MARMNPRPSI----VEFGKFLGSIAKMKQYSTVVYLCNQMDL 121

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
                        F +       N +I   C    +  A  +   M  + + PD+IT+ +
Sbjct: 122 -------------FGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTT 168

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G CN G+++ A  L+  M R G   ++++Y+ L++G+C  G+   A+ +  +ME+ G
Sbjct: 169 LINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNG 228

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
             C PNVVTY ++I   C   ++ +A+  L  M   G  P+ +T ++++ G C  G L+E
Sbjct: 229 --CKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNE 286

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A +L  ++   G       Y+ ++  L + + + +A    S+M+  G+ PD +  + ++ 
Sbjct: 287 ATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILH 346

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            LC  GQ+ E   L++ +E+ G     D   ++ ++  LC+     +A +    M+ + I
Sbjct: 347 GLCYLGQLNEAIRLFKKMEQKG--CKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGI 404



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 9/232 (3%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD---ELMKGMGLID 194
           LC++  + +EA WV   M E  + P+   YN ++  +C +  M  A    E+M G G   
Sbjct: 453 LCQEG-MVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCA- 510

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             PD+ +Y  +I G+CN+ R++ A  L   M       N V Y+ ++ G+C +G +  A 
Sbjct: 511 --PDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQ 568

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           EL  +M   G    P ++TY+ ++   C  G + EAL +   M+     P+ +  + LI+
Sbjct: 569 ELFKKMCSSG--MLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIE 626

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           G  + G L+ A  L  K+ A G    G  Y+ ++  L++     EA +LF K
Sbjct: 627 GMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRK 678



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 16/204 (7%)

Query: 90  YRHSSFM--YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
           Y +++ M  Y   C+M+  ++       V E    +GC   +    ++ N    +R  ++
Sbjct: 479 YTYNALMNGYCLRCKMNEARK-------VFEIMVGKGCAPDLHSYNILINGYCNSRRMDK 531

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  +L +M    L P+T+ YN +++  C  G ++ A EL K M    + P ++TY  ++ 
Sbjct: 532 AKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLN 591

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G L++A  LFK MK      +++ Y+ L++G+   G +E A  L  ++  +G   
Sbjct: 592 GLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADG--I 649

Query: 268 SPNVVTYTSVIQIFCGKGMMKEAL 291
            P   TY  +I     KG++KE L
Sbjct: 650 QPPGRTYNVMI-----KGLLKEGL 668



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 113 IIDVVEAYKE---EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           ++D  E +K+    G + ++    ++ N LC+   L +EA+ + + M E  L PD I+Y 
Sbjct: 564 LLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHL-DEALKLFKSMKEKKLEPDIILYT 622

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
            +I      G +  A  L   +    + P   TY  MIKG    G  ++A  LF+  K
Sbjct: 623 ILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWK 680


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 174/337 (51%), Gaps = 20/337 (5%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F++N+A E           + +V+   + GC   +     + N LC++  + + A+ 
Sbjct: 193 HGLFLHNKASEA----------VALVDQMVQRGCQPDLVTYGAVVNGLCKRGDI-DLALS 241

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L+KM +  +  D +IYN +I   C+   +  A  L   M    + PD+ TY S+I   C
Sbjct: 242 LLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLC 301

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N GR  DA  L   M       N+V +SAL+D   + G +  A +L  EM K   D  P+
Sbjct: 302 NYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PD 359

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY+S+I  FC    + EA  + + M +  C PN VT +TLIKGFC    ++E  +L  
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 419

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V +   Y++L+  L +      A+K+F KM++ GV PD +  S+++  LC  G
Sbjct: 420 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 479

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCR 425
           ++ +   ++E ++K    S ++ DI++  +++ G+C+
Sbjct: 480 KLEKALVVFEYLQK----SKMEPDIYTYNIMIEGMCK 512



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 174/372 (46%), Gaps = 38/372 (10%)

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQM---GIR--FFIWAALQSSYRHSSFMYNRA 100
           IE  +      +D  C  + +   F   ++M   GIR   F + +L S   +    Y R 
Sbjct: 251 IEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCN----YGRW 306

Query: 101 CEMSRI-------KQNPSIII--DVVEAYKEEGCVVSVK-----MMK------------V 134
            + SR+       K NP+++    +++A+ +EG +V  +     M+K            +
Sbjct: 307 SDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I   C   RL +EA  +   M   D  P+ + YN +I+ FC+   +    EL + M    
Sbjct: 367 INGFCMHDRL-DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 425

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           L  + +TY ++I+G   AG  + A  +FK M   G   +++ YS LLDG+C+ G +E+AL
Sbjct: 426 LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL 485

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            +   ++K      P++ TY  +I+  C  G +++   +   +   G  PN +  +T+I 
Sbjct: 486 VVFEYLQK--SKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 543

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           GFC +G  +EA  L  ++   G++   GCY++L+   +R      + +L  +M + G   
Sbjct: 544 GFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVG 603

Query: 375 DGLACSVMIREL 386
           D    S++I  L
Sbjct: 604 DASTISMVINML 615



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 122/247 (49%), Gaps = 4/247 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ +Y  +I  FC   +L  A  +   M + G   ++V  S+LL+G C    +  A+ L+
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 173

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M + G    P+ VT+ ++I          EA+ ++D+M   GC P+ VT   ++ G C
Sbjct: 174 DQMVEMG--YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLC 231

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G++D A  L+ K+  G   +    Y++++  L + K + +A  LF+KM   G++PD  
Sbjct: 232 KRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVF 291

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I  LC  G+  +   L  ++ +     +V +   S L+    ++   VEA KL  
Sbjct: 292 TYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVT--FSALIDAFVKEGKLVEAEKLYD 349

Query: 438 FMLKKRI 444
            M+K+ I
Sbjct: 350 EMIKRSI 356



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L+DA GLF  M +     ++V ++ LL  I ++   +  + L   M+      S ++ +
Sbjct: 60  KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNL--RISYDLYS 117

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y  +I  FC +  +  AL +L +M  LG  P+ VT+S+L+ G+C    + +A  L+D++V
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV 177

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G       +++L+  L    +  EA  L  +M+  G +PD +    ++  LC  G + 
Sbjct: 178 EMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDID 237

Query: 394 EGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
               L + +EK      +++D  I++ ++ GLC+  H  +A  L   M  K I
Sbjct: 238 LALSLLKKMEK----GKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGI 286


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 169/330 (51%), Gaps = 9/330 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I V+E     GC  +  +  ++ N +C++ R+ ++A   L  M  +   PDTI Y  V++
Sbjct: 305 IQVLEQMSGHGCAANTTLCNIVINTICKQGRV-DDAFQFLNNMGSYGCSPDTISYTTVLK 363

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C       A EL+K M   +  P+ +T+ + I   C  G +E A  L + M  HGC  
Sbjct: 364 GLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEV 423

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N+V Y+AL++G C  G ++ ALEL   M      C PN +TYT+++   C    +  A  
Sbjct: 424 NIVTYNALVNGFCVQGRVDSALELFYSMP-----CKPNTITYTTLLTGLCNAERLDAAAE 478

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L  M    CAPN VT + L+  FC +G +DEA +L+++++  G   +   Y++L+  + 
Sbjct: 479 LLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGIT 538

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +    +EA +L   ++++GV PD +  S +I  L    +V E   ++  ++ +G      
Sbjct: 539 KDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPK-- 596

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           + I++ +LL LC++ ++  A     +M+  
Sbjct: 597 AVIYNKILLALCKRCNTDGAIDFFAYMVSN 626



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 159/310 (51%), Gaps = 8/310 (2%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           K+I NLC + R  ++A  VLR         D   YN ++  +C  G + AA  L+  M +
Sbjct: 83  KLIRNLCRRGR-TSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPV 141

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               PD  TY  +I+G C+ GR+ +A  L   M   GC  ++V Y+ LL+ +C+     +
Sbjct: 142 A---PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQ 198

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+E+L EM  +G  C+PN+VTY  +I   C +G + +A   L+R+ + G  P+ V+ +T+
Sbjct: 199 AMEVLDEMRAKG--CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTV 256

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +KG C     ++  +L  +++    + +   +  LV    R   ++ A ++  +M   G 
Sbjct: 257 LKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGC 316

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
             +   C+++I  +C  G+V + F    ++   G   S D+  ++ +L GLCR     +A
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYG--CSPDTISYTTVLKGLCRAERWEDA 374

Query: 433 AKLARFMLKK 442
            +L + M++K
Sbjct: 375 KELLKEMVRK 384



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 163/342 (47%), Gaps = 11/342 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+ +  S++ D++      GC  SV    V+     K+    +AM VL +M     
Sbjct: 156 CDRGRVGEALSLLDDMLH----RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGC 211

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + YN +I   C +G +  A E +  +      PD ++Y +++KG C A R ED   
Sbjct: 212 TPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEE 271

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M    C  N V +  L+   CR G +ERA+++L +M   G  C+ N      VI  
Sbjct: 272 LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG--CAANTTLCNIVINT 329

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G + +A   L+ M + GC+P+ ++ +T++KG C     ++A +L+ ++V      +
Sbjct: 330 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 389

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              +++ +  L +   +++A  L  +M   G + + +  + ++   C+ G+V     L+ 
Sbjct: 390 EVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFY 449

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +         ++  ++ LL GLC       AA+L   ML+K
Sbjct: 450 SMP-----CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK 486



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 152/302 (50%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ R+  EA+ +L  M     +P  + Y  ++   C+      A E++  M   
Sbjct: 151 IIRGLCDRGRVG-EALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAK 209

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+I+TY  +I G C  GR++DA      +  +G   + V+Y+ +L G+C     E  
Sbjct: 210 GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 269

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL  EM ++  +C PN VT+  +++ FC  GM++ A+ +L++M   GCA N    + +I
Sbjct: 270 EELFAEMMEK--NCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVI 327

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C +G +D+A+Q ++ + + G       Y++++  L R +R ++A++L  +M+     
Sbjct: 328 NTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP 387

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  +  I  LC  G + +   L E + + G    V+   ++ L+ G C +     A 
Sbjct: 388 PNEVTFNTFICILCQKGLIEQATMLIEQMSEHG--CEVNIVTYNALVNGFCVQGRVDSAL 445

Query: 434 KL 435
           +L
Sbjct: 446 EL 447



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 131/258 (50%), Gaps = 7/258 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++E   E GC V++     + N  C + R+ + A+ +   MP    +P+TI Y  ++   
Sbjct: 412 LIEQMSEHGCEVNIVTYNALVNGFCVQGRV-DSALELFYSMP---CKPNTITYTTLLTGL 467

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C    + AA EL+  M   D  P+++T+  ++  FC  G +++A  L + M  HGC  NL
Sbjct: 468 CNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNL 527

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + Y+ LLDGI +  + E ALELL  +   G   SP++VTY+S+I +   +  ++EA+ + 
Sbjct: 528 ITYNTLLDGITKDCNSEEALELLHGLVSNG--VSPDIVTYSSIIGVLSREDRVEEAIKMF 585

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             ++ LG  P  V  + ++   C   N D A      +V+ G + +   Y +L+  L   
Sbjct: 586 HIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANE 645

Query: 355 KRLKEAEKLFSKMLASGV 372
             LKE   L  ++ + GV
Sbjct: 646 DFLKETRDLLRELCSRGV 663



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 133/259 (51%), Gaps = 11/259 (4%)

Query: 133 KVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V FN     LC+K  L  +A  ++ +M E     + + YN ++  FC +G + +A EL 
Sbjct: 390 EVTFNTFICILCQKG-LIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELF 448

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M      P+ ITY +++ G CNA RL+ A  L   M +  CA N+V ++ L+   C+ 
Sbjct: 449 YSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQK 505

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G M+ A+EL+ +M + G  C+PN++TY +++         +EAL +L  + + G +P+ V
Sbjct: 506 GLMDEAIELVEQMMEHG--CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIV 563

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S++I     E  ++EA ++   V   G       Y+ +++ L +      A   F+ M
Sbjct: 564 TYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYM 623

Query: 368 LASGVKPDGLACSVMIREL 386
           +++G  P+ L    +I  L
Sbjct: 624 VSNGCMPNELTYITLIEGL 642



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +P+V   T +I+  C +G   +A  +L   E  G A +    +TL+ G+C  G LD A +
Sbjct: 75  APDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARR 134

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           LI  +       +   Y+ ++  L    R+ EA  L   ML  G +P  +  +V++  +C
Sbjct: 135 LIASMPVAPDAYT---YTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVC 191

Query: 388 LG---GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
                GQ +E   + +++   G   ++ +  ++V++ G+CR+    +A
Sbjct: 192 KSTGFGQAME---VLDEMRAKGCTPNIVT--YNVIINGMCREGRVDDA 234



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + EA  ++DR  + G AP+    + LI+  C  G   +A +++      G+      Y++
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           LV    R  +L  A +L + M    V PD    + +IR LC  G+V E   L +D+   G
Sbjct: 119 LVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 407 FLSSVDSDIHSVLLLGLCR 425
              SV +  ++VLL  +C+
Sbjct: 176 CQPSVVT--YTVLLEAVCK 192



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
           S SS    ++ +  L+    L EA +L  +  + G  PD   C+ +IR LC  G+  +  
Sbjct: 39  SASSPNPANARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAA 98

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +    E+ G  ++VD   ++ L+ G CR      A +L
Sbjct: 99  RVLRAAERSG--TAVDVFAYNTLVAGYCRYGQLDAARRL 135


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 179/342 (52%), Gaps = 8/342 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  ++K+     ++V++   +  C   V    ++     K     +AM +L +M +   
Sbjct: 223 CDSGKLKE----AMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGC 278

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD + YN +I   C++G +  A   +  M      P++IT+  +++  C+ GR  DA  
Sbjct: 279 KPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEK 338

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
               M R GC+ ++V ++ L++ +CR G + RA+++L +M + G  C+PN ++Y  ++  
Sbjct: 339 FLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHG--CTPNSLSYNPLLHA 396

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C    M+ A+  LD M + GC P+ VT +TL+   C +G +D A ++++++ + G    
Sbjct: 397 LCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPV 456

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++++  L +  +  +A KL  +M   G+KPD +  S ++  L   G+V E    + 
Sbjct: 457 LITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFH 516

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           D+E++G     ++  ++ ++LGLC+   +V A     +M+ +
Sbjct: 517 DLEEMGV--KPNAITYNSIMLGLCKARQTVRAIDFLAYMVAR 556



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 179/359 (49%), Gaps = 19/359 (5%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + +++  +++GC   V    V+ N +C++ RL +EA+  L  MP +  +P+ I +N ++R
Sbjct: 267 MKLLDEMRDKGCKPDVVTYNVLINGICKEGRL-DEAIRFLNHMPSYGCQPNVITHNIILR 325

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G  + A++ +  M      P ++T+  +I   C  G +  A  + + M +HGC  
Sbjct: 326 SMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTP 385

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N ++Y+ LL  +C+   MERA+E L  M   G  C P++VTY +++   C  G +  A+ 
Sbjct: 386 NSLSYNPLLHALCKDKKMERAIEYLDIMVSRG--CYPDIVTYNTLLTALCKDGKVDVAVE 443

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           IL+++ + GC+P  +T +T+I G    G  D+A +L+D++   G       YS+LV  L 
Sbjct: 444 ILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLS 503

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           R  ++ EA   F  +   GVKP+ +  + ++  LC   Q +        +   G   +  
Sbjct: 504 REGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTET 563

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471
           S  + +L+ GL  +  + EA +L   +  + +             +KKS  E+++  +P
Sbjct: 564 S--YMILIEGLAYEGLAKEALELLNELCSRGV-------------VKKSSAEQVVVKIP 607



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 147/282 (52%), Gaps = 9/282 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD I   ++IR  C+ G    A  +M+ +      PD+ITY  +I G+C  G +  A   
Sbjct: 143 PDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSA--- 199

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG-EMEKEGGDCSPNVVTYTSVIQI 280
            +++ R   + ++V Y+ +L  +C  G ++ A+E+L  +M++E   C P+V+TYT +I+ 
Sbjct: 200 LQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRE---CYPDVITYTILIEA 256

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +  + +A+ +LD M   GC P+ VT + LI G C EG LDEA + ++ + + G   +
Sbjct: 257 TCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPN 316

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ ++  +  T R  +AEK  ++M+  G  P  +  +++I  LC  G +     + E
Sbjct: 317 VITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLE 376

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            + + G   + +S  ++ LL  LC+      A +    M+ +
Sbjct: 377 KMPQHG--CTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSR 416



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 136/259 (52%), Gaps = 7/259 (2%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           NN +R     G++    + ++ M      PDII   S+I+G C  G+   A  + ++++ 
Sbjct: 114 NNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILED 173

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   +++ Y+ L+ G C+ G +  AL+LL  M       SP+VVTY ++++  C  G +
Sbjct: 174 SGAVPDVITYNVLISGYCKTGEIGSALQLLDRMS-----VSPDVVTYNTILRTLCDSGKL 228

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           KEA+ +LDR     C P+ +T + LI+  C E  + +A +L+D++   G       Y+ L
Sbjct: 229 KEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVL 288

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  + +  RL EA +  + M + G +P+ +  ++++R +C  G+ ++      ++ + G 
Sbjct: 289 INGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGC 348

Query: 408 LSSVDSDIHSVLLLGLCRK 426
             SV +   ++L+  LCRK
Sbjct: 349 SPSVVT--FNILINFLCRK 365


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 151/282 (53%), Gaps = 5/282 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           RP    YN +I   C++GD+ AA  L + M    L PD +TY SMI GF   GRL+D   
Sbjct: 127 RPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVC 186

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F+ MK   C  +++ Y+AL++  C+ G +   LE   EM+  G    PNVV+Y++++  
Sbjct: 187 FFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNG--LKPNVVSYSTLVDA 244

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +GMM++A+     M  +G  PN  T ++LI   C  GNL +A++L ++++  G   +
Sbjct: 245 FCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWN 304

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+  L   +R+KEAE+LF KM  +GV P+  + + +I        +     L  
Sbjct: 305 VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLN 364

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +++  G     D  ++   + GLC     +EAAK+    +K+
Sbjct: 365 ELKGRGI--KPDLLLYGTFIWGLCSL-EKIEAAKVVMNEMKE 403



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 166/362 (45%), Gaps = 4/362 (1%)

Query: 65  VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEG 124
           +LHR         ++ F    + +  R + F YN   +    + +      + E  K  G
Sbjct: 101 LLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG 160

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
            V        + +   K    ++ +    +M +    PD I YN +I  FC+ G +    
Sbjct: 161 LVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGL 220

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           E  + M    L P++++Y +++  FC  G ++ A   +  M+R G   N   Y++L+D  
Sbjct: 221 EFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 280

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C++G++  A  L  EM + G     NVVTYT++I   C    MKEA  +  +M+  G  P
Sbjct: 281 CKIGNLSDAFRLGNEMLQVG--VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIP 338

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N  + + LI GF    N+D A +L++++   G       Y + +  L   ++++ A+ + 
Sbjct: 339 NLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVM 398

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           ++M   G+K + L  + ++      G   EG  L ++++++    +V +    VL+ GLC
Sbjct: 399 NEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVT--FCVLIDGLC 456

Query: 425 RK 426
           + 
Sbjct: 457 KN 458



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 138/290 (47%), Gaps = 3/290 (1%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           R+M    L+P+ + Y+ ++  FC++G M  A +    M  + L P+  TY S+I   C  
Sbjct: 224 REMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKI 283

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G L DA  L   M + G   N+V Y+AL+DG+C    M+ A EL G+M+  G    PN+ 
Sbjct: 284 GNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG--VIPNLA 341

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           +Y ++I  F     M  AL +L+ ++  G  P+ +   T I G C    ++ A  +++++
Sbjct: 342 SYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEM 401

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
              G  ++   Y++L+    ++    E   L  +M    ++   +   V+I  LC    V
Sbjct: 402 KECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLV 461

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +    +  I    F    ++ I + ++ GLC+ N    A  L   M++K
Sbjct: 462 SKAVDYFNRISN-DFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK 510



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 167/381 (43%), Gaps = 26/381 (6%)

Query: 32  AERFYTHLQKN---PNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQS 88
           A +FY  +++    PN       T  + +D+ C I  L   F   ++M     +   ++ 
Sbjct: 254 AIKFYVDMRRVGLVPNEY-----TYTSLIDANCKIGNLSDAFRLGNEM-----LQVGVEW 303

Query: 89  SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
           +    + + +  C+  R+K+   +   +  A    G + ++     + +   KA+  + A
Sbjct: 304 NVVTYTALIDGLCDAERMKEAEELFGKMDTA----GVIPNLASYNALIHGFVKAKNMDRA 359

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
           + +L ++    ++PD ++Y   I   C    + AA  +M  M    +  + + Y +++  
Sbjct: 360 LELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDA 419

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           +  +G   +   L   MK       +V +  L+DG+C+   + +A++    +  + G   
Sbjct: 420 YFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFG-LQ 478

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
            N   +T++I   C    ++ A  + ++M   G  P+R   ++L+ G   +GN+ EA  L
Sbjct: 479 ANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALAL 538

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC-SVMIRELC 387
            DK+   G       Y+SLV  L    +L++A     +M+  G+ PD + C SV+ +   
Sbjct: 539 RDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYE 598

Query: 388 LGGQVLEGFCLYEDIEKIGFL 408
           LG       C+ E +E   +L
Sbjct: 599 LG-------CIDEAVELQSYL 612


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 189/376 (50%), Gaps = 9/376 (2%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
           Y  S FM N  C++ R+    S++  V++   +   V       +I  LC+    A +A+
Sbjct: 129 YTLSIFM-NCFCQLQRVDLGFSVLAKVIKLGLQPTIVT---FTTLINGLCKVGEFA-QAV 183

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            +   M     +PD   YN +I   C+ G+  AA  L+K M      P+++TY ++I   
Sbjct: 184 ELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSL 243

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C    + +A  +F  MK  G + ++  Y++L+ G+C+    + A  LL EM     +  P
Sbjct: 244 CRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSL--NIMP 301

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           ++VT+  ++  FC +G + EALG+L  M  +G  PN VT S+L+ G+ +  ++ EA +L 
Sbjct: 302 DIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLF 361

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
             ++  G   +   Y+ L+    + KR+ EA +LF++M+  G+ P+ ++ + +I   C  
Sbjct: 362 HVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQL 421

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449
           G++ E   L+ ++   G L   D   +S+LL G C++ +  +A +L R M    +     
Sbjct: 422 GKLREAQDLFRNMCTNGNLP--DLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLV 479

Query: 450 YVDKIVEHLKKSGDEE 465
               +V  + KSG+ +
Sbjct: 480 MYTILVHAMCKSGNHK 495



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 131/257 (50%), Gaps = 4/257 (1%)

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L K M L+ L P+I T    +  FC   R++    +   + + G    +V ++ L++G+C
Sbjct: 115 LSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLC 174

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           ++G   +A+EL  +M  +G  C P+V TY ++I   C  G    A G+L +ME  GC PN
Sbjct: 175 KVGEFAQAVELFDDMVAKG--CQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPN 232

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            VT STLI   C +  ++EA  +   + A G       Y+SL+  L +  R KEA  L +
Sbjct: 233 MVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLN 292

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +M +  + PD +  +V++   C  G+V E   + + + ++G   +V +  +S L+ G   
Sbjct: 293 EMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVT--YSSLMYGYSL 350

Query: 426 KNHSVEAAKLARFMLKK 442
               VEA KL   M+ K
Sbjct: 351 WTDVVEARKLFHVMITK 367



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 155/311 (49%), Gaps = 6/311 (1%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+ SR K+  S +++ + +      +V+  ++   F  C++ +++ EA+ VL+ M E  +
Sbjct: 279 CKFSRWKE-ASALLNEMTSLNIMPDIVTFNVLVDTF--CKEGKVS-EALGVLKTMTEMGV 334

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + Y++++  +    D++ A +L   M      P+I +Y  +I G+C A R+++A  
Sbjct: 335 EPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQ 394

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M   G   N V+Y+ L+ G C+LG +  A +L   M   G    P++ TY+ ++  
Sbjct: 395 LFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGN--LPDLFTYSILLDG 452

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +G + +A  +   M++    PN V  + L+   C  GN  +A +L  ++   G    
Sbjct: 453 FCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPH 512

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++++  L +   L EA + F  M A G  PD ++ +V+IR L           L  
Sbjct: 513 VQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVG 572

Query: 401 DIEKIGFLSSV 411
           ++   GF++ V
Sbjct: 573 EMRDRGFIADV 583



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 5/233 (2%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P+   YN +I  +C+   +  A +L   M    L P+ ++Y ++I GFC  G+L +A  
Sbjct: 370 KPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQD 429

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF+ M  +G   +L  YS LLDG C+ G + +A  L   M+       PN+V YT ++  
Sbjct: 430 LFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTY--LKPNLVMYTILVHA 487

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G  K+A  +   +   G  P+    +T+I G C EG LDEA +    + A G    
Sbjct: 488 MCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPD 547

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
              Y+ ++  L++ K    A  L  +M   G   D   C   + E+C G +V+
Sbjct: 548 EISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADVRPC---LSEVCQGKKVM 597


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 162/307 (52%), Gaps = 5/307 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC +AR A  A+ +L +M   D+ PD   +  ++  F E+G + AA  L  
Sbjct: 197 VTFNTVIDALC-RARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKA 255

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M  +   P  +T   +I G+C  GR+ DA G  +     G   + V +S  ++G+C+ G
Sbjct: 256 RMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNG 315

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ AL++LG M +EG  C P+V TY++VI   C  G ++EA GI+++M   GC P+  T
Sbjct: 316 HVDHALKVLGLMLQEG--CEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTT 373

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI   C E  L+EA  L  ++   G   +   ++ L+  L +      A +LF +M 
Sbjct: 374 FNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMK 433

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           +SG  PD +  +++I  LC  G++ +   L +++E  G   S  +  ++ ++ GLC++  
Sbjct: 434 SSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVT--YNTIIDGLCKRRR 491

Query: 429 SVEAAKL 435
             EA ++
Sbjct: 492 IEEAEEV 498



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 164/348 (47%), Gaps = 41/348 (11%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +EGC   V     + N LC    L  EA  ++ +M +    PDT  +N +I   C +  +
Sbjct: 329 QEGCEPDVYTYSTVINCLCNNGEL-EEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQL 387

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A +L + + +  L P++ T+  +I   C  G    A  LF+ MK  GC  + V Y+ L
Sbjct: 388 EEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNIL 447

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +D +C  G + +AL+LL EME  G  C  + VTY ++I   C +  ++EA  + D+M+  
Sbjct: 448 IDNLCSSGKLAKALDLLKEMEVSG--CPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVT 505

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG------------------------ 336
           G   N +T +TLI G C    +D+A +L+D++++ G                        
Sbjct: 506 GIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKA 565

Query: 337 -----SVSSGG------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
                ++++ G       Y++L+  L + +R + A KL   M   G+KP   A + +I+ 
Sbjct: 566 ADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQS 625

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           L  G    +   L+ ++ ++G     D+  + ++  GLCR    ++ A
Sbjct: 626 LFRGNNGRDALSLFREMTEVG--GPPDAFTYKIVFRGLCRGGGPIKEA 671



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 171/351 (48%), Gaps = 9/351 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V     +  LC+   + + A+ VL  M +    PD   Y+ VI   C  G++  A  ++ 
Sbjct: 302 VTFSTFVNGLCQNGHV-DHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVN 360

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      PD  T+ ++I   C   +LE+A  L + +   G + N+  ++ L++ +C++G
Sbjct: 361 QMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVG 420

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A+ L  EM+  G  C+P+ VTY  +I   C  G + +AL +L  ME  GC  + VT
Sbjct: 421 DPHLAVRLFEEMKSSG--CTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVT 478

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +T+I G C    ++EA ++ D++   G   +   +++L+  L   +R+ +A +L  +M+
Sbjct: 479 YNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMI 538

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           + G++P+ +  + ++   C  G + +   + + +   GF   VD   ++ L+ GLC+   
Sbjct: 539 SEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGF--EVDVVTYATLINGLCKARR 596

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE----LITNLPKIGG 475
           +  A KL R M  K +       + +++ L +  +      L   + ++GG
Sbjct: 597 TQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGG 647



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 3/301 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+      +G   +V    ++ N   K    + A+ +  +M      PD + YN +I  
Sbjct: 391 LDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDN 450

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G +  A +L+K M +       +TY ++I G C   R+E+A  +F  M   G   N
Sbjct: 451 LCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRN 510

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            + ++ L+DG+C    ++ A EL+ +M  EG    PN VTY S++  +C +G + +A  I
Sbjct: 511 AITFNTLIDGLCNAERIDDAAELVDQMISEG--LQPNNVTYNSILTHYCKQGNISKAADI 568

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L  M A G   + VT +TLI G C       A +L+  +   G   +   Y+ ++  L R
Sbjct: 569 LQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFR 628

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIGFLSSVD 412
               ++A  LF +M   G  PD     ++ R LC  GG + E F    ++   GF+    
Sbjct: 629 GNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFS 688

Query: 413 S 413
           S
Sbjct: 689 S 689



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 152/311 (48%), Gaps = 5/311 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM-WVLRKMPEFDLRPDTIIYNNVIRLF 174
           +V   + EG  V + +++       + +L ++A   V  ++  F ++ +T +YN+++ + 
Sbjct: 112 LVGEMRREGHEVGLGLVQSFIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVL 171

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            E   +   +     M    + PD++T+ ++I   C A +   A  + + M     A + 
Sbjct: 172 AEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDE 231

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             ++ L++G    GS+E AL L   M + G  CSP  VT   +I  +C  G + +ALG +
Sbjct: 232 TTFTTLMEGFVEEGSIEAALRLKARMSEMG--CSPTSVTVNVLINGYCKLGRVGDALGYI 289

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
            +  A G  P+RVT ST + G C  G++D A +++  ++  G       YS+++  L   
Sbjct: 290 QQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNN 349

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
             L+EA+ + ++M+ SG  PD    + +I  LC   Q+ E   L  ++   G   +V + 
Sbjct: 350 GELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYT- 408

Query: 415 IHSVLLLGLCR 425
             ++L+  LC+
Sbjct: 409 -FNILINALCK 418



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 141/361 (39%), Gaps = 68/361 (18%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMK-------------GMGLIDLYPDIITYVSMI 206
           L P   +Y  +IR     G    A +LMK             G+GL+          S I
Sbjct: 86  LTPSRDVYEEIIRKLGTAG----AFDLMKVLVGEMRREGHEVGLGLVQ---------SFI 132

Query: 207 KGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSALLDGICRLGSMERALE-LLGEMEKEG 264
             +      +DA  L    +   G  AN   Y+ LL  +   GS  + LE    EM  +G
Sbjct: 133 GSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAE-GSKIKLLESAYTEMSSQG 191

Query: 265 GDCSPNVVTYTSVIQIFC-----------------------------------GKGMMKE 289
               P+VVT+ +VI   C                                    +G ++ 
Sbjct: 192 --IEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEA 249

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           AL +  RM  +GC+P  VT++ LI G+C  G + +A   I + +A G       +S+ V 
Sbjct: 250 ALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVN 309

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L +   +  A K+   ML  G +PD    S +I  LC  G++ E   +   +   G L 
Sbjct: 310 GLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLP 369

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469
             D+   + L++ LC +N   EA  LAR +  K +       + ++  L K GD  L   
Sbjct: 370 --DTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVR 427

Query: 470 L 470
           L
Sbjct: 428 L 428



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 4/155 (2%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N S   D+++     G  V V     + N   KAR    A+ +LR M    ++P    YN
Sbjct: 561 NISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYN 620

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC-NAGRLEDACGLFKVMKR 227
            VI+      +   A  L + M  +   PD  TY  + +G C   G +++A      M  
Sbjct: 621 PVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMAD 680

Query: 228 HGCAANLVAYSALLDGICRLGSME---RALELLGE 259
           +G      ++  L +G+  LG  +   RA+EL+ E
Sbjct: 681 NGFIPEFSSFRMLAEGLLNLGMDDYLIRAIELIVE 715


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 171/325 (52%), Gaps = 4/325 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++     GCV  V    ++     K     +A+ +L +M +    PD + YN V+   C
Sbjct: 174 VLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGIC 233

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G +  A E +K +      P+ ++Y  ++KG C A R EDA  L   M R G   N+V
Sbjct: 234 QEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVV 293

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L+  +CR G +E A+E+L ++ K G  C+PN ++Y  ++  FC +  M  A+  ++
Sbjct: 294 TFNMLISFLCRRGLVEPAMEILDQIPKYG--CTPNSLSYNPILHAFCKQKKMDRAMAFVE 351

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M + GC P+ V+ +TL+   C  G +D A +L+ ++   G       Y++++  L +  
Sbjct: 352 LMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAG 411

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           + +EA +L ++M+  G++PD +  S +   LC  G++ E    +  ++ +G     ++ +
Sbjct: 412 KTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRP--NTVL 469

Query: 416 HSVLLLGLCRKNHSVEAAKLARFML 440
           ++ +LLGLC++  +  A  L  +M+
Sbjct: 470 YNAILLGLCKRRATHSAIDLFTYMV 494



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 155/295 (52%), Gaps = 8/295 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           + +    C+ S  KQ     + +++  +++GC   +    V+ N +C++ R+ ++AM  L
Sbjct: 191 TILLEATCKRSGYKQ----AVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRV-DDAMEFL 245

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           + +P +   P+T+ YN V++  C       A++LM  M      P+++T+  +I   C  
Sbjct: 246 KSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRR 305

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G +E A  +   + ++GC  N ++Y+ +L   C+   M+RA+  +  M   G  C P++V
Sbjct: 306 GLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSG--CYPDIV 363

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           +Y +++   C  G +  A+ +L +++  GC P  ++ +T+I G    G  +EA +L++++
Sbjct: 364 SYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEM 423

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           V  G       YS++   L R  R++EA K F K+   G++P+ +  + ++  LC
Sbjct: 424 VTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLC 478



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 159/344 (46%), Gaps = 48/344 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   R A EA  VL         PD + YN ++  +C  G +  A  L+  M   
Sbjct: 96  LIKKLCASGRTA-EARRVL-----ASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAM--- 146

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD  TY ++I+G C  GR ++A  +   M R GC  ++V Y+ LL+  C+    ++A
Sbjct: 147 PMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQA 206

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++LL EM  +G  C+P++VTY  V+   C +G + +A+  L  + + GC PN V+ + ++
Sbjct: 207 VKLLDEMRDKG--CAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVL 264

Query: 314 KGFCV-----------------------------------EGNLDEAYQLIDKVVAGGSV 338
           KG C                                     G ++ A +++D++   G  
Sbjct: 265 KGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCT 324

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y+ ++    + K++  A      M++SG  PD ++ + ++  LC GG+V     L
Sbjct: 325 PNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVEL 384

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              ++  G    + S  ++ ++ GL +   + EA +L   M+ K
Sbjct: 385 LHQLKDKGCTPVLIS--YNTVIDGLTKAGKTEEALELLNEMVTK 426



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 133/247 (53%), Gaps = 5/247 (2%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           VV+  M+  I  LC +  L   AM +L ++P++   P+++ YN ++  FC++  M  A  
Sbjct: 292 VVTFNML--ISFLCRRG-LVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 348

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
            ++ M     YPDI++Y +++   C  G ++ A  L   +K  GC   L++Y+ ++DG+ 
Sbjct: 349 FVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLT 408

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G  E ALELL EM  +G    P+++TY+++    C +G ++EA+    +++ +G  PN
Sbjct: 409 KAGKTEEALELLNEMVTKG--LQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPN 466

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  + ++ G C       A  L   +V+ G + +   Y+ L+  L     +KEA ++ +
Sbjct: 467 TVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMA 526

Query: 366 KMLASGV 372
           ++ + GV
Sbjct: 527 ELCSRGV 533



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 2/174 (1%)

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           VE     GC   +     +     +    + A+ +L ++ +    P  I YN VI    +
Sbjct: 350 VELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTK 409

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
            G    A EL+  M    L PDIITY ++  G C  GR+E+A   F  ++  G   N V 
Sbjct: 410 AGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVL 469

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
           Y+A+L G+C+  +   A++L   M   G  C PN  TYT +I+    +G++KEA
Sbjct: 470 YNAILLGLCKRRATHSAIDLFTYMVSNG--CMPNESTYTILIEGLAYEGLVKEA 521



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++++   K++GC   +     + +   KA    EA+ +L +M    L+PD I Y+ +   
Sbjct: 382 VELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSG 441

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C +G +  A +    +  + + P+ + Y +++ G C       A  LF  M  +GC  N
Sbjct: 442 LCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPN 501

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
              Y+ L++G+   G ++ A E++ E+      CS  VV+ T V
Sbjct: 502 ESTYTILIEGLAYEGLVKEAREMMAEL------CSRGVVSKTLV 539


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 178/348 (51%), Gaps = 10/348 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRK 154
           + N  C    IKQ     +++++   E+G  + V     +I  LC+   + +EA+ +L  
Sbjct: 308 LVNGLCRTGHIKQG----LEMMDFMLEKGFELDVYTYNSLISGLCKLGEI-DEAVEILHH 362

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M   D  P+T+ YN +I   C++  + AA EL + +    + PD+ T+ S+I+G C    
Sbjct: 363 MVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSN 422

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            E A  LF+ MK  GC  +   YS L++ +C    ++ AL LL EME  G  C+ NVV Y
Sbjct: 423 REIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSG--CARNVVVY 480

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            ++I   C    + +A  I D+ME LG + + VT +TLI G C    ++EA QL+D+++ 
Sbjct: 481 NTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIM 540

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y++++    +   +K A  +   M  +G +PD +    +I  LC  G+V  
Sbjct: 541 EGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDV 600

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              L   ++  G + +  +  ++ ++  LC++  + EA +L R M++K
Sbjct: 601 ASKLLRSVQMKGMVLTPQA--YNPVIQALCKRKRTKEAMRLFREMMEK 646



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 130/243 (53%), Gaps = 2/243 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM +  +M E    PD   Y+ +I   C +  +  A  L+K M L     +++ Y ++I 
Sbjct: 426 AMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLID 485

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   R+ DA  +F  M+  G + + V Y+ L++G+C+   +E A +L+ +M  EG   
Sbjct: 486 GLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEG--L 543

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+  TYT++++ FC +G +K A  I+  M   GC P+ VT  TLI G C  G +D A +
Sbjct: 544 KPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASK 603

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+  V   G V +   Y+ ++  L + KR KEA +LF +M+  G  PD +   ++ R LC
Sbjct: 604 LLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLC 663

Query: 388 LGG 390
            GG
Sbjct: 664 NGG 666



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 190/424 (44%), Gaps = 50/424 (11%)

Query: 62  VIEVLHRCFPSQSQMGIRFFIWAALQSSYR-HSSFMYN------------------RACE 102
           ++++L R   S S + +  F WA+ Q +Y  H S  +                   R   
Sbjct: 62  LLDLLRRQPDSSSALSL--FQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMH 119

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVS-----VKMMKVIFNLCEKARLANEAMWVLRKMPE 157
            S+I  + S  +  +E Y     + +       +M+  F +    R  N A+ +L K  +
Sbjct: 120 SSKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANK 179

Query: 158 FDL-------------RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
             L              PD   +N +IR  C+   +  A  +++ M    L PD  T+ +
Sbjct: 180 LKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTT 239

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +++GF     +E A  + ++M   GC    V+ + L++G+C+ G +E AL  + E   E 
Sbjct: 240 LMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE---EE 296

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           G C P+ VT+ +++   C  G +K+ L ++D M   G   +  T ++LI G C  G +DE
Sbjct: 297 GFC-PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDE 355

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A +++  +V+     +   Y++L+  L +   ++ A +L   + + GV PD    + +I+
Sbjct: 356 AVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQ 415

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            LCL         L+E++++ G     D   +S+L+  LC +    EA      ML K +
Sbjct: 416 GLCLTSNREIAMELFEEMKEKG--CDPDEFTYSILIESLCSERRLKEA-----LMLLKEM 468

Query: 445 WLQG 448
            L G
Sbjct: 469 ELSG 472



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 6/234 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           SV    +I  LC+  R+  EA  ++ +M    L+PD   Y  +++ FC++GD+  A +++
Sbjct: 512 SVTYNTLINGLCKSKRV-EEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIV 570

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M L    PDI+TY ++I G C AGR++ A  L + ++  G      AY+ ++  +C+ 
Sbjct: 571 QNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKR 630

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC-GKGMMKEALGILDRMEALGCAPNR 306
              + A+ L  EM ++G    P+V+TY  V +  C G G ++EA+     M   G  P  
Sbjct: 631 KRTKEAMRLFREMMEKGD--PPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEF 688

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
            +   L +G C     D   QLI+ V+  G  S     +S++   ++ ++  +A
Sbjct: 689 PSFGFLAEGLCSLSMEDTLIQLINMVMEKGRFSQSE--TSIIRGFLKIQKFNDA 740


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 158/298 (53%), Gaps = 6/298 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           NEAM +L +M    L PD   YN +IR  C++G +  A EL+  +      PD+I+Y  +
Sbjct: 224 NEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNIL 283

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EKEG 264
           ++ F N G+ ++   L   M   GC  N V YS L+  +CR G ++ A+ +L  M EKE 
Sbjct: 284 LRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKE- 342

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
              +P+  +Y  +I   C +G +  A+GI+D M + GC P+ V  +T++   C  GN ++
Sbjct: 343 --LTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQ 400

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A ++ +K+   G   +   Y++++  L        A  +   M++ GV PD +  + +I 
Sbjct: 401 ALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLIS 460

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            LC  G V E   L +D+E+ GF  +V S  ++++LLGLC+     +A  +   M++K
Sbjct: 461 CLCRDGLVEEAIGLLDDMEQSGFRPTVIS--YNIVLLGLCKVRRIDDAIGMFAEMIEK 516



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 160/368 (43%), Gaps = 45/368 (12%)

Query: 84  AALQS-SYRHSSFM--YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140
           A LQS  +R +  M   NR+C+  +  ++   +  +V        ++  K++K  FN  +
Sbjct: 59  AHLQSYDFRETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNF-K 117

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
               A+  M +L    E    PD   YN VI  FC+   + AA +++  M      PDI+
Sbjct: 118 NIEKASRVMEILESHTE----PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIV 173

Query: 201 TYVSMIKGFCN-----------------------------------AGRLEDACGLFKVM 225
           TY  MI   CN                                    G + +A  L + M
Sbjct: 174 TYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEM 233

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
              G   ++  Y+A++ G+C+ G +ERA EL+  +  +G  C P+V++Y  +++ F  +G
Sbjct: 234 LARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKG--CKPDVISYNILLRAFLNQG 291

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
              E   ++  M + GC PN+VT S LI   C  G +DEA  ++  ++          Y 
Sbjct: 292 KWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYD 351

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
            L+  L +  RL  A  +   M+++G  PD +  + ++  LC  G   +   ++  +  +
Sbjct: 352 PLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGM 411

Query: 406 GFLSSVDS 413
           G   +V S
Sbjct: 412 GCPPNVSS 419



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 164/335 (48%), Gaps = 10/335 (2%)

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           +MK++   C+  +  NE+++ L  +      PD I+   +I+ F    ++  A  +M+ +
Sbjct: 71  LMKLLNRSCKAGKF-NESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL 129

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
                 PD+  Y ++I GFC   R+E A  +   MK  G   ++V Y+ ++  +C    +
Sbjct: 130 E-SHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKL 188

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
             AL++L ++  +  +C P V+TYT +I+    +G + EA+ +L+ M A G  P+  T +
Sbjct: 189 GLALKVLDQLLLD--NCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYN 246

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            +I+G C EG ++ A +LI  + + G       Y+ L+   +   +  E EKL ++M + 
Sbjct: 247 AIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 306

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV--LLLGLCRKNH 428
           G +P+ +  S++I  LC  G++ E       + K+     +  D +S   L+  LC++  
Sbjct: 307 GCEPNKVTYSILISSLCRFGRIDEAI----SVLKVMIEKELTPDTYSYDPLISALCKEGR 362

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
              A  +  +M+           + I+  L K+G+
Sbjct: 363 LDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGN 397



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 144/286 (50%), Gaps = 12/286 (4%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW-----VLRKMPEFDLRPDTIIYNN 169
           +++ +   +GC   V    + +N+  +A L N+  W     ++ +M      P+ + Y+ 
Sbjct: 263 ELITSLTSKGCKPDV----ISYNILLRAFL-NQGKWDEGEKLVAEMFSRGCEPNKVTYSI 317

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I   C  G +  A  ++K M   +L PD  +Y  +I   C  GRL+ A G+   M  +G
Sbjct: 318 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNG 377

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           C  ++V Y+ +L  +C+ G+  +ALE+  ++   G  C PNV +Y ++I      G    
Sbjct: 378 CLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG--CPPNVSSYNTMISALWSCGDRSR 435

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           ALG++  M + G  P+ +T ++LI   C +G ++EA  L+D +   G   +   Y+ +++
Sbjct: 436 ALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLL 495

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
            L + +R+ +A  +F++M+  G +P+     ++I  +   G   E 
Sbjct: 496 GLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEA 541



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 143/270 (52%), Gaps = 5/270 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+I    +IKGF N   +E A  + ++++ H    ++ AY+A++ G C++  +E A ++
Sbjct: 101 PDVILCTKLIKGFFNFKNIEKASRVMEILESH-TEPDVFAYNAVISGFCKVNRIEAATQV 159

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M+  G    P++VTY  +I   C +  +  AL +LD++    C P  +T + LI+  
Sbjct: 160 LNRMKARG--FLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEAT 217

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
            VEG ++EA +L+++++A G +     Y++++  + +   ++ A +L + + + G KPD 
Sbjct: 218 IVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDV 277

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           ++ ++++R     G+  EG  L  ++   G     +   +S+L+  LCR     EA  + 
Sbjct: 278 ISYNILLRAFLNQGKWDEGEKLVAEMFSRG--CEPNKVTYSILISSLCRFGRIDEAISVL 335

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
           + M++K +       D ++  L K G  +L
Sbjct: 336 KVMIEKELTPDTYSYDPLISALCKEGRLDL 365



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 38/241 (15%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LC   R+ +EA+ VL+ M E +L PDT  Y+ +I   C++G +  A  +M  M   
Sbjct: 318 LISSLCRFGRI-DEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISN 376

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PDI+ Y +++   C  G    A  +F  ++  GC  N+ +Y+ ++  +   G   RA
Sbjct: 377 GCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRA 436

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG------------ 301
           L ++  M  +G D  P+ +TY S+I   C  G+++EA+G+LD ME  G            
Sbjct: 437 LGMVPAMISKGVD--PDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVL 494

Query: 302 -----------------------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                                  C PN  T   LI+G    G   EA +L + + +   +
Sbjct: 495 LGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVI 554

Query: 339 S 339
           S
Sbjct: 555 S 555



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 2/186 (1%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + I +++     GC+  +     I     K   AN+A+ +  K+      P+   YN +I
Sbjct: 365 LAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMI 424

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
                 GD   A  ++  M    + PD ITY S+I   C  G +E+A GL   M++ G  
Sbjct: 425 SALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFR 484

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
             +++Y+ +L G+C++  ++ A+ +  EM ++G  C PN  TY  +I+     G   EA+
Sbjct: 485 PTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKG--CRPNETTYILLIEGIGFAGWRTEAM 542

Query: 292 GILDRM 297
            + + +
Sbjct: 543 ELANSL 548



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 8/156 (5%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVK----MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           N +  +++    +  GC  +V     M+  +++  +++R    A+ ++  M    + PD 
Sbjct: 397 NANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSR----ALGMVPAMISKGVDPDE 452

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           I YN++I   C  G +  A  L+  M      P +I+Y  ++ G C   R++DA G+F  
Sbjct: 453 ITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAE 512

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           M   GC  N   Y  L++GI   G    A+EL   +
Sbjct: 513 MIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSL 548


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 168/333 (50%), Gaps = 4/333 (1%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
            +P  I        E G    V+   ++ N   K     +A  +  ++ +  LRP T+ +
Sbjct: 202 NSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSF 261

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N +I   C+  ++     L K M    +YPD+ TY  +I G C  GRL+ A  LF  M++
Sbjct: 262 NTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQ 321

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   N + ++AL+DG  R   M+ A+    +M   G    P++V Y +++   C  G +
Sbjct: 322 RGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMG--VKPDLVMYNTLLNGLCKVGDV 379

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            +A  ++D M+ +G  P+++T +TLI G+C EG+L+ A ++   +   G V     +++L
Sbjct: 380 NKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTAL 439

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +    R  R+++AE+   +M+ +G+KPD    +++I   C  G V  GF L ++++  G 
Sbjct: 440 ISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGH 499

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
              V +  ++VL+ GLC++     A  L   ML
Sbjct: 500 KPGVIT--YNVLMNGLCKQGQMKNANMLLEAML 530



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 2/208 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           ++R  + AM    +M    ++PD ++YN ++   C+ GD+  A +L+  M ++ + PD I
Sbjct: 340 RSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKI 399

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY ++I G+C  G LE A  + K M   G   + VA++AL+ G CR G +  A   L EM
Sbjct: 400 TYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREM 459

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            + G    P+  TYT VI  +C KG +K    +L  M+  G  P  +T + L+ G C +G
Sbjct: 460 VEAG--MKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQG 517

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            +  A  L++ ++  G       Y+ L+
Sbjct: 518 QMKNANMLLEAMLNLGVTPDDITYNILL 545



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 2/147 (1%)

Query: 114 IDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++ +   EEG V+ +V    +I   C   R+  +A   LR+M E  ++PD   Y  VI 
Sbjct: 418 MEIRKGMNEEGVVLDNVAFTALISGFCRDGRV-RDAERTLREMVEAGMKPDDATYTMVID 476

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            +C+KG++    +L+K M +    P +ITY  ++ G C  G++++A  L + M   G   
Sbjct: 477 GYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTP 536

Query: 233 NLVAYSALLDGICRLGSMERALELLGE 259
           + + Y+ LL+G C+ G  E  L+L  E
Sbjct: 537 DDITYNILLEGHCKNGKAEDLLKLRNE 563


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 168/330 (50%), Gaps = 9/330 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I V+E     GC  +  +  ++ N +C++ R+ ++A   L  M  +   PDTI Y  V++
Sbjct: 305 IQVLEQMSGHGCAANTTLCNIVINTICKQGRV-DDAFQFLNNMGSYGCSPDTISYTTVLK 363

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C       A EL+K M   +  P+ +T+ + I   C  G +E A  L + M  HGC  
Sbjct: 364 GLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEV 423

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N+V Y+AL++G C  G ++ ALEL   M      C PN +TYT+++   C    +  A  
Sbjct: 424 NIVTYNALVNGFCVQGRVDSALELFYSMP-----CKPNTITYTTLLTGLCNAERLDAAAE 478

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L  M    CAPN VT + L+  FC +G +DEA +L+++++  G   +   Y++L+  + 
Sbjct: 479 LLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGIT 538

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
                +EA +L   ++++GV PD +  S +I  L    +V E   ++  ++ +G      
Sbjct: 539 NDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPK-- 596

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           + I++ +LL LC++ ++  A     +M+  
Sbjct: 597 AVIYNKILLALCKRCNTDGAIDFFAYMVSN 626



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 159/310 (51%), Gaps = 8/310 (2%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           K+I NLC + R  ++A  VLR         D   YN ++  +C  G + AA  L+  M +
Sbjct: 83  KLIRNLCRRGR-TSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPV 141

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               PD  TY  +I+G C+ GR+ +A  L   M   GC  ++V Y+ LL+ +C+     +
Sbjct: 142 A---PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQ 198

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+E+L EM  +G  C+PN+VTY  +I   C +G + +A   L+R+ + G  P+ V+ +T+
Sbjct: 199 AMEVLDEMRAKG--CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTV 256

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +KG C     ++  +L  +++    + +   +  LV    R   ++ A ++  +M   G 
Sbjct: 257 LKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGC 316

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
             +   C+++I  +C  G+V + F    ++   G   S D+  ++ +L GLCR     +A
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYG--CSPDTISYTTVLKGLCRAERWEDA 374

Query: 433 AKLARFMLKK 442
            +L + M++K
Sbjct: 375 KELLKEMVRK 384



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 163/342 (47%), Gaps = 11/342 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+ +  S++ D++      GC  SV    V+     K+    +AM VL +M     
Sbjct: 156 CDRGRVGEALSLLDDMLH----RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGC 211

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + YN +I   C +G +  A E +  +      PD ++Y +++KG C A R ED   
Sbjct: 212 TPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEE 271

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M    C  N V +  L+   CR G +ERA+++L +M   G  C+ N      VI  
Sbjct: 272 LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHG--CAANTTLCNIVINT 329

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G + +A   L+ M + GC+P+ ++ +T++KG C     ++A +L+ ++V      +
Sbjct: 330 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 389

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              +++ +  L +   +++A  L  +M   G + + +  + ++   C+ G+V     L+ 
Sbjct: 390 EVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFY 449

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +         ++  ++ LL GLC       AA+L   ML+K
Sbjct: 450 SMP-----CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK 486



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 152/302 (50%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ R+  EA+ +L  M     +P  + Y  ++   C+      A E++  M   
Sbjct: 151 IIRGLCDRGRVG-EALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAK 209

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+I+TY  +I G C  GR++DA      +  +G   + V+Y+ +L G+C     E  
Sbjct: 210 GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 269

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL  EM ++  +C PN VT+  +++ FC  GM++ A+ +L++M   GCA N    + +I
Sbjct: 270 EELFAEMMEK--NCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVI 327

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C +G +D+A+Q ++ + + G       Y++++  L R +R ++A++L  +M+     
Sbjct: 328 NTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP 387

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  +  I  LC  G + +   L E + + G    V+   ++ L+ G C +     A 
Sbjct: 388 PNEVTFNTFICILCQKGLIEQATMLIEQMSEHG--CEVNIVTYNALVNGFCVQGRVDSAL 445

Query: 434 KL 435
           +L
Sbjct: 446 EL 447



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 130/258 (50%), Gaps = 7/258 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++E   E GC V++     + N  C + R+ + A+ +   MP    +P+TI Y  ++   
Sbjct: 412 LIEQMSEHGCEVNIVTYNALVNGFCVQGRV-DSALELFYSMP---CKPNTITYTTLLTGL 467

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C    + AA EL+  M   D  P+++T+  ++  FC  G +++A  L + M  HGC  NL
Sbjct: 468 CNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNL 527

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + Y+ LLDGI    + E ALELL  +   G   SP++VTY+S+I +   +  ++EA+ + 
Sbjct: 528 ITYNTLLDGITNDCNSEEALELLHGLVSNG--VSPDIVTYSSIIGVLSREDRVEEAIKMF 585

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             ++ LG  P  V  + ++   C   N D A      +V+ G + +   Y +L+  L   
Sbjct: 586 HIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANE 645

Query: 355 KRLKEAEKLFSKMLASGV 372
             LKE   L  ++ + GV
Sbjct: 646 DFLKETRDLLRELCSRGV 663



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 133/259 (51%), Gaps = 11/259 (4%)

Query: 133 KVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V FN     LC+K  L  +A  ++ +M E     + + YN ++  FC +G + +A EL 
Sbjct: 390 EVTFNTFICILCQKG-LIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELF 448

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M      P+ ITY +++ G CNA RL+ A  L   M +  CA N+V ++ L+   C+ 
Sbjct: 449 YSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQK 505

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G M+ A+EL+ +M + G  C+PN++TY +++         +EAL +L  + + G +P+ V
Sbjct: 506 GLMDEAIELVEQMMEHG--CTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIV 563

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S++I     E  ++EA ++   V   G       Y+ +++ L +      A   F+ M
Sbjct: 564 TYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYM 623

Query: 368 LASGVKPDGLACSVMIREL 386
           +++G  P+ L    +I  L
Sbjct: 624 VSNGCMPNELTYITLIEGL 642



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +P+V   T +I+  C +G   +A  +L   E  G A +    +TL+ G+C  G LD A +
Sbjct: 75  APDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARR 134

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           LI  +       +   Y+ ++  L    R+ EA  L   ML  G +P  +  +V++  +C
Sbjct: 135 LIASMPVAPDAYT---YTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVC 191

Query: 388 LG---GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
                GQ +E   + +++   G   ++ +  ++V++ G+CR+    +A
Sbjct: 192 KSTGFGQAME---VLDEMRAKGCTPNIVT--YNVIINGMCREGRVDDA 234



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + EA  ++DR  + G AP+    + LI+  C  G   +A +++      G+      Y++
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           LV    R  +L  A +L + M    V PD    + +IR LC  G+V E   L +D+   G
Sbjct: 119 LVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 407 FLSSVDSDIHSVLLLGLCR 425
              SV +  ++VLL  +C+
Sbjct: 176 CQPSVVT--YTVLLEAVCK 192



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
           S SS    ++ +  L+    L EA +L  +  + G  PD   C+ +IR LC  G+  +  
Sbjct: 39  SASSPNPANARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAA 98

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +    E+ G  ++VD   ++ L+ G CR      A +L
Sbjct: 99  RVLRAAERSG--TAVDVFAYNTLVAGYCRYGQLDAARRL 135


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 161/338 (47%), Gaps = 34/338 (10%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ R+ +EA+ +L +M      P ++ +N +I   C+KGDM+   +L+  M L    P
Sbjct: 217 LCKEDRI-DEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVP 275

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + +TY ++I G C  G+L+ A  L   M    C  N V Y  L++G+ + G     + LL
Sbjct: 276 NEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLL 335

Query: 258 GEMEKEGGD---------------------------------CSPNVVTYTSVIQIFCGK 284
             +E+ G                                   C PN+V Y+++I   C +
Sbjct: 336 SSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCRE 395

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + EA  IL  M   GC PN  T S+LIKGF   GN  +A ++  ++     V +  CY
Sbjct: 396 GKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICY 455

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           S L+  L    +L+EA  +++ ML  G++PD +A S MI  LC  G V  G  L+ ++  
Sbjct: 456 SVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLC 515

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               S  D   +++LL  LC++N    A  L   ML +
Sbjct: 516 QESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDR 553



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 153/283 (54%), Gaps = 4/283 (1%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           ++ P+ + +N VI+  C+ G +  A E+ + M +    PD+ TY +++ G C   R+++A
Sbjct: 167 NISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 226

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L   M+  GC  + V ++ L++G+C+ G M R  +L+  M  +G  C PN VTY ++I
Sbjct: 227 VLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKG--CVPNEVTYNTII 284

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C KG + +A+ +LDRM A  C PN VT  TLI G   +G   +   L+  +   G  
Sbjct: 285 NGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHH 344

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
           ++   YS+L+  L + ++ +EA  L+ KM+  G +P+ +  S +I  LC  G++ E   +
Sbjct: 345 ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEI 404

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
             ++   G   + ++  +S L+ G  +  +S +A ++ + M K
Sbjct: 405 LCEMVNKG--CTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAK 445



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/399 (27%), Positives = 189/399 (47%), Gaps = 18/399 (4%)

Query: 70  FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV 129
           F S SQMG           SY+     +    E      +   +  V +  K E  V   
Sbjct: 51  FKSASQMG-----------SYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIE 99

Query: 130 KMMKVIFNLCEKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           K   ++F    KA L  +A+ +  +M  EF  R     +N+V+ +  ++G    A E  +
Sbjct: 100 KNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYE 159

Query: 189 -GMG-LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
            G+G   ++ P+++++  +IK  C  G ++ A  +F+ M    C  ++  Y  L+DG+C+
Sbjct: 160 CGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCK 219

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
              ++ A+ LL EM+ EG  C P+ VT+  +I   C KG M     ++D M   GC PN 
Sbjct: 220 EDRIDEAVLLLDEMQIEG--CFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNE 277

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT +T+I G C++G LD+A  L+D++VA   V +   Y +L+  LV+  R  +   L S 
Sbjct: 278 VTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSS 337

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +   G   +  A S +I  L    +  E   L++ + + G   ++   ++S L+ GLCR+
Sbjct: 338 LEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNI--VVYSALIDGLCRE 395

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
               EA ++   M+ K           +++   K+G+ +
Sbjct: 396 GKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQ 434



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 132/268 (49%), Gaps = 18/268 (6%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+GC  ++ +   + + LC + +L +EA  +L +M      P+   Y+++I+ F + G+ 
Sbjct: 375 EKGCQPNIVVYSALIDGLCREGKL-DEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNS 433

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  + K M   +  P+ I Y  +I G C  G+L +A  ++  M   G   ++VAYS++
Sbjct: 434 QKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSM 493

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G+C  GS+E  L+L  EM  +  D  P+VVTY  +++  C +  +  A+ +L+ M   
Sbjct: 494 IHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDR 553

Query: 301 GCAPNRVTISTLIKGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
           GC P+ +T +  +     + N   +  + +D+               LVV L + +R+  
Sbjct: 554 GCNPDLITCNIFLNALREKLNPPQDGREFLDE---------------LVVRLHKRQRIVG 598

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELC 387
           A K+   ML   + P+      +I ELC
Sbjct: 599 AAKIIEVMLQKFLPPNASTWERIIPELC 626


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 174/337 (51%), Gaps = 20/337 (5%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F++N+A E           + +V+   + GC   +     + N LC++  + + A+ 
Sbjct: 196 HGLFLHNKASEA----------VALVDQMVQRGCQPDLVTYGTVVNGLCKRGDI-DLALS 244

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L+KM +  +  D +IYN +I   C+   M  A  L   M    + PD+ TY S+I   C
Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLC 304

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N GR  DA  L   M       N+V +SAL+D   + G +  A +L  EM K   D  P+
Sbjct: 305 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PD 362

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY+S+I  FC    + EA  + + M +  C PN VT STLIKGFC    ++E  +L  
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFR 422

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V +   Y++L+    + +    A+ +F +M++ GV P+ L  ++++  LC  G
Sbjct: 423 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 482

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCR 425
           ++ +   ++E +++    S+++ DI++  +++ G+C+
Sbjct: 483 KLAKAMVVFEYLQR----STMEPDIYTYNIMIEGMCK 515



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 161/333 (48%), Gaps = 8/333 (2%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           ++I + E  +  G    +    +  N  C +++L+  A+ VL KM +    PD +  +++
Sbjct: 101 LVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLS-LALAVLAKMMKLGYEPDIVTLSSL 159

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +  +C    +  A  L+  M  +   PD  T+ ++I G     +  +A  L   M + GC
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             +LV Y  +++G+C+ G ++ AL LL +MEK  G    +VV Y ++I   C    M +A
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALSLLKKMEK--GKIEADVVIYNTIIDGLCKYKHMDDA 277

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           L +   M+  G  P+  T S+LI   C  G   +A +L+  ++      +   +S+L+  
Sbjct: 278 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 337

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE-DIEKIGFLS 409
            V+  +L EAEKL+ +M+   + PD    S +I   C+  ++ E   ++E  I K  F +
Sbjct: 338 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 397

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            V    +S L+ G C+     E  +L R M ++
Sbjct: 398 VV---TYSTLIKGFCKAKRVEEGMELFREMSQR 427



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 149/302 (49%), Gaps = 5/302 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R + +A  +L  M E  + P+ + ++ +I  F ++G ++ A++L   M    + P
Sbjct: 303 LCNYGRWS-DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 361

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI TY S+I GFC   RL++A  +F++M    C  N+V YS L+ G C+   +E  +EL 
Sbjct: 362 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELF 421

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM + G     N VTYT++I  F        A  +  +M ++G  PN +T + L+ G C
Sbjct: 422 REMSQRG--LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLC 479

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G L +A  + + +           Y+ ++  + +  ++++  +LF  +   GV P+ +
Sbjct: 480 KNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVI 539

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           A + MI   C  G   E   L + +++ G L   +S  ++ L+    R      +A+L +
Sbjct: 540 AYNTMISGFCRKGSKEEADSLLKKMKEDGPLP--NSGTYNTLIRARLRDGDREASAELIK 597

Query: 438 FM 439
            M
Sbjct: 598 EM 599



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 162/335 (48%), Gaps = 35/335 (10%)

Query: 70  FPSQSQMGIR--FFIWAALQSSYRHSSFMYNRACEMSRI-------KQNPSIII--DVVE 118
           F      GIR   F +++L S   +    Y R  + SR+       K NP+++    +++
Sbjct: 281 FTEMDNKGIRPDVFTYSSLISCLCN----YGRWSDASRLLSDMIERKINPNVVTFSALID 336

Query: 119 AYKEEGCVVSVK-----MMK------------VIFNLCEKARLANEAMWVLRKMPEFDLR 161
           A+ +EG +V  +     M+K            +I   C   RL +EA  +   M   D  
Sbjct: 337 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL-DEAKHMFELMISKDCF 395

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+ + Y+ +I+ FC+   +    EL + M    L  + +TY ++I GF  A   ++A  +
Sbjct: 396 PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 455

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           FK M   G   N++ Y+ LLDG+C+ G + +A+ +   +++   +  P++ TY  +I+  
Sbjct: 456 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME--PDIYTYNIMIEGM 513

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G +++   +   +   G +PN +  +T+I GFC +G+ +EA  L+ K+   G + + 
Sbjct: 514 CKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNS 573

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           G Y++L+   +R    + + +L  +M + G   D 
Sbjct: 574 GTYNTLIRARLRDGDREASAELIKEMRSCGFAGDA 608



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 131/265 (49%), Gaps = 7/265 (2%)

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           +I+  E M+ +G+     D+ TY   I  FC   +L  A  +   M + G   ++V  S+
Sbjct: 102 VISLGEQMQTLGI---SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           LL+G C    +  A+ L+ +M + G    P+  T+T++I          EA+ ++D+M  
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMG--YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ 216

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            GC P+ VT  T++ G C  G++D A  L+ K+  G   +    Y++++  L + K + +
Sbjct: 217 RGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDD 276

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A  LF++M   G++PD    S +I  LC  G+  +   L  D+ +     +V +   S L
Sbjct: 277 ALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVT--FSAL 334

Query: 420 LLGLCRKNHSVEAAKLARFMLKKRI 444
           +    ++   VEA KL   M+K+ I
Sbjct: 335 IDAFVKEGKLVEAEKLYDEMIKRSI 359



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 116/233 (49%), Gaps = 8/233 (3%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +++DA  LF  M +     ++V ++ LL  + ++   E  + L  +M+  G   S ++ T
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLG--ISHDLYT 120

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y+  I  FC +  +  AL +L +M  LG  P+ VT+S+L+ G+C    + +A  L+D++V
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV 180

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G       +++L+  L    +  EA  L  +M+  G +PD +    ++  LC  G + 
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDID 240

Query: 394 EGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
               L + +EK      +++D  I++ ++ GLC+  H  +A  L   M  K I
Sbjct: 241 LALSLLKKMEK----GKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGI 289



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 99/186 (53%), Gaps = 3/186 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +AR  + A  V ++M    + P+ + YN ++   C+ G +  A  + + +    + PDI 
Sbjct: 445 QARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIY 504

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  MI+G C AG++ED   LF  +   G + N++AY+ ++ G CR GS E A  LL +M
Sbjct: 505 TYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           +++G    PN  TY ++I+     G  + +  ++  M + G A +  TI  L+     +G
Sbjct: 565 KEDGP--LPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDG 621

Query: 321 NLDEAY 326
            LD+++
Sbjct: 622 RLDKSF 627



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 132/282 (46%), Gaps = 17/282 (6%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D I  ++ + LF   GDM+ +            +P I+ +  ++       + E    L 
Sbjct: 60  DIIKVDDAVDLF---GDMVKSRP----------FPSIVEFNKLLSAVAKMNKFELVISLG 106

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + M+  G + +L  YS  ++  CR   +  AL +L +M K G +  P++VT +S++  +C
Sbjct: 107 EQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYE--PDIVTLSSLLNGYC 164

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
               + +A+ ++D+M  +G  P+  T +TLI G  +     EA  L+D++V  G      
Sbjct: 165 HSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV 224

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y ++V  L +   +  A  L  KM    ++ D +  + +I  LC    + +   L+ ++
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM 284

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +  G    V +  +S L+  LC      +A++L   M++++I
Sbjct: 285 DNKGIRPDVFT--YSSLISCLCNYGRWSDASRLLSDMIERKI 324


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 158/298 (53%), Gaps = 6/298 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           NEAM +L +M    L PD   YN +IR  C++G +  A EL+  +      PD+I+Y  +
Sbjct: 234 NEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNIL 293

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EKEG 264
           ++ F N G+ ++   L   M   GC  N V YS L+  +CR G ++ A+ +L  M EKE 
Sbjct: 294 LRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKE- 352

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
              +P+  +Y  +I   C +G +  A+GI+D M + GC P+ V  +T++   C  GN ++
Sbjct: 353 --LTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQ 410

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A ++ +K+   G   +   Y++++  L        A  +   M++ G+ PD +  + +I 
Sbjct: 411 ALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLIS 470

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            LC  G V E   L +D+E+ GF  +V S  ++++LLGLC+     +A  +   M++K
Sbjct: 471 CLCRDGLVEEAIGLLDDMEQSGFRPTVIS--YNIVLLGLCKVRRIDDAIGMFAEMIEK 526



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 144/286 (50%), Gaps = 12/286 (4%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW-----VLRKMPEFDLRPDTIIYNN 169
           +++ +   +GC   V    + +N+  +A L N+  W     ++ +M      P+ + Y+ 
Sbjct: 273 ELITSLTSKGCEPDV----ISYNILLRAFL-NQGKWDEGEKLVAEMFSRGCEPNKVTYSI 327

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I   C  G +  A  ++K M   +L PD  +Y  +I   C  GRL+ A G+   M  +G
Sbjct: 328 LISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNG 387

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           C  ++V Y+ +L  +C+ G+  +ALE+  ++   G  C PNV +Y ++I      G    
Sbjct: 388 CLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG--CPPNVSSYNTMISALWSCGDRSR 445

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           ALG++  M + G  P+ +T ++LI   C +G ++EA  L+D +   G   +   Y+ +++
Sbjct: 446 ALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLL 505

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
            L + +R+ +A  +F++M+  G +P+     ++I  +   G   E 
Sbjct: 506 GLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEA 551



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 163/337 (48%), Gaps = 10/337 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
             +MK++   C+  +  NE+++ L  +      PD I+   +I+ F    ++  A  +M+
Sbjct: 79  THLMKLLNRSCKAGKF-NESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVME 137

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +      PD+  Y ++I GFC   ++E A  +   MK  G   ++V Y+ ++  +C   
Sbjct: 138 ILE-SHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 196

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  AL +L ++  +  +C P V+TYT +I+    +G + EA+ +L+ M A G  P+  T
Sbjct: 197 KLGLALTVLDQLLLD--NCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYT 254

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + +I+G C EG ++ A +LI  + + G       Y+ L+   +   +  E EKL ++M 
Sbjct: 255 YNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMF 314

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV--LLLGLCRK 426
           + G +P+ +  S++I  LC  G++ E       + K+     +  D +S   L+  LC++
Sbjct: 315 SRGCEPNKVTYSILISSLCRFGRIDEAI----SVLKVMIEKELTPDTYSYDPLISALCKE 370

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
                A  +  +M+           + I+  L K+G+
Sbjct: 371 GRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGN 407



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 143/270 (52%), Gaps = 5/270 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+I    +IKGF N   +E A  + ++++ H    ++ AY+A++ G C++  +E A ++
Sbjct: 111 PDVILCTKLIKGFFNFKNIEKASRVMEILESH-TEPDVFAYNAVISGFCKVNQIEAATQV 169

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M+  G    P++VTY  +I   C +  +  AL +LD++    C P  +T + LI+  
Sbjct: 170 LNRMKARG--FLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEAT 227

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
            VEG ++EA +L+++++A G +     Y++++  + +   ++ A +L + + + G +PD 
Sbjct: 228 IVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDV 287

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           ++ ++++R     G+  EG  L  ++   G     +   +S+L+  LCR     EA  + 
Sbjct: 288 ISYNILLRAFLNQGKWDEGEKLVAEMFSRG--CEPNKVTYSILISSLCRFGRIDEAISVL 345

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
           + M++K +       D ++  L K G  +L
Sbjct: 346 KVMIEKELTPDTYSYDPLISALCKEGRLDL 375



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 38/241 (15%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LC   R+ +EA+ VL+ M E +L PDT  Y+ +I   C++G +  A  +M  M   
Sbjct: 328 LISSLCRFGRI-DEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISN 386

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PDI+ Y +++   C  G    A  +F  ++  GC  N+ +Y+ ++  +   G   RA
Sbjct: 387 GCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRA 446

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG------------ 301
           L ++  M  +G D  P+ +TY S+I   C  G+++EA+G+LD ME  G            
Sbjct: 447 LGMVPAMISKGID--PDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVL 504

Query: 302 -----------------------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                                  C PN  T   LI+G    G   EA +L + + +   +
Sbjct: 505 LGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVI 564

Query: 339 S 339
           S
Sbjct: 565 S 565



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 2/186 (1%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + I +++     GC+  +     I     K   AN+A+ +  K+      P+   YN +I
Sbjct: 375 LAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMI 434

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
                 GD   A  ++  M    + PD ITY S+I   C  G +E+A GL   M++ G  
Sbjct: 435 SALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFR 494

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
             +++Y+ +L G+C++  ++ A+ +  EM ++G  C PN  TY  +I+     G   EA+
Sbjct: 495 PTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKG--CRPNETTYILLIEGIGFAGWRTEAM 552

Query: 292 GILDRM 297
            + + +
Sbjct: 553 ELANSL 558



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 8/152 (5%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVK----MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           N +  +++    +  GC  +V     M+  +++  +++R    A+ ++  M    + PD 
Sbjct: 407 NANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSR----ALGMVPAMISKGIDPDE 462

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           I YN++I   C  G +  A  L+  M      P +I+Y  ++ G C   R++DA G+F  
Sbjct: 463 ITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAE 522

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           M   GC  N   Y  L++GI   G    A+EL
Sbjct: 523 MIEKGCRPNETTYILLIEGIGFAGWRTEAMEL 554


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 161/318 (50%), Gaps = 14/318 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC+  R+ +EA+ +  KM E ++ PD+  Y  +I    + G +  A  L + +   
Sbjct: 294 VILGLCQNDRI-DEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHS 352

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P  + Y S+I G C A   +DA  LF  M R GC  + V Y+ ++D  C+ G +E A
Sbjct: 353 GVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEA 412

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L+ +M ++G    P+VVTY +V+   C    ++EAL + + ME LGC PNR + +T+I
Sbjct: 413 CDLIKKMIEDGH--VPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTII 470

Query: 314 KGFCVE---------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
            G C +         G LDEA++L+ ++   G V     YS+L+  L    R+ +A  L 
Sbjct: 471 LGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLL 530

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
             M+    KP  +  + +I  LC  G++ E   + + +   G   S D   ++ L+ G C
Sbjct: 531 EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG--QSPDVVTYNTLVHGHC 588

Query: 425 RKNHSVEAAKLARFMLKK 442
           R   +  A +L   M+ +
Sbjct: 589 RAGQTERARELLSDMVAR 606



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 165/348 (47%), Gaps = 19/348 (5%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC  S     V+ +   K  +  EA  +++KM E    PD + YN V+   C+   +  A
Sbjct: 388 GCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEA 447

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG---------LFKVMKRHGCAANL 234
             L   M  +   P+  ++ ++I G C   +++ AC          L K M   G   ++
Sbjct: 448 LLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDV 507

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V YS L+ G+C +  ++ A  LL +M K    C P VVT  ++I   C  G +KEA  +L
Sbjct: 508 VTYSTLISGLCSIARVDDARHLLEDMVKR--QCKPTVVTQNTLIHGLCKAGRIKEAREVL 565

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           D M + G +P+ VT +TL+ G C  G  + A +L+  +VA G   +   Y++LV  L + 
Sbjct: 566 DAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKA 625

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            RL EA  +F++M +SG  P+    + +I   C  GQV  G  L+ ++   G   S D  
Sbjct: 626 NRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI--SPDHV 683

Query: 415 IHSVLLLGLCRKNHSVEAAKL---ARFMLKKRIWLQGPY---VDKIVE 456
           ++  L   LC+   S  A ++    R  L+   W    Y   VD ++E
Sbjct: 684 VYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLE 731



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 146/301 (48%), Gaps = 13/301 (4%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA   N+A  + +K+    + P T+ Y ++I   C       A EL   M      P  +
Sbjct: 335 KAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPV 394

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  MI   C  G LE+AC L K M   G   ++V Y+ ++DG+C+   +E AL L  EM
Sbjct: 395 TYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEM 454

Query: 261 EKEGGDCSPNVVTYTSV---------IQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
           E+ G  C+PN  ++ ++         I   C +G + EA  +L RM   G  P+ VT ST
Sbjct: 455 ERLG--CTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYST 512

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           LI G C    +D+A  L++ +V      +    ++L+  L +  R+KEA ++   M++SG
Sbjct: 513 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 572

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
             PD +  + ++   C  GQ      L  D+   G   +V +  ++ L+ GLC+ N   E
Sbjct: 573 QSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT--YTALVSGLCKANRLPE 630

Query: 432 A 432
           A
Sbjct: 631 A 631



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 40/310 (12%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I   C++ +L +EA  +L++M +    PD + Y+ +I   C    +  A  L++ M    
Sbjct: 479 IDQACQRGKL-DEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQ 537

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             P ++T  ++I G C AGR+++A  +   M   G + ++V Y+ L+ G CR G  ERA 
Sbjct: 538 CKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERAR 597

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           ELL +M   G   +PNVVTYT+++   C    + EA G+  +M++ GCAPN  T + LI 
Sbjct: 598 ELLSDMVARG--LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALIL 655

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR------------------ 356
           GFC  G +D   +L  ++V  G       Y +L  EL ++ R                  
Sbjct: 656 GFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSE 715

Query: 357 -------------LKEAEKL------FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
                        L EA K+         M+  G  P    C+ ++  LC  GQ  E   
Sbjct: 716 AWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARA 775

Query: 398 LYEDIEKIGF 407
           + E+I  + +
Sbjct: 776 VLEEIMDLAY 785



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 136/286 (47%), Gaps = 18/286 (6%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C ++R+     ++ D+V   K +     V    +I  LC+  R+  EA  VL  M     
Sbjct: 518 CSIARVDDARHLLEDMV---KRQCKPTVVTQNTLIHGLCKAGRI-KEAREVLDAMVSSGQ 573

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD + YN ++   C  G    A EL+  M    L P+++TY +++ G C A RL +ACG
Sbjct: 574 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACG 633

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +F  MK  GCA NL  Y+AL+ G C  G ++  L+L GEM   G   SP+ V Y ++   
Sbjct: 634 VFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAG--ISPDHVVYGTLAAE 691

Query: 281 FCGKGMMKEALGILD------RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            C  G    AL IL       R EA G    R  +  L++     G ++ A   +  +V 
Sbjct: 692 LCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEA----GKMEMALGFVRDMVR 747

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM--LASGVKPDGLA 378
           GG + +    +SLV  L ++ +  EA  +  ++  LA G K  G A
Sbjct: 748 GGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAYGGKARGKA 793



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 164/372 (44%), Gaps = 49/372 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+  LC+ AR+ ++A+ + R M E  +       ++V+    + G +   DE ++     
Sbjct: 151 VVVALCKAARV-DDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRI---DEALQVYREN 206

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P ++T   +++GFC+ G+++ A  L + M    CA + V+Y  +LDG+C+ G +E A
Sbjct: 207 RREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEA 266

Query: 254 LELLGEME----KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           + L G+ E           P++  Y  VI   C    + EA+ + ++M     +P+  + 
Sbjct: 267 VRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSY 326

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
             LI G    G L++A  L  K++  G   S   Y+SL+  L       +A +LF+ M  
Sbjct: 327 GILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR 386

Query: 370 SGVKPDGLACSVMIRELCLGG-------------------------QVLEGFC------- 397
            G  P  +  +VMI   C  G                          V++G C       
Sbjct: 387 RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEE 446

Query: 398 ---LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR----FMLKKRIWLQGPY 450
              L+ ++E++G   +  S  H+ ++LGLC+++   +A +  +    F L KR+   G  
Sbjct: 447 ALLLFNEMERLGCTPNRRS--HNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHV 504

Query: 451 VDKIVEHLKKSG 462
            D +      SG
Sbjct: 505 PDVVTYSTLISG 516



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 120/246 (48%), Gaps = 14/246 (5%)

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRLGSMERA 253
           ++P  + + S+I+G+CN GR  +A  +F +M+  H    ++  Y+ L+D + +    E  
Sbjct: 6   IFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDV--YNVLIDSLSKRQETEAV 63

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +++  M   G  C P+  T+T+++   C  G M EA  ++D M +    P   T S L 
Sbjct: 64  KKMVQVMVDRG--CFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLA 121

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C+ G+++ A+QL++ +     V++   Y+ +VV L +  R+ +A +L   M    + 
Sbjct: 122 HELCLRGSMERAFQLLEIM----PVANSSAYNIVVVALCKAARVDDALELARTMSEKRIP 177

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
               +   ++  L   G++ E   +Y +  +   L +++     VLL G C +    +A 
Sbjct: 178 LAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCLVTLN-----VLLEGFCSRGQVDKAR 232

Query: 434 KLARFM 439
           +L R M
Sbjct: 233 ELLRAM 238



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 136/347 (39%), Gaps = 81/347 (23%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P   +YN +I    ++ +  A  ++++ M     +PD  T+ +++ G C AG++++A  +
Sbjct: 42  PYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELV 101

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M+           S L   +C  GSMERA +LL  M         N   Y  V+   
Sbjct: 102 MDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMP------VANSSAYNIVVVAL 155

Query: 282 CGKGMMKEAL---------------GILDRM-----------EALGC------APNRVTI 309
           C    + +AL               G LD +           EAL         P  VT+
Sbjct: 156 CKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCLVTL 215

Query: 310 STLIKGFCVEGNLDEAYQLI----DKVVAGGSVS-----SGGCYSSLVVELVR------- 353
           + L++GFC  G +D+A +L+    D+  A   VS      G C +  V E VR       
Sbjct: 216 NVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDREL 275

Query: 354 -------------------------TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
                                      R+ EA ++F KM    V PD  +  ++I  L  
Sbjct: 276 PSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAK 335

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            G++ +   L++ +   G   S  +  ++ L+ GLC  N   +A +L
Sbjct: 336 AGKLNDARNLFQKLLHSGVTPSTVA--YTSLIHGLCMANSFDDAREL 380


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 166/320 (51%), Gaps = 4/320 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++   E GC  +      + N+  K+     AM +LRKM E +++ D + Y+ +I   C
Sbjct: 215 LIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A  L   M +  +  +IITY  +I GFCNAGR +D   L + M +     N+V
Sbjct: 275 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVV 334

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            +S L+D   + G +  A EL  EM   G   +P+ +TYTS+I  FC +  + +A  ++D
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIHRG--IAPDTITYTSLIDGFCKENHLDKANQMVD 392

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M + GC PN  T + LI G+C    +D+  +L  K+   G V+    Y++L+       
Sbjct: 393 LMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 452

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           +L  A++LF +M++  V P+ +   +++  LC  G+  +   ++E IEK      +D  I
Sbjct: 453 KLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM--ELDIGI 510

Query: 416 HSVLLLGLCRKNHSVEAAKL 435
           +++++ G+C  +   +A  L
Sbjct: 511 YNIIIHGMCNASKVDDAWDL 530



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 182/355 (51%), Gaps = 10/355 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVE-AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVL 152
           S + N  C   R+ +   ++  +VE  +K +   ++     ++  LC   + A EAM ++
Sbjct: 162 STLINGLCLEGRVSEALELVDRMVEMGHKPDLITINT----LVNGLCLSGKEA-EAMLLI 216

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
            KM E+  +P+ + Y  V+ + C+ G    A EL++ M   ++  D + Y  +I G C  
Sbjct: 217 DKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKH 276

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G L++A  LF  M+  G   N++ Y+ L+ G C  G  +   +LL +M K     +PNVV
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR--KINPNVV 334

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           T++ +I  F  +G ++EA  +   M   G AP+ +T ++LI GFC E +LD+A Q++D +
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 394

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           V+ G   +   ++ L+    +  R+ +  +LF KM   GV  D +  + +I+  C  G++
Sbjct: 395 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 454

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
                L++++       ++ +  + +LL GLC    S +A ++   + K ++ L 
Sbjct: 455 NVAKELFQEMVSRKVPPNIVT--YKILLDGLCDNGESEKALEIFEKIEKSKMELD 507



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  + ++M    + PDTI Y ++I  FC++  +  A++++  M      P+I T+  +I
Sbjct: 351 EAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILI 410

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C A R++D   LF+ M   G  A+ V Y+ L+ G C LG +  A EL  EM      
Sbjct: 411 NGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR--K 468

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PN+VTY  ++   C  G  ++AL I +++E      +    + +I G C    +D+A+
Sbjct: 469 VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 528

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L   +   G       Y+ ++  L +   L EAE LF KM   G  PDG   +++IR  
Sbjct: 529 DLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAH 588

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDS 413
              G   +   L E++++ GF  SVD+
Sbjct: 589 LGDGDATKSVKLIEELKRCGF--SVDA 613



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 155/320 (48%), Gaps = 23/320 (7%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++ +M   F  C K  LA  AM    K+ +    P+TI ++ +I   C +G +  A EL+
Sbjct: 125 TLSIMINCFCRCRKLCLAFSAMG---KIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 181

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M  +   PD+IT  +++ G C +G+  +A  L   M  +GC  N V Y  +L+ +C+ 
Sbjct: 182 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS 241

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    A+ELL +ME+   +   + V Y+ +I   C  G +  A  + + ME  G   N +
Sbjct: 242 GQTALAMELLRKMEER--NIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNII 299

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + LI GFC  G  D+  +L+  ++      +   +S L+   V+  +L+EAE+L  +M
Sbjct: 300 TYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEM 359

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV------DSDIHS--VL 419
           +  G+ PD +  + +I          +GFC    ++K   +  +      D +I +  +L
Sbjct: 360 IHRGIAPDTITYTSLI----------DGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 409

Query: 420 LLGLCRKNHSVEAAKLARFM 439
           + G C+ N   +  +L R M
Sbjct: 410 INGYCKANRIDDGLELFRKM 429



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 133/273 (48%), Gaps = 3/273 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R  + A  +LR M +  + P+ + ++ +I  F ++G +  A+EL K M   
Sbjct: 304 LIGGFCNAGRWDDGAK-LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHR 362

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD ITY S+I GFC    L+ A  +  +M   GC  N+  ++ L++G C+   ++  
Sbjct: 363 GIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 422

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           LEL  +M   G     + VTY ++IQ FC  G +  A  +   M +    PN VT   L+
Sbjct: 423 LELFRKMSLRG--VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILL 480

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G  ++A ++ +K+         G Y+ ++  +    ++ +A  LF  +   GVK
Sbjct: 481 DGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 540

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           P     ++MI  LC  G + E   L+  +E+ G
Sbjct: 541 PGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 573



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 129/248 (52%), Gaps = 4/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P +I +  +        + +    L K M+  G A NL   S +++  CR   +  A   
Sbjct: 86  PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           +G++ K G +  PN +T++++I   C +G + EAL ++DRM  +G  P+ +TI+TL+ G 
Sbjct: 146 MGKIIKLGYE--PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 203

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C+ G   EA  LIDK+V  G   +   Y  ++  + ++ +   A +L  KM    +K D 
Sbjct: 204 CLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDA 263

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  S++I  LC  G +   F L+ ++E  G  +++ +  +++L+ G C      + AKL 
Sbjct: 264 VKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIIT--YNILIGGFCNAGRWDDGAKLL 321

Query: 437 RFMLKKRI 444
           R M+K++I
Sbjct: 322 RDMIKRKI 329



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 127/245 (51%), Gaps = 3/245 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +V+    +GC  +++   ++ N   KA   ++ + + RKM    +  DT+ YN +I+ FC
Sbjct: 390 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 449

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           E G +  A EL + M    + P+I+TY  ++ G C+ G  E A  +F+ +++     ++ 
Sbjct: 450 ELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIG 509

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ ++ G+C    ++ A +L   +  +G    P V TY  +I   C KG + EA  +  
Sbjct: 510 IYNIIIHGMCNASKVDDAWDLFCSLPLKG--VKPGVKTYNIMIGGLCKKGPLSEAELLFR 567

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +ME  G AP+  T + LI+    +G+  ++ +LI+++   G  S       +V++++   
Sbjct: 568 KMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG-FSVDASTIKMVIDMLSDG 626

Query: 356 RLKEA 360
           RLK++
Sbjct: 627 RLKKS 631



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 145/336 (43%), Gaps = 45/336 (13%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLF-----CEKGDMIAADELMKGMGLIDLYPDI 199
           A++A+ + R M      P  I ++   RLF      ++ D++ A  L K M L  +  ++
Sbjct: 69  ADDAIDLFRDMIHSRPLPTVIDFS---RLFSAIAKTKQYDLVLA--LCKQMELKGIAHNL 123

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            T   MI  FC   +L  A      + + G   N + +S L++G+C  G +  ALEL+  
Sbjct: 124 YTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDR 183

Query: 260 MEKEGGD---------------------------------CSPNVVTYTSVIQIFCGKGM 286
           M + G                                   C PN VTY  V+ + C  G 
Sbjct: 184 MVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQ 243

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
              A+ +L +ME      + V  S +I G C  G+LD A+ L +++   G  ++   Y+ 
Sbjct: 244 TALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNI 303

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+       R  +  KL   M+   + P+ +  SV+I      G++ E   L++++   G
Sbjct: 304 LIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRG 363

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              + D+  ++ L+ G C++NH  +A ++   M+ K
Sbjct: 364 I--APDTITYTSLIDGFCKENHLDKANQMVDLMVSK 397


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 161/338 (47%), Gaps = 34/338 (10%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ R+ +EA+ +L +M      P ++ +N +I   C+KGDM+   +L+  M L    P
Sbjct: 233 LCKEDRI-DEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVP 291

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + +TY ++I G C  G+L+ A  L   M    C  N V Y  L++G+ + G     + LL
Sbjct: 292 NEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLL 351

Query: 258 GEMEKEGGD---------------------------------CSPNVVTYTSVIQIFCGK 284
             +E+ G                                   C PN+V Y+++I   C +
Sbjct: 352 SSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCRE 411

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + EA  IL  M   GC PN  T S+LIKGF   GN  +A ++  ++     V +  CY
Sbjct: 412 GKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICY 471

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           S L+  L    +L+EA  +++ ML  G++PD +A S MI  LC  G V  G  L+ ++  
Sbjct: 472 SVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLC 531

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               S  D   +++LL  LC++N    A  L   ML +
Sbjct: 532 QESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDR 569



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 153/283 (54%), Gaps = 4/283 (1%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           ++ P+ + +N VI+  C+ G +  A E+ + M +    PD+ TY +++ G C   R+++A
Sbjct: 183 NISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 242

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L   M+  GC  + V ++ L++G+C+ G M R  +L+  M  +G  C PN VTY ++I
Sbjct: 243 VLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKG--CVPNEVTYNTII 300

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C KG + +A+ +LDRM A  C PN VT  TLI G   +G   +   L+  +   G  
Sbjct: 301 NGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHH 360

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
           ++   YS+L+  L + ++ +EA  L+ KM+  G +P+ +  S +I  LC  G++ E   +
Sbjct: 361 ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEI 420

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
             ++   G   + ++  +S L+ G  +  +S +A ++ + M K
Sbjct: 421 LCEMVNKG--CTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAK 461



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 190/398 (47%), Gaps = 23/398 (5%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAY----------------KEEGCVVSVK 130
           +S  +  ++++  A +M   K   S    ++E Y                K E  V   K
Sbjct: 57  RSFLQSETYIFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEK 116

Query: 131 MMKVIFNLCEKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK- 188
              ++F    KA L  +A+ +  +M  EF  R     +N+V+ +  ++G    A E  + 
Sbjct: 117 NFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYEC 176

Query: 189 GMG-LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           G+G   ++ P+++++  +IK  C  G ++ A  +F+ M    C  ++  Y  L+DG+C+ 
Sbjct: 177 GVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKE 236

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             ++ A+ LL EM+ EG  C P+ VT+  +I   C KG M     ++D M   GC PN V
Sbjct: 237 DRIDEAVLLLDEMQIEG--CFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEV 294

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T +T+I G C++G LD+A  L+D++VA   V +   Y +L+  LV+  R  +   L S +
Sbjct: 295 TYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSL 354

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G   +  A S +I  L    +  E   L++ + + G   ++   ++S L+ GLCR+ 
Sbjct: 355 EERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNI--VVYSALIDGLCREG 412

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
              EA ++   M+ K           +++   K+G+ +
Sbjct: 413 KLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQ 450



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 132/268 (49%), Gaps = 18/268 (6%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+GC  ++ +   + + LC + +L +EA  +L +M      P+   Y+++I+ F + G+ 
Sbjct: 391 EKGCQPNIVVYSALIDGLCREGKL-DEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNS 449

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  + K M   +  P+ I Y  +I G C  G+L +A  ++  M   G   ++VAYS++
Sbjct: 450 QKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSM 509

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G+C  GS+E  L+L  EM  +  D  P+VVTY  +++  C +  +  A+ +L+ M   
Sbjct: 510 IHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDR 569

Query: 301 GCAPNRVTISTLIKGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
           GC P+ +T +  +     + N   +  + +D+               LVV L + +R+  
Sbjct: 570 GCNPDLITCNIFLNALREKLNPPQDGREFLDE---------------LVVRLHKRQRIVG 614

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELC 387
           A K+   ML   + P+      +I ELC
Sbjct: 615 AAKIIEVMLQKFLPPNASTWERIIPELC 642


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 212/470 (45%), Gaps = 39/470 (8%)

Query: 1   MPRFSLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDST 60
           MP+FS+ ++        N    +LH         +++ L  + N+            D+ 
Sbjct: 25  MPKFSIHQL--------NPLTISLHKPARLSPFFYFSSLPLSSNSTP----------DAQ 66

Query: 61  CVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAY 120
             + +  + F S+ Q G           SY+     + R  E     +    I  V++  
Sbjct: 67  NELSISPQIFKSRPQFG-----------SYKLGDATFYRLIENYATSREFHFIHQVLDRM 115

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII--YNNVIRLFCEKG 178
           K EG V++  +  +IF  C KA L  EA+    +M   DL     +  +N+V+ +  ++G
Sbjct: 116 KREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMAN-DLHCKQTVKSFNSVLNVIIQEG 174

Query: 179 DMIAADEL---MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           D   A +    + G       P+++TY  +IK  C  G+++ A   F+ M    C  ++ 
Sbjct: 175 DFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVF 234

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS L++G+C+   ++ A+ LL EM+ EG  C PN VT+  +I      G +  A  ++D
Sbjct: 235 TYSTLMNGLCKERRVDEAVFLLDEMQAEG--CLPNPVTFNVLIDALSKNGDLSRAAKLVD 292

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   GC PN VT +TLI G C++G LD+A  L++K+V+   V +   Y +++  LV+ +
Sbjct: 293 NMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQR 352

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R ++   +   M   G K +    S +I  L   G+      L++++ + G   +V   +
Sbjct: 353 RAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNV--VV 410

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           +   + GLCR     EA  + + ML K           +++   K GD +
Sbjct: 411 YGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQ 460



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 197/414 (47%), Gaps = 12/414 (2%)

Query: 30  SPAERFYTHL-QKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQS 88
           S A +FY H+   N    +  L T    + + C +  + R   +  +M ++         
Sbjct: 177 SYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLK----NCNPD 232

Query: 89  SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
            + +S+ M N  C+  R+ +    ++D ++A   EGC+ +     V+ +   K    + A
Sbjct: 233 VFTYSTLM-NGLCKERRVDE-AVFLLDEMQA---EGCLPNPVTFNVLIDALSKNGDLSRA 287

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             ++  M      P+ + YN +I   C KG +  A  L++ M      P+ +TY ++I G
Sbjct: 288 AKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIING 347

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
                R ED   +   M+  G  AN   YS+L+ G+ + G  E A+ L  EM ++G  C 
Sbjct: 348 LVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKG--CK 405

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           PNVV Y + I   C      EA  IL  M + G  PN  T S+L+KGF  +G+  +A  +
Sbjct: 406 PNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILV 465

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
             ++++     +  C S L+  L  + RL+EA  +++ ML  G+KPD +A S MI+ LC 
Sbjct: 466 WKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCD 525

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            G V +G  L+ +++     S  D   +++L   LCR+++   A  L   ML +
Sbjct: 526 VGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDE 579



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 134/274 (48%), Gaps = 16/274 (5%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+GC  +V +     + LC   +  +EA  +L++M      P+   Y+++++ F +KGD 
Sbjct: 401 EKGCKPNVVVYGAFIDGLCRDEK-PDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDS 459

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  + K M   D+  +++    ++ G C +GRL +A  ++  M   G   ++VAYS++
Sbjct: 460 QKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSM 519

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G+C +GS+++ L+L  EM+ +     P+VVTY  +    C +  +  A+ +L+ M   
Sbjct: 520 IKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDE 579

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GC P+ +T +  ++      N  +  +L                  LVV L++ +R   A
Sbjct: 580 GCDPDSLTCNIFLETLRERINPPQDGRLF--------------LDELVVRLLKRERKLSA 625

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            ++  +ML   + P+    S +I+  C   ++ E
Sbjct: 626 LRIVEEMLLRFLPPEPSTWSRVIQRTCKPKRIRE 659


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 145/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C +G+LD A++
Sbjct: 279 SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++   +      Y++L+  L R  +  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 339 HRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G + SV
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSV 422



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 130/269 (48%), Gaps = 5/269 (1%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+Y+ L++G  RLG ++   
Sbjct: 138 YPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 197

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  + +A  + D M   G  PN VT +TLI 
Sbjct: 198 RLKSAMLASG--VQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLID 255

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++         Y++L+  L +   LK+A  L  +M   G+KP
Sbjct: 256 GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKP 315

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  + +I   C  G +   F   + +  I   + +D  +++ L+ GLCR+  SV+A K
Sbjct: 316 DKITYTTLIDGCCKDGDLDTAFEHRKRM--IQENTRLDDVVYTALISGLCREGQSVDAEK 373

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           + R ML   +         I+    K GD
Sbjct: 374 MLREMLSVGLKPDARTYTMIINEFCKKGD 402



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 113/215 (52%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M    L P+++ +  +I   C+ G +  A E+ K M   
Sbjct: 218 LINGLCKESKI-DDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L+ A  L   M   G   + + Y+ L+DG C+ G ++ A
Sbjct: 277 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTA 336

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E    M +E  +   + V YT++I   C +G   +A  +L  M ++G  P+  T + +I
Sbjct: 337 FEHRKRMIQE--NTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMII 394

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G V S   Y+ L+
Sbjct: 395 NEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 110/238 (46%), Gaps = 4/238 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+  +  +I  +  +G L DA   +++ + H           +L+ + +L   +      
Sbjct: 71  DLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ + G   S  +  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 131 EEILECGYPAS--LYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+LDE ++L   ++A G       YS L+  L +  ++ +A +LF +ML  G+ P+ +
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSV 248

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQAHHL 304



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC + + + +A  +LR+M    L+PD   Y  +I  FC+KGD+    +L+K M   
Sbjct: 358 LISGLCREGQ-SVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRD 416

Query: 194 DLYPDIITYVSMIKG 208
              P ++TY  ++ G
Sbjct: 417 GHVPSVVTYNVLMNG 431


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 160/310 (51%), Gaps = 8/310 (2%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           K+I NLC + R  ++A  VLR         D   YN ++  +C  G + AA  L   +G 
Sbjct: 80  KLIRNLCRRGR-TSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRL---IGS 135

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           + + PD  TY  +I+  C+ GR+ DA  L   M R GC  N+V Y+ LL+ +C+    E+
Sbjct: 136 MPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQ 195

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+ +L EM  +G  C+PN+VTY  +I   C +G + +A  +L+R+ + GC P+ V+ +TL
Sbjct: 196 AMAVLDEMRAKG--CTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTL 253

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +KG C     D+  +L  +++    + +   +  L+    R   ++ A ++  +M     
Sbjct: 254 LKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHEC 313

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
             +   C+++I  +C  G+V + F    ++   G   + D+  ++ +L GLCR     +A
Sbjct: 314 ATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYG--CNPDTISYTTVLKGLCRAERWNDA 371

Query: 433 AKLARFMLKK 442
            +L + M++ 
Sbjct: 372 KELLKEMVRN 381



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 171/350 (48%), Gaps = 9/350 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I V++   E  C  +  +  ++ N +C++ R+ ++A   L  M  +   PDTI Y  V++
Sbjct: 302 IQVLQQMTEHECATNTTLCNIVINSICKQGRV-DDAFKFLNNMGSYGCNPDTISYTTVLK 360

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C       A EL+K M   +  P+ +T+ + I   C  G +E A  L + M+ HGC  
Sbjct: 361 GLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTV 420

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
            +V Y+AL++G C  G ++ ALEL   M      C PN +TYT+++   C    +  A  
Sbjct: 421 GVVTYNALVNGFCVQGHIDSALELFRSMP-----CKPNTITYTTLLTGLCNAERLDAAAE 475

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           ++  M    C PN VT + L+  FC +G LDEA +L+++++  G   +   Y++L   + 
Sbjct: 476 LVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGIT 535

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +    ++A +L   +++ GV PD +  S +I  L    +V E   ++   + IG      
Sbjct: 536 KDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPK-- 593

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           + +++ +LLGLC+++    A     +M+             ++E L + G
Sbjct: 594 ALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREG 643



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 155/302 (51%), Gaps = 5/302 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ R+A +A+ +L  M     +P+ + Y  ++   C+      A  ++  M      P
Sbjct: 152 LCDRGRVA-DALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTP 210

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +I+TY  +I G C  GR++DA  L   +  +GC  + V+Y+ LL G+C     +   EL 
Sbjct: 211 NIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELF 270

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM ++  +C PN VT+  +I+ FC  GM++ A+ +L +M    CA N    + +I   C
Sbjct: 271 AEMMEK--NCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSIC 328

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +G +D+A++ ++ + + G       Y++++  L R +R  +A++L  +M+ +   P+ +
Sbjct: 329 KQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEV 388

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             +  I  LC  G + +   L E +++ G   +V    ++ L+ G C + H   A +L R
Sbjct: 389 TFNTFICILCQKGLIEQAIMLIEQMQEHG--CTVGVVTYNALVNGFCVQGHIDSALELFR 446

Query: 438 FM 439
            M
Sbjct: 447 SM 448



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 140/273 (51%), Gaps = 11/273 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+   I+Q     I ++E  +E GC V V     + N  C +  + + A+ + R MP   
Sbjct: 398 CQKGLIEQ----AIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHI-DSALELFRSMP--- 449

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            +P+TI Y  ++   C    + AA EL+  M   D  P+++T+  ++  FC  G L++A 
Sbjct: 450 CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAI 509

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L + M  HGC  NL+ Y+ L DGI +  S E ALELL  +  +G   SP+V+T++S+I 
Sbjct: 510 ELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKG--VSPDVITFSSIIG 567

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
           I   +  ++EA+ +    + +G  P  +  + ++ G C    +D A   +  +V+ G + 
Sbjct: 568 ILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMP 627

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +   Y  L+  L R   LKEA+ L S + + GV
Sbjct: 628 NESTYIILIEGLAREGLLKEAQDLLSMLCSRGV 660



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD  +   +IR  C +G    A  +++         D+  Y +++ G+C  G L+ A  L
Sbjct: 73  PDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRL 132

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M     A +   Y+ L+  +C  G +  AL LL +M + G  C PNVVTYT +++  
Sbjct: 133 IGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRG--CQPNVVTYTVLLEAM 187

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C     ++A+ +LD M A GC PN VT + +I G C EG +D+A  L++++ + G     
Sbjct: 188 CKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDT 247

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
             Y++L+  L  +KR  + E+LF++M+     P+ +   ++IR  C GG V
Sbjct: 248 VSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMV 298



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 158/342 (46%), Gaps = 11/342 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+    S++ D++      GC  +V    V+     K     +AM VL +M     
Sbjct: 153 CDRGRVADALSLLDDMLR----RGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGC 208

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + YN +I   C +G +  A +L+  +      PD ++Y +++KG C + R +D   
Sbjct: 209 TPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEE 268

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M    C  N V +  L+   CR G +ERA+++L +M +   +C+ N      VI  
Sbjct: 269 LFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEH--ECATNTTLCNIVINS 326

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G + +A   L+ M + GC P+ ++ +T++KG C     ++A +L+ ++V      +
Sbjct: 327 ICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPN 386

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              +++ +  L +   +++A  L  +M   G     +  + ++   C+ G +     L+ 
Sbjct: 387 EVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFR 446

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +         ++  ++ LL GLC       AA+L   ML +
Sbjct: 447 SMP-----CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHR 483



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 134/268 (50%), Gaps = 11/268 (4%)

Query: 133 KVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V FN     LC+K  L  +A+ ++ +M E       + YN ++  FC +G + +A EL 
Sbjct: 387 EVTFNTFICILCQKG-LIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELF 445

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M      P+ ITY +++ G CNA RL+ A  L   M    C  N+V ++ L++  C+ 
Sbjct: 446 RSM---PCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQK 502

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ++ A+EL+ +M + G  C+PN++TY ++          ++AL +L  + + G +P+ +
Sbjct: 503 GFLDEAIELVEQMMEHG--CTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVI 560

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S++I     E  ++EA Q+       G       Y+ +++ L +   +  A    + M
Sbjct: 561 TFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYM 620

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEG 395
           +++G  P+     ++I  L   G + E 
Sbjct: 621 VSNGCMPNESTYIILIEGLAREGLLKEA 648



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
           L    R +EL    + E    +P+V   T +I+  C +G   +A  +L   E  G   + 
Sbjct: 55  LAGAARLVELSASRDGE----APDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDV 110

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
              +TL+ G+C  G+LD A +LI  +       +   Y+ L+  L    R+ +A  L   
Sbjct: 111 FAYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYT---YTPLIRVLCDRGRVADALSLLDD 167

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           ML  G +P+ +  +V++  +C      +   + +++   G   ++ +  ++V++ G+CR+
Sbjct: 168 MLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVT--YNVIINGMCRE 225

Query: 427 NHSVEAAKL 435
               +A  L
Sbjct: 226 GRVDDARDL 234


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 170/322 (52%), Gaps = 8/322 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +V+   E GC   +     I N   ++   + A  +LRKM E +++ D   Y+ +I   C
Sbjct: 180 LVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLC 239

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G + AA  L K M    +   ++TY S+++G C AG+  D   L K M       N++
Sbjct: 240 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 299

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ LLD   + G ++ A EL  EM   G   SPN++TY +++  +C +  + EA  +LD
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRG--ISPNIITYNTLMDGYCMQNRLSEANNMLD 357

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M    C+P+ VT ++LIKG+C+   +D+  ++   +   G V++   YS LV    ++ 
Sbjct: 358 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSG 417

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           ++K AE+LF +M++ GV PD +   +++  LC  G++ +   ++ED++K    S +D  I
Sbjct: 418 KIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK----SKMDLGI 473

Query: 416 --HSVLLLGLCRKNHSVEAAKL 435
             ++ ++ G+C+     +A  L
Sbjct: 474 VMYTTIIEGMCKGGKVEDAWNL 495



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 174/337 (51%), Gaps = 5/337 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC + +++ +A+ ++ +M E   +PD + YN+++   C  GD   A ++++ M   
Sbjct: 164 LINGLCLEGKVS-KAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEER 222

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++  D+ TY ++I   C  G ++ A  LFK M+  G  +++V Y++L+ G+C+ G     
Sbjct: 223 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDG 282

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL +M     +  PNV+T+  ++ +F  +G ++EA  +   M   G +PN +T +TL+
Sbjct: 283 ALLLKDMVSR--EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLM 340

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C++  L EA  ++D +V          ++SL+      KR+ +  K+F  +   G+ 
Sbjct: 341 DGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLV 400

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            + +  S++++  C  G++     L++++   G L  V +  + +LL GLC      +A 
Sbjct: 401 ANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMT--YGILLDGLCDNGKLEKAL 458

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           ++   + K ++ L       I+E + K G  E   NL
Sbjct: 459 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNL 495



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 165/331 (49%), Gaps = 4/331 (1%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           + S+  D++   +E      V     I +   +    + A+ + ++M    ++   + YN
Sbjct: 208 DTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 267

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           +++R  C+ G       L+K M   ++ P++IT+  ++  F   G+L++A  L+K M   
Sbjct: 268 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITR 327

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G + N++ Y+ L+DG C    +  A  +L  M +    CSP++VT+TS+I+ +C    + 
Sbjct: 328 GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN--KCSPDIVTFTSLIKGYCMVKRVD 385

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           + + +   +   G   N VT S L++GFC  G +  A +L  ++V+ G +     Y  L+
Sbjct: 386 DGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 445

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L    +L++A ++F  +  S +    +  + +I  +C GG+V + + L+  +   G  
Sbjct: 446 DGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK 505

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            +V +  ++V++ GLC+K    EA  L R M
Sbjct: 506 PNVMT--YTVMISGLCKKGSLSEANILLRKM 534



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 140/288 (48%), Gaps = 2/288 (0%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V +V    V+ ++  K     EA  + ++M    + P+ I YN ++  +C +  +  A+ 
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           ++  M      PDI+T+ S+IKG+C   R++D   +F+ + + G  AN V YS L+ G C
Sbjct: 355 MLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC 414

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G ++ A EL  EM   G    P+V+TY  ++   C  G +++AL I + ++       
Sbjct: 415 QSGKIKLAEELFQEMVSHG--VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  +T+I+G C  G +++A+ L   +   G   +   Y+ ++  L +   L EA  L  
Sbjct: 473 IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLR 532

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           KM   G  P+    + +IR     G +     L E+++  GF +   S
Sbjct: 533 KMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASS 580



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 138/258 (53%), Gaps = 4/258 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C + RL+ EA  +L  M      PD + + ++I+ +C    +    ++ + +    L  +
Sbjct: 344 CMQNRLS-EANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVAN 402

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            +TY  +++GFC +G+++ A  LF+ M  HG   +++ Y  LLDG+C  G +E+ALE+  
Sbjct: 403 AVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFE 462

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +++K   D    +V YT++I+  C  G +++A  +   +   G  PN +T + +I G C 
Sbjct: 463 DLQKSKMDLG--IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 520

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           +G+L EA  L+ K+   G+  +   Y++L+   +R   L  + KL  +M + G   D  +
Sbjct: 521 KGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASS 580

Query: 379 CSVMIRELCLGGQVLEGF 396
             ++I ++ L G++ + F
Sbjct: 581 IKMVI-DMLLSGELDKSF 597



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 127/225 (56%), Gaps = 6/225 (2%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            ++ M V R + +  L  + + Y+ +++ FC+ G +  A+EL + M    + PD++TY  
Sbjct: 384 VDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGI 443

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           ++ G C+ G+LE A  +F+ +++      +V Y+ +++G+C+ G +E A  L   +  +G
Sbjct: 444 LLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKG 503

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PNV+TYT +I   C KG + EA  +L +ME  G APN  T +TLI+    +G+L  
Sbjct: 504 --VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTA 561

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           + +LI+++ + G  S+      +V++++ +    E +K F  ML+
Sbjct: 562 SAKLIEEMKSCG-FSADASSIKMVIDMLLS---GELDKSFLDMLS 602



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 4/229 (1%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           +DA  LF+ M R      LV +S     I R       L+   ++E  G   + N+ T  
Sbjct: 70  DDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNG--IAHNIYTLN 127

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I  FC       A  +L ++  LG  P+  T +TLI G C+EG + +A  L+D++V  
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVEN 187

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G       Y+S+V  + R+     A  +  KM    VK D    S +I  LC  G +   
Sbjct: 188 GCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             L++++E  G  SSV +  ++ L+ GLC+     + A L + M+ + I
Sbjct: 248 ISLFKEMETKGIKSSVVT--YNSLVRGLCKAGKWNDGALLLKDMVSREI 294



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 113/222 (50%), Gaps = 4/222 (1%)

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           K ++ +G A N+   + +++  CR      A  +LG++ K G +  P+  T+ ++I   C
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYE--PDTTTFNTLINGLC 169

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            +G + +A+ ++DRM   GC P+ VT ++++ G C  G+   A+ ++ K+      +   
Sbjct: 170 LEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVF 229

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            YS+++  L R   +  A  LF +M   G+K   +  + ++R LC  G+  +G  L +D+
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
                + +V +   +VLL    ++    EA +L + M+ + I
Sbjct: 290 VSREIVPNVIT--FNVLLDVFVKEGKLQEANELYKEMITRGI 329


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 160/311 (51%), Gaps = 5/311 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LC K RL NEA+ +   M    + P  + YN++I   C  G    A  L K M   
Sbjct: 250 IIDSLC-KNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEW 308

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ PD++T+  ++   C  G + +A  +F  M +     ++V YS+L+ G+C+    + +
Sbjct: 309 NMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKES 368

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL EM     +  P+VVT++  + +FC KGM+ EA  I++ M   G  PN VT ++L+
Sbjct: 369 STLLNEMLSR--NIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLM 426

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C+   +DEA ++ D +V  G       Y+ L+    +++R+ EA++LF +M   G+ 
Sbjct: 427 DGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLT 486

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  + +I  LC  G+      L++ +   G     D   +S LL G C+  H  EA 
Sbjct: 487 PNSITHTTLISGLCQAGRPYAAKELFKKMGSHG--CPPDLITYSTLLSGFCKHGHLDEAL 544

Query: 434 KLARFMLKKRI 444
            L   + K ++
Sbjct: 545 ALFEALKKSQL 555



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 157/302 (51%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I+ +C   +   +A  + ++M E++++PD + ++ ++   C++G ++ A  +   M  I
Sbjct: 285 LIYGMCNSGQW-KQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQI 343

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PDI+TY S+I G C +   +++  L   M       ++V +S  +D  C+ G +  A
Sbjct: 344 AMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEA 403

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             ++  M + G    PNVVTY S++  +C    M EA  + D M   GCAP+ ++ + LI
Sbjct: 404 QSIINLMIERG--LRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILI 461

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           KG+C    +DEA QL D++   G   +   +++L+  L +  R   A++LF KM + G  
Sbjct: 462 KGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCP 521

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  S ++   C  G + E   L+E ++K       +  I  +LL G+C+     +A 
Sbjct: 522 PDLITYSTLLSGFCKHGHLDEALALFEALKKSQL--KPNHVICKILLGGMCKAGKLEDAK 579

Query: 434 KL 435
           +L
Sbjct: 580 EL 581



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 138/247 (55%), Gaps = 3/247 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  +C K+ L  E+  +L +M   ++RPD + ++  + +FC+KG +  A  ++ 
Sbjct: 350 VTYSSLIHGVC-KSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIIN 408

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    L P+++TY S++ G+C   ++++A  +F +M   GCA ++++Y+ L+ G C+  
Sbjct: 409 LMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSE 468

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ A +L  EM  +G   +PN +T+T++I   C  G    A  +  +M + GC P+ +T
Sbjct: 469 RIDEAKQLFDEMSHKG--LTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLIT 526

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            STL+ GFC  G+LDEA  L + +       +      L+  + +  +L++A++LFS + 
Sbjct: 527 YSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLS 586

Query: 369 ASGVKPD 375
              ++PD
Sbjct: 587 IEELQPD 593



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 149/330 (45%), Gaps = 7/330 (2%)

Query: 116 VVEAYKEE---GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           VV  Y++    G   SV  + ++ N      L      VL K+ +   +P  I +N +I 
Sbjct: 123 VVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLIN 182

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C +G ++ A E +  +      P + T+  ++ G C  G+   A    K M    C  
Sbjct: 183 GLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEP 242

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
            +V+YS ++D +C+   +  A++L   M   G   SP VVTY S+I   C  G  K+A  
Sbjct: 243 EVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIG--ISPTVVTYNSLIYGMCNSGQWKQASI 300

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M      P+ VT S L+   C EG + EA  +  K++          YSSL+  + 
Sbjct: 301 LFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVC 360

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           ++   KE+  L ++ML+  ++PD +  S+ +   C  G V E   +   + + G   +V 
Sbjct: 361 KSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVV 420

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +  ++ L+ G C  +   EA K+   M+ K
Sbjct: 421 T--YNSLMDGYCLHSQMDEARKVFDIMVNK 448



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 43/250 (17%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P IIT+ ++I G C  GR+ +A      +   G    +  ++ +++G+C++G    A+  
Sbjct: 172 PSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVW 231

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           + +M +   DC P VV+Y+ +I   C   ++ EA+ +   M ++G +P  VT ++LI G 
Sbjct: 232 MKKMVEL--DCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGM 289

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G                                   + K+A  LF +ML   +KPD 
Sbjct: 290 CNSG-----------------------------------QWKQASILFKEMLEWNMKPDV 314

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAK 434
           +  S+++  LC  G VLE   ++  + +I    +++ DI  +S L+ G+C+ +   E++ 
Sbjct: 315 VTFSILVDALCKEGVVLEALSVFGKMIQI----AMEPDIVTYSSLIHGVCKSSLWKESST 370

Query: 435 LARFMLKKRI 444
           L   ML + I
Sbjct: 371 LLNEMLSRNI 380



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 2/156 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V +    +GC   V    ++     K+   +EA  +  +M    L P++I +  +I   C
Sbjct: 441 VFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLC 500

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G   AA EL K MG     PD+ITY +++ GFC  G L++A  LF+ +K+     N V
Sbjct: 501 QAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHV 560

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
               LL G+C+ G +E A EL   +  E  +  P+V
Sbjct: 561 ICKILLGGMCKAGKLEDAKELFSSLSIE--ELQPDV 594



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 10/249 (4%)

Query: 206 IKGFCNAG---RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
           ++  C  G     +DA   F  M        +  ++ LL  + R+   +  + +  +ME 
Sbjct: 73  VRDKCKGGSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEF 132

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G  CS  V T T +I   C   ++     +L ++  LG  P+ +T +TLI G C+EG +
Sbjct: 133 FGVSCS--VYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRI 190

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            EA + +D +++ G   +   ++ +V  L +  +   A     KM+    +P+ ++ S++
Sbjct: 191 VEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSII 250

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           I  LC    V E   L+  +  IG   +V +  ++ L+ G+C      +A+ L + ML+ 
Sbjct: 251 IDSLCKNRLVNEAVDLFYHMRSIGISPTVVT--YNSLIYGMCNSGQWKQASILFKEMLE- 307

Query: 443 RIWLQGPYV 451
             W   P V
Sbjct: 308 --WNMKPDV 314


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 158/310 (50%), Gaps = 8/310 (2%)

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           +M+ +  L E A   N    V  +M    +R   + +N +I   C  GD+  A+ L + M
Sbjct: 122 LMRDLVRLGELASAQN----VFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRM 177

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + PD+ TY ++I+G C  GR+EDA G+F+ M   G   N V ++ L+D  C+ G  
Sbjct: 178 SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDA 237

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E  LEL  EM + G    P+ VTY +++   C    +K A GI+  M + G  P+ VT +
Sbjct: 238 ETMLELHREMRERG--VRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYT 295

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           TLI G+C E  LD A ++   +VA G       Y++L+  L +  R  +AE++  +M+ +
Sbjct: 296 TLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEA 355

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G++PD    +++I   C  G V  G  L ++++  G    V +  ++V++ G C+     
Sbjct: 356 GLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVT--YNVIMNGFCKLGQMK 413

Query: 431 EAAKLARFML 440
            A  L   M+
Sbjct: 414 NADMLLNAMI 423



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 125/252 (49%), Gaps = 5/252 (1%)

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
           K +   ++++    +E G          I N   +AR    A  ++ +M    LRPDT+ 
Sbjct: 234 KGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVT 293

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           Y  +I  +C++ ++  A E+ + M    +  D +TY ++I G   AGR  DA  +   M 
Sbjct: 294 YTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMM 353

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G   +   Y+ ++D  CR G ++  L LL EM+ +G    P VVTY  ++  FC  G 
Sbjct: 354 EAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGR--KPGVVTYNVIMNGFCKLGQ 411

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           MK A  +L+ M  +G +P+ +T + L+ G C  G + +  +L     A G+V   G Y+S
Sbjct: 412 MKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKS---AKGTVPDLGVYTS 468

Query: 347 LVVELVRTKRLK 358
           +V E+V+ K  K
Sbjct: 469 IVGEIVKKKTTK 480


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 163/313 (52%), Gaps = 8/313 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++  L   A+ ++ +M E   +PD   YN +I   C+ G +  A+ L+      
Sbjct: 476 LIKGLCQQG-LILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITK 534

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PDI TY +++ G+C   +L+ A  L   M   G   +++ Y+ LL+G+C+    E  
Sbjct: 535 GCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEV 594

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +E+   M ++G  C+PN++TY ++I+  C    + EA+ +L  M++ G  P+ V+  TLI
Sbjct: 595 MEIFKAMTEKG--CAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLI 652

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
            GFC  G+LD AY L   +     VS +   Y+ ++        +K A +LFS+M  +G 
Sbjct: 653 TGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGC 712

Query: 373 KPDGLACSVMIRELCLGGQVLEGF-CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
            PD     V+I   C  G V +G+  L E+IEK GF+ S+ +     +L  LC ++   E
Sbjct: 713 DPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEK-GFIPSLTT--FGRVLNCLCVEHKVQE 769

Query: 432 AAKLARFMLKKRI 444
           A  +   M++K I
Sbjct: 770 AVGIIHLMVQKDI 782



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 156/309 (50%), Gaps = 5/309 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC K+R+  EA   L KM      P+   YN++I  +C+KG ++ A+ ++K     
Sbjct: 371 VICGLCRKSRVV-EAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFK 429

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  TY S++ GFC  G  + A  +FK     G   +++ Y+ L+ G+C+ G +  A
Sbjct: 430 GFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPA 489

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+L+ EM ++G  C P++ TY  +I   C  G + +A  ++      GC P+  T +TL+
Sbjct: 490 LQLMNEMAEKG--CKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLV 547

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C +  LD A +L++++ + G       Y++L+  L +T + +E  ++F  M   G  
Sbjct: 548 DGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCA 607

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  + +I  LC   +V E   L  +++  G    V S     L+ G C+      A 
Sbjct: 608 PNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVS--FGTLITGFCKVGDLDGAY 665

Query: 434 KLARFMLKK 442
            L R M K+
Sbjct: 666 GLFRGMEKQ 674



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+    +M  F+  P    YN ++ +  E G    A ++   M    +  D+ TY   I
Sbjct: 173 EAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRI 232

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           K FC  GR   A  L + M   GC +N VAY  ++ G    G  +RA EL  EM     +
Sbjct: 233 KSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEML----E 288

Query: 267 CS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           C   P+V T+  ++   C KG + E+  + D++   G  PN  T +  I+G C EG+LD 
Sbjct: 289 CCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDR 348

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A +L+  V   G       Y++++  L R  R+ EAE+   KM+  G +P+    + +I 
Sbjct: 349 AVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIID 408

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
             C  G V++   + +D    GF    D   +  L+ G C+     +A
Sbjct: 409 GYCKKGMVVDANRILKDAVFKGF--KPDEFTYCSLVNGFCQDGDPDQA 454



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 154/331 (46%), Gaps = 8/331 (2%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +LR MP      + + Y  V+  F E GD   A EL   M    L PD+ T+  ++ 
Sbjct: 244 ALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVH 303

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             C  G + ++  LF  + + G   NL  ++  + G+C+ GS++RA+ LLG + +EG   
Sbjct: 304 ALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREG--L 361

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+VVTY +VI   C K  + EA   L +M   G  PN  T +++I G+C +G + +A +
Sbjct: 362 RPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANR 421

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           ++   V  G       Y SLV    +     +A  +F   L  G++P  +  + +I+ LC
Sbjct: 422 ILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLC 481

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----R 443
             G +L    L  ++ + G     D   +++++ GLC+     +A  L    + K     
Sbjct: 482 QQGLILPALQLMNEMAEKG--CKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPD 539

Query: 444 IWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
           I+     VD     LK     EL+  +   G
Sbjct: 540 IFTYNTLVDGYCRQLKLDSAIELVNRMWSQG 570



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 7/283 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           + + N  C+M  +     +I D +     +GC+  +     + +  C + +L + A+ ++
Sbjct: 509 NLIINGLCKMGCLSDANHLIGDAIT----KGCIPDIFTYNTLVDGYCRQLKL-DSAIELV 563

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
            +M    + PD I YN ++   C+        E+ K M      P+IITY ++I+  CN+
Sbjct: 564 NRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNS 623

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            ++ +A  L   MK  G   ++V++  L+ G C++G ++ A  L   MEK+  D S    
Sbjct: 624 KKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQY-DVSHTTA 682

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TY  +I  F  +  MK AL +   M+  GC P+  T   LI GFC  GN+++ Y+ + + 
Sbjct: 683 TYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLEN 742

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +  G + S   +  ++  L    +++EA  +   M+   + PD
Sbjct: 743 IEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPD 785



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 4/231 (1%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           YV  ++ +   G++++A   F+ M    C  ++ +Y+A+++ +   G   +A ++   M+
Sbjct: 158 YVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMK 217

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            +      +V TYT  I+ FC  G    AL +L  M  LGC  N V   T++ GF   G+
Sbjct: 218 DK--KVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGD 275

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
            D A +L D+++          ++ LV  L +   + E+E+LF K+L  GV P+    ++
Sbjct: 276 NDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNI 335

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            I+ LC  G +     L   + + G    V +  ++ ++ GLCRK+  VEA
Sbjct: 336 FIQGLCKEGSLDRAVRLLGCVSREGLRPDVVT--YNTVICGLCRKSRVVEA 384


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 212/470 (45%), Gaps = 39/470 (8%)

Query: 1   MPRFSLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDST 60
           MP+FS+ ++        N    +LH         +++ L  + N+            D+ 
Sbjct: 1   MPKFSIHQL--------NPLTISLHKPARLSPFFYFSSLPLSSNSTP----------DAQ 42

Query: 61  CVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAY 120
             + +  + F S+ Q G           SY+     + R  E     +    I  V++  
Sbjct: 43  NELSISPQIFKSRPQFG-----------SYKLGDATFYRLIENYATSREFHFIHQVLDRM 91

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII--YNNVIRLFCEKG 178
           K EG V++  +  +IF  C KA L  EA+    +M   DL     +  +N+V+ +  ++G
Sbjct: 92  KREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMAN-DLHCKQTVKSFNSVLNVIIQEG 150

Query: 179 DMIAADEL---MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           D   A +    + G       P+++TY  +IK  C  G+++ A   F+ M    C  ++ 
Sbjct: 151 DFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVF 210

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS L++G+C+   ++ A+ LL EM+ EG  C PN VT+  +I      G +  A  ++D
Sbjct: 211 TYSTLMNGLCKERRVDEAVFLLDEMQAEG--CLPNPVTFNVLIDALSKNGDLSRAAKLVD 268

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   GC PN VT +TLI G C++G LD+A  L++K+V+   V +   Y +++  LV+ +
Sbjct: 269 NMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQR 328

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R ++   +   M   G K +    S +I  L   G+      L++++ + G   +V   +
Sbjct: 329 RAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNV--VV 386

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           +   + GLCR     EA  + + ML K           +++   K GD +
Sbjct: 387 YGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQ 436



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 196/412 (47%), Gaps = 12/412 (2%)

Query: 30  SPAERFYTHL-QKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQS 88
           S A +FY H+   N    +  L T    + + C +  + R   +  +M ++         
Sbjct: 153 SYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLK----NCNPD 208

Query: 89  SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
            + +S+ M N  C+  R+ +    ++D ++A   EGC+ +     V+ +   K    + A
Sbjct: 209 VFTYSTLM-NGLCKERRVDE-AVFLLDEMQA---EGCLPNPVTFNVLIDALSKNGDLSRA 263

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             ++  M      P+ + YN +I   C KG +  A  L++ M      P+ +TY ++I G
Sbjct: 264 AKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIING 323

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
                R ED   +   M+  G  AN   YS+L+ G+ + G  E A+ L  EM ++G  C 
Sbjct: 324 LVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKG--CK 381

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           PNVV Y + I   C      EA  IL  M + G  PN  T S+L+KGF  +G+  +A  +
Sbjct: 382 PNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILV 441

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
             ++++     +  C S L+  L  + RL+EA  +++ ML  G+KPD +A S MI+ LC 
Sbjct: 442 WKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCD 501

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            G V +G  L+ +++     S  D   +++L   LCR+++   A  L   ML
Sbjct: 502 VGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSML 553



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 134/274 (48%), Gaps = 16/274 (5%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+GC  +V +     + LC   +  +EA  +L++M      P+   Y+++++ F +KGD 
Sbjct: 377 EKGCKPNVVVYGAFIDGLCRDEK-PDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDS 435

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  + K M   D+  +++    ++ G C +GRL +A  ++  M   G   ++VAYS++
Sbjct: 436 QKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSM 495

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G+C +GS+++ L+L  EM+ +     P+VVTY  +    C +  +  A+ +L+ M   
Sbjct: 496 IKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDE 555

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GC P+ +T +  ++      N  +  +L                  LVV L++ +R   A
Sbjct: 556 GCDPDSLTCNIFLETLRERINPPQDGRLF--------------LDELVVRLLKRERKLSA 601

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            ++  +ML   + P+    S +I+  C   ++ E
Sbjct: 602 LRIVEEMLLRFLPPEPSTWSRVIQRTCKPKRIRE 635


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 191/397 (48%), Gaps = 50/397 (12%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARL--ANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           +V+    E GC   ++M   I + +C++  L  ANE   +L +MP + L+P+ + YN V+
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANE---ILNRMPSYGLKPNVVCYNTVL 328

Query: 172 RLFCEKGDMIAADELMKGM----------------------GLID-------------LY 196
           +  C       A+EL+  M                      GL+D               
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCM 388

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+ITY ++I GFC  G +++A  L K M   GC  N V+Y+ +L G+C  G    A EL
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           + +M ++G  C PN VT+ ++I   C KG++++A+ +L +M   GC+P+ ++ ST+I G 
Sbjct: 449 MSQMIQQG--CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 506

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
              G  +EA +L++ +V  G   +   YSS+   L R  R+ +  ++F  +  + ++ D 
Sbjct: 507 GKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDA 566

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL- 435
           +  + +I  LC   +       +  +   G +   +   +++L+ GL  +  + EA +L 
Sbjct: 567 VLYNAVISSLCKRWETDRAIDFFAYMVSNGCMP--NESTYTMLIKGLASEGLAKEAQELL 624

Query: 436 ----ARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
               +R  L+K +       +   E+ K+  +E L +
Sbjct: 625 SELCSRGALRKHLMRHFGISNCTQENGKQKCEENLTS 661



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 172/365 (47%), Gaps = 37/365 (10%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V+EA   +GC +      ++ N +CE+    +EA+ +LRK+  F    D + YN V++
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQG-CVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C        +ELM  M  +D  P+I+T+ ++I   C  G  E    +   M  HGC  
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG---------------------------- 264
           ++  Y+ ++DGIC+ G +E A E+L  M   G                            
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELL 344

Query: 265 -----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
                 DC  + VT+  ++  FC  G++   + +L++M + GC P+ +T +T+I GFC E
Sbjct: 345 SEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE 404

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +DEA  L+  + + G   +   Y+ ++  L    R  +AE+L S+M+  G  P+ +  
Sbjct: 405 GLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTF 464

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + +I  LC  G V +   L + +   G   S D   +S ++ GL +   + EA +L   M
Sbjct: 465 NTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTEEALELLNVM 522

Query: 440 LKKRI 444
           + K I
Sbjct: 523 VNKGI 527



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 163/353 (46%), Gaps = 7/353 (1%)

Query: 113 IIDVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           I D +E   E   +GC     M  VI     ++     ++ VL  M       DT   N 
Sbjct: 127 IADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNL 186

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           V+   CE+G +  A  L++ +       DI++Y +++KG C A R  D   L   M R  
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           CA N+V ++ L+  +CR G  ER  E+L +M + G  C+P++  Y ++I   C +G ++ 
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHG--CTPDIRMYATIIDGICKEGHLEV 304

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  IL+RM + G  PN V  +T++KG C      EA +L+ ++           ++ LV 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
              +   +    +L  +ML+ G  PD +  + +I   C  G + E   L + +   G   
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +  S  ++++L GLC     V+A +L   M+++         + ++  L K G
Sbjct: 425 NTVS--YTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 2/259 (0%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +I+++E     GC+  V     + N   K  L +EA+ +L+ M     +P+T+ Y  V++
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G  + A+ELM  M      P+ +T+ ++I   C  G +E A  L K M  +GC+ 
Sbjct: 435 GLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 494

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L++YS ++DG+ + G  E ALELL  M  +G   SPN + Y+S+      +G + + + 
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKG--ISPNTIIYSSIACALSREGRVNKVIQ 552

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D ++      + V  + +I   C     D A      +V+ G + +   Y+ L+  L 
Sbjct: 553 MFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLA 612

Query: 353 RTKRLKEAEKLFSKMLASG 371
                KEA++L S++ + G
Sbjct: 613 SEGLAKEAQELLSELCSRG 631



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 138/309 (44%), Gaps = 20/309 (6%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + YN ++  +C  G + AA  L      + + P+  T+  +++G C  GR+ DA  +   
Sbjct: 80  VAYNAMVAGYCRAGQLAAARRLAA---AVPVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   GCA     Y  +L+  CR G    ++ +L  M  +G  C+ +      V+   C +
Sbjct: 137 MSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG--CTLDTGNCNLVLNAICEQ 194

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + EA+G+L ++   GC  + V+ + ++KG C+     +  +L+D++V      +   +
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++L+  L R    +   ++ ++M   G  PD    + +I  +C  G +     +   +  
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPS 314

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK-------------RIWLQGPYV 451
            G   +V    ++ +L GLC      EA +L   M +K               + Q   V
Sbjct: 315 YGLKPNVVC--YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 452 DKIVEHLKK 460
           D+++E L++
Sbjct: 373 DRVIELLEQ 381



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 55/265 (20%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++I+  C+AGR  +A    + +   G AA +VAY+A++ G CR G +  A  L   +   
Sbjct: 52  ALIRSLCSAGRTAEA---ARALADAGDAAGVVAYNAMVAGYCRAGQLAAARRLAAAVP-- 106

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP------------------- 304
                PN  T+  V++  C +G + +AL +LD M   GCAP                   
Sbjct: 107 ---VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFR 163

Query: 305 NRVTI----------------STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           N V +                + ++   C +G +DEA  L+ K+   G  +    Y++++
Sbjct: 164 NSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVL 223

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI-EKIGF 407
             L   KR  + E+L  +M+     P+ +  + +I  LC  G       L+E + E +  
Sbjct: 224 KGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG-------LFERVHEVLAQ 276

Query: 408 LS----SVDSDIHSVLLLGLCRKNH 428
           +S    + D  +++ ++ G+C++ H
Sbjct: 277 MSEHGCTPDIRMYATIIDGICKEGH 301


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 151/275 (54%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 279 SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 339 HRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G  L +++++ G + SV +  ++VL+ G
Sbjct: 399 KKGDVWKGXKLLKEMQRDGHVPSVVT--YNVLMNG 431



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 3/187 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM + ++M    L PD I YN +I   C+KGD+  A  L+ 
Sbjct: 248 VTFTTLIDGHCKNGRV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID 306

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  L PD ITY ++I G C  G L+ A    K M +     + VAY+AL+ G+C+ G
Sbjct: 307 EMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEG 366

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G    P+  TYT +I  FC KG + +   +L  M+  G  P+ VT
Sbjct: 367 RSVDAEKMLREMLSVG--LKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVT 424

Query: 309 ISTLIKG 315
            + L+ G
Sbjct: 425 YNVLMNG 431



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 146/336 (43%), Gaps = 35/336 (10%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           R D  +++ +I  + E G +  A E  +       +    T   +++        +   G
Sbjct: 69  RSDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 128

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            ++ +   G  A+L  ++ L+   C+ G +  A  +   + K G    P+VV+Y +++  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWG--LRPSVVSYNTLMNG 186

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +   G + E   +   M A G  P+  T S LI G C E  +D+A +L D+++  G V +
Sbjct: 187 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPN 246

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  +++L+    +  R+  A +++ +ML+  + PD +  + +I  LC  G + +   L +
Sbjct: 247 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID 306

Query: 401 DI-------EKIGFLSSVD-----SDI---------------------HSVLLLGLCRKN 427
           ++       +KI + + +D      D+                     ++ L+ GLC++ 
Sbjct: 307 EMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEG 366

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            SV+A K+ R ML   +         I+    K GD
Sbjct: 367 RSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGD 402


>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 199/400 (49%), Gaps = 16/400 (4%)

Query: 40  QKNPN-NIEKTLATVKAKLDSTCVIEVLHRC----FPSQSQMGIRFFIWAALQSSYRHSS 94
            +NP+ ++E +L T  + + +T V +VL RC    F +Q     RFF+WA     + HS 
Sbjct: 54  HRNPHHDLELSLTTYSSHISTTLVEQVLKRCKNLGFSAQ-----RFFLWAKRIPGFDHSK 108

Query: 95  FMYNRACEMSRIKQNPSIIID-VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
             Y+   ++    +  +++ D ++E  + +   +S ++  ++F    +A L ++A+    
Sbjct: 109 ESYHILVDILGSSKQFALLWDFLIEIRESQDFEISPQVFWLVFRAYSRANLPSDAIRAFD 168

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M EF L+P     + ++ + C++     A ++   +          TY  +++G+ + G
Sbjct: 169 RMVEFGLKPTIDDLDQLLYVLCKRKHAKHAQQIFDRVKH-QFQTRAKTYSILVRGWGDIG 227

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
               AC +F  M+   CA +++AY++LL+  C+ G +  A ++  EM   G    P+  T
Sbjct: 228 ESVSACKVFDEMREQQCAVDVLAYNSLLEAFCKGGKVSEAYKMFREMGSNG--IKPDACT 285

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           ++  I+ +C    +  A  +LD M+     PN  T + +IK  C +  ++EAYQL+++++
Sbjct: 286 FSIFIRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNCMIKKLCKKEKVEEAYQLLNEII 345

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
                     Y++++        +  A +L S+M+     PD  + +++++ L   G+  
Sbjct: 346 ERSGQPDAWSYNAILAYHCEHSEVNSATRLISRMVKDNCLPDKHSYNMLLKLLIRVGRFD 405

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
               ++E + + GF  SV +  +SV++ GLC+K   +E A
Sbjct: 406 RAIEVWESMGEKGFYPSVST--YSVMVHGLCKKKGKLEEA 443



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 3/225 (1%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           V  +M E     D + YN+++  FC+ G +  A ++ + MG   + PD  T+   I+ +C
Sbjct: 235 VFDEMREQQCAVDVLAYNSLLEAFCKGGKVSEAYKMFREMGSNGIKPDACTFSIFIRAYC 294

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
            A  +  A  +   MKR+    N+  Y+ ++  +C+   +E A +LL E+ +  G   P+
Sbjct: 295 EANDIHLAYRVLDEMKRYDLVPNVFTYNCMIKKLCKKEKVEEAYQLLNEIIERSG--QPD 352

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
             +Y +++   C    +  A  ++ RM    C P++ + + L+K     G  D A ++ +
Sbjct: 353 AWSYNAILAYHCEHSEVNSATRLISRMVKDNCLPDKHSYNMLLKLLIRVGRFDRAIEVWE 412

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKP 374
            +   G   S   YS +V  L + K +L+EA K F  M+  G+ P
Sbjct: 413 SMGEKGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMIDEGIPP 457



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 131/281 (46%), Gaps = 14/281 (4%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V +  +E+ C V V     +     K    +EA  + R+M    ++PD   ++  IR +C
Sbjct: 235 VFDEMREQQCAVDVLAYNSLLEAFCKGGKVSEAYKMFREMGSNGIKPDACTFSIFIRAYC 294

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           E  D+  A  ++  M   DL P++ TY  MIK  C   ++E+A  L   +       +  
Sbjct: 295 EANDIHLAYRVLDEMKRYDLVPNVFTYNCMIKKLCKKEKVEEAYQLLNEIIERSGQPDAW 354

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           +Y+A+L   C    +  A  L+  M K+  +C P+  +Y  ++++    G    A+ + +
Sbjct: 355 SYNAILAYHCEHSEVNSATRLISRMVKD--NCLPDKHSYNMLLKLLIRVGRFDRAIEVWE 412

Query: 296 RMEALGCAPNRVTISTLIKGFC-VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
            M   G  P+  T S ++ G C  +G L+EA +  + ++  G       YSS  VE++R 
Sbjct: 413 SMGEKGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMIDEGIPP----YSS-TVEILRN 467

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL---GGQV 392
           + +      + ++LA G      ACS  I+EL +   GG+V
Sbjct: 468 RLIGLGLLDYIEILA-GKMEHSTACS--IQELAIAMRGGKV 505


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 154/295 (52%), Gaps = 8/295 (2%)

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           +M+ +  L E A   N    V  +M    +R   + +N +I   C  GD+  A+ L + M
Sbjct: 246 LMRDLVRLGELASAQN----VFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRM 301

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + PD+ TY ++I+G C  GR+EDA G+F+ M   G   N V ++ L+D  C+ G  
Sbjct: 302 SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDA 361

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E  LEL  EM + G    P+ VTY +++   C    +K A GI+  M + G  P+ VT +
Sbjct: 362 ETMLELHREMRERG--VRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYT 419

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           TLI G+C E  LD A ++   +VA G       Y++L+  L +  R  +AE++  +M+ +
Sbjct: 420 TLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEA 479

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           G++PD    +++I   C  G V  G  L ++++  G    V +  ++V++ G C+
Sbjct: 480 GLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVT--YNVIMNGFCK 532



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 125/252 (49%), Gaps = 5/252 (1%)

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
           K +   ++++    +E G          I N   +AR    A  ++ +M    LRPDT+ 
Sbjct: 358 KGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVT 417

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           Y  +I  +C++ ++  A E+ + M    +  D +TY ++I G   AGR  DA  +   M 
Sbjct: 418 YTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMM 477

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G   +   Y+ ++D  CR G ++  L LL EM+ +G    P VVTY  ++  FC  G 
Sbjct: 478 EAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGR--KPGVVTYNVIMNGFCKLGQ 535

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           MK A  +L+ M  +G +P+ +T + L+ G C  G + +  +L     A G+V   G Y+S
Sbjct: 536 MKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKS---AKGTVPDLGVYTS 592

Query: 347 LVVELVRTKRLK 358
           +V E+V+ K  K
Sbjct: 593 IVGEIVKKKTTK 604


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 163/339 (48%), Gaps = 35/339 (10%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ R+ +EA+ +L +M      P  +IYN +I   C+KGD+    +L+  M L    P
Sbjct: 232 LCKEERI-DEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVP 290

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + +TY ++I G C  G+L+ A  L + M    C  N V Y  L++G+ +      A+ LL
Sbjct: 291 NEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLL 350

Query: 258 GEMEKEG---------------------------------GDCSPNVVTYTSVIQIFCGK 284
             ME+ G                                   C PN+V Y+ ++   C +
Sbjct: 351 SSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCRE 410

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G   EA  IL+RM A GC PN  T S+L+KGF   G  +EA Q+  ++   G   +  CY
Sbjct: 411 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCY 470

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE- 403
           S L+  L    R+KEA  ++SKML  G+KPD +A S +I+ LC  G +     LY ++  
Sbjct: 471 SVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLC 530

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +    S  D   +++LL GLC +     A  L   ML +
Sbjct: 531 QEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDR 569



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 146/291 (50%), Gaps = 7/291 (2%)

Query: 110 PSIIIDVVEAYKEE-GCVVSVKMMKVIFNLCEKARLANEAM----WVLRKMPEFDLRPDT 164
           P   +D+     +E  C  SVK    + N+     L +  +    +V+      ++ P+ 
Sbjct: 128 PDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNG 187

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + +N VI+  C+   +  A E+ +GM      PD  TY +++ G C   R+++A  L   
Sbjct: 188 LSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDE 247

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+  GC+ + V Y+ L+DG+C+ G + R  +L+  M  +G  C PN VTY ++I   C K
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKG--CVPNEVTYNTLIHGLCLK 305

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + +A+ +L+RM +  C PN VT  TLI G   +    +A +L+  +   G   +   Y
Sbjct: 306 GKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIY 365

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           S L+  L +  + +EA  L+ KM   G KP+ +  SV++  LC  G+  E 
Sbjct: 366 SVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEA 416



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 142/311 (45%), Gaps = 52/311 (16%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + ++ + +E G  ++  +  V+ +   K   A EAM + RKM E   +P+ ++Y+ ++  
Sbjct: 347 VRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDG 406

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C +G    A E++  M      P+  TY S++KGF   G  E+A  ++K M + GC+ N
Sbjct: 407 LCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRN 466

Query: 234 -----------------------------------LVAYSALLDGICRLGSMERALELLG 258
                                               VAYS+++ G+C +GSM+ AL+L  
Sbjct: 467 KFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYH 526

Query: 259 EME-KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
           EM  +E     P+VVTY  ++   C +  +  A+ +L+ M   GC P+ +T +T +    
Sbjct: 527 EMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLS 586

Query: 318 VEGN-LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
            + N  D+    +++               LVV L++ +R+  A  +   ML   + P  
Sbjct: 587 EKSNSCDKGRSFLEE---------------LVVRLLKRQRVSGACTIVEVMLGKYLAPKT 631

Query: 377 LACSVMIRELC 387
              ++++RE+C
Sbjct: 632 STWAMIVREIC 642



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 114/212 (53%), Gaps = 4/212 (1%)

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
           + N ++++ ++  +C+L  ++RA+E+   M +    C P+  TY +++   C +  + EA
Sbjct: 184 SPNGLSFNLVIKALCKLRFVDRAIEVFRGMPER--KCLPDGYTYCTLMDGLCKEERIDEA 241

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           + +LD M++ GC+P+ V  + LI G C +G+L    +L+D +   G V +   Y++L+  
Sbjct: 242 VLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHG 301

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L    +L +A  L  +M++S   P+ +    +I  L    +  +   L   +E+ G+   
Sbjct: 302 LCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGY--H 359

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           ++  I+SVL+ GL ++  + EA  L R M +K
Sbjct: 360 LNQHIYSVLISGLFKEGKAEEAMSLWRKMAEK 391



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 154/338 (45%), Gaps = 10/338 (2%)

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
           M+V+ N  E A ++ +      KM  F L   T+  +++I  +   GD  + ++L+  + 
Sbjct: 48  MEVVENPLE-APISEKMFKSAPKMGSFKLGDSTL--SSMIESYANSGDFDSVEKLLSRIR 104

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSALLDGICRLGSM 250
           L +      +++ + + +  A   + A  LF +++    C  ++ +++++L+ I   G  
Sbjct: 105 LENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLY 164

Query: 251 ERALELLGEM--EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            R LE    +       + SPN +++  VI+  C    +  A+ +   M    C P+  T
Sbjct: 165 HRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYT 224

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
             TL+ G C E  +DEA  L+D++ + G   S   Y+ L+  L +   L    KL   M 
Sbjct: 225 YCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMF 284

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI-HSVLLLGLCRKN 427
             G  P+ +  + +I  LCL G++ +   L   +E++     + +D+ +  L+ GL ++ 
Sbjct: 285 LKGCVPNEVTYNTLIHGLCLKGKLDKAVSL---LERMVSSKCIPNDVTYGTLINGLVKQR 341

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            + +A +L   M ++   L       ++  L K G  E
Sbjct: 342 RATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAE 379


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 184/432 (42%), Gaps = 74/432 (17%)

Query: 21  IFALHFTTASPAERFYTHL---------QKNPNNIEKTLATVKAKLDSTCVIEVLHRCFP 71
           IF L F + S A   + +L         Q++  N  K +    + L    V ++L     
Sbjct: 82  IFRLPFVSYSNANNSFQYLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKIL-LGLR 140

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKE--------- 122
              ++ ++FF WA  Q  +RH++  Y   C +  +     +  D  +  KE         
Sbjct: 141 EDPKLALKFFKWAGSQVGFRHTTESY---CIIVHLVFRARMYTDAHDTVKEVIMNSRMDM 197

Query: 123 ---------------EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF--------- 158
                            CV    +  V+F++  +  L  EA     +M  F         
Sbjct: 198 GFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSC 257

Query: 159 --------------------------DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
                                      + P    YN +I   C++GD+  +  L   M  
Sbjct: 258 NFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMRE 317

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           + L PD++TY S+I G+   G LE+   LF  MK  GC  +++ Y+ L++  C+   M R
Sbjct: 318 MGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPR 377

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A E   EM+  G    PNVVTY+++I  FC +GMM+ A+ +   M   G  PN  T ++L
Sbjct: 378 AFEYFSEMKNNG--LKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSL 435

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I   C  GNL EA++L++ ++  G   +   Y++L+  L +  R+ EAE++F  ML  G+
Sbjct: 436 IDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGI 495

Query: 373 KPDGLACSVMIR 384
            P+    + ++ 
Sbjct: 496 SPNQQVYTALVH 507



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 133/267 (49%), Gaps = 13/267 (4%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++  L N +  +  +M E  L PD + YN++I  + + G +     L   M  +   P
Sbjct: 299 LCKEGDLEN-SRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVP 357

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DIITY  +I  +C   ++  A   F  MK +G   N+V YS L+D  C+ G M+ A++L 
Sbjct: 358 DIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLF 417

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M + G    PN  TYTS+I   C  G + EA  +L+ M   G   N VT + L+ G C
Sbjct: 418 VDMRRTG--LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLC 475

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G + EA ++   ++  G   +   Y++LV   ++ +R+++A K+  +M    +KPD  
Sbjct: 476 KAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD-- 533

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEK 404
                   L L G ++ G C    +E+
Sbjct: 534 --------LILYGSIIWGHCSQRKLEE 552



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 135/269 (50%), Gaps = 2/269 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA    +AM +L++M E +++PD I+Y ++I   C +  +     +++ M    +  + +
Sbjct: 511 KAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPV 570

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
              ++I  +  AG+  DA   F+ M+  G  A +V Y  L+DG+C+ G +E A++    M
Sbjct: 571 ISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRM 630

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G    PNV  YTS+I   C    ++ A  + D M+  G  P+    + LI G    G
Sbjct: 631 LSLG--LQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHG 688

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           NL EA  LI ++           Y+SLV    +   L +A K F++M+  G+ P+ + C 
Sbjct: 689 NLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCI 748

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            ++RE    GQ+ E   L  ++E++G ++
Sbjct: 749 CLLREYYKRGQLDEAIELKNEMERMGLIT 777



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 154/314 (49%), Gaps = 5/314 (1%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K+ GCV  +     + N   K      A     +M    L+P+ + Y+ +I  FC++G M
Sbjct: 351 KDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMM 410

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A +L   M    L P+  TY S+I   C AG L +A  L   M + G   N+V Y+AL
Sbjct: 411 QGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTAL 470

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           LDG+C+ G M  A E+   M K+G   SPN   YT+++  +     M++A+ IL +M   
Sbjct: 471 LDGLCKAGRMIEAEEVFRSMLKDG--ISPNQQVYTALVHGYIKAERMEDAMKILKQMTEC 528

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
              P+ +   ++I G C +  L+E   +++++ + G  ++    ++++    +  +  +A
Sbjct: 529 NIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDA 588

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
              F +M   GV+   +   V+I  LC  G V      +  +  +G   +V   +++ L+
Sbjct: 589 LNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNV--AVYTSLI 646

Query: 421 LGLCRKNHSVEAAK 434
            GLC KN+ +E+AK
Sbjct: 647 DGLC-KNNCIESAK 659



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 4/304 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA    EA  +L  M +  ++ + + Y  ++   C+ G MI A+E+ + M    + P+  
Sbjct: 441 KAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQ 500

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            Y +++ G+  A R+EDA  + K M       +L+ Y +++ G C    +E    +L EM
Sbjct: 501 VYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEM 560

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           +  G   S N V  T++I  +   G   +AL     M+ +G     VT   LI G C  G
Sbjct: 561 KSRG--ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAG 618

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            ++ A     ++++ G   +   Y+SL+  L +   ++ A+KLF +M   G+ PD  A +
Sbjct: 619 IVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFT 678

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            +I      G + E   L   + ++      D  +++ L+ G  +     +A K    M+
Sbjct: 679 ALIDGNLKHGNLQEALVLISRMTELAI--EFDLHVYTSLVSGFSQCGELHQARKFFNEMI 736

Query: 441 KKRI 444
           +K I
Sbjct: 737 EKGI 740



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 2/227 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  K  G   +  +   I +   KA  +++A+   ++M +  +    + Y  +I   C
Sbjct: 556 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLC 615

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A +    M  + L P++  Y S+I G C    +E A  LF  M+  G   ++ 
Sbjct: 616 KAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDIT 675

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           A++AL+DG  + G+++ AL L+  M +   +   +V  YTS++  F   G + +A    +
Sbjct: 676 AFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHV--YTSLVSGFSQCGELHQARKFFN 733

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            M   G  P  V    L++ +   G LDEA +L +++   G ++   
Sbjct: 734 EMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGLITESA 780


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 209/431 (48%), Gaps = 35/431 (8%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE 102
           + ++ +LA +   L  T V++ L     P+++   + FF W   +       F +N    
Sbjct: 173 HELQSSLAELAPSLSKTTVLQTLQLIRTPAKA---LHFFRWVEAKG------FTHN---- 219

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP 162
               +Q+  ++I+++   +             +F++ EK     E++ V + M E  + P
Sbjct: 220 ----EQSYFLMIEILGRSRNLNAA-----RNFVFSI-EKKSGGAESIKVFKTMKEIGVSP 269

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY---PDIITYVSMIKGFCNAGRLEDAC 219
             + +N+++ +  ++G    A +L   M  +D Y   PD  T+  +I+GFC    +++  
Sbjct: 270 SVVTFNSLLSIVLKRGRTSMAKQLFDEM--LDTYGVTPDTYTFNILIRGFCMNSMVDEGF 327

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
             FK M R  C  ++V Y+ L+DG+CR G ++ A  ++  M K+  + SPNVVTYT++I+
Sbjct: 328 WFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIR 387

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +C K  M EAL +L  M + G  PN++T +TLI+G C    LD+  ++++ +V  G   
Sbjct: 388 GYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFI 447

Query: 340 SGGC-YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
              C  ++L+       +L+EA  +F KM    V+PD    SV++R LC  G        
Sbjct: 448 PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEF 507

Query: 399 YEDI-EKIGFLSSVDSD----IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
           ++++ EK   L  V        ++ +   LC    + +A ++ R ++K+       Y   
Sbjct: 508 FDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTL 567

Query: 454 IVEHLKKSGDE 464
           I+ H ++   E
Sbjct: 568 ILGHCREGTPE 578



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 163/394 (41%), Gaps = 63/394 (15%)

Query: 102 EMSRIKQNPSIII------------------DVVEAYKEEGCVVS---VKMMKVIFNLCE 140
           EMSR K +P ++                   +VV+   ++   +S   V    +I   C 
Sbjct: 332 EMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCM 391

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDI 199
           K  +A EA+ +L +M    L+P+ I YN +I+  CE   +    E+++GM G     PD 
Sbjct: 392 KQDMA-EALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDT 450

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            T  ++IK  C  G+LE+A  +F+ M       +   YS L+  +C+ G   RA E   E
Sbjct: 451 CTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDE 510

Query: 260 M-EKE----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           + EKE       C P V  Y  + +  C  G  K+A  +  ++   G   +  +  TLI 
Sbjct: 511 LAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLIL 569

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C EG  +  + L+  ++    V     Y  ++  L++      A K   KML S   P
Sbjct: 570 GHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLP 629

Query: 375 DG------LACSV---------------MIRELCLGGQVLEGF----CLYEDIEKIGFLS 409
                   LA  V                +R L   G   + F     LYE+    G+L 
Sbjct: 630 TTAIFHSILAALVEKERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYEN----GYLV 685

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
            ++      L+  LC+    +EA K+  F L+KR
Sbjct: 686 KMEE-----LVSFLCQSRKLLEAQKMLLFSLEKR 714



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 122/285 (42%), Gaps = 28/285 (9%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-------PDI 199
           EA  V  KM E  ++PD+  Y+ ++R  C++GD   A+E    +   ++        P +
Sbjct: 468 EAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLV 527

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
             Y  M +  C+ G+ + A  +F+ + + G   +  +Y  L+ G CR G+ E   +LL  
Sbjct: 528 AAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVL 586

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC-- 317
           M +   D  P+  TY  +I     KG    A   L++M      P      +++      
Sbjct: 587 MLRR--DFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVEK 644

Query: 318 ---VEGNLDEAYQLIDKVVAGG-----SVSSGGCYSS--------LVVELVRTKRLKEAE 361
              +  N+D +   +  +   G      ++ G  Y +        LV  L ++++L EA+
Sbjct: 645 ERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVKMEELVSFLCQSRKLLEAQ 704

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           K+    L      D   CS +I  LC   +V E F LY ++ + G
Sbjct: 705 KMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKG 749


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 151/290 (52%), Gaps = 8/290 (2%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           + +L E+AR + + + V R++   D +P+ + Y  +++  C  G +  A   +  M    
Sbjct: 6   LLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREK 65

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           L PD+ TY  +I   C A R+  A   F+ M       ++V Y+ LL G+C+ G + +A 
Sbjct: 66  LVPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQAC 121

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L G ME  G   +P+ VTYT++I +FC     + A G+L  M +  C+P   +  ++I 
Sbjct: 122 SLFGSME--GAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIIN 179

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C    +D+AYQL +++   G       Y++L+  L   +RL EA+ L + M+ +G +P
Sbjct: 180 GLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQP 239

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           D +  + +I  LC   ++ E F L++ + K G   + D   H+VL+  LC
Sbjct: 240 DKITFTALIEGLCTTDRIKEAFVLFQGMAKQG--CAPDLVTHTVLVSKLC 287



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 142/286 (49%), Gaps = 7/286 (2%)

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP 162
           + R +++  I++     + ++    ++    ++  LC   ++ ++A   + +M    L P
Sbjct: 10  LERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKI-DKACSTIAEMAREKLVP 68

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D   YN VI   C+   +  A E  + M      PD++TY +++ G C  GR+  AC LF
Sbjct: 69  DVFTYNVVIDTLCKARRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLF 124

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M+  G   + V Y+ L+D  C++   E A  LL  M      CSP V +Y S+I   C
Sbjct: 125 GSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASR--KCSPTVYSYCSIINGLC 182

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
               + +A  + + M+  GC P+RVT +TLI G CV+  L EA  L+  +V  G      
Sbjct: 183 KNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKI 242

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            +++L+  L  T R+KEA  LF  M   G  PD +  +V++ +LC+
Sbjct: 243 TFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCI 288



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 174/411 (42%), Gaps = 49/411 (11%)

Query: 95  FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           ++    C   +I +  S I ++      E  V  V    V+ +   KAR  + A+     
Sbjct: 40  YLVKALCRTGKIDKACSTIAEMAR----EKLVPDVFTYNVVIDTLCKARRISRAIEFFET 95

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           MPE    PD + YN ++   C+ G +  A  L   M    + P  +TY ++I  FC   +
Sbjct: 96  MPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQ 151

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            E A GL ++M    C+  + +Y ++++G+C+   +++A +L  EM+  G  C P+ VTY
Sbjct: 152 FETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAG--CKPDRVTY 209

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            ++I   C K  + EA  +L  M   G  P+++T + LI+G C    + EA+ L   +  
Sbjct: 210 NTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAK 269

Query: 335 GGSVSS---------------------------GGC------YSSLVVELVRTKRLKEAE 361
            G                                 C      Y+ +  EL R +    A 
Sbjct: 270 QGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAA 329

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVL 419
           +L  KM   GV P+ +  +   + L   G   EG   Y +  ++     ++ D+  ++VL
Sbjct: 330 RLLQKMARRGVPPNVVTYTAFFKGL---GDWKEGMRAYREFRRM-LEQGIEPDMVAYNVL 385

Query: 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           + G C+ +    A K+ R+M +  +       + +V H  + G  E I  L
Sbjct: 386 VDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGEL 436



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 131/294 (44%), Gaps = 42/294 (14%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K R  ++A  +  +M     +PD + YN +I   C K  +  A +L+  M   
Sbjct: 177 IINGLC-KNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVEN 235

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC-------- 245
              PD IT+ ++I+G C   R+++A  LF+ M + GCA +LV ++ L+  +C        
Sbjct: 236 GFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPA 295

Query: 246 -------------------------RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
                                    R    +RA  LL +M + G    PNVVTYT+    
Sbjct: 296 LSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRG--VPPNVVTYTA---F 350

Query: 281 FCGKGMMKEALGI---LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           F G G  KE +       RM   G  P+ V  + L+ GFC    LD A +++  +   G 
Sbjct: 351 FKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGL 410

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
             +   Y++LV    R  +++   +L   M++ G +PD    S ++  L + GQ
Sbjct: 411 PPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQ 464



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 12/238 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   RIK+       + +   ++GC   +    V+ +     R    A+ V+R  P    
Sbjct: 252 CTTDRIKE----AFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPAC-- 305

Query: 161 RPDTII-YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            P+ +I Y  + R    +     A  L++ M    + P+++TY +  KG  +      A 
Sbjct: 306 -PEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAY 364

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
             F+ M   G   ++VAY+ L+DG C+   ++ A +++  M++ G    PN+VTY +++ 
Sbjct: 365 REFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSG--LPPNIVTYNTLVG 422

Query: 280 IFCGKGMMKEALG-ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
             C KG + EA+G +L  M + G  P+  T STL+ G  + G  D AY  ++  ++ G
Sbjct: 423 HHCRKGKV-EAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFLNLAMSQG 479


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 155/295 (52%), Gaps = 4/295 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ +LR M      P+ + YN ++  F   G++  A+ L+  M    L P+++T+ SM+
Sbjct: 208 EALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMV 267

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C AG++EDA  +F  M R G A + V+Y+ L+ G C+ G    AL +  EM ++G  
Sbjct: 268 NGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKG-- 325

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+VVT+TS+I + C  G ++ A+ ++ +M   G   N VT + LI GFC +G LD+A 
Sbjct: 326 IMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDAL 385

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
             +  +       S  CY++L+       R+ EA +L  +M A G+KPD +  S +I   
Sbjct: 386 LAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAY 445

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           C        F L + + + G L   D+  +S L+  LC +    +A  L + M+K
Sbjct: 446 CKNCDTHSAFELNQQMLEKGVLP--DAITYSSLIRVLCGEKRLSDAHVLFKNMIK 498



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 159/309 (51%), Gaps = 9/309 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  +C+  ++  +A  V  +M    L PD + YN ++  +C+ G    A  +  
Sbjct: 261 VTFNSMVNGMCKAGKM-EDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFA 319

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD++T+ S+I   C AG LE A  L + M+  G   N V ++AL+DG C+ G
Sbjct: 320 EMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKG 379

Query: 249 SMERALELLGEMEKEGGDC--SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            ++ AL  +  M++    C   P+VV Y ++I  +C  G M EA  +L  MEA G  P+ 
Sbjct: 380 FLDDALLAVRGMKQ----CRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDV 435

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT ST+I  +C   +   A++L  +++  G +     YSSL+  L   KRL +A  LF  
Sbjct: 436 VTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKN 495

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M+  G++PD    + +I   C  G V     L++ + K G L  V +  +SVL+ GL + 
Sbjct: 496 MIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVT--YSVLINGLSKS 553

Query: 427 NHSVEAAKL 435
             ++EA +L
Sbjct: 554 ARAMEAQQL 562



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 174/348 (50%), Gaps = 48/348 (13%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA  ++EA+ V  +M +  + PD + + ++I + C+ G++  A  L++ M    L  + +
Sbjct: 307 KAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEV 366

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T+ ++I GFC  G L+DA    + MK+     ++V Y+AL++G C +G M+ A ELL EM
Sbjct: 367 TFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEM 426

Query: 261 EKEG----------------GDCS-----------------PNVVTYTSVIQIFCGKGMM 287
           E +G                 +C                  P+ +TY+S+I++ CG+  +
Sbjct: 427 EAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRL 486

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            +A  +   M  LG  P+  T ++LI G C EGN++ A  L DK+V  G +     YS L
Sbjct: 487 SDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVL 546

Query: 348 VVELVRTKRLKEAEKLFSKM-----LASGVKPDGLACSVMIRELCLGGQVLEGFC---LY 399
           +  L ++ R  EA++L  K+     + +  K D L       EL     +L+GFC   L 
Sbjct: 547 INGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLM 606

Query: 400 EDIEKIGFLS------SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            + +K+ + S      ++D  ++SVL+ G CR  + ++A    + ML+
Sbjct: 607 NEADKV-YQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQ 653



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 132/277 (47%), Gaps = 18/277 (6%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R+ +EA  +L +M    L+PD + Y+ +I  +C+  D  +A EL + M   
Sbjct: 406 LINGYCMVGRM-DEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEK 464

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD ITY S+I+  C   RL DA  LFK M + G   +   Y++L+DG C+ G++E A
Sbjct: 465 GVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESA 524

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV------ 307
           L L  +M K G    P+VVTY+ +I          EA  +L ++      P         
Sbjct: 525 LSLHDKMVKAG--VLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALM 582

Query: 308 ---------TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
                    ++  L+KGFC++G ++EA ++   ++       G  YS L+    R   + 
Sbjct: 583 HCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVM 642

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           +A     +ML  G  P+  +   +IR L   G V+E 
Sbjct: 643 KALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEA 679



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 123/242 (50%), Gaps = 7/242 (2%)

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   +++AY+A+L  +    S+  A      M  +G   +PNV TY  +++  CG+G  K
Sbjct: 151 GYVPSVLAYNAVLLALSD-ASLTSARRFFDSMLSDG--VAPNVYTYNILVRALCGRGHRK 207

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           EAL IL  M   GC PN VT +TL+  F   G +D A +L+  +  GG   +   ++S+V
Sbjct: 208 EALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMV 267

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             + +  ++++A K+F +M+  G+ PDG++ + ++   C  G   E   ++ ++ + G +
Sbjct: 268 NGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIM 327

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG--DEEL 466
             V +   + L+  +C+  +   A  L R M ++ + +       +++   K G  D+ L
Sbjct: 328 PDVVT--FTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDAL 385

Query: 467 IT 468
           + 
Sbjct: 386 LA 387



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 61/126 (48%)

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           L NEA  V + M + +   D  +Y+ +I   C  G+++ A    K M      P+  + +
Sbjct: 605 LMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTI 664

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S+I+G    G + +A  + + +  +   A+  A  AL+D     G+++  L++L  M K+
Sbjct: 665 SLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKD 724

Query: 264 GGDCSP 269
           G   SP
Sbjct: 725 GLLPSP 730


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 169/325 (52%), Gaps = 4/325 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++     GCV  V    ++     K     +AM +L +M      PD I YN V+   C
Sbjct: 178 VLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGIC 237

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G +  A E +K +      P+ ++Y  ++KG C A R EDA  L   M + G   N+V
Sbjct: 238 QEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVV 297

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L+  +CR G +E A+E+L ++ K G  C+PN ++Y  ++  FC +  M  A+  ++
Sbjct: 298 TFNMLISFLCRRGLVEPAMEVLDQIPKYG--CTPNSLSYNPILHAFCKQKKMDRAMAFVE 355

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M + GC P+ V+ +TL+   C  G +D A +L+ ++   G       Y++++  L +  
Sbjct: 356 LMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAG 415

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           + KEA +L ++M+  G++PD +  S +   LC   ++ E    +  ++ +G     ++ +
Sbjct: 416 KTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRP--NTVL 473

Query: 416 HSVLLLGLCRKNHSVEAAKLARFML 440
           ++ +LLGLC++  +  A  L  +M+
Sbjct: 474 YNAILLGLCKRRETHNAIDLFIYMI 498



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 136/261 (52%), Gaps = 5/261 (1%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           VV+  M+  I  LC +  L   AM VL ++P++   P+++ YN ++  FC++  M  A  
Sbjct: 296 VVTFNML--ISFLCRRG-LVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 352

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
            ++ M     YPDI++Y +++   C  G ++ A  L   +K  GC   L++Y+ ++DG+ 
Sbjct: 353 FVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLT 412

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G  + ALELL EM  +G    P+++TY+++    C +  ++EA+    +++ +G  PN
Sbjct: 413 KAGKTKEALELLNEMVTKG--LQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPN 470

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  + ++ G C       A  L   +++ G + +   Y+ L+  L     +KEA +L  
Sbjct: 471 TVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLG 530

Query: 366 KMLASGVKPDGLACSVMIREL 386
           ++ + GV   GL     IR L
Sbjct: 531 ELCSRGVVSKGLINKAAIRLL 551



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 155/313 (49%), Gaps = 8/313 (2%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMP 156
           N  C+  R+       I+ +++    GC  +     ++   LC   R   +A  ++ +M 
Sbjct: 234 NGICQEGRVDD----AIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERW-EDAEKLMAEMS 288

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           +    P+ + +N +I   C +G +  A E++  +      P+ ++Y  ++  FC   +++
Sbjct: 289 QKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMD 348

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            A    ++M   GC  ++V+Y+ LL  +CR G ++ A+ELL +++ +G  C+P +++Y +
Sbjct: 349 RAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKG--CTPVLISYNT 406

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           VI      G  KEAL +L+ M   G  P+ +T ST+  G C E  ++EA +   KV   G
Sbjct: 407 VIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMG 466

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
              +   Y+++++ L + +    A  LF  M+++G  P+    +++I  L   G V E  
Sbjct: 467 IRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEAR 526

Query: 397 CLYEDIEKIGFLS 409
            L  ++   G +S
Sbjct: 527 ELLGELCSRGVVS 539



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 128/246 (52%), Gaps = 7/246 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD++ Y +M+ G+C  G+L+ A  L   M       +   Y+ L+ G+C  G    AL +
Sbjct: 122 PDVMAYNAMVAGYCVTGQLDAARRLVADMPME---PDSYTYNTLIRGLCGRGRTGNALVV 178

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L +M + G  C P+VVTYT +++  C +   K+A+ +LD M A GCAP+ +T + ++ G 
Sbjct: 179 LDDMLRRG--CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGI 236

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C EG +D+A + +  + + G   +   Y+ ++  L   +R ++AEKL ++M   G  P+ 
Sbjct: 237 CQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNV 296

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  +++I  LC  G V     + + I K G   + +S  ++ +L   C++     A    
Sbjct: 297 VTFNMLISFLCRRGLVEPAMEVLDQIPKYG--CTPNSLSYNPILHAFCKQKKMDRAMAFV 354

Query: 437 RFMLKK 442
             M+ +
Sbjct: 355 ELMVSR 360



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 49/284 (17%)

Query: 231 AANLVAYSAL----LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           + N V + A+    L G+ R G +E AL L+  M       +P      ++I+  C  G 
Sbjct: 52  SPNAVPHRAVSNDRLRGLVRRGDLEEALRLVESMSGLEPSAAPGPCA--ALIKKLCASGR 109

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI----------------- 329
             EA  +L       C P+ +  + ++ G+CV G LD A +L+                 
Sbjct: 110 TAEARRVL-----AACEPDVMAYNAMVAGYCVTGQLDAARRLVADMPMEPDSYTYNTLIR 164

Query: 330 ---------------DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
                          D ++  G V     Y+ L+    +    K+A KL  +M A G  P
Sbjct: 165 GLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAP 224

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  +V++  +C  G+V +     + +   G   +  S  ++++L GLC      +A K
Sbjct: 225 DIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVS--YNIVLKGLCTAERWEDAEK 282

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSG----DEELITNLPKIG 474
           L   M +K         + ++  L + G      E++  +PK G
Sbjct: 283 LMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYG 326


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 144/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 279 SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 339 HRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G + SV
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSV 422



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 3/187 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM + ++M    L PD I YN +I   C+KGD+  A  L+ 
Sbjct: 248 VTFTTLIDGHCKNGRV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID 306

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  L PD ITY ++I G C  G L+ A    K M +     + VAY+AL+ G+C+ G
Sbjct: 307 EMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEG 366

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G    P+  TYT +I  FC KG + +   +L  M+  G  P+ VT
Sbjct: 367 RSVDAEKMLREMLSVG--LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 424

Query: 309 ISTLIKG 315
            + L+ G
Sbjct: 425 YNVLMNG 431



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 147/336 (43%), Gaps = 35/336 (10%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           R D  +++ +I  + E G +  A E  +       +  I T   +++        +   G
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWG 128

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            ++ +   G  A+L  ++ L+   C+ G +  A  +   + K G    P+VV+Y +++  
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWG--LRPSVVSYNTLMNG 186

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +   G + E   +   M A G  P+  T S LI G C E  +D+A +L D+++  G V +
Sbjct: 187 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPN 246

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  +++L+    +  R+  A +++ +ML+  + PD +  + +I  LC  G + +   L +
Sbjct: 247 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID 306

Query: 401 DI-------EKIGFLSSVD-----SDI---------------------HSVLLLGLCRKN 427
           ++       +KI + + +D      D+                     ++ L+ GLC++ 
Sbjct: 307 EMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEG 366

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            SV+A K+ R ML   +         I+    K GD
Sbjct: 367 RSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGD 402


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 191/397 (48%), Gaps = 50/397 (12%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARL--ANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           +V+    E GC   ++M   I + +C++  L  ANE   +L +MP + L+P+ + YN V+
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANE---ILNRMPSYGLKPNVVCYNTVL 328

Query: 172 RLFCEKGDMIAADELMKGM----------------------GLID-------------LY 196
           +  C       A+EL+  M                      GL+D               
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCM 388

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+ITY ++I GFC  G +++A  L K M   GC  N V+Y+ +L G+C  G    A EL
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           + +M ++G  C PN VT+ ++I   C KG++++A+ +L +M   GC+P+ ++ ST+I G 
Sbjct: 449 MSQMIQQG--CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 506

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
              G  +EA +L++ +V  G   +   YSS+   L R  R+ +  ++F  +  + ++ D 
Sbjct: 507 GKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDA 566

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL- 435
           +  + +I  LC   +       +  +   G +   +   +++L+ GL  +  + EA +L 
Sbjct: 567 VLYNAVISSLCKRWETDRAIDFFAYMVSNGCMP--NESTYTMLIKGLASEGLAKEAQELL 624

Query: 436 ----ARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
               +R  L+K +       +   E+ K+  +E L +
Sbjct: 625 SELCSRGALRKHLMRHFGISNCTQENGKQKCEENLTS 661



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 172/365 (47%), Gaps = 37/365 (10%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V+EA   +GC +      ++ N +CE+    +EA+ +LRK+  F    D + YN V++
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQG-CVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C        +ELM  M  +D  P+I+T+ ++I   C  G  E    +   M  HGC  
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG---------------------------- 264
           ++  Y+ ++DGIC+ G +E A E+L  M   G                            
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELL 344

Query: 265 -----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
                 DC  + VT+  ++  FC  G++   + +L++M + GC P+ +T +T+I GFC E
Sbjct: 345 SEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE 404

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +DEA  L+  + + G   +   Y+ ++  L    R  +AE+L S+M+  G  P+ +  
Sbjct: 405 GLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTF 464

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + +I  LC  G V +   L + +   G   S D   +S ++ GL +   + EA +L   M
Sbjct: 465 NTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTEEALELLNVM 522

Query: 440 LKKRI 444
           + K I
Sbjct: 523 VNKGI 527



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 163/353 (46%), Gaps = 7/353 (1%)

Query: 113 IIDVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           I D +E   E   +GC     M  VI     ++     ++ VL  M       DT   N 
Sbjct: 127 IADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNL 186

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           V+   CE+G +  A  L++ +       DI++Y +++KG C A R  D   L   M R  
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           CA N+V ++ L+  +CR G  ER  E+L +M + G  C+P++  Y ++I   C +G ++ 
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHG--CTPDIRMYATIIDGICKEGHLEV 304

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  IL+RM + G  PN V  +T++KG C      EA +L+ ++           ++ LV 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
              +   +    +L  +ML+ G  PD +  + +I   C  G + E   L + +   G   
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +  S  ++++L GLC     V+A +L   M+++         + ++  L K G
Sbjct: 425 NTVS--YTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 2/259 (0%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +I+++E     GC+  V     + N   K  L +EA+ +L+ M     +P+T+ Y  V++
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G  + A+ELM  M      P+ +T+ ++I   C  G +E A  L K M  +GC+ 
Sbjct: 435 GLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 494

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L++YS ++DG+ + G  E ALELL  M  +G   SPN + Y+S+      +G + + + 
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKG--ISPNTIIYSSIACALSREGRVNKVIQ 552

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D ++      + V  + +I   C     D A      +V+ G + +   Y+ L+  L 
Sbjct: 553 MFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLA 612

Query: 353 RTKRLKEAEKLFSKMLASG 371
                KEA++L S++ + G
Sbjct: 613 SEGLAKEAQELLSELCSRG 631



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 135/298 (45%), Gaps = 7/298 (2%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + YN ++  +C  G + AA  L      + + P+  T+  +++G C  GR+ DA  +   
Sbjct: 80  VAYNAMVAGYCRAGQLAAARRLAA---AVPVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   GCA     Y  +L+  CR G    ++ +L  M  +G  C+ +      V+   C +
Sbjct: 137 MSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG--CTLDTGNCNLVLNAICEQ 194

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + EA+G+L ++   GC  + V+ + ++KG C+     +  +L+D++V      +   +
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++L+  L R    +   ++ ++M   G  PD    + +I  +C  G +     +   +  
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPS 314

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            G   +V    ++ +L GLC      EA +L   M +K   L     + +V+   ++G
Sbjct: 315 YGLKPNVVC--YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG 370



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 55/265 (20%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++I+  C+AGR  +A    + +   G AA +VAY+A++ G CR G +  A  L   +   
Sbjct: 52  ALIRSLCSAGRTAEA---ARALADAGDAAGVVAYNAMVAGYCRAGQLAAARRLAAAVP-- 106

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP------------------- 304
                PN  T+  V++  C +G + +AL +LD M   GCAP                   
Sbjct: 107 ---VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFR 163

Query: 305 NRVTI----------------STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           N V +                + ++   C +G +DEA  L+ K+   G  +    Y++++
Sbjct: 164 NSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVL 223

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI-EKIGF 407
             L   KR  + E+L  +M+     P+ +  + +I  LC  G       L+E + E +  
Sbjct: 224 KGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG-------LFERVHEVLAQ 276

Query: 408 LS----SVDSDIHSVLLLGLCRKNH 428
           +S    + D  +++ ++ G+C++ H
Sbjct: 277 MSEHGCTPDIRMYATIIDGICKEGH 301


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 173/316 (54%), Gaps = 8/316 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC+  R   +A+ +L +M +    P+   YN ++   CE+  +  A ++++
Sbjct: 81  VTYTNIVDGLCKAGR-TKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLE 139

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +   +PD++TY S IKG C   R+++A    K + R     ++V+Y+ +++G+C+ G
Sbjct: 140 EMAVRGYFPDVVTYNSFIKGLCKCDRVDEA---RKFLARMPVTPDVVSYTTVINGLCKSG 196

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ A  +L +M   G  C+P+VVTY+S+I  FC  G ++ A+G+LD M  LGC PN V 
Sbjct: 197 DLDSASRMLDQMTNRG--CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVA 254

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            ++L+      G++ +A  ++ ++   G       Y++ +  L + +R+K+A+ +F +M+
Sbjct: 255 YNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMV 314

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G  P+  + S+++ ELC   ++ +   L E   +      VD  +++VLL GLC+   
Sbjct: 315 ERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREK--YQIVDILLYTVLLDGLCKGGR 372

Query: 429 SVEAAKLARFMLKKRI 444
             EA  L   +L ++I
Sbjct: 373 FDEACALFSKVLDEKI 388



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 162/309 (52%), Gaps = 10/309 (3%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I  LC+  R+ +EA   L +MP   + PD + Y  VI   C+ GD+ +A  ++  M    
Sbjct: 157 IKGLCKCDRV-DEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRG 212

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             PD++TY S+I GFC  G +E A GL   M + GC  N+VAY++LL  + RLG + +A 
Sbjct: 213 CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAE 272

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           ++L EME+ G   +P+VV+Y + I   C    +K+A  + DRM   GC PN  + S L++
Sbjct: 273 DMLVEMERRG--FTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVE 330

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-K 373
             C +  LD+A  L+++      +     Y+ L+  L +  R  EA  LFSK+L   + +
Sbjct: 331 ELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICE 390

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD    +VM+   C   Q+ +   +++ + +    + V     ++L+ GLC  +   +A 
Sbjct: 391 PDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVV---TWNILVHGLCVDDRLSDAE 447

Query: 434 KLARFMLKK 442
            +   M+ +
Sbjct: 448 TMLLTMVDE 456



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 176/345 (51%), Gaps = 16/345 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+  R K      + +++  +++GC  ++    VI   LCE+ +L +EA  +L +M    
Sbjct: 91  CKAGRTKD----AVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKL-DEAKKMLEEMAVRG 145

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             PD + YN+ I+  C K D +  DE  K +  + + PD+++Y ++I G C +G L+ A 
Sbjct: 146 YFPDVVTYNSFIKGLC-KCDRV--DEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSAS 202

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +   M   GC  ++V YS+L+DG C+ G +ERA+ LL  M K G  C PN+V Y S++ 
Sbjct: 203 RMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLG--CRPNMVAYNSLLG 260

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                G + +A  +L  ME  G  P+ V+ +  I G C    + +A  + D++V  G   
Sbjct: 261 ALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTP 320

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   YS LV EL + K L +A  L  +        D L  +V++  LC GG+  E   L+
Sbjct: 321 NASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALF 380

Query: 400 EDI--EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             +  EKI      D   ++V+L   C++    +A ++ + ML++
Sbjct: 381 SKVLDEKI---CEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLER 422



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 7/245 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD  T+  +++G C + +LE A  L   MK  GC  +   Y+AL+ G  +     +A + 
Sbjct: 8   PDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 67

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EM K    C P VVTYT+++   C  G  K+A+ +LD M   GC+PN  T + +++G 
Sbjct: 68  LAEMVK--NHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGL 125

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C E  LDEA ++++++   G       Y+S +  L +  R+ EA K  ++M    V PD 
Sbjct: 126 CEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDV 182

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           ++ + +I  LC  G +     + + +   G   + D   +S L+ G C+      A  L 
Sbjct: 183 VSYTTVINGLCKSGDLDSASRMLDQMTNRG--CTPDVVTYSSLIDGFCKGGEVERAMGLL 240

Query: 437 RFMLK 441
             MLK
Sbjct: 241 DSMLK 245



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 123/246 (50%), Gaps = 5/246 (2%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD   +  ++R  C    +  A +L+  M  +   PD   Y ++I G+  A     A  
Sbjct: 7   QPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFK 66

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
               M ++ C   +V Y+ ++DG+C+ G  + A++LL EM  +G  CSPN+ TY  +++ 
Sbjct: 67  FLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKG--CSPNIYTYNVIVEG 124

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +  + EA  +L+ M   G  P+ VT ++ IKG C    +DEA + + ++     V S
Sbjct: 125 LCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVS 184

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++++  L ++  L  A ++  +M   G  PD +  S +I   C GG+V     L +
Sbjct: 185 ---YTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLD 241

Query: 401 DIEKIG 406
            + K+G
Sbjct: 242 SMLKLG 247



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 143/310 (46%), Gaps = 6/310 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC   V     + +   K      AM +L  M +   RP+ + YN+++      G +  A
Sbjct: 212 GCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKA 271

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           ++++  M      PD+++Y + I G C A R++ A  +F  M   GC  N  +YS L++ 
Sbjct: 272 EDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEE 331

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR-MEALGC 302
           +C+   ++ A+ L+ E  +E      +++ YT ++   C  G   EA  +  + ++   C
Sbjct: 332 LCKKKELDDAITLV-EQAREKYQIV-DILLYTVLLDGLCKGGRFDEACALFSKVLDEKIC 389

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+    + ++   C    +D+A Q I K +   +  +   ++ LV  L    RL +AE 
Sbjct: 390 EPDVFFYNVMLDSHCKRRQIDKALQ-IHKQMLERNCCNVVTWNILVHGLCVDDRLSDAET 448

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           +   M+  G  PD +    ++  +C  G+      L+E+  K G +  V +  +S L+ G
Sbjct: 449 MLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVT--YSALITG 506

Query: 423 LCRKNHSVEA 432
           L  +N + EA
Sbjct: 507 LVHENMAEEA 516



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 5/234 (2%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I  LC KA    +A  V  +M E    P+   Y+ ++   C+K ++  A  L++      
Sbjct: 294 IDGLC-KAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKY 352

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              DI+ Y  ++ G C  GR ++AC LF KV+    C  ++  Y+ +LD  C+   +++A
Sbjct: 353 QIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKA 412

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L++  +M +   +C  NVVT+  ++   C    + +A  +L  M   G  P+ VT  TL+
Sbjct: 413 LQIHKQMLER--NCC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLV 469

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
              C  G    A +L ++ V GG V     YS+L+  LV     +EA  LF+K+
Sbjct: 470 DAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL 523



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 96/197 (48%), Gaps = 5/197 (2%)

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C P+  T+  +++  C    +++A  +L RM+ +GC P+    + LI G+    +  +A+
Sbjct: 6   CQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAF 65

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           + + ++V    + +   Y+++V  L +  R K+A KL  +M   G  P+    +V++  L
Sbjct: 66  KFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGL 125

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           C   ++ E   + E++   G+   V +  ++  + GLC+ +   EA K   F+ +  +  
Sbjct: 126 CEERKLDEAKKMLEEMAVRGYFPDVVT--YNSFIKGLCKCDRVDEARK---FLARMPVTP 180

Query: 447 QGPYVDKIVEHLKKSGD 463
                  ++  L KSGD
Sbjct: 181 DVVSYTTVINGLCKSGD 197



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 115/268 (42%), Gaps = 14/268 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R  +  ++   V++   E+ C   V    V+ +   K R  ++A+ + ++M E + 
Sbjct: 368 CKGGRFDEACALFSKVLD---EKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNC 424

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
             + + +N ++   C    +  A+ ++  M      PD +TY +++   C  G+   A  
Sbjct: 425 -CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALE 483

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF+   + GC  ++V YSAL+ G+      E A  L  ++         +V  + ++I  
Sbjct: 484 LFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL---------DVALWNAMILG 534

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG-NLDEAYQLIDKVVAGGSVS 339
           +   G     L +   +      PN  T    I G  V+  +L +A  L D+ V GG   
Sbjct: 535 YAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFP 594

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKM 367
                ++L+    +   L+EA ++F  M
Sbjct: 595 DLFVANTLIDVFAKCGDLEEARRIFYSM 622


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 155/295 (52%), Gaps = 4/295 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ +LR M      P+ + YN ++  F   G++  A+ L+  M    L P+++T+ SM+
Sbjct: 168 EALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMV 227

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C AG++EDA  +F  M R G A + V+Y+ L+ G C+ G    AL +  EM ++G  
Sbjct: 228 NGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKG-- 285

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+VVT+TS+I + C  G ++ A+ ++ +M   G   N VT + LI GFC +G LD+A 
Sbjct: 286 IMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDAL 345

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
             +  +       S  CY++L+       R+ EA +L  +M A G+KPD +  S +I   
Sbjct: 346 LAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAY 405

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           C        F L + + + G L   D+  +S L+  LC +    +A  L + M+K
Sbjct: 406 CKNCDTHSAFELNQQMLEKGVLP--DAITYSSLIRVLCEEKRLSDAHVLFKNMIK 458



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 157/307 (51%), Gaps = 5/307 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  +C+  ++  +A  V  +M    L PD + YN ++  +C+ G    A  +  
Sbjct: 221 VTFNSMVNGMCKAGKM-EDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFA 279

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD++T+ S+I   C AG LE A  L + M+  G   N V ++AL+DG C+ G
Sbjct: 280 EMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKG 339

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ AL  +  M +      P+VV Y ++I  +C  G M EA  +L  MEA G  P+ VT
Sbjct: 340 FLDDALLAVRGMRQ--CRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVT 397

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            ST+I  +C   +   A++L  +++  G +     YSSL+  L   KRL +A  LF  M+
Sbjct: 398 YSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMI 457

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G++PD    + +I   C  G V     L++ + K G L  V +  +SVL+ GL +   
Sbjct: 458 KLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVT--YSVLINGLSKSAR 515

Query: 429 SVEAAKL 435
           ++EA +L
Sbjct: 516 AMEAQQL 522



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 173/348 (49%), Gaps = 46/348 (13%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA  ++EA+ V  +M +  + PD + + ++I + C+ G++  A  L++ M    L  + +
Sbjct: 267 KAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEV 326

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T+ ++I GFC  G L+DA    + M++     ++V Y+AL++G C +G M+ A ELL EM
Sbjct: 327 TFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEM 386

Query: 261 EKEG----------------GDCS-----------------PNVVTYTSVIQIFCGKGMM 287
           E +G                 +C                  P+ +TY+S+I++ C +  +
Sbjct: 387 EAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRL 446

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            +A  +   M  LG  P+  T ++LI G C EGN++ A  L DK+V  G +     YS L
Sbjct: 447 SDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVL 506

Query: 348 VVELVRTKRLKEAEKLFSKM-----LASGVKPDGLACSVMIRELCLGGQVLEGFC---LY 399
           +  L ++ R  EA++L  K+     + +  K D L       EL     +L+GFC   L 
Sbjct: 507 INGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLM 566

Query: 400 EDIEKI--GFLS---SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            + +K+    L    ++D  ++SVL+ G CR  + ++A    + ML++
Sbjct: 567 NEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQR 614



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 124/242 (51%), Gaps = 7/242 (2%)

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   +++AY+A+L  +    S+  A      M  +G   +PNV TY  +I+  CG+G  K
Sbjct: 111 GYVPSVLAYNAVLLALSD-ASLTSARRFFDSMLSDG--VAPNVYTYNILIRALCGRGHRK 167

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           EAL IL  M   GC PN VT +TL+  F   G +D A +L+  ++ GG   +   ++S+V
Sbjct: 168 EALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMV 227

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             + +  ++++A K+F +M+  G+ PDG++ + ++   C  G   E   ++ ++ + G +
Sbjct: 228 NGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIM 287

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG--DEEL 466
             V +   + L+  +C+  +   A  L R M ++ + +       +++   K G  D+ L
Sbjct: 288 PDVVT--FTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDAL 345

Query: 467 IT 468
           + 
Sbjct: 346 LA 347



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 22/250 (8%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A  + ++M E  + PD I Y+++IR+ CE+  +  A  L K M  + L PD  TY S+
Sbjct: 412 HSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSL 471

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C  G +E A  L   M + G   ++V YS L++G+ +      A +LL ++  E  
Sbjct: 472 IDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE-- 529

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  P    Y +++   C K  +K  L                    L+KGFC++G ++EA
Sbjct: 530 EPIPANTKYDALMHC-CRKAELKSVLA-------------------LLKGFCMKGLMNEA 569

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            ++   ++       G  YS L+    R   + +A     +ML  G  P+  +   +IR 
Sbjct: 570 DKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRG 629

Query: 386 LCLGGQVLEG 395
           L   G V+E 
Sbjct: 630 LFENGMVVEA 639



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 60/126 (47%)

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           L NEA  V + M + +   D  +Y+ +I   C  G+++ A    K M      P+  + +
Sbjct: 565 LMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTI 624

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S+I+G    G + +A  + + +      A+  A  AL+D     G+++  L++L  M K+
Sbjct: 625 SLIRGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKD 684

Query: 264 GGDCSP 269
           G   SP
Sbjct: 685 GLLPSP 690


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 143/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    ++PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P++VTY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 279 LPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
               ++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 339 HRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G + SV
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSV 422



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 130/274 (47%), Gaps = 15/274 (5%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+Y+ L++G  RLG ++   
Sbjct: 138 YPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 197

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M +A  + D M   G  PN VT +TLI 
Sbjct: 198 RLKSAMHASG--VHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLID 255

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++   +     Y++L+  L +   LK+A  L  +M   G+KP
Sbjct: 256 GHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKP 315

Query: 375 DGLACSVMIRELCLGGQVLEGF-----CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           D +  + +I   C  G +   F      + E+I        +D   ++ L+ GLC++  S
Sbjct: 316 DKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIR-------LDDVAYTALISGLCQEGRS 368

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V+A K+ R ML   +         I+    K GD
Sbjct: 369 VDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGD 402



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 8/223 (3%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVL 152
           S + N  C+ S++     +  +++E    +G V  SV    +I   C K    + AM + 
Sbjct: 216 SVLINGLCKESKMDDANKLFDEMLE----KGLVPNSVTFTTLIDGHC-KNGWVDLAMEIY 270

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           ++M    L PD + YN +I   C+KGD+  A +L+  M +  L PD ITY ++I G C  
Sbjct: 271 KQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKE 330

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G L+ A    K+M +     + VAY+AL+ G+C+ G    A ++L EM   G    P+  
Sbjct: 331 GDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG--LKPDTR 388

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           TYT +I  FC KG + +   +L  M+  G  P+ VT + L+ G
Sbjct: 389 TYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 114/215 (53%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M E  L P+++ +  +I   C+ G +  A E+ K M   
Sbjct: 218 LINGLCKESKM-DDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQ 276

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD++TY ++I G C  G L+ A  L   M   G   + + Y+ L+DG C+ G ++ A
Sbjct: 277 SLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTA 336

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E    M +E  +   + V YT++I   C +G   +A  +L  M ++G  P+  T + +I
Sbjct: 337 FEHRKMMIQE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMII 394

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G V S   Y+ L+
Sbjct: 395 NEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 118/281 (41%), Gaps = 22/281 (7%)

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVM---KRHGCAANLVA---------------YSALLD 242
           +Y +MI   C+     +A  L +V+   K  G A+ + A               +S L+ 
Sbjct: 21  SYCAMIHFLCSHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 80

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
               LG +  A++    + +E   C P   T   V++        K   G  + +   G 
Sbjct: 81  AYLELGFLRDAIDCY-RLTREHKFCVP-FDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 138

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
             +    + L+  FC EG++  A  + D +   G   S   Y++L+   +R   L E  +
Sbjct: 139 PASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           L S M ASGV PD    SV+I  LC   ++ +   L++++ + G +   +S   + L+ G
Sbjct: 199 LKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVP--NSVTFTTLIDG 256

Query: 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            C+      A ++ + ML + +       + ++  L K GD
Sbjct: 257 HCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGD 297


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 209/424 (49%), Gaps = 25/424 (5%)

Query: 47  EKTLATVKAKLDSTCVIEVL-HRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSR 105
           ++ L++    L  T V + L H   P+++ +   FF W   +  + H+   Y    E+  
Sbjct: 73  DELLSSFTTSLSKTTVFQTLRHIKVPTKAFL---FFNWIH-EKGFSHNPQTYFIMLEILG 128

Query: 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----ARLANEAMWVLRKMPEFDLR 161
            ++N +I  + + +  E+     VK+    FN   +    A L  E++ +   M    + 
Sbjct: 129 REKNLNIARNFLYSI-EKRSNGEVKLEDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVS 187

Query: 162 PDTIIYNNVIRLFCEKGDMIAA----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           P  + +N+V+ +  ++G    A    DE++K  G+    PD  TY  +I+GFC    +++
Sbjct: 188 PGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGV---KPDTYTYNILIRGFCKNSMVDE 244

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
               FK M    C  ++V Y+ L+DG+CR G ++ A  L+  M K+  D SP+VVTYT++
Sbjct: 245 GFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTL 304

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA-GG 336
           I+ +C K  + EAL IL+ M   G  PN VT +TLIKG C     D+  ++++++   GG
Sbjct: 305 IRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGG 364

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
           S+     +++L+        L EA K+F  M    V  D  + SV+IR LC  G   +  
Sbjct: 365 SIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAE 424

Query: 397 CLYEDI-EKIGFLSSVD----SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV 451
            L++++ EK   LSS      +  +  +   LC    + +A ++ R ++K+    Q P  
Sbjct: 425 MLFDELFEKEILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGT--QDPLS 482

Query: 452 DKIV 455
            +IV
Sbjct: 483 YQIV 486



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 157/331 (47%), Gaps = 13/331 (3%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG--LIDLYPD 198
           K  + +E  +  ++M  FD  PD + YN ++   C  G +  A  L+ GM     DL PD
Sbjct: 238 KNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPD 297

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++TY ++I+G+C    +++A  + + M   G   N+V Y+ L+ G+C     ++  E+L 
Sbjct: 298 VVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILE 357

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +M+ +GG   P+  T+ ++I   C  G + EA  + + M+ L  + +  + S LI+  C 
Sbjct: 358 QMKGDGGSI-PDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQ 416

Query: 319 EGNLDEAYQLIDKVV-------AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           +G+  +A  L D++        + G       Y  +   L    + K+AE++  +++  G
Sbjct: 417 KGDYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRG 476

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
            + D L+  ++I   C  G    G+ L   + +  FL   D DI+  L+ G  RK+  + 
Sbjct: 477 TQ-DPLSYQIVILGHCKEGSYENGYGLLVWMLRRDFLP--DIDIYDYLIDGFLRKDKPLL 533

Query: 432 AAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           A +    MLK     Q      I+  L + G
Sbjct: 534 AKETLEKMLKSSYKPQTSTWHSILNRLLEQG 564



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 115/301 (38%), Gaps = 47/301 (15%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA----DELMKGMGLIDLY----- 196
           +EA  V   M + ++  D+  Y+ +IR  C+KGD   A    DEL +   L+  Y     
Sbjct: 386 DEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPL 445

Query: 197 --------------------------------PDIITYVSMIKGFCNAGRLEDACGLFKV 224
                                            D ++Y  +I G C  G  E+  GL   
Sbjct: 446 AASYKCMFQYLCENGKTKKAERVLRQLMKRGTQDPLSYQIVILGHCKEGSYENGYGLLVW 505

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M R     ++  Y  L+DG  R      A E L +M K      P   T+ S++     +
Sbjct: 506 MLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLK--SSYKPQTSTWHSILNRLLEQ 563

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + E+ G++  M       N    +  ++     G  D+A+++ + +   G        
Sbjct: 564 GCVHESAGVIVMMLERNIRQNINFSTKCLQLLFDRGLQDKAFKITELIYKNGFCVK---M 620

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL-YEDIE 403
             +V  L   +R  EA KL    L +    D   C+++I +LC   +  E F L YE ++
Sbjct: 621 DEVVQFLCNKRRALEACKLLLFSLKNNENIDIGLCNIVILDLCKLNKASEAFSLCYELVD 680

Query: 404 K 404
           K
Sbjct: 681 K 681



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 106/273 (38%), Gaps = 26/273 (9%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA---MWVL 152
           M+   CE  + K+   ++  +++     G    +    VI   C++    N     +W+L
Sbjct: 452 MFQYLCENGKTKKAERVLRQLMK----RGTQDPLSYQIVILGHCKEGSYENGYGLLVWML 507

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           R+    D  PD  IY+ +I  F  K   + A E ++ M      P   T+ S++      
Sbjct: 508 RR----DFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQTSTWHSILNRLLEQ 563

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G + ++ G+  +M       N+   +  L  +   G  ++A + + E+  + G C    V
Sbjct: 564 GCVHESAGVIVMMLERNIRQNINFSTKCLQLLFDRGLQDKAFK-ITELIYKNGFC----V 618

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI-----STLIKGFCVEGNLDEAYQ 327
               V+Q  C K    EA  +L     L    N   I     + +I   C      EA+ 
Sbjct: 619 KMDEVVQFLCNKRRALEACKLL-----LFSLKNNENIDIGLCNIVILDLCKLNKASEAFS 673

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           L  ++V  G      C + LV  L    R +EA
Sbjct: 674 LCYELVDKGLHQDLICLNDLVAALEAGGRTEEA 706


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 167/327 (51%), Gaps = 6/327 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V++   +EG    V    ++ N LC+  +L  EA  +L +M E    PD   +N +I 
Sbjct: 310 LKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQL-EEAKGILNQMVERGCLPDITTFNTLIV 368

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C    +  A +L + + L  L PD+ T+  +I   C  G  + A  LF+ MK  GC  
Sbjct: 369 ALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTP 428

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           + V Y+ L+D +C LG + +AL+LL EME  G  C  + VTY ++I   C K  ++EA  
Sbjct: 429 DEVTYNTLIDNLCSLGKLGKALDLLKEMESAG--CPRSTVTYNTIIDGLCKKMRIEEAEE 486

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D+M+  G + N +T +TLI G C +  +D+A QLI ++++ G   +   Y+S++    
Sbjct: 487 VFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYC 546

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +   +K+A  +   M A+G + D +    +I  LC  G+      L   +   G  ++  
Sbjct: 547 KQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPK 606

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +  ++ ++  L R+N++ +A  L R M
Sbjct: 607 A--YNPVIQSLFRRNNTRDAMNLFREM 631



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 172/333 (51%), Gaps = 5/333 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   + + A+ V+  M +    PD   YN V+   C+ G +  A  ++  M      P
Sbjct: 300 LCQNGHVGH-ALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLP 358

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI T+ ++I   C+  RLE+A  L + +   G + ++  ++ L++ +C++G  + AL L 
Sbjct: 359 DITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLF 418

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM+  G  C+P+ VTY ++I   C  G + +AL +L  ME+ GC  + VT +T+I G C
Sbjct: 419 EEMKSSG--CTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLC 476

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +  ++EA ++ D++   G   +   +++L+  L + KR+ +A +L S+M++ G++P+ +
Sbjct: 477 KKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNI 536

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + ++   C  G + +   + + +   GF   VD   +  L+ GLC+   +  A KL R
Sbjct: 537 TYNSILTHYCKQGDIKKAADILQTMTANGF--EVDVVTYGTLINGLCKAGRTQVALKLLR 594

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            M  K +       + +++ L +  +     NL
Sbjct: 595 GMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNL 627



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 172/346 (49%), Gaps = 11/346 (3%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
           Y H   + N   E S++K   ++  ++ E   +   V    +MK    LC +A     A+
Sbjct: 153 YNH---LLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKA---LC-RAHQVRTAV 205

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            +L +M    + PD   +  +++ F E+G + AA  +   M  +   P  +T   +I G+
Sbjct: 206 LMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGY 265

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C  GR+EDA G  +    +G   + + Y+  ++G+C+ G +  AL+++  M +EG D  P
Sbjct: 266 CKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHD--P 323

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +V TY  V+   C  G ++EA GIL++M   GC P+  T +TLI   C    L+EA  L 
Sbjct: 324 DVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLA 383

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            +V   G       ++ L+  L +    + A +LF +M +SG  PD +  + +I  LC  
Sbjct: 384 RQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSL 443

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G++ +   L +++E  G   S  +  ++ ++ GLC+K    EA ++
Sbjct: 444 GKLGKALDLLKEMESAGCPRSTVT--YNTIIDGLCKKMRIEEAEEV 487



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 162/367 (44%), Gaps = 44/367 (11%)

Query: 86  LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCE 140
           +Q  +    F YN      C+  ++++   I+  +VE     GC+  +     +I  LC 
Sbjct: 317 VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVE----RGCLPDITTFNTLIVALCS 372

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
             RL  EA+ + R++    L PD   +N +I   C+ GD   A  L + M      PD +
Sbjct: 373 GNRL-EEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEV 431

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY ++I   C+ G+L  A  L K M+  GC  + V Y+ ++DG+C+   +E A E+  +M
Sbjct: 432 TYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQM 491

Query: 261 EKEG-------------GDC--------------------SPNVVTYTSVIQIFCGKGMM 287
           + +G             G C                     PN +TY S++  +C +G +
Sbjct: 492 DLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDI 551

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           K+A  IL  M A G   + VT  TLI G C  G    A +L+  +   G  ++   Y+ +
Sbjct: 552 KKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPV 611

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIG 406
           +  L R    ++A  LF +M   G  PD     ++ R LC  GG + E F    ++   G
Sbjct: 612 IQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKG 671

Query: 407 FLSSVDS 413
           F+    S
Sbjct: 672 FIPEFSS 678



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 158/312 (50%), Gaps = 6/312 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM-WVLRKM-PEFDLRPDTIIYNNVIRL 173
           +V   + EG  V V ++        + +L  +A+  VL ++ P F ++ DT++YN+++ +
Sbjct: 100 LVTEMRREGHQVRVGVVHSFLESYARQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNV 159

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             E   M   + +   MG   + PD++T+ +++K  C A ++  A  + + M   G A +
Sbjct: 160 LVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPD 219

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              ++ L+ G    GS++ AL +   M + G  CSP  VT   +I  +C  G +++ALG 
Sbjct: 220 ETTFTTLMQGFVEEGSIKAALRVKARMLEMG--CSPTKVTVNVLINGYCKLGRVEDALGY 277

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           + +  A G  P+++T +T + G C  G++  A +++D +V  G       Y+ +V  L +
Sbjct: 278 IQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 337

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             +L+EA+ + ++M+  G  PD    + +I  LC G ++ E   L   +   G   S D 
Sbjct: 338 NGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGL--SPDV 395

Query: 414 DIHSVLLLGLCR 425
              ++L+  LC+
Sbjct: 396 YTFNILINALCK 407


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 160/317 (50%), Gaps = 5/317 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++    +I  LC + ++  EA+ +  +M      P+ I YN VI   C+ G+ I A  + 
Sbjct: 166 AITFNTLINGLCNEGKIK-EAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVF 224

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M      P+++TY ++I   C    + +A      M   G   ++V Y+ +L G C L
Sbjct: 225 RKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSL 284

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +  A  L  EM   G +  P+ VT+  ++   C +GM+ EA  + + M   G  PN  
Sbjct: 285 GQLNEATRLFKEMV--GRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAY 342

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + L+ G+C+   +DEA +++  ++  G   +   Y+ L+    ++KR+ EA++L S+M
Sbjct: 343 TYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEM 402

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
               + PD +  S +++ LC  G+  E   L++++   G L   D   +S+LL G C+  
Sbjct: 403 SEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLP--DLMAYSILLDGFCKHG 460

Query: 428 HSVEAAKLARFMLKKRI 444
           H  EA KL + M ++RI
Sbjct: 461 HLDEALKLLKEMHERRI 477



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 166/346 (47%), Gaps = 40/346 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LC K RL NEA+  L +M +  + PD + YN ++  FC  G +  A  L K M   
Sbjct: 242 IIDSLC-KDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGR 300

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ PD +T+  ++ G C  G + +A  + + M   G   N   Y+AL+DG C    M+ A
Sbjct: 301 NVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEA 360

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +++LG M  +G  C+PN+ +Y  +I  +C    M EA  +L  M      P+ VT STL+
Sbjct: 361 IKVLGIMIGKG--CAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLM 418

Query: 314 K-----------------------------------GFCVEGNLDEAYQLIDKVVAGGSV 338
           +                                   GFC  G+LDEA +L+ ++      
Sbjct: 419 QGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIK 478

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y+ L+  +    +L+ A++LFSK+ A G++PD    +VMI+ L   G   E +  
Sbjct: 479 PNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEF 538

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +  +E  GFL   DS  ++V++ G  +   S  A +L   M+ KR 
Sbjct: 539 FRKMEDDGFLP--DSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRF 582



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 166/360 (46%), Gaps = 32/360 (8%)

Query: 85  ALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL 144
           AL S YR           M R+   PS    VVE  K  G +   K      +LC +  L
Sbjct: 80  ALTSFYR-----------MVRMNPRPS----VVEFGKFLGSIAKKKQYSSAVSLCNQMDL 124

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
                        F +  +    N +I   C    +  A  +M  M  + + PD IT+ +
Sbjct: 125 -------------FGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNT 171

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G CN G++++A GLF  M   G   N+++Y+ +++G+C+ G+   A+ +  +ME+  
Sbjct: 172 LINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNR 231

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           G   PNVVTY ++I   C   ++ EA+  L  M   G  P+ VT +T++ GFC  G L+E
Sbjct: 232 G--KPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNE 289

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A +L  ++V    +     ++ LV  L +   + EA  +   M   G +P+    + ++ 
Sbjct: 290 ATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMD 349

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             CL  Q+ E   +   +   G   ++ S  +++L+ G C+     EA +L   M +K +
Sbjct: 350 GYCLHNQMDEAIKVLGIMIGKGCAPNLSS--YNILINGYCKSKRMNEAKRLLSEMSEKNL 407



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 110/212 (51%), Gaps = 2/212 (0%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  ++    ++ N   K++  NEA  +L +M E +L PDT+ Y+ +++  C+ G    
Sbjct: 370 KGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPRE 429

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L K M    L PD++ Y  ++ GFC  G L++A  L K M       N++ Y+ L+ 
Sbjct: 430 ALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIR 489

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+   G +E A EL  ++  +G    P++ TY  +I+    +G+  EA     +ME  G 
Sbjct: 490 GMFIAGKLEVAKELFSKLSADG--IRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGF 547

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            P+  + + +I+GF    +   A QLID++V 
Sbjct: 548 LPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVG 579



 Score = 45.1 bits (105), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 276 SVIQIFCGKGM-------MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           S+ Q  CG G        + +AL    RM  +   P+ V     +     +     A  L
Sbjct: 59  SLPQKHCGFGSNTSNDISIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSL 118

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            +++   G   +    + L+  L R   +  A  +  KM   G++PD +  + +I  LC 
Sbjct: 119 CNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCN 178

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
            G++ E   L+ ++   G   +V S  ++ ++ GLC+  +++ A ++ R M + R
Sbjct: 179 EGKIKEAVGLFNEMVWSGHEPNVIS--YNTVINGLCKNGNTIMAVRVFRKMEQNR 231


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 158/297 (53%), Gaps = 10/297 (3%)

Query: 148 AMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           AM +LR+M +   + P   +YN  +   C+ G +  A E++K M      PD++T+ ++I
Sbjct: 37  AMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLI 96

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C AGRL++A  +   M+R G AANLV Y+ L++G+   G    A+ ++     +G  
Sbjct: 97  AGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVM-----QGMT 151

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEA 325
            +P+  TY ++I  FC  G +  A G L+ M +  GC+P+  T S LI G C   NL +A
Sbjct: 152 TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKA 211

Query: 326 YQLIDKVVA-GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
            +L+ +++      +S   +++LV    + + L  A +L S ML  G  PD +  S +I 
Sbjct: 212 DELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIID 271

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            LC  G V +GF L E +   G     D   ++VL+ GLC+    VEA +L + ML+
Sbjct: 272 GLCRCGDVDKGFALLEKMVSRG--CKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLE 326



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 162/334 (48%), Gaps = 15/334 (4%)

Query: 60  TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN----RACEMSRIKQNPSIIID 115
           T  + V   C   + Q  +        Q     +  MYN      C+  ++ +     ++
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPE----AME 75

Query: 116 VVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           VV+  K+  C   V     +I  LC+  RL +EA  VL +M       + + YN +I   
Sbjct: 76  VVKNMKDGACKPDVVTFNTLIAGLCKAGRL-DEAQQVLDEMERSGFAANLVTYNTLINGL 134

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK-RHGCAAN 233
              G    A  +M+GM      PD  TY ++I GFC +G ++ A G  + MK R GC+ +
Sbjct: 135 SSAGRSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              YS L++G+C+  ++ +A ELL EM     DC  +VV + +++  +C    +  A  +
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQEMIGRK-DCCASVVAFNTLVDGYCKAQDLDRAREL 250

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L  M   GCAP+ VT ST+I G C  G++D+ + L++K+V+ G       Y+ LV  L +
Sbjct: 251 LSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCK 310

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
             ++ EA +L  +ML  G  P+ +  S++   LC
Sbjct: 311 AGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLC 344



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 136/270 (50%), Gaps = 7/270 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++  +  G   ++     + N    A  + EA+ V++ M      PDT  YN +I  FC
Sbjct: 111 VLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTYNAIIHGFC 167

Query: 176 EKGDMIAADELMKGMGL-IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM-KRHGCAAN 233
           + G++  A   ++ M       PD  TY  +I G C +  L  A  L + M  R  C A+
Sbjct: 168 KSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCAS 227

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +VA++ L+DG C+   ++RA ELL  M + G  C+P+VVTY+++I   C  G + +   +
Sbjct: 228 VVAFNTLVDGYCKAQDLDRARELLSSMLEHG--CAPDVVTYSTIIDGLCRCGDVDKGFAL 285

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L++M + GC P+ VT + L+ G C  G + EA +L+ +++  G   +   YS +   L +
Sbjct: 286 LEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCK 345

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
             +L  A  L + +   G   D +A   ++
Sbjct: 346 IDKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 5/197 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           PDT  Y+ +I   C+  ++  ADEL++ M G  D    ++ + +++ G+C A  L+ A  
Sbjct: 190 PDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARE 249

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M  HGCA ++V YS ++DG+CR G +++   LL +M   G  C P+VVTYT ++  
Sbjct: 250 LLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG--CKPDVVTYTVLVTG 307

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G M EA  ++ RM   GC PN VT S +  G C    LD A  L+  +   G V+ 
Sbjct: 308 LCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTD 367

Query: 341 GGCYSSLVVELVRTKRL 357
              + +L++ +   KRL
Sbjct: 368 VVAFETLLLSV--KKRL 382



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 107/208 (51%), Gaps = 5/208 (2%)

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y  L+   C  G ++ A++LL EME++ G  +P    Y   +   C  G + EA+ ++ 
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPG-MAPTPSMYNFFVHALCKSGKVPEAMEVVK 78

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+   C P+ VT +TLI G C  G LDEA Q++D++   G  ++   Y++L+  L    
Sbjct: 79  NMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAG 138

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R  EA  +   M  +   PD    + +I   C  G++   +   E++++    S  D+  
Sbjct: 139 RSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSP-DTFT 194

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           +S+L+ GLC+ ++  +A +L + M+ ++
Sbjct: 195 YSILINGLCKSSNLRKADELLQEMIGRK 222



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 3/171 (1%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + N  C+ S +++   ++ +++     + C  SV     + +   KA+  + A  +L 
Sbjct: 196 SILINGLCKSSNLRKADELLQEMI---GRKDCCASVVAFNTLVDGYCKAQDLDRARELLS 252

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M E    PD + Y+ +I   C  GD+     L++ M      PD++TY  ++ G C AG
Sbjct: 253 SMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAG 312

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           ++ +AC L K M   GC  N V YS + DG+C++  ++ A +LL  +  +G
Sbjct: 313 KMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           Y +A ++ R ++       ++ +  E GC   V     I +   +    ++   +L KM 
Sbjct: 238 YCKAQDLDRARE-------LLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMV 290

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
               +PD + Y  ++   C+ G M+ A  L+K M      P+ +TY  +  G C   +L+
Sbjct: 291 SRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLD 350

Query: 217 DACGLFKVMKRHGCAANLVAYSALL 241
            A  L   ++  G   ++VA+  LL
Sbjct: 351 MANDLLTSIRDKGRVTDVVAFETLL 375


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 163/296 (55%), Gaps = 4/296 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +AM +L +M +   +PD + YN +I   C++G +  A + +  M L    P++IT+  ++
Sbjct: 262 QAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIIL 321

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +  C+ GR  DA  L   M R GC+ ++V ++ L++ +CR   + RA+++L +M K G  
Sbjct: 322 RSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG-- 379

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PN ++Y  ++  FC +  M  A+  L+ M + GC P+ VT +TL+   C +G  D A 
Sbjct: 380 CMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAV 439

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           ++++++ + G       Y++++  L +  + + A +L  +M   G+KPD +  S ++R L
Sbjct: 440 EILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGL 499

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              G+V E   ++ D+E +    S  +  ++ ++LGLC+   +  A     +M++K
Sbjct: 500 GCEGKVDEAIKIFHDMEGLSIKPSAVT--YNAIMLGLCKAQQTSRAIDFLAYMVEK 553



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 148/282 (52%), Gaps = 9/282 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD I   ++IR FC  G    A  +M+ +      PD+ITY  +I G+C +G ++ A   
Sbjct: 140 PDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKA--- 196

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG-EMEKEGGDCSPNVVTYTSVIQI 280
            +V++R   A ++V Y+ +L  +C  G ++ A+E+L  +M++E   C P+V+TYT +I+ 
Sbjct: 197 LQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRE---CYPDVITYTILIEA 253

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C    + +A+ +LD M   GC P+ VT + LI G C EG LDEA + ++ +   G   +
Sbjct: 254 TCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPN 313

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ ++  +  T R  +AE+L + ML  G  P  +  +++I  LC    +     + E
Sbjct: 314 VITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLE 373

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            + K G +   +S  ++ LL G C++     A +    M+ +
Sbjct: 374 KMPKHGCMP--NSLSYNPLLHGFCQEKKMDRAIEYLEIMVSR 413



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 119/226 (52%), Gaps = 2/226 (0%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  SV    ++ N   + RL   A+ VL KMP+    P+++ YN ++  FC++  M  
Sbjct: 343 KGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDR 402

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E ++ M     YPDI+TY +++   C  G+ + A  +   +   GC+  L+ Y+ ++D
Sbjct: 403 AIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVID 462

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+ ++G  E A ELL EM ++G    P+++TY+++++    +G + EA+ I   ME L  
Sbjct: 463 GLTKVGKTEYAAELLEEMRRKG--LKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSI 520

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            P+ VT + ++ G C       A   +  +V  G   +   Y+ L+
Sbjct: 521 KPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILI 566



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 146/306 (47%), Gaps = 39/306 (12%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + +++  +++GC   V    V+ N +C++ RL +EA+  L  MP +  +P+ I +N ++R
Sbjct: 264 MKLLDEMRKKGCKPDVVTYNVLINGICKEGRL-DEAIKFLNNMPLYGCQPNVITHNIILR 322

Query: 173 LFCEKGDMIAADELMKGM--------------------------GLIDLY---------P 197
             C  G  + A+ L+  M                            ID+          P
Sbjct: 323 SMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMP 382

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + ++Y  ++ GFC   +++ A    ++M   GC  ++V Y+ LL  +C+ G  + A+E+L
Sbjct: 383 NSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEIL 442

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            ++  +G  CSP ++TY +VI      G  + A  +L+ M   G  P+ +T STL++G  
Sbjct: 443 NQLSSKG--CSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLG 500

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            EG +DEA ++   +       S   Y+++++ L + ++   A    + M+  G KP   
Sbjct: 501 CEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKA 560

Query: 378 ACSVMI 383
             +++I
Sbjct: 561 TYTILI 566



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 115/230 (50%), Gaps = 7/230 (3%)

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G LE+     + M   G   +++A ++L+ G CR G   +A  ++  +E  G    P+V+
Sbjct: 121 GELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGA--VPDVI 178

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TY  +I  +C  G + +AL +L+RM     AP+ VT +T+++  C  G L EA +++D+ 
Sbjct: 179 TYNVLIGGYCKSGEIDKALQVLERMSV---APDVVTYNTILRSLCDSGKLKEAMEVLDRQ 235

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +          Y+ L+        + +A KL  +M   G KPD +  +V+I  +C  G++
Sbjct: 236 MQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 295

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            E      ++   G   +V +  H+++L  +C     ++A +L   ML+K
Sbjct: 296 DEAIKFLNNMPLYGCQPNVIT--HNIILRSMCSTGRWMDAERLLADMLRK 343



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
           +LVR   L+E  K   +M+  G  PD +AC+ +IR  C  G+  +   + E +E  G + 
Sbjct: 116 KLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVP 175

Query: 410 SVDSDIHSVLLLGLCR 425
            V +  ++VL+ G C+
Sbjct: 176 DVIT--YNVLIGGYCK 189


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 158/297 (53%), Gaps = 10/297 (3%)

Query: 148 AMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           AM +LR+M +   + P   +YN  +   C+ G +  A E++K M      PD++T+ ++I
Sbjct: 37  AMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLI 96

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C AGRL++A  +   M+R G AANLV Y+ L++G+   G    A+ ++     +G  
Sbjct: 97  AGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVM-----QGMT 151

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEA 325
            +P+  TY ++I  FC  G +  A G L+ M +  GC+P+  T S LI G C   NL +A
Sbjct: 152 TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKA 211

Query: 326 YQLIDKVVA-GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
            +L+ +++      +S   +++LV    + + L  A +L S ML  G  PD +  S +I 
Sbjct: 212 DELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIID 271

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            LC  G V +GF L E +   G     D   ++VL+ GLC+    VEA +L + ML+
Sbjct: 272 GLCRCGDVDKGFALLEKMVSRG--CKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLE 326



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 162/334 (48%), Gaps = 15/334 (4%)

Query: 60  TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN----RACEMSRIKQNPSIIID 115
           T  + V   C   + Q  +        Q     +  MYN      C+  ++ +     ++
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPE----AME 75

Query: 116 VVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           VV+  K+  C   V     +I  LC+  RL +EA  VL +M       + + YN +I   
Sbjct: 76  VVKNMKDGACKPDVVTFNTLIAGLCKAGRL-DEAQQVLDEMERSGFAANLVTYNTLINGL 134

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK-RHGCAAN 233
              G    A  +M+GM      PD  TY ++I GFC +G ++ A G  + MK R GC+ +
Sbjct: 135 SSAGRSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              YS L++G+C+  ++ +A ELL EM     DC  +VV + +++  +C    +  A  +
Sbjct: 192 TFTYSILINGLCKSSNLRKADELLQEMIGRK-DCCASVVAFNTLVDGYCKAQDLDRAREL 250

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L  M   GCAP+ VT ST+I G C  G++D+ + L++K+V+ G       Y+ LV  L +
Sbjct: 251 LSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCK 310

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
             ++ EA +L  +ML  G  P+ +  S++   LC
Sbjct: 311 AGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLC 344



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 134/265 (50%), Gaps = 7/265 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++  +  G   ++     + N    A  + EA+ V++ M      PDT  YN +I  FC
Sbjct: 111 VLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTYNAIIHGFC 167

Query: 176 EKGDMIAADELMKGMGL-IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM-KRHGCAAN 233
           + G++  A   ++ M       PD  TY  +I G C +  L  A  L + M  R  C A+
Sbjct: 168 KSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCAS 227

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +VA++ L+DG C+   ++RA ELL  M + G  C+P+VVTY+++I   C  G + +   +
Sbjct: 228 VVAFNTLVDGYCKAQDLDRARELLSSMLEHG--CAPDVVTYSTIIDGLCRCGDVDKGFAL 285

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L++M + GC P+ VT + L+ G C  G + EA +L+ +++  G   +   YS +   L +
Sbjct: 286 LEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCK 345

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLA 378
             +L  A  L + +   G   D +A
Sbjct: 346 IDKLDMANDLLTSIRDKGRITDVVA 370



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 5/197 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           PDT  Y+ +I   C+  ++  ADEL++ M G  D    ++ + +++ G+C A  L+ A  
Sbjct: 190 PDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARE 249

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M  HGCA ++V YS ++DG+CR G +++   LL +M   G  C P+VVTYT ++  
Sbjct: 250 LLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG--CKPDVVTYTVLVTG 307

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G M EA  ++ RM   GC PN VT S +  G C    LD A  L+  +   G ++ 
Sbjct: 308 LCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITD 367

Query: 341 GGCYSSLVVELVRTKRL 357
              + +L++ +   KRL
Sbjct: 368 VVAFEALLLSV--KKRL 382



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 5/207 (2%)

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y  L+   C  G ++ A++LL EME++ G  +P    Y   +   C  G + EA+ ++  
Sbjct: 21  YFVLVRAHCLAGELQAAMDLLREMEQQPG-MAPTPSMYNFFVHALCKSGKVPEAMEVVKN 79

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M+   C P+ VT +TLI G C  G LDEA Q++D++   G  ++   Y++L+  L    R
Sbjct: 80  MKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGR 139

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
             EA  +   M  +   PD    + +I   C  G++   +   E++++    S  D+  +
Sbjct: 140 SGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSP-DTFTY 195

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKR 443
           S+L+ GLC+ ++  +A +L + M+ ++
Sbjct: 196 SILINGLCKSSNLRKADELLQEMIGRK 222



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 3/171 (1%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + N  C+ S +++   ++ +++     + C  SV     + +   KA+  + A  +L 
Sbjct: 196 SILINGLCKSSNLRKADELLQEMI---GRKDCCASVVAFNTLVDGYCKAQDLDRARELLS 252

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M E    PD + Y+ +I   C  GD+     L++ M      PD++TY  ++ G C AG
Sbjct: 253 SMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAG 312

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           ++ +AC L K M   GC  N V YS + DG+C++  ++ A +LL  +  +G
Sbjct: 313 KMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 54/120 (45%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E GC   V     I +   +    ++   +L KM     +PD + Y  ++   C+ G M+
Sbjct: 256 EHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMV 315

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  L+K M      P+ +TY  +  G C   +L+ A  L   ++  G   ++VA+ ALL
Sbjct: 316 EACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 173/337 (51%), Gaps = 20/337 (5%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F++N+A E           + +++     GC   +     + N LC++  + + A+ 
Sbjct: 194 HGLFLHNKASEA----------VALIDRMVARGCQPDLFTYGTVVNGLCKRGDI-DLALS 242

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L+KM +  +  + +IYN +I   C+   M  A +L   M    + PD+ TY S+I   C
Sbjct: 243 LLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLC 302

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N GR  DA  L   M       N+V +++L+D   + G +  A +L  EM +   D  PN
Sbjct: 303 NYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID--PN 360

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           +VTY S+I  FC    + EA  I   M +  C P+ VT +TLIKGFC    ++E  +L  
Sbjct: 361 IVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFR 420

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V +   Y++L+  L +      A+K+F KM++ GV PD +  S+++  LC  G
Sbjct: 421 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 480

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCR 425
           ++ +   ++E ++K    S ++ +I++  +++ G+C+
Sbjct: 481 KLEKALVVFEYLQK----SKMEPNIYTYNIMIEGMCK 513



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 157/306 (51%), Gaps = 5/306 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K +  ++A  +  KM    ++PD   YN++I   C  G    A  L+  M   
Sbjct: 262 IIDGLC-KYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIER 320

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+++T+ S+I  F   G+L +A  LF  M +     N+V Y++L++G C    ++ A
Sbjct: 321 KINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEA 380

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++   M  +  DC P+VVTY ++I+ FC    ++E + +   M   G   N VT +TLI
Sbjct: 381 QQIFTLMVSK--DCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 438

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           +G    G+ D A ++  K+V+ G       YS L+  L +  +L++A  +F  +  S ++
Sbjct: 439 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 498

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    ++MI  +C  G+V +G+ L+  +   G   +V   I++ ++ G CRK    EA 
Sbjct: 499 PNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV--IIYTTMISGFCRKGLKEEAD 556

Query: 434 KLARFM 439
            L R M
Sbjct: 557 ALFREM 562



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 151/316 (47%), Gaps = 29/316 (9%)

Query: 97  YNRACEMSRI-------KQNPSIII--DVVEAYKEEGCVVSVKMM--------------- 132
           Y R  + SR+       K NP+++    +++A+ +EG ++  + +               
Sbjct: 304 YGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVT 363

Query: 133 --KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
              +I   C   RL +EA  +   M   D  PD + YN +I+ FC+   +    EL + M
Sbjct: 364 YNSLINGFCMHDRL-DEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREM 422

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               L  + +TY ++I+G   AG  + A  +FK M   G   +++ YS LLDG+C+ G +
Sbjct: 423 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 482

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E+AL +   ++K      PN+ TY  +I+  C  G +++   +   +   G  PN +  +
Sbjct: 483 EKALVVFEYLQKS--KMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYT 540

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           T+I GFC +G  +EA  L  ++   G++   GCY++L+   +R      + +L  +M + 
Sbjct: 541 TMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSC 600

Query: 371 GVKPDGLACSVMIREL 386
           G   D    S++I  L
Sbjct: 601 GFVGDASTISMVINML 616



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 169/353 (47%), Gaps = 6/353 (1%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           ++I + E  +  G   +     ++ N  C +++L   A+ VL KM +    PD +  +++
Sbjct: 99  VVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLP-LALAVLGKMMKLGYEPDIVTLSSL 157

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +  +C    +  A  L+  M  +   PD +T+ ++I G     +  +A  L   M   GC
Sbjct: 158 LNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGC 217

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             +L  Y  +++G+C+ G ++ AL LL +MEK  G    NVV Y ++I   C    M +A
Sbjct: 218 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK--GKIEANVVIYNTIIDGLCKYKHMDDA 275

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             + ++ME  G  P+  T ++LI   C  G   +A +L+  ++      +   ++SL+  
Sbjct: 276 FDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDA 335

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             +  +L EAEKLF +M+   + P+ +  + +I   C+  ++ E   ++  +     L  
Sbjct: 336 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 395

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V +  ++ L+ G C+     E  +L R M ++ +       + +++ L ++GD
Sbjct: 396 VVT--YNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 446



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 6/229 (2%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA+   E M + R+M +  L  +T+ YN +I+   + GD   A ++ K M    + PDII
Sbjct: 408 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 467

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  ++ G C  G+LE A  +F+ +++     N+  Y+ +++G+C+ G +E   +L   +
Sbjct: 468 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSL 527

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G    PNV+ YT++I  FC KG+ +EA  +   M+  G  P+    +TLI+    +G
Sbjct: 528 SLKG--VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDG 585

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           +   + +LI ++ + G V       S+V+ ++   RL   EK + +ML+
Sbjct: 586 DKAASAELIKEMRSCGFVGDASTI-SMVINMLHDGRL---EKSYLEMLS 630



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 128/267 (47%), Gaps = 4/267 (1%)

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
           +P II +  ++       + +    L + M+  G   N   YS LL+  CR   +  AL 
Sbjct: 78  FPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALA 137

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           +LG+M K G +  P++VT +S++  +C    + EA+ ++D+M  +G  P+ VT +TLI G
Sbjct: 138 VLGKMMKLGYE--PDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHG 195

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
             +     EA  LID++VA G       Y ++V  L +   +  A  L  KM    ++ +
Sbjct: 196 LFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEAN 255

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  + +I  LC    + + F L+  +E  G    V +  ++ L+  LC      +A++L
Sbjct: 256 VVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFT--YNSLISCLCNYGRWSDASRL 313

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              M++++I       + +++   K G
Sbjct: 314 LSDMIERKINPNVVTFNSLIDAFAKEG 340



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 39/247 (15%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L+DA  LF  M +     +++ +S LL  I ++   +  + L  +M+  G     N  T
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG--IPHNHYT 118

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y+ ++  FC +  +  AL +L +M  LG  P+ VT+S+L+ G+C                
Sbjct: 119 YSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYC---------------- 162

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
                                KR+ EA  L  +M+  G KPD +  + +I  L L  +  
Sbjct: 163 -------------------HGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKAS 203

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
           E   L + +   G     D   +  ++ GLC++     A  L + M K +I       + 
Sbjct: 204 EAVALIDRMVARG--CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNT 261

Query: 454 IVEHLKK 460
           I++ L K
Sbjct: 262 IIDGLCK 268


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 149/275 (54%), Gaps = 5/275 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P    YN +I    ++GD+ AA  L + M    L PD +TY SMI G+   GRL+D   
Sbjct: 130 KPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVY 189

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F+ MK   C  +++ Y++L++  C+ G + + LE   EM++ G    PNVV+Y++++  
Sbjct: 190 FFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSG--LKPNVVSYSTLVDA 247

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC + MM++A+     M  +G  PN  T ++L+   C  GNL +A++L ++++  G   +
Sbjct: 248 FCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWN 307

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+  L   +R+KEAEKLF KM+ +GV P+  + + +I        +     L  
Sbjct: 308 VVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLN 367

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +++  G     D  ++   + GLC     +EAAK+
Sbjct: 368 ELKGRGI--QPDLLLYGTFIWGLCGLE-KIEAAKV 399



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 142/281 (50%), Gaps = 4/281 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++ ++   +M      PD I YN++I  FC+ G +    E  + M    L P++++Y ++
Sbjct: 185 DDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTL 244

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +  FC    ++ A   +  M+R G   N   Y++L+D  C++G++  A  L  EM + G 
Sbjct: 245 VDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGV 304

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +   NVVTYT++I   C    MKEA  +  +M   G  PN  + + LI GF    N+D A
Sbjct: 305 EW--NVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRA 362

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L++++   G       Y + +  L   ++++ A+ + ++M  +G+K + L  + ++  
Sbjct: 363 LELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDA 422

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
               G   EG  L E+++++    +V +    VL+ GLC+ 
Sbjct: 423 YFKSGNPTEGLHLLEEMQELDHEVTVVT--FCVLIDGLCKN 461



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 145/319 (45%), Gaps = 40/319 (12%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+   Y +++   C+ G++  A  L   M  + +  +++TY ++I G C+A R+++A  L
Sbjct: 271 PNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKL 330

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  M   G   NL +Y+AL+ G  +  +M+RALELL E++  G    P+++ Y + I   
Sbjct: 331 FGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG--IQPDLLLYGTFIWGL 388

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI------------ 329
           CG   ++ A  +++ M+  G   N +  +TL+  +   GN  E   L+            
Sbjct: 389 CGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTV 448

Query: 330 ------------DKVVAG------------GSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
                       +K+V+             G   +   Y++++  L +  ++K A  LF 
Sbjct: 449 VTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFE 508

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +M   G+ PD  A + ++      G +LE   L + + +IG    +D   ++ L+ G  +
Sbjct: 509 QMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGM--KLDLLAYTSLVWGFSQ 566

Query: 426 KNHSVEAAKLARFMLKKRI 444
            N   +A      M+ + I
Sbjct: 567 CNQLQKARSFLEEMIGEEI 585



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 130/279 (46%), Gaps = 5/279 (1%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+K+   +   +V A    G + ++     + +   KA+  + A+ +L ++    +
Sbjct: 319 CDAERMKEAEKLFGKMVTA----GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI 374

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD ++Y   I   C    + AA  +M  M    +  + + Y +++  +  +G   +   
Sbjct: 375 QPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLH 434

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L + M+       +V +  L+DG+C+   + +A++  G M  + G   PN   YT++I  
Sbjct: 435 LLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFG-LQPNAAVYTAMIDG 493

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +  +K A  + ++M   G  P+R   ++L+ G   +GN+ EA  L DK+   G    
Sbjct: 494 LCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLD 553

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
              Y+SLV    +  +L++A     +M+   + PD + C
Sbjct: 554 LLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEVLC 592


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 178/408 (43%), Gaps = 39/408 (9%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           ++  + IRFF WA  Q  Y H+   Y    ++         +  V   +KE G +++V  
Sbjct: 122 TKPDVAIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYS 181

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRP----------------------------- 162
              +        +  E +WV R+M E  + P                             
Sbjct: 182 SNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVME 241

Query: 163 ------DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
                 D + YN +I+ +CE G    A E +K M L ++ PD ITY+++I+     G  +
Sbjct: 242 NGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFD 301

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
              GL+  M   G       YS ++ G+C+ G       +   M  +G  C  NV  YT+
Sbjct: 302 SCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKG--CKANVAIYTA 359

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I      G M EA+ +  RM+  G  P+ VT   ++   C  G LDEA + ++     G
Sbjct: 360 LIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKG 419

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
              +   YSSL+  L ++ R+ EAE++F +M+  G  PD    + +I  L   G++ E  
Sbjct: 420 VAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEAL 479

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            L + +E  G   +V +  +++L+ GL R++ + EA  L   M+ K I
Sbjct: 480 ALSKRMEVDGCDQTVYT--YTILITGLFREHRNEEALTLWDLMIDKGI 525


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 198/437 (45%), Gaps = 58/437 (13%)

Query: 57  LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-------------- 102
           +D    + VL   F +  +M +R F WA  Q  +R S F++    E              
Sbjct: 79  VDPDLFVRVL-SSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWV 137

Query: 103 MSR-IKQNPSIIIDVVEAYKEEGCV---VSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           M R I  N   I+DV+      GCV   VSVK++ ++  +  K  +  + + V  KM + 
Sbjct: 138 MERVINANMHRIVDVLIG----GCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKS 193

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            L PD    N ++R+  +K  M  A E+ + MG   + P I+TY +++  +C  G+++  
Sbjct: 194 RLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQG 253

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-------------- 264
             L   M+R GCA N V Y+ L++G+ + G  E+A  L+GEM K G              
Sbjct: 254 LDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYG 313

Query: 265 -------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
                                 SP V TY S I   C  G M +A+  L  M A    P+
Sbjct: 314 YFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPD 373

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V+ +TLI G+C  GNL +A+ L D++ +     +   Y++L+  L R   L+ A++L  
Sbjct: 374 VVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKV 433

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +M+  G+ PD +  ++++   C  G +      ++++   G    +DS  ++  ++G  +
Sbjct: 434 EMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGL--ELDSYAYATRIVGELK 491

Query: 426 KNHSVEAAKLARFMLKK 442
              +  A  L   ML K
Sbjct: 492 LGDTSRAFSLQEEMLAK 508



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 166/366 (45%), Gaps = 48/366 (13%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN--EAM 149
           ++SF+Y   C++ R+      + D++ A      VVS   +  I+  C   RL N  +A 
Sbjct: 342 YNSFIYG-LCKLGRMSDAMQQLSDML-ANNLLPDVVSYNTL--IYGYC---RLGNLMKAF 394

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            +  ++    L P  + YN ++   C +G++  A +L   M    + PDI+TY  ++ G 
Sbjct: 395 LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGS 454

Query: 210 CNAGRLEDACGLFKVMKRHGC-----------------------------------AANL 234
           C  G L  A   F  M   G                                      +L
Sbjct: 455 CKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDL 514

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + Y+ ++DG+C+LG++E A ELL +M  +G    P+ VTYTS+I      G +++   I 
Sbjct: 515 IIYNVVVDGLCKLGNLEEASELLQKMVSDG--VIPDYVTYTSIIHAHLENGRLRKGREIF 572

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             M + G  P+ VT + LI G   +G L+ A+    ++   G + +   Y+SL+  L + 
Sbjct: 573 YEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKV 632

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
           +R+ +A   F++M+  G+ P+  + +++I E C  G   E   LY+ +   G     DS 
Sbjct: 633 RRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGV--QPDSC 690

Query: 415 IHSVLL 420
            HS LL
Sbjct: 691 THSALL 696



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 9/333 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  +++Q     +D++   +  GC  +     V+ N   K     +A  ++ +M +  L
Sbjct: 245 CKGGKVQQG----LDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGL 300

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +     YN +I  +  KG +  A  L + M L    P + TY S I G C  GR+ DA  
Sbjct: 301 KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQ 360

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
               M  +    ++V+Y+ L+ G CRLG++ +A  L  E+        P +VTY +++  
Sbjct: 361 QLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY--LFPTIVTYNTLLDG 418

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G ++ A  +   M   G AP+ VT + L+ G C  G+L  A +  D+++  G    
Sbjct: 419 LCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELD 478

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++ +V  ++      A  L  +MLA G  PD +  +V++  LC  G + E   L +
Sbjct: 479 SYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQ 538

Query: 401 DIEKIGFLS---SVDSDIHSVLLLGLCRKNHSV 430
            +   G +    +  S IH+ L  G  RK   +
Sbjct: 539 KMVSDGVIPDYVTYTSIIHAHLENGRLRKGREI 571



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 97/197 (49%), Gaps = 2/197 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD IIYN V+   C+ G++  A EL++ M    + PD +TY S+I      GRL     +
Sbjct: 512 PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREI 571

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  M   G   ++V Y+ L+ G    G +ERA     EM+++G    PNV+TY S+I   
Sbjct: 572 FYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKG--ILPNVITYNSLINGL 629

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C    M +A      M   G  PN+ + + LI   C  GN  EA  L  +++  G     
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDS 689

Query: 342 GCYSSLVVELVRTKRLK 358
             +S+L+ +L +  +L+
Sbjct: 690 CTHSALLKQLGKDCKLQ 706


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 207/426 (48%), Gaps = 15/426 (3%)

Query: 50  LATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN 109
           L+++   +  T V+  L R     S+  +RFF W   Q  + H+   Y    E+   ++N
Sbjct: 69  LSSLLITISKTTVLRTL-RLIKDPSK-ALRFFKWTQ-QKGFSHTPESYFIMLEILGRERN 125

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLC----EKARLANEAMWVLRKMPEFDLRPDTI 165
            ++  + + +  E+    +VK+    FN       +A L  E+M + + M    + P  +
Sbjct: 126 LNVARNFLFSI-EKHSKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVV 184

Query: 166 IYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
            +N+++ +  ++G    A E+   M G   + PD  TY  +I+GFC    +++    F+ 
Sbjct: 185 TFNSLMSILLKRGRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFRE 244

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+   C A++V Y+ L+DG+CR G +  A  L+  M K+    +PNVVTYT++I+ +C K
Sbjct: 245 MESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMK 304

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             ++EAL +L+ M + G  PN +T +TL+KG C    LD+   +++++ + G  S     
Sbjct: 305 QEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFT 364

Query: 345 SSLVVEL-VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI- 402
            + ++ L      L EA K+F  M    +  D  + S +IR LC  G       L++++ 
Sbjct: 365 FNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELF 424

Query: 403 EKIGFLSSVDSDI----HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
           EK   LS   S      ++ +   LC    + +A ++ R ++K+       Y   I+ H 
Sbjct: 425 EKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQDPQSYTTVIMGHC 484

Query: 459 KKSGDE 464
           K+   E
Sbjct: 485 KEGAYE 490



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 123/301 (40%), Gaps = 49/301 (16%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA----DELMKGMGLIDLY---PD 198
           +EA+ V   M +F +  D+  Y+ +IR  C+KGD   A    DEL +   L+  +   P 
Sbjct: 379 DEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPL 438

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
             +Y  + +  C  G+ + A  + + + + G   +  +Y+ ++ G C+ G+ E   ELL 
Sbjct: 439 AASYNPIFESLCEHGKTKKAERVIRQLMKRG-TQDPQSYTTVIMGHCKEGAYESGYELLM 497

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKG---MMKEAL----------------GILDRMEA 299
            M +   D  P++  Y  +I  F  K    + KE L                 +L ++  
Sbjct: 498 WMLRR--DFLPDIEIYDYLIDGFLQKDKPLLAKETLEKMLKSSYQPKTSTWHSVLAKLLE 555

Query: 300 LGCAPNRVTISTLIKGFCVEGNLD----------------EAYQLIDKVVAGGSVSSGGC 343
            GCA     +  ++    V  N++                 A+++I+ +   G       
Sbjct: 556 KGCAHESSCVIVMMLEKNVRQNINLSTESLQLLFGREQHERAFEIINLLYKNGYYVK--- 612

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL-YEDI 402
              +   L++  +L EA KL    L +    D   C+  I  LC   +V E F L YE +
Sbjct: 613 IEEVAQFLLKRGKLSEACKLLLFSLENHQNVDIDLCNATILNLCKINKVSEAFSLCYELV 672

Query: 403 E 403
           E
Sbjct: 673 E 673


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 144/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 144 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 203

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 204 GLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 261

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C +G+LD A++
Sbjct: 262 SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFE 321

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++   +      Y++L+  L R     +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 322 HRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFC 381

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G + SV
Sbjct: 382 KKGDVWKGSKLLKEMQRDGHVPSV 405



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 130/269 (48%), Gaps = 5/269 (1%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+Y+ L++G  RLG ++   
Sbjct: 121 YPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 180

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  + +A  + D M   G  PN VT +TLI 
Sbjct: 181 RLKSAMLASG--VQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLID 238

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++         Y++L+  L +   LK+A  L  +M   G+KP
Sbjct: 239 GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKP 298

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  + +I   C  G +   F   + +  I   + +D  +++ L+ GLCR+  SV+A K
Sbjct: 299 DKITYTTLIDGCCKDGDLDTAFEHRKRM--IQENTRLDDVVYTALISGLCREGXSVDAEK 356

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           + R ML   +         I+    K GD
Sbjct: 357 MLREMLSVGLKPDARTYTMIINEFCKKGD 385



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 113/215 (52%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M    L P+++ +  +I   C+ G +  A E+ K M   
Sbjct: 201 LINGLCKESKI-DDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 259

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L+ A  L   M   G   + + Y+ L+DG C+ G ++ A
Sbjct: 260 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTA 319

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E    M +E  +   + V YT++I   C +G   +A  +L  M ++G  P+  T + +I
Sbjct: 320 FEHRKRMIQE--NTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMII 377

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G V S   Y+ L+
Sbjct: 378 NEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 113/240 (47%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+  +  +I  +  +G L DA   +++ + H           +L+ + +L    +  +L+
Sbjct: 54  DLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKL----KYFKLV 109

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 110 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNG 169

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   ++A G       YS L+  L +  ++ +A +LF +ML  G+ P+
Sbjct: 170 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPN 229

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 230 SVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQAHHL 287



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC +   + +A  +LR+M    L+PD   Y  +I  FC+KGD+    +L+K M   
Sbjct: 341 LISGLCREGX-SVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRD 399

Query: 194 DLYPDIITYVSMIKG 208
              P ++TY  ++ G
Sbjct: 400 GHVPSVVTYNVLMNG 414


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 205/400 (51%), Gaps = 14/400 (3%)

Query: 63  IEVLHRCFPSQSQMGIRF-FIWAALQSSYRHSSFMY----NRACEMSRIKQNPSIIIDVV 117
           + ++  CF  + ++   F  +  AL+  +  ++  +    N  C   R+ +  +++  +V
Sbjct: 107 MNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMV 166

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           E  K    VV+V  +  I  LC K R+  EA+ ++ +M ++    + I Y  V+   C+ 
Sbjct: 167 EM-KYRPNVVTVNTL--INGLCLKGRVT-EALVLIDRMVKYGCEANEITYGPVLNRMCKS 222

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G+   A +L + M    +   ++ Y  +I   C  G L+DA  LF  M+  G  A++VAY
Sbjct: 223 GNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAY 282

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           S+++ G+C  G  +   ++L EM   G +  PNVVT++++I +F  +G + EA  + + M
Sbjct: 283 SSIIGGLCNDGRWDDGAKMLREMI--GRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEM 340

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
            A G AP+ +T S+LI GFC E  L EA Q++D +V+ G   +   YS L+    + KR+
Sbjct: 341 VARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRV 400

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
               +LF ++ + G+  D +  + +++  C  G++     L++++   G   SV +  + 
Sbjct: 401 DNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVT--YG 458

Query: 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457
           +LL GLC      +A ++   M K R+ L G  +  I+ H
Sbjct: 459 ILLDGLCDNGELQKALEIFEKMQKSRMIL-GIGIYNIIIH 497



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 159/302 (52%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+  +C+    A  A+ + RKM E  ++   + Y+ VI   C+ G++  A  L   M + 
Sbjct: 215 VLNRMCKSGNTA-LALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMK 273

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  D++ Y S+I G CN GR +D   + + M       N+V +SAL+D   + G +  A
Sbjct: 274 GIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEA 333

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL  EM   G   +P+ +TY+S+I  FC +  + EA  +LD M + GC PN VT S LI
Sbjct: 334 KELYNEMVARG--IAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILI 391

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             +C    +D   +L  ++ + G V+    Y++LV    ++ +L  A++LF +M++ GV 
Sbjct: 392 NSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVP 451

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P  +   +++  LC  G++ +   ++E ++K   +  +   I+++++ G+C  +   +A 
Sbjct: 452 PSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGI--GIYNIIIHGMCNASKVDDAW 509

Query: 434 KL 435
            L
Sbjct: 510 SL 511



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 140/273 (51%), Gaps = 3/273 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   R  ++   +LR+M   ++ P+ + ++ +I +F ++G ++ A EL   M   
Sbjct: 285 IIGGLCNDGRW-DDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVAR 343

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD ITY S+I GFC   RL +A  +  +M   GC  N+V YS L++  C+   ++  
Sbjct: 344 GIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNG 403

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + L  E+  +G     + VTY +++Q FC  G +  A  +   M + G  P+ VT   L+
Sbjct: 404 MRLFCEISSKG--LVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILL 461

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G L +A ++ +K+     +   G Y+ ++  +    ++ +A  LF  +   GVK
Sbjct: 462 DGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVK 521

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           PD L  +VMI  LC  G + E   L+  +++ G
Sbjct: 522 PDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDG 554



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 124/248 (50%), Gaps = 4/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P +I +  +          +   G  K M  +G   N+   + +++  CR   +  A  +
Sbjct: 67  PSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSV 126

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           +G   K G +  PN +T++++I  FC +G + EA+ ++DRM  +   PN VT++TLI G 
Sbjct: 127 VGRALKFGFE--PNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGL 184

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C++G + EA  LID++V  G  ++   Y  ++  + ++     A  LF KM    +K   
Sbjct: 185 CLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASV 244

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  S++I  LC  G + +   L+ ++E  G  + V +  +S ++ GLC      + AK+ 
Sbjct: 245 VQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVA--YSSIIGGLCNDGRWDDGAKML 302

Query: 437 RFMLKKRI 444
           R M+ + I
Sbjct: 303 REMIGRNI 310



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 122/247 (49%), Gaps = 6/247 (2%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  ++    ++ N   KA+  +  M +  ++    L  DT+ YN +++ FC+ G +  
Sbjct: 378 KGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNV 437

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A EL + M    + P ++TY  ++ G C+ G L+ A  +F+ M++      +  Y+ ++ 
Sbjct: 438 AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIH 497

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C    ++ A  L   +  +G    P+V+TY  +I   C KG + EA  +  +M+  GC
Sbjct: 498 GMCNASKVDDAWSLFCSLSVKG--VKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 555

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
           AP+  T + LI+       +  + +LI+++   G  +       +VV ++   RL   +K
Sbjct: 556 APSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTI-KMVVVMLSDGRL---DK 611

Query: 363 LFSKMLA 369
            F  ML+
Sbjct: 612 TFLDMLS 618


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 146/264 (55%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              K++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYMPSV 416



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A +  G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMQASGVQPDVYTYSVLINGLCKESKM-DDANELFDEMLDNGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E   +M KE  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKKMIKE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            ++G  P   T + +I  FC +G++    +L+ ++   G + S
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPS 415


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 163/311 (52%), Gaps = 5/311 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+  + A +AM +   M     RPD   Y  +I   C+ G+  AA  L+K
Sbjct: 169 VTFTTLINWLCKVGKFA-QAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLK 227

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P+++TY ++I       R+ +A  +F  MK  G + ++  Y++L+ G+C   
Sbjct: 228 KMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFS 287

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
             + A  LL EM     +  P++VT+  ++   C +G + EA G+L  M  +G  P+ VT
Sbjct: 288 QWKEASALLNEMRSL--NIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVT 345

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S+L+ G+ +   + EA +L D ++  G       Y+ L+    + KR+ EA++LF++M+
Sbjct: 346 YSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMI 405

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G+ P+ ++ + +I  LC  G + E   L++++   G L ++ +  +S+LL G C++ +
Sbjct: 406 HQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFT--YSILLDGFCKQGY 463

Query: 429 SVEAAKLARFM 439
             +A +L R M
Sbjct: 464 FGKAFRLFRAM 474



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 151/289 (52%), Gaps = 4/289 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +L +M   ++ PD + +N ++   C++G +  A  ++K M  + + PD++TY S++
Sbjct: 291 EASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLM 350

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+     + +A  LF  M   GC  ++ +Y+ L++G C++  ++ A +L  EM  +G  
Sbjct: 351 YGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQG-- 408

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            +PN V+Y ++I   C  G ++EA  +   M   G  PN  T S L+ GFC +G   +A+
Sbjct: 409 LTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAF 468

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L   + +  S  +   Y+ L+  + ++  L++A KLFS++   G++P+    + +I  L
Sbjct: 469 RLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGL 528

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           C  G + E    + ++E+ G     D   ++V++ G         A +L
Sbjct: 529 CKEGLLDEALEAFRNMEEDG--CPPDEISYNVIIRGFLHHKDESRAVQL 575



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 8/234 (3%)

Query: 115 DVVEAYK------EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           +VVEA K       +GC   V    ++ N   K +  +EA  +  +M    L P+ + YN
Sbjct: 358 EVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYN 417

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I   C+ G +  A  L K M      P++ TY  ++ GFC  G    A  LF+ M+  
Sbjct: 418 TLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQST 477

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
               NLV Y+ L+D +C+ G++  A +L  E+  +G    PN   YT++I   C +G++ 
Sbjct: 478 YSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKG--LQPNAQIYTTIINGLCKEGLLD 535

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
           EAL     ME  GC P+ ++ + +I+GF    +   A QLI ++   G ++  G
Sbjct: 536 EALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVG 589



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 2/215 (0%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD   YN +I  +C+   +  A +L   M    L P+ ++Y ++I G C  G L +A  
Sbjct: 375 KPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARN 434

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LFK M  +G   NL  YS LLDG C+ G   +A  L   M+       PN+V Y  +I  
Sbjct: 435 LFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYS--KPNLVMYNILIDA 492

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +++A  +   +   G  PN    +T+I G C EG LDEA +    +   G    
Sbjct: 493 MCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPD 552

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
              Y+ ++   +  K    A +L  +M   G   D
Sbjct: 553 EISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIAD 587


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 144/259 (55%), Gaps = 2/259 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   R+++A GLF  M  +G   N V ++ L+DG C+ G ++ A+++  +M  +G   
Sbjct: 215 GLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQG--F 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+VVTY ++I   C KG +K+A  +LD M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L ++++          Y++L+  L +  R  +AEK+  +ML  G+KPD    ++++ E C
Sbjct: 333 LRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIG 406
             G V +   L  ++++ G
Sbjct: 393 KKGDVKKASELLREMQRNG 411



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 9/284 (3%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+++ L++G  +LG ++   
Sbjct: 132 YPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGF 191

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M EA G+   M   G  PN VT +TLI 
Sbjct: 192 RLKNAMRASG--VQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLID 249

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G LD A  +  +++  G       Y++L+  L +   LK+A  L  +M   G+KP
Sbjct: 250 GHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKP 309

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  + +I   C  G +   F L E + K      +D  +++ L+ GLC++  +V+A K
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFELRERMIKESI--RLDDVVYTALIFGLCQEGRAVDAEK 367

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSGD----EELITNLPKIG 474
           + R ML+  +         I+    K GD     EL+  + + G
Sbjct: 368 MLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNG 411



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 143/298 (47%), Gaps = 10/298 (3%)

Query: 81  FIWAALQSSYRHSSFMYN----RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136
           F    L+  Y  S + +N    R C+   ++   S    V +A  + G   SV     + 
Sbjct: 123 FYKEILECGYPASLYFFNILMHRFCKEGEMRLAQS----VFDAITKWGLRPSVVSFNTLM 178

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           N   K    +E   +   M    ++PD   Y+ +I   C++  M  A+ L   M    L 
Sbjct: 179 NGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLV 238

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+ +T+ ++I G C  GRL+ A  +++ M   G + ++V Y+ L+ G+C+ G +++A  L
Sbjct: 239 PNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYL 298

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EM ++G    P+ +TYT++I   C +G ++ A  + +RM       + V  + LI G 
Sbjct: 299 LDEMSRKG--LKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGL 356

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           C EG   +A +++ +++  G       Y+ ++ E  +   +K+A +L  +M  +G  P
Sbjct: 357 CQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVP 414



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ SR+ +   +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           RL + AM + R+M      PD + YN +I   C+KGD+  A  L+  M    L PD ITY
Sbjct: 256 RL-DLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A  L + M +     + V Y+AL+ G+C+ G    A ++L EM +
Sbjct: 315 TTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLR 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P+  TYT ++  FC KG +K+A  +L  M+  G  P  VT
Sbjct: 375 VG--LKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVPCVVT 418



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 127/270 (47%), Gaps = 8/270 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G + DA   F++ K+H           +L+ + +     +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKX----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               KE  +C    ++  +  ++  FC +G M+ A  + D +   G  P+ V+ +TL+ G
Sbjct: 121 WGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L + + A G       YS L+  L +  R+ EA  LF +ML +G+ P+
Sbjct: 181 YIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G++     +Y  +   GF  S D   ++ L+ GLC+K    +A  L
Sbjct: 241 GVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGF--SPDVVTYNTLIYGLCKKGDLKQARYL 298

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
              M +K +         +++   K GD E
Sbjct: 299 LDEMSRKGLKPDKITYTTLIDGSCKEGDLE 328


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 142/264 (53%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   + +DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 279 SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L    R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 339 HXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G + SV
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSV 422



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 126/270 (46%), Gaps = 7/270 (2%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+Y+ L++G  RLG ++   
Sbjct: 138 YPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 197

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +    +A  + D M   G  PN V  +TLI 
Sbjct: 198 RLKSAMLASG--VQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLID 255

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++         Y++L+  L +   LK+A  L  +M   G+KP
Sbjct: 256 GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKP 315

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEK-IGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           D +  + +I   C  G +   F   E  ++ I     +D   ++ L+ GLC +  SV+A 
Sbjct: 316 DKITYTTLIDGCCKEGDLDXAF---EHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAE 372

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           K+ R ML   +         I+    K GD
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGD 402



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 2/225 (0%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G    V    V+ N   K    ++A  +  +M    L P+ + +  +I   C+ G +  A
Sbjct: 207 GVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLA 266

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y+ L+DG
Sbjct: 267 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDG 326

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+ G ++ A E    M +E  +   + V YT++I   C +G   +A  +L  M ++G  
Sbjct: 327 CCKEGDLDXAFEHXKRMIQE--NXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLK 384

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           P+  T + +I  FC +G++ +  +L+ ++   G V S   Y+ L+
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 107/238 (44%), Gaps = 4/238 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DJ  +  +I  +  +G L DA   +++   H           +L+ + +L   +      
Sbjct: 71  DJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ + G   S  +  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 131 EEILECGYPAS--LYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+LDE ++L   ++A G       YS L+    +  +  +A +LF +ML  G+ P+ +
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXV 248

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 249 XFTTLIDGHCKNGRVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQAHHL 304



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC + R + +A  +LR+M    L+PD   Y  +I  FC+KGD+    +L+K
Sbjct: 353 VXYTALISGLCXEGR-SVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 411

Query: 189 GMGLIDLYPDIITYVSMIKG 208
            M      P ++TY  ++ G
Sbjct: 412 EMQRDGHVPSVVTYNVLMNG 431


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 174/337 (51%), Gaps = 20/337 (5%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F++N+A E           + +++     GC   +     + N LC++  + + A+ 
Sbjct: 193 HGLFLHNKASEA----------VALIDRMVARGCQPDLFTYGTVVNGLCKRGDI-DLALS 241

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L+KM +  +  D +IY  +I   C   ++  A  L   M    + P+++TY S+I+  C
Sbjct: 242 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 301

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N GR  DA  L   M       N+V +SAL+D   + G +  A +L  EM K   D  P+
Sbjct: 302 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PD 359

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY+S+I  FC    + EA  + + M +  C PN VT +TLIKGFC    ++E  +L  
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 419

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V +   Y++L+  L +      A+K+F KM++ GV PD +  S+++  LC  G
Sbjct: 420 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 479

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCR 425
           ++ +   ++E ++K    S ++ DI++  +++ G+C+
Sbjct: 480 KLEKALVVFEYLQK----SKMEPDIYTYNIMIEGMCK 512



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 152/294 (51%), Gaps = 4/294 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A+ +  +M    +RP+ + YN++IR  C  G    A  L+  M    + P+++T+ ++
Sbjct: 272 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 331

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  F   G+L +A  L+  M +     ++  YS+L++G C    ++ A  +   M  +  
Sbjct: 332 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK-- 389

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           DC PNVVTY ++I+ FC    ++E + +   M   G   N VT +TLI+G    G+ D A
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 449

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            ++  K+V+ G       YS L+  L +  +L++A  +F  +  S ++PD    ++MI  
Sbjct: 450 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEG 509

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +C  G+V +G+ L+  +   G   +V   I++ ++ G CRK    EA  L R M
Sbjct: 510 MCKAGKVEDGWDLFCSLSLKGVKPNV--IIYTTMISGFCRKGLKEEADALFREM 561



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 164/327 (50%), Gaps = 7/327 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C +++L   A+ VL KM +    PD +  ++++  +C    +  A  L+  M +++  P
Sbjct: 125 FCRRSQLP-LALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQP 183

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + +T+ ++I G     +  +A  L   M   GC  +L  Y  +++G+C+ G ++ AL LL
Sbjct: 184 NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL 243

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +MEK  G    +VV YT++I   C    + +AL +   M+  G  PN VT ++LI+  C
Sbjct: 244 KKMEK--GKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 301

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G   +A +L+  ++      +   +S+L+   V+  +L EAEKL+ +M+   + PD  
Sbjct: 302 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 361

Query: 378 ACSVMIRELCLGGQVLEGFCLYE-DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
             S +I   C+  ++ E   ++E  I K  F + V    ++ L+ G C+     E  +L 
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV---TYNTLIKGFCKAKRVEEGMELF 418

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           R M ++ +       + +++ L ++GD
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGD 445



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 155/326 (47%), Gaps = 30/326 (9%)

Query: 97  YNRACEMSRI-------KQNPSIII--DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
           Y R  + SR+       K NP+++    +++A+ +EG             L E  +L +E
Sbjct: 303 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEG------------KLVEAEKLYDE 350

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
                  M +  + PD   Y+++I  FC    +  A  + + M   D +P+++TY ++IK
Sbjct: 351 -------MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 403

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC A R+E+   LF+ M + G   N V Y+ L+ G+ + G  + A ++  +M  +G   
Sbjct: 404 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG--V 461

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY+ ++   C  G +++AL + + ++     P+  T + +I+G C  G +++ + 
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L   +   G   +   Y++++    R    +EA+ LF +M   G  P+    + +IR   
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 581

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDS 413
             G       L +++   GF+    +
Sbjct: 582 RDGDKAASAELIKEMRSCGFVGDAST 607



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 4/247 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ +Y  +I  FC   +L  A  +   M + G   ++V  S+LL+G C    +  A+ L+
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 173

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M     +  PN VT+ ++I          EA+ ++DRM A GC P+  T  T++ G C
Sbjct: 174 DQMFVM--EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLC 231

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G++D A  L+ K+  G   +    Y++++  L   K + +A  LF++M   G++P+ +
Sbjct: 232 KRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 291

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +IR LC  G+  +   L  D+ +     +V +   S L+    ++   VEA KL  
Sbjct: 292 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT--FSALIDAFVKEGKLVEAEKLYD 349

Query: 438 FMLKKRI 444
            M+K+ I
Sbjct: 350 EMIKRSI 356


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 189/374 (50%), Gaps = 9/374 (2%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEM---SRIKQNPSIIIDVVEAYKEEGCVVS 128
           +  ++ +RFF WA  Q  YRH   +Y    E+   +++ Q    ++ ++   + E    +
Sbjct: 112 TDERVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEA 171

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
              + V ++   K R    AM VL  M +  + PD  I N  I +      +  A   ++
Sbjct: 172 FGYVMVSYSRAGKLR---NAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLE 228

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M ++++ P++ITY  +IKG+C+  RLEDA  L   M   GC+ + ++Y  ++  +C+  
Sbjct: 229 RMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEK 288

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++    L+ +M K+  +  P+ VTY + + +    G   EAL  L   E      ++V 
Sbjct: 289 RIKEVRLLMEKMLKD-SNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVG 347

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S ++  FC EG +D+A ++++++ + G +     Y+S++  L + +++ +A+K+  +M 
Sbjct: 348 YSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMY 407

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G KP+ ++ + ++  LC  G  LE   +    E+  ++ +  +  +SVL+ G  R+  
Sbjct: 408 KHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAIT--YSVLMHGFRREGK 465

Query: 429 SVEAAKLARFMLKK 442
           S EA  L R M+KK
Sbjct: 466 SSEACDLVREMIKK 479



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 4/299 (1%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            +EA+  LR+  E   R D + Y+ ++  FC +G M  A E++  M      PD++TY S
Sbjct: 326 GDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTS 385

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C   +++ A  + + M +HGC  N V+Y+ALL+G+C+ G+   A E++   E++ 
Sbjct: 386 VINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDW 445

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PN +TY+ ++  F  +G   EA  ++  M   G  P  V I+ LI+  C E  +DE
Sbjct: 446 W--IPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDE 503

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A + +++ +  G   +   +++++    +   L+ A  L   M  S   PD +  + +I 
Sbjct: 504 AKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIID 563

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
            L   G++ E   L   + ++G + +  +  +  ++   CR     +  KL   ML ++
Sbjct: 564 ALGKKGRIEEATKLAMKMLRVGLIPTPVT--YRTVIHQYCRMGRVEDLLKLLEKMLSRQ 620



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 157/353 (44%), Gaps = 78/353 (22%)

Query: 115 DVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++V     +GC+  V     VI  LC++ R  ++A  +LR+M +   +P+T+ Y  ++  
Sbjct: 366 EIVNEMFSKGCIPDVVTYTSVINGLCQE-RKVDQAKKMLRQMYKHGCKPNTVSYTALLNG 424

Query: 174 FCEKGDMIAADELMKGMGLIDLY-PDIITYVSMIKGFCNAGRLEDACGLFKVM------- 225
            C+ G+ + A E+M  M   D + P+ ITY  ++ GF   G+  +AC L + M       
Sbjct: 425 LCKNGNSLEAREMM-NMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFP 483

Query: 226 ---------------------KR-------HGCAANLVAYSALLDGICRLGSMERALELL 257
                                KR       +GCA N+V ++ ++ G C+   +E AL LL
Sbjct: 484 TPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLL 543

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M        P+VVTYT++I     KG ++EA  +  +M  +G  P  VT  T+I  +C
Sbjct: 544 DDMYLSNK--HPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYC 601

Query: 318 ----VE-----------------------------GNLDEAYQLIDKVVAGGS-VSSGGC 343
               VE                             GNL++AY+L+ KV+   S + +  C
Sbjct: 602 RMGRVEDLLKLLEKMLSRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTC 661

Query: 344 YSSLVVELVRTKRLK-EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           +  +++E   +K +   +  +  +M    + PD   C  + ++L L G+  E 
Sbjct: 662 H--MLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEA 712



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 8/218 (3%)

Query: 124 GCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC V+V     VI   C+K  L   A+ +L  M   +  PD + Y  +I    +KG +  
Sbjct: 515 GCAVNVVNFTTVIHGFCQKDDL-EAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEE 573

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSALL 241
           A +L   M  + L P  +TY ++I  +C  GR+ED   L  K++ R  C     AY+ ++
Sbjct: 574 ATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT---AYNQVI 630

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           + +C  G++E+A +LLG++ +       N  T   +I+ +  KG+   +  +  RM    
Sbjct: 631 EKLCSFGNLEQAYKLLGKVLRTASKIDAN--TCHMLIESYLSKGIPLMSYNVACRMFNRN 688

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             P+      + K   +EG  +EA +LI + V  G +S
Sbjct: 689 LIPDLKLCEKVSKKLMLEGKSEEADKLILRFVERGRIS 726


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 174/337 (51%), Gaps = 20/337 (5%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F++N+A E           + +++     GC   +     + N LC++  + + A+ 
Sbjct: 177 HGLFLHNKASEA----------VALIDRMVARGCQPDLFTYGTVVNGLCKRGDI-DLALS 225

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L+KM +  +  D +IY  +I   C   ++  A  L   M    + P+++TY S+I+  C
Sbjct: 226 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 285

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N GR  DA  L   M       N+V +SAL+D   + G +  A +L  EM K   D  P+
Sbjct: 286 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID--PD 343

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY+S+I  FC    + EA  + + M +  C PN VT +TLIKGFC    ++E  +L  
Sbjct: 344 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 403

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V +   Y++L+  L +      A+K+F KM++ GV PD +  S+++  LC  G
Sbjct: 404 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 463

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCR 425
           ++ +   ++E ++K    S ++ DI++  +++ G+C+
Sbjct: 464 KLEKALVVFEYLQK----SKMEPDIYTYNIMIEGMCK 496



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 152/294 (51%), Gaps = 4/294 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A+ +  +M    +RP+ + YN++IR  C  G    A  L+  M    + P+++T+ ++
Sbjct: 256 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 315

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  F   G+L +A  L+  M +     ++  YS+L++G C    ++ A  +   M  +  
Sbjct: 316 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK-- 373

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           DC PNVVTY ++I+ FC    ++E + +   M   G   N VT +TLI+G    G+ D A
Sbjct: 374 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 433

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            ++  K+V+ G       YS L+  L +  +L++A  +F  +  S ++PD    ++MI  
Sbjct: 434 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEG 493

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +C  G+V +G+ L+  +   G   +V   I++ ++ G CRK    EA  L R M
Sbjct: 494 MCKAGKVEDGWDLFCSLSLKGVKPNV--IIYTTMISGFCRKGLKEEADALFREM 545



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 164/327 (50%), Gaps = 7/327 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C +++L   A+ VL KM +    PD +  ++++  +C    +  A  L+  M +++  P
Sbjct: 109 FCRRSQLP-LALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQP 167

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + +T+ ++I G     +  +A  L   M   GC  +L  Y  +++G+C+ G ++ AL LL
Sbjct: 168 NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL 227

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +MEK  G    +VV YT++I   C    + +AL +   M+  G  PN VT ++LI+  C
Sbjct: 228 KKMEK--GKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 285

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G   +A +L+  ++      +   +S+L+   V+  +L EAEKL+ +M+   + PD  
Sbjct: 286 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 345

Query: 378 ACSVMIRELCLGGQVLEGFCLYE-DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
             S +I   C+  ++ E   ++E  I K  F + V    ++ L+ G C+     E  +L 
Sbjct: 346 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV---TYNTLIKGFCKAKRVEEGMELF 402

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           R M ++ +       + +++ L ++GD
Sbjct: 403 REMSQRGLVGNTVTYNTLIQGLFQAGD 429



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 142/309 (45%), Gaps = 34/309 (11%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R + +A  +L  M E  + P+ + ++ +I  F ++G ++ A++L   M    + P
Sbjct: 284 LCNYGRWS-DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 342

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI TY S+I GFC   RL++A  +F++M    C  N+V Y+ L+ G C+   +E  +EL 
Sbjct: 343 DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 402

Query: 258 GEMEKEG------------------GDCS---------------PNVVTYTSVIQIFCGK 284
            EM + G                  GDC                P+++TY+ ++   C  
Sbjct: 403 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 462

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G +++AL + + ++     P+  T + +I+G C  G +++ + L   +   G   +   Y
Sbjct: 463 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 522

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++++    R    +EA+ LF +M   G  P+    + +IR     G       L +++  
Sbjct: 523 TTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 582

Query: 405 IGFLSSVDS 413
            GF+    +
Sbjct: 583 CGFVGDAST 591



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 4/247 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ +Y  +I  FC   +L  A  +   M + G   ++V  S+LL+G C    +  A+ L+
Sbjct: 98  DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 157

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M     +  PN VT+ ++I          EA+ ++DRM A GC P+  T  T++ G C
Sbjct: 158 DQMFVM--EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLC 215

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G++D A  L+ K+  G   +    Y++++  L   K + +A  LF++M   G++P+ +
Sbjct: 216 KRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 275

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +IR LC  G+  +   L  D+ +     +V +   S L+    ++   VEA KL  
Sbjct: 276 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVT--FSALIDAFVKEGKLVEAEKLYD 333

Query: 438 FMLKKRI 444
            M+K+ I
Sbjct: 334 EMIKRSI 340


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 171/332 (51%), Gaps = 5/332 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+ +   + A  ++ +M +  + P+ +I+  ++   C++G +  A +++  M   
Sbjct: 255 IIHGLCKFSEWKHVAT-LMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQR 313

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD++TY +++ G C    +++A  +F  M R GCA N+++YS L++G C++  +++A
Sbjct: 314 GVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKA 373

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + L  EM +   +  PN+VTY ++I   C  G +++A+ +   M A G  P+ VT   L+
Sbjct: 374 MYLFEEMCQR--ELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILL 431

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C   +LD+A  ++  +           Y+ ++  + R   L+ A  LFS + + G+ 
Sbjct: 432 DYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLH 491

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD    ++MI  LCL G + E   L+ ++   G   S D   ++++  G  R N ++ A 
Sbjct: 492 PDVWTYTIMINGLCLQGLLAEATKLFREMNTDG--CSPDDCTYNLITRGFLRNNETLSAI 549

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           +L + ML +        +  IVE L   G ++
Sbjct: 550 QLLQEMLGRGFSADASTITLIVEMLSDDGLDQ 581



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 152/310 (49%), Gaps = 9/310 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V E ++  G    V    +I  LC K   +  A+ +LR M + +  P+ I YN +I    
Sbjct: 171 VGEGFQPNG----VTYGTLIHGLC-KVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLF 225

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +   +  A  +   M    + P++ TY S+I G C     +    L   M       N+V
Sbjct: 226 KDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVV 285

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L+D +C+ G +  A +++  M + G    P+VVTYT+++   C +  M EA  + D
Sbjct: 286 IFTTLVDALCKEGMVTIAHDVVDVMIQRG--VEPDVVTYTALMDGHCLRSEMDEADKVFD 343

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   GCAPN ++ STLI G+C    +D+A  L +++     V +   Y++L+  L    
Sbjct: 344 TMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVG 403

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           RL++A  LF +M+ASG  PD +   +++  LC    + +   + + IE       + S  
Sbjct: 404 RLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQS-- 461

Query: 416 HSVLLLGLCR 425
           +++++ G+CR
Sbjct: 462 YNIVIDGMCR 471



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 123/247 (49%), Gaps = 3/247 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V +    +GC  +V     + N   K +  ++AM++  +M + +L P+ + YN +I   C
Sbjct: 341 VFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLC 400

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G +  A  L   M      PD++TY  ++   C    L+ A  + K ++    A ++ 
Sbjct: 401 HVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQ 460

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           +Y+ ++DG+CR+G +E A +L   +  +G    P+V TYT +I   C +G++ EA  +  
Sbjct: 461 SYNIVIDGMCRVGELEAAGDLFSSLSSKG--LHPDVWTYTIMINGLCLQGLLAEATKLFR 518

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   GC+P+  T + + +GF        A QL+ +++  G  S+     +L+VE++   
Sbjct: 519 EMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRG-FSADASTITLIVEMLSDD 577

Query: 356 RLKEAEK 362
            L ++ K
Sbjct: 578 GLDQSVK 584



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 134/299 (44%), Gaps = 8/299 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+    +M      P  + +  ++              L K M  + +  D+ T   +
Sbjct: 56  DEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIV 115

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC+  R++    +   + + G   +   ++ L+ G+C  G +  AL L  +M  EG 
Sbjct: 116 INSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG- 174

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PN VTY ++I   C  G  + A+ +L  M    C PN +T +T+I     +  ++EA
Sbjct: 175 -FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEA 233

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             +  +++A G   +   Y+S++  L +    K    L ++M+ S + P+ +  + ++  
Sbjct: 234 LNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDA 293

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC  G V     +  D+  +     V+ D+  ++ L+ G C ++   EA K+   M++K
Sbjct: 294 LCKEGMV----TIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRK 348



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 4/252 (1%)

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N   +++A   F  M       ++V ++ +L  I  +      L L  +M+  G     +
Sbjct: 51  NFNTIDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLG--IPSD 108

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           V T   VI  FC    +     +L ++  LG  P+  T +TLI+G CVEG + EA  L D
Sbjct: 109 VYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFD 168

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           K+V  G   +G  Y +L+  L +    + A +L   M+    +P+ +  + +I  L    
Sbjct: 169 KMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDR 228

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
           QV E   ++ ++   G   +V +  ++ ++ GLC+ +     A L   M+  +I      
Sbjct: 229 QVNEALNIFSEMIAKGISPNVST--YNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVI 286

Query: 451 VDKIVEHLKKSG 462
              +V+ L K G
Sbjct: 287 FTTLVDALCKEG 298



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 6/194 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C + R++   ++  ++V +    G +  +   +++ +   K R  ++AM +L+ +   +L
Sbjct: 400 CHVGRLRDAIALFHEMVAS----GQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNL 455

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   YN VI   C  G++ AA +L   +    L+PD+ TY  MI G C  G L +A  
Sbjct: 456 APDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATK 515

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF+ M   GC+ +   Y+ +  G  R      A++LL EM   G   S +  T T ++++
Sbjct: 516 LFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRG--FSADASTITLIVEM 573

Query: 281 FCGKGMMKEALGIL 294
               G+ +    IL
Sbjct: 574 LSDDGLDQSVKQIL 587



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 95/196 (48%), Gaps = 4/196 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   RL  +A+ +  +M      PD + Y  ++   C+   +  A  ++K +   
Sbjct: 395 LIHGLCHVGRL-RDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGS 453

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +L PDI +Y  +I G C  G LE A  LF  +   G   ++  Y+ +++G+C  G +  A
Sbjct: 454 NLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEA 513

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  EM  +G  CSP+  TY  + + F        A+ +L  M   G + +  TI+ ++
Sbjct: 514 TKLFREMNTDG--CSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIV 571

Query: 314 KGFCVEGNLDEAYQLI 329
           +    +G LD++ + I
Sbjct: 572 EMLSDDG-LDQSVKQI 586


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 157/311 (50%), Gaps = 43/311 (13%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARL--ANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           +V+    E GC   ++M   I + +C++  L  ANE   +L +MP + L+P+ + YN V+
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANE---ILNRMPSYGLKPNVVCYNTVL 328

Query: 172 RLFCEKGDMIAADELMKGM----------------------GLID-------------LY 196
           +  C       A+EL+  M                      GL+D               
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCM 388

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+ITY ++I GFC  G +++A  L K M   GC  N V+Y+ +L G+C  G    A EL
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           + +M ++G  C PN VT+ ++I   C KG++++A+ +L +M   GC+P+ ++ ST+I G 
Sbjct: 449 MSQMIQQG--CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 506

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
              G  +EA +L++ +V  G   +   YSS+   L R  R+ +  ++F  +  + ++ D 
Sbjct: 507 GKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDA 566

Query: 377 LACSVMIRELC 387
           +  + +I  LC
Sbjct: 567 VLYNAVISSLC 577



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 172/365 (47%), Gaps = 37/365 (10%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V+EA   +GC +      ++ N +CE+    +EA+ +LRK+  F    D + YN V++
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQG-CVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C        +ELM  M  +D  P+I+T+ ++I   C  G  E    +   M  HGC  
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG---------------------------- 264
           ++  Y+ ++DGIC+ G +E A E+L  M   G                            
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELL 344

Query: 265 -----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
                 DC  + VT+  ++  FC  G++   + +L++M + GC P+ +T +T+I GFC E
Sbjct: 345 SEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE 404

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +DEA  L+  + + G   +   Y+ ++  L    R  +AE+L S+M+  G  P+ +  
Sbjct: 405 GLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTF 464

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + +I  LC  G V +   L + +   G   S D   +S ++ GL +   + EA +L   M
Sbjct: 465 NTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTEEALELLNVM 522

Query: 440 LKKRI 444
           + K I
Sbjct: 523 VNKGI 527



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 153/276 (55%), Gaps = 4/276 (1%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           VL +M E    PD  +Y  +I   C++G +  A+E++  M    L P+++ Y +++KG C
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           +A R ++A  L   M +  C  + V ++ L+D  C+ G ++R +ELL +M   G  C P+
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG--CMPD 390

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           V+TYT+VI  FC +G++ EA+ +L  M + GC PN V+ + ++KG C  G   +A +L+ 
Sbjct: 391 VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMS 450

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +++  G   +   +++L+  L +   +++A +L  +ML +G  PD ++ S +I  L   G
Sbjct: 451 QMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAG 510

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +  E   L   +   G   S ++ I+S +   L R+
Sbjct: 511 KTEEALELLNVMVNKGI--SPNTIIYSSIACALSRE 544



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 163/353 (46%), Gaps = 7/353 (1%)

Query: 113 IIDVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           I D +E   E   +GC     M  VI     ++     ++ VL  M       DT   N 
Sbjct: 127 IADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNL 186

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           V+   CE+G +  A  L++ +       DI++Y +++KG C A R  D   L   M R  
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           CA N+V ++ L+  +CR G  ER  E+L +M + G  C+P++  Y ++I   C +G ++ 
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHG--CTPDIRMYATIIDGICKEGHLEV 304

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  IL+RM + G  PN V  +T++KG C      EA +L+ ++           ++ LV 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
              +   +    +L  +ML+ G  PD +  + +I   C  G + E   L + +   G   
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +  S  ++++L GLC     V+A +L   M+++         + ++  L K G
Sbjct: 425 NTVS--YTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 135/258 (52%), Gaps = 8/258 (3%)

Query: 134 VIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V FN+     C+   L +  + +L +M      PD I Y  VI  FC++G +  A  L+K
Sbjct: 357 VTFNILVDFFCQNG-LVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 415

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P+ ++Y  ++KG C+AGR  DA  L   M + GC  N V ++ L++ +C+ G
Sbjct: 416 SMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E+A+ELL +M   G  CSP++++Y++VI      G  +EAL +L+ M   G +PN + 
Sbjct: 476 LVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTII 533

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S++      EG +++  Q+ D +      S    Y++++  L +      A   F+ M+
Sbjct: 534 YSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMV 593

Query: 369 ASGVKPDGLACSVMIREL 386
           ++G  P+    +++I+ L
Sbjct: 594 SNGCMPNESTYTMLIKGL 611



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 2/259 (0%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +I+++E     GC+  V     + N   K  L +EA+ +L+ M     +P+T+ Y  V++
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G  + A+ELM  M      P+ +T+ ++I   C  G +E A  L K M  +GC+ 
Sbjct: 435 GLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 494

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L++YS ++DG+ + G  E ALELL  M  +G   SPN + Y+S+      +G + + + 
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKG--ISPNTIIYSSIACALSREGRVNKVIQ 552

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D ++      + V  + +I   C     D A      +V+ G + +   Y+ L+  L 
Sbjct: 553 MFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLA 612

Query: 353 RTKRLKEAEKLFSKMLASG 371
                KEA++L S++ + G
Sbjct: 613 SEGLAKEAQELLSELCSRG 631



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 135/298 (45%), Gaps = 7/298 (2%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + YN ++  +C  G + AA  L      + + P+  T+  +++G C  GR+ DA  +   
Sbjct: 80  VAYNAMVAGYCRAGQLAAARRLAA---AVPVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   GCA     Y  +L+  CR G    ++ +L  M  +G  C+ +      V+   C +
Sbjct: 137 MSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG--CTLDTGNCNLVLNAICEQ 194

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + EA+G+L ++   GC  + V+ + ++KG C+     +  +L+D++V      +   +
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++L+  L R    +   ++ ++M   G  PD    + +I  +C  G +     +   +  
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPS 314

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            G   +V    ++ +L GLC      EA +L   M +K   L     + +V+   ++G
Sbjct: 315 YGLKPNVVC--YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG 370



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 55/265 (20%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++I+  C+AGR  +A    + +   G AA +VAY+A++ G CR G +  A  L   +   
Sbjct: 52  ALIRSLCSAGRTAEA---ARALADAGDAAGVVAYNAMVAGYCRAGQLAAARRLAAAVP-- 106

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP------------------- 304
                PN  T+  V++  C +G + +AL +LD M   GCAP                   
Sbjct: 107 ---VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFR 163

Query: 305 NRVTI----------------STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           N V +                + ++   C +G +DEA  L+ K+   G  +    Y++++
Sbjct: 164 NSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVL 223

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI-EKIGF 407
             L   KR  + E+L  +M+     P+ +  + +I  LC  G       L+E + E +  
Sbjct: 224 KGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG-------LFERVHEVLAQ 276

Query: 408 LS----SVDSDIHSVLLLGLCRKNH 428
           +S    + D  +++ ++ G+C++ H
Sbjct: 277 MSEHGCTPDIRMYATIIDGICKEGH 301


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 157/311 (50%), Gaps = 43/311 (13%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARL--ANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           +V+    E GC   ++M   I + +C++  L  ANE   +L +MP + L+P+ + YN V+
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANE---ILNRMPSYGLKPNVVCYNTVL 328

Query: 172 RLFCEKGDMIAADELMKGM----------------------GLID-------------LY 196
           +  C       A+EL+  M                      GL+D               
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCM 388

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+ITY ++I GFC  G +++A  L K M   GC  N V+Y+ +L G+C  G    A EL
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           + +M ++G  C PN VT+ ++I   C KG++++A+ +L +M   GC+P+ ++ ST+I G 
Sbjct: 449 MSQMIQQG--CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 506

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
              G  +EA +L++ +V  G   +   YSS+   L R  R+ +  ++F  +  + ++ D 
Sbjct: 507 GKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDA 566

Query: 377 LACSVMIRELC 387
           +  + +I  LC
Sbjct: 567 VLYNAVISSLC 577



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 172/365 (47%), Gaps = 37/365 (10%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V+EA   +GC +      ++ N +CE+    +EA+ +LRK+  F    D + YN V++
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQG-CVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C        +ELM  M  +D  P+I+T+ ++I   C  G  E    +   M  HGC  
Sbjct: 225 GLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTP 284

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG---------------------------- 264
           ++  Y+ ++DGIC+ G +E A E+L  M   G                            
Sbjct: 285 DIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELL 344

Query: 265 -----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
                 DC  + VT+  ++  FC  G++   + +L++M + GC P+ +T +T+I GFC E
Sbjct: 345 SEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE 404

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +DEA  L+  + + G   +   Y+ ++  L    R  +AE+L S+M+  G  P+ +  
Sbjct: 405 GLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTF 464

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + +I  LC  G V +   L + +   G   S D   +S ++ GL +   + EA +L   M
Sbjct: 465 NTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTEEALELLNVM 522

Query: 440 LKKRI 444
           + K I
Sbjct: 523 VNKGI 527



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 153/276 (55%), Gaps = 4/276 (1%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           VL +M E    PD  +Y  +I   C++G +  A+E++  M    L P+++ Y +++KG C
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           +A R ++A  L   M +  C  + V ++ L+D  C+ G ++R +ELL +M   G  C P+
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG--CMPD 390

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           V+TYT+VI  FC +G++ EA+ +L  M + GC PN V+ + ++KG C  G   +A +L+ 
Sbjct: 391 VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMS 450

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +++  G   +   +++L+  L +   +++A +L  +ML +G  PD ++ S +I  L   G
Sbjct: 451 QMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAG 510

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +  E   L   +   G   S ++ I+S +   L R+
Sbjct: 511 KTEEALELLNVMVNKGI--SPNTIIYSSIACALSRE 544



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 163/353 (46%), Gaps = 7/353 (1%)

Query: 113 IIDVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           I D +E   E   +GC     M  VI     ++     ++ VL  M       DT   N 
Sbjct: 127 IADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNL 186

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           V+   CE+G +  A  L++ +       DI++Y +++KG C A R  D   L   M R  
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           CA N+V ++ L+  +CR G  ER  E+L +M + G  C+P++  Y ++I   C +G ++ 
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHG--CTPDIRMYATIIDGICKEGHLEV 304

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  IL+RM + G  PN V  +T++KG C      EA +L+ ++           ++ LV 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
              +   +    +L  +ML+ G  PD +  + +I   C  G + E   L + +   G   
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +  S  ++++L GLC     V+A +L   M+++         + ++  L K G
Sbjct: 425 NTVS--YTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 135/258 (52%), Gaps = 8/258 (3%)

Query: 134 VIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V FN+     C+   L +  + +L +M      PD I Y  VI  FC++G +  A  L+K
Sbjct: 357 VTFNILVDFFCQNG-LVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 415

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P+ ++Y  ++KG C+AGR  DA  L   M + GC  N V ++ L++ +C+ G
Sbjct: 416 SMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKG 475

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E+A+ELL +M   G  CSP++++Y++VI      G  +EAL +L+ M   G +PN + 
Sbjct: 476 LVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTII 533

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S++      EG +++  Q+ D +      S    Y++++  L +      A   F+ M+
Sbjct: 534 YSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMV 593

Query: 369 ASGVKPDGLACSVMIREL 386
           ++G  P+    +++I+ L
Sbjct: 594 SNGCMPNESTYTMLIKGL 611



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 2/259 (0%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +I+++E     GC+  V     + N   K  L +EA+ +L+ M     +P+T+ Y  V++
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G  + A+ELM  M      P+ +T+ ++I   C  G +E A  L K M  +GC+ 
Sbjct: 435 GLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 494

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L++YS ++DG+ + G  E ALELL  M  +G   SPN + Y+S+      +G + + + 
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKG--ISPNTIIYSSIACALSREGRVNKVIQ 552

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D ++      + V  + +I   C     D A      +V+ G + +   Y+ L+  L 
Sbjct: 553 MFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLA 612

Query: 353 RTKRLKEAEKLFSKMLASG 371
                KEA++L S++ + G
Sbjct: 613 SEGLAKEAQELLSELCSRG 631



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 135/298 (45%), Gaps = 7/298 (2%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + YN ++  +C  G + AA  L      + + P+  T+  +++G C  GR+ DA  +   
Sbjct: 80  VAYNAMVAGYCRAGQLAAARRLAA---AVPVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   GCA     Y  +L+  CR G    ++ +L  M  +G  C+ +      V+   C +
Sbjct: 137 MSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG--CTLDTGNCNLVLNAICEQ 194

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + EA+G+L ++   GC  + V+ + ++KG C+     +  +L+D++V      +   +
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++L+  L R    +   ++ ++M   G  PD    + +I  +C  G +     +   +  
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPS 314

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            G   +V    ++ +L GLC      EA +L   M +K   L     + +V+   ++G
Sbjct: 315 YGLKPNVVC--YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG 370



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 55/265 (20%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++I+  C+AGR  +A    + +   G AA +VAY+A++ G CR G +  A  L   +   
Sbjct: 52  ALIRSLCSAGRTAEA---ARALADAGDAAGVVAYNAMVAGYCRAGQLAAARRLAAAVP-- 106

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP------------------- 304
                PN  T+  V++  C +G + +AL +LD M   GCAP                   
Sbjct: 107 ---VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFR 163

Query: 305 NRVTI----------------STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           N V +                + ++   C +G +DEA  L+ K+   G  +    Y++++
Sbjct: 164 NSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVL 223

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI-EKIGF 407
             L   KR  + E+L  +M+     P+ +  + +I  LC  G       L+E + E +  
Sbjct: 224 KGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG-------LFERVHEVLAQ 276

Query: 408 LS----SVDSDIHSVLLLGLCRKNH 428
           +S    + D  +++ ++ G+C++ H
Sbjct: 277 MSEHGCTPDIRMYATIIDGICKEGH 301


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 143/271 (52%), Gaps = 3/271 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+       A+ +L KM E  ++   +IYN +I   C+ G  I A  L   M   
Sbjct: 47  IINGLCKMGD-TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDK 105

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            ++PD+ITY  MI  FC +GR  DA  L + M       ++V +SAL++ + + G +  A
Sbjct: 106 GIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEA 165

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E+ G+M + G    P  +TY S+I  FC +  + +A  +LD M +  C+P+ VT STLI
Sbjct: 166 EEIYGDMLRRG--IFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLI 223

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C    +D   ++  ++   G V++   Y++L+    +   L  A+ L + M++SGV 
Sbjct: 224 NGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVA 283

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           P+ +    M+  LC   ++ + F + ED++K
Sbjct: 284 PNYITFQSMLASLCSKKELRKAFAILEDLQK 314



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 132/286 (46%), Gaps = 8/286 (2%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E   RPD + +  ++   C +G ++ A  L+  M      P    Y ++I G C  G 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            E A  L   M+     A++V Y+A++D +C+ G    A  L  EM  +G    P+V+TY
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKG--IFPDVITY 114

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + +I  FC  G   +A  +L  M      P+ VT S LI     EG + EA ++   ++ 
Sbjct: 115 SGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLR 174

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G   +   Y+S++    +  RL +A+++   M +    PD +  S +I   C   +V  
Sbjct: 175 RGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDN 234

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           G  ++ ++ + G +++  +  ++ L+ G C+      A  L   M+
Sbjct: 235 GMEIFCEMHRRGIVANTVT--YTTLIHGFCQVGDLDAAQDLLNVMI 278



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 6/214 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S M +  C   R      ++ D++E       V        + N   K    +EA  +  
Sbjct: 115 SGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVT----FSALINALVKEGKVSEAEEIYG 170

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M    + P TI YN++I  FC++  +  A  ++  M      PD++T+ ++I G+C A 
Sbjct: 171 DMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAK 230

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           R+++   +F  M R G  AN V Y+ L+ G C++G ++ A +LL  M   G   +PN +T
Sbjct: 231 RVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSG--VAPNYIT 288

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           + S++   C K  +++A  IL+ ++     P  V
Sbjct: 289 FQSMLASLCSKKELRKAFAILEDLQKSEVCPRIV 322


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 198/437 (45%), Gaps = 58/437 (13%)

Query: 57  LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-------------- 102
           +D    + VL   F +  +M +R F WA  Q  +R S F++    E              
Sbjct: 79  VDPDLFVRVLS-SFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWV 137

Query: 103 MSR-IKQNPSIIIDVVEAYKEEGCV---VSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           M R I  N   I+DV+      GCV   VSVK++ ++  +  K  +  + + V  KM + 
Sbjct: 138 MERVINANMHRIVDVLIG----GCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKS 193

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            L PD    N ++R+  +K  M  A E+ + MG   + P I+TY +++  +C  G+++  
Sbjct: 194 RLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQG 253

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-------------- 264
             L   M+R GCA N V Y+ L++G+ + G  E+A  L+GEM K G              
Sbjct: 254 LDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYG 313

Query: 265 -------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
                                 SP V TY S I   C  G M +A+  L  M A    P+
Sbjct: 314 YFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPD 373

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V+ +TLI G+C  GNL +A+ L D++ +     +   Y++L+  L R   L+ A++L  
Sbjct: 374 VVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKV 433

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +M+  G+ PD +  ++++   C  G +      ++++   G    +DS  ++  ++G  +
Sbjct: 434 EMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGL--ELDSYAYATRIVGELK 491

Query: 426 KNHSVEAAKLARFMLKK 442
              +  A  L   ML K
Sbjct: 492 LGDTSRAFSLQEEMLAK 508



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 166/366 (45%), Gaps = 48/366 (13%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN--EAM 149
           ++SF+Y   C++ R+      + D++ A      VVS   +  I+  C   RL N  +A 
Sbjct: 342 YNSFIYG-LCKLGRMSDAMQQLSDML-ANNLLPDVVSYNTL--IYGYC---RLGNLMKAF 394

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            +  ++    L P  + YN ++   C +G++  A +L   M    + PDI+TY  ++ G 
Sbjct: 395 LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGS 454

Query: 210 CNAGRLEDACGLFKVMKRHGC-----------------------------------AANL 234
           C  G L  A   F  M   G                                      +L
Sbjct: 455 CKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDL 514

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + Y+ ++DG+C+LG++E A ELL +M  +G    P+ VTYTS+I      G +++   I 
Sbjct: 515 IIYNVVVDGLCKLGNLEEASELLQKMVSDG--VIPDYVTYTSIIHAHLENGRLRKGREIF 572

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             M + G  P+ VT + LI G   +G L+ A+    ++   G + +   Y+SL+  L + 
Sbjct: 573 YEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKV 632

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
           +R+ +A   F++M+  G+ P+  + +++I E C  G   E   LY+ +   G     DS 
Sbjct: 633 RRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGV--QPDSC 690

Query: 415 IHSVLL 420
            HS LL
Sbjct: 691 THSALL 696



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 156/340 (45%), Gaps = 9/340 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  +++Q     +D++   +  GC  +     V+ N   K     +A  ++ +M +  L
Sbjct: 245 CKGGKVQQG----LDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGL 300

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +     YN +I  +  KG +  A  L + M L    P + TY S I G C  GR+ DA  
Sbjct: 301 KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQ 360

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
               M  +    ++V+Y+ L+ G CRLG++ +A  L  E+        P +VTY +++  
Sbjct: 361 QLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY--LFPTIVTYNTLLDG 418

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G ++ A  +   M   G AP+ VT + L+ G C  G+L  A +  D+++  G    
Sbjct: 419 LCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELD 478

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++ +V  ++      A  L  +MLA G  PD +  +V++  LC  G + E   L +
Sbjct: 479 SYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQ 538

Query: 401 DIEKIGFLS---SVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
            +   G +    +  S IH+ L  G  RK   +    L++
Sbjct: 539 KMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSK 578



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 100/204 (49%), Gaps = 2/204 (0%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD IIYN V+   C+ G++  A EL++ M    + PD +TY S+I      GRL     +
Sbjct: 512 PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREI 571

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  M   G   ++V Y+ L+ G    G +ERA     EM+++G    PNV+TY S+I   
Sbjct: 572 FYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKG--ILPNVITYNSLINGL 629

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C    M +A      M   G  PN+ + + LI   C  GN  EA  L  +++  G     
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDS 689

Query: 342 GCYSSLVVELVRTKRLKEAEKLFS 365
             +S+L+ +L +  +L+   +L S
Sbjct: 690 CTHSALLKQLGKDCKLQAVRQLES 713



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K RL   A     +M E  + P+ I YN++I   C+   M  A      M    ++P+  
Sbjct: 597 KGRL-ERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKY 655

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI---CRLGSMERALELL 257
           +Y  +I   CN G  ++A  L+K M   G   +   +SALL  +   C+L ++ R LE L
Sbjct: 656 SYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAV-RQLESL 714

Query: 258 GEME 261
            + E
Sbjct: 715 LDSE 718


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 156/302 (51%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+ ++L  EA   L KM    + P+   YN +I  FC+ G M  AD++++     
Sbjct: 292 LICGFCKHSKLV-EAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFK 350

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  TY S+I G CN G +  A  +F      G   +++ Y+ L+ G+ + G + +A
Sbjct: 351 GFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQA 410

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+L+ +M + G  CSP++ TY  V+   C  G + +A GIL+   A GC P+  T +TLI
Sbjct: 411 LQLMKDMMEHG--CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLI 468

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C + N+D+A +++D +++ G       Y++L+  L + ++L      F  ML  G  
Sbjct: 469 DGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCT 528

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  +++I   C   +V E   L+++++  G    + +     L+ GLC      +A 
Sbjct: 529 PNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVT--LCTLICGLCSNGELDKAY 586

Query: 434 KL 435
           +L
Sbjct: 587 EL 588



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 136/279 (48%), Gaps = 4/279 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ V  +M  +D  P    YN ++ +  E G    A ++   M  I +YPD+ T+   +
Sbjct: 94  EAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRM 153

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           K FC  GR   A  L   M   GC  N V+Y A++ G  +      A  L  EM K+G  
Sbjct: 154 KSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG-- 211

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+++T+  +I + C KG ++E+  +  ++   G  PN  T +  I+G C +G +DEA 
Sbjct: 212 ICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAA 271

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L++ +V+ G       Y++L+    +  +L EAE    KM+ SGV+P+    + +I   
Sbjct: 272 RLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGF 331

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           C  G +     +  D    GF+   D   +S L+ GLC 
Sbjct: 332 CKAGMMQNADKILRDAMFKGFIP--DEFTYSSLINGLCN 368



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 149/334 (44%), Gaps = 46/334 (13%)

Query: 82  IWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYK---EEGCVVSVKMMKVIFN- 137
            + A++  ++HS  +YN    + +      +++  ++  K   E GC   +    ++ N 
Sbjct: 379 FYEAMEKGFKHSIILYNT---LVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNG 435

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   L+ +A  +L         PD   +N +I  +C++ +M  A E++  M    + P
Sbjct: 436 LCKMGCLS-DANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITP 494

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ITY +++ G C A +L++    FK M   GC  N++ Y+ L++  C+   +  A+EL 
Sbjct: 495 DVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELF 554

Query: 258 GEMEKEGGDCSPNVVT------------------------------------YTSVIQIF 281
            EM+  G   +P++VT                                    +  +I  F
Sbjct: 555 KEMKTRG--LTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAF 612

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C K  +  A  +  +M    CAP+  T   +I  +C  GN+D A+  + + ++ G V S 
Sbjct: 613 CEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSF 672

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
                ++  L  T RL EA  + + M+ +G+ P+
Sbjct: 673 TTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPE 706



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 146/298 (48%), Gaps = 4/298 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M +  + PD + +N +I + C+KG++  +++L   +    + P++ T+   I
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +G C  G +++A  L + +   G   ++++Y+ L+ G C+   +  A   L +M   G  
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSG-- 316

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PN  TY ++I  FC  GMM+ A  IL      G  P+  T S+LI G C +G+++ A 
Sbjct: 317 VEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAM 376

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            +  + +  G   S   Y++LV  L +   + +A +L   M+  G  PD    ++++  L
Sbjct: 377 AVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGL 436

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           C  G + +   +  D    G +  + +   + L+ G C++ +  +A ++   ML   I
Sbjct: 437 CKMGCLSDANGILNDAIAKGCIPDIFT--FNTLIDGYCKQRNMDKAIEILDTMLSHGI 492



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 38/248 (15%)

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           +V    G    L  Y  +++ +   G  E   ++L EM K   D       Y  +++ + 
Sbjct: 29  QVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRK-NVDSKMLEGVYIGIMRDYG 87

Query: 283 GKGMMKEALGILDRMEALGCA-----------------------------------PNRV 307
            KG ++EA+ + +RM+   C                                    P+  
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVY 147

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T +  +K FC+ G    A +L++ +   G   +   Y +++    +     EA  LF +M
Sbjct: 148 THTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEM 207

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           L  G+ PD L  + +I  LC  G V E   L+  + K G   ++ +   ++ + GLCRK 
Sbjct: 208 LKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFT--FNIFIQGLCRKG 265

Query: 428 HSVEAAKL 435
              EAA+L
Sbjct: 266 AIDEAARL 273


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 178/351 (50%), Gaps = 47/351 (13%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G V       +I  LC KARL +EAM +L  M    + P T+++N VI   C  G + 
Sbjct: 74  ELGAVNHTTYYNLIHPLC-KARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLR 132

Query: 182 AADELMKGMGLIDLYP-DIITYVSMIKGFCNAGRLEDACGLFKVM--KRH---------- 228
            A  + + M   D +P D +TY  ++ G   AGRL DA  + + M   RH          
Sbjct: 133 HALGVYRQMN--DAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVV 190

Query: 229 -----------------------GCAANLVAYSALLDGICRLGSMERALE-LLGEMEKEG 264
                                  G AAN + YSAL+DG+C+   ++ A+  LLGE+ + G
Sbjct: 191 VQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRG 250

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
              +P++VTY++VI   C  G +++A+ I + M    CAP  +T ++LI G+C  G++DE
Sbjct: 251 --FTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGDMDE 305

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A +L+ K+V          Y++L+    +  RL +A +LF +M+A+ + PD +  + ++ 
Sbjct: 306 AIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVD 365

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            LC  G++ +   L E+I + G   ++ +  ++ ++ G C+ N   +A +L
Sbjct: 366 GLCGEGRMEDALELLEEITRRGCPPTIYT--YNCVVDGYCKSNQVRKAEEL 414



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 168/310 (54%), Gaps = 7/310 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG-MGL 192
           V+ +LC   R+ ++A  ++ +M    +  + I Y+ ++   C+   +  A  L+ G +  
Sbjct: 190 VVQSLCLGDRV-DDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTR 248

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               PDI+TY ++I G C AGRL DA  +F+ M    CA   + Y++L+ G CR G M+ 
Sbjct: 249 RGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGDMDE 305

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+ LLG+M  +  +C+P+V+TYT+++  FC  G + +A  +  +M A   +P+ VT ++L
Sbjct: 306 AIRLLGKMVDD--NCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSL 363

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           + G C EG +++A +L++++   G   +   Y+ +V    ++ ++++AE+L +   + G 
Sbjct: 364 VDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGF 423

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            P+ +  ++++   C  G+  +     + +   G        +++++L  LCR   + +A
Sbjct: 424 VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDA 483

Query: 433 AKLARFMLKK 442
            +    M+++
Sbjct: 484 VQFYEEMIQR 493



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 141/281 (50%), Gaps = 6/281 (2%)

Query: 115 DVVEAYKEEGCV-VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           D V+ ++E  C   ++    +I   C    + +EA+ +L KM + +  PD I Y  ++  
Sbjct: 273 DAVDIFEEMSCAPTAITYNSLIGGYCRAGDM-DEAIRLLGKMVDDNCAPDVITYTTLMSA 331

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+ G +  A EL + M    L PD++T+ S++ G C  GR+EDA  L + + R GC   
Sbjct: 332 FCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPT 391

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+ ++DG C+   + +A EL+ +    G    PN VTY  ++   C  G   +AL  
Sbjct: 392 IYTYNCVVDGYCKSNQVRKAEELVADFRSRG--FVPNTVTYNILVAGCCRAGRTDQALQY 449

Query: 294 LDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
           LD++ + G  C  +    + ++   C +G  D+A Q  ++++  G V +   ++++V  L
Sbjct: 450 LDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFAL 509

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            +  + ++A +L  +M+  G  P    C  ++   C  G +
Sbjct: 510 CKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMI 550



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 147/303 (48%), Gaps = 10/303 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+  L   A+L +    +L ++ +  L PD +  N ++   C+  D   A  L   M  +
Sbjct: 16  VLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAEL 75

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               +  TY ++I   C A  L++A GL   MK  G     + ++ ++ G+CR G +  A
Sbjct: 76  GAV-NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHA 134

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L +  +M        P+ +TYT ++      G +++A+ +L  M +    P+  T++ ++
Sbjct: 135 LGVYRQMNDAH---PPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVV 191

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK-LFSKMLASGV 372
           +  C+   +D+A +L+++++  G  ++   YS+LV  L + +RL EA   L  ++   G 
Sbjct: 192 QSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGF 251

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD +  S +I  LC  G++ +   ++E++       +  +  ++ L+ G CR     EA
Sbjct: 252 TPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS-----CAPTAITYNSLIGGYCRAGDMDEA 306

Query: 433 AKL 435
            +L
Sbjct: 307 IRL 309


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 143/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L   L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 333 HRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G + SV
Sbjct: 393 KKGDVWKGSKLLKEMQRDGHVPSV 416



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 92/180 (51%), Gaps = 3/180 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM + ++M    L PD I YN +I   C+KGD+  A  L+ 
Sbjct: 242 VTFTTLIDGHCKNGRV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID 300

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  L PD ITY ++I G C  G L+ A    K M +     + VAY+AL  G+C+ G
Sbjct: 301 EMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEG 360

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G    P+  TYT +I  FC KG + +   +L  M+  G  P+ VT
Sbjct: 361 RSVDAEKMLREMLSVG--LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 418



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 145/336 (43%), Gaps = 35/336 (10%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           R D  +++ +I  + E G +  A E  +       +    T   +++        +   G
Sbjct: 63  RSDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            ++ +   G  A+L  ++ L+   C+ G +  A  +   + K G    P+VV+Y +++  
Sbjct: 123 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG--LRPSVVSYNTLMNG 180

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +   G + E   +   M A G  P+  T S LI G C E  +D+A +L D+++  G V +
Sbjct: 181 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPN 240

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  +++L+    +  R+  A +++ +ML+  + PD +  + +I  LC  G + +   L +
Sbjct: 241 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID 300

Query: 401 DI-------EKIGFLSSVD-----SDI---------------------HSVLLLGLCRKN 427
           ++       +KI + + +D      D+                     ++ L  GLC++ 
Sbjct: 301 EMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEG 360

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            SV+A K+ R ML   +         I+    K GD
Sbjct: 361 RSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGD 396


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 143/271 (52%), Gaps = 3/271 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K      A+ +L KM E  ++   +IYN +I   C+ G  I A  L   M   
Sbjct: 47  IINGLC-KMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDK 105

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            ++PD+ITY  MI  FC +GR  DA  L + M       ++V +SAL++ + + G +  A
Sbjct: 106 GIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEA 165

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E+ G+M + G    P  +TY S+I  FC +  + +A  +LD M +  C+P+ VT STLI
Sbjct: 166 EEIYGDMLRRG--IFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLI 223

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C    +D   ++  ++   G V++   Y++L+    +   L  A+ L + M++SGV 
Sbjct: 224 NGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVA 283

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           P+ +    M+  LC   ++ + F + ED++K
Sbjct: 284 PNYITFQSMLASLCSKKELRKAFAILEDLQK 314



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 132/286 (46%), Gaps = 8/286 (2%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E   RPD + +  ++   C +G ++ A  L+  M      P    Y ++I G C  G 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            E A  L   M+     A++V Y+A++D +C+ G    A  L  EM  +G    P+V+TY
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKG--IFPDVITY 114

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + +I  FC  G   +A  +L  M      P+ VT S LI     EG + EA ++   ++ 
Sbjct: 115 SGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLR 174

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G   +   Y+S++    +  RL +A+++   M +    PD +  S +I   C   +V  
Sbjct: 175 RGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDN 234

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           G  ++ ++ + G +++  +  ++ L+ G C+      A  L   M+
Sbjct: 235 GMEIFCEMHRRGIVANTVT--YTTLIHGFCQVGDLDAAQDLLNVMI 278



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 1/139 (0%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
            ++    +I   C++ RL N+A  +L  M      PD + ++ +I  +C+   +    E+
Sbjct: 180 TTITYNSMIDGFCKQDRL-NDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEI 238

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
              M    +  + +TY ++I GFC  G L+ A  L  VM   G A N + + ++L  +C 
Sbjct: 239 FCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCS 298

Query: 247 LGSMERALELLGEMEKEGG 265
              + +A  +L +++K  G
Sbjct: 299 KKELRKAFAILEDLQKSEG 317


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 153/297 (51%), Gaps = 2/297 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EAM +L +M E +L+PD   YN++IR  C +G +  A +++  +      PD+ITY  +
Sbjct: 213 DEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNIL 272

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           ++G  N G+ E    L   M   GC AN+V YS L+  +CR G +E  + LL +M+K+G 
Sbjct: 273 LRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKG- 331

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+   Y  +I   C +G +  A+ +LD M + GC P+ V  +T++   C +   DEA
Sbjct: 332 -LKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEA 390

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             + +K+   G   +   Y+S+   L  T     A  +  +ML  GV PDG+  + +I  
Sbjct: 391 LSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISC 450

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC  G V E   L  D+E            ++++LLGLC+ +   +A ++   M+ K
Sbjct: 451 LCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDK 507



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 159/329 (48%), Gaps = 46/329 (13%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIR-LFCEKGDMIAADELMKGMGLIDLY--P 197
           KA   NE+++ LR +     +PD ++   +I  LF  K      D+ ++ M +++ +  P
Sbjct: 69  KAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSK----TIDKAIQVMHILENHGHP 124

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+I Y ++I GFC A R++ A  +   MK  G + ++V Y+ L+  +C  G ++ ALE  
Sbjct: 125 DLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFK 184

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            ++ KE  +C P VVTYT +I+    +G + EA+ +LD M  +   P+  T +++I+G C
Sbjct: 185 NQLLKE--NCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMC 242

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            EG +D A+Q+I                                   S + + G  PD +
Sbjct: 243 REGYVDRAFQII-----------------------------------SSISSKGYAPDVI 267

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             ++++R L   G+   G+ L  D+   G  ++V +  +SVL+  +CR     E   L +
Sbjct: 268 TYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVT--YSVLISSVCRDGKVEEGVGLLK 325

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
            M KK +   G   D ++  L K G  +L
Sbjct: 326 DMKKKGLKPDGYCYDPLIAALCKEGRVDL 354



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 147/295 (49%), Gaps = 7/295 (2%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157
           +R+C+     ++   +  +V    +   V+  K++  +F     ++  ++A+ V+  + E
Sbjct: 65  SRSCKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFT----SKTIDKAIQVMHIL-E 119

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
               PD I YN +I  FC    + +A +++  M      PDI+TY  +I   C+ G L+ 
Sbjct: 120 NHGHPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDS 179

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A      + +  C   +V Y+ L++     G ++ A++LL EM +   +  P++ TY S+
Sbjct: 180 ALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEI--NLQPDMFTYNSI 237

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I+  C +G +  A  I+  + + G AP+ +T + L++G   +G  +  Y+L+  +VA G 
Sbjct: 238 IRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGC 297

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            ++   YS L+  + R  +++E   L   M   G+KPDG     +I  LC  G+V
Sbjct: 298 EANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRV 352



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 126/267 (47%), Gaps = 17/267 (6%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVV--EAYKEEGCVVSVKMMK----------- 133
           ++ Y   S M  R CE + +    S++I  V  +   EEG  +   M K           
Sbjct: 283 EAGYELMSDMVARGCEANVVTY--SVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYD 340

Query: 134 -VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
            +I  LC++ R+ + A+ VL  M      PD + YN ++   C++     A  + + +G 
Sbjct: 341 PLIAALCKEGRV-DLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGE 399

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   P+  +Y SM     + G    A G+   M   G   + + Y++L+  +CR G ++ 
Sbjct: 400 VGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDE 459

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+ELL +ME E  +C P+VV+Y  V+   C    + +A+ +L  M   GC PN  T + L
Sbjct: 460 AIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFL 519

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVS 339
           I+G    G L++A  L   +V   ++S
Sbjct: 520 IEGIGFGGCLNDARDLATTLVNMDAIS 546



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 124 GCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC  +V    V I ++C   ++  E + +L+ M +  L+PD   Y+ +I   C++G +  
Sbjct: 296 GCEANVVTYSVLISSVCRDGKV-EEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDL 354

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E++  M      PDI+ Y +++   C   R ++A  +F+ +   GC+ N  +Y+++  
Sbjct: 355 AIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFS 414

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD--RMEAL 300
            +   G   RAL ++ EM  +G D  P+ +TY S+I   C  GM+ EA+ +L    ME+ 
Sbjct: 415 ALWSTGHKVRALGMILEMLDKGVD--PDGITYNSLISCLCRDGMVDEAIELLVDMEMESS 472

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            C P+ V+ + ++ G C    + +A +++  +V  G   +   Y+ L+
Sbjct: 473 ECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLI 520



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 105/214 (49%), Gaps = 5/214 (2%)

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C AG   ++    + +   G   ++V  + L+ G+    ++++A++++  +E  G    P
Sbjct: 68  CKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHG---HP 124

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +++ Y ++I  FC    +  A  +LDRM+  G +P+ VT + LI   C  G LD A +  
Sbjct: 125 DLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFK 184

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           ++++      +   Y+ L+   +    + EA KL  +ML   ++PD    + +IR +C  
Sbjct: 185 NQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCRE 244

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           G V   F +   I   G+   V +  +++LL GL
Sbjct: 245 GYVDRAFQIISSISSKGYAPDVIT--YNILLRGL 276


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 125/470 (26%), Positives = 211/470 (44%), Gaps = 58/470 (12%)

Query: 57  LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-------------- 102
           +D    + VL   F +  +M +R F WA  Q  +R S F++    E              
Sbjct: 385 VDPDLFVRVL-SSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWV 443

Query: 103 MSR-IKQNPSIIIDVVEAYKEEGCV---VSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           M R I  N   I+DV+      GCV   VSVK++ ++  +  K  +  + + V  KM + 
Sbjct: 444 MERVINANMHRIVDVLIG----GCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKS 499

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            L PD    N ++R+  +K  M  A E+ + MG   + P I+TY +++  +C  G+++  
Sbjct: 500 RLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQG 559

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-------------- 264
             L   M+R GCA N V Y+ L++G+ + G  E+A  L+GEM K G              
Sbjct: 560 LDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYG 619

Query: 265 -------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
                                 SP V TY S I   C  G M +A+  L  M A    P+
Sbjct: 620 YFNKGLLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPD 679

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V+ +TLI G+C  GNL +A+ L D++ +     +   Y++L+  L R   L+ A++L  
Sbjct: 680 VVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKV 739

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +M+  G+ PD +  ++++   C  G +      ++++   G    +DS  ++  ++G  +
Sbjct: 740 EMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGL--ELDSYAYATRIVGELK 797

Query: 426 KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIGG 475
              +  A  L   ML K         + +V+ L K G+ E  + L +  G
Sbjct: 798 LGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKDG 847


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 142/264 (53%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 144 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 203

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   + +DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 204 GXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 261

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 262 SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFE 321

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L    R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 322 HXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFC 381

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G + SV
Sbjct: 382 KKGDVWKGSKLLKEMQRDGHVPSV 405



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 126/270 (46%), Gaps = 7/270 (2%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+Y+ L++G  RLG ++   
Sbjct: 121 YPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 180

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +    +A  + D M   G  PN V  +TLI 
Sbjct: 181 RLKSAMLASG--VQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLID 238

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++         Y++L+  L +   LK+A  L  +M   G+KP
Sbjct: 239 GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKP 298

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEK-IGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           D +  + +I   C  G +   F   E  ++ I     +D   ++ L+ GLC +  SV+A 
Sbjct: 299 DKITYTTLIDGCCKEGDLDSAF---EHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAE 355

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           K+ R ML   +         I+    K GD
Sbjct: 356 KMLREMLSVGLKPDARTYTMIINEFCKKGD 385



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 2/225 (0%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G    V    V+ N   K    ++A  +  +M    L P+ + +  +I   C+ G +  A
Sbjct: 190 GVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLA 249

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y+ L+DG
Sbjct: 250 MEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDG 309

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+ G ++ A E    M +E  +   + V YT++I   C +G   +A  +L  M ++G  
Sbjct: 310 CCKEGDLDSAFEHXKRMIQE--NXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLK 367

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           P+  T + +I  FC +G++ +  +L+ ++   G V S   Y+ L+
Sbjct: 368 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 112/247 (45%), Gaps = 8/247 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DJ  +  +I  +  +G L DA   +++   H           +L+ + +L    +  +L+
Sbjct: 54  DJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKL----KYFKLV 109

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 110 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNG 169

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   ++A G       YS L+    +  +  +A +LF +ML  G+ P+
Sbjct: 170 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPN 229

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 230 XVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQAHHL 287

Query: 436 ARFMLKK 442
              M  K
Sbjct: 288 IDEMSXK 294



 Score = 45.4 bits (106), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC + R + +A  +LR+M    L+PD   Y  +I  FC+KGD+    +L+K
Sbjct: 336 VXYTALISGLCXEGR-SVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 394

Query: 189 GMGLIDLYPDIITYVSMIKG 208
            M      P ++TY  ++ G
Sbjct: 395 EMQRDGHVPSVVTYNVLMNG 414


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 197/427 (46%), Gaps = 66/427 (15%)

Query: 74   SQMGIRFFIWAALQSSYRHSSFMY-------------NRA-----------CEMSRIKQN 109
            S + + FF WA     +R+   +Y              RA            E+ ++K+ 
Sbjct: 721  SMVALSFFYWAVGFPKFRYFMRLYIVCTMSLVGKCNLERAHEVVECMVGVFAEIGKLKEA 780

Query: 110  PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
              +I+D+    + +G V++ ++M  I  +  + RL   A  V  +M    + PD+  Y  
Sbjct: 781  VDMILDM----RNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKY 836

Query: 170  VIRLFCEKGDMIAAD----ELMKGMGLID------------------------------- 194
            +I  +C  G+++ AD    E+M+   ++D                               
Sbjct: 837  IIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMG 896

Query: 195  LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
            L P++I Y SMI G C  G ++ A  L + M ++G   N+  +++L+ G+C+ G  ERA 
Sbjct: 897  LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAF 956

Query: 255  ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
             L  ++ +   +  PNV TYT++I  +C +  +  A  + +RM+  G  PN  T +TLI 
Sbjct: 957  RLFLKLIR-SDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 1015

Query: 315  GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
            G C  GN  +AY+L++ +   G   +   Y+S+V  L +  R +EA KL +    + ++ 
Sbjct: 1016 GHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEA 1075

Query: 375  DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
            DG+  +++I E C    + +       + K+GF    D  +++ L+   CR+N   ++ K
Sbjct: 1076 DGVTYTILISEQCKRADMNQALVFLNKMFKVGF--QPDIHLYTTLIAAFCRQNMMKDSEK 1133

Query: 435  LARFMLK 441
            L   ++K
Sbjct: 1134 LFDEVIK 1140



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 147/311 (47%), Gaps = 8/311 (2%)

Query: 134  VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            +I   C++ +L+   M +  +M E  L P+T  Y  +I   C+ G+   A ELM+ M   
Sbjct: 978  MISGYCKEEKLSRAEM-LFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNE 1036

Query: 194  DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              +P+  TY S++ G C  GR E+A  L     ++   A+ V Y+ L+   C+   M +A
Sbjct: 1037 GFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQA 1096

Query: 254  LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            L  L +M K G    P++  YT++I  FC + MMK++  + D +  LG AP + T +++I
Sbjct: 1097 LVFLNKMFKVG--FQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMI 1154

Query: 314  KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             G+C E  +  A +   K+   G       Y +L+  L +  RL EA +L+  M+  G+ 
Sbjct: 1155 CGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLS 1214

Query: 374  PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            P  +    +  E C          + E + K  ++ +V +     L+  LC +     AA
Sbjct: 1215 PCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTVHT-----LIRKLCCEKKVALAA 1269

Query: 434  KLARFMLKKRI 444
                 +L K +
Sbjct: 1270 LFFHKLLDKEV 1280



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 169/396 (42%), Gaps = 74/396 (18%)

Query: 122  EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
            E G VV    + +I    CEK+ L N A+W   K+ +  L P+ I Y+++I   C++G +
Sbjct: 859  ERGFVVDNATLTLIITAFCEKS-LVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSV 917

Query: 181  IAADELMKGM-----------------GLI------------------DLY-PDIITYVS 204
              A EL++ M                 GL                   D Y P++ TY +
Sbjct: 918  KQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTA 977

Query: 205  MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
            MI G+C   +L  A  LF+ MK  G   N   Y+ L+DG C+ G+  +A EL+  M  EG
Sbjct: 978  MISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEG 1037

Query: 265  ---GDCSPNV------------------------------VTYTSVIQIFCGKGMMKEAL 291
                 C+ N                               VTYT +I   C +  M +AL
Sbjct: 1038 FFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQAL 1097

Query: 292  GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
              L++M  +G  P+    +TLI  FC +  + ++ +L D+V+  G   +   Y+S++   
Sbjct: 1098 VFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGY 1157

Query: 352  VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
             R K++  A K F KM   G  PD ++   +I  LC   ++ E   LY+ +   G     
Sbjct: 1158 CREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGL---S 1214

Query: 412  DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
              ++  V L     K     +A +    L K++W++
Sbjct: 1215 PCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIR 1250


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 146/278 (52%), Gaps = 4/278 (1%)

Query: 116 VVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++E   E G V  V     +I  LC+  R+  EA  +L  M +  +RP+ + YN +I  +
Sbjct: 195 MIEEMSERGIVPDVVTYNSLIDGLCKSYRM-EEARQLLETMVKRKVRPNLVTYNTLIYGY 253

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ G    A +L++ M     +PD++T+ S+I GFC   +++ AC +  +MK+  CA NL
Sbjct: 254 CKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNL 313

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V Y+ L+ G+C  G    A ELL EM+  G    P+++TY S+I IFC    +++A  I 
Sbjct: 314 VTYNVLISGLCDAGRANEACELLSEMDGRG--ILPDIITYNSLIGIFCRNFQIEQAFQIQ 371

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           + M   G  P+ ++  TL          DEA+ L+D +   G++ +   ++SL+  L  +
Sbjct: 372 NLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCS 431

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +RL EA  L + M   G  P      V++  LC  G+V
Sbjct: 432 RRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRV 469



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 175/339 (51%), Gaps = 5/339 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           SV    ++  LC KA   +EA  ++ +M E  + PD + YN++I   C+   M  A +L+
Sbjct: 173 SVLFNILVHGLC-KANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLL 231

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M    + P+++TY ++I G+C  G    A  L + M + G   ++V +++L+ G C+ 
Sbjct: 232 ETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQK 291

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             +++A E+L  M+K  G C+PN+VTY  +I   C  G   EA  +L  M+  G  P+ +
Sbjct: 292 SKIDKACEVLHLMKK--GLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDII 349

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T ++LI  FC    +++A+Q+ + +V  G +  G  Y +L V L++++R  EA  L   M
Sbjct: 350 TYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNM 409

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
             +G  P+    + ++  LC   ++ E   L   + ++G   +  +  + VL+ GLC+  
Sbjct: 410 FDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAAST--YEVLVTGLCKAG 467

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
              +A ++   M+ + I         IV  L + G ++L
Sbjct: 468 RVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDL 506



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 156/309 (50%), Gaps = 7/309 (2%)

Query: 141 KARLANEAMWVLR-KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
           KAR  ++A  + R ++       + I YN +I  FC+ GDM  A +L+  M      PD+
Sbjct: 81  KARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDV 140

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           +T+ S+++  CN G L  A   F+  +   CA + V ++ L+ G+C+   +  A +++ E
Sbjct: 141 VTHSSIVQALCNTGNLSRAMQYFR--ESVECAPDSVLFNILVHGLCKANQLSEARQMIEE 198

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M + G    P+VVTY S+I   C    M+EA  +L+ M      PN VT +TLI G+C  
Sbjct: 199 MSERG--IVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKT 256

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G    A+QLI++++  G+      ++SL+    +  ++ +A ++   M      P+ +  
Sbjct: 257 GCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTY 316

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +V+I  LC  G+  E   L  +++  G L  + +  ++ L+   CR     +A ++   M
Sbjct: 317 NVLISGLCDAGRANEACELLSEMDGRGILPDIIT--YNSLIGIFCRNFQIEQAFQIQNLM 374

Query: 440 LKKRIWLQG 448
           +++ +   G
Sbjct: 375 VERGVIPDG 383



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 9/239 (3%)

Query: 205 MIKGFCNAGRLEDACGLFK--VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
           +++    A R   A  +F+  ++ +H C  N + Y+ L+ G C+ G MERA +LL EM++
Sbjct: 75  LLRTLVKARRHHQAYQIFRDELLGQH-CDTNHITYNTLIGGFCKAGDMERAFQLLAEMKE 133

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G   SP+VVT++S++Q  C  G +  A+      E++ CAP+ V  + L+ G C    L
Sbjct: 134 RGH--SPDVVTHSSIVQALCNTGNLSRAMQYF--RESVECAPDSVLFNILVHGLCKANQL 189

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            EA Q+I+++   G V     Y+SL+  L ++ R++EA +L   M+   V+P+ +  + +
Sbjct: 190 SEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTL 249

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           I   C  G       L E + + G  +  D    + L+ G C+K+   +A ++   M K
Sbjct: 250 IYGYCKTGCTGLAHQLIERMIQSG--THPDVVTFNSLISGFCQKSKIDKACEVLHLMKK 306



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 39/262 (14%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  ++ +M +    PD + +N++I  FC+K  +  A E++  M      P+++TY  +I 
Sbjct: 262 AHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLIS 321

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--- 264
           G C+AGR  +AC L   M   G   +++ Y++L+   CR   +E+A ++   M + G   
Sbjct: 322 GLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIP 381

Query: 265 ---GDCS---------------------------PNVVTYTSVIQIFCGKGMMKEALGIL 294
                C+                           PN+ T+ S+++  C    + EA  +L
Sbjct: 382 DGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLL 441

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS---VSSGGCYSSLVVEL 351
             M  +GC P   T   L+ G C  G +D+A +++  +V+ G    VSS G   ++V  L
Sbjct: 442 AVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSG---TIVHTL 498

Query: 352 VRTKRLKEAEKLFSKMLASGVK 373
            R  +   A   F +++A+  K
Sbjct: 499 AREGKQDLALHYFDQVVAAESK 520



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 4/223 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R ANEA  +L +M    + PD I YN++I +FC    +  A ++   M   
Sbjct: 319 LISGLCDAGR-ANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVER 377

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD I+Y ++      + R ++A  L   M   G   NL  +++L++G+C    ++ A
Sbjct: 378 GVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEA 437

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL  M + G  C P   TY  ++   C  G + +A  +L  M + G  P   +  T++
Sbjct: 438 RHLLAVMRRVG--CDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIV 495

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
                EG  D A    D+VVA  S +    Y  L +E V+  R
Sbjct: 496 HTLAREGKQDLALHYFDQVVAAESKACDPSYQKL-LEFVKVLR 537


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 163/307 (53%), Gaps = 5/307 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C+   + N A  V  ++P+  LRP  + +N +I   C+ GD+     L   M   
Sbjct: 254 LMHGFCKAGDVGN-ARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESE 312

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ T+ ++I G C  GRL++   LF  M   G   N V ++ L+DG C+ G ++ A
Sbjct: 313 GVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLA 372

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+    M  +G    P++VTY ++I   C  G +KEA  +++ M A G  P+++T +TLI
Sbjct: 373 LKNFQMMLAQG--VRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLI 430

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C +G+++ A ++  ++V  G       +++L+  L R  R+ +A ++ + ML++G K
Sbjct: 431 DGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFK 490

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD    +++I   C  G V  GF L ++++  G +  V +  ++ L+ GLC++     A 
Sbjct: 491 PDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVT--YNALMNGLCKQGQMKNAK 548

Query: 434 KLARFML 440
            L   ML
Sbjct: 549 MLLDAML 555



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 131/267 (49%), Gaps = 4/267 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P I  +  ++ GFC AG + +A  +F  + + G    +V+++ L+ G C+ G +E    L
Sbjct: 246 PKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRL 305

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
            G ME EG    P+V T++++I   C +G + E   + D M   G  PN VT +TLI G 
Sbjct: 306 KGVMESEG--VCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQ 363

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G +D A +    ++A G       Y++L+  L +   LKEA +L ++M ASG+KPD 
Sbjct: 364 CKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDK 423

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I   C  G +     +   + + G    +D    + L+ GLCR+    +A ++ 
Sbjct: 424 ITFTTLIDGCCKDGDMESALEIKRRMVEEGI--ELDDVAFTALISGLCREGRVHDAGRML 481

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             ML        P    +++   K GD
Sbjct: 482 TDMLSAGFKPDDPTYTMVIDCFCKKGD 508



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 136/271 (50%), Gaps = 6/271 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD   ++ +I   C++G +     L   M    L P+ +T+ ++I G C  G+++ A   
Sbjct: 316 PDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKN 375

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F++M   G   +LV Y+AL++G+C++G ++ A  L+ EM   G    P+ +T+T++I   
Sbjct: 376 FQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASG--LKPDKITFTTLIDGC 433

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G M+ AL I  RM   G   + V  + LI G C EG + +A +++  +++ G     
Sbjct: 434 CKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDD 493

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y+ ++    +   +K   KL  +M + G  P  +  + ++  LC  GQ+     L + 
Sbjct: 494 PTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDA 553

Query: 402 IEKIGFLSSVDSDI-HSVLLLGLCRKNHSVE 431
           +  +G      +DI +++LL G  +   SV+
Sbjct: 554 MLNVGV---APNDITYNILLDGHSKHGSSVD 581



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 16/273 (5%)

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS--MERALELL 257
           + + ++I  + ++G   DA   F+++ ++     +     LL  + RL    +ER+  L 
Sbjct: 177 LVFDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALY 236

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+   G    P +  +  ++  FC  G +  A  + D +   G  P  V+ +TLI G C
Sbjct: 237 LEVLDSG--YPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCC 294

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+++E ++L   + + G       +S+L+  L +  RL E   LF +M   G+ P+G+
Sbjct: 295 KSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGV 354

Query: 378 ACSVMIRELCLGGQV---LEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEA 432
             + +I   C GG+V   L+ F       ++     V  D+  ++ L+ GLC+     EA
Sbjct: 355 TFTTLIDGQCKGGKVDLALKNF-------QMMLAQGVRPDLVTYNALINGLCKVGDLKEA 407

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            +L   M    +         +++   K GD E
Sbjct: 408 RRLVNEMTASGLKPDKITFTTLIDGCCKDGDME 440


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 156/302 (51%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+ ++L  EA   L KM    + P+   YN +I  FC+ G M  AD++++     
Sbjct: 292 LICGFCKHSKLV-EAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFK 350

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  TY S+I G CN G +  A  +F      G   +++ Y+ L+ G+ + G + +A
Sbjct: 351 GFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQA 410

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+L+ +M + G  CSP++ TY  V+   C  G + +A GIL+   A GC P+  T +TLI
Sbjct: 411 LQLMKDMMEHG--CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLI 468

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C + N+D+A +++D +++ G       Y++L+  L + ++L      F  ML  G  
Sbjct: 469 DGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCT 528

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  +++I   C   +V E   L+++++  G    + +     L+ GLC      +A 
Sbjct: 529 PNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVT--LCTLICGLCSNGELDKAY 586

Query: 434 KL 435
           +L
Sbjct: 587 EL 588



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 4/278 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ V  +M  +D  P    YN ++ +  E G    A ++   M  I +YPD+ T+   +
Sbjct: 94  EAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRM 153

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           K FC  GR   A  L   M   GC  N V+Y A++ G  +      A  L  EM K+G  
Sbjct: 154 KSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG-- 211

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+++T+  +I + C KG ++E+  +  ++   G  PN  T +  I+G C +G +DEA 
Sbjct: 212 ICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAA 271

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L++ +V+ G       Y++L+    +  +L EAE    KM+ SGV+P+    + +I   
Sbjct: 272 RLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGF 331

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           C  G +     +  D    GF+   D   +S L+ GLC
Sbjct: 332 CKAGMMQNADKILRDAMFKGFIP--DEFTYSSLINGLC 367



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 149/334 (44%), Gaps = 46/334 (13%)

Query: 82  IWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYK---EEGCVVSVKMMKVIFN- 137
            + A++  ++HS  +YN    + +      +++  ++  K   E GC   +    ++ N 
Sbjct: 379 FYEAMEKGFKHSIILYNT---LVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNG 435

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   L+ +A  +L         PD   +N +I  +C++ +M  A E++  M    + P
Sbjct: 436 LCKMGCLS-DANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITP 494

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ITY +++ G C A +L++    FK M   GC  N++ Y+ L++  C+   +  A+EL 
Sbjct: 495 DVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELF 554

Query: 258 GEMEKEGGDCSPNVVT------------------------------------YTSVIQIF 281
            EM+  G   +P++VT                                    +  +I  F
Sbjct: 555 KEMKTRG--LTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAF 612

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C K  +  A  +  +M    CAP+  T   +I  +C  GN+D A+  + + ++ G V S 
Sbjct: 613 CXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSF 672

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
                ++  L  T RL EA  + + M+ +G+ P+
Sbjct: 673 TTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPE 706



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 146/298 (48%), Gaps = 4/298 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M +  + PD + +N +I + C+KG++  +++L   +    + P++ T+   I
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFI 258

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +G C  G +++A  L + +   G   ++++Y+ L+ G C+   +  A   L +M   G  
Sbjct: 259 QGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSG-- 316

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PN  TY ++I  FC  GMM+ A  IL      G  P+  T S+LI G C +G+++ A 
Sbjct: 317 VEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAM 376

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            +  + +  G   S   Y++LV  L +   + +A +L   M+  G  PD    ++++  L
Sbjct: 377 AVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGL 436

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           C  G + +   +  D    G +  + +   + L+ G C++ +  +A ++   ML   I
Sbjct: 437 CKMGCLSDANGILNDAIAKGCIPDIFT--FNTLIDGYCKQRNMDKAIEILDTMLSHGI 492



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 38/248 (15%)

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           +V    G    L  Y  +++ +   G  E   ++L EM K   D       Y  +++ + 
Sbjct: 29  QVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRK-NVDSKMLEGVYIGIMRDYG 87

Query: 283 GKGMMKEALGILDRMEALGCA-----------------------------------PNRV 307
            KG ++EA+ + +RM+   C                                    P+  
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVY 147

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T +  +K FC+ G    A +L++ +   G   +   Y +++    +     EA  LF +M
Sbjct: 148 THTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEM 207

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           L  G+ PD L  + +I  LC  G V E   L+  + K G   ++ +   ++ + GLCRK 
Sbjct: 208 LKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFT--FNIFIQGLCRKG 265

Query: 428 HSVEAAKL 435
              EAA+L
Sbjct: 266 AIDEAARL 273


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 172/341 (50%), Gaps = 6/341 (1%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPD 163
           ++ Q P    +      + G   +V +  ++ +  C+   + N  M V  ++    LRP 
Sbjct: 202 KLNQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARM-VFDEISRRGLRPS 260

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
            + +N +I  +C   ++     L   M    + PD+ TY ++I G C   R+E+A GLF 
Sbjct: 261 VVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFD 320

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M   G   N V ++ L+DG C+ G ++ AL     M+  G    P+++TY ++I   C 
Sbjct: 321 EMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRG--IRPDLITYNALINGLCR 378

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G +KEA  +L+ M   G  P+++T +TL+ G C +G++D A ++ D++V  G       
Sbjct: 379 DGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVA 438

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           +++L+  L R  R+++AE++   ML++G KPD    +++I   C  G V  G  L ++++
Sbjct: 439 FTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQ 498

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + G +  V +  ++ L+ G C++     A  L   ML   +
Sbjct: 499 RDGRVPGVVT--YNALMNGFCKQGQMKNAKMLLHAMLNMEV 537



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 137/276 (49%), Gaps = 4/276 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P++  +  ++ GFC  G + +A  +F  + R G   ++V+++ L+ G CR  ++E    L
Sbjct: 224 PNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVL 283

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
              ME E    SP+V TY+++I   C +  ++EA G+ D M  +G  PN VT +TLI G 
Sbjct: 284 KSVMESE--RISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQ 341

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G +D A +  + +   G       Y++L+  L R   LKEA KL ++M+ +G KPD 
Sbjct: 342 CKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDK 401

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + ++   C  G +     + + + + G    +D    + L+ GLCR     +A ++ 
Sbjct: 402 ITFTTLMDGCCKDGDMDSALEIKDRMVEEGI--ELDDVAFTALISGLCRDGRVRDAERML 459

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
           + ML        P    +++   K GD ++   L K
Sbjct: 460 KDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLK 495



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 10/225 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC    L  EA  +L +M     +PD I +  ++   C+ GDM +A E+   M   
Sbjct: 372 LINGLCRDGDLK-EARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEE 430

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  D + + ++I G C  GR+ DA  + K M   G   +   Y+ ++D  C+ G ++  
Sbjct: 431 GIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMG 490

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +LL EM+++G    P VVTY +++  FC +G MK A  +L  M  +   PN +T + L+
Sbjct: 491 AKLLKEMQRDGR--VPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILL 548

Query: 314 KGFCVEGNLDEAYQLIDKVVAG--GSVSSGGCYSSLVVELVRTKR 356
            G C  G+      +  K+  G  G VS    Y++LV E ++  +
Sbjct: 549 DGHCKHGS-----SVDFKIFNGEKGLVSDYASYTALVNESIKISK 588



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 122 EEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           EEG  +  V    +I  LC   R+  +A  +L+ M     +PD   Y  VI  FC+KGD+
Sbjct: 429 EEGIELDDVAFTALISGLCRDGRV-RDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDV 487

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
               +L+K M      P ++TY +++ GFC  G++++A  L   M       N + ++ L
Sbjct: 488 KMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNIL 547

Query: 241 LDGICRLGS 249
           LDG C+ GS
Sbjct: 548 LDGHCKHGS 556


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 131/239 (54%), Gaps = 2/239 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++AM VL KM E  + PD + YN++I   C  G+  +A  L+  M    L PD  TY SM
Sbjct: 444 HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSM 503

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I   C + R+E+AC LF  +++ G   N+V Y+AL+DG C+ G ++ A  +L +M  +  
Sbjct: 504 IDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSK-- 561

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +C PN +T+ ++I   C  G +KEA  + ++M  +G  P   T + LI     +G+ D A
Sbjct: 562 NCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHA 621

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           Y    ++++ G+      Y++ +    R  RL +AE + +KM  +GV PD    S +I+
Sbjct: 622 YSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIK 680



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 145/280 (51%), Gaps = 15/280 (5%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E+G + +V     + N   K  +  +A+ V+  M    L P+T  YN +I+ +C+     
Sbjct: 386 EKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN--- 442

Query: 182 AADELMKGMGLID------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
               + K MG+++      + PD++TY S+I G C +G  + A  L  +M   G   +  
Sbjct: 443 ----VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQW 498

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y++++D +C+   +E A +L   +E++G   +PNVV YT++I  +C  G + EA  +L+
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKG--VNPNVVMYTALIDGYCKAGKVDEAHLMLE 556

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +M +  C PN +T + LI G C +G L EA  L +K+V  G   +    + L+  L++  
Sbjct: 557 KMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDG 616

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
               A   F +ML+SG KPD    +  I+  C  G++L+ 
Sbjct: 617 DFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDA 656



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 166/323 (51%), Gaps = 7/323 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++V+  +E G   ++    V+ + LC + +   +A  +L +M E  L P+ I YN +I 
Sbjct: 343 LNLVKEMEETGIKPNIHTYTVLIDSLCSQCKF-EKARELLGQMLEKGLMPNVITYNALIN 401

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            +C++G +  A ++++ M    L P+  TY  +IKG+C +  +  A G+   M       
Sbjct: 402 GYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLP 460

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++V Y++L+DG CR G+ + A  LL  M   G    P+  TYTS+I   C    ++EA  
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG--LVPDQWTYTSMIDSLCKSKRVEEACD 518

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D +E  G  PN V  + LI G+C  G +DEA+ +++K+++   + +   +++L+  L 
Sbjct: 519 LFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLC 578

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              +LKEA  L  KM+  G++P     +++I  L   G     +  ++ +   G  +  D
Sbjct: 579 ADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG--TKPD 636

Query: 413 SDIHSVLLLGLCRKNHSVEAAKL 435
           +  ++  +   CR+   ++A  +
Sbjct: 637 AHTYTTFIQTYCREGRLLDAEDM 659



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 157/310 (50%), Gaps = 8/310 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +D+    K++ C  +V+   V+  +LC   R  +EA+ ++++M E  ++P+   Y  +I 
Sbjct: 308 MDLFVKMKDDECFPTVRTYTVLIKSLCGSER-KSEALNLVKEMEETGIKPNIHTYTVLID 366

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C +     A EL+  M    L P++ITY ++I G+C  G +EDA  + ++M+    + 
Sbjct: 367 SLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSP 426

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y+ L+ G C+  ++ +A+ +L +M +      P+VVTY S+I   C  G    A  
Sbjct: 427 NTRTYNELIKGYCK-SNVHKAMGVLNKMLER--KVLPDVVTYNSLIDGQCRSGNFDSAYR 483

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L  M   G  P++ T +++I   C    ++EA  L D +   G   +   Y++L+    
Sbjct: 484 LLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYC 543

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  ++ EA  +  KML+    P+ L  + +I  LC  G++ E   L E + KIG   +V 
Sbjct: 544 KAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVS 603

Query: 413 SD---IHSVL 419
           +D   IH +L
Sbjct: 604 TDTILIHRLL 613



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 151/336 (44%), Gaps = 38/336 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            + N   +  L +E   V  +M E  + P+   YN ++  +C+ G++  A++ +  +   
Sbjct: 188 TLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEA 247

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD  TY S+I G+C    L+ A  +F  M   GC  N VAY+ L+ G+C    ++ A
Sbjct: 248 GLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEA 307

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++L  +M+ +  +C P V TYT +I+  CG     EAL ++  ME  G  PN  T + LI
Sbjct: 308 MDLFVKMKDD--ECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL---------------VVELVRTKRLK 358
              C +   ++A +L+ +++  G + +   Y++L               VVEL+ +++L 
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425

Query: 359 EAEKLF-------------------SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
              + +                   +KML   V PD +  + +I   C  G     + L 
Sbjct: 426 PNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL 485

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             +   G +   D   ++ ++  LC+     EA  L
Sbjct: 486 SLMNDRGLVP--DQWTYTSMIDSLCKSKRVEEACDL 519



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 180/451 (39%), Gaps = 86/451 (19%)

Query: 30  SPAERFYTHLQKN--PNNIEKTLATVKAKLDSTCVIEVL--HRCFPSQSQMGIRFFIWAA 85
           SP  R Y  L K    +N+ K +  +   L+   + +V+  +     Q + G        
Sbjct: 425 SPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSG-------N 477

Query: 86  LQSSYRHSSFMYNRA---------------CEMSRIKQNPSIIIDVVEAYKEEGCVVSVK 130
             S+YR  S M +R                C+  R+++      D+ ++ +++G   +V 
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEE----ACDLFDSLEQKGVNPNVV 533

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG------------ 178
           M   + +   KA   +EA  +L KM   +  P+++ +N +I   C  G            
Sbjct: 534 MYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKM 593

Query: 179 -----------DMIAADELMKGMGLIDLY------------PDIITYVSMIKGFCNAGRL 215
                      D I    L+K       Y            PD  TY + I+ +C  GRL
Sbjct: 594 VKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRL 653

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
            DA  +   M+ +G + +L  YS+L+ G   LG    A ++L  M   G  C P+  T+ 
Sbjct: 654 LDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG--CEPSQHTFL 711

Query: 276 SVIQI---------------FCGKGMMKE---ALGILDRMEALGCAPNRVTISTLIKGFC 317
           S+I+                 C    M E    + +L++M      PN  +   LI G C
Sbjct: 712 SLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGIC 771

Query: 318 VEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
             GNL  A ++ D +     +S S   +++L+    + K+  EA K+   M+  G  P  
Sbjct: 772 EVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQL 831

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
            +C V+I  L   G+   G  +++++ + G+
Sbjct: 832 ESCKVLICGLYKKGEKERGTSVFQNLLQCGY 862



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 118/243 (48%), Gaps = 4/243 (1%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y +++      G +++   ++  M       N+  Y+ +++G C+LG++E A + + ++ 
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           + G D  P+  TYTS+I  +C +  +  A  + + M   GC  N V  + LI G CV   
Sbjct: 246 EAGLD--PDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +DEA  L  K+       +   Y+ L+  L  ++R  EA  L  +M  +G+KP+    +V
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +I  LC   +  +   L   + + G + +V +  ++ L+ G C++    +A  +   M  
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVIT--YNALINGYCKRGMIEDAVDVVELMES 421

Query: 442 KRI 444
           +++
Sbjct: 422 RKL 424



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 6/205 (2%)

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y +++      G++ E   +   M      PN  T + ++ G+C  GN++EA Q + K+V
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G       Y+SL++   + K L  A K+F++M   G + + +A + +I  LC+  ++ 
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM----LKKRIWLQGP 449
           E   L+  ++      +V +  ++VL+  LC      EA  L + M    +K  I     
Sbjct: 306 EAMDLFVKMKDDECFPTVRT--YTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363

Query: 450 YVDKIVEHLKKSGDEELITNLPKIG 474
            +D +    K     EL+  + + G
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKG 388



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 8/213 (3%)

Query: 69  CFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS 128
           C PSQ        I   L+  Y          C MS + +  +++ +++E   E     +
Sbjct: 703 CEPSQHT--FLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVV-ELLEKMVEHSVTPN 759

Query: 129 VKMM-KVIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADEL 186
            K   K+I  +CE   L   A  V   M   + + P  +++N ++   C+      A ++
Sbjct: 760 AKSYEKLILGICEVGNL-RVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKV 818

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           +  M  +   P + +   +I G    G  E    +F+ + + G   + +A+  ++DG+ +
Sbjct: 819 VDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGK 878

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            G +E   EL   MEK G  C  +  TY+ +I+
Sbjct: 879 QGLVEAFYELFNVMEKNG--CKFSSQTYSLLIE 909


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 144/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD +  +++I E C
Sbjct: 333 HRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G + SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGQMPSV 416



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++    +G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----KGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + V Y+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P+ +TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMPSVVT 418



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 132/286 (46%), Gaps = 4/286 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           R D  +++ +I  + E G +  A E  +       +    T   +++        +   G
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            ++ +   G  A+L  ++ L+   C+ G +  A  +   + K G    P+VV++ +++  
Sbjct: 123 FYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWG--LRPSVVSFNTLMNG 180

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +   G + E   +   M A G  P+  T S LI G C E  +D+A +L D+++  G V +
Sbjct: 181 YIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPN 240

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  +++L+    +  R+  A +++ +ML+  + PD +  + +I  LC  G + +   L +
Sbjct: 241 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLID 300

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           ++   G     D   ++ L+ G C++     A +  + M+++ I L
Sbjct: 301 EMSMKGL--KPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQL 344


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 145/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   ++EDA  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  + D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYVPSV 416



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 3/180 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L  
Sbjct: 242 VTFTTLIDGHCKNGRV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTD 300

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  L PD ITY ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G
Sbjct: 301 EMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 361 RSVDAEKMLREMLSVG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 114/227 (50%), Gaps = 4/227 (1%)

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           G ++    +G  A+L  ++ L+    + G +  A  +   + K G    P+VV++ +++ 
Sbjct: 122 GFYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWG--LRPSVVSFNTLMN 179

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +   G + E   + + M+A G  P+  T S LI G C E  +++A +L D+++  G V 
Sbjct: 180 GYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVP 239

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +G  +++L+    +  R+  A +++ +ML+  + PD +  + +I  LC  G + +   L 
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLT 299

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           +++   G     D   ++ L+ G C++ H   A +  + M+K+ I L
Sbjct: 300 DEMSMKGL--KPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRL 344



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 107/266 (40%), Gaps = 39/266 (14%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ K H           +++ + +L   +      
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWGFY 124

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E  + G   S  +  +  ++  F  +G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 125 EESLEYGYPAS--LYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+LDE +                             RLK A      M ASGV+PD  
Sbjct: 183 KLGDLDEGF-----------------------------RLKNA------MQASGVQPDVY 207

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             SV+I  LC   ++ +   L++++   G +   +    + L+ G C+      A ++ +
Sbjct: 208 TYSVLINGLCKESKMEDANELFDEMLNNGLVP--NGVTFTTLIDGHCKNGRVDLAMEIYK 265

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGD 463
            ML + +       + ++  L K GD
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGD 291



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           KE   +  V    +I  LC++ R + +A  +LR+M    L+P+   Y  +I  FC+KGD+
Sbjct: 339 KENIRLDDVAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397

Query: 181 IAADELMKGMGLIDLYPDIIT 201
               +L+K M      P ++T
Sbjct: 398 WTGSKLLKEMQRDGYVPSVVT 418


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 218/475 (45%), Gaps = 71/475 (14%)

Query: 2   PRFSLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTC 61
           P F  ++ILSS V + + KI A+ F+            Q     I+  + T         
Sbjct: 52  PIFEFNKILSSLVKMNHFKI-AISFSQ-----------QMELKGIQPEMFT--------- 90

Query: 62  VIEVLHRCFPSQSQMGIRFFIWAA-LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDV 116
              +L  CF    Q+   F + A  L+  Y+  +   N      C   ++K+  +    V
Sbjct: 91  -FNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHV 149

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL-RPDTIIYNNVIRLFC 175
           +   ++   +  V    +I  LC+       A+ +LRK+    L RPD I+Y  +I  FC
Sbjct: 150 I---RKRFHLDQVSYGTLINGLCKSGE-TRAALQLLRKIEGLLLVRPDVIMYTAIIDSFC 205

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +   +I A +L   M +  +YP+++T+ S+I GFC  G+L++A GL   M  +    N+ 
Sbjct: 206 KDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVY 265

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV------------------ 277
            ++ L+DG+C+ G +++A  +L  M K+G    PNVVTYTS+                  
Sbjct: 266 TFNILIDGLCKEGEVKKATSVLSVMIKQG--VEPNVVTYTSLMDGYFLVKEVNKAKHVFN 323

Query: 278 -----------------IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
                            I   C   M+ EA+ +   M      PN VT S+LI G C  G
Sbjct: 324 TISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSG 383

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            + + + LID++   G  ++   Y+SL+  L +  ++ +A  L +KM   G++PD    +
Sbjct: 384 RISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYT 443

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            ++  LC  G++ +   +Y+D+   G+   ++  +++V++ GLC++    EA  L
Sbjct: 444 TLVDGLCKNGRLKDAQRIYQDLLCKGY--PLNIRMYTVMINGLCKEGFFDEALSL 496



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 168/337 (49%), Gaps = 13/337 (3%)

Query: 112 IIIDVVEAYKEEGCVVS------VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165
           ++ID  + Y E   +V       V    +I+  C   +L  EA+ +L +M   ++ P+  
Sbjct: 209 LVIDAYDLYSE--MIVKKIYPNVVTFNSLIYGFCIVGQLK-EAVGLLNEMSLNNVNPNVY 265

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            +N +I   C++G++  A  ++  M    + P+++TY S++ G+     +  A  +F  +
Sbjct: 266 TFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTI 325

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
              G   N+ +YS +++G+C+   ++ A++L  EM  +  + +PN VTY+S+I   C  G
Sbjct: 326 SLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLK--NMTPNTVTYSSLIDGLCKSG 383

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            + +   ++D +   G   N +T ++L+ G C    +D+A  L+ K+   G       Y+
Sbjct: 384 RISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYT 443

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           +LV  L +  RLK+A++++  +L  G   +    +VMI  LC  G   E   L   +E  
Sbjct: 444 TLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDN 503

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           G +   D+  +  L+  L + N + +A KL R M+ +
Sbjct: 504 GCMP--DAVTYETLISALFKNNKNGKAVKLLREMIAR 538



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 127/276 (46%), Gaps = 41/276 (14%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+   +K+  S++  +++   E   V    +M   F + E     N+A  V   +    +
Sbjct: 275 CKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKE----VNKAKHVFNTISLRGV 330

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+   Y+ +I   C+   +  A +L K M L ++ P+ +TY S+I G C +GR+ D   
Sbjct: 331 TPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWD 390

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   +   G  AN++ Y++LL+G+C+   +++A+ LL +M+ EG    P++ TYT+++  
Sbjct: 391 LIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEG--IQPDMSTYTTLVDG 448

Query: 281 FCGKGMMK-----------------------------------EALGILDRMEALGCAPN 305
            C  G +K                                   EAL +L +ME  GC P+
Sbjct: 449 LCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPD 508

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
            VT  TLI          +A +L+ +++A  S  SG
Sbjct: 509 AVTYETLISALFKNNKNGKAVKLLREMIARESDCSG 544



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 93/233 (39%), Gaps = 39/233 (16%)

Query: 214 RLEDACGLFK-VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            L+DA   F  ++  +     +  ++ +L  + ++   + A+    +ME +G    P + 
Sbjct: 32  NLDDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKG--IQPEMF 89

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           T+  +I  F     +  A  ++ ++  LG  P+ VT++TL++G C+ G + EA    D V
Sbjct: 90  TFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHV 149

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +                     KR                  D ++   +I  LC  G+ 
Sbjct: 150 IR--------------------KRFH---------------LDQVSYGTLINGLCKSGET 174

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
                L   IE +  L   D  +++ ++   C+    ++A  L   M+ K+I+
Sbjct: 175 RAALQLLRKIEGL-LLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIY 226


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 195/392 (49%), Gaps = 22/392 (5%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKA 142
             +Q     SS + +  C+  ++ +   ++    E   + GC++ V     ++  LC K 
Sbjct: 522 VGIQPDVTTSSVLIDMLCKKGKVIEANKLL----EVVIQRGCILDVVTCTTLVKGLCMKH 577

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL------IDLY 196
           R++ +A  +  KM +    P+ +    +++  C+ G++  A EL K M        I+  
Sbjct: 578 RIS-KATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCK 636

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+ I+Y  +I G C  GR ++A  LFK MK  G   ++++Y++L+ G CR G  + A  L
Sbjct: 637 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 696

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             EM   G    P+V T++ +I + C +G + EA  +L+ M   GC PN VT +TL+KG 
Sbjct: 697 FNEMVDIG--VQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGL 754

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA------S 370
           C+   + EA QL  K+   G +     Y +L+  L +T  +K A +L  KML+      +
Sbjct: 755 CMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGT 814

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
             KPD ++ S++I  LC  G+  E   L+++++ +G + +V S  ++ L+ G CR     
Sbjct: 815 NFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVIS--YTSLIHGFCRSGKLE 872

Query: 431 EAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +A  L   M+ + + L       ++    K G
Sbjct: 873 DAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEG 904



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A  +  +M +  ++PD    + +I + C+KG +I A++L++ +       D++T  +++
Sbjct: 511 KAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLV 570

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL----LGEMEK 262
           KG C   R+  A  LF  M++ GC  N+V  + L+ G+C+ G+++ ALEL    L +   
Sbjct: 571 KGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSP 630

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G +C PN ++Y+ +I   C  G   EA  +   M+ALG  P+ ++ ++LI GFC  G  
Sbjct: 631 YGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKW 690

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            +A  L +++V  G       +S L+  L +  ++ EA +L   M+  G  P+ +  + +
Sbjct: 691 KDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTL 750

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           ++ LC+  ++ E   L+  ++K+G L  V +  +  L+ GLC+  +   A +L + ML
Sbjct: 751 VKGLCMNDRISEATQLFMKMQKLGCLPDVVT--YGTLMKGLCQTGNIKTALELHKKML 806



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 161/314 (51%), Gaps = 11/314 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K R  +EA  +  +M    + PD I Y  +I  FC  G    A  L   M  +
Sbjct: 464 IIDGLC-KDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDV 522

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ T   +I   C  G++ +A  L +V+ + GC  ++V  + L+ G+C    + +A
Sbjct: 523 GIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKA 582

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM------EALGCAPNRV 307
            +L  +M+K G  C PNVVT  ++++  C  G +K AL +   M        + C PN +
Sbjct: 583 TQLFLKMQKLG--CMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAI 640

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           + S +I G C  G  DEA +L  ++ A G +     Y+SL+    R+ + K+A+ LF++M
Sbjct: 641 SYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEM 700

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           +  GV+PD    SV+I  LC  G+V+E   L E + + G + +  +  ++ L+ GLC  +
Sbjct: 701 VDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVT--YTTLVKGLCMND 758

Query: 428 HSVEAAKLARFMLK 441
              EA +L   M K
Sbjct: 759 RISEATQLFMKMQK 772



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 155/285 (54%), Gaps = 6/285 (2%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +RPD    + +I + C++G +I A+EL++ M       DI+TY ++IKG C   R+ +A 
Sbjct: 343 IRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEAT 402

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG----DCSPNVVTYT 275
            LF  M++ GC  + + Y  L+ G+C+ G++  AL+L  EM  + G     C P +++Y+
Sbjct: 403 WLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYS 462

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I   C      EA  + + M+A G  P+ ++ +TLI GFC+ G  ++A  L ++++  
Sbjct: 463 IIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDV 522

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G        S L+  L +  ++ EA KL   ++  G   D + C+ +++ LC+  ++ + 
Sbjct: 523 GIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKA 582

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
             L+  ++K+G + +V +   + L+ GLC+  +   A +L + ML
Sbjct: 583 TQLFLKMQKLGCMPNVVT--CATLMKGLCQSGNIKIALELHKNML 625



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 140/265 (52%), Gaps = 9/265 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R  +EA  + ++M    + PD I Y ++I  FC  G    A  L   M  I
Sbjct: 645 IIDGLCKCGR-EDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDI 703

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ T+  +I   C  G++ +A  L +VM + GC  N V Y+ L+ G+C    +  A
Sbjct: 704 GVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEA 763

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM------EALGCAPNRV 307
            +L  +M+K G  C P+VVTY ++++  C  G +K AL +  +M            P+ +
Sbjct: 764 TQLFMKMQKLG--CLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVI 821

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           + S +I G C  G  DEA +L  ++ A G + +   Y+SL+    R+ +L++A+ LF++M
Sbjct: 822 SYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEM 881

Query: 368 LASGVKPDGLACSVMIRELCLGGQV 392
           +  GV+ + +  SVMI   C  GQ+
Sbjct: 882 VDQGVQLNAVTYSVMIHGFCKEGQI 906



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 161/330 (48%), Gaps = 46/330 (13%)

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           + +RPD    + +I + C++G +I A+EL++ M       DI+TY ++IKG C   R+ +
Sbjct: 48  YSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISE 107

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG----DCSP---- 269
           A  LF  M++ GC  + + Y  L+ G+C+ G++  AL+L  EM  + G     C P    
Sbjct: 108 ATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLIS 167

Query: 270 -------------------------------NVVTYTSVIQIFCGKGMMKEALGILDRME 298
                                          +V++YTS+I  FC  G  ++A  + + M 
Sbjct: 168 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEML 227

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
            +G  P+  T   LI  FC EG + EA +L++ +V  G +     YS+L+  L    R+ 
Sbjct: 228 DVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRIS 287

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE----DIEKIGFLSSVDSD 414
           EA +LF  M   G +PD +A   +++ LC  G++     L++    D  + G +  +  D
Sbjct: 288 EATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYG-IKCIRPD 346

Query: 415 I--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +   S+L+  LC++   +EA +L   M+++
Sbjct: 347 VTTSSMLIDILCKEGKVIEANELLEVMIQR 376



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 135/241 (56%), Gaps = 7/241 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   +   +A ++  +M +  ++PD   ++ +I + C++G +I A+EL++ M   
Sbjct: 680 LIHGFCRSGKW-KDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQR 738

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+ +TY +++KG C   R+ +A  LF  M++ GC  ++V Y  L+ G+C+ G+++ A
Sbjct: 739 GCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTA 798

Query: 254 LEL----LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           LEL    L +  + G +  P+V++Y+ +I   C  G   EA  +   M+ALG  PN ++ 
Sbjct: 799 LELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISY 858

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           ++LI GFC  G L++A  L +++V  G   +   YS ++    +  ++ +A  LF KM A
Sbjct: 859 TSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEA 916

Query: 370 S 370
           +
Sbjct: 917 N 917



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 166/390 (42%), Gaps = 84/390 (21%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K R  +EA  + ++M    + PD I Y ++I  FC  G    A  L   M  +
Sbjct: 171 IIDGLC-KDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDV 229

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ T   +I  FC  G++ +A  L +VM   GC  ++V YS L+ G+C    +  A
Sbjct: 230 GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEA 289

Query: 254 LELLGEMEKEG-------------GDCS---------------------------PNVVT 273
            +L   M+K G             G C                            P+V T
Sbjct: 290 TQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTT 349

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI---- 329
            + +I I C +G + EA  +L+ M   GC  + VT STLIKG C+E  + EA  L     
Sbjct: 350 SSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQ 409

Query: 330 -----DKVVAGGSVSSGGC--------------------------------YSSLVVELV 352
                   +  G++  G C                                YS ++  L 
Sbjct: 410 KLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLC 469

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           + +R  EA +LF +M A G+ PD ++ + +I   CL G+  +  CL+ ++  +G    V 
Sbjct: 470 KDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVT 529

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +   SVL+  LC+K   +EA KL   ++++
Sbjct: 530 TS--SVLIDMLCKKGKVIEANKLLEVVIQR 557



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 145/300 (48%), Gaps = 21/300 (7%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY---------VSMIKGFC 210
           L PD+  +N +I   C    +      M G+      PDI+TY           +I   C
Sbjct: 6   LFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILC 65

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G++ +A  L +VM + GC  ++V YS L+ G+C    +  A  L   M+K G  C P+
Sbjct: 66  KEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLG--CRPD 123

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRM------EALGCAPNRVTISTLIKGFCVEGNLDE 324
            +TY ++++  C  G +  AL +   M        + C P  ++ S +I G C +   DE
Sbjct: 124 AITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDE 183

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A +L  ++ A G +     Y+SL+     + + ++A+ LF++ML  G++PD     V+I 
Sbjct: 184 ARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLID 243

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             C  G+V+E   L E +   G +  +D   +S L+ GLC K+   EA +L  FM  K++
Sbjct: 244 MFCKEGKVIEANELLEVMVHRGCI--LDIVTYSTLIKGLCMKHRISEATQL--FMSMKKL 299



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 133/268 (49%), Gaps = 19/268 (7%)

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY---------SAL 240
           M L  L+PD  T+  +I   CN  R+ +       + R G   ++V Y         S L
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +D +C+ G +  A ELL  M + G  C  ++VTY+++I+  C +  + EA  +   M+ L
Sbjct: 61  IDILCKEGKVIEANELLEVMIQRG--CILDIVTYSTLIKGLCMEHRISEATWLFMSMQKL 118

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC------YSSLVVELVRT 354
           GC P+ +T  TL+KG C  GN++ A QL  +++         C      YS ++  L + 
Sbjct: 119 GCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD 178

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
           +R  EA +LF +M A G+ PD ++ + +I   C  G+  +  CL+ ++  +G    V + 
Sbjct: 179 RREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTS 238

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              VL+   C++   +EA +L   M+ +
Sbjct: 239 --GVLIDMFCKEGKVIEANELLEVMVHR 264


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 199/399 (49%), Gaps = 14/399 (3%)

Query: 40  QKNPN-NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGI---RFFIWAALQSSYRHSSF 95
           Q+NP+ ++E +L    +++ +  V +VL RC      +G    RFF+WA     + HS  
Sbjct: 58  QRNPHHDLETSLNAFSSEISTNLVEQVLKRC----KNLGFSAHRFFLWAKRIPGFEHSEE 113

Query: 96  MYNRACEMSRIKQNPSIIID-VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
            Y+    +    +  +I+ D ++E  +     ++ +++ ++F    +A L ++A+    +
Sbjct: 114 SYHILVNILGTSRQFAILWDFLIEMRESHDFEINQEIIWLVFRSYSRANLPSDAIRAFDR 173

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M EF LRP     + ++ + C+   +  A +    +          TY  +++G+ + G 
Sbjct: 174 MAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDRVKH-KFEAKAKTYSILVRGWGDIGE 232

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
             +A  +F  M+  GCA +++AY++LL+ +C+ G+++ A ++  E+   G +  P+  +Y
Sbjct: 233 AVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVE--PDACSY 290

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
              I+ +C    +     +LDRM+     PN  T + +IK  C  G +++AYQL+ +++ 
Sbjct: 291 AIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMME 350

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y++++        +  A KL S M+     PD  + +++++ L   G+   
Sbjct: 351 RGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGRFDR 410

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
              ++E + + GF  SV +  +SV++ GLC+K   +E A
Sbjct: 411 ATEIWESMGERGFYPSVST--YSVMIHGLCKKKGKLEEA 447



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 116/267 (43%), Gaps = 9/267 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V +  +  GC + V     +     K    +EA  + R++    + PD   Y   IR +C
Sbjct: 239 VFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVEPDACSYAIFIRAYC 298

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           E  ++ +   ++  M   DL P++ TY  +IK  C  G++EDA  L   M   G + +  
Sbjct: 299 EANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMMERGVSPDAW 358

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           +Y+ +L   C    + RA +L+  M K+  +C P+  +Y  ++++    G    A  I +
Sbjct: 359 SYNTILAYHCEHSEVNRATKLISIMVKD--NCLPDRHSYNMLLKLLVRVGRFDRATEIWE 416

Query: 296 RMEALGCAPNRVTISTLIKGFC-VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
            M   G  P+  T S +I G C  +G L+EA +  + ++  G          L   L+  
Sbjct: 417 SMGERGFYPSVSTYSVMIHGLCKKKGKLEEACRYFETMIDEGIPPYASTIEMLRNRLIGF 476

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSV 381
             L   E L  KM        G +CS+
Sbjct: 477 GLLDHIEILACKM------ERGTSCSI 497


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 187/374 (50%), Gaps = 9/374 (2%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEM---SRIKQNPSIIIDVVEAYKEEGCVVS 128
           +  ++ +RFF WA  Q  YRH   +Y    E+   +++ Q    ++ ++   + E    +
Sbjct: 112 TDERVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEA 171

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
              + V ++   K R    AM  L  M +  + PD  I N  I +      +  A   ++
Sbjct: 172 FGYVMVSYSRAGKLR---NAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLE 228

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M ++++ P++ITY  +IKG+C+  RLEDA  L   M   GC+ + ++Y  ++  +C+  
Sbjct: 229 RMQIVEIXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEK 288

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            + + L LL E   +  +  P+ VTY + + +    G   EAL  L   E      ++V 
Sbjct: 289 RI-KELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVG 347

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S ++  FC EG +D+A ++++++ + G +     Y+S++  L + +++ +A+K+  +M 
Sbjct: 348 YSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMY 407

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G KP+ ++ + ++  LC  G  LE   +    E+  ++ +  +  +SVL+ G  R+  
Sbjct: 408 KHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAIT--YSVLMHGFRREGK 465

Query: 429 SVEAAKLARFMLKK 442
           S EA  L R M+KK
Sbjct: 466 SSEACDLVREMIKK 479



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 4/299 (1%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            +EA+  LR+  E   R D + Y+ ++  FC +G M  A E++  M      PD++TY S
Sbjct: 326 GDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTS 385

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C   +++ A  + + M +HGC  N V+Y+ALL+G+C+ G+   A E++   E+  
Sbjct: 386 VINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXW 445

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PN +TY+ ++  F  +G   EA  ++  M   G  P  V I+ LI+  C E  +DE
Sbjct: 446 W--IPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDE 503

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A + +++ +  G   +   +++++    +   L+ A  L   M  S   PD +  + +I 
Sbjct: 504 AKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIID 563

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
            L   G++ E   L   + ++G++ +  +  +  ++   CR     +  KL   ML ++
Sbjct: 564 ALGKKGRIEEATKLAMKMLRVGWIPTPVT--YRTVIHQYCRMGRVEDLLKLLEKMLSRQ 620



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 154/352 (43%), Gaps = 76/352 (21%)

Query: 115 DVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++V     +GC+  V     VI  LC++ R  ++A  +LR+M +   +P+T+ Y  ++  
Sbjct: 366 EIVNEMFSKGCIPDVVTYTSVINGLCQE-RKVDQAKKMLRQMYKHGCKPNTVSYTALLNG 424

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM-------- 225
            C+ G+ + A E+M         P+ ITY  ++ GF   G+  +AC L + M        
Sbjct: 425 LCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPT 484

Query: 226 --------------------KR-------HGCAANLVAYSALLDGICRLGSMERALELLG 258
                               KR       +GCA N+V ++ ++ G C+   +E AL LL 
Sbjct: 485 PVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLD 544

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC- 317
           +M        P+VVTYT++I     KG ++EA  +  +M  +G  P  VT  T+I  +C 
Sbjct: 545 DMYLSNK--HPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCR 602

Query: 318 ---VE-----------------------------GNLDEAYQLIDKVVAGGS-VSSGGCY 344
              VE                             GNL++AY+L+ KV+   S + +  C+
Sbjct: 603 MGRVEDLLKLLEKMLSRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCH 662

Query: 345 SSLVVELVRTKRLK-EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
             +++E   +K +   +  +  +M    + PD   C  + ++L L G+  E 
Sbjct: 663 --MLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEA 712



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 8/218 (3%)

Query: 124 GCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC V+V     VI   C+K  L   A+ +L  M   +  PD + Y  +I    +KG +  
Sbjct: 515 GCAVNVVNFTTVIHGFCQKDDL-EAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEE 573

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSALL 241
           A +L   M  +   P  +TY ++I  +C  GR+ED   L  K++ R  C     AY+ ++
Sbjct: 574 ATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRT---AYNQVI 630

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           + +C  G++E+A +LLG++ +       N  T   +I+ +  KG+   +  +  RM    
Sbjct: 631 EKLCSFGNLEQAYKLLGKVLRTASKIDAN--TCHMLIESYLSKGIPLMSYNVACRMFNRN 688

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             P+      + K   +EG  +EA +LI + V  G +S
Sbjct: 689 LIPDLKLCEKVSKKLMLEGKSEEADKLILRFVERGRIS 726


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 146/264 (55%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYMPSV 416



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMID----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A +  G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMQASGVQPDVYTYSVLINGLCKESKM-DDANELFDEMIDNGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M KE  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            ++G  P   T + +I  FC +G++    +L+ ++   G + S
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPS 415


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 146/264 (55%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYMPSV 416



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A +  G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMQASGVQPDVYTYSVLINGLCKESKM-DDANELFDEMLDNGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M KE  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            ++G  P   T + +I  FC +G++    +L+ ++   G + S
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPS 415


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 194/421 (46%), Gaps = 66/421 (15%)

Query: 74  SQMGIRFFIWAALQSSYRHSSFMY-------------NRA-----------CEMSRIKQN 109
           S + + FF WA     +R+   +Y              RA            E+ ++K+ 
Sbjct: 134 SMVALSFFYWAVGFPKFRYFMRLYIVCTMSLVGKCNLERAHEVVECMVGVFAEIGKLKEA 193

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
             +I+D+    + +G V++ ++M  I  +  + RL   A  V  +M    + PD+  Y  
Sbjct: 194 VDMILDM----RNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKY 249

Query: 170 VIRLFCEKGDMIAAD----ELMKGMGLID------------------------------- 194
           +I  +C  G+++ AD    E+M+   ++D                               
Sbjct: 250 IIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMG 309

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           L P++I Y SMI G C  G ++ A  L + M ++G   N+  +++L+ G+C+ G  ERA 
Sbjct: 310 LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAF 369

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L  ++ +   +  PNV TYT++I  +C +  +  A  + +RM+  G  PN  T +TLI 
Sbjct: 370 RLFLKLIR-SDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 428

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  GN  +AY+L++ +   G   +   Y+S+V  L +  R +EA KL +    + ++ 
Sbjct: 429 GHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEA 488

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           DG+  +++I E C    + +       + K+GF    D  +++ L+   CR+N   ++ K
Sbjct: 489 DGVTYTILISEQCKRADMNQALVFLNKMFKVGF--QPDIHLYTTLIAAFCRQNMMKDSEK 546

Query: 435 L 435
           L
Sbjct: 547 L 547



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 138/285 (48%), Gaps = 3/285 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C++ +L+   M +  +M E  L P+T  Y  +I   C+ G+   A ELM+ M   
Sbjct: 391 MISGYCKEEKLSRAEM-LFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNE 449

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             +P+  TY S++ G C  GR E+A  L     ++   A+ V Y+ L+   C+   M +A
Sbjct: 450 GFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQA 509

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L  L +M K G    P++  YT++I  FC + MMK++  + D +  LG AP + T +++I
Sbjct: 510 LVFLNKMFKVGFQ--PDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMI 567

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C E  +  A +   K+   G       Y +L+  L +  RL EA +L+  M+  G+ 
Sbjct: 568 CGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLS 627

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
           P  +    +  E C          + E + K  ++ +V + I  +
Sbjct: 628 PCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTVHTLIRKL 672



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 169/396 (42%), Gaps = 74/396 (18%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E G VV    + +I    CEK+ L N A+W   K+ +  L P+ I Y+++I   C++G +
Sbjct: 272 ERGFVVDNATLTLIITAFCEKS-LVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSV 330

Query: 181 IAADELMKGM-----------------GLI------------------DLY-PDIITYVS 204
             A EL++ M                 GL                   D Y P++ TY +
Sbjct: 331 KQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTA 390

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           MI G+C   +L  A  LF+ MK  G   N   Y+ L+DG C+ G+  +A EL+  M  EG
Sbjct: 391 MISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEG 450

Query: 265 ---GDCSPNV------------------------------VTYTSVIQIFCGKGMMKEAL 291
                C+ N                               VTYT +I   C +  M +AL
Sbjct: 451 FFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQAL 510

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
             L++M  +G  P+    +TLI  FC +  + ++ +L D+V+  G   +   Y+S++   
Sbjct: 511 VFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGY 570

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            R K++  A K F KM   G  PD ++   +I  LC   ++ E   LY+ +   G     
Sbjct: 571 CREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGL---S 627

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
             ++  V L     K     +A +    L K++W++
Sbjct: 628 PCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIR 663



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 10/199 (5%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C++A + N+A+  L KM +   +PD  +Y  +I  FC +  M  +++L   +  + L P 
Sbjct: 501 CKRADM-NQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPT 559

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
             TY SMI G+C   ++  A   F+ M  HGCA + ++Y AL+ G+C+   ++ A +L  
Sbjct: 560 KETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYD 619

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
            M  +G   SP  VT  ++   +C       A+ IL+R+          T+ TLI+  C 
Sbjct: 620 TMIDKG--LSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIR---TVHTLIRKLCC 674

Query: 319 EGNLDEA----YQLIDKVV 333
           E  +  A    ++L+DK V
Sbjct: 675 EKKVALAALFFHKLLDKEV 693


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 177/357 (49%), Gaps = 12/357 (3%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + N  C+++R+++   +I  +      +          ++  LC+  R+ ++A+  + 
Sbjct: 84  STIINWLCKLNRVEEARELIEKMARYAPPDALTYG----PIVERLCKTKRI-DDALATVE 138

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M    ++PD  IYN V+   C++  +  A  L + M    + P+++TY ++I G C A 
Sbjct: 139 EMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAW 198

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           R+E A  LFK M   G     V+Y+ L+DG C+   +  A ++  +M +   +C PNVVT
Sbjct: 199 RIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVR--SNCVPNVVT 256

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YT++I      G ++ A  +LD M   G  PN  T S LI GFC    +DEA++L++++V
Sbjct: 257 YTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMV 316

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G   +   Y+ L+  L R  +L++A KLF  M      P  +  + ++R LC   Q+ 
Sbjct: 317 TQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLD 376

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
               LY ++   G     D+  +  L  GL R     EA +L   M K ++  + P+
Sbjct: 377 GAHRLYAEMIAKG--CPPDAITYDTLAWGLTRAGKVHEAQEL---MEKMKLTKRNPF 428



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 125/243 (51%), Gaps = 3/243 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R+   A  + ++M      P  + YN +I  FC+K D++AA ++   M   
Sbjct: 190 LINGLCKAWRIET-AYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRS 248

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +  P+++TY ++I G   +G+++ A  +   M + G   N+  YS L+DG C++  ++ A
Sbjct: 249 NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEA 308

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +LL +M  +G   +P VVTY  ++   C    +++A  +   M    C P  VT +TL+
Sbjct: 309 HKLLEQMVTQG--IAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLL 366

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           +  C    LD A++L  +++A G       Y +L   L R  ++ EA++L  KM  +   
Sbjct: 367 RALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRN 426

Query: 374 PDG 376
           P G
Sbjct: 427 PFG 429



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 138/310 (44%), Gaps = 36/310 (11%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           Y  +I   C+ G+   A +L+  M L       I Y ++I   C   R+E+A  L + M 
Sbjct: 48  YGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMA 107

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-------------GDC------ 267
           R+    + + Y  +++ +C+   ++ AL  + EM   G             G C      
Sbjct: 108 RYA-PPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVE 166

Query: 268 --------------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
                         +PNVVTY ++I   C    ++ A  +   M   G  P  V+ +TLI
Sbjct: 167 EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 226

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC + +L  A  + DK+V    V +   Y++L+  L ++ +++ A ++   M+  GV 
Sbjct: 227 DGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVT 286

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    S +I   C   +V E   L E +   G   +V +  +++LL  LCR +   +A 
Sbjct: 287 PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVT--YNILLNSLCRADKLEDAF 344

Query: 434 KLARFMLKKR 443
           KL R M ++R
Sbjct: 345 KLFRGMAQRR 354



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 130/273 (47%), Gaps = 5/273 (1%)

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M L  + P   T+ ++  GF  AGRLE    +++ M   G       Y  L+  +C++G+
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
            + A +LL  M  +        + Y+++I   C    ++EA  ++++M A    P+ +T 
Sbjct: 61  FDEAYKLLHTMRLK--RFKRKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAPPDALTY 117

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
             +++  C    +D+A   ++++   G       Y+ ++  L + ++++EA  LF KM+ 
Sbjct: 118 GPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVK 177

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
             + P+ +  + +I  LC   ++   + L++++   G++ +  S  ++ L+ G C+K   
Sbjct: 178 QRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVS--YNTLIDGFCKKKDL 235

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           V A  +   M++            +++ L KSG
Sbjct: 236 VAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSG 268


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 212/442 (47%), Gaps = 24/442 (5%)

Query: 24  LHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIW 83
            HF  +     F   LQ  PN++  T +T+   L S   I    + F    +MG    + 
Sbjct: 28  FHFAFSVLGNMFKLGLQ--PNHV--TFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVI 83

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR 143
                     S + N  C+M     + ++ I +++  +E+GC  +V +   I +   K +
Sbjct: 84  TY--------STIINGLCKMG----STTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDK 131

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           L  EAM  L +M    + P+ + Y++++  FC  G    A  L K M   ++ PD +T+ 
Sbjct: 132 LITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFN 191

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            ++ G    G + +A  +F+ M   G   N+  Y+AL+DG C    M+ A +L   M ++
Sbjct: 192 ILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRK 251

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G  C+P+V +Y  +I+  C  G + EA G+L  M      P+ VT STL+KGFC +G   
Sbjct: 252 G--CAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQ 309

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +A +L++++ + G +     YS ++  L +   L EA +L   M  S ++P+    +++I
Sbjct: 310 DAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILI 369

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLK 441
           + +C  G++     L+ ++    F+  +  D+  ++V++ GL +   S EA +L R M  
Sbjct: 370 QGMCNFGKLEAARELFSNL----FVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAV 425

Query: 442 KRIWLQGPYVDKIVEHLKKSGD 463
                     + I++   ++GD
Sbjct: 426 HGCLPNSCTYNVIIQGFLRNGD 447



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC  SV+   ++    C+  R+ +EA  +L +M    L PDT+ Y+ +++ FC+ G   
Sbjct: 251 KGCAPSVRSYNILIKGHCKSGRI-DEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQ 309

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L++ M    L PD++TY  ++ G C  G L++A  L K M+      N+  Y+ L+
Sbjct: 310 DAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILI 369

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G+C  G +E A EL   +  +G    P+VVTYT +I      G+  EA  +   M   G
Sbjct: 370 QGMCNFGKLEAARELFSNLFVKG--IQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHG 427

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           C PN  T + +I+GF   G+   A +LI+++V  G  +    +  L
Sbjct: 428 CLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQML 473



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 6/255 (2%)

Query: 190 MGLIDLYPDIITYVSMIKGFC--NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           M L ++ PD+ T   +I  FC  N      A  +   M + G   N V +S LL+G+   
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             +  A++L  EM K G +  P+V+TY+++I   C  G    A+ +L +ME  GC PN V
Sbjct: 61  AKIIDAVKLFDEMVKMGYE--PDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVV 118

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
             ST+I   C +  + EA + + ++V  G   +   YSS++       R  EA  LF +M
Sbjct: 119 VYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQM 178

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           +   V PD +  ++++  L   G +LE  C++E + + G   +V++  ++ L+ G C ++
Sbjct: 179 VERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNT--YNALMDGYCSQS 236

Query: 428 HSVEAAKLARFMLKK 442
              EA KL   M++K
Sbjct: 237 QMDEAQKLFNIMVRK 251



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 152/326 (46%), Gaps = 40/326 (12%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++   C   R +NEA  + ++M E ++ PDT+ +N ++    ++G ++ A  + +
Sbjct: 153 VTYSSILHGFCNLGR-SNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFE 211

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P++ TY +++ G+C+  ++++A  LF +M R GCA ++ +Y+ L+ G C+ G
Sbjct: 212 TMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSG 271

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ A  LL EM  +    +P+ VTY+++++ FC  G  ++A  +L+ M + G  P+ +T
Sbjct: 272 RIDEAKGLLAEMSHKA--LTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMT 329

Query: 309 IST-----------------------------------LIKGFCVEGNLDEAYQLIDKVV 333
            S                                    LI+G C  G L+ A +L   + 
Sbjct: 330 YSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLF 389

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G       Y+ ++  L++     EA +LF  M   G  P+    +V+I+     G   
Sbjct: 390 VKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTS 449

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVL 419
               L E++   GF  S DS    +L
Sbjct: 450 NAGRLIEEMVGRGF--SADSSTFQML 473


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 151/275 (54%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 144 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 203

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 204 GLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQS--L 261

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 262 SPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFE 321

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML++G+KPD    +++I E C
Sbjct: 322 HRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFC 381

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V  G  L +++++ G + SV +  ++VL+ G
Sbjct: 382 KKGDVWTGSKLLKEMQRDGHVPSVVT--YNVLMNG 414



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 4/231 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A    G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 185 AMHASGVQPDVYTYSVLINGLCKESKM-DDANELFDEMLDKGLVPNGVTFTTLIDGHCKS 243

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 244 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITY 303

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M +E  +   + V YT++I   C +G   +A  +L  M
Sbjct: 304 TTLIDGCCKEGDLETAFEHRKRMIQE--NIRLDDVAYTALISGLCQEGRYLDAEKVLREM 361

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            + G  P+  T + +I  FC +G++    +L+ ++   G V S   Y+ L+
Sbjct: 362 LSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 114/240 (47%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    +  +L+
Sbjct: 54  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKL----KYFKLV 109

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC +G ++ A  + + +   G  P+ V+ +TL+ G
Sbjct: 110 WGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNG 169

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   + A G       YS L+  L +  ++ +A +LF +ML  G+ P+
Sbjct: 170 YIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPN 229

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 230 GVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQAHDL 287



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            V    +I  LC++ R  + A  VLR+M    L+PDT  Y  +I  FC+KGD+    +L+
Sbjct: 335 DVAYTALISGLCQEGRYLD-AEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLL 393

Query: 188 KGMGLIDLYPDIITYVSMIKG 208
           K M      P ++TY  ++ G
Sbjct: 394 KEMQRDGHVPSVVTYNVLMNG 414


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 171/329 (51%), Gaps = 4/329 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++V++   E+ C   V    ++           +AM +L +M     +PD + YN ++  
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C++G +  A + +  M      P++IT+  +++  C+ GR  DA  L   M R GC+ +
Sbjct: 61  MCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPS 120

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V ++ L++ +CR G + RA+++L +M   G  C+PN ++Y  ++  FC +  M  A+  
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEKMPTHG--CTPNSLSYNPLLHGFCKEKKMDRAIQY 178

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L+ M + GC P+ VT +T++   C +G +D A +L++++ + G       Y++++  L +
Sbjct: 179 LEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSK 238

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             +  +A +L  +M   G+KPD +  S +I  L   G+V E    + D+E  GF    ++
Sbjct: 239 VGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVE--GFGVKPNA 296

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             ++ ++ GLC+   +  A     +M+ K
Sbjct: 297 FTYNSIMFGLCKAQQTDRAIDFLAYMISK 325



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 137/262 (52%), Gaps = 2/262 (0%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  SV    ++ N   +  L   A+ +L KMP     P+++ YN ++  FC++  M  
Sbjct: 115 KGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDR 174

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A + ++ M     YPDI+TY +M+   C  G+++ A  L   +   GC+  L+ Y+ ++D
Sbjct: 175 AIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVID 234

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+ ++G  ++A+ELL EM  +G    P+V+TY+S+I     +G ++EA+     +E  G 
Sbjct: 235 GLSKVGKTDQAVELLHEMRGKG--LKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGV 292

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN  T ++++ G C     D A   +  +++ G   +   Y+ L+  +      KEA +
Sbjct: 293 KPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALE 352

Query: 363 LFSKMLASGVKPDGLACSVMIR 384
           L +++ + GV     A  V++R
Sbjct: 353 LLNELCSRGVVKKSSAEQVVVR 374


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 170/325 (52%), Gaps = 4/325 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V+E     GC+  V    ++     K     +AM +L +M +    PD + YN V+   C
Sbjct: 188 VLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGIC 247

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G +  A E +K +      P+ ++Y  ++KG   A R EDA  L + M   GC  N+V
Sbjct: 248 QEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVV 307

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L+  +CR G +E A+E+L +M + G  C+PN ++Y  ++  FC +  + +A+  ++
Sbjct: 308 TFNMLISFLCRRGLVEPAMEVLEQMPQYG--CTPNSLSYNPLLHAFCKQKKIHKAMEFVE 365

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M + GC P+ V+ +TL+   C  G +D A +L+ ++   G       Y++++  L +  
Sbjct: 366 LMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAG 425

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           + KEA +L  +M + G++PD +  S +   LC   ++ E    +  ++ +G   +  + +
Sbjct: 426 KTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPT--AAL 483

Query: 416 HSVLLLGLCRKNHSVEAAKLARFML 440
           ++ +LLGLC++  +  A  L  +M+
Sbjct: 484 YNAILLGLCKRRETHNAIDLFAYMI 508



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 164/345 (47%), Gaps = 43/345 (12%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           + +    C+ S  KQ     + +++   ++GC   +    V+ N +C++ R+  +AM  L
Sbjct: 205 TILLEATCKRSGYKQ----AMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRV-EDAMEFL 259

Query: 153 RKMPEFDLRPDTIIYNNVIR-----------------------------------LFCEK 177
           + +P +   P+T+ YN V++                                     C +
Sbjct: 260 KNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRR 319

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+++ M      P+ ++Y  ++  FC   ++  A    ++M   GC  ++V+Y
Sbjct: 320 GLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSY 379

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + LL  +CR G ++ A+ELL +++ +G  CSP +++Y +VI      G  KEAL +LD M
Sbjct: 380 NTLLTALCRNGEVDVAIELLHQLKDKG--CSPVLISYNTVIDGLTKAGKTKEALELLDEM 437

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
            + G  P+ +T ST+  G C E  ++EA +   KV   G   +   Y+++++ L + +  
Sbjct: 438 TSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRET 497

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
             A  LF+ M++SG  P+    ++++  L   G V E   L+  +
Sbjct: 498 HNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQL 542



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 143/272 (52%), Gaps = 8/272 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD ++YN ++  +C  G + AA  L+  M    + PD  TY ++I+G C  GR  +A  +
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADM---PVEPDAYTYNTLIRGLCGRGRTSNALAV 188

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M R GC  ++V Y+ LL+  C+    ++A++LL EM  +G  C+P++VTY  V+   
Sbjct: 189 LEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKG--CAPDIVTYNVVLNGI 246

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C +G +++A+  L  + + GC PN V+ + ++KG       ++A +L++++   G   + 
Sbjct: 247 CQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNV 306

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             ++ L+  L R   ++ A ++  +M   G  P+ L+ + ++   C   ++ +     E 
Sbjct: 307 VTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVEL 366

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           +   G    + S  ++ LL  LCR N  V+ A
Sbjct: 367 MVSRGCYPDIVS--YNTLLTALCR-NGEVDVA 395



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 136/257 (52%), Gaps = 2/257 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E    +GC  +V    ++ +   +  L   AM VL +MP++   P+++ YN ++  FC
Sbjct: 293 LMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFC 352

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++  +  A E ++ M     YPDI++Y +++   C  G ++ A  L   +K  GC+  L+
Sbjct: 353 KQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLI 412

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           +Y+ ++DG+ + G  + ALELL EM  +G    P+++TY+++    C +  ++EA+    
Sbjct: 413 SYNTVIDGLTKAGKTKEALELLDEMTSKG--LQPDIITYSTIASGLCREDRIEEAVRTFC 470

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +++ +G  P     + ++ G C       A  L   +++ G + +   Y+ LV  L    
Sbjct: 471 KVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEG 530

Query: 356 RLKEAEKLFSKMLASGV 372
            +KEA +LF+++ + GV
Sbjct: 531 LVKEARELFAQLCSRGV 547



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 150/301 (49%), Gaps = 12/301 (3%)

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I+  C  G    A  ++   G     PD++ Y +M+ G+C AG+L+ A  L   M    
Sbjct: 110 LIKKLCASGRTADARRVLAASG-----PDVMVYNAMVAGYCGAGQLDAARRLVADMP--- 161

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              +   Y+ L+ G+C  G    AL +L +M + G  C P+VVTYT +++  C +   K+
Sbjct: 162 VEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRG--CLPDVVTYTILLEATCKRSGYKQ 219

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A+ +LD M   GCAP+ VT + ++ G C EG +++A + +  + + G   +   Y+ ++ 
Sbjct: 220 AMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLK 279

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L   +R ++AEKL  +M   G  P+ +  +++I  LC  G V     + E + + G   
Sbjct: 280 GLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYG--C 337

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469
           + +S  ++ LL   C++    +A +    M+ +  +      + ++  L ++G+ ++   
Sbjct: 338 TPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIE 397

Query: 470 L 470
           L
Sbjct: 398 L 398


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 183/412 (44%), Gaps = 81/412 (19%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C M + ++   I+    E  +  G V  V    V+ +   KA   N A+ VL +M    +
Sbjct: 148 CRMGKTRKAAKIL----EVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SV 200

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD + YN ++R  C+ G +  A E++  M   D YPD+ITY  +I+  C    +  A  
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMK 260

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN---------- 270
           L   M+  GC  ++V Y+ L++GIC+ G ++ A++ L +M   G  C PN          
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG--CQPNVITHNIILRS 318

Query: 271 -------------------------VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
                                    VVT+  +I   C KG++  A+ IL++M   GC PN
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPN 378

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGG----------------------------- 336
            ++ + L+ GFC E  +D A + ++++V+ G                             
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILN 438

Query: 337 SVSSGGC------YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
            +SS GC      Y++++  L +  +  +A KL  +M A  +KPD +  S ++  L   G
Sbjct: 439 QLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREG 498

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +V E    + + E++G   +  +   + ++LGLC+   +  A     +M+ +
Sbjct: 499 KVDEAIKFFHEFERMGVRPNAVT--FNSIMLGLCKTRQTDRAIDFLVYMINR 548



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 143/268 (53%), Gaps = 13/268 (4%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAAD---ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           PD I    +IR FC  G    A    E+++G G +   PD+ITY  MI G+C AG + +A
Sbjct: 135 PDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAV---PDVITYNVMISGYCKAGEINNA 191

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
                V+ R   + ++V Y+ +L  +C  G +++A+E+L  M +   DC P+V+TYT +I
Sbjct: 192 ---LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR--DCYPDVITYTILI 246

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
           +  C    + +A+ +LD M   GC P+ VT + L+ G C EG LDEA + ++ + + G  
Sbjct: 247 EATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQ 306

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   ++ ++  +  T R  +AEKL + ML  G  P  +  +++I  LC  G +     +
Sbjct: 307 PNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDI 366

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
            E + K G     +S  ++ LL G C++
Sbjct: 367 LEKMPKHG--CQPNSLSYNPLLHGFCKE 392



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 140/259 (54%), Gaps = 7/259 (2%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           NN +R     G++    + ++ M      PDII   ++I+GFC  G+   A  + +V++ 
Sbjct: 106 NNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEG 165

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   +++ Y+ ++ G C+ G +  AL +L  M       SP+VVTY ++++  C  G +
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRMS-----VSPDVVTYNTILRSLCDSGKL 220

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           K+A+ +LDRM    C P+ +T + LI+  C +  + +A +L+D++   G       Y+ L
Sbjct: 221 KQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVL 280

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           V  + +  RL EA K  + M +SG +P+ +  ++++R +C  G+ ++   L  D+ + GF
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340

Query: 408 LSSVDSDIHSVLLLGLCRK 426
             SV +   ++L+  LCRK
Sbjct: 341 SPSVVT--FNILINFLCRK 357



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 131/251 (52%), Gaps = 4/251 (1%)

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +G   SV    ++ N LC K  L   A+ +L KMP+   +P+++ YN ++  FC++  M 
Sbjct: 338 KGFSPSVVTFNILINFLCRKG-LLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMD 396

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A E ++ M     YPDI+TY +M+   C  G++EDA  +   +   GC+  L+ Y+ ++
Sbjct: 397 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG+ + G   +A++LL EM  +  D  P+ +TY+S++     +G + EA+      E +G
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAK--DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN VT ++++ G C     D A   +  ++  G   +   Y+ L+  L      KEA 
Sbjct: 515 VRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEAL 574

Query: 362 KLFSKMLASGV 372
           +L +++   G+
Sbjct: 575 ELLNELCNKGL 585


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 157/310 (50%), Gaps = 8/310 (2%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           K+I NLC + R  ++A  VLR         D   YN ++  +C  G + AA  L+  M  
Sbjct: 79  KLIRNLCRRGR-TSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM-- 135

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             + PD  TY  +I+G C+ GR+ DA  L   M + GC  ++V Y+ LL+ +C+      
Sbjct: 136 -PVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGE 194

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+ +L EM  +G  C+PN+VTY  +I   C +G + +A  IL+R+ + G  P+ V+ +T+
Sbjct: 195 AMNVLDEMRAKG--CTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTV 252

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +KG C     D+   L  ++V    V +   +  LV    R   ++ A ++  +M   G 
Sbjct: 253 LKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGC 312

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            P+   C+++I  +C  G+V + +    ++   G   + D+  ++ +L GLCR      A
Sbjct: 313 TPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYG--CNPDTISYTTVLRGLCRAGRWEHA 370

Query: 433 AKLARFMLKK 442
            +L   M++K
Sbjct: 371 KELLPEMVRK 380



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 170/362 (46%), Gaps = 11/362 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+    +++ D+++     GC  SV    V+     K+    EAM VL +M     
Sbjct: 152 CDRGRVGDALALLDDMLQ----RGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGC 207

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + YN +I   C +G +  A E++  +      PDI++Y +++KG C A R +D   
Sbjct: 208 TPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKV 267

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M    C  N V +  L+   CR G +ERA+++L +M + G  C+PN      VI  
Sbjct: 268 LFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG--CTPNTTLCNIVINA 325

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G + +A   L+ M   GC P+ ++ +T+++G C  G  + A +L+ ++V      +
Sbjct: 326 ICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPN 385

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              +++ +  L +   +++A KL   M   G     +  + ++   C+ G+V     L+ 
Sbjct: 386 EVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFN 445

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           ++         ++  ++ LL GLC       AA+L   M++K   L     + +V    +
Sbjct: 446 NLP-----CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQ 500

Query: 461 SG 462
            G
Sbjct: 501 KG 502



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 141/292 (48%), Gaps = 32/292 (10%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I V++   + GC  +  +  ++ N +C++ R+ ++A   L  M  +   PDTI Y  V+R
Sbjct: 301 IQVLQQMSQHGCTPNTTLCNIVINAICKQGRV-DDAYDFLNNMGMYGCNPDTISYTTVLR 359

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G    A EL+  M   +  P+ +T+ + I   C  G +E A  L ++M  +GC+ 
Sbjct: 360 GLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSV 419

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGG--------------------------- 265
            +V Y+AL+ G C  G ++ ALEL   +  E                             
Sbjct: 420 GIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGM 479

Query: 266 ---DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
              DC  N VT+  ++  FC KG ++EA+ ++++M   GC PN +T +TL+ G   + N 
Sbjct: 480 IQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNS 539

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           +EA +L+  +V+ G       YSS+V  L R  R +EA ++   +   G++P
Sbjct: 540 EEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRP 591



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 138/271 (50%), Gaps = 7/271 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD  +   +IR  C +G    A  +++         D+  Y +++ G+C  GRL+ A  L
Sbjct: 72  PDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRL 131

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M       +   Y+ ++ G+C  G +  AL LL +M + G  C P+VVTYT +++  
Sbjct: 132 IASMP---VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRG--CQPSVVTYTVLLEAV 186

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C      EA+ +LD M A GC PN VT + +I G C EG +D+A ++++++ + G     
Sbjct: 187 CKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDI 246

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++++  L   +R  + + LF++M+     P+ +   +++R  C GG V     + + 
Sbjct: 247 VSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQ 306

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           + + G   + ++ + ++++  +C++    +A
Sbjct: 307 MSQHG--CTPNTTLCNIVINAICKQGRVDDA 335



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 141/282 (50%), Gaps = 11/282 (3%)

Query: 133 KVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V FN     LC+K  L  +A+ ++  MPE+      + YN ++  FC +G + +A EL 
Sbjct: 386 EVTFNTFICILCQKG-LIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELF 444

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             +      P+ ITY +++ G C+A RL+ A  L   M +  C  N V ++ L+   C+ 
Sbjct: 445 NNL---PCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQK 501

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +E A+EL+ +M + G  C+PN++T+ +++         +EAL +L  + + G + + +
Sbjct: 502 GFVEEAMELVNQMMEHG--CTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTI 559

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S+++     E   +EA Q++  V   G     G Y+ ++  L +     +A   F+ M
Sbjct: 560 TYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYM 619

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
           +++G  P+     ++I  L   G + E   +  ++   G LS
Sbjct: 620 VSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVLS 661



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 67/151 (44%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++V    E GC  ++     + +   K   + EA+ +L  +    +  DTI Y++V+ +
Sbjct: 508 MELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDV 567

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
              +     A +++  +  + + P +  Y  ++   C     + A   F  M  +GC  N
Sbjct: 568 LSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPN 627

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEG 264
              Y  L++G+   G ++ A  +L E+  +G
Sbjct: 628 ESTYIILIEGLAHEGLLKEARYVLSELYAKG 658


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 178/397 (44%), Gaps = 77/397 (19%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  +  G V  V    V+ +   KA   N A+ VL +M    + PD + YN ++R  C
Sbjct: 159 ILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLC 215

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A E++  M   D YPD+ITY  +I+  C    +  A  L   M+  GC  ++V
Sbjct: 216 DSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVV 275

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPN------------------------- 270
            Y+ L++GIC+ G ++ A++ L +M   G  C PN                         
Sbjct: 276 TYNVLVNGICKEGRLDEAIKFLNDMPSSG--CQPNVITHNIILRSMCSTGRWMDAEKLLA 333

Query: 271 ----------VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
                     VVT+  +I   C KG++  A+ IL++M   GC PN ++ + L+ GFC E 
Sbjct: 334 DMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEK 393

Query: 321 NLDEAYQLIDKVVAGG-----------------------------SVSSGGC------YS 345
            +D A + ++++V+ G                              +SS GC      Y+
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           +++  L +  +  +A KL  +M A  +KPD +  S ++  L   G+V E    + + E++
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           G   +  +   + ++LGLC+   +  A     FM+ +
Sbjct: 514 GIRPNAVT--FNSIMLGLCKSRQTDRAIDFLVFMINR 548



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 150/280 (53%), Gaps = 4/280 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + +++  ++ GC   V    V+ N +C++ RL +EA+  L  MP    +P+ I +N ++R
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL-DEAIKFLNDMPSSGCQPNVITHNIILR 317

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G  + A++L+  M      P ++T+  +I   C  G L  A  + + M +HGC  
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N ++Y+ LL G C+   M+RA+E L  M   G  C P++VTY +++   C  G +++A+ 
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG--CYPDIVTYNTMLTALCKDGKVEDAVE 435

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           IL+++ + GC+P  +T +T+I G    G   +A +L+D++ A         YSSLV  L 
Sbjct: 436 ILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLS 495

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           R  ++ EA K F +    G++P+ +  + ++  LC   Q 
Sbjct: 496 REGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQT 535



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 155/307 (50%), Gaps = 13/307 (4%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAAD---ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           PD I    +IR FC  G    A    E+++G G +   PD+ITY  MI G+C AG + +A
Sbjct: 135 PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAV---PDVITYNVMISGYCKAGEINNA 191

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
                V+ R   + ++V Y+ +L  +C  G +++A+E+L  M +   DC P+V+TYT +I
Sbjct: 192 ---LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR--DCYPDVITYTILI 246

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
           +  C    +  A+ +LD M   GC P+ VT + L+ G C EG LDEA + ++ + + G  
Sbjct: 247 EATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQ 306

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   ++ ++  +  T R  +AEKL + ML  G  P  +  +++I  LC  G +     +
Sbjct: 307 PNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDI 366

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
            E + + G     +S  ++ LL G C++     A +    M+ +  +      + ++  L
Sbjct: 367 LEKMPQHG--CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424

Query: 459 KKSGDEE 465
            K G  E
Sbjct: 425 CKDGKVE 431



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 139/259 (53%), Gaps = 7/259 (2%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           NN +R     G++    + ++ M      PDII   ++I+GFC  G+   A  + ++++ 
Sbjct: 106 NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   +++ Y+ ++ G C+ G +  AL +L  M       SP+VVTY ++++  C  G +
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRMS-----VSPDVVTYNTILRSLCDSGKL 220

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           K+A+ +LDRM    C P+ +T + LI+  C +  +  A +L+D++   G       Y+ L
Sbjct: 221 KQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVL 280

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           V  + +  RL EA K  + M +SG +P+ +  ++++R +C  G+ ++   L  D+ + GF
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340

Query: 408 LSSVDSDIHSVLLLGLCRK 426
             SV +   ++L+  LCRK
Sbjct: 341 SPSVVT--FNILINFLCRK 357



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 131/251 (52%), Gaps = 4/251 (1%)

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +G   SV    ++ N LC K  L   A+ +L KMP+   +P+++ YN ++  FC++  M 
Sbjct: 338 KGFSPSVVTFNILINFLCRKGLLG-RAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMD 396

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A E ++ M     YPDI+TY +M+   C  G++EDA  +   +   GC+  L+ Y+ ++
Sbjct: 397 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG+ + G   +A++LL EM  +  D  P+ +TY+S++     +G + EA+      E +G
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAK--DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN VT ++++ G C     D A   +  ++  G   +   Y+ L+  L      KEA 
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEAL 574

Query: 362 KLFSKMLASGV 372
           +L +++   G+
Sbjct: 575 ELLNELCNKGL 585


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 143/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V  ++ ++ LRP  + +N ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   ++ DA  LF  M  +G   N V ++ L+DG C+ GS++ A+E   EM ++G   
Sbjct: 215 GLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQG--F 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A  
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALY 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L R  +  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G +  V
Sbjct: 393 KKGDVKTGSKLLKEMQRDGHVPCV 416



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 127/269 (47%), Gaps = 5/269 (1%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+++ L++G  RLG ++   
Sbjct: 132 YPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGF 191

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M +A  +   M   G  PN VT +TLI 
Sbjct: 192 RLKSAMHASG--VQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLID 249

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G++D A +   +++  G       Y++L+  L +   LK+A+ L  +M   G+KP
Sbjct: 250 GHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKP 309

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  + +I   C  G +     LY     I     +D   ++ L+ GLCR+  SV+A K
Sbjct: 310 DKITYTTLIDGSCKEGDLETA--LYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEK 367

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           + R ML   +         I+    K GD
Sbjct: 368 MLREMLSVGLKPDNGTYTMIINEFCKKGD 396



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 83/161 (51%), Gaps = 2/161 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM   ++M      PD I YN +I   C+KGD+  A +L+  M +  L PD ITY ++I 
Sbjct: 260 AMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G LE A    K M +     + VAY+AL+ G+CR G    A ++L EM   G   
Sbjct: 320 GSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVG--L 377

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            P+  TYT +I  FC KG +K    +L  M+  G  P  VT
Sbjct: 378 KPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVPCVVT 418



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 4/221 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A    G    V    V+ N LC+++++ N+A  +  +M    L P+ + +  +I   C+ 
Sbjct: 196 AMHASGVQPDVYTYSVLINGLCKESKM-NDANELFGEMIGNGLVPNGVTFTTLIDGHCKT 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E  K M      PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 GSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E AL     M KE  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGSCKEGDLETALYYRKRMIKE--NIRLDDVAYTALISGLCREGQSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
            ++G  P+  T + +I  FC +G++    +L+ ++   G V
Sbjct: 373 LSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHV 413



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 116/240 (48%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+  +  +I  +  +G L DA   F++ + H           +L+   +L    +  +L+
Sbjct: 65  DVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               KE  +C    ++  +  ++  FC +G M+ A  + D +   G  P+ V+ +TL+ G
Sbjct: 121 WGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   + A G       YS L+  L +  ++ +A +LF +M+ +G+ P+
Sbjct: 181 YIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G +      Y+++ + GF  S D   ++ L+ GLC+K    +A  L
Sbjct: 241 GVTFTTLIDGHCKTGSIDLAMETYKEMLRQGF--SPDLITYNTLIYGLCKKGDLKQAQDL 298


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 162/317 (51%), Gaps = 8/317 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC+  R+ ++A+  + +M    ++PD  IYN V+   C++  +  A  L + M   
Sbjct: 15  IVERLCKTKRI-DDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQ 73

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+++TY ++I G C A R+E A  LFK M   G     V+Y+ L+DG C+   +  A
Sbjct: 74  RINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAA 133

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++  +M +   +C PNVVTYT++I      G ++ A  +LD M   G  PN  T S LI
Sbjct: 134 KDVFDKMVR--SNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLI 191

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC    +DEA++L++++V  G   +   Y+ L+  L R  +L++A KLF  M      
Sbjct: 192 DGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCH 251

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P  +  + ++R LC   Q+     LY ++   G     D+  +  L  GL R     EA 
Sbjct: 252 PTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKG--CPPDAITYDTLAWGLTRAGKVHEAQ 309

Query: 434 KLARFMLKKRIWLQGPY 450
           +L   M K ++  + P+
Sbjct: 310 EL---MEKMKLTKRNPF 323



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 137/281 (48%), Gaps = 4/281 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + Y  ++   C+   +  A   ++ M    + PD   Y  ++ G C   ++E+A  L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F+ M +     N+V Y+ L++G+C+   +E A EL  EM  +G    P  V+Y ++I  F
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKG--YVPTEVSYNTLIDGF 124

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C K  +  A  + D+M    C PN VT +TLI G    G +  A +++D +V  G   + 
Sbjct: 125 CKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNV 184

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             YS L+    + +R+ EA KL  +M+  G+ P  +  ++++  LC   ++ + F L+  
Sbjct: 185 ATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRG 244

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           + +     +V +  ++ LL  LC       A +L   M+ K
Sbjct: 245 MAQRRCHPTVVT--YNTLLRALCHHKQLDGAHRLYAEMIAK 283



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 125/243 (51%), Gaps = 3/243 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R+   A  + ++M      P  + YN +I  FC+K D++AA ++   M   
Sbjct: 85  LINGLCKAWRIET-AYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRS 143

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +  P+++TY ++I G   +G+++ A  +   M + G   N+  YS L+DG C++  ++ A
Sbjct: 144 NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEA 203

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +LL +M  +G   +P VVTY  ++   C    +++A  +   M    C P  VT +TL+
Sbjct: 204 HKLLEQMVTQG--IAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLL 261

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           +  C    LD A++L  +++A G       Y +L   L R  ++ EA++L  KM  +   
Sbjct: 262 RALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRN 321

Query: 374 PDG 376
           P G
Sbjct: 322 PFG 324



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 2/184 (1%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           DV +      CV +V     + +   K+     A  VL  M +  + P+   Y+ +I  F
Sbjct: 135 DVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 194

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+   +  A +L++ M    + P ++TY  ++   C A +LEDA  LF+ M +  C   +
Sbjct: 195 CKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTV 254

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V Y+ LL  +C    ++ A  L  EM  +G  C P+ +TY ++       G + EA  ++
Sbjct: 255 VTYNTLLRALCHHKQLDGAHRLYAEMIAKG--CPPDAITYDTLAWGLTRAGKVHEAQELM 312

Query: 295 DRME 298
           ++M+
Sbjct: 313 EKMK 316


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 147/282 (52%), Gaps = 3/282 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P    YN +I   C++GD+ AA  L + M    L PD +TY SMI GF   GRL+D   
Sbjct: 92  KPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVC 151

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F+ MK   C  +++ Y+AL++  C+ G + + LE   EM++ G    PNVV+Y++++  
Sbjct: 152 FFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNG--LKPNVVSYSTLVDA 209

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +GMM++A+     M  +G  PN  T ++LI  +C  GNL +A++L ++++  G   +
Sbjct: 210 FCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWN 269

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+  L   +   E   L  +M+   +K   +   V+I  LC    V +    + 
Sbjct: 270 VVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFG 329

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            I    F    ++ I++ ++ GLC+ N    A  L   M +K
Sbjct: 330 RISN-DFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQK 370



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 143/301 (47%), Gaps = 4/301 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CV    +   +F++     +  EA+    KM  F + P T   N ++  F + G      
Sbjct: 21  CVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVK 80

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
              K M      P + TY  MI   C  G +E A GLF+ MK  G   + V Y++++DG 
Sbjct: 81  RFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGF 140

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            ++G ++  +    EM+     C P+V+TY ++I  FC  G + + L     M+  G  P
Sbjct: 141 GKVGRLDDTVCFFEEMKDMC--CEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKP 198

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N V+ STL+  FC EG + +A +    +   G V +   Y+SL+    +   L +A +L 
Sbjct: 199 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLA 258

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           ++ML  GV+ + +  + +I  LC      EG  L +++ ++    +V +    VL+ GLC
Sbjct: 259 NEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVT--FCVLIDGLC 316

Query: 425 R 425
           +
Sbjct: 317 K 317



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 142/327 (43%), Gaps = 44/327 (13%)

Query: 118 EAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           E  K+  C   V     + N  C+  +L  + +   R+M    L+P+ + Y+ ++  FC+
Sbjct: 154 EEMKDMCCEPDVITYNALINCFCKFGKLP-KGLEFFREMKRNGLKPNVVSYSTLVDAFCK 212

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
           +G M  A +    M  + L P+  TY S+I  +C  G L DA  L   M + G   N+V 
Sbjct: 213 EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVT 272

Query: 237 YSALLDGICRLGSMERALELLGEMEKEG-------------GDC---------------- 267
           Y+AL+DG+C   +    L LL EM +               G C                
Sbjct: 273 YTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRIS 332

Query: 268 -----SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
                  N   YT++I   C    ++ A  + ++M   G  P+R   ++L+ G   +GN+
Sbjct: 333 NDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNV 392

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC-SV 381
            EA  L DK+V  G       Y+SLV  L    +L++A     +M+  G+ PD + C SV
Sbjct: 393 LEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISV 452

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFL 408
           + +   LG       C+ E +E   +L
Sbjct: 453 LKKHYELG-------CINEAVELQSYL 472


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 163/296 (55%), Gaps = 4/296 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +AM +L +M +   +PD + YN +I   C++G +  A + +  M      P++IT+  ++
Sbjct: 261 QAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIIL 320

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +  C+ GR  DA  L   M R GC+ ++V ++ L++ +CR   + RA+++L +M K G  
Sbjct: 321 RSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG-- 378

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PN ++Y  ++  FC +  M  A+  L+ M + GC P+ VT +TL+   C +G +D A 
Sbjct: 379 CVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAV 438

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           ++++++ + G       Y++++  L +  + + A +L  +M   G+KPD +  S ++R L
Sbjct: 439 EILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGL 498

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              G+V E   ++ D+E +    S  +  ++ ++LGLC+   +  A     +M++K
Sbjct: 499 GREGKVDEAIKIFHDMEGLSIKPSAVT--YNAIMLGLCKAQQTSRAIDFLAYMVEK 552



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 146/278 (52%), Gaps = 4/278 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +++  +++GC   V    V+ N +C++ RL +EA+  L  MP +  +P+ I +N ++R  
Sbjct: 265 LLDEMRKKGCKPDVVTYNVLINGICKEGRL-DEAIKFLNNMPSYGCKPNVITHNIILRSM 323

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C  G  + A+ L+  M      P ++T+  +I   C    L  A  + + M +HGC  N 
Sbjct: 324 CSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNS 383

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           ++Y+ LL G C+   M+RA+E L  M   G  C P++VTY +++   C  G +  A+ IL
Sbjct: 384 LSYNPLLHGFCQEKKMDRAIEYLEIMVSRG--CYPDIVTYNTLLTALCKDGKVDAAVEIL 441

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           +++ + GC+P  +T +T+I G    G  + A +L++++   G       YS+L+  L R 
Sbjct: 442 NQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGRE 501

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            ++ EA K+F  M    +KP  +  + ++  LC   Q 
Sbjct: 502 GKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQT 539



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 149/282 (52%), Gaps = 9/282 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD I   ++IR FC  G    A  +M+ +      PD+ITY  +I G+C +G ++ A   
Sbjct: 139 PDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKA--- 195

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG-EMEKEGGDCSPNVVTYTSVIQI 280
            +V++R   A ++V Y+ +L  +C  G ++ A+E+L  ++++E   C P+V+TYT +I+ 
Sbjct: 196 LEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRE---CYPDVITYTILIEA 252

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C    + +A+ +LD M   GC P+ VT + LI G C EG LDEA + ++ + + G   +
Sbjct: 253 TCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPN 312

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ ++  +  T R  +AE+L S ML  G  P  +  +++I  LC    +     + E
Sbjct: 313 VITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLE 372

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            + K G +   +S  ++ LL G C++     A +    M+ +
Sbjct: 373 KMPKHGCVP--NSLSYNPLLHGFCQEKKMDRAIEYLEIMVSR 412



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 2/226 (0%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  SV    ++ N   + RL   A+ VL KMP+    P+++ YN ++  FC++  M  
Sbjct: 342 KGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDR 401

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E ++ M     YPDI+TY +++   C  G+++ A  +   +   GC+  L+ Y+ ++D
Sbjct: 402 AIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVID 461

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+ ++G  E A+ELL EM ++G    P+++TY+++++    +G + EA+ I   ME L  
Sbjct: 462 GLTKVGKTEYAVELLEEMRRKG--LKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSI 519

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            P+ VT + ++ G C       A   +  +V  G   +   Y+ L+
Sbjct: 520 KPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILI 565



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 116/230 (50%), Gaps = 7/230 (3%)

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G LE+     + M   G   +++A ++L+ G CR G  ++A  ++  +E  G    P+V+
Sbjct: 120 GELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGA--VPDVI 177

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TY  +I  +C  G + +AL +L+RM     AP+ VT +T+++  C  G L EA +++D+ 
Sbjct: 178 TYNVLIGGYCKSGEIDKALEVLERMSV---APDVVTYNTILRSLCDSGKLKEAMEVLDRQ 234

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +          Y+ L+        + +A KL  +M   G KPD +  +V+I  +C  G++
Sbjct: 235 LQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 294

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            E      ++   G   +V +  H+++L  +C     ++A +L   ML+K
Sbjct: 295 DEAIKFLNNMPSYGCKPNVIT--HNIILRSMCSTGRWMDAERLLSDMLRK 342



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 4/167 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I+ +E     GC   +     +   LC+  ++ + A+ +L ++      P  I YN VI 
Sbjct: 403 IEYLEIMVSRGCYPDIVTYNTLLTALCKDGKV-DAAVEILNQLSSKGCSPVLITYNTVID 461

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
              + G    A EL++ M    L PDIITY ++++G    G++++A  +F  M+      
Sbjct: 462 GLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKP 521

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           + V Y+A++ G+C+     RA++ L  M ++G  C P   TYT +I+
Sbjct: 522 SAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKG--CKPTEATYTILIE 566



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
           +LVR   L+E  K   +M+  G  PD +AC+ +IR  C  G+  +   + E +E  G + 
Sbjct: 115 KLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVP 174

Query: 410 SVDSDIHSVLLLGLCR 425
            V +  ++VL+ G C+
Sbjct: 175 DVIT--YNVLIGGYCK 188


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 141/274 (51%), Gaps = 4/274 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD   YN +I   C+KG +++A ELM  M +    P++ITY  +I  FC  GRLE+A  +
Sbjct: 12  PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 71

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M   G A N V Y+ L+  +C+   ++ AL + G+M  +G  C P++ T+ S+I   
Sbjct: 72  LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKG--CKPDIFTFNSLIFGL 129

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C     +EALG+   M   G   N +T +TLI  F   G + EA +L++ ++  G     
Sbjct: 130 CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDD 189

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y+ L+  L R   +++   LF  M++ G+ P+ ++C+++I  LC  G +        D
Sbjct: 190 ITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRD 249

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +   G    + +  ++ L+ GLC+   + EA  L
Sbjct: 250 MIHRGLTPDIVT--YNSLINGLCKTGRAQEALNL 281



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 135/269 (50%), Gaps = 4/269 (1%)

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC  +V    ++ +  C++ RL  EA  VL +M    L  + + YN +I   C+   + 
Sbjct: 43  KGCEPNVITYTILIDRFCKEGRLE-EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQ 101

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  +   M      PDI T+ S+I G C   + E+A GL++ M   G  AN + Y+ L+
Sbjct: 102 DALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLI 161

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
               R G+M+ AL+L+ +M   G  C  + +TY  +I+  C  G +++ L + + M + G
Sbjct: 162 HAFLRRGAMQEALKLVNDMLFRG--CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKG 219

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN ++ + LI G C  GN+  A + +  ++  G       Y+SL+  L +T R +EA 
Sbjct: 220 LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEAL 279

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGG 390
            LF K+   G+ PD +  + +I   C  G
Sbjct: 280 NLFDKLQVEGICPDAITYNTLISWHCKEG 308



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 138/274 (50%), Gaps = 4/274 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PDI TY ++I G C  G L  A  L   M+  GC  N++ Y+ L+D  C+ G +E A  +
Sbjct: 12  PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 71

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EM  +G   + N V Y  +I   C    +++AL +   M + GC P+  T ++LI G 
Sbjct: 72  LDEMSGKG--LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGL 129

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C     +EA  L   ++  G +++   Y++L+   +R   ++EA KL + ML  G   D 
Sbjct: 130 CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDD 189

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I+ LC  G + +G  L+ED+   G   + ++   ++L+ GLCR  +   A +  
Sbjct: 190 ITYNGLIKALCRAGNIEKGLALFEDMMSKGL--NPNNISCNILINGLCRTGNIQHALEFL 247

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           R M+ + +       + ++  L K+G  +   NL
Sbjct: 248 RDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNL 281



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +IF LC+  +   EA+ + + M    +  +TI YN +I  F  +G M  A +L+  M   
Sbjct: 125 LIFGLCKVNKFE-EALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFR 183

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               D ITY  +IK  C AG +E    LF+ M   G   N ++ + L++G+CR G+++ A
Sbjct: 184 GCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHA 243

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           LE L +M   G   +P++VTY S+I   C  G  +EAL + D+++  G  P+ +T +TLI
Sbjct: 244 LEFLRDMIHRG--LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 301

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              C EG  D+A+ L+ + V  G + +   +  LV   ++
Sbjct: 302 SWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIK 341



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 138/291 (47%), Gaps = 8/291 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVL 152
           + + +R C+  R+++      +V++    +G  + +V    +I  LC+  ++  +A+ + 
Sbjct: 53  TILIDRFCKEGRLEEAR----NVLDEMSGKGLALNAVGYNCLISALCKDEKV-QDALNMF 107

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
             M     +PD   +N++I   C+      A  L + M L  +  + ITY ++I  F   
Sbjct: 108 GDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRR 167

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G +++A  L   M   GC  + + Y+ L+  +CR G++E+ L L  +M  +G   +PN +
Sbjct: 168 GAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKG--LNPNNI 225

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           +   +I   C  G ++ AL  L  M   G  P+ VT ++LI G C  G   EA  L DK+
Sbjct: 226 SCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKL 285

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
              G       Y++L+    +     +A  L S+ + SG  P+ +   +++
Sbjct: 286 QVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILV 336



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 104/199 (52%), Gaps = 2/199 (1%)

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C P++ TY ++I   C KG +  A  +++ M+  GC PN +T + LI  FC EG L+EA 
Sbjct: 10  CGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEAR 69

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            ++D++   G   +   Y+ L+  L + +++++A  +F  M + G KPD    + +I  L
Sbjct: 70  NVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGL 129

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           C   +  E   LY+D+   G +++  +  ++ L+    R+    EA KL   ML +   L
Sbjct: 130 CKVNKFEEALGLYQDMLLEGVIANTIT--YNTLIHAFLRRGAMQEALKLVNDMLFRGCPL 187

Query: 447 QGPYVDKIVEHLKKSGDEE 465
                + +++ L ++G+ E
Sbjct: 188 DDITYNGLIKALCRAGNIE 206



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D I YN +I+  C  G++     L + M    L P+ I+   +I G C  G ++ A    
Sbjct: 188 DDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFL 247

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + M   G   ++V Y++L++G+C+ G  + AL L  +++ EG    P+ +TY ++I   C
Sbjct: 248 RDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG--ICPDAITYNTLISWHC 305

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            +GM  +A  +L R    G  PN VT   L+  F  EG+
Sbjct: 306 KEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 344



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           + M ++GC P+  T +TLI G C +G L  A +L++++   G   +   Y+ L+    + 
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            RL+EA  +  +M   G+  + +  + +I  LC   +V +   ++ D+   G     D  
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKG--CKPDIF 120

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFML 440
             + L+ GLC+ N   EA  L + ML
Sbjct: 121 TFNSLIFGLCKVNKFEEALGLYQDML 146



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 13/184 (7%)

Query: 80  FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK------ 133
           F    A+Q + +  + M  R C +  I  N  I         E+G  +   MM       
Sbjct: 164 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPN 223

Query: 134 ------VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
                 +I  LC    + + A+  LR M    L PD + YN++I   C+ G    A  L 
Sbjct: 224 NISCNILINGLCRTGNIQH-ALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 282

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             + +  + PD ITY ++I   C  G  +DA  L       G   N V +  L+    + 
Sbjct: 283 DKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKE 342

Query: 248 GSME 251
           G  E
Sbjct: 343 GDQE 346


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 170/333 (51%), Gaps = 14/333 (4%)

Query: 134 VIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V++N     LC +  L   A+ V+ +M E    PD   YN +I   C+ G++  A  +M 
Sbjct: 386 VVYNSLVKGLCRQG-LILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMN 444

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
              +    PD+ T+ ++I G+C   +L+ A  L + M  +G A +++ Y+++L+G+C+ G
Sbjct: 445 DAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAG 504

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
             +   E   EM  +G  C PN +TY  +I+ FC    ++EA G++ RM   G  P+ V+
Sbjct: 505 KAKEVNETFEEMILKG--CRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVS 562

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI GFC  G+LD AY L  K+   G  ++   ++ L+        ++ AEK+F +M+
Sbjct: 563 FNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMI 622

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           + G KPD     +++  LC    V   +    ++   GF+ S+ +    + LL +   NH
Sbjct: 623 SKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAM---NH 679

Query: 429 SV-EAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
            V EA  +   M+  R+ +    VD I+   KK
Sbjct: 680 RVSEAVAIIHIMV--RMGVVPEVVDTILSTDKK 710



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 170/335 (50%), Gaps = 10/335 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           CE  R+++  +++ + + AY     V    +M+    LC+ +++   A ++ R M +  +
Sbjct: 257 CEDGRLEEAVALV-ERMGAYVAPDVVTYNTLMR---GLCKDSKVQEAAQYLGRMMNQGCI 312

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   YN +I  +C+ G +  A EL+K        PD +TY S+I G C  G +E A  
Sbjct: 313 -PDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALE 371

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF   +      +LV Y++L+ G+CR G +  AL+++ EM +EG  C P++ TY  +I  
Sbjct: 372 LFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEG--CHPDIWTYNIIING 429

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G + +A  +++     G  P+  T +TLI G+C    LD A QL++++   G    
Sbjct: 430 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPD 489

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+S++  L +  + KE  + F +M+  G +P+ +  +++I   C   Q+ E   +  
Sbjct: 490 VITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIV 549

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            + + G +   D+   + L+ G CR N  ++ A L
Sbjct: 550 RMCQDGLVP--DAVSFNTLIHGFCR-NGDLDGAYL 581



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 143/287 (49%), Gaps = 7/287 (2%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +LR + E         Y  V+R     G    A  L   M   D++PD+ T+ +++ 
Sbjct: 160 ALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLH 219

Query: 208 GFCNAGR-LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
             C  G  +E    L KV+KR G +AN    +  + G+C  G +E A+ L+   E+ G  
Sbjct: 220 ALCQKGDVMESGALLAKVLKR-GMSANKFTCNIWIRGLCEDGRLEEAVALV---ERMGAY 275

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            +P+VVTY ++++  C    ++EA   L RM   GC P+  T +T+I G+C  G L EA 
Sbjct: 276 VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEAT 335

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+   V  G V     Y SL+  L     ++ A +LF++  A  +KPD +  + +++ L
Sbjct: 336 ELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGL 395

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           C  G +L    +  ++ + G     D   +++++ GLC+  +  +AA
Sbjct: 396 CRQGLILHALQVMNEMVEEG--CHPDIWTYNIIINGLCKMGNISDAA 440



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 127/280 (45%), Gaps = 11/280 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+    +M  F   P    YN ++           A ++   M    + PD  T+   +K
Sbjct: 90  AVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLK 149

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            FC  GR   A  L + +   GC A   AY  ++ G+   G    A  L  EM   G D 
Sbjct: 150 SFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEM--LGRDV 207

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+V T+ +V+   C KG + E+  +L ++   G + N+ T +  I+G C +G L+EA  
Sbjct: 208 FPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVA 267

Query: 328 LIDKV---VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           L++++   VA   V+    Y++L+  L +  +++EA +   +M+  G  PD    + +I 
Sbjct: 268 LVERMGAYVAPDVVT----YNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIID 323

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
             C  G + E   L +D    GF+   D   +  L+ GLC
Sbjct: 324 GYCKSGMLQEATELLKDAVFKGFVP--DRVTYCSLINGLC 361



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 131/288 (45%), Gaps = 10/288 (3%)

Query: 156 PEFDLRPDTI-IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT--YVSMIKGFCNA 212
           P  +L   TI  Y  +IR     G +   D  +       L PD +   YV+ I+ +  A
Sbjct: 26  PSSELTASTIPAYRALIRELVSAGRLDDVDAALAS-ARSHLAPDSLQPLYVASIQAYARA 84

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           GRL  A   F+ M    C     AY+A++D +      ++A ++   M   G   +P+  
Sbjct: 85  GRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAG--VAPDAR 142

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           T+T  ++ FC  G    AL +L  +   GC        T+++G    G+   A  L D++
Sbjct: 143 THTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEM 202

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +          +++++  L +   + E+  L +K+L  G+  +   C++ IR LC  G++
Sbjct: 203 LGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRL 262

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK-LARFM 439
            E   L   +E++G   + D   ++ L+ GLC+ +   EAA+ L R M
Sbjct: 263 EEAVAL---VERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMM 307


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 148/286 (51%), Gaps = 2/286 (0%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           ++ GCV  V+    + +   KA   +EA  +  +M E    PDT  YN++I    + G  
Sbjct: 106 RDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRS 165

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A EL++ M      PD++TY S+I G    G    A  LF+ MKR G   + + ++AL
Sbjct: 166 QKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTAL 225

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +D + + G ++ ALELL EM++ G    P VVTY ++I  F   G + EA  +LD M+  
Sbjct: 226 MDALGKAGRVDDALELLDEMKERG--VKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRN 283

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GC P+ VT S LI G      LDEA Q++ K+   G       Y++L+  L +   L +A
Sbjct: 284 GCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDA 343

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            +LF +M + G  PD +  S +I  L    +V     L+E++E +G
Sbjct: 344 GRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVG 389



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 178/350 (50%), Gaps = 4/350 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++++E  +  GC   V     +     K     +A  + ++M     +PD+I +  ++  
Sbjct: 169 MELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDA 228

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             + G +  A EL+  M    + P ++TY ++I GF   G L +A  L   MKR+GC  +
Sbjct: 229 LGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPD 288

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V YS L+ G+ +   ++ A ++L +MEKEG  C P+ +TY ++I      G++ +A  +
Sbjct: 289 VVTYSCLITGLIKASQLDEACQVLKKMEKEG--CPPDTITYNTLINGLGKAGLLNDAGRL 346

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
            DRM++ GC P+ VT STLI        ++ A  L +++ + G       Y S++  L +
Sbjct: 347 FDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGK 406

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             ++ +A++LFS+M   G+ PD +  +  +  L  GG+  E   ++ED+++ G L  V +
Sbjct: 407 AGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVAT 466

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             +  LLLGL +     +A  L + ++++         D+ +E L   G+
Sbjct: 467 --YDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGN 514



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 160/320 (50%), Gaps = 5/320 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++VV   + +GC  ++     + +   KA   +EA+ +L +M +    PD   YN +I  
Sbjct: 64  LEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIST 123

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             + G +  A  L   M      PD  TY S+I G    GR + A  L + M+RHGC  +
Sbjct: 124 LGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPD 183

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           ++ YS+L+ G+ + G   +A +L  EM++ G    P+ +T+T+++      G + +AL +
Sbjct: 184 VMTYSSLITGLGKDGETVKAFKLFQEMKRRGR--KPDSITFTALMDALGKAGRVDDALEL 241

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           LD M+  G  P  VT + LI GF   G+L EAY L+D++   G       YS L+  L++
Sbjct: 242 LDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIK 301

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             +L EA ++  KM   G  PD +  + +I  L   G + +   L++ ++  G   + D 
Sbjct: 302 ASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKG--CNPDV 359

Query: 414 DIHSVLLLGLCRKNHSVEAA 433
             +S L+  L  K   VE+A
Sbjct: 360 VTYSTLITAL-GKAARVESA 378



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 145/334 (43%), Gaps = 43/334 (12%)

Query: 115 DVVEAY------KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           D+VEAY      K  GC   V     +     KA   +EA  VL+KM +    PDTI YN
Sbjct: 269 DLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYN 328

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I    + G +  A  L   M      PD++TY ++I     A R+E AC LF+ M+  
Sbjct: 329 TLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESV 388

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   +L  Y +++  + + G ++ A  L  EM  +G   SP+V+TY + +      G  K
Sbjct: 389 GIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKG--LSPDVITYNAFLNSLGRGGRFK 446

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGF------------------------------CV 318
           EA  I + M+  G  P+  T   L+ G                               C+
Sbjct: 447 EARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECL 506

Query: 319 E-----GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           E     GN+DEA++L+    + G       Y++L+  L +  R+ EA      +   G K
Sbjct: 507 EILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGK 566

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           PD ++ S +I  L   GQ+   F L E++ K G 
Sbjct: 567 PDIVSYSSLISALGQTGQIDTAFELLEEMSKRGL 600



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 144/295 (48%), Gaps = 4/295 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ V+ +M     +P+   YN ++    + G    A  L+  M      PD+ TY  +I 
Sbjct: 63  ALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIS 122

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
               AGRL +A  LF  M+  GC  +   Y++L+ G+ ++G  ++A+ELL EME+ G  C
Sbjct: 123 TLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHG--C 180

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+V+TY+S+I      G   +A  +   M+  G  P+ +T + L+      G +D+A +
Sbjct: 181 PPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALE 240

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+D++   G       Y++L+    +   L EA  L  +M  +G KPD +  S +I  L 
Sbjct: 241 LLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLI 300

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              Q+ E   + + +EK G     D+  ++ L+ GL +     +A +L   M  K
Sbjct: 301 KASQLDEACQVLKKMEKEG--CPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSK 353



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 130/274 (47%), Gaps = 4/274 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+ + YN+++    + G    A  L + +      PD+++Y  +I     AG+ E A  +
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M+  GC  NL  Y+ L+D + + G  + AL LL EM   G  C P+V TY  +I   
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNG--CVPDVRTYNCLISTL 124

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
              G + EA  +   M   GC P+  T ++LI G    G   +A +L++++   G     
Sbjct: 125 GKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDV 184

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             YSSL+  L +     +A KLF +M   G KPD +  + ++  L   G+V +   L ++
Sbjct: 185 MTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDE 244

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +++ G    V +  ++ L+ G  +    VEA  L
Sbjct: 245 MKERGVKPGVVT--YNALIAGFGKVGDLVEAYNL 276



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 157/328 (47%), Gaps = 4/328 (1%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           + N   KA    EA  +  ++      PD + Y+ +I      G   AA E++  M    
Sbjct: 15  LLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKG 74

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             P++ TY +++     AG+ ++A  L   M+ +GC  ++  Y+ L+  + + G +  A 
Sbjct: 75  CKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAF 134

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L  EM + G  C P+  TY S+I      G  ++A+ +L+ ME  GC P+ +T S+LI 
Sbjct: 135 TLFAEMRERG--CVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLIT 192

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G   +G   +A++L  ++   G       +++L+  L +  R+ +A +L  +M   GVKP
Sbjct: 193 GLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKP 252

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
             +  + +I      G ++E + L +++++ G     D   +S L+ GL + +   EA +
Sbjct: 253 GVVTYNALIAGFGKVGDLVEAYNLLDEMKRNG--CKPDVVTYSCLITGLIKASQLDEACQ 310

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           + + M K+         + ++  L K+G
Sbjct: 311 VLKKMEKEGCPPDTITYNTLINGLGKAG 338



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 123/277 (44%), Gaps = 13/277 (4%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-----SVKMMKVIFNLCE 140
           L  + R    M ++ C    +  +  I      A  E  CV+     SV +   +F  C 
Sbjct: 340 LNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCS 399

Query: 141 ------KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
                 KA   ++A  +  +M    L PD I YN  +      G    A ++ + M    
Sbjct: 400 IITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESG 459

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           L PD+ TY +++ G      ++DACGL K +   GCA + + +   L+ +   G+++ A 
Sbjct: 460 LLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAH 519

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           ELL     +G    P   +Y ++I      G + EA   L+ ++  G  P+ V+ S+LI 
Sbjct: 520 ELLQFANSKG--LWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLIS 577

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
                G +D A++L++++   G   S   YS+LV +L
Sbjct: 578 ALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKL 614



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 108/212 (50%), Gaps = 4/212 (1%)

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
           + N+V Y++LL+ + + G  E A  L  E++      +P+VV+Y+ +I      G  + A
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELK--AAKWTPDVVSYSCLINSLGRAGKWEAA 63

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           L ++  M+A GC PN  T +TL+      G  DEA +L+ ++   G V     Y+ L+  
Sbjct: 64  LEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIST 123

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L +  RL EA  LF++M   G  PD    + +I  L   G+  +   L E++E+ G    
Sbjct: 124 LGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHG--CP 181

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            D   +S L+ GL +   +V+A KL + M ++
Sbjct: 182 PDVMTYSSLITGLGKDGETVKAFKLFQEMKRR 213


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 185/372 (49%), Gaps = 26/372 (6%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEG-CVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           + N  C+  R+++    +++V     EEG     V    ++   C    + N+A+ ++  
Sbjct: 234 LVNGFCKEGRVEEALRFVLEV----SEEGFSPDQVTFNSLVNGFCRIGNV-NDALDIVDF 288

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E    PD   YN++I   C+ G+   A E+++ M L +  P+ +TY ++I   C    
Sbjct: 289 MIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENE 348

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +E A  L +++   G   ++  ++ L+ G+C   + + A+E+  EM+ +G  C P+  TY
Sbjct: 349 IEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKG--CKPDEFTY 406

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + +I   C +  +KEAL +L  ME+ GCA N V  +TLI G C    +++A ++ D++  
Sbjct: 407 SILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMEL 466

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G   S   Y++L+  L + KR++EA +L  +M+  G+KPD    +           +L 
Sbjct: 467 LGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYN----------SLLT 516

Query: 395 GFCLYEDIEKIGFL------SSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
            FC   DIEK G +      +  + DI  +  L+ GLCR      A+KL R +  K I L
Sbjct: 517 YFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVL 576

Query: 447 QGPYVDKIVEHL 458
                + +++ L
Sbjct: 577 TPHAYNPVIQAL 588



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 170/316 (53%), Gaps = 13/316 (4%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           EG V+ V    V+     KA     A+ +L +M    L+PD I +  +++ F E+GD+  
Sbjct: 152 EGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNG 211

Query: 183 ADELMKGM-GLIDLYPDIITYVS---MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
           A ++ K M G    Y  ++T VS   ++ GFC  GR+E+A      +   G + + V ++
Sbjct: 212 ALKMKKQMLG----YGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFN 267

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           +L++G CR+G++  AL+++  M ++G D  P+V TY S+I   C  G  ++A+ IL +M 
Sbjct: 268 SLVNGFCRIGNVNDALDIVDFMIEKGFD--PDVYTYNSLISGMCKLGEFEKAIEILQQMI 325

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
              C+PN VT +TLI   C E  ++ A  L   +V+ G +     +++L+  L  +K   
Sbjct: 326 LRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQD 385

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
            A ++F +M   G KPD    S++I  LC   ++ E   L +++E  G   + ++ +++ 
Sbjct: 386 IAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSG--CARNAVVYNT 443

Query: 419 LLLGLCRKNHSVEAAK 434
           L+ GLC K+  +E A+
Sbjct: 444 LIDGLC-KSRRIEDAE 458



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 125/243 (51%), Gaps = 2/243 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM +  +M     +PD   Y+ +I   C +  +  A  L+K M       + + Y ++I 
Sbjct: 387 AMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLID 446

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C + R+EDA  +F  M+  G + + V Y+ L+DG+C+   +E A +L+ +M  EG   
Sbjct: 447 GLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEG--L 504

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+  TY S++  FC  G +++A  I+  M + GC P+  T  TLI G C  G +D A +
Sbjct: 505 KPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASK 564

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+  V   G V +   Y+ ++  L   KR KE  +LF +M+     PD L   ++ R LC
Sbjct: 565 LLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLC 624

Query: 388 LGG 390
            GG
Sbjct: 625 NGG 627



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 141/277 (50%), Gaps = 4/277 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D   +N +I+  C+   +  A  +++ M    L PD IT+ ++++GF   G L  A  + 
Sbjct: 157 DVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMK 216

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           K M  +GC    V+   L++G C+ G +E AL  + E+ +EG   SP+ VT+ S++  FC
Sbjct: 217 KQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEG--FSPDQVTFNSLVNGFC 274

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G + +AL I+D M   G  P+  T ++LI G C  G  ++A +++ +++      +  
Sbjct: 275 RIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTV 334

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y++L+  L +   ++ A  L   +++ G+ PD    + +I+ LCL         ++E++
Sbjct: 335 TYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEM 394

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +  G     D   +S+L+  LC +    EA  L + M
Sbjct: 395 KNKG--CKPDEFTYSILIDSLCYERRLKEALMLLKEM 429



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 113/246 (45%), Gaps = 4/246 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD   Y   +       +L+    L   M   G   ++  ++ L+  +C+   +  A+ +
Sbjct: 121 PDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILM 180

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EM   G    P+ +T+T+++Q F  +G +  AL +  +M   GC    V++  L+ GF
Sbjct: 181 LEEMANHG--LKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGF 238

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C EG ++EA + + +V   G       ++SLV    R   + +A  +   M+  G  PD 
Sbjct: 239 CKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDV 298

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
              + +I  +C  G+  +   + + +  I    S ++  ++ L+  LC++N    A  LA
Sbjct: 299 YTYNSLISGMCKLGEFEKAIEILQQM--ILRECSPNTVTYNTLISALCKENEIEAATDLA 356

Query: 437 RFMLKK 442
           R ++ K
Sbjct: 357 RILVSK 362



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 6/234 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           SV    +I  LC+  R+  EA  ++ +M    L+PD   YN+++  FC  GD+  A +++
Sbjct: 473 SVTYNTLIDGLCKNKRV-EEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIV 531

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M      PDI TY ++I G C AGR++ A  L + ++  G      AY+ ++  +   
Sbjct: 532 QTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMR 591

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC-GKGMMKEALGILDRMEALGCAPNR 306
              +  + L  EM ++     P+ +T+  V +  C G G ++EA+     M   G  P  
Sbjct: 592 KRTKEGMRLFREMMEKSD--PPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEF 649

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
            +   L +G C     D   +LI+ V+    +S     +S++   ++ ++  +A
Sbjct: 650 PSFGFLAEGLCSLSMEDTLIELINMVMEKAQMSER--ETSMIRGFLKIRKFNDA 701



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 4/170 (2%)

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L ++++ G  PN  T +TLI+ F     ++   ++++  +  G       Y+  +  LV
Sbjct: 77  LLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILENEL--GFKPDTNFYNIALNALV 134

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              +LK  E L SKM+  G+  D    +V+I+ LC   Q+     + E++   G     D
Sbjct: 135 EDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGL--KPD 192

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
               + L+ G   +     A K+ + ML     L    V  +V    K G
Sbjct: 193 EITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEG 242


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 166/341 (48%), Gaps = 39/341 (11%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ R+ +EA+ +L +M      P  +IYN +I   C+KGD+    +L+  M L   +P
Sbjct: 232 LCKEERI-DEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFP 290

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---------- 247
           + +TY ++I G C  G+L+ A  L + M    C  N V Y  L++G+ +           
Sbjct: 291 NEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLL 350

Query: 248 -------------------------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
                                    G  E A+ L  +M ++G  C PN+V Y++VI   C
Sbjct: 351 ISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKG--CRPNIVVYSAVIDGLC 408

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            +G   EA  IL+ M + GC PN  T S+L+KGF   G  +EA Q+  ++   G   +  
Sbjct: 409 REGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEF 468

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           CYS L+  L    R+KEA  ++SKML  G+KPD +A S MI+ LC  G +     LY ++
Sbjct: 469 CYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEM 528

Query: 403 E-KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             +    S  D   +++LL GLC +     A  L   ML +
Sbjct: 529 LCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDR 569



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 165/335 (49%), Gaps = 9/335 (2%)

Query: 110 PSIIIDVVEAYKEE-GCVVSVKMMKVIFNLCEKARLANEAM----WVLRKMPEFDLRPDT 164
           P   +D+     +E  C  SVK    + N+     L +  +    +V+      ++ P+ 
Sbjct: 128 PEKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNG 187

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + +N VI+  C+ G +  A E+ +GM      PD  TY +++ G C   R+++A  L   
Sbjct: 188 LSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDE 247

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+  GC+ + V Y+ L+DG+C+ G + R  +L+  M  +G  C PN VTY ++I   C K
Sbjct: 248 MQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKG--CFPNEVTYNTLIHGLCLK 305

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + +A+ +L+RM +  C PN VT  TLI G   +    +  +L+  +   G   +   Y
Sbjct: 306 GKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIY 365

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           S L+  L +  + +EA  L+ KM   G +P+ +  S +I  LC  G+  E   +   +  
Sbjct: 366 SVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMIS 425

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            G L +V +  +S L+ G  +   S EA ++ R M
Sbjct: 426 SGCLPNVYT--YSSLMKGFFKTGLSEEAIQVWREM 458



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 129/280 (46%), Gaps = 52/280 (18%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           A EAM + +KM E   RP+ ++Y+ VI   C +G    A E++ GM      P++ TY S
Sbjct: 378 AEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSS 437

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAAN------------------------------- 233
           ++KGF   G  E+A  +++ M   GC+ N                               
Sbjct: 438 LMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIG 497

Query: 234 ----LVAYSALLDGICRLGSMERALELLGEME-KEGGDCSPNVVTYTSVIQIFCGKGMMK 288
                VAYS+++ G+C +GSM+ AL+L  EM  +E     P+VVTY  ++   C +  + 
Sbjct: 498 IKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVS 557

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSL 347
            A+ +L+ M   GC P+ +T +T +     + +  +E    ++++VA             
Sbjct: 558 RAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEELVA------------- 604

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              L++ +R+  A K+   ML   + P     ++++ E+C
Sbjct: 605 --RLLKRQRVSGACKIVEVMLGKYLAPKTSTWAMIVPEIC 642


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 186/368 (50%), Gaps = 14/368 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVV-EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           + N  C+  RI Q  S I + V E ++ +    +     ++  LC K   A  AM V+  
Sbjct: 279 LINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNT----LVNGLC-KIGHAKHAMEVVDA 333

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M    L PD   YN++I   C+ G++  A +++  M   D  P+ +TY ++I   C   R
Sbjct: 334 MLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENR 393

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +++A  + +++   G   ++  +++L+ G+C   + + A++L  EM+ +G  C P+  TY
Sbjct: 394 VDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKG--CRPDEFTY 451

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +I   C    ++EAL +L  ME  GCA N V  +TLI GFC    ++EA ++ D++  
Sbjct: 452 NMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMEL 511

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y++L+  L ++KR+++A +L  +M+  G++PD    + ++   C  G + +
Sbjct: 512 QGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKK 571

Query: 395 GFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452
                 DI +    S  + DI  ++ L+ GLC+      A++L R +  K + L     +
Sbjct: 572 A----ADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYN 627

Query: 453 KIVEHLKK 460
            +++ L K
Sbjct: 628 PVIQALFK 635



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 127/243 (52%), Gaps = 2/243 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM +  +M     RPD   YN +I   C    +  A  L+K M L     +++ Y ++I 
Sbjct: 432 AMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLID 491

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC   R+E+A  +F  M+  G + + V Y+ L+DG+C+   +E A +L+ +M  EG   
Sbjct: 492 GFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEG--L 549

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+  TY S++  FC  G +K+A  I+  M + GC P+ VT +TLI G C  G +  A +
Sbjct: 550 RPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASR 609

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+  +   G V +   Y+ ++  L +  R  EA +LF +ML     PD +   ++ R LC
Sbjct: 610 LLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLC 669

Query: 388 LGG 390
            GG
Sbjct: 670 NGG 672



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 171/361 (47%), Gaps = 40/361 (11%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC KA     A+ ++ +MP + L PD   +  +++ + E G++  A  + + M       
Sbjct: 213 LC-KAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPC 271

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
             +T   +I GFC  GR++ A    +     G   +   Y+ L++G+C++G  + A+E++
Sbjct: 272 TDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVV 331

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M   G D  P++ TY S+I   C  G ++EA+ ILD+M +  C+PN VT + +I   C
Sbjct: 332 DAMLLGGLD--PDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLC 389

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            E  +DEA ++   + + G +     ++SL+  L  +   K A  LF +M   G +PD  
Sbjct: 390 KENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEF 449

Query: 378 ACSVMIRELC----------------LGG---------QVLEGFC----------LYEDI 402
             +++I  LC                L G          +++GFC          +++++
Sbjct: 450 TYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEM 509

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           E  G   S DS  ++ L+ GLC+     +AA+L   M+ + +       + ++ H  K+G
Sbjct: 510 ELQGV--SRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTG 567

Query: 463 D 463
           D
Sbjct: 568 D 568



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 168/384 (43%), Gaps = 42/384 (10%)

Query: 62  VIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYK 121
           +IE L R   +     +R F WA+ Q ++  SS +Y           +   +  V+E  K
Sbjct: 67  LIETLRR--QTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMK 124

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP-EFDLRPDTIIYNNVIRLFCEKGDM 180
             GC     +  +      K  L +E + +++ M  E+ ++PDT  YN ++ +       
Sbjct: 125 LSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNV------- 177

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
                      L+D                 A +L+        M R     ++  ++ L
Sbjct: 178 -----------LVD-----------------ANKLKLVESAHSSMVRRRIRHDVSTFNIL 209

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +  +C+   +  A+ ++ EM   G   SP+  T+T+++Q +   G +  AL I ++M   
Sbjct: 210 IKALCKAHQVRPAILMMEEMPSYG--LSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEY 267

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GC    VT++ LI GFC +G +D+A   I + V+ G       Y++LV  L +    K A
Sbjct: 268 GCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHA 327

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            ++   ML  G+ PD    + +I  LC  G++ E   + + +  +    S ++  ++ ++
Sbjct: 328 MEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQM--VSRDCSPNAVTYNAII 385

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
             LC++N   EA ++AR +  K I
Sbjct: 386 SSLCKENRVDEATEIARLLTSKGI 409



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 124/265 (46%), Gaps = 16/265 (6%)

Query: 91  RHSSFMYN----RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLA 145
           R   F YN      C   ++++     +++++  +  GC  +V +   + +  C+  R+ 
Sbjct: 445 RPDEFTYNMLIDSLCSSRKLEE----ALNLLKEMELNGCARNVVIYNTLIDGFCKNKRI- 499

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            EA  +  +M    +  D++ YN +I   C+   +  A +LM  M +  L PD  TY S+
Sbjct: 500 EEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSL 559

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +  FC  G ++ A  + + M   GC  ++V Y+ L+ G+C+ G ++ A  LL  ++ +G 
Sbjct: 560 LTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGM 619

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN-LDE 324
             +P+   Y  VIQ    +    EA+ +   M      P+ +T   + +G C  G  + E
Sbjct: 620 VLTPHA--YNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGE 677

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVV 349
           A     +++  G++     +SS V+
Sbjct: 678 AVDFTVEMIERGNIPE---FSSFVM 699


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 159/307 (51%), Gaps = 7/307 (2%)

Query: 122 EEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E G VV    + +I    CEK      A+W  R+  E  LRP+ I +  +I   C++G +
Sbjct: 230 ERGFVVDNATLSLIVREFCEKG-FVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSV 288

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSA 239
             A E+++ M      P++ T+ ++I G C  G  E A  LF K+++      N++ Y+A
Sbjct: 289 KQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTA 348

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           ++ G CR   M RA  LL  M+++G   +PN  TYT++I   C  G  + A  +++ M  
Sbjct: 349 MISGYCRDEKMNRAEMLLSRMKEQG--LAPNTNTYTTLIDGHCKAGNFERAYELMNVMNE 406

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G +PN  T + ++ G C +G + EAY+++      G  +    Y+ L+ E  +   +K+
Sbjct: 407 EGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQ 466

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A  LF+KM+ SG++PD  + + +I   C   ++ E    +E+  + G + +  +  ++ +
Sbjct: 467 ALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPT--NKTYTSM 524

Query: 420 LLGLCRK 426
           + G CR+
Sbjct: 525 ICGYCRE 531



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 202/458 (44%), Gaps = 84/458 (18%)

Query: 38  HLQKNPNNIEKTLA-TVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFM 96
           HL  +PN++    A T+ A L S            + S + + FF WA   S +RH + +
Sbjct: 66  HLDVDPNSLTHDQAVTIVASLAS-----------DAGSMVALSFFNWAIASSKFRHFTRL 114

Query: 97  YNRAC-------------------------EMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           Y  AC                         E+ R+K+   ++I++      +G   S K 
Sbjct: 115 Y-IACAASLISNKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEM----HNQGLAPSTKT 169

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM- 190
           +  +  +  +  L   A  +  +M    ++P+ + Y  ++  +C+ G+++ +D  + GM 
Sbjct: 170 LNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMI 229

Query: 191 ---------------------GLID-------------LYPDIITYVSMIKGFCNAGRLE 216
                                G +              L P++I +  MI+G C  G ++
Sbjct: 230 ERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVK 289

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            A  + + M   G   N+  ++AL+DG+C+ G  E+A  L  ++ +      PNV+TYT+
Sbjct: 290 QAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENH-KPNVLTYTA 348

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I  +C    M  A  +L RM+  G APN  T +TLI G C  GN + AY+L++ +   G
Sbjct: 349 MISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEG 408

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
              +   Y+++V  L +  R++EA K+      +G+  D +  +++I E C   ++ +  
Sbjct: 409 FSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQAL 468

Query: 397 CLYEDIEKIGFLSSVDSDIHS--VLLLGLCRKNHSVEA 432
            L+  + K G    +  DIHS   L+   CR+    E+
Sbjct: 469 VLFNKMVKSG----IQPDIHSYTTLIAVFCREKRMKES 502



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 157/324 (48%), Gaps = 6/324 (1%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
           Y H++ + +  C+    ++   + + +V +   +  V++   M  I   C   ++ N A 
Sbjct: 308 YTHTALI-DGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAM--ISGYCRDEKM-NRAE 363

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            +L +M E  L P+T  Y  +I   C+ G+   A ELM  M      P++ TY +++ G 
Sbjct: 364 MLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGL 423

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C  GR+++A  + K   R+G  A+ V Y+ L+   C+   +++AL L  +M K G    P
Sbjct: 424 CKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSG--IQP 481

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           ++ +YT++I +FC +  MKE+    +     G  P   T +++I G+C EGNL  A +  
Sbjct: 482 DIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFF 541

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            ++   G  S    Y +L+  L +  +L EA  L+  M+  G+ P  +    +  E C  
Sbjct: 542 HRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKI 601

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDS 413
                   + E +EK  ++ +V++
Sbjct: 602 DDGCSAMVVLERLEKKLWVRTVNT 625



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 21/252 (8%)

Query: 116 VVEAYK--EEGCVVSVKMMKVIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           V EAYK  + G    +   KV + +     C++A +  +A+ +  KM +  ++PD   Y 
Sbjct: 429 VQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEI-KQALVLFNKMVKSGIQPDIHSYT 487

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I +FC +  M  ++   +      L P   TY SMI G+C  G L  A   F  M  H
Sbjct: 488 TLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDH 547

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           GCA++ + Y AL+ G+C+   ++ A  L   M ++G   +P  VT  ++   +C      
Sbjct: 548 GCASDSITYGALISGLCKQSKLDEARCLYDAMIEKG--LTPCEVTRVTLAYEYCKIDDGC 605

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA----YQLIDKVVAGGSVSSG--- 341
            A+ +L+R+E         T++TL++  C E  +  A    ++L+DK      V+     
Sbjct: 606 SAMVVLERLEKKLWVR---TVNTLVRKLCSERKVGMAALFFHKLLDKDPNVNRVTIAAFM 662

Query: 342 -GCYSSLVVELV 352
             CY S   +LV
Sbjct: 663 TACYESNKYDLV 674


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 169/336 (50%), Gaps = 4/336 (1%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFDLRPDTII 166
           Q P +   VV    + G  V+V +M ++   LC    +  EAM ++R+M    + PD + 
Sbjct: 123 QKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVF-EAMGLIREMGRKSVSPDIVS 181

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +I   C+   +  A  L+  M     +P+ +T  +++ G C  GR+++A  L + MK
Sbjct: 182 YNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMK 241

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           + G  A++V Y  L+ G C  G+++R  EL  EM  +G   S NVVTY+ ++   C  G 
Sbjct: 242 KKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKG--ISANVVTYSCLVHGLCRLGQ 299

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
            KEA  +L+ M   G  P+ VT + LI G C +G    A  L++ +V  G   S   Y+ 
Sbjct: 300 WKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNV 359

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+  L +   + +A K+   M+  G K D +  + +++ LC  G+V E   L+  +    
Sbjct: 360 LLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNE 419

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
                +    ++L+ GLC++    +A K+ R M+KK
Sbjct: 420 NCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 455



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 153/307 (49%), Gaps = 5/307 (1%)

Query: 137 NLCEKARLA-NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
           +LC+K      EA+ +     +F+L P     N ++       +   A  + + M  +D+
Sbjct: 46  SLCQKPNSQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDV 105

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            P   +  ++I+ F +A + +   G+  ++ + G   N+   + +L G+CR G +  A+ 
Sbjct: 106 LPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMG 165

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           L+ EM ++    SP++V+Y ++I   C    +KEA+G+L  MEA GC PN VT +TL+ G
Sbjct: 166 LIREMGRK--SVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDG 223

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C +G +DEA +L++ +   G  +    Y +L+        L   ++LF +ML  G+  +
Sbjct: 224 LCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISAN 283

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  S ++  LC  GQ  E   +   + + G    V +  ++ L+ GLC+   +  A  L
Sbjct: 284 VVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVT--YTGLIDGLCKDGRATHAMDL 341

Query: 436 ARFMLKK 442
              M++K
Sbjct: 342 LNLMVEK 348



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 123/256 (48%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  VL  M E  + PD + Y  +I   C+ G    A +L+  M      P  +TY  ++
Sbjct: 302 EANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLL 361

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C  G + DA  + ++M   G  A++V Y+ L+ G+C  G ++ AL+L   M      
Sbjct: 362 SGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENC 421

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PNV T+  +I   C +G + +A+ I  +M   G   N VT + L+ G    G + EA 
Sbjct: 422 LEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAM 481

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L  +V+  G V +   YS L+    + + L  A+ LF +M   G+ P     + ++  L
Sbjct: 482 ELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 541

Query: 387 CLGGQVLEGFCLYEDI 402
           C  G + +   L++++
Sbjct: 542 CKEGSLEQAKSLFQEM 557



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 156/361 (43%), Gaps = 45/361 (12%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D++    E+G   S     V+ +   K  L  +A  +LR M E   + D + YN +++ 
Sbjct: 339 MDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKG 398

Query: 174 FCEKGDMIAADELMKGMGLID----LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
            C+KG +  A +L   M   D    L P++ T+  +I G C  GRL  A  + + M + G
Sbjct: 399 LCDKGKVDEALKLFNSM--FDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKG 456

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              NLV Y+ LL G  + G ++ A+EL  ++   G    PN  TY+ +I  FC   M+  
Sbjct: 457 SCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLG--FVPNSFTYSILIDGFCKMRMLNI 514

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV--------------VAG 335
           A G+   M   G  P     +TL+   C EG+L++A  L  ++              +  
Sbjct: 515 AKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMID 574

Query: 336 GSVSSGG---------------------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G++ +G                       +S+L+  L +   L EA+    +M+ASG  P
Sbjct: 575 GTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTP 634

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D L    +++ L   G   E   L   +   G  + +D  I S +L  LC     V+  +
Sbjct: 635 DALVYDSLLKGLSSKGDTTEIINLLHQMAAKG--TVLDRKIVSTILTCLCHSIQEVDVME 692

Query: 435 L 435
           L
Sbjct: 693 L 693



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 119/248 (47%), Gaps = 2/248 (0%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C KA    EAM + +++ +    P++  Y+ +I  FC+   +  A  L   M    L P 
Sbjct: 471 CLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPA 530

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           +  Y +++   C  G LE A  LF+ M    C  ++++++ ++DG  + G  +   EL  
Sbjct: 531 LFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQM 590

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +M + G    P+ +T++++I      G + EA   L+RM A G  P+ +   +L+KG   
Sbjct: 591 KMVEMG--LRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSS 648

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           +G+  E   L+ ++ A G+V      S+++  L  + +  +  +L         +   ++
Sbjct: 649 KGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASIS 708

Query: 379 CSVMIREL 386
           C+ ++ +L
Sbjct: 709 CNELLMQL 716


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 194/392 (49%), Gaps = 22/392 (5%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKA 142
             +Q     SS + +  C+  ++ +   ++    E   + GC+  V     ++  LC K 
Sbjct: 366 VGIQPDVTTSSVLIDMLCKKGKVIEANKLL----EVVIQRGCIPDVVTCTTLVKGLCMKH 421

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL------IDLY 196
           R++ +A  +  KM +    P+ +    +++  C+ G++  A EL K M        I+  
Sbjct: 422 RIS-KATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCK 480

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+ I+Y  +I G C  GR ++A  LFK MK  G   ++++Y++L+ G CR G  + A  L
Sbjct: 481 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 540

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             EM   G    P+V T++ +I + C +G + EA  +L+ M   GC PN VT +TL+KG 
Sbjct: 541 FNEMVDIG--VQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGL 598

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA------S 370
           C+   + EA QL  K+   G +     Y +L+  L +T  +K A +L  KML+      +
Sbjct: 599 CMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGT 658

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
             KPD ++ S++I  LC  G+  E   L+++++ +G + +V S  ++ L+ G CR     
Sbjct: 659 NFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVIS--YTSLIHGFCRSGKLE 716

Query: 431 EAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +A  L   M+ + + L       ++    K G
Sbjct: 717 DAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEG 748



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 161/298 (54%), Gaps = 6/298 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A  +  +M +  ++PD    + +I + C+KG +I A++L++ +      PD++T  +++
Sbjct: 355 KAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLV 414

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL----LGEMEK 262
           KG C   R+  A  LF  M++ GC  N+V  + L+ G+C+ G+++ ALEL    L +   
Sbjct: 415 KGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSP 474

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G +C PN ++Y+ +I   C  G   EA  +   M+ALG  P+ ++ ++LI GFC  G  
Sbjct: 475 YGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKW 534

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            +A  L +++V  G       +S L+  L +  ++ EA +L   M+  G  P+ +  + +
Sbjct: 535 KDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTL 594

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           ++ LC+  ++ E   L+  ++K+G L  V +  +  L+ GLC+  +   A +L + ML
Sbjct: 595 VKGLCMNDRISEATQLFMKMQKLGCLPDVVT--YGTLMKGLCQTGNIKTALELHKKML 650



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 165/311 (53%), Gaps = 7/311 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   +   +A  +  +M +  +R D    + +I + C++G +I A+EL++ M   
Sbjct: 162 LIHGFCRSGKW-EKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQR 220

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               DI+TY ++IKG C   R+ +A  LF  M++ GC  + +AY  L+ G+C+ G++  A
Sbjct: 221 GCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTA 280

Query: 254 LELLGEMEKEGG----DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           L+L  EM  + G     C P +++Y+ +I   C      EA  +   M+A G  P+ ++ 
Sbjct: 281 LQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISY 340

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           +TLI GFC+ G  ++A  L ++++  G        S L+  L +  ++ EA KL   ++ 
Sbjct: 341 TTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQ 400

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            G  PD + C+ +++ LC+  ++ +   L+  ++K+G + +V +   + L+ GLC+  + 
Sbjct: 401 RGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVT--CATLMKGLCQSGNI 458

Query: 430 VEAAKLARFML 440
             A +L + ML
Sbjct: 459 KIALELHKNML 469



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 162/314 (51%), Gaps = 11/314 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K R  +EA  + ++M    + PD I Y  +I  FC  G    A  L   M  +
Sbjct: 308 IIDGLC-KDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDV 366

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ T   +I   C  G++ +A  L +V+ + GC  ++V  + L+ G+C    + +A
Sbjct: 367 GIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKA 426

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM------EALGCAPNRV 307
            +L  +M+K G  C PNVVT  ++++  C  G +K AL +   M        + C PN +
Sbjct: 427 TQLFLKMQKLG--CMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAI 484

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           + S +I G C  G  DEA +L  ++ A G +     Y+SL+    R+ + K+A+ LF++M
Sbjct: 485 SYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEM 544

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           +  GV+PD    SV+I  LC  G+V+E   L E + + G + +  +  ++ L+ GLC  +
Sbjct: 545 VDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVT--YTTLVKGLCMND 602

Query: 428 HSVEAAKLARFMLK 441
              EA +L   M K
Sbjct: 603 RISEATQLFMKMQK 616



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 152/290 (52%), Gaps = 6/290 (2%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M    ++PD      +I +FC++G +I A+EL++ M       DI+TY ++IKG C   R
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL----ELLGEMEKEGGDCSPN 270
           + +A  LF  MK+ GC  + +AY  L+ G+C+ G +  AL    E+L +  + G  C P 
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           +V+Y+ +I   C      EA  +   M+A G  P+ ++ ++LI GFC  G  ++A  L +
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFN 180

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +++  G  S     S L+  L +  ++ EA +L   M+  G   D +  S +I+ LC+  
Sbjct: 181 EMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKH 240

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           ++ E   L+  ++K+G     D+  +  L+ GLC+  +   A +L + ML
Sbjct: 241 RISEATRLFMSMQKLG--CRPDAIAYGTLMKGLCQTGNINTALQLHQEML 288



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 140/265 (52%), Gaps = 9/265 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R  +EA  + ++M    + PD I Y ++I  FC  G    A  L   M  I
Sbjct: 489 IIDGLCKCGR-EDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDI 547

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ T+  +I   C  G++ +A  L +VM + GC  N V Y+ L+ G+C    +  A
Sbjct: 548 GVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEA 607

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM------EALGCAPNRV 307
            +L  +M+K G  C P+VVTY ++++  C  G +K AL +  +M            P+ +
Sbjct: 608 TQLFMKMQKLG--CLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVI 665

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           + S +I G C  G  DEA +L  ++ A G + +   Y+SL+    R+ +L++A+ LF++M
Sbjct: 666 SYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEM 725

Query: 368 LASGVKPDGLACSVMIRELCLGGQV 392
           +  GV+ + +  SVMI   C  GQ+
Sbjct: 726 VDQGVQLNAVTYSVMIHGFCKEGQI 750



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 135/241 (56%), Gaps = 7/241 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   +   +A ++  +M +  ++PD   ++ +I + C++G +I A+EL++ M   
Sbjct: 524 LIHGFCRSGKW-KDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQR 582

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+ +TY +++KG C   R+ +A  LF  M++ GC  ++V Y  L+ G+C+ G+++ A
Sbjct: 583 GCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTA 642

Query: 254 LEL----LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           LEL    L +  + G +  P+V++Y+ +I   C  G   EA  +   M+ALG  PN ++ 
Sbjct: 643 LELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISY 702

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           ++LI GFC  G L++A  L +++V  G   +   YS ++    +  ++ +A  LF KM A
Sbjct: 703 TSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEA 760

Query: 370 S 370
           +
Sbjct: 761 N 761



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 11/314 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K R  +EA  + ++M    + PD I Y ++I  FC  G    A  L   M  +
Sbjct: 127 IIDGLC-KDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDV 185

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  D+ T   +I   C  G++ +A  L +VM + GC  ++V YS L+ G+C    +  A
Sbjct: 186 GIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEA 245

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM------EALGCAPNRV 307
             L   M+K G  C P+ + Y ++++  C  G +  AL +   M        + C P  +
Sbjct: 246 TRLFMSMQKLG--CRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLI 303

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           + S +I G C +   DEA +L  ++ A G +     Y++L+     + + ++A+ LF++M
Sbjct: 304 SYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEM 363

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           L  G++PD    SV+I  LC  G+V+E   L E + + G +  V +   + L+ GLC K+
Sbjct: 364 LDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVT--CTTLVKGLCMKH 421

Query: 428 HSVEAAKLARFMLK 441
              +A +L   M K
Sbjct: 422 RISKATQLFLKMQK 435



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 151/303 (49%), Gaps = 12/303 (3%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +L  M +     D + Y+ +I+  C K  +  A +L   M  +   PD I Y +++
Sbjct: 28  EANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLM 87

Query: 207 KGFCNAGRLEDACGLFKVM----KRHG--CAANLVAYSALLDGICRLGSMERALELLGEM 260
           KG C  G++  A  L + M     ++G  C   LV+YS ++DG+C+    + A EL  EM
Sbjct: 88  KGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEM 147

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           + +G    P+V++YTS+I  FC  G  ++A  + + M  +G   +  T S LI   C EG
Sbjct: 148 KAQG--MMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEG 205

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            + EA +L++ ++  G +     YS+L+  L    R+ EA +LF  M   G +PD +A  
Sbjct: 206 KVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYG 265

Query: 381 VMIRELCLGGQVLEGFCLYE----DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
            +++ LC  G +     L++    D  + G         +S+++ GLC+     EA +L 
Sbjct: 266 TLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELF 325

Query: 437 RFM 439
           + M
Sbjct: 326 KEM 328



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 133/255 (52%), Gaps = 10/255 (3%)

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           + + PD+ T   +I  FC  G++ +A  L +VM + GC  ++V YS L+ G+C    +  
Sbjct: 4   VGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISE 63

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM------EALGCAPNR 306
           A +L   M+K G  C P+ + Y ++++  C  G +  AL +   M        + C P  
Sbjct: 64  ATQLFMSMKKLG--CRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTL 121

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           V+ S +I G C +   DEA +L  ++ A G +     Y+SL+    R+ + ++A+ LF++
Sbjct: 122 VSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNE 181

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           ML  G++ D    S++I  LC  G+V+E   L E + + G +  +D   +S L+ GLC K
Sbjct: 182 MLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCI--LDIVTYSTLIKGLCMK 239

Query: 427 NHSVEAAKLARFMLK 441
           +   EA +L   M K
Sbjct: 240 HRISEATRLFMSMQK 254


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 167/332 (50%), Gaps = 11/332 (3%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A+ ++ +M E    PD   YN VI   C+ G +  AD L+         PD+ T+ ++I
Sbjct: 408 QALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLI 467

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C   +L++A  +   M  HG + +++ Y+++L+G+C+ G  E  +     M ++G  
Sbjct: 468 DGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKG-- 525

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PN++TY  + + FC    ++EAL +++ M+  G  P+ V   TL+KGFC  G+LD AY
Sbjct: 526 CVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAY 585

Query: 327 QLIDKVVAGGSVSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           QL  +V      S     Y+ ++        +  AEKLF+KM  +G  PD     VMI  
Sbjct: 586 QLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDG 645

Query: 386 LCLGGQVLEGFC-LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            C  G +  G+  L   IEK G + S+ +     +L  LC K    EA  +   M+ K I
Sbjct: 646 FCKTGNINSGYSFLLVKIEK-GLIPSLTT--FGRVLNCLCLKRRVHEAVGIIHLMVHKGI 702

Query: 445 WLQGPYVDKIVEHLKK--SGDEELITNLPKIG 474
             +   V+ I E  KK  +  + ++ NL K G
Sbjct: 703 VPE--VVNTIFEADKKEVAAPKIVVENLMKKG 732



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 156/324 (48%), Gaps = 10/324 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  ++  EA   LRKM      PD   YN++I  +C+ G M  AD++++     
Sbjct: 291 LICGLCKNFKVV-EAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFK 349

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  TY S+I G C  G ++ A  +F      G   NLV  + L+ G+ + G + +A
Sbjct: 350 GFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQA 409

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+L+ EM + G  CSP++ TY  VI   C  G + +A  ++    A G  P+  T +TLI
Sbjct: 410 LKLMNEMSENG--CSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLI 467

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C +  LD A +++D++   G       Y+S++  L +  + ++    F  M+  G  
Sbjct: 468 DGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCV 527

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  +++    C   +V E   L E+++  G    V +     L+ G C  N  ++ A
Sbjct: 528 PNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVN--FGTLMKGFC-DNGDLDGA 584

Query: 434 KLARFMLKKRIWLQGPYVDKIVEH 457
               + L KR+  Q  +   I  +
Sbjct: 585 ----YQLFKRVDEQYKFSHTIATY 604



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 131/289 (45%), Gaps = 36/289 (12%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E GC   +    ++ N LC+   +++    V+  + +  L PD   +N +I  +C+K  +
Sbjct: 418 ENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHL-PDVFTFNTLIDGYCKKLKL 476

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A E++  M    + PD+ITY S++ G C AG+ ED  G FK+M   GC  N++ Y+ L
Sbjct: 477 DNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNIL 536

Query: 241 LDGICRLGSMERALELLGEMEKEG-------------GDC-------------------- 267
            +  C+   +E AL L+ EM+ +G             G C                    
Sbjct: 537 TESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYK 596

Query: 268 -SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            S  + TY  +I  F GK  M  A  + ++M   G +P+  T   +I GFC  GN++  Y
Sbjct: 597 FSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGY 656

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
             +   +  G + S   +  ++  L   +R+ EA  +   M+  G+ P+
Sbjct: 657 SFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPE 705



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 129/279 (46%), Gaps = 5/279 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ V  +M  F+  P    YN ++ +  E      A ++   M    + PD+ T+   +
Sbjct: 94  EAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRM 153

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           K FC   R   A  L   M   GC ++ VAY  ++ G         A EL  EM   G  
Sbjct: 154 KSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLG-- 211

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+++ +  +I   C KG ++E+  +L+++   G +PN  T++  I+GFC    L+EA 
Sbjct: 212 ICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAI 271

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+D  V  G       Y++L+  L +  ++ EAE    KM+  G +PDG   + +I   
Sbjct: 272 RLLDG-VGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGY 330

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           C  G +     +  D    GF+   D   +  L+ GLC+
Sbjct: 331 CKLGMMQNADQILRDGAFKGFVP--DESTYCSLINGLCQ 367



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 152/346 (43%), Gaps = 38/346 (10%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +DV E      C  SV+    I N+  + R  ++A  V  +M +  + PD   +   ++ 
Sbjct: 96  VDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKS 155

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC      AA  L+  M         + Y ++I GF       +A  LF+ M   G   +
Sbjct: 156 FCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPD 215

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           ++A++ L+  +CR G ++ +  LL ++ K G   SPN+ T    IQ FC + M+ EA+ +
Sbjct: 216 IMAFNKLIHTLCRKGHVQESERLLNKVLKRG--VSPNLFTVNIFIQGFCQRAMLNEAIRL 273

Query: 294 LD----------------------------------RMEALGCAPNRVTISTLIKGFCVE 319
           LD                                  +M   G  P+  T +++I G+C  
Sbjct: 274 LDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKL 333

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +  A Q++      G V     Y SL+  L +   +  A  +F++ +  G+KP+ + C
Sbjct: 334 GMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLC 393

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           + +++ L   G +L+   L  ++ + G   S D   +++++ GLC+
Sbjct: 394 NTLVKGLSQQGLILQALKLMNEMSENG--CSPDIWTYNLVINGLCK 437



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 128/261 (49%), Gaps = 5/261 (1%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y+  ++ +   G++++A  +F+ M    C  ++ +Y+A+++ +      ++A ++   M 
Sbjct: 79  YIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMR 138

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            +G    P+V T+T  ++ FC       A  +L+ M + GC  + V   T+I GF  E +
Sbjct: 139 DKG--IVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENH 196

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
             EA++L ++++  G       ++ L+  L R   ++E+E+L +K+L  GV P+    ++
Sbjct: 197 RVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNI 256

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            I+  C    + E   L   ++ +G   + D   ++ L+ GLC+    VEA    R M+ 
Sbjct: 257 FIQGFCQRAMLNEAIRL---LDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVN 313

Query: 442 KRIWLQGPYVDKIVEHLKKSG 462
           +     G   + I++   K G
Sbjct: 314 EGYEPDGFTYNSIIDGYCKLG 334


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 142/264 (53%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 142 AQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLIN 201

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 202 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 259

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 260 SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFE 319

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+    +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 320 HRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFC 379

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G + SV
Sbjct: 380 KXGDVWXGSKLLKEMQRDGHVPSV 403



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 127/274 (46%), Gaps = 15/274 (5%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+Y+ L++G  R G ++   
Sbjct: 119 YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGF 178

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M +A  + D M   G  PN VT +TLI 
Sbjct: 179 XLKSXMLASG--VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLID 236

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++         Y++L+  L +   LK+A  L  +M   G+KP
Sbjct: 237 GHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKP 296

Query: 375 DGLACSVMIRELCLGGQVLEGF-----CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           D +  + +I   C  G +   F      + E+I        +D   ++ L+ G C++  S
Sbjct: 297 DKITYTTLINGCCKEGDLDSAFEHRKRMIQENIR-------LDEVAYTALISGXCQEGRS 349

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V+A K+ R ML   +         I+    K GD
Sbjct: 350 VDAEKMLREMLSVGLKPDARTYTMIINEFCKXGD 383



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 94/187 (50%), Gaps = 3/187 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM + ++M    L PD I YN +I   C+KGD+  A  L+ 
Sbjct: 229 VTFTTLIDGHCKNGRV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID 287

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  L PD ITY ++I G C  G L+ A    K M +     + VAY+AL+ G C+ G
Sbjct: 288 EMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEG 347

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G    P+  TYT +I  FC  G +     +L  M+  G  P+ VT
Sbjct: 348 RSVDAEKMLREMLSVG--LKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVT 405

Query: 309 ISTLIKG 315
            + L+ G
Sbjct: 406 YNVLMNG 412



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 132/287 (45%), Gaps = 4/287 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           R D  +++ +I  + E G +  A E  +       +    T   +++        +   G
Sbjct: 50  RSDIYVFSGLIAAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 109

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            ++ +   G  A+L  ++ L+   C+ G +  A  +   + K G    P+VV+Y +++  
Sbjct: 110 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG--LRPSVVSYNTLMNG 167

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +   G + E   +   M A G  P+  T S LI G C E  +D+A +L D+++  G V +
Sbjct: 168 YIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPN 227

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  +++L+    +  R+  A +++ +ML+  + PD +  + +I  LC  G + +   L +
Sbjct: 228 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID 287

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
           ++   G     D   ++ L+ G C++     A +  + M+++ I L 
Sbjct: 288 EMSVKGL--KPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLD 332


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 156/280 (55%), Gaps = 20/280 (7%)

Query: 129 VKMMKVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           VK   V +N     LC+  RL  EA  +L +M      PD + Y++ +   C+ G ++ A
Sbjct: 183 VKADVVTYNTLMDGLCKAGRL-QEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNA 241

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM-KRHGCAANLVAYSALLD 242
            ++++ M   D  P+++TY +++ G C +G+++ A  + + M    GC  N+V YS ++D
Sbjct: 242 HQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVD 301

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C+LG  + A  ++  M + G  C P+VVTY+S++   C  G ++EA+  +  M   GC
Sbjct: 302 GLCKLGRTQEARSVMEAMARAG--CRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGC 359

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--------SVSSGGCYSSLVVELVRT 354
            PN VT  +L+ G C  G L EA ++++++ +GG        SVS+   Y++L+  L + 
Sbjct: 360 KPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVST---YNALIGGLCKA 416

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            R+ +A K F +M + G  PDG++ S ++  L   G+ L+
Sbjct: 417 GRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQ 456



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 211/441 (47%), Gaps = 29/441 (6%)

Query: 40  QKNPNNIEKTLATVKAK------------LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQ 87
           Q  P + E+ L T+ A+            L+  C +E  H     +++  +R  I    +
Sbjct: 23  QGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWH-----EAEELVRDMISRGGR 77

Query: 88  SSYRHSSF--MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           S+    ++  + +  C+  +++++  ++ +V+        ++  K+M    +LC+ ARL 
Sbjct: 78  STPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMA---SLCKSARLG 134

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
                +  +M      P  I +N +I   C + ++  AD L++ M    +  D++TY ++
Sbjct: 135 EALELLE-EMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTL 193

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + G C AGRL++A  L + MK  GCA ++VAYS+ + G+C+ G +  A ++L +M     
Sbjct: 194 MDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDH 253

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-GCAPNRVTISTLIKGFCVEGNLDE 324
           D  PNVVTY +++   C  G +  AL ++++M +  GC  N V  ST++ G C  G   E
Sbjct: 254 D--PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQE 311

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  +++ +   G       YSSLV  L +  +++EA +   +M   G KP+ +    ++ 
Sbjct: 312 ARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVH 371

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSS---VDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            LC  G++ E   + E++   G            ++ L+ GLC+     +A K  + M  
Sbjct: 372 GLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRS 431

Query: 442 KRIWLQGPYVDKIVEHLKKSG 462
           +     G     IVE L +SG
Sbjct: 432 QGCDPDGVSYSTIVEGLARSG 452



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 141/267 (52%), Gaps = 14/267 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C+  R+++   ++    E  K  GC   V      ++ LC+  ++ N A  VL +M + D
Sbjct: 198 CKAGRLQEAEQLL----ERMKASGCAPDVVAYSSFVYGLCKSGKVLN-AHQVLEQMRDSD 252

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMIKGFCNAGRLEDA 218
             P+ + YN ++   C+ G +  A E+M+ M   D    +++ Y +++ G C  GR ++A
Sbjct: 253 HDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEA 312

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             + + M R GC  ++V YS+L++G+C+ G +E A+E + EM  EG  C PN VTY S++
Sbjct: 313 RSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEG--CKPNAVTYCSLV 370

Query: 279 QIFCGKGMMKEALGILDRMEALG-----CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
              C  G + EA  +++ M + G     C P+  T + LI G C  G +D+A +   ++ 
Sbjct: 371 HGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMR 430

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEA 360
           + G    G  YS++V  L R+ R  +A
Sbjct: 431 SQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 141/268 (52%), Gaps = 10/268 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+++ +N ++  F ++G     + L++ M    + P++++Y  +++G C   R  +A  L
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 222 FKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            + M   G     +LV YS LL G C+ G +E + ELL E+   G    P+ + YT V+ 
Sbjct: 68  VRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRG--LRPDALMYTKVMA 125

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C    + EAL +L+ M   GC P  +T +TLI G C E NL+ A  L+  + A G  +
Sbjct: 126 SLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKA 185

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y++L+  L +  RL+EAE+L  +M ASG  PD +A S  +  LC  G+VL    + 
Sbjct: 186 DVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVL 245

Query: 400 EDIEKIGFLSSVDSDI--HSVLLLGLCR 425
           E +      S  D ++  ++ +L GLC+
Sbjct: 246 EQMRD----SDHDPNVVTYNTILDGLCK 269



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 162/391 (41%), Gaps = 81/391 (20%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC  +      + N   K     +   +L  M    ++P+ + YN ++   C+      A
Sbjct: 5   GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEA 64

Query: 184 DELMKGMGLIDL----YPDIITYVSMIKGFCNAGRLEDACGLFK---------------- 223
           +EL++ M  I       PD++TY +++ G+C AG++E++  L K                
Sbjct: 65  EELVRDM--ISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTK 122

Query: 224 -------------------VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
                               M R GC   L+ ++ L+ G CR  ++E A  LL  M   G
Sbjct: 123 VMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASG 182

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
                +VVTY +++   C  G ++EA  +L+RM+A GCAP+ V  S+ + G C  G +  
Sbjct: 183 --VKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLN 240

Query: 325 AYQ-------------------LIDKVVAGGSV-----------SSGGC------YSSLV 348
           A+Q                   ++D +   G +           SS GC      YS++V
Sbjct: 241 AHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVV 300

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L +  R +EA  +   M  +G +PD +  S ++  LC  G++ E      ++   G  
Sbjct: 301 DGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEG-- 358

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
              ++  +  L+ GLC      EA ++   M
Sbjct: 359 CKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 100/215 (46%), Gaps = 37/215 (17%)

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M++ G  C PN VT+ +++  F  +G   +   +L+ M A G  PN V+ + L++G C  
Sbjct: 1   MDRTG--CPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKL 58

Query: 320 GNLDEAYQLIDKVVAGGSVSSGG--CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
               EA +L+  +++ G  S+     YS+L+    +  +++E+ +L  ++++ G++PD L
Sbjct: 59  ERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDAL 118

Query: 378 ACSVMIRELCLGGQ-------------------------VLEGFCLYEDIEKIGFL---- 408
             + ++  LC   +                         ++ G C  +++E    L    
Sbjct: 119 MYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTM 178

Query: 409 --SSVDSDI--HSVLLLGLCRKNHSVEAAKLARFM 439
             S V +D+  ++ L+ GLC+     EA +L   M
Sbjct: 179 AASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERM 213


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 122/470 (25%), Positives = 209/470 (44%), Gaps = 62/470 (13%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-- 102
           + ++  AT+ +      +++ L R   +     +R   WA+ Q ++R +S +Y       
Sbjct: 40  STQQHTATLSSNFTPAQLLDTLRR--QNDETAALRLLSWASKQPNFRPNSSIYEEILRKL 97

Query: 103 --------MSRIKQNPS------------IIIDV---VEAYKEEGCVVSVKMMKVIFNLC 139
                   M  I Q               I ID     E Y+E  C+V V  M+V F L 
Sbjct: 98  GKVGSFNSMKDILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEILCIVEV--MEVEFGLA 155

Query: 140 EKARLANEAMWVL-------------RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
               L N  + VL               M    ++PD   +N +I+  C+   +  A  +
Sbjct: 156 LDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILV 215

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           M+ M    L PD  T+ ++++GF   G ++ A  + + M   GC    V  + L+ G C+
Sbjct: 216 MEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCK 275

Query: 247 LGSMERALELLGEMEKEGGD--------------CSPNVVTYTSVIQIFCGKGMMKEALG 292
            G +E AL  + EM  EG                C P+  TY  +I   C +G ++EALG
Sbjct: 276 EGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALG 335

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L  ME  GCA N +T +TLI GFC    ++EA ++ D++   G   +   Y++L+  L 
Sbjct: 336 LLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLC 395

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +++R++EA +L  +M+  G+KPD    + M+   C  G + +      DI +    +  +
Sbjct: 396 KSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKA----ADIVQTMTSNGCE 451

Query: 413 SDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
            DI  +  L+ GLC+      A++L R +  K + L     + +++ L K
Sbjct: 452 PDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFK 501



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 5/305 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +  +M     +PD   YN +I   C +G +  A  L++ M +     ++ITY ++I 
Sbjct: 298 AIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLID 357

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC   ++E+A  +F  M+  G + N V Y+ L+DG+C+   ++ A +L+ +M  EG   
Sbjct: 358 GFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEG--L 415

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+  TY S++  FC +G +++A  I+  M + GC P+ VT  TLI G C  G ++ A +
Sbjct: 416 KPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASR 475

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+  +   G V +   Y+ ++  L + KR KEA +LF +M   G  PD     ++ R L 
Sbjct: 476 LLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLS 535

Query: 388 -LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
             GG + E      ++ + GFL    S    +L  GLC  +      KL   +++K  + 
Sbjct: 536 NSGGPIGEAVDFVIEMIEKGFLPEFSS--FYMLAEGLCSLSMEDTLIKLVDLVMEKANFS 593

Query: 447 QGPYV 451
           Q   V
Sbjct: 594 QNEVV 598



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 157/321 (48%), Gaps = 21/321 (6%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC KA     A+ V+ +M  + L PD   +  +++ F E+G+M  A  + + M       
Sbjct: 203 LC-KAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPV 261

Query: 198 DIITYVSMIKGFCNAGRLEDACG----------------LFKVMKRHGCAANLVAYSALL 241
             +T   ++ GFC  GR+E+A                  L+  MK  GC  +   Y+ L+
Sbjct: 262 TNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLI 321

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           D +C  G ++ AL LL EME  G  C+ NV+TY ++I  FC    ++EA  I D+ME  G
Sbjct: 322 DSLCYRGKLQEALGLLREMEISG--CARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQG 379

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
            + N VT +TLI G C    + EA QL+D+++  G       Y+S++    R   +++A 
Sbjct: 380 LSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAA 439

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
            +   M ++G +PD +    +I  LC  G+V     L   I+  G +  +    ++ ++ 
Sbjct: 440 DIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMV--LTPHAYNPVIQ 497

Query: 422 GLCRKNHSVEAAKLARFMLKK 442
            L ++  + EA +L R M +K
Sbjct: 498 ALFKRKRTKEAMRLFREMEEK 518


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 171/330 (51%), Gaps = 13/330 (3%)

Query: 61  CVIE----VLHRCFPSQSQMGIRFFIWAALQSSYRHSS-FMYNRACEMSRIKQNPSIIID 115
           CVIE    V H     QS   + FF WA  +  Y H S   YN   ++S   +   +   
Sbjct: 116 CVIEKCGSVRHGIPLHQS---LAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWH 172

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++  K     +S++   ++     +A LA+EA+    +M ++   PD I ++ VI    
Sbjct: 173 LIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLS 232

Query: 176 EKGDMIAADELMKGMGLIDLY-PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            K     A        L D + PD+I Y ++++G+C AG + +A  +FK MK  G   N+
Sbjct: 233 RKRRASEAQSFFD--SLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNV 290

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             YS ++D +CR G + RA ++  +M   G  C+PN +T+ +++++    G  ++ L + 
Sbjct: 291 YTYSIVIDALCRCGQISRAHDVFADMLDSG--CAPNAITFNNLMRVHVKAGRTEKVLQVY 348

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           ++M+ LGC P+ +T + LI+  C + NL+ A ++++ ++      +   ++++   + + 
Sbjct: 349 NQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKK 408

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           + +  A +++SKM+ +  +P+ +  ++++R
Sbjct: 409 RDVNGAHRMYSKMMEAKCEPNTVTYNILMR 438



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 3/212 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+ I +NN++R+  + G      ++   M  +   PD ITY  +I+  C    LE+A  +
Sbjct: 323 PNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKV 382

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M +  C  N   ++ +   I +   +  A  +  +M +    C PN VTY  ++++F
Sbjct: 383 LNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMME--AKCEPNTVTYNILMRMF 440

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-S 340
            G       L +   M+     PN  T   L+  FC  G+ + AY+L  ++V    ++ S
Sbjct: 441 VGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPS 500

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
              Y  ++ +L R  +LK+ E+L  KM+  G+
Sbjct: 501 LSLYEMVLAQLRRAGQLKKHEELVEKMIQKGL 532



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 103/221 (46%), Gaps = 3/221 (1%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +I L  +      A  L+  M   ++   I T+  +I+ +  AG   +A   F  M+
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
            +GC  + +A+S ++  + R     RA E     +       P+V+ YT++++ +C  G 
Sbjct: 214 DYGCVPDKIAFSIVISNLSR---KRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGE 270

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + EA  +   M+  G  PN  T S +I   C  G +  A+ +   ++  G   +   +++
Sbjct: 271 ISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNN 330

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+   V+  R ++  +++++M   G +PD +  + +I   C
Sbjct: 331 LMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHC 371



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 115/262 (43%), Gaps = 5/262 (1%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  MI       + + A  L  +MK      ++  ++ L+    R G    A+     ME
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G  C P+ + ++ VI     K    EA    D ++     P+ +  + L++G+C  G 
Sbjct: 214 DYG--CVPDKIAFSIVISNLSRKRRASEAQSFFDSLKD-RFEPDVIVYTNLVRGWCRAGE 270

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           + EA ++  ++   G   +   YS ++  L R  ++  A  +F+ ML SG  P+ +  + 
Sbjct: 271 ISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNN 330

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           ++R     G+  +   +Y  ++K+G     D+  ++ L+   CR  +   A K+   M+K
Sbjct: 331 LMRVHVKAGRTEKVLQVYNQMKKLG--CEPDTITYNFLIEAHCRDENLENAVKVLNTMIK 388

Query: 442 KRIWLQGPYVDKIVEHLKKSGD 463
           K+  +     + I  +++K  D
Sbjct: 389 KKCEVNASTFNTIFRYIEKKRD 410



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 5/179 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           +  YN   E     +N    + V+    ++ C V+      IF   EK R  N A  +  
Sbjct: 360 TITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYS 419

Query: 154 KMPEFDLRPDTIIYNNVIRLF--CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           KM E    P+T+ YN ++R+F   +  DM+   ++ K M   ++ P++ TY  ++  FC 
Sbjct: 420 KMMEAKCEPNTVTYNILMRMFVGSKSTDMVL--KMKKEMDDKEVEPNVNTYRLLVTMFCG 477

Query: 212 AGRLEDACGLFKVMKRHGC-AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
            G   +A  LFK M    C   +L  Y  +L  + R G +++  EL+ +M ++G    P
Sbjct: 478 MGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLVARP 536


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 199/430 (46%), Gaps = 23/430 (5%)

Query: 60  TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM---SRIKQNPSIIIDV 116
           T V++ L   F   +   ++FF WA  +  Y H+   Y    E+   +R        +  
Sbjct: 80  TTVLQTLG--FLRDTSKALQFFNWAQ-EMGYTHTEQSYFSMLEILGRNRHLNTARNFLFS 136

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           +E        +  +    +     +A L  E++ V   M    + P  + +N+++ +  +
Sbjct: 137 IEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLK 196

Query: 177 KGDMIAA----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
           +G    A    DE++   G+    PD  T+  +I+GFC  G ++D   +F  + R GC  
Sbjct: 197 RGRTNMAKKVYDEMLSTYGVT---PDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEP 253

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++V Y+ L+DG+CR G +  A  ++  M K+  D +PNVVTYT++I+ +C K  +++AL 
Sbjct: 254 DVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALA 313

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC-YSSLVVEL 351
           + + M   G   N +T +TLIKG C     ++   +++     G+ S   C +++L+   
Sbjct: 314 VFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCH 373

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
                L +A K+F +M    ++PD    S ++R LC GG   +   L + + +   L S 
Sbjct: 374 CHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSG 433

Query: 412 DS-----DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK----KSG 462
           D        ++ +   LC    + +A K  R ++++       Y   I+ H K    +SG
Sbjct: 434 DGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESG 493

Query: 463 DEELITNLPK 472
            E L+  L K
Sbjct: 494 YELLVLMLRK 503



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 147/381 (38%), Gaps = 79/381 (20%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C K R   +A+ V  +M    L+ + I YN +I+  CE        ++++
Sbjct: 293 VTYTTLIRGYCAK-REIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILE 351

Query: 189 GM-GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           G  G     PD  T+ +++   C+AG L+DA  +F+ M       +   YSAL+  +C+ 
Sbjct: 352 GTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQG 411

Query: 248 GSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G  E+A +LL ++ +      G  C P V  Y  + +  C  G  K+A     ++   G 
Sbjct: 412 GHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRG- 470

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLI--------------------------------- 329
             +  +  TLI G C EG  +  Y+L+                                 
Sbjct: 471 TQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQ 530

Query: 330 --DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD------------ 375
             +K++      +   + S++ +L+   R  E+  L   ML   ++ +            
Sbjct: 531 SLEKMLRSSHRPNSSTFHSILAKLLEQGRASESASLIQLMLDKNIRQNLSFSTGCVRLLF 590

Query: 376 ----------------GLACSV----MIRELCLGGQVLEGF-CLYEDIEKIGFLSSVDSD 414
                           G   SV    +IR LC   +V++G   L   +E   F   VD D
Sbjct: 591 GAGMNDKAFQLVHLLYGKGYSVKMEELIRYLCHCRKVIQGSKLLLFSLESHQF---VDMD 647

Query: 415 IHSVLLLGLCRKNHSVEAAKL 435
           + + ++  LC  N   EA  L
Sbjct: 648 LCNTVIFQLCEINKLSEAFSL 668



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 120/286 (41%), Gaps = 14/286 (4%)

Query: 123 EGCVVSVKMMKVIFN-LCE--KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           +GC   V     IF  LCE  K + A +A   L +    D  P +  Y  +I   C++G 
Sbjct: 434 DGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQD--PPS--YKTLIMGHCKEGT 489

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
             +  EL+  M   D  PD  TY S+I G  +  +   A    + M R     N   + +
Sbjct: 490 FESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHS 549

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           +L  +   G    +  L+  M  +  +   N+   T  +++  G GM  +A  ++  +  
Sbjct: 550 ILAKLLEQGRASESASLIQLMLDK--NIRQNLSFSTGCVRLLFGAGMNDKAFQLVHLLYG 607

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G +   V +  LI+  C    + +  +L+   +           ++++ +L    +L E
Sbjct: 608 KGYS---VKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEINKLSE 664

Query: 360 AEKLFSKMLASGVKPDGLACSVMIR-ELCLGGQVLEGFCLYEDIEK 404
           A  L+ K++  GV    L+C   ++  L  GG++ E   + + +E+
Sbjct: 665 AFSLYYKLVEMGVHQQ-LSCQNQLKVSLKAGGKLEEAESVQKRMER 709


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/505 (24%), Positives = 215/505 (42%), Gaps = 68/505 (13%)

Query: 2   PRFSLSRILSSSVNIKNSKIFALHFTTASPAERF-----YTHLQKNP--------NNIEK 48
           P    S++ S+S    NS+     FTT  P E        + L  NP        N I K
Sbjct: 38  PPPHASKLGSTSTVGSNSRWV---FTTPIPPEWVEPLYDLSDLASNPQPQPSPWVNQILK 94

Query: 49  TL---ATVKAKLDSTCVIEVLHRCFPS-------------QSQMGIRFFIWAALQSSYRH 92
            L     +++ LDS C  + L +  P+             +  +  RFF WA  Q +Y H
Sbjct: 95  LLDGSVNMESNLDSYCS-KFLIKLSPNFVAFVLKSDAIRGKPDIAFRFFWWAGKQKNYIH 153

Query: 93  SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVL 152
               Y    ++  +  +   +  +   +KE+G +++V     +        +  E +WV 
Sbjct: 154 KIECYVSLIDVLSLSSDFDRVRCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVW 213

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           R+M E  + P    +N ++        + +A+ + + M    + PD+++Y +MIKG+C A
Sbjct: 214 RRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKA 273

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD------ 266
           G  + A   F  M++     + + Y  L+      G+ +  L L  EME+ G +      
Sbjct: 274 GNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAY 333

Query: 267 ---------------------------CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
                                      C  NV  YT++I  +   G + EA+ + +RM+ 
Sbjct: 334 SLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKG 393

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  P+ VT   ++ G C  G LDEA +  +         +   YSSL+  L +  R+ E
Sbjct: 394 EGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDE 453

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           AEK F +M+  G   D    + +I  L   G++ E   L++ +EK G   +V +  +++L
Sbjct: 454 AEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYT--YTIL 511

Query: 420 LLGLCRKNHSVEAAKLARFMLKKRI 444
           + GL +++ + EA KL   M+ K I
Sbjct: 512 ISGLFKEHRNEEALKLWDLMIDKGI 536



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 3/277 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V E   ++GC  +V +   + +   K    NEA+ +  +M      PD + Y  ++   C
Sbjct: 352 VFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLC 411

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A E  +     ++  + + Y S+I G   AGR+++A   F+ M   GC  +  
Sbjct: 412 KSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSY 471

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+AL+D + + G ME AL L   MEKEG  C   V TYT +I     +   +EAL + D
Sbjct: 472 CYNALIDALAKSGKMEEALVLFKRMEKEG--CDQTVYTYTILISGLFKEHRNEEALKLWD 529

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   G  P   +   L  G C+ G +  A +++D++   G +     +  ++  L +  
Sbjct: 530 LMIDKGITPTTASFRALSVGLCLSGKVARACKILDELAPMGVIPETA-FEDMINVLCKAG 588

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           R ++A KL   ++  G +  G   +++I  L   G  
Sbjct: 589 RTEQACKLADGIVDRGREVPGRVRTILINALRKAGNA 625


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 152/275 (55%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L K M    + PD+ TY  +I 
Sbjct: 159 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLIN 218

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++D   LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 219 GLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 276

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP++VTY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 277 SPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFE 336

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 337 YRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 396

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V  G  L +++++ G++ SV +  ++VL+ G
Sbjct: 397 KKGDVWTGSKLMKEMQRDGYVPSVVT--YNVLMNG 429



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 113/240 (47%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ K H           +L+ + +L    +  +L+
Sbjct: 69  DIYVFSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKL----KYFKLV 124

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC +G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 125 WGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNG 184

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+L+E ++L   + A G       YS L+  L +  ++ +  +LF +ML  G+ P+
Sbjct: 185 YIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPN 244

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 245 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL--SPDLVTYNTLIYGLCKKGDLKQAQDL 302



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC++ R + +A  +LR+M    L+P+   Y  +I  FC+KGD+    +LMK
Sbjct: 351 VAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMK 409

Query: 189 GMGLIDLYPDIITYVSMIKG 208
            M      P ++TY  ++ G
Sbjct: 410 EMQRDGYVPSVVTYNVLMNG 429


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 145/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M +  + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML  G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYMPSV 416



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++    +G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLD----KGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLN 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A +  G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMQVSGVQPDVYTYSVLINGLCKESKM-DDANXLFDEMLDKGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M KE  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
             +G  P   T + +I  FC +G++    +L+ ++   G + S
Sbjct: 373 LNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPS 415



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 122/270 (45%), Gaps = 8/270 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ K H           +L+ + +L    +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  F  +G ++ A  + D +      P+ V+ +TL+ G
Sbjct: 121 WGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L + +   G       YS L+  L +  ++ +A  LF +ML  G+ P+
Sbjct: 181 YIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 241 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
              M+ K +         +++   K GD E
Sbjct: 299 IDEMIMKGLXPDKITYTTLIDGNCKEGDLE 328


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 181/382 (47%), Gaps = 24/382 (6%)

Query: 78  IRFFIWAALQSSYRHSS----FMYNRACEMSRIKQNPSIIIDVVEAYKEE---------- 123
           I+FF W + +  Y+H+      M NR            I I +++A + E          
Sbjct: 92  IQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFL 151

Query: 124 ------GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
                 G   S+     +     K  +   A  + ++M    ++P  + +N +I +  +K
Sbjct: 152 NEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKK 211

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A+ ++  +   DL PD+ TY S+I G C    L+ A G+F  M + GC  N V Y
Sbjct: 212 GKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTY 271

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           S L++G+C  G ++ AL++L EM ++G    P V TYT  I   C     +EA+ ++ RM
Sbjct: 272 STLINGLCNEGRVDEALDMLEEMIEKG--IEPTVYTYTLPITALCAIEHEEEAIELVARM 329

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           +  GC PN  T + LI G    G L+ A  L  K++  G V +   Y++L+ EL    R 
Sbjct: 330 KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRF 389

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
             A K+F  M   G   +    + +I+ LCLGG + +   L+E + K+G L +V +  ++
Sbjct: 390 STALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVT--YN 447

Query: 418 VLLLGLCRKNHSVEAAKLARFM 439
            L+ G   K +   AA+L   M
Sbjct: 448 TLINGYLTKGNVNNAARLLDLM 469



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 138/280 (49%), Gaps = 4/280 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +AM +  KM +    P  + YN +I  +  KG++  A  L+  M      PD  TY  ++
Sbjct: 426 KAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELV 485

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GF   G+LE A   F+ M   G   N V+Y+AL+DG  + G ++ AL LL  ME+ G  
Sbjct: 486 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMG-- 543

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C+PNV +Y +VI     +    EA  I D+M   G  PN +T +TLI G C  G    A+
Sbjct: 544 CNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAF 603

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           ++   +     + +   YSSL+  L +  +  EAE L  +M   G+ PD +  + +I   
Sbjct: 604 KIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGF 663

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
            + G++   F L   +  +G     +   +SVLL GL ++
Sbjct: 664 VVLGRIDHAFLLLRRMVDMG--CKPNYRTYSVLLKGLQKE 701



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 149/314 (47%), Gaps = 17/314 (5%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +EG V +      + N LC   R +  A+ +   M       +T  YN +I+  C  GD+
Sbjct: 366 KEGLVPNTVTYNALINELCVGGRFST-ALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDI 424

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L + M  +   P ++TY ++I G+   G + +A  L  +MK +GC  +   Y+ L
Sbjct: 425 EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 484

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G  + G +E A     EM + G   +PN V+YT++I      G +  AL +L RME +
Sbjct: 485 VSGFSKWGKLESASFYFQEMVECG--LNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEM 542

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GC PN  + + +I G   E    EA ++ DK+V  G + +   Y++L+  L R  R + A
Sbjct: 543 GCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFA 602

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG-------FLSSVDS 413
            K+F  M      P+    S +I  LC  G+  E   L +++E+ G       F S +D 
Sbjct: 603 FKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDG 662

Query: 414 DI------HSVLLL 421
            +      H+ LLL
Sbjct: 663 FVVLGRIDHAFLLL 676



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 2/241 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A  +L  M E    PD   YN ++  F + G + +A    + M    L P+ ++Y ++
Sbjct: 460 NNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTAL 519

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G    G+++ A  L K M+  GC  N+ +Y+A+++G+ +      A ++  +M ++G 
Sbjct: 520 IDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQG- 578

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PNV+TYT++I   C  G  + A  I   ME   C PN  T S+LI G C EG  DEA
Sbjct: 579 -LLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA 637

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L+ ++   G       ++SL+   V   R+  A  L  +M+  G KP+    SV+++ 
Sbjct: 638 EILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKG 697

Query: 386 L 386
           L
Sbjct: 698 L 698



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 3/268 (1%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           YN        K N +    +++  KE GC         + +   K      A +  ++M 
Sbjct: 446 YNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMV 505

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           E  L P+ + Y  +I    + G +  A  L+K M  +   P++ +Y ++I G     R  
Sbjct: 506 ECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFS 565

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           +A  +   M   G   N++ Y+ L+DG+CR G  + A ++  +MEK    C PN+ TY+S
Sbjct: 566 EAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKR--KCLPNLYTYSS 623

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   C +G   EA  +L  ME  G AP+ VT ++LI GF V G +D A+ L+ ++V  G
Sbjct: 624 LIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMG 683

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              +   YS L+  L +   L E EK+F
Sbjct: 684 CKPNYRTYSVLLKGLQKECLLLE-EKIF 710



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 39/262 (14%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +E A  L+K M   G   +L+ ++ L++ + + G +  A  +L ++ +   D SP+V TY
Sbjct: 179 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQY--DLSPDVFTY 236

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           TS+I   C    +  A G+ DRM   GC PN VT STLI G C EG +DEA  ++++++ 
Sbjct: 237 TSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 296

Query: 335 GG-----------------------------SVSSGGC------YSSLVVELVRTKRLKE 359
            G                              +   GC      Y++L+  L R  +L+ 
Sbjct: 297 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 356

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A  L+ KML  G+ P+ +  + +I ELC+GG+      ++  +E  G L+  ++  ++ +
Sbjct: 357 AIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA--NTQTYNEI 414

Query: 420 LLGLCRKNHSVEAAKLARFMLK 441
           + GLC      +A  L   MLK
Sbjct: 415 IKGLCLGGDIEKAMVLFEKMLK 436



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 13/199 (6%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           I + +++  +E GC  +V+    + N   K    +EA  +  KM E  L P+ I Y  +I
Sbjct: 531 IALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLI 590

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
              C  G    A ++   M      P++ TY S+I G C  G+ ++A  L K M+R G A
Sbjct: 591 DGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLA 650

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            + V +++L+DG   LG ++ A  LL  M   G  C PN  TY+ ++     KG+ KE L
Sbjct: 651 PDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMG--CKPNYRTYSVLL-----KGLQKECL 703

Query: 292 GILDRMEA------LGCAP 304
            + +++        LGC P
Sbjct: 704 LLEEKIFPLVDNYFLGCNP 722


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 161/318 (50%), Gaps = 7/318 (2%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           MP+         Y  +++  C  G +  A  +  GM      PD   Y  M+ G C AGR
Sbjct: 135 MPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGR 194

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
             +A  L       G   N+  Y+AL+DG C  G +E A+++   M+ +G  C PNV TY
Sbjct: 195 AGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKG--CLPNVRTY 252

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           T +I  FC  G ++ A+ +  RM   G APN VT +TLI+G C EG+L+ A++L+  + A
Sbjct: 253 TQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEA 312

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G   +      L+  L +  R++EA++    ++  G+K + +  + MI  LC  G+   
Sbjct: 313 CGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDG 372

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG-PYVDK 453
              L + I   GF+   D+ ++S L+ GLCR+N  +EA  L   M++  +     P+   
Sbjct: 373 AHNLMQKIITEGFVP--DAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTIL 430

Query: 454 IVEHLK--KSGDEELITN 469
           I +HL+  +S   ++I++
Sbjct: 431 IDKHLREFRSDSPKMISD 448



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 2/265 (0%)

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           A +  EAM V   M      PD+ +Y+ ++   C  G    A  L+         P++  
Sbjct: 157 AGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAV 216

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y ++I G+C+ G LE A  +FK M+  GC  N+  Y+ L+ G C+ G +ERA+ L   M 
Sbjct: 217 YNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMI 276

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           + G   +PNVVTYT++IQ  C +G ++ A  +L  MEA G APN  T   LI   C  G 
Sbjct: 277 EAG--LAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGR 334

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           ++EA Q +  +V  G   +   Y+S++  L ++ +   A  L  K++  G  PD    S 
Sbjct: 335 IEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSS 394

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIG 406
           +I  LC   ++LE   L  D+ + G
Sbjct: 395 LIDGLCRENKLLEAISLLNDMIESG 419



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 151/317 (47%), Gaps = 8/317 (2%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +MP  +L      Y  +I  +C  GD+ AA   +  +    L PD   Y S + G+C  G
Sbjct: 68  RMPVRNLH----TYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTG 123

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
               AC LF +M + GCA     Y+ALL G+C  G +  A+ +   M  +G  C+P+   
Sbjct: 124 LFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDG--CAPDSHV 181

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y+ ++   CG G   EA+ +L      G  PN    + LI G+C  G+L+ A  +   + 
Sbjct: 182 YSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQ 241

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           + G + +   Y+ L+    ++ +++ A  L+S+M+ +G+ P+ +  + +I+  C  G + 
Sbjct: 242 SKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLE 301

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
             F L   +E  G   +  + +  VL+  LC+     EA +    +++K I +       
Sbjct: 302 HAFRLLHSMEACGLAPNEWTCL--VLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTS 359

Query: 454 IVEHLKKSGDEELITNL 470
           +++ L KSG  +   NL
Sbjct: 360 MIDALCKSGKFDGAHNL 376



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 131/262 (50%), Gaps = 4/262 (1%)

Query: 123 EGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC     +  + +  LC   R A EA+ +L         P+  +YN +I  +C  GD+ 
Sbjct: 173 DGCAPDSHVYSIMVHGLCGAGR-AGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLE 231

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A ++ KGM      P++ TY  +I GFC +G++E A  L+  M   G A N+V Y+ L+
Sbjct: 232 LAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLI 291

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G C  G +E A  LL  ME  G   +PN  T   +I   C  G ++EA   L  +   G
Sbjct: 292 QGQCSEGHLEHAFRLLHSMEACG--LAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKG 349

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
              N+V  +++I   C  G  D A+ L+ K++  G V     YSSL+  L R  +L EA 
Sbjct: 350 IKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAI 409

Query: 362 KLFSKMLASGVKPDGLACSVMI 383
            L + M+ SGV+ + +  +++I
Sbjct: 410 SLLNDMIESGVQANAVPFTILI 431



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 129/281 (45%), Gaps = 8/281 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           ++ TY ++I  +C+AG L  A      + R G A +  AY++ + G CR G    A  L 
Sbjct: 73  NLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLF 132

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M + G  C+    TY +++Q  CG GM++EA+ +   M   GCAP+    S ++ G C
Sbjct: 133 LLMPQRG--CARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLC 190

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G   EA  L+   +  G V +   Y++L+     T  L+ A  +F  M + G  P+  
Sbjct: 191 GAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVR 250

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I   C  G+V     LY  + + G   +V +  ++ L+ G C + H   A +L  
Sbjct: 251 TYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVT--YTTLIQGQCSEGHLEHAFRLLH 308

Query: 438 FM----LKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
            M    L    W     +D + +H +    ++ + +L + G
Sbjct: 309 SMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKG 349



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 153/317 (48%), Gaps = 6/317 (1%)

Query: 112 IIIDVVEAYKEEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           + ID+ +  + +GC+ +V+   ++I   C+  ++   AM +  +M E  L P+ + Y  +
Sbjct: 232 LAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKV-ERAMVLYSRMIEAGLAPNVVTYTTL 290

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I+  C +G +  A  L+  M    L P+  T + +I   C  GR+E+A      + + G 
Sbjct: 291 IQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGI 350

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             N V Y++++D +C+ G  + A  L+ ++  EG    P+   Y+S+I   C +  + EA
Sbjct: 351 KVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEG--FVPDAHMYSSLIDGLCRENKLLEA 408

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           + +L+ M   G   N V  + LI     E   D    + D++ A G       Y+  +  
Sbjct: 409 ISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRS 468

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             +  R+++AE +  +M+  GV+P+    + +I+     G V + F   +++   G   +
Sbjct: 469 YCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPN 528

Query: 411 VDSDIHSVLLLGLCRKN 427
            +S  ++VLL  L +KN
Sbjct: 529 DES--YTVLLGLLLKKN 543



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 23/286 (8%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M    ++PD + Y   IR +C+ G M  A+ +M  M    + P++ TY ++IKG+ N G
Sbjct: 449 RMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLG 508

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            +  A    K M  +GC  N  +Y+ LL  + +  S                D   + ++
Sbjct: 509 LVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYH--------------DLVADSIS 554

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
              ++        MK    +L+ +  L C+         I+       L+EA   +  + 
Sbjct: 555 LWKIVD-------MKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQ 607

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           +     S   Y+ ++    R K LKEA +    M+     P   +   +I  LC  G   
Sbjct: 608 SANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFH 667

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
               ++ DI    +  + D     +L+ GL +K ++ + ++L  FM
Sbjct: 668 TAKSIFGDILSKEY--NRDEIAWKILIDGLLQKGNTADCSRLLSFM 711


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 149/287 (51%), Gaps = 39/287 (13%)

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           RLA++A+ +LR M    +R D + Y  +IR  C+  ++  A ELM  M    + P+++ Y
Sbjct: 129 RLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVY 188

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            S+++G+C +GR ED   +F  M   G   ++V Y+ L+D +C++G  ++A  ++  M +
Sbjct: 189 SSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVR 248

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    PNVVTY  +I   C +G +KEA+G+L +M   G AP+ VT +TLIKG      +
Sbjct: 249 RG--LEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEM 306

Query: 323 DEAYQLIDKVVAG-----------GSVSSGGC--------------------------YS 345
           DEA  L++++V G            SV  G C                          Y+
Sbjct: 307 DEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYN 366

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            L+  L+R  ++++A +L  +M + G++PD    S++I+  C   QV
Sbjct: 367 LLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQV 413



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 172/365 (47%), Gaps = 7/365 (1%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+ + + +   ++ ++ E+  E   VV   +++     C+  R  +    V  +M E  +
Sbjct: 161 CDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ---GYCKSGRWEDVGK-VFVEMSEKGI 216

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD ++Y  +I   C+ G    A  +M  M    L P+++TY  +I   C  G +++A G
Sbjct: 217 EPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIG 276

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + K M   G A ++V Y+ L+ G+  +  M+ A+ LL EM +      PNVVT+ SVIQ 
Sbjct: 277 VLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQG 336

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G M++A  +   ME  GC  N VT + LI G      + +A +L+D++ + G    
Sbjct: 337 LCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPD 396

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              YS L+    +  ++  AE L S M   G++P+      ++  +C  G +     L+ 
Sbjct: 397 SFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFN 456

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           +++   F   +D   +S ++ G C+      A +L + ++ + +         ++    K
Sbjct: 457 EMDN-NF--PLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAK 513

Query: 461 SGDEE 465
           SGD E
Sbjct: 514 SGDME 518



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 156/313 (49%), Gaps = 10/313 (3%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKM---PEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           +V    V+  LC +    + A  +LR M   P    RP+ + Y  ++R  C       A 
Sbjct: 77  AVSYNTVLTALCRRGH-HDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L++ M    +  D++TY ++I+G C+A  ++ A  L   M   G   N+V YS+LL G 
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G  E   ++  EM ++G    P+VV YT +I   C  G  K+A G++D M   G  P
Sbjct: 196 CKSGRWEDVGKVFVEMSEKG--IEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP 253

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N VT + LI   C EG++ EA  ++ K+   G       Y++L+  L     + EA  L 
Sbjct: 254 NVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLL 313

Query: 365 SKMLASG--VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
            +M+     VKP+ +  + +I+ LC  G++ + F +   +E+ G +  V+   +++L+ G
Sbjct: 314 EEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCM--VNLVTYNLLIGG 371

Query: 423 LCRKNHSVEAAKL 435
           L R +   +A +L
Sbjct: 372 LLRVHKVRKAMEL 384



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 139/274 (50%), Gaps = 10/274 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++ R++Q       V    +E GC+V++    ++     +     +AM ++ +M    L
Sbjct: 338 CDIGRMRQ----AFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGL 393

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD+  Y+ +I+ FC+   +  A++L+  M    + P++  Y+ ++   C  G +E A  
Sbjct: 394 EPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARN 453

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M  +    ++VAYS ++ G C+ G ++ A ELL  +  EG   +P+ VTY+ VI +
Sbjct: 454 LFNEMD-NNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEG--LTPDAVTYSIVINM 510

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           F   G M+ A G+L +M A G  P+     +LI+G+  +G +++  +LI +++       
Sbjct: 511 FAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALD 570

Query: 341 GGCYSSLVVELVRT---KRLKEAEKLFSKMLASG 371
               S+L   LV +   K L ++   FS  ++ G
Sbjct: 571 SKIISTLSTSLVASNEGKALLQSLPDFSAEISKG 604



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 155/350 (44%), Gaps = 44/350 (12%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++     G   +V    V+ N   K     EA+ VL+KM E  + PD + YN +I+   
Sbjct: 242 VMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLS 301

Query: 176 EKGDMIAA----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           +  +M  A    +E+++G  ++   P+++T+ S+I+G C+ GR+  A  +  +M+  GC 
Sbjct: 302 DVLEMDEAMWLLEEMVRGKNIVK--PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCM 359

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            NLV Y+ L+ G+ R+  + +A+EL+ EM   G    P+  TY+ +I+ FC    +  A 
Sbjct: 360 VNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLG--LEPDSFTYSILIKGFCKMWQVDRAE 417

Query: 292 GILDRMEALGCAP----------------------------------NRVTISTLIKGFC 317
            +L  M   G  P                                  + V  ST+I G C
Sbjct: 418 DLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGAC 477

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+L  A +L+  +V  G       YS ++    ++  ++ A  +  +M ASG  PD  
Sbjct: 478 KAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVA 537

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
               +I+     G++ +   L    E I    ++DS I S L   L   N
Sbjct: 538 VFDSLIQGYSTKGEINKVLELIR--EMITKNIALDSKIISTLSTSLVASN 585



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 112/211 (53%), Gaps = 3/211 (1%)

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGD-CSPNVVTYTSVIQIFCGKGMMKEALGI 293
           V+Y+ +L  +CR G  +RA  LL  M  E    C PN V+YT +++  C   +  +A+G+
Sbjct: 78  VSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGL 137

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L  M + G   + VT  TLI+G C    +D+A +L+ ++   G   +   YSSL+    +
Sbjct: 138 LRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCK 197

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           + R ++  K+F +M   G++PD +  + +I  LC  G+  +   + + + + G   +V +
Sbjct: 198 SGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVT 257

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             ++VL+  +C++    EA  + + M +K +
Sbjct: 258 --YNVLINCMCKEGSVKEAIGVLKKMSEKGV 286


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 199/430 (46%), Gaps = 23/430 (5%)

Query: 60  TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM---SRIKQNPSIIIDV 116
           T V++ L   F   +   ++FF WA  +  Y H+   Y    E+   +R        +  
Sbjct: 80  TTVLQTLG--FLRDTSKALQFFNWAQ-EMGYTHTEQSYFSMLEILGRNRHLNTARNFLFS 136

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           +E        +  +    +     +A L  E++ V   M    + P  + +N+++ +  +
Sbjct: 137 IEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLK 196

Query: 177 KGDMIAA----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
           +G    A    DE++   G+    PD  T+  +I+GFC  G ++D   +F  + R GC  
Sbjct: 197 RGRTNMAKKVYDEMLSTYGVT---PDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEP 253

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++V Y+ L+DG+CR G +  A  ++  M K+  D +PNVVTYT++I+ +C K  +++AL 
Sbjct: 254 DVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALA 313

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC-YSSLVVEL 351
           + + M   G   N +T +TLIKG C     ++   +++     G+ S   C +++L+   
Sbjct: 314 VFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCH 373

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
                L +A K+F +M    ++PD    S ++R LC GG   +   L + + +   L S 
Sbjct: 374 CHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSG 433

Query: 412 DS-----DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK----KSG 462
           D        ++ +   LC    + +A K  R ++++       Y   I+ H K    +SG
Sbjct: 434 DGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESG 493

Query: 463 DEELITNLPK 472
            E L+  L K
Sbjct: 494 YELLVLMLRK 503



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 124/278 (44%), Gaps = 8/278 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C K R   +A+ V  +M    L+ + I YN +I+  CE        ++++
Sbjct: 293 VTYTTLIRGYCAK-REIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILE 351

Query: 189 GM-GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           G  G     PD  T+ +++   C+AG L+DA  +F+ M       +   YSAL+  +C+ 
Sbjct: 352 GTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQG 411

Query: 248 GSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G  E+A +LL ++ +      G  C P V  Y  + +  C  G  K+A     ++   G 
Sbjct: 412 GHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRG- 470

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
             +  +  TLI G C EG  +  Y+L+  ++    +     Y SL+  L+   +   A +
Sbjct: 471 TQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQ 530

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              KML S  +P+      ++ +L   G+  E   L +
Sbjct: 531 SLEKMLRSSHRPNSSTFHSILAKLLEQGRTSESASLIQ 568



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 125/300 (41%), Gaps = 42/300 (14%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-------PD 198
           ++A+ V  +M E  ++PD+  Y+ ++R  C+ G    A++L+  +    +        P 
Sbjct: 380 DDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPL 439

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           +  Y  + K  C  G+ + A   F+ + R G   +  +Y  L+ G C+ G+ E   ELL 
Sbjct: 440 VAAYNPIFKYLCETGKTKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYELLV 498

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
            M ++  D  P+  TY S+I           AL  L++M      PN  T  +++     
Sbjct: 499 LMLRK--DFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLE 556

Query: 319 EGNLDEAYQLI----DKVVAGGSVSSGGC------------------------YSSLVVE 350
           +G   E+  LI    DK +      S GC                        YS  + E
Sbjct: 557 QGRTSESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQLVHLLYGKGYSVKMEE 616

Query: 351 LVRT----KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+R     +++ +  KL    L S    D   C+ +I +LC   ++ E F LY  + ++G
Sbjct: 617 LIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEINKLSEAFSLYYKLVEMG 676


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 144/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V  ++ ++ LRP  + +N ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   ++ DA  LF  M  +G   N V ++ L+DG C+ GS++ A+E   EM ++G   
Sbjct: 215 GLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQG--F 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C +G +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFK 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L R  +   AEK+  +ML+ G+KPD    +++I E C
Sbjct: 333 YKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G +  V
Sbjct: 393 KKGDVKMGSKLLKEMQRDGHVPCV 416



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 5/278 (1%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+++ L++G  RLG ++   
Sbjct: 132 YPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGF 191

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M +A  + D M   G  PN VT +TLI 
Sbjct: 192 RLKSAMH--GSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLID 249

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G++D A +   +++  G       Y++L+  L +   LK+A+ L  +M   G+KP
Sbjct: 250 GHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKP 309

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  + +I   C  G +   F   + + K      +D   ++ L+ GLCR+  SV A K
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFKYKKRMIKENI--RLDDVAYTALISGLCREGQSVGAEK 367

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
           + R ML   +         I+    K GD ++ + L K
Sbjct: 368 MLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLK 405



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 2/161 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM   ++M      PD I YN +I   C++GD+  A +L+  M +  L PD ITY ++I 
Sbjct: 260 AMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G LE A    K M +     + VAY+AL+ G+CR G    A ++L EM   G   
Sbjct: 320 GSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVG--L 377

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            P+  TYT +I  FC KG +K    +L  M+  G  P  VT
Sbjct: 378 KPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 3/205 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ N+A  +  +M    L P+ + +  +I   C+ G +  A E  K M   
Sbjct: 212 LINGLCKESKM-NDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQ 270

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ITY ++I G C  G L+ A  L   M   G   + + Y+ L+DG C+ G +E A
Sbjct: 271 GFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +    M KE  +   + V YT++I   C +G    A  +L  M ++G  P+  T + +I
Sbjct: 331 FKYKKRMIKE--NIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMII 388

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSV 338
             FC +G++    +L+ ++   G V
Sbjct: 389 NEFCKKGDVKMGSKLLKEMQRDGHV 413



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 112/238 (47%), Gaps = 4/238 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+  +  +I  +  +G L DA   F++ + H           +L+   +L   +      
Sbjct: 65  DVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFY 124

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ + G   S  +  +  ++  FC +G M+ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 125 KEILECGYPAS--LYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYI 182

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+LDE ++L   +   G       YS L+  L +  ++ +A +LF +M+ +G+ P+G+
Sbjct: 183 RLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGV 242

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +I   C  G +      Y+++ + GF  S D   ++ L+ GLC++    +A  L
Sbjct: 243 TFTTLIDGHCKTGSIDLAMEAYKEMLRQGF--SPDLITYNTLIYGLCKEGDLKQAQDL 298


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 176/354 (49%), Gaps = 4/354 (1%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           ++ ++      +G   S+K    + +   KA     +  V   M    + PD  +++ ++
Sbjct: 145 VVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMV 204

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
             FC  G +  A EL + M  + + P+++TY ++I G C  GRL++A    + M++    
Sbjct: 205 NAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVK 264

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            +LV Y  L++G+ +L   + A  +L EM   G   +PN V Y ++I  +C  G +  AL
Sbjct: 265 PSLVTYGVLINGLVKLERFDEANCILKEMSDRG--YAPNNVVYNTLIDGYCRIGNISTAL 322

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            I D M + G +PN VT ++LI+G+C    ++ A  L+++++ GG V + G ++S++  L
Sbjct: 323 QIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRL 382

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
               R   A     +ML    KP+    ++++  LC  G+  E   L+  + + GF  + 
Sbjct: 383 CLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGF--AA 440

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           ++   + L+ GLC      EAAKL + ML++ + L     + ++    K G  E
Sbjct: 441 NTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVE 494



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 154/312 (49%), Gaps = 5/312 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    +I  LCE A    EA  +L++M E  L  D+I YN +I   C++G +    +L 
Sbjct: 442 TVTSNALIHGLCE-AGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLK 500

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M    + PD+ TY  ++ G CN G++E+A GL+   K++G   +   Y  ++DG C+ 
Sbjct: 501 EEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKA 560

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             +E   +L  EM         N V Y ++I+ +C  G M+EA  + D M + G      
Sbjct: 561 NRVEEGEKLFQEMVTM--KIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSA 618

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S+LI G    G +D A QL+D++   G   +  CY++L+    +  ++ + + +  +M
Sbjct: 619 TYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEM 678

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
             + V P+ +  ++MI   C  G +     L  ++ + G +   D+  ++ L  G C++ 
Sbjct: 679 SINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVP--DAVTYNALTNGFCKEG 736

Query: 428 HSVEAAKLARFM 439
              EA K+   M
Sbjct: 737 KMEEALKVCDLM 748



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 2/208 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA    E   + ++M    +  + ++Y  +IR +CE G+M  A  L   M    +     
Sbjct: 559 KANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSA 618

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY S+I G  N G ++ A  L   M++ G + N+V Y+AL+ G C+LG M +   +L EM
Sbjct: 619 TYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEM 678

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
                +  PN +TYT +I   C  G MK A  +L+ M   G  P+ VT + L  GFC EG
Sbjct: 679 SIN--NVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEG 736

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            ++EA ++ D +  GG       Y++L+
Sbjct: 737 KMEEALKVCDLMSTGGISLDDITYTTLI 764



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 168/392 (42%), Gaps = 76/392 (19%)

Query: 124 GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           G    V +   + N  C   R+ ++A+ + RKM +  + P+ + YNN+I   C+ G +  
Sbjct: 192 GVTPDVYLFSTMVNAFCTGGRV-DDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDE 250

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +  + M    + P ++TY  +I G     R ++A  + K M   G A N V Y+ L+D
Sbjct: 251 AFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLID 310

Query: 243 GICRLGS-----------------------------------MERALELLGEMEKEGGDC 267
           G CR+G+                                   ME A  LL EM   GG  
Sbjct: 311 GYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVI 370

Query: 268 SPNVVTYTSVIQIFCGK-----------------------------------GMMKEALG 292
             N  T+TSVI   C K                                   G   EA+ 
Sbjct: 371 --NQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIE 428

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +  R+   G A N VT + LI G C  G+ +EA +L+ +++  G V     Y++L++   
Sbjct: 429 LWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACC 488

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  +++E  KL  +M+  G++PD    ++++  LC  G++ E   L+ + +K G     D
Sbjct: 489 KEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFP--D 546

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +  + +++ G C+ N   E  KL + M+  +I
Sbjct: 547 AYTYGIMIDGYCKANRVEEGEKLFQEMVTMKI 578



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 153/313 (48%), Gaps = 9/313 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC+  +  +EA+ +  ++ E     +T+  N +I   CE G    A +L+K M   
Sbjct: 413 LVSGLCQNGK-QSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLER 471

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L  D I+Y ++I   C  G++E+   L + M R G   ++  Y+ LL G+C +G +E A
Sbjct: 472 GLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEA 531

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  E +K G    P+  TY  +I  +C    ++E   +   M  +    N V   TLI
Sbjct: 532 GGLWHECKKNGN--FPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLI 589

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           + +C  GN+ EA++L D + + G   +   YSSL+  L     +  A +L  +M   G+ 
Sbjct: 590 RAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLS 649

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVE 431
           P+ +  + +I   C  GQ+ +   + +++     +++V  +   +++++ G C+  +   
Sbjct: 650 PNVVCYTALIGGYCKLGQMHKVDSILQEMS----INNVHPNKITYTIMINGHCKLGNMKA 705

Query: 432 AAKLARFMLKKRI 444
           AAKL   M +K I
Sbjct: 706 AAKLLNEMAQKGI 718



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD   Y  +I  +C+   +   ++L + M  + +  + + Y ++I+ +C  G + +A  L
Sbjct: 545 PDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRL 604

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M+  G       YS+L+ G+  +G ++ A +LL EM KEG   SPNVV YT++I  +
Sbjct: 605 RDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEG--LSPNVVCYTALIGGY 662

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G M +   IL  M      PN++T + +I G C  GN+  A +L++++   G V   
Sbjct: 663 CKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDA 722

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
             Y++L     +  +++EA K+   M   G+  D +  + +I
Sbjct: 723 VTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLI 764



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 116/221 (52%), Gaps = 6/221 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           M +  C+ +R+++   +  ++V    E+  VV   +++     CE   +  EA  +   M
Sbjct: 553 MIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRA---YCENGNM-REAFRLRDDM 608

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               +   +  Y+++I      G + +A++L+  M    L P+++ Y ++I G+C  G++
Sbjct: 609 RSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQM 668

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
                + + M  +    N + Y+ +++G C+LG+M+ A +LL EM ++G    P+ VTY 
Sbjct: 669 HKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKG--IVPDAVTYN 726

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           ++   FC +G M+EAL + D M   G + + +T +TLI G+
Sbjct: 727 ALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGW 767


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 161/305 (52%), Gaps = 12/305 (3%)

Query: 114 IDVVEAYKEE----GCVVSVKMMKVIFN-LCEKA--RLANEAMWVLRKMPEFDLRPDTII 166
            ++V A+ EE    G   S+    ++ +  C++   RLA     V   + ++ LRP  + 
Sbjct: 117 FNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQS---VFDAITKWGLRPSVVS 173

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN ++  +   GD+    +L   M    + PD+ TY  +I G C   +++DA  LF+ M 
Sbjct: 174 YNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEML 233

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G   N V ++ L+DG C+ G ++ A+E+  +M  +     P+++TY ++I   C KG 
Sbjct: 234 VKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQS--LLPDLITYNTLIYGLCKKGA 291

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + +A  ++D M   G  P+++T +TLI G C EG+LD A++   +++          Y++
Sbjct: 292 LNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTA 351

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C  G V +G  L +++++ G
Sbjct: 352 LISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDG 411

Query: 407 FLSSV 411
              SV
Sbjct: 412 HAPSV 416



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 94/180 (52%), Gaps = 3/180 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM V ++M    L PD I YN +I   C+KG +  A +LM 
Sbjct: 242 VTFTTLIDGHCKNGRV-DLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMD 300

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  L PD ITY ++I G C  G L+ A    K M +     + VAY+AL+ G+C+ G
Sbjct: 301 EMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 360

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A +++ EM   G    P+  TYT +I  FC KG + +   +L  M+  G AP+ VT
Sbjct: 361 RSVDAEKMMREMLSFG--LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 110/238 (46%), Gaps = 4/238 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L          
Sbjct: 65  DIYVFSGLITAYLESGFLRDAVECYRLTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAFY 124

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ + G   S  +  +  ++  FC +G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 125 EEILECGYPAS--LYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYI 182

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+L+E ++L   + A G       YS L+  L +  ++ +A +LF +ML  G+ P+G+
Sbjct: 183 RLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGV 242

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLP--DLITYNTLIYGLCKKGALNQAHDL 298


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 145/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++ A+E+   M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYMPSV 416



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + + M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A +  G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMQASGVQPDVYTYSVLINGLCKESKM-DDANELFDEMLDNGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 GRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M KE  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            ++G  P   T + +I  FC +G++    +L+ ++   G + S
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPS 415


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 162/299 (54%), Gaps = 4/299 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + Y ++I   C+ G ++ A +L   M    L PD +TY ++I G+C AG +++A  L
Sbjct: 390 PDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSL 449

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M   G   N+V Y+AL+DG+C+ G ++ A ELL EM ++G    PNV TY ++I   
Sbjct: 450 HNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKG--LQPNVCTYNALINGL 507

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G +++A+ +++ M+  G  P+ +T +T++  +C  G + +A++L+  ++  G   + 
Sbjct: 508 CKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTI 567

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             ++ L+     +  L++ E+L   ML  G+ P+    + ++++ C+   +     +Y+ 
Sbjct: 568 VTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKG 627

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           +   G +   D++ +++L+ G C+  +  EA  L + M++K   L     + +++   K
Sbjct: 628 MHAQGVVP--DTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYK 684



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 193/386 (50%), Gaps = 24/386 (6%)

Query: 63  IEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKE 122
           I    R F   S++G+    W  +  SY   + + +  C++ ++K+  S++I +    + 
Sbjct: 233 IRTAFRVFREYSEVGV---CWNTV--SY---NIILHLLCQLGKVKEAHSLLIQM----EF 280

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD---LRPDTIIYNNVIRLFCEKG 178
            G V  V    VI +  C+  +L      VL+ M E     L+P+   YN++I   C+ G
Sbjct: 281 RGNVPDVVSYSVIVDGYCQVEQLGK----VLKLMEELQRKGLKPNQYTYNSIISFLCKTG 336

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
            ++ A+++++ M    ++PD + Y ++I GF  +G +     LF  MKR     + V Y+
Sbjct: 337 RVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYT 396

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           +++ G+C+ G +  A +L  EM  +G    P+ VTYT++I  +C  G MKEA  + ++M 
Sbjct: 397 SMIHGLCQAGKVVEARKLFSEMLSKG--LKPDEVTYTALIDGYCKAGEMKEAFSLHNQMV 454

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             G  PN VT + L+ G C  G +D A +L+ ++   G   +   Y++L+  L +   ++
Sbjct: 455 EKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIE 514

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
           +A KL  +M  +G  PD +  + ++   C  G++ +   L   +   G   ++ +   +V
Sbjct: 515 QAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVT--FNV 572

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRI 444
           L+ G C      +  +L ++ML K I
Sbjct: 573 LMNGFCMSGMLEDGERLIKWMLDKGI 598



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 122/233 (52%), Gaps = 5/233 (2%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C +  +ANE   +L +M E  L+P+   YN +I   C+ G++  A +LM+ M L   +PD
Sbjct: 475 CGEVDIANE---LLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPD 531

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            ITY +++  +C  G +  A  L ++M   G    +V ++ L++G C  G +E    L+ 
Sbjct: 532 TITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIK 591

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
            M  +G    PN  T+ S+++ +C +  M+  + I   M A G  P+  T + LIKG C 
Sbjct: 592 WMLDKG--IMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCK 649

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
             N+ EA+ L  ++V  G   +   Y+SL+    + K+ +EA KLF +M   G
Sbjct: 650 ARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHG 702



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 139/280 (49%), Gaps = 4/280 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA    EA  +  +M E  L P+ + Y  ++   C+ G++  A+EL+  M    L P++ 
Sbjct: 439 KAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVC 498

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY ++I G C  G +E A  L + M   G   + + Y+ ++D  C++G M +A ELL  M
Sbjct: 499 TYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIM 558

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G    P +VT+  ++  FC  GM+++   ++  M   G  PN  T ++L+K +C+  
Sbjct: 559 LDKG--LQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRN 616

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           N+    ++   + A G V     Y+ L+    + + +KEA  L  +M+  G      + +
Sbjct: 617 NMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYN 676

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +I+      +  E   L+E++   GF++  + +I+ + +
Sbjct: 677 SLIKGFYKRKKFEEARKLFEEMRTHGFIA--EKEIYDIFV 714



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 46/98 (46%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PDT  YN +I+  C+  +M  A  L K M          +Y S+IKGF    + E+A  L
Sbjct: 635 PDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKL 694

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           F+ M+ HG  A    Y   +D     G+ E  LEL  E
Sbjct: 695 FEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDE 732


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 145/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  + D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYVPSV 416



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM +  +M    L PD I YN +I   C+KGD+  A +L   M +  L PD ITY
Sbjct: 256 RV-DLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 181/382 (47%), Gaps = 24/382 (6%)

Query: 78  IRFFIWAALQSSYRHSS----FMYNRACEMSRIKQNPSIIIDVVEAYKEE---------- 123
           I+FF W + +  Y+H+      M NR            I I +++A + E          
Sbjct: 134 IQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFL 193

Query: 124 ------GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
                 G   S+     +     K  +   A  + ++M    ++P  + +N +I +  +K
Sbjct: 194 NEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKK 253

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A+ ++  +   DL PD+ TY S+I G C    L+ A G+F  M + GC  N V Y
Sbjct: 254 GKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTY 313

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           S L++G+C  G ++ AL++L EM ++G    P V TYT  I   C     +EA+ ++ RM
Sbjct: 314 STLINGLCNEGRVDEALDMLEEMIEKG--IEPTVYTYTLPITALCAIEHEEEAIELVARM 371

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           +  GC PN  T + LI G    G L+ A  L  K++  G V +   Y++L+ EL    R 
Sbjct: 372 KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRF 431

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
             A K+F  M   G   +    + +I+ LCLGG + +   L+E + K+G L +V +  ++
Sbjct: 432 STALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVT--YN 489

Query: 418 VLLLGLCRKNHSVEAAKLARFM 439
            L+ G   K +   AA+L   M
Sbjct: 490 TLINGYLTKGNVNNAARLLDLM 511



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 159/327 (48%), Gaps = 4/327 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +V   K+ GC  +V+    + +   +      A+ +  KM +  L P+T+ YN +I   C
Sbjct: 367 LVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELC 426

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G    A ++   M       +  TY  +IKG C  G +E A  LF+ M + G    +V
Sbjct: 427 VGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 486

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L++G    G++  A  LL  M++ G  C P+  TY  ++  F   G ++ A     
Sbjct: 487 TYNTLINGYLTKGNVNNAARLLDLMKENG--CEPDEWTYNELVSGFSKWGKLESASFYFQ 544

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   G  PN V+ +TLI G   +G +D A  L++++   G   +   Y++++  L +  
Sbjct: 545 EMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKEN 604

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R  EAEK+  KM   G+ P+ +  + +I  LC  G+    F ++ D+EK   L ++ +  
Sbjct: 605 RFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT-- 662

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +S L+ GLC++  + EA  L + M +K
Sbjct: 663 YSSLIYGLCQEGKADEAEILLKEMERK 689



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 174/373 (46%), Gaps = 28/373 (7%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +EG V +      + N LC   R +  A+ +   M       +T  YN +I+  C  GD+
Sbjct: 408 KEGLVPNTVTYNALINELCVGGRFST-ALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDI 466

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L + M  +   P ++TY ++I G+   G + +A  L  +MK +GC  +   Y+ L
Sbjct: 467 EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 526

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G  + G +E A     EM + G   +PN V+YT++I      G +  AL +L+RME +
Sbjct: 527 VSGFSKWGKLESASFYFQEMVECG--LNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEM 584

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GC PN  + + +I G   E    EA ++ DK+   G + +   Y++L+  L R  R + A
Sbjct: 585 GCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFA 644

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG-------FLSSVDS 413
            K+F  M      P+    S +I  LC  G+  E   L +++E+ G       F S +D 
Sbjct: 645 FKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDG 704

Query: 414 DI------HSVLLLGL-----CRKNHSVEAAKLAR-----FMLKKRIWLQGPYVDKIVEH 457
            +      H+ LLL       C+ N+   +  L        +L++++ +Q   V     H
Sbjct: 705 FVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPH 764

Query: 458 LKKSGDEELITNL 470
            +K  + E+++NL
Sbjct: 765 -EKDVNFEIVSNL 776



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 158/360 (43%), Gaps = 38/360 (10%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           I + ++E  +E GC  +V+    + N   K    +EA  +  KM E  L P+ I Y  +I
Sbjct: 573 IALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLI 632

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
              C  G    A ++   M      P++ TY S+I G C  G+ ++A  L K M+R G A
Sbjct: 633 DGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLA 692

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            + V +++L+DG   LG ++ A  LL  M   G  C PN  TY+ ++     KG+ KE L
Sbjct: 693 PDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVG--CKPNYRTYSVLL-----KGLQKECL 745

Query: 292 -----------------------------GILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
                                         +L RM  +GC P   T STL+ G C +G  
Sbjct: 746 LLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRF 805

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            EA QL+  +   G       Y SL++   +   +  A K+F  + A G +        +
Sbjct: 806 YEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRAL 865

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           I  LC  GQV E   L++++ +  +  + D  + +VL+ GL ++       KL   M  K
Sbjct: 866 ICALCKAGQVEEAQALFDNMLEKEW--NADEIVWTVLVDGLLKEGELDLCMKLLHIMESK 923



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 39/262 (14%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +E A  L+K M   G   +L+ ++ L++ + + G +  A  +L ++ +   D SP+V TY
Sbjct: 221 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQY--DLSPDVFTY 278

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           TS+I   C    +  A G+ DRM   GC PN VT STLI G C EG +DEA  ++++++ 
Sbjct: 279 TSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 338

Query: 335 GG-----------------------------SVSSGGC------YSSLVVELVRTKRLKE 359
            G                              +   GC      Y++L+  L R  +L+ 
Sbjct: 339 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 398

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A  L+ KML  G+ P+ +  + +I ELC+GG+      ++  +E  G L+  ++  ++ +
Sbjct: 399 AIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA--NTQTYNEI 456

Query: 420 LLGLCRKNHSVEAAKLARFMLK 441
           + GLC      +A  L   MLK
Sbjct: 457 IKGLCLGGDIEKAMVLFEKMLK 478



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 2/182 (1%)

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L+  M  I   P + TY +++ G C  GR  +A  L K MK  G   +   Y +LL   C
Sbjct: 776 LLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHC 835

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           +   ++ AL++   +E +G     ++  Y ++I   C  G ++EA  + D M       +
Sbjct: 836 KNLEVDHALKIFHSIEAKGFQLHLSI--YRALICALCKAGQVEEAQALFDNMLEKEWNAD 893

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            +  + L+ G   EG LD   +L+  + +     +   Y  L  EL R  +  E+E L  
Sbjct: 894 EIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLAD 953

Query: 366 KM 367
           K+
Sbjct: 954 KL 955



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 94/193 (48%), Gaps = 4/193 (2%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           N  I+ +++    E GC  ++     + + LC K R   EA  +++ M E    PD  IY
Sbjct: 769 NFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFY-EAEQLVKDMKERGFCPDREIY 827

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
            +++   C+  ++  A ++   +        +  Y ++I   C AG++E+A  LF  M  
Sbjct: 828 YSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLE 887

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
               A+ + ++ L+DG+ + G ++  ++LL  ME +  + +PN+ TY  + +     G  
Sbjct: 888 KEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESK--NFTPNIQTYVILGRELSRIGKS 945

Query: 288 KEALGILDRMEAL 300
            E+  + D+++ L
Sbjct: 946 IESEPLADKLKVL 958


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 159/324 (49%), Gaps = 41/324 (12%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E    PD + Y+ +I   C+ G +  A E+++ M    + PD+ TY  ++   C AG+
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +++A  LF  M   GC+AN VAY+AL++G+C+  ++ERA +LL EM  +G +  P+ +TY
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYE--PDNITY 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALG--------------------------------- 301
            +++   C  G + EA    D M + G                                 
Sbjct: 119 NTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDM 178

Query: 302 ----CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
                AP+ +T +TLI GFC     DEA +L   V+A G +     Y+S+++ L R   +
Sbjct: 179 ADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNM 238

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
            EAE++F KM+ SG  P+G   S+++   C  G +     LYE++ +  F  S D  + +
Sbjct: 239 DEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRF--SPDVLLCN 296

Query: 418 VLLLGLCRKNHSVEAAKLARFMLK 441
            ++  LC+     +A K+   M K
Sbjct: 297 AVIDMLCKAKKVDDAHKVLEEMSK 320



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 165/327 (50%), Gaps = 2/327 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++VE   E+G    V    +I +   +A   +EA  +  KM E     +T+ YN +I  
Sbjct: 30  LEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALING 89

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C+  ++  A +L++ M      PD ITY +++ G C  G++ +A   F  M   G + +
Sbjct: 90  LCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPD 149

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +VAY+ LLD + + G +  A  L   M+      +P+++TY ++I  FC      EA+ +
Sbjct: 150 VVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKL 209

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              + A G  P+ VT ++++ G   + N+DEA ++  K+V  G   +G  YS ++    R
Sbjct: 210 FKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCR 269

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
              +    +L+ +M      PD L C+ +I  LC   +V +   + E++ KIG +  V +
Sbjct: 270 VGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVT 329

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFML 440
             +++LL GLC+ N   +A +L   M+
Sbjct: 330 --YNILLDGLCKTNLVDKAHELFSTMV 354



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 152/330 (46%), Gaps = 42/330 (12%)

Query: 150 WVLRK---MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           W L K   M +  + PD I YN +I  FC       A +L K +      PD +TY S++
Sbjct: 170 WGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSIL 229

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G      +++A  +FK M   GCA N   YS +L G CR+G+M R LEL  EM ++   
Sbjct: 230 LGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKR-- 287

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            SP+V+   +VI + C    + +A  +L+ M  +G  P+ VT + L+ G C    +D+A+
Sbjct: 288 FSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAH 347

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA----------------- 369
           +L   +V  G       YS ++  L +T ++ +A  LF +M+                  
Sbjct: 348 ELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGL 407

Query: 370 ------------------SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
                               V PDG+ C+ ++  LC   +  E   L++ + + G ++ V
Sbjct: 408 CKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADV 467

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
               H+++L GLCR+    +A    + M+K
Sbjct: 468 LP--HNIVLAGLCREGKLAQALLFFKSMVK 495



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 147/296 (49%), Gaps = 3/296 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    ++  L  K+ + +EA  + +KM +    P+   Y+ V+   C  G+M    EL 
Sbjct: 222 TVTYNSILLGLARKSNM-DEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELY 280

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M      PD++   ++I   C A +++DA  + + M + G   ++V Y+ LLDG+C+ 
Sbjct: 281 EEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKT 340

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             +++A EL   M   G  C+P++V+Y+ V+   C    + +A  + DRM      P+ V
Sbjct: 341 NLVDKAHELFSTMVDNG--CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVV 398

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + L+ G C  G LDEA  L+D +     +  G   ++L+  L R KR  EA +LF  M
Sbjct: 399 TFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYM 458

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           +  G   D L  ++++  LC  G++ +    ++ + K     S D   ++ L+  L
Sbjct: 459 VEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNAL 514



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 152/304 (50%), Gaps = 8/304 (2%)

Query: 143 RLANEA--MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           R+ N A  + +  +M E    PD ++ N VI + C+   +  A ++++ M  I   PD++
Sbjct: 269 RVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVV 328

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  ++ G C    ++ A  LF  M  +GCA ++V+YS +L+G+C+   +  A  L   M
Sbjct: 329 TYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRM 388

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            +      P+VVT+  ++   C  G + EA  +LD M      P+ VT +TL+ G C + 
Sbjct: 389 IER--KLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDK 446

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG--VKPDGLA 378
             DEA +L   +V  G+V+    ++ ++  L R  +L +A   F  M+ S     PD + 
Sbjct: 447 RTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVT 506

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            + ++  L   G+V +    ++ +   G   + D   ++ L+ GL ++   ++A +L + 
Sbjct: 507 YTTLVNALIEAGRVDQAVDYFQQMTGSG--CAPDYVAYNTLMNGLRKQGRHIQADRLTQA 564

Query: 439 MLKK 442
           M +K
Sbjct: 565 MKEK 568



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 119/218 (54%), Gaps = 2/218 (0%)

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   G   ++V YS ++ G+C+ G +  ALE++ EM ++G   +P+V TYT ++   C  
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKG--VNPDVATYTIIVDRLCRA 58

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + EA  +  +M   GC+ N V  + LI G C + N++ AY+L++++ + G       Y
Sbjct: 59  GKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITY 118

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++++  L R  ++ EA++ F  M + G  PD +A + ++  L   G+V E + L++ ++ 
Sbjct: 119 NTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDM 178

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
                + D   ++ L+ G CR   + EA KL + ++ K
Sbjct: 179 ADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAK 216



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 112/219 (51%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           + GC   +    V+ N   K    ++A  +  +M E  L PD + +N ++   C+ G + 
Sbjct: 355 DNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLD 414

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L+  M   ++ PD +T  +++ G C   R ++A  LF+ M   G  A+++ ++ +L
Sbjct: 415 EAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVL 474

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G+CR G + +AL     M K  G+ SP+VVTYT+++      G + +A+    +M   G
Sbjct: 475 AGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSG 534

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           CAP+ V  +TL+ G   +G   +A +L   +   G +S 
Sbjct: 535 CAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 4/262 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V+E   + G V  V    ++ +   K  L ++A  +   M +    PD + Y+ V+   C
Sbjct: 314 VLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLC 373

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +   +  A  L   M    L PD++T+  ++ G C AG+L++A  L  VM  H    + V
Sbjct: 374 KTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGV 433

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
             + L+ G+CR    + A+ L   M ++G     +V+ +  V+   C +G + +AL    
Sbjct: 434 TCTTLMHGLCRDKRTDEAVRLFQYMVEKG--TVADVLPHNIVLAGLCREGKLAQALLFFK 491

Query: 296 RM-EALG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
            M ++ G  +P+ VT +TL+      G +D+A     ++   G       Y++L+  L +
Sbjct: 492 SMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRK 551

Query: 354 TKRLKEAEKLFSKMLASGVKPD 375
             R  +A++L   M   G   D
Sbjct: 552 QGRHIQADRLTQAMKEKGFLSD 573


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 172/370 (46%), Gaps = 39/370 (10%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           ++ Q    +I + +  +  G    +  + ++ +     +  + A  V  KM +  L+PD 
Sbjct: 106 KMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDA 165

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + +N +I   C+ G    A E           P + TY ++I G C  G    A GLFK 
Sbjct: 166 VTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKK 225

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ----- 279
           M+  GC  N+V Y+ L+D +C+   +  AL++   M+ +    SP++ TY S+IQ     
Sbjct: 226 MEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAK--RISPDIFTYNSLIQGLCNF 283

Query: 280 ---------------------IF---------CGKGMMKEALGILDRMEALGCAPNRVTI 309
                                IF         C +G + EA G+   M  +G  P+ VT 
Sbjct: 284 RRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTY 343

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           S+L+ G+ +   + EA +L D ++  G       Y+ L+    + KR+ EA++LF++M+ 
Sbjct: 344 SSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIH 403

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            G+ PD +  + +I  LC  G++ E   L++++   G L   D   +S+LL G C++ + 
Sbjct: 404 QGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLP--DLFTYSMLLDGFCKEGYL 461

Query: 430 VEAAKLARFM 439
            +A +L R M
Sbjct: 462 GKAFRLFRVM 471



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 155/319 (48%), Gaps = 4/319 (1%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +E GC  +V    ++ +   K +L NEA+ +   M    + PD   YN++I+  C     
Sbjct: 227 EEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRW 286

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L+  M  +++ P+I T+  ++   C  G++ +A G+FK M   G   ++V YS+L
Sbjct: 287 KEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSL 346

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G      +  A +L   M  +G  C P+  +Y  +I+ +C    + EA  + + M   
Sbjct: 347 MYGYSLRMEIVEARKLFDAMITKG--CKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQ 404

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P+ V  +TLI G C  G L EA  L   + + G++     YS L+    +   L +A
Sbjct: 405 GLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKA 464

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +LF  M ++ +KPD    +++I  +C  G + +   L+ ++   G L +V   I++ ++
Sbjct: 465 FRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNV--QIYTTII 522

Query: 421 LGLCRKNHSVEAAKLARFM 439
             LC++    EA +  R M
Sbjct: 523 NNLCKEGLLDEALEAFRNM 541



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 145/293 (49%), Gaps = 4/293 (1%)

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R   EA  +L +M   ++ P+   +N ++   C++G +  A  + K M  + + PD++TY
Sbjct: 284 RRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTY 343

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            S++ G+     + +A  LF  M   GC  +  +Y+ L+ G C+   ++ A +L  EM  
Sbjct: 344 SSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIH 403

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
           +G   +P+ V Y ++I   C  G ++EA  +   M + G  P+  T S L+ GFC EG L
Sbjct: 404 QG--LTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYL 461

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            +A++L   + +         Y+ L+  + +   LK+A KLFS++   G+ P+    + +
Sbjct: 462 GKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTI 521

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           I  LC  G + E    + ++E  G     D   ++V++ G  +      AA+L
Sbjct: 522 INNLCKEGLLDEALEAFRNMEGDG--CPPDEFSYNVIIRGFLQYKDESRAAQL 572



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 140/283 (49%), Gaps = 20/283 (7%)

Query: 126 VVSVKMMKVIFN-------LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
           + S+ +M  IF        +C++ +++ EA  V + M E  + PD + Y++++  +  + 
Sbjct: 296 MTSLNIMPNIFTFNVLVDAICKEGKVS-EAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRM 354

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
           +++ A +L   M      PD  +Y  +IKG+C A R+++A  LF  M   G   + V Y+
Sbjct: 355 EIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYN 414

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            L+ G+C+LG +  A +L   M   G    P++ TY+ ++  FC +G + +A  +   M+
Sbjct: 415 TLIHGLCQLGRLREAQDLFKNMHSNGN--LPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQ 472

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           +    P+    + LI   C  GNL +A +L  ++   G + +   Y++++  L +   L 
Sbjct: 473 STYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLD 532

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
           EA + F  M   G  PD  + +V+IR          GF  Y+D
Sbjct: 533 EALEAFRNMEGDGCPPDEFSYNVIIR----------GFLQYKD 565



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 139/301 (46%), Gaps = 17/301 (5%)

Query: 45  NIEKTLATVKAKLDSTCV---IEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRAC 101
           NI   + T    +D+ C    +      F + ++MG+             +SS MY  + 
Sbjct: 300 NIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVE-------PDVVTYSSLMYGYSL 352

Query: 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR 161
            M  ++        + +A   +GC        ++     KA+  +EA  +  +M    L 
Sbjct: 353 RMEIVEARK-----LFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLT 407

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + YN +I   C+ G +  A +L K M      PD+ TY  ++ GFC  G L  A  L
Sbjct: 408 PDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRL 467

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F+VM+      ++  Y+ L+D +C+ G+++ A +L  E+  +G    PNV  YT++I   
Sbjct: 468 FRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQG--LLPNVQIYTTIINNL 525

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C +G++ EAL     ME  GC P+  + + +I+GF    +   A QLI ++   G V+  
Sbjct: 526 CKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEA 585

Query: 342 G 342
           G
Sbjct: 586 G 586



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 142/290 (48%), Gaps = 4/290 (1%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           ++M    L PD    + +I  F     +  A  +   M  + L PD +T+ ++I G C  
Sbjct: 119 KQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKV 178

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G+   A   F   +  GC   +  Y+ +++G+C++G    A  L  +ME+ G  C PNVV
Sbjct: 179 GKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAG--CQPNVV 236

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TY  +I   C   ++ EAL I   M+A   +P+  T ++LI+G C      EA  L++++
Sbjct: 237 TYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEM 296

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            +   + +   ++ LV  + +  ++ EA+ +F  M   GV+PD +  S ++    L  ++
Sbjct: 297 TSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEI 356

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +E   L++ +   G     D+  +++L+ G C+     EA +L   M+ +
Sbjct: 357 VEARKLFDAMITKG--CKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQ 404



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 98/211 (46%), Gaps = 2/211 (0%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD   YN +I+ +C+   +  A +L   M    L PD + Y ++I G C  GRL +A  
Sbjct: 372 KPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQD 431

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LFK M  +G   +L  YS LLDG C+ G + +A  L   M+       P++  Y  +I  
Sbjct: 432 LFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTY--LKPDIAMYNILIDA 489

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +K+A  +   +   G  PN    +T+I   C EG LDEA +    +   G    
Sbjct: 490 MCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPD 549

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
              Y+ ++   ++ K    A +L  +M   G
Sbjct: 550 EFSYNVIIRGFLQYKDESRAAQLIGEMRDRG 580


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 169/358 (47%), Gaps = 46/358 (12%)

Query: 95  FMYN----RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150
           F YN      CE  R+ +   ++ D + AY     V    +++    LC+K+ +  EAM 
Sbjct: 223 FTYNIWIRGLCEAGRLPEAVRLV-DGMRAYAVPDVVTYNTLIR---GLCKKS-MPQEAMH 277

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
            LR+M      PD   YN +I  +C+   +  A EL+K        PD +TY S+I G C
Sbjct: 278 YLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLC 337

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G +E A  LF   +  G   ++V Y++L+ G+C  G +  AL+++ EM +EG  C P+
Sbjct: 338 AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEG--CHPD 395

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY  VI   C  G + +A  +++     G  P+  T +TLI G+C    LD A QL++
Sbjct: 396 IQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVE 455

Query: 331 KVVAGG---------SVSSGGC--------------------------YSSLVVELVRTK 355
           ++   G         SV +G C                          Y+ L+    R+ 
Sbjct: 456 RMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSN 515

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           +++EA K+  KM   G+ PD ++ + +I   C  G +   + L++ +E+ G+ ++ D+
Sbjct: 516 KMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADT 573



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 138/267 (51%), Gaps = 2/267 (0%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
            A+ V+ +M E    PD   YN VI   C+ G++  A  +M    +    PD+ T+ ++I
Sbjct: 379 HALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLI 438

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C   +L+ A  L + M  +G A + + Y+++L+G+C+ G +    E   EM  +G  
Sbjct: 439 DGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG-- 496

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PN +TY  +I+ FC    M+EA  ++ +M   G  P+ V+ +TLI GFC  G+L+ AY
Sbjct: 497 CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAY 556

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L  K+   G  ++   +++L+        +  AEK+F +ML+ G + D     V+I   
Sbjct: 557 LLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGS 616

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           C    V   +    ++ K GF+ S+ +
Sbjct: 617 CKTANVDRAYMHLVEMIKKGFIPSMST 643



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 153/323 (47%), Gaps = 24/323 (7%)

Query: 116 VVEAYKEEGCVVSVKMMKV------------IFNLCEKARLANEAMWVLRKMPEFDLRPD 163
           V  AY ++   V V+M+              + + C  AR  + A+ +LR +P       
Sbjct: 97  VDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTAR-PHIALRLLRALP----HRG 151

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR-LEDACGLF 222
            + Y  V+      G    A +L   M    ++P++  +  ++   C  G  LE    L 
Sbjct: 152 AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLG 211

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           KV++R G + NL  Y+  + G+C  G +  A+ L+  M        P+VVTY ++I+  C
Sbjct: 212 KVIQR-GMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA---VPDVVTYNTLIRGLC 267

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            K M +EA+  L RM   GC P+  T +T+I G+C    + EA +L+   V  G V    
Sbjct: 268 KKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQV 327

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y SL+  L     ++ A +LF++  A G+KPD +  + +++ LCL G +L    +  ++
Sbjct: 328 TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEM 387

Query: 403 EKIGFLSSVDSDIHSVLLLGLCR 425
            + G     D   +++++ GLC+
Sbjct: 388 AEEG--CHPDIQTYNIVINGLCK 408



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 105/262 (40%), Gaps = 37/262 (14%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + +VE   E G          + N   KA   NE     ++M      P+ I YN +I  
Sbjct: 451 LQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIEN 510

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC    M  A +++  M    L+PD +++ ++I GFC  G LE A  LF+ ++  G    
Sbjct: 511 FCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG---- 566

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              YSA  D                              T+ ++I  F GK  M  A  I
Sbjct: 567 ---YSATAD------------------------------TFNTLIGAFSGKLNMHMAEKI 593

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
            D M + G   +  T   LI G C   N+D AY  + +++  G + S   +  ++  L  
Sbjct: 594 FDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTV 653

Query: 354 TKRLKEAEKLFSKMLASGVKPD 375
             R+ +A  +   M+  GV P+
Sbjct: 654 NHRVFQAVGIIHIMVKIGVVPE 675



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 9/241 (3%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           YV+ I+ +  AGRL DA   F+ M    C     AY+A++D +      ++A ++   M 
Sbjct: 54  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 113

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G   SP++ T+T  ++ FC       AL +L  +   G     V   T++ G    G+
Sbjct: 114 AAG--VSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGA----VAYCTVVCGLYAHGH 167

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
             +A QL D+++      +   ++ ++  L +   + EA  L  K++  G+  +    ++
Sbjct: 168 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 227

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            IR LC  G++ E   L + +        V    ++ L+ GLC+K+   EA    R M+ 
Sbjct: 228 WIRGLCEAGRLPEAVRLVDGMRAYAVPDVV---TYNTLIRGLCKKSMPQEAMHYLRRMMN 284

Query: 442 K 442
           +
Sbjct: 285 Q 285



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 6/151 (3%)

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I+ +   G L +A    +++       +   Y++++  LV      +A K++ +MLA+GV
Sbjct: 58  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 117

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD    ++ +R  CL  +      L   +   G ++      +  ++ GL    H+ +A
Sbjct: 118 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVA------YCTVVCGLYAHGHTHDA 171

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            +L   ML   ++      +K++  L K GD
Sbjct: 172 RQLFDQMLHTHVFPNLAAFNKVLHALCKRGD 202


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 169/325 (52%), Gaps = 8/325 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I+VV+   E GCV  +     I + LC+  R+ ++A+ +L ++  +  +PDTI Y  V++
Sbjct: 411 IEVVDHMSEHGCVADIVTYSSILDGLCDVGRV-DDAVELLSRLKSYGCKPDTIAYTTVLK 469

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C       A+ELM  M   D  PD +T+ +++   C  G ++ A  + + M  +GC+ 
Sbjct: 470 GLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSP 529

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++V Y+ ++DG+C    ++ A+ELL +++  G  C P++VT+ ++++  CG    ++A  
Sbjct: 530 DIVTYNCIIDGLCNESCIDDAMELLSDLQSCG--CKPDIVTFNTLLKGLCGVDRWEDAEQ 587

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           ++  M    C P+ +T +T+I   C +G L +A + +  +   G V +   YS +V  L+
Sbjct: 588 LMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALL 647

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  + + A +L S M  +   PD +  + +I  L   G++ E   L   +   G     D
Sbjct: 648 KAGKAQAALELLSGM--TNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCP--D 703

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLAR 437
           +  +  L  G+CR++ +  A ++ R
Sbjct: 704 TTTYRSLAYGVCREDGTDRAVRMLR 728



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 196/414 (47%), Gaps = 43/414 (10%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           S + +  C+ S  +Q     + +++  + +GC   +    V+ N +C +  + +EA+ +L
Sbjct: 290 SILLDATCKESGYRQ----AMALLDEMRAKGCEPDIVTYNVLINAMCNEGDV-DEALNIL 344

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
             +P    +PD + Y  V++  C        +EL+  M   +  PD +T+ +++   C  
Sbjct: 345 SNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQ 404

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-------- 264
           G ++ A  +   M  HGC A++V YS++LDG+C +G ++ A+ELL  ++  G        
Sbjct: 405 GLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 464

Query: 265 -------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
                                     DC P+ VT+ +V+   C KG++  A+ ++++M  
Sbjct: 465 TTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSE 524

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            GC+P+ VT + +I G C E  +D+A +L+  + + G       +++L+  L    R ++
Sbjct: 525 NGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWED 584

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           AE+L + M+ S   PD L  + +I  LC  G + +     + + + G +   +S  +S++
Sbjct: 585 AEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVP--NSSTYSIV 642

Query: 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473
           +  L +   +  A +L   M      L     + ++ +L K+G  E   +L ++
Sbjct: 643 VDALLKAGKAQAALELLSGMTNGTPDLI--TYNTVISNLTKAGKMEEALDLLRV 694



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 135/276 (48%), Gaps = 8/276 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V  A      VV+   M  +   C   R+  +A  ++  MP     PDT  +N +IR  C
Sbjct: 209 VFAALGPSATVVTYNTM--VNGYCRAGRI-EDARRLINGMP---FPPDTFTFNPLIRALC 262

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            +G +  A  +   M      P ++TY  ++   C       A  L   M+  GC  ++V
Sbjct: 263 VRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIV 322

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L++ +C  G ++ AL +L  +   G  C P+ VTYT V++  CG    KE   +L 
Sbjct: 323 TYNVLINAMCNEGDVDEALNILSNLPSHG--CKPDAVTYTPVLKSLCGSERWKEVEELLA 380

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M +  CAP+ VT +T++   C +G +D A +++D +   G V+    YSS++  L    
Sbjct: 381 EMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVG 440

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           R+ +A +L S++ + G KPD +A + +++ LC   Q
Sbjct: 441 RVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQ 476



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 172/357 (48%), Gaps = 12/357 (3%)

Query: 90  YRHSSFMYN---RA-CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           +   +F +N   RA C   RI    ++  D++      GC  SV    ++ +   K    
Sbjct: 247 FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLH----RGCSPSVVTYSILLDATCKESGY 302

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            +AM +L +M      PD + YN +I   C +GD+  A  ++  +      PD +TY  +
Sbjct: 303 RQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPV 362

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +K  C + R ++   L   M  + CA + V ++ ++  +C+ G ++RA+E++  M + G 
Sbjct: 363 LKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHG- 421

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C  ++VTY+S++   C  G + +A+ +L R+++ GC P+ +  +T++KG C     + A
Sbjct: 422 -CVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERA 480

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L+ +++          ++++V  L +   +  A ++  +M  +G  PD +  + +I  
Sbjct: 481 EELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDG 540

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC    + +   L  D++  G     D    + LL GLC  +   +A +L   M++ 
Sbjct: 541 LCNESCIDDAMELLSDLQSCG--CKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRS 595



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 6/296 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I VVE   E GC   +     I + LC ++ + ++AM +L  +     +PD + +N +++
Sbjct: 516 IRVVEQMSENGCSPDIVTYNCIIDGLCNESCI-DDAMELLSDLQSCGCKPDIVTFNTLLK 574

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C       A++LM  M   +  PD +T+ ++I   C  G L  A    K+M  +GC  
Sbjct: 575 GLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVP 634

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   YS ++D + + G  + ALELL  M       +P+++TY +VI      G M+EAL 
Sbjct: 635 NSSTYSIVVDALLKAGKAQAALELLSGMTNG----TPDLITYNTVISNLTKAGKMEEALD 690

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L  M + G  P+  T  +L  G C E   D A +++ +V   G       Y+ +++   
Sbjct: 691 LLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFC 750

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
           R +R   A   F+ M++SG  PD     +++  L  GG + E   L   +  +G L
Sbjct: 751 RDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGVL 806



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 140/274 (51%), Gaps = 10/274 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  +  N +I+  C  G +  A+ +   +G       ++TY +M+ G+C AGR+EDA  L
Sbjct: 185 PPVVPCNILIKRLCSDGRVSDAERVFAALGP---SATVVTYNTMVNGYCRAGRIEDARRL 241

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M       +   ++ L+  +C  G +  AL +  +M   G  CSP+VVTY+ ++   
Sbjct: 242 INGMPF---PPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRG--CSPSVVTYSILLDAT 296

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C +   ++A+ +LD M A GC P+ VT + LI   C EG++DEA  ++  + + G     
Sbjct: 297 CKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDA 356

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y+ ++  L  ++R KE E+L ++M ++   PD +  + ++  LC  G V     + + 
Sbjct: 357 VTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDH 416

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           + + G ++ + +  +S +L GLC      +A +L
Sbjct: 417 MSEHGCVADIVT--YSSILDGLCDVGRVDDAVEL 448


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 150/285 (52%), Gaps = 4/285 (1%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E ++ PD+  Y  +I    + G +  A +L + +    + P  + Y S+I G C A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            +DA  LF  M R GC  + V Y+ ++D  C+ G +E A +L+ +M ++G    P+VVTY
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGH--VPDVVTY 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            +V+   C  G ++EAL + + ME LGC PNR + +T+I G C +  +D+A Q+  ++ A
Sbjct: 119 NTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEA 178

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                    Y  L+  L +  +L EA KLF +ML SG+ P  +  +V+I  +CL   + E
Sbjct: 179 RDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDE 238

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
              L++ +   G   S  +   ++L+   C++    EA +L + M
Sbjct: 239 ALELFKSMRSKGCRPSRFT--FNILIDAHCKRGKMDEAFRLLKRM 281



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 154/315 (48%), Gaps = 7/315 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++ +   KA   NEA  + R+M +  + P  + YN VI   C    +  A EL K M   
Sbjct: 190 ILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSK 249

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P   T+  +I   C  G++++A  L K M   G   ++V YS L+ G+C +  ++ A
Sbjct: 250 GCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDA 309

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL +M K    C P VVT  ++I   C  G +KEA  +LD M + G +P+ VT +TL+
Sbjct: 310 RHLLEDMVKR--QCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G  + A +L+  +VA G   +   Y++LV  L +  RL EA  +F++M +SG  
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCA 427

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    + +I   C  GQV  G  L+ ++   G   S D  ++  L   LC+   S  A 
Sbjct: 428 PNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI--SPDHVVYGTLAAELCKSGRSARAL 485

Query: 434 KL---ARFMLKKRIW 445
           ++    R  L+   W
Sbjct: 486 EILREGRESLRSEAW 500



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 165/349 (47%), Gaps = 17/349 (4%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-------VIFN-----LCEKAR 143
           M  R C  S +  N  I         EE C +  KM++       V +N     LC+  R
Sbjct: 71  MNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGR 130

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           +  EA+ +  +M      P+   +N +I   C++  +  A ++   M   D+ PD  +Y 
Sbjct: 131 V-EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYG 189

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            +I G   AG+L +A  LF+ M   G   + V Y+ ++ G+C   +++ ALEL   M  +
Sbjct: 190 ILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSK 249

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G  C P+  T+  +I   C +G M EA  +L RM   G  P+ VT STLI G C    +D
Sbjct: 250 G--CRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +A  L++ +V      +    ++L+  L +  R+KEA ++   M++SG  PD +  + ++
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
              C  GQ      L  D+   G   +V +  ++ L+ GLC+ N   EA
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVT--YTALVSGLCKANRLPEA 414



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 150/310 (48%), Gaps = 4/310 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++ +   KA   N+A  + +K+    + P T+ Y ++I   C       A EL   M   
Sbjct: 15  ILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRR 74

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P  +TY  +I   C  G LE+AC L K M   G   ++V Y+ ++DG+C+ G +E A
Sbjct: 75  GCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEA 134

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L L  EME+ G  C+PN  ++ ++I   C +  + +A  +   MEA    P+  +   LI
Sbjct: 135 LLLFNEMERLG--CTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILI 192

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G    G L+EAY+L  +++  G   S   Y+ ++  +     L EA +LF  M + G +
Sbjct: 193 DGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCR 252

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P     +++I   C  G++ E F L + +   G +  V +  +S L+ GLC      +A 
Sbjct: 253 PSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVT--YSTLISGLCSIARVDDAR 310

Query: 434 KLARFMLKKR 443
            L   M+K++
Sbjct: 311 HLLEDMVKRQ 320



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 139/276 (50%), Gaps = 4/276 (1%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL-CEKARL 144
           L S    S+  YN       +       +++ ++ + +GC  S     ++ +  C++ ++
Sbjct: 212 LDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKM 271

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            +EA  +L++M +    PD + Y+ +I   C    +  A  L++ M      P ++T  +
Sbjct: 272 -DEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNT 330

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C AGR+++A  +   M   G + ++V Y+ L+ G CR G  ERA ELL +M   G
Sbjct: 331 LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG 390

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
              +PNVVTYT+++   C    + EA G+  +M++ GCAPN  T + LI GFC  G +D 
Sbjct: 391 --LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDG 448

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
             +L  ++V  G       Y +L  EL ++ R   A
Sbjct: 449 GLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARA 484



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 135/286 (47%), Gaps = 18/286 (6%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C ++R+     ++ D+V   K +     V    +I  LC+  R+  EA  VL  M     
Sbjct: 301 CSIARVDDARHLLEDMV---KRQCKPTVVTQNTLIHGLCKAGRI-KEAREVLDAMVSSGQ 356

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD + YN ++   C  G    A EL+  M    L P+++TY +++ G C A RL +ACG
Sbjct: 357 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACG 416

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +F  MK  GCA NL  Y+AL+ G C  G ++  L+L GEM   G   SP+ V Y ++   
Sbjct: 417 VFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAG--ISPDHVVYGTLAAE 474

Query: 281 FCGKGMMKEALGILD------RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            C  G    AL IL       R EA G    R  +  L+      G ++ A   +  +V 
Sbjct: 475 LCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDA----GKMEMALGFVRDMVR 530

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM--LASGVKPDGLA 378
           GG + +    +SLV  L ++ +  EA  +  ++  LA G K  G A
Sbjct: 531 GGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAYGGKARGKA 576


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 145/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M +  + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML  G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYMPSV 416



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++  + +++ D +    ++G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKM-DDANVLFDEM---LDKGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLN 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A +  G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMQVSGVQPDVYTYSVLINGLCKESKM-DDANVLFDEMLDKGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M KE  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
             +G  P   T + +I  FC +G++    +L+ ++   G + S
Sbjct: 373 LNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPS 415



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 122/270 (45%), Gaps = 8/270 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ K H           +L+ + +L    +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  F  +G ++ A  + D +      P+ V+ +TL+ G
Sbjct: 121 WGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L + +   G       YS L+  L +  ++ +A  LF +ML  G+ P+
Sbjct: 181 YIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 241 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
              M+ K +         +++   K GD E
Sbjct: 299 IDEMIMKGLXPDKITYTTLIDGNCKEGDLE 328


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 147/275 (53%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 161 AXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY  +I   C KG +K+A  ++  M   G  P+++T +TLI G C EGNLB A++
Sbjct: 279 LPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+   ML+ G+KPD    +++I E C
Sbjct: 339 HRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G  L +++++ G + SV +  ++VL+ G
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSVVT--YNVLMNG 431



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 128/274 (46%), Gaps = 15/274 (5%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+Y+ L++G  RLG ++   
Sbjct: 138 YPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 197

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M +A  + D M   G  PN VT +TLI 
Sbjct: 198 RLKSAMXASG--VQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLID 255

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++   +     Y+ L+  L +   LK+A  L  +M   G+KP
Sbjct: 256 GHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKP 315

Query: 375 DGLACSVMIRELCLGGQVLEGF-----CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           D +  + +I   C  G +   F      + E+I        +D   ++ L+ GLC++   
Sbjct: 316 DKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIR-------LDDVAYTALISGLCQEGRX 368

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V+A K+ R ML   +         I+    K GD
Sbjct: 369 VDAEKMLRXMLSVGLKPDAXTYTMIINEFCKKGD 402



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 113/240 (47%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    +  +L+
Sbjct: 71  DIYVFSGLIXAYLESGFLRDAIECYRLTREHKFXXPFDTCRKVLEHLMKL----KYFKLV 126

Query: 258 GEMEKEGGDCS-PNVVTYTSVI-QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               KE  +C  P  + + +++   FC  G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 127 WGFYKEILECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNG 186

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   + A G       YS L+  L +  ++ +A +LF +ML  G+ P+
Sbjct: 187 YIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPN 246

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 247 XVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP--DLITYNXLIYGLCKKGDLKQANDL 304



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 1/105 (0%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C++  L B A     +M E ++R D + Y  +I   C++G  + A+++++ M  + L PD
Sbjct: 328 CKEGNL-BTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPD 386

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             TY  +I  FC  G +     L K M+R G   ++V Y+ L++G
Sbjct: 387 AXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 153/303 (50%), Gaps = 9/303 (2%)

Query: 138 LCEKARLANEAMWVL-RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           LC     ++E  W L  ++P     P+   +N +I   C++GD+  A  L+  M  I   
Sbjct: 171 LCLARERSSELAWRLFEQLPA----PNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCS 226

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD++TY S+I G+   G LE+   L   M+  GC  ++V Y+AL++  C+ G MERA   
Sbjct: 227 PDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSY 286

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             EM++EG     NVVT+++ +  FC  GM++EA+ +  +M   G  PN VT + L+ G 
Sbjct: 287 FAEMKREG--VMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGT 344

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G LD+A  L +++V  G   +   Y+ LV  L +  ++ EAE +F  M  +G++ + 
Sbjct: 345 CKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANE 404

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           L  + +I    +         L  +++  G    +D  ++  L+ GLC      EA  L 
Sbjct: 405 LLYTTLIHGHFVYKNSERALSLLSEMKDKGM--ELDVSLYGALIWGLCNLQKLDEAKSLL 462

Query: 437 RFM 439
             M
Sbjct: 463 NKM 465



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 150/336 (44%), Gaps = 40/336 (11%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           RPD + YN ++  FC+ G M  A      M    +  +++T+ + +  FC  G + +A  
Sbjct: 261 RPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMK 320

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M+  G   N V Y+ L+DG C+ G ++ AL L  EM ++G     NVVTYT ++  
Sbjct: 321 LFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQG--VPLNVVTYTVLVDG 378

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN------------------- 321
            C +G + EA  +   ME  G   N +  +TLI G  V  N                   
Sbjct: 379 LCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELD 438

Query: 322 ----------------LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
                           LDEA  L++K+   G   +   Y++++    + ++  EA  L  
Sbjct: 439 VSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQ 498

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           KM+ SG +P+ +    ++  LC  G + E    +  +  +G   +V +  ++ L+ GLC+
Sbjct: 499 KMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQA--YTALVDGLCK 556

Query: 426 KNHSVEAAKLARFMLKKRIWLQGPYVDKIVE-HLKK 460
                +A  L   M+ K + L       +++ HLK+
Sbjct: 557 NGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQ 592



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 177/403 (43%), Gaps = 39/403 (9%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+  R+++  S   ++    K EG + +V       +   K  +  EAM +  +M
Sbjct: 270 LVNCFCKFGRMERAYSYFAEM----KREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQM 325

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               ++P+ + Y  ++   C+ G +  A  L   M    +  +++TY  ++ G C  G++
Sbjct: 326 RMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKV 385

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG----------- 264
            +A  +F++M+R G  AN + Y+ L+ G     + ERAL LL EM+ +G           
Sbjct: 386 AEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGAL 445

Query: 265 --GDCS--------------------PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
             G C+                    PN V YT+++          EA+ +L +M   G 
Sbjct: 446 IWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGF 505

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN VT   L+ G C  G++DEA    +K+V  G   +   Y++LV  L +  RL +A  
Sbjct: 506 RPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVL 565

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           L  +M+  G+  D + C+ ++      G + + F L   +   G    +D   ++  + G
Sbjct: 566 LLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGL--QLDLYGYTCFVWG 623

Query: 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            C  N   EA ++   M++  I       + ++   +K G+ E
Sbjct: 624 FCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNME 666



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C + ++ +  S++  + E   +   V+   +M   F    KAR  +EA+ +L+KM +   
Sbjct: 450 CNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACF----KARKESEAIALLQKMMDSGF 505

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           RP+ + Y  ++   C+ G +  A      M  + L P++  Y +++ G C  GRL+ A  
Sbjct: 506 RPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVL 565

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M   G + + V  ++L+DG  + G+++ A  L  +M   G     ++  YT  +  
Sbjct: 566 LLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSG--LQLDLYGYTCFVWG 623

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           FC   M++EA  +L  M   G  P+ V  + LI      GN++EA
Sbjct: 624 FCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEA 668



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 1/128 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC+  RL ++A+ +L +M +  +  D ++  +++    ++G++  A  L   M   
Sbjct: 550 LVDGLCKNGRL-DKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINS 608

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L  D+  Y   + GFCN   +++A  +   M  +G   + V Y+ L++   +LG+ME A
Sbjct: 609 GLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEA 668

Query: 254 LELLGEME 261
             L  EME
Sbjct: 669 AILQNEME 676


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 147/281 (52%), Gaps = 4/281 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++P  + +N +I   C   D+ A D L K M  + + PD+ TY ++IKGFC  GR+E+A 
Sbjct: 216 VQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAV 275

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +F  M+  G   N V ++ L+D  C+ G++   ++L  +M   G    P++V Y +++ 
Sbjct: 276 KMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRG--VMPDLVAYNALVN 333

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C    +K A  I++ M+  G  P++VT +TLI G C +G LD A  +  K+       
Sbjct: 334 GLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSL 393

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y++L+  L +  R  +AE++  +M+ + ++PD    +++I   C  G V  GF L 
Sbjct: 394 DEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLL 453

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           ++++  G    V +  ++V++ GLC+      A  L   ML
Sbjct: 454 KEMQNKGKKPGVVT--YNVIMNGLCKLGQMKNADMLLHAML 492



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 144/285 (50%), Gaps = 10/285 (3%)

Query: 114 IDVVEAYKEEGCVVSVK-----MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           +D V+   +E   V VK        +I   C   R+ N A+ +  +M +  + P+ +++ 
Sbjct: 236 LDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMEN-AVKMFNEMRDTGVNPNAVVFT 294

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I   C++G++ A  +L + M +  + PD++ Y +++ G C A  L+ A  + + MK  
Sbjct: 295 TLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNA 354

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEM-EKEGGDCSPNVVTYTSVIQIFCGKGMM 287
           G   + V Y+ L+DG C+ G ++ A+++  +M EKE    S + VTYT++I      G  
Sbjct: 355 GLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKE---VSLDEVTYTALISGLSKAGRP 411

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            +A  +L  M      P+  T + +I  FC +G++   ++L+ ++   G       Y+ +
Sbjct: 412 VDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVI 471

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +  L +  ++K A+ L   ML  GV PD +  ++++   C  G+V
Sbjct: 472 MNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKV 516



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 157/353 (44%), Gaps = 34/353 (9%)

Query: 45  NIEKTLATVKAKLDSTCV---IEVLHRCFPSQSQMGIR--FFIWAALQSSYRHSSFMYNR 99
           +++ T+ T    +   C    ++ +   +   S +G++   + + AL   +  +  M N 
Sbjct: 215 SVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENA 274

Query: 100 A---CEMSRIKQNPSIII--DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
                EM     NP+ ++   +++A+ +EG V                   N  M + + 
Sbjct: 275 VKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNV-------------------NAGMDLYQD 315

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M    + PD + YN ++   C   ++ AA+ +++ M    L PD +TY ++I G C  G+
Sbjct: 316 MRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGK 375

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L+ A  + + M     + + V Y+AL+ G+ + G    A  +L EM +      P+  TY
Sbjct: 376 LDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAA--LEPDNTTY 433

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           T VI  FC KG +K    +L  M+  G  P  VT + ++ G C  G +  A  L+  ++ 
Sbjct: 434 TMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLN 493

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
            G       Y+ L+    +  ++  +E+L S   + G+ PD    + +I EL 
Sbjct: 494 IGVSPDDITYNILLDGQCKHGKVANSEELES---SKGMVPDFAVYTSLISELA 543



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 124/320 (38%), Gaps = 66/320 (20%)

Query: 208 GFCNAGRLEDACGLFKVMKRHGC--------------------------------AANLV 235
            + + G L DAC L  +  R G                                 A    
Sbjct: 128 AYADEGLLPDACSLVLLALRRGISLPAPVCSGLMSRLPSTPEAYTFYLQLLDAGMAPETR 187

Query: 236 AYSALLDGICRLGSMERALELLGEMEKE------------GGDC---------------- 267
            ++ L+    RLG +  A ++  EM +              G C                
Sbjct: 188 LFNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMS 247

Query: 268 ----SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
                P+V TY ++I+ FC  G M+ A+ + + M   G  PN V  +TLI   C EGN++
Sbjct: 248 DVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVN 307

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
               L   +   G +     Y++LV  L R + LK AE +  +M  +G+KPD +  + +I
Sbjct: 308 AGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLI 367

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
              C  G++     + + + +     S+D   ++ L+ GL +    V+A ++ R M++  
Sbjct: 368 DGCCKDGKLDMAMDIKQKMAEKEV--SLDEVTYTALISGLSKAGRPVDAERVLREMMEAA 425

Query: 444 IWLQGPYVDKIVEHLKKSGD 463
           +         +++   + GD
Sbjct: 426 LEPDNTTYTMVIDAFCRKGD 445


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 181/382 (47%), Gaps = 24/382 (6%)

Query: 78  IRFFIWAALQSSYRHSS----FMYNRACEMSRIKQNPSIIIDVVEAYKEE---------- 123
           I+FF W + +  Y+H+      M NR            I I +++A + E          
Sbjct: 92  IQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFL 151

Query: 124 ------GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
                 G   S+     +     K  +   A  + ++M    ++P  + +N +I +  +K
Sbjct: 152 NEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKK 211

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A+ ++  +   DL PD+ TY S+I G C    L+ A G+F  M + GC  N V Y
Sbjct: 212 GKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTY 271

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           S L++G+C  G ++ AL++L EM ++G    P V TYT  I   C     +EA+ ++ RM
Sbjct: 272 STLINGLCNEGRVDEALDMLEEMIEKG--IEPTVYTYTLPITALCAIEHEEEAIELVARM 329

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           +  GC PN  T + LI G    G L+ A  L  K++  G V +   Y++L+ EL    R 
Sbjct: 330 KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRF 389

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
             A K+F  M   G   +    + +I+ LCLGG + +   L+E + K+G L +V +  ++
Sbjct: 390 STALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVT--YN 447

Query: 418 VLLLGLCRKNHSVEAAKLARFM 439
            L+ G   K +   AA+L   M
Sbjct: 448 TLINGYLTKGNVNNAARLLDLM 469



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 156/321 (48%), Gaps = 4/321 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +V   K+ GC  +V+    + +   +      A+ +  KM +  L P+T+ YN +I   C
Sbjct: 325 LVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELC 384

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G    A ++   M       +  TY  +IKG C  G +E A  LF+ M + G    +V
Sbjct: 385 VGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVV 444

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L++G    G++  A  LL  M++ G  C P+  TY  ++  F   G ++ A     
Sbjct: 445 TYNTLINGYLTKGNVNNAARLLDLMKENG--CEPDEWTYNELVSGFSKWGKLESASFYFQ 502

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   G  PN V+ + LI G   +G +D A  L+ ++   G   +   Y++++  L +  
Sbjct: 503 EMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKEN 562

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R  EAEK+  KM+  G+ P+ +  + +I  LC  G+    F ++ D+EK   L ++ +  
Sbjct: 563 RFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT-- 620

Query: 416 HSVLLLGLCRKNHSVEAAKLA 436
           +S L+ GLC++  + EA +++
Sbjct: 621 YSSLIYGLCQEGKADEAERMS 641



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 162/359 (45%), Gaps = 36/359 (10%)

Query: 80  FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139
           F  W  L+S+    SF +    E   +  NP     +++ + ++G V             
Sbjct: 488 FSKWGKLESA----SFYFQEMVECG-LNPNPVSYTALIDGHSKDGKV------------- 529

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
                 + A+ +L++M E    P+   YN VI    ++     A+++   M    L P++
Sbjct: 530 ------DIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNV 583

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           ITY ++I G C  GR + A  +F  M++  C  NL  YS+L+ G+C+ G  + A E + E
Sbjct: 584 ITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA-ERMSE 642

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           +      C P + TY++++   C KG   EA  ++  M+  G  P+R    +L+   C  
Sbjct: 643 I-----GCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKN 697

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
             +D A ++   + A G       Y +L+  L +  +++EA+ LF  ML      D +  
Sbjct: 698 LEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVW 757

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG--LCRKNHSVEAAKLA 436
           +V++  L   G++     L   +E   F      +I + ++LG  L R   S+E+  LA
Sbjct: 758 TVLVDGLLKEGELDLCMKLLHIMESKNF----TPNIQTYVILGRELSRIGKSIESEPLA 812



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 126/262 (48%), Gaps = 39/262 (14%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +E A  L+K M   G   +L+ ++ L++ + + G +  A  +L ++ +   D SP+V TY
Sbjct: 179 VEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQY--DLSPDVFTY 236

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           TS+I   C    +  A G+ DRM   GC PN VT STLI G C EG +DEA  ++++++ 
Sbjct: 237 TSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 296

Query: 335 GG-----------------------------SVSSGGC------YSSLVVELVRTKRLKE 359
            G                              +   GC      Y++L+  L R  +L+ 
Sbjct: 297 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 356

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A  L+ KML  G+ P+ +  + +I ELC+GG+      ++  +E  G L+  ++  ++ +
Sbjct: 357 AIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA--NTQTYNEI 414

Query: 420 LLGLCRKNHSVEAAKLARFMLK 441
           + GLC      +A  L   MLK
Sbjct: 415 IKGLCLGGDIEKAMVLFEKMLK 436



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 119/290 (41%), Gaps = 39/290 (13%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           I + +++  +E GC  +V+    + N   K    +EA  +  KM E  L P+ I Y  +I
Sbjct: 531 IALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLI 590

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
              C  G    A ++   M      P++ TY S+I G C  G+ ++A    + M   GC 
Sbjct: 591 DGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA----ERMSEIGCE 646

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI------------Q 279
             L  YS L+ G+CR G    A +L+ +M KE G C    + Y+ +I            +
Sbjct: 647 PTLDTYSTLVSGLCRKGRFYEAEQLVKDM-KERGFCPDREIYYSLLIAHCKNLEVDHALK 705

Query: 280 IF----------------------CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
           IF                      C  G ++EA  + D M       + +  + L+ G  
Sbjct: 706 IFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLL 765

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            EG LD   +L+  + +     +   Y  L  EL R  +  E+E L  K+
Sbjct: 766 KEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKL 815


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 193/420 (45%), Gaps = 70/420 (16%)

Query: 74  SQMGIRFFIWAALQSSYRHSSFMY-------------NRACEM-----------SRIKQN 109
           S + + FF WA     +RH   +Y              +ACE+            R+K+ 
Sbjct: 95  SMVTLSFFHWAIGYPKFRHFMRLYIVCAMSLIGNRNSEKACEVMRCMVESFSEVGRLKEA 154

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
             ++I++      +G V + + +  I  +  +  L   A  +  +M    ++PD+I Y  
Sbjct: 155 VEMVIEM----HNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPDSISYRV 210

Query: 170 VIRLFCEKGDMIAADELMKGM---------------------------------GLID-- 194
           ++ ++C+ G+++ AD+ +  M                                  L+D  
Sbjct: 211 MVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMG 270

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           L P++I +  MI+G C  G ++ A  + + M   G   N+  +++L+DG+C+ G  E+A 
Sbjct: 271 LEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAF 330

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L  ++ +      PNV+TYT++I  +C +  +  A  +L RM+  G  PN  T +TLI 
Sbjct: 331 RLFLKLVRSENH-KPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLID 389

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  GN + AY L++ + + G   +   Y+++V  L +  R++EA K+      +G+KP
Sbjct: 390 GHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKP 449

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCRKNHSVEA 432
           D    ++++ E C    + +   L+  + KIG    +  DIHS   L+   CR+N   E+
Sbjct: 450 DKFTYNILMSEHCKQENIRQALALFNKMLKIG----IQPDIHSYTTLIAVFCRENRMKES 505



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 159/315 (50%), Gaps = 5/315 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G VV      +I +          A+W  R++ +  L P+ I +  +I   C++G + 
Sbjct: 233 ERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIK 292

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSAL 240
            A E+++ M      P++ T+ S+I G C  G  E A  LF K+++      N++ Y+A+
Sbjct: 293 QAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAM 352

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G CR   + RA  LL  M+++G    PN  TYT++I   C  G  + A  +++ M + 
Sbjct: 353 ISGYCREDKLNRAEMLLSRMKEQG--LVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSE 410

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G +PN  T + ++ G C  G + EAY++++     G       Y+ L+ E  + + +++A
Sbjct: 411 GFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQA 470

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             LF+KML  G++PD  + + +I   C   ++ E    +E+  +IG + +  +  ++ ++
Sbjct: 471 LALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPT--NKTYTSMI 528

Query: 421 LGLCRKNHSVEAAKL 435
            G CR+ +   A K 
Sbjct: 529 CGYCREGNLTLAMKF 543



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 134/275 (48%), Gaps = 2/275 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+K          L+ +   + +P+ + Y  +I  +C +  +  A+ L+  M   
Sbjct: 316 LIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQ 375

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+  TY ++I G C AG  E A  L  +M   G + NL  Y+A+++G+C+ G ++ A
Sbjct: 376 GLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEA 435

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++L +  + G    P+  TY  ++   C +  +++AL + ++M  +G  P+  + +TLI
Sbjct: 436 YKMLEDGFQNG--LKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLI 493

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             FC E  + E+    ++ V  G + +   Y+S++    R   L  A K F ++   G  
Sbjct: 494 AVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCA 553

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
           PD +    +I  LC   +  E   LY+ + + G +
Sbjct: 554 PDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLV 588



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 144/298 (48%), Gaps = 6/298 (2%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
           Y H+S + +  C+    ++   + + +V +   +  V++   M  I   C + +L N A 
Sbjct: 311 YTHTSLI-DGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAM--ISGYCREDKL-NRAE 366

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            +L +M E  L P+T  Y  +I   C+ G+   A +LM  M      P++ TY +++ G 
Sbjct: 367 MLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGL 426

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C  GR+++A  + +   ++G   +   Y+ L+   C+  ++ +AL L  +M K G    P
Sbjct: 427 CKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIG--IQP 484

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           ++ +YT++I +FC +  MKE+    +    +G  P   T +++I G+C EGNL  A +  
Sbjct: 485 DIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFF 544

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
            ++   G       Y +++  L +  +  EA  L+  M+  G+ P  +    +  E C
Sbjct: 545 HRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYC 602


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 169/358 (47%), Gaps = 46/358 (12%)

Query: 95  FMYN----RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150
           F YN      CE  R+ +   ++ D + AY     V    +++    LC+K+ +  EAM 
Sbjct: 222 FTYNIWIRGLCEAGRLPEAVRLV-DGMRAYAVPDVVTYNTLIR---GLCKKS-MPQEAMH 276

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
            LR+M      PD   YN +I  +C+   +  A EL+K        PD +TY S+I G C
Sbjct: 277 YLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLC 336

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G +E A  LF   +  G   ++V Y++L+ G+C  G +  AL+++ EM +EG  C P+
Sbjct: 337 AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEG--CHPD 394

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY  VI   C  G + +A  +++     G  P+  T +TLI G+C    LD A QL++
Sbjct: 395 IQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVE 454

Query: 331 KVVAGG---------SVSSGGC--------------------------YSSLVVELVRTK 355
           ++   G         SV +G C                          Y+ L+    R+ 
Sbjct: 455 RMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSN 514

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           +++EA K+  KM   G+ PD ++ + +I   C  G +   + L++ +E+ G+ ++ D+
Sbjct: 515 KMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADT 572



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 138/267 (51%), Gaps = 2/267 (0%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
            A+ V+ +M E    PD   YN VI   C+ G++  A  +M    +    PD+ T+ ++I
Sbjct: 378 HALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLI 437

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C   +L+ A  L + M  +G A + + Y+++L+G+C+ G +    E   EM  +G  
Sbjct: 438 DGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG-- 495

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PN +TY  +I+ FC    M+EA  ++ +M   G  P+ V+ +TLI GFC  G+L+ AY
Sbjct: 496 CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAY 555

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L  K+   G  ++   +++L+        +  AEK+F +ML+ G + D     V+I   
Sbjct: 556 LLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGS 615

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           C    V   +    ++ K GF+ S+ +
Sbjct: 616 CKTANVDRAYMHLVEMIKKGFIPSMST 642



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 153/323 (47%), Gaps = 24/323 (7%)

Query: 116 VVEAYKEEGCVVSVKMMKV------------IFNLCEKARLANEAMWVLRKMPEFDLRPD 163
           V  AY ++   V V+M+              + + C  AR  + A+ +LR +P       
Sbjct: 96  VDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTAR-PHIALRLLRALP----HRG 150

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR-LEDACGLF 222
            + Y  V+      G    A +L   M    ++P++  +  ++   C  G  LE    L 
Sbjct: 151 AVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLG 210

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           KV++R G + NL  Y+  + G+C  G +  A+ L+  M        P+VVTY ++I+  C
Sbjct: 211 KVIQR-GMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA---VPDVVTYNTLIRGLC 266

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            K M +EA+  L RM   GC P+  T +T+I G+C    + EA +L+   V  G V    
Sbjct: 267 KKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQV 326

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y SL+  L     ++ A +LF++  A G+KPD +  + +++ LCL G +L    +  ++
Sbjct: 327 TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEM 386

Query: 403 EKIGFLSSVDSDIHSVLLLGLCR 425
            + G     D   +++++ GLC+
Sbjct: 387 AEEG--CHPDIQTYNIVINGLCK 407



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 105/262 (40%), Gaps = 37/262 (14%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + +VE   E G          + N   KA   NE     ++M      P+ I YN +I  
Sbjct: 450 LQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIEN 509

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC    M  A +++  M    L+PD +++ ++I GFC  G LE A  LF+ ++  G    
Sbjct: 510 FCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG---- 565

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              YSA  D                              T+ ++I  F GK  M  A  I
Sbjct: 566 ---YSATAD------------------------------TFNTLIGAFSGKLNMHMAEKI 592

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
            D M + G   +  T   LI G C   N+D AY  + +++  G + S   +  ++  L  
Sbjct: 593 FDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTV 652

Query: 354 TKRLKEAEKLFSKMLASGVKPD 375
             R+ +A  +   M+  GV P+
Sbjct: 653 NHRVFQAVGIIHIMVKIGVVPE 674



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 9/241 (3%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           YV+ I+ +  AGRL DA   F+ M    C     AY+A++D +      ++A ++   M 
Sbjct: 53  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 112

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G   SP++ T+T  ++ FC       AL +L  +   G     V   T++ G    G+
Sbjct: 113 AAG--VSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGA----VAYCTVVCGLYAHGH 166

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
             +A QL D+++      +   ++ ++  L +   + EA  L  K++  G+  +    ++
Sbjct: 167 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 226

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            IR LC  G++ E   L + +        V    ++ L+ GLC+K+   EA    R M+ 
Sbjct: 227 WIRGLCEAGRLPEAVRLVDGMRAYAVPDVV---TYNTLIRGLCKKSMPQEAMHYLRRMMN 283

Query: 442 K 442
           +
Sbjct: 284 Q 284



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 6/151 (3%)

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I+ +   G L +A    +++       +   Y++++  LV      +A K++ +MLA+GV
Sbjct: 57  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD    ++ +R  CL  +      L   +   G ++      +  ++ GL    H+ +A
Sbjct: 117 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVA------YCTVVCGLYAHGHTHDA 170

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            +L   ML   ++      +K++  L K GD
Sbjct: 171 RQLFDQMLHTHVFPNLAAFNKVLHALCKRGD 201


>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 131/253 (51%), Gaps = 3/253 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMIKGFCNAGRLEDACG 220
           P+ I Y+ ++   C  G +  A EL + M   D + PD +TY  +I GFC  G+ + A  
Sbjct: 307 PNVITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARN 366

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + + MK +GC  N+  YSAL+DG+C+ G ++ A  +L EM+  G    P+ +TYTS+I  
Sbjct: 367 VIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSG--LKPDAITYTSLINF 424

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           F   G + EA+ +L  M+   C  + VT + ++ G C EG  DEA  +I+K+   G   +
Sbjct: 425 FSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLN 484

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
            G Y  ++  L +   L++A KL   ML+ G  P     + ++  LC  G   +      
Sbjct: 485 KGSYRIVLNSLTQNCELRKANKLLGLMLSRGFVPHYATSNELLVRLCKEGMANDAATALF 544

Query: 401 DIEKIGFLSSVDS 413
           D+  +GF    DS
Sbjct: 545 DLVDMGFQPQHDS 557



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 132/266 (49%), Gaps = 4/266 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           LC   RL  EA  +  +M   D + PD + YN +I  FC +G    A  +++ M      
Sbjct: 319 LCRNGRLK-EAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCC 377

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P++  Y +++ G C AG+L+DA G+   MK  G   + + Y++L++   R G ++ A+EL
Sbjct: 378 PNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIEL 437

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EM++   DC  + VT+  ++   C +G   EAL +++++   G   N+ +   ++   
Sbjct: 438 LTEMKE--NDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSL 495

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
                L +A +L+  +++ G V      + L+V L +     +A      ++  G +P  
Sbjct: 496 TQNCELRKANKLLGLMLSRGFVPHYATSNELLVRLCKEGMANDAATALFDLVDMGFQPQH 555

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDI 402
            +  ++I  +C   ++L  F L +++
Sbjct: 556 DSWELLIDLICRDRKLLYVFELLDEL 581



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 4/224 (1%)

Query: 115 DVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +V+E  K  GC  +V     ++  LC+  +L  +A  VL +M    L+PD I Y ++I  
Sbjct: 366 NVIEFMKNNGCCPNVFNYSALVDGLCKAGKL-QDAKGVLAEMKSSGLKPDAITYTSLINF 424

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           F   G +  A EL+  M   D   D +T+  ++ G C  GR ++A  + + + + G   N
Sbjct: 425 FSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLN 484

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
             +Y  +L+ + +   + +A +LLG M   G    P+  T   ++   C +GM  +A   
Sbjct: 485 KGSYRIVLNSLTQNCELRKANKLLGLMLSRG--FVPHYATSNELLVRLCKEGMANDAATA 542

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           L  +  +G  P   +   LI   C +  L   ++L+D++V   S
Sbjct: 543 LFDLVDMGFQPQHDSWELLIDLICRDRKLLYVFELLDELVTSNS 586



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 113/238 (47%), Gaps = 3/238 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C + + A+ A  V+  M      P+   Y+ ++   C+ G +  A  ++  M   
Sbjct: 351 LINGFCREGK-ADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSS 409

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD ITY S+I  F   G++++A  L   MK + C A+ V ++ +L G+CR G  + A
Sbjct: 410 GLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEA 469

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+++ ++ ++G     N  +Y  V+        +++A  +L  M + G  P+  T + L+
Sbjct: 470 LDMIEKLPQQG--VYLNKGSYRIVLNSLTQNCELRKANKLLGLMLSRGFVPHYATSNELL 527

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
              C EG  ++A   +  +V  G       +  L+  + R ++L    +L  +++ S 
Sbjct: 528 VRLCKEGMANDAATALFDLVDMGFQPQHDSWELLIDLICRDRKLLYVFELLDELVTSN 585


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 184/370 (49%), Gaps = 8/370 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + N  C+M     N ++ + +++  +E+GC  +V     I +   K RL  EAM    
Sbjct: 49  STIINGLCKMG----NTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFS 104

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M +  + PD   Y++++  FC  G +  A  L K M   ++ P+ +T+  +I G C   
Sbjct: 105 EMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKR 164

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            + +A  +F+ M   G   ++  Y+AL+DG C    M+ A +L   M+++G  C+PNV +
Sbjct: 165 MISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKG--CAPNVRS 222

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y  +I   C  G + EA G+L  M      P+  T STL++GFC  G   EA +L+ ++ 
Sbjct: 223 YNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMC 282

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           + G + +   YS ++  L +   L EA +L   M  S ++P+    +++I  +C  G++ 
Sbjct: 283 SYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLE 342

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
               L+ ++   G   +V +  ++V++ GL +   S EA +L R M            + 
Sbjct: 343 AARELFSNLFVKGIQPTVVT--YTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNV 400

Query: 454 IVEHLKKSGD 463
           I++   ++GD
Sbjct: 401 IIQGFLRNGD 410



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 144/287 (50%), Gaps = 8/287 (2%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M +  L+P  + +N ++   C K  ++ A +L   M  +   PD+ITY ++I G C  G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
              A  L K M+  GC  N+VAY+ ++D +C+   +  A++   EM KEG    P+V TY
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEG--IPPDVFTY 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           +S++  FC  G + EA  +  +M      PN+VT + LI G C +  + EA+ + + +  
Sbjct: 119 SSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTE 178

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y++LV       ++ EA+KLF+ M   G  P+  + +++I   C  G++ E
Sbjct: 179 KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDE 238

Query: 395 GFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFM 439
              L  ++       S+  DI  +S L+ G C+     EA +L + M
Sbjct: 239 AKGLLAEMSH----KSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEM 281



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 158/316 (50%), Gaps = 10/316 (3%)

Query: 134 VIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V FN     LC KA++  +A+ +  +M +    PD I Y+ +I   C+ G+   A +L+K
Sbjct: 11  VTFNTLLSGLCSKAKIM-DAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLK 69

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P+++ Y ++I   C    + +A   F  M + G   ++  YS++L G C LG
Sbjct: 70  KMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLG 129

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  A  L  +M +   +  PN VT+T +I   C K M+ EA  + + M   G  P+  T
Sbjct: 130 RVNEATSLFKQMVER--NVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYT 187

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + L+ G+C    +DEA +L + +   G   +   Y+ L+    ++ R+ EA+ L ++M 
Sbjct: 188 YNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMS 247

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
              + PD    S ++R  C  G+  E   L +++   G L ++ +  +S++L GLC+  H
Sbjct: 248 HKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLIT--YSIVLDGLCKHGH 305

Query: 429 SVEAAKLARFMLKKRI 444
             EA +L + M + +I
Sbjct: 306 LDEAFELLKAMQESKI 321



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 156/332 (46%), Gaps = 13/332 (3%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF--NLCEKARLANE 147
           + +SS ++   C + R+ +  S+   +VE       V+  K+   I    LC+K R+ +E
Sbjct: 116 FTYSSILHG-FCNLGRVNEATSLFKQMVERN-----VIPNKVTFTILIDGLCKK-RMISE 168

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   M E  L PD   YN ++  +C +  M  A +L   M      P++ +Y  +I 
Sbjct: 169 AWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILIN 228

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C +GR+++A GL   M       ++  YS L+ G C++G  + A ELL EM   G   
Sbjct: 229 GHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYG--L 286

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PN++TY+ V+   C  G + EA  +L  M+     PN    + LI+G C  G L+ A +
Sbjct: 287 LPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARE 346

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L   +   G   +   Y+ ++  L++     EA +LF +M  +G  P+    +V+I+   
Sbjct: 347 LFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFL 406

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
             G       L E++   GF  S DS    +L
Sbjct: 407 RNGDTPNAVRLIEEMVGKGF--SADSSTFRML 436



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 4/218 (1%)

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M + G    LV ++ LL G+C    +  A++L  EM K G +  P+V+TY+++I   C  
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHE--PDVITYSTIINGLCKM 58

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G    AL +L +ME  GC PN V  +T+I   C +  + EA     ++V  G       Y
Sbjct: 59  GNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTY 118

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           SS++       R+ EA  LF +M+   V P+ +  +++I  LC    + E + ++E + +
Sbjct: 119 SSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTE 178

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            G    V +  ++ L+ G C ++   EA KL   M +K
Sbjct: 179 KGLEPDVYT--YNALVDGYCSRSQMDEAQKLFNIMDRK 214


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 174/333 (52%), Gaps = 6/333 (1%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           +P + ++      + G   +V    V+ N LC++ ++  +A  +  ++ +  L+P  + +
Sbjct: 212 SPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKV-KDAQLIFDEIRKTGLQPTAVSF 270

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N +I  +C+ G++     L   M    ++PD+ TY ++I G C   +LEDA  LFK M  
Sbjct: 271 NTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCD 330

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   N V ++ L++G C+ G ++ ALE+  +M  +G     ++V Y ++I   C  G  
Sbjct: 331 RGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKG--LKADLVLYNTLIDGLCKGGYF 388

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           +EA   +  M   G  P++ T +TL+ G C EG+L+ A ++  ++V  G       ++++
Sbjct: 389 REARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAI 448

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  L R  ++ +AE+   +ML +G+KPD    ++++   C  G V  GF L ++++  G 
Sbjct: 449 ISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGH 508

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           +  V +  ++VL+ GLC++     A  L   ML
Sbjct: 509 IPGVIT--YNVLMNGLCKQGQVKNADMLLNAML 539



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 171/365 (46%), Gaps = 12/365 (3%)

Query: 65  VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN----RACEMSRIKQNPSIIIDVVEAY 120
           +L R     S M    F    L S Y  + + +N    R C+  ++K +  +I D +   
Sbjct: 203 LLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVK-DAQLIFDEIRKT 261

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
             +   VS   +  I   C+   L  E   +   M EF + PD   Y+ +I   C++  +
Sbjct: 262 GLQPTAVSFNTL--INGYCKSGNL-EEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQL 318

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A+ L K M    L P+ +T+ ++I G C  GR++ A  +++ M   G  A+LV Y+ L
Sbjct: 319 EDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTL 378

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG+C+ G    A + +GEM K G    P+  TYT+++   C +G ++ AL +   M   
Sbjct: 379 IDGLCKGGYFREARKFVGEMTKRG--LIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKE 436

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G   + V  + +I G C +G + +A + + +++  G     G Y+ ++    +   +K  
Sbjct: 437 GIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMG 496

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            KL  +M + G  P  +  +V++  LC  GQV     L   +  +G +   D   +++LL
Sbjct: 497 FKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVP--DDITYNILL 554

Query: 421 LGLCR 425
            G C+
Sbjct: 555 QGHCK 559



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 130/267 (48%), Gaps = 4/267 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P++ T+  ++   C  G+++DA  +F  +++ G     V+++ L++G C+ G++E    L
Sbjct: 230 PNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRL 289

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             +M  E     P+V TY+++I   C +  +++A  +   M   G  PN VT +TLI G 
Sbjct: 290 --KMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQ 347

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G +D A ++  ++   G  +    Y++L+  L +    +EA K   +M   G+ PD 
Sbjct: 348 CKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDK 407

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
              + ++   C  G +     + +++ K G    +D+   + ++ GLCR    V+A +  
Sbjct: 408 FTYTTLLDGSCKEGDLELALEMRKEMVKEGI--QLDNVAFTAIISGLCRDGKIVDAERTL 465

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           R ML+  +         +++   K GD
Sbjct: 466 REMLRAGLKPDDGTYTMVMDGFCKKGD 492



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 128/258 (49%), Gaps = 6/258 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + A+ + ++M    L+ D ++YN +I   C+ G    A + + 
Sbjct: 338 VTFTTLINGQCKNGRV-DLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVG 396

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    L PD  TY +++ G C  G LE A  + K M + G   + VA++A++ G+CR G
Sbjct: 397 EMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDG 456

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  A   L EM + G    P+  TYT V+  FC KG +K    +L  M++ G  P  +T
Sbjct: 457 KIVDAERTLREMLRAG--LKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVIT 514

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + L+ G C +G +  A  L++ ++  G V     Y+ L+    +  +L + + + ++M 
Sbjct: 515 YNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEM- 573

Query: 369 ASGVKPDGLACSVMIREL 386
             G+  D  +   ++ EL
Sbjct: 574 --GLVSDYASYRSLLHEL 589



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 126/273 (46%), Gaps = 4/273 (1%)

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
             + +++  +   G + DA   F++ K+H           LL+ + ++ S   ALE   E
Sbjct: 163 FVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLE 222

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           +   G    PNV T+  ++   C +G +K+A  I D +   G  P  V+ +TLI G+C  
Sbjct: 223 ILDSG--YPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKS 280

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           GNL+E ++L   +           YS+L+  L +  +L++A  LF +M   G+ P+ +  
Sbjct: 281 GNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTF 340

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + +I   C  G+V     +Y+ +   G     D  +++ L+ GLC+  +  EA K    M
Sbjct: 341 TTLINGQCKNGRVDLALEIYQQMFTKGL--KADLVLYNTLIDGLCKGGYFREARKFVGEM 398

Query: 440 LKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
            K+ +         +++   K GD EL   + K
Sbjct: 399 TKRGLIPDKFTYTTLLDGSCKEGDLELALEMRK 431



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           E  KE   + +V    +I  LC   ++  +A   LR+M    L+PD   Y  V+  FC+K
Sbjct: 432 EMVKEGIQLDNVAFTAIISGLCRDGKIV-DAERTLREMLRAGLKPDDGTYTMVMDGFCKK 490

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           GD+    +L+K M      P +ITY  ++ G C  G++++A  L   M   G   + + Y
Sbjct: 491 GDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITY 550

Query: 238 SALLDGICRLGSM 250
           + LL G C+ G +
Sbjct: 551 NILLQGHCKHGKL 563


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 130/243 (53%), Gaps = 2/243 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM + ++M      PD   YN +I   C +G +  A  L+K M +     ++ITY ++I 
Sbjct: 425 AMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLID 484

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC   R+ +A  +F  M+  G + N V Y+ L+DG+C+   +E A +L+ +M  EG   
Sbjct: 485 GFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEG--L 542

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+  TY S++  FC  G +K+A  I+  M + GC P+ VT  TLI G C  G ++ A +
Sbjct: 543 RPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATK 602

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+  +   G   +   Y+ ++  L R KR KEA +LF +M+     PD +   ++ R LC
Sbjct: 603 LLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLC 662

Query: 388 LGG 390
            GG
Sbjct: 663 QGG 665



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 166/338 (49%), Gaps = 8/338 (2%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           EG         ++ N   K      A+ V+  M      PD   YN++I   C+ G++  
Sbjct: 295 EGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDE 354

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +++  M   D  P+ +TY ++I   C   ++E+A  L  V+   G   ++  Y++L+ 
Sbjct: 355 AVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQ 414

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C   +   A+EL  EM+ +G  C P+  TY  +I   C +G ++EAL +L  ME  GC
Sbjct: 415 GLCLSRNHTVAMELYKEMKTKG--CHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGC 472

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
           A N +T +TLI GFC    + EA ++ D++   G   +   Y++L+  L +++R++EA +
Sbjct: 473 ARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQ 532

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLL 420
           L  +M+  G++PD    + ++   C  G + +      DI +       + DI  +  L+
Sbjct: 533 LMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKA----ADIVQTMASDGCEPDIVTYGTLI 588

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
            GLC+      A KL R +  K I L     + +++ L
Sbjct: 589 AGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQAL 626



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 173/362 (47%), Gaps = 41/362 (11%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC +A     A+ ++ +M +F L PD   +  +++ F E+G++  A  + + M       
Sbjct: 205 LC-RAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVV 263

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMK-RHGCAANLVAYSALLDGICRLGSMERALEL 256
             +T   ++ GFC  GR+E+A    + M  R G   +   ++ L++G+ + G ++ ALE+
Sbjct: 264 TNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEV 323

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           +  M +EG D  P++ TY S+I   C  G + EA+ +L++M    C+PN VT +T+I   
Sbjct: 324 MDMMLREGFD--PDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTL 381

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C E  ++EA +L   +   G +     Y+SL+  L  ++    A +L+ +M   G  PD 
Sbjct: 382 CKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDE 441

Query: 377 LACSVMIRELCLGGQV-------------------------LEGFC----------LYED 401
              +++I  LC  G++                         ++GFC          +++ 
Sbjct: 442 FTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQ 501

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
           +E  G   S +S  ++ L+ GLC+     EA++L   M+ + +       + ++ +  K+
Sbjct: 502 MELQGV--SRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKA 559

Query: 462 GD 463
           GD
Sbjct: 560 GD 561



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 115/487 (23%), Positives = 199/487 (40%), Gaps = 80/487 (16%)

Query: 22  FALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFF 81
            A H  T++    F T   +       +   +      T ++  L R     S   I  F
Sbjct: 19  LASHKPTSNSTLSFATTNHEPLTTTTNSATRLSPNFTPTQLLHSLRR--EEDSSAVIHLF 76

Query: 82  IWAALQSSYRHSSFMYN-------RACEMSRIKQ-------------NPSIIIDVVEAYK 121
            WA+ Q +++ SS ++        +A E   +K              N S+++  +E+Y 
Sbjct: 77  YWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLV-FIESYA 135

Query: 122 EEG----CVVSVKMMKVIFNLCEKARLANEAMWVL-------------RKMPEFDLRPDT 164
             G     +  V  M+V F +       N  + VL               M    +RPD 
Sbjct: 136 SFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDV 195

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
             +N +I+  C    +  A  LM+ M    L PD  T+ ++++GF   G L+ A  + + 
Sbjct: 196 STFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQ 255

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEME----------------------- 261
           M   GC    V  + L++G C+ G +E AL  + EM                        
Sbjct: 256 MVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTG 315

Query: 262 -------------KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
                        +EG D  P++ TY S+I   C  G + EA+ +L++M    C+PN VT
Sbjct: 316 HVKHALEVMDMMLREGFD--PDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVT 373

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +T+I   C E  ++EA +L   +   G +     Y+SL+  L  ++    A +L+ +M 
Sbjct: 374 YNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMK 433

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G  PD    +++I  LC  G++ E   L +++E  G   +V +  ++ L+ G C+   
Sbjct: 434 TKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVIT--YNTLIDGFCKNKR 491

Query: 429 SVEAAKL 435
             EA ++
Sbjct: 492 IAEAEEI 498



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 5/217 (2%)

Query: 124 GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC  +V     + +  C+  R+A EA  +  +M    +  +++ YN +I   C+   +  
Sbjct: 471 GCARNVITYNTLIDGFCKNKRIA-EAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEE 529

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +LM  M +  L PD  TY S++  FC AG ++ A  + + M   GC  ++V Y  L+ 
Sbjct: 530 ASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIA 589

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C+ G +E A +LL  ++ +G + +P+   Y  VIQ    +   KEA+ +   M     
Sbjct: 590 GLCKAGRVEAATKLLRTIQMKGINLTPHA--YNPVIQALFRRKRSKEAVRLFREMIEKAE 647

Query: 303 APNRVTISTLIKGFCVEGN-LDEAYQLIDKVVAGGSV 338
           AP+ VT   + +G C  G  + EA   + +++  G V
Sbjct: 648 APDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYV 684


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 164/309 (53%), Gaps = 4/309 (1%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           ++V M   I +   K +L  +A  +  +M    + PD + ++ +I  FC  G +  A  L
Sbjct: 206 INVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGL 265

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
            + M L ++ PD  T+  ++   C  G L+ A  +  VM + G   N+V YS+L+DG C 
Sbjct: 266 FREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCL 325

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
           +  + +A  +L  + + G   +PN  +Y ++I  FC   M+ EAL + + M+  G AP++
Sbjct: 326 VNQVNKAKHVLNTISQMGA--APNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDK 383

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT ++LI G C  G +  A++L+D++   G  ++   Y+ L+  L +   + +A  L  K
Sbjct: 384 VTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKK 443

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +   G++PD    +++I  LC  G++     +++D+   G+  SV++  +++++ GLC++
Sbjct: 444 IKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGY--SVNAWTYNIMVNGLCKE 501

Query: 427 NHSVEAAKL 435
               EA  L
Sbjct: 502 GLFDEAEAL 510



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 155/316 (49%), Gaps = 5/316 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I+  C   +L  EA  + R+M   ++ PD   +N ++   C++G++  A  ++ 
Sbjct: 244 VTFSALIYGFCIVGQLE-EAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLV 302

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P+++TY S++ G+C   ++  A  +   + + G A N  +Y  +++G C++ 
Sbjct: 303 VMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIK 362

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ AL L  +M+ +G   +P+ VTY S+I   C  G +  A  ++D M   G   N  T
Sbjct: 363 MVDEALSLFNDMQFKG--IAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFT 420

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + LI   C   ++D+A  L+ K+   G       ++ L+  L +  RLK A+ +F  +L
Sbjct: 421 YNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLL 480

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           + G   +    ++M+  LC  G   E   L   ++  G +   D+  +  L+  L  K+ 
Sbjct: 481 SKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIP--DAVTYETLIQALFHKDE 538

Query: 429 SVEAAKLARFMLKKRI 444
           + +A KL R M+ + +
Sbjct: 539 NEKAEKLLREMIARDV 554


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 146/264 (55%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    ++PD+ TY  +I 
Sbjct: 155 AQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ +V
Sbjct: 393 KKGDVWTGSKLLKEMQRXGYVPNV 416



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 3/180 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM + R+M    L PD I YN +I   C+KGD+  A +L+ 
Sbjct: 242 VTFTTLIDGHCKNGRV-DLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLID 300

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  L PD ITY ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G
Sbjct: 301 EMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEG 360

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G    P + TYT +I   C KG +     +L  M+  G  PN VT
Sbjct: 361 RSVDAEKMLREMLSVG--LKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 122/270 (45%), Gaps = 8/270 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D   +  +I  +  +G L DA   +++ K H           +++ + +L    +  +L+
Sbjct: 65  DXYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC +G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 121 WGFYEESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   + A G       YS L+  L +  ++ +A +LF +ML +G+ P+
Sbjct: 181 YIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  + +I   C  G+V     +Y  +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 241 XVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLP--DLITYNTLIYGLCKKGDLKQAHDL 298

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
              M  K +         +++   K GD E
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGXCKEGDLE 328


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 145/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  + D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYVPSV 416



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L   M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 126/284 (44%), Gaps = 39/284 (13%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRH----------------------------- 228
           DI  +  +I  +  +G L DA   +++ K H                             
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWGFY 124

Query: 229 ------GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
                 G  A+L  ++ L+    + G +  A  +   + K G    P+VV++ +++  + 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWG--LRPSVVSFNTLMNGYI 182

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G + E   + + M+A G  P+  T S LI G C E  +D+A +L D+++  G V +G 
Sbjct: 183 KLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            +++L+    +  R+  A +++ +ML+  + PD +  + +I  LC  G + +   L +++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEM 302

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
              G     D   ++ L+ G C++ H   A +  + M+K+ I L
Sbjct: 303 SMKGL--KPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRL 344


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 145/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G + SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGCMPSV 416



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  GC P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A +  G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMQASGVQPDVYTYSVLINGLCKESKM-DDANELFDEMLDNGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M KE  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            ++G  P   T + +I  FC +G++    +L+ ++   G + S
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMPS 415


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 154/312 (49%), Gaps = 12/312 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+M R+++     ID++    + GC   V     + +   K + + EA  + ++M
Sbjct: 300 LLNGLCKMGRLEE----AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 355

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               L  DT+ Y  +IR   + G +  A  + K M      PD++T  +MI G   AGR+
Sbjct: 356 ASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 415

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
             A  +FK M+  G A N V YSAL+ G+C+   M+ ALE+L +M+K    C+P+ +TY 
Sbjct: 416 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK--AFCTPDTITYN 473

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I   C  G ++ A    D M   GC P+  T + LI G C  GN D A  ++D +   
Sbjct: 474 ILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDM--- 530

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
              SS   YSSLV  L ++ +L+    LF +M  SGV  +    + +I  LC   +V E 
Sbjct: 531 --SSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVA-NSQTRTRLIFHLCKANRVDEA 587

Query: 396 FCLYEDIEKIGF 407
             L+  I K G 
Sbjct: 588 VSLFNAIRKEGM 599



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 164/370 (44%), Gaps = 38/370 (10%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC + +     I N   K +   EA+ ++ K+      P    YN ++   C+ G +  A
Sbjct: 254 GCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA 313

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            +L++ +      PD++TY S+I G     R  +A  LFK M   G A + V Y+AL+ G
Sbjct: 314 IDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRG 373

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           + + G + +A  +   M   G  C P+VVT +++I      G +  A+ I   MEA G A
Sbjct: 374 LLQTGKIPQASSVYKTMTSHG--CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLA 431

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN V  S LI G C    +D A +++ ++           Y+ L+  L ++  ++ A   
Sbjct: 432 PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF 491

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQV-----------------------------LE 394
           F +ML +G KPD    +++I  LC  G                               LE
Sbjct: 492 FDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSRFVYSSLVDGLCKSGKLE 551

Query: 395 GFC-LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV-D 452
           G C L+ ++E+ G     +S   + L+  LC+ N   EA  L  F   ++  +  PY  +
Sbjct: 552 GGCMLFHEMERSGV---ANSQTRTRLIFHLCKANRVDEAVSL--FNAIRKEGMPHPYAYN 606

Query: 453 KIVEHLKKSG 462
            I+  L KSG
Sbjct: 607 SIISALIKSG 616



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 163/325 (50%), Gaps = 6/325 (1%)

Query: 142 ARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           AR   EA  V+R+M E F + P    +N V+   C+ G ++AA +  + +    +     
Sbjct: 167 AREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRR-SMPVSAA 225

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T+  +I G   AG +  A  L +    +GC  ++  Y+A+++ + +   ++ A+ L+ ++
Sbjct: 226 TFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKI 285

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G  C+P + TY +++   C  G ++EA+ +L ++   GC P+ VT ++LI G   E 
Sbjct: 286 TANG--CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEK 343

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
              EAY+L  ++ + G      CY++L+  L++T ++ +A  ++  M + G  PD +  S
Sbjct: 344 RSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLS 403

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            MI  L   G++     +++ +E  G   + +  ++S L+ GLC+      A ++   M 
Sbjct: 404 TMIDGLSKAGRIGAAVRIFKSMEARGL--APNEVVYSALIHGLCKARKMDCALEMLAQMK 461

Query: 441 KKRIWLQGPYVDKIVEHLKKSGDEE 465
           K          + +++ L KSGD E
Sbjct: 462 KAFCTPDTITYNILIDGLCKSGDVE 486



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 140/285 (49%), Gaps = 4/285 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           SV     + ++  + +   EA  +L+       RPD   +N +I  +C   +   A  ++
Sbjct: 118 SVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVI 177

Query: 188 KGMGL-IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           + M     + P + T+  ++ G C +G++  A   F+ ++R     +   +S L++G+ +
Sbjct: 178 REMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRR-SMPVSAATFSILINGLVK 236

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G M +A  L  E    G  C+ ++ TYT+++        ++EA+ +++++ A GC P  
Sbjct: 237 AGMMIQAHSLAQETTTNG--CTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTI 294

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
            T + L+ G C  G L+EA  L+ K+V  G       Y+SL+  L + KR  EA KLF +
Sbjct: 295 ATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 354

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           M + G+  D +  + +IR L   G++ +   +Y+ +   G +  V
Sbjct: 355 MASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDV 399


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 142/264 (53%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P++ T +TLI G C EG+LD A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 333 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G   SV
Sbjct: 393 KKGDVWKGSKLLKEMQRNGHAPSV 416



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 110/215 (51%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M    L P+ + +  +I   C+ G +  A E+ K M   
Sbjct: 212 LINGLCKESKM-DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L+ A  L   M   G   +   Y+ L+DG C+ G ++ A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 330

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E    M +E  +   + V YT++I   C +G   +A  +L  M ++G  P+  T + +I
Sbjct: 331 FEHRKRMIQE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMII 388

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G   S   Y+ L+
Sbjct: 389 NEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 423



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 110/238 (46%), Gaps = 4/238 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   + + + H           +L+ + +L   +      
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            ++ + G   S  +  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 125 EDILECGYPAS--LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 182

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+LDE ++L   ++A G       YS L+  L +  ++ +A +LF +ML  G+ P+G+
Sbjct: 183 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 242

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQAHDL 298



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC++ R + +A  +LR+M    L+PD   Y  +I  FC+KGD+    +L+K
Sbjct: 347 VAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLK 405

Query: 189 GMGLIDLYPDIITYVSMIKG 208
            M      P ++TY  ++ G
Sbjct: 406 EMQRNGHAPSVVTYNVLMNG 425


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 164/309 (53%), Gaps = 5/309 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC+  R+  EA  +  +M    L PD + Y  +I  +C++G M  A  L   M  +
Sbjct: 299 VICGLCQTGRVM-EADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQM 357

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+I+TY ++  G C  G ++ A  L   M R G   N+  Y++L++G+C+ G++++A
Sbjct: 358 GLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQA 417

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++L+ +ME  G    P+ VTYT+++  +C    M  A  +L +M      P  VT + L+
Sbjct: 418 VKLMKDMEVAG--FHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLM 475

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC+ G L++  +L+  ++  G + +   Y+SL+ +      ++   +++  M A GV 
Sbjct: 476 NGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVV 535

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PDG   +++I+  C    + E + L+ D+   GF  +V S  ++ L+ G  ++   +EA 
Sbjct: 536 PDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSS--YNALIKGFYKRKKFLEAR 593

Query: 434 KLARFMLKK 442
           +L   M ++
Sbjct: 594 ELFEQMRRE 602



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 156/305 (51%), Gaps = 7/305 (2%)

Query: 143 RLANEAMWVLRKMPEFD---LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
           ++A +  WVL+ + E     L+P+   YN VI L C+ G +  A+ +++ M    + PD 
Sbjct: 199 KIALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDG 258

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           + Y ++I GFC  G +  A  LF  M++   + + + Y+A++ G+C+ G +  A +L  E
Sbjct: 259 VIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHE 318

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M  +     P+ VTYT++I  +C +G MKEA  + ++M  +G  PN VT + L  G C  
Sbjct: 319 MVCK--RLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKC 376

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +D A +L+ ++   G   +   Y+SLV  L +   + +A KL   M  +G  PD +  
Sbjct: 377 GEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTY 436

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + ++   C   +++    L   +       +V +   +VL+ G C      +  KL ++M
Sbjct: 437 TTLMDAYCKSREMVRAHELLRQMLDRELQPTVVT--FNVLMNGFCMSGMLEDGEKLLKWM 494

Query: 440 LKKRI 444
           L+K I
Sbjct: 495 LEKGI 499



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 161/315 (51%), Gaps = 5/315 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC+  ++A EA  VLR+M    + PD +IY  +I  FC+ G++ +A  L   M   
Sbjct: 229 VILLLCKTGKVA-EAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKR 287

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD ITY ++I G C  GR+ +A  LF  M       + V Y+AL+DG C+ G M+ A
Sbjct: 288 KISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEA 347

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  +M + G   +PN+VTYT++    C  G +  A  +L  M   G   N  T ++L+
Sbjct: 348 FSLHNQMLQMG--LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLV 405

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  GN+D+A +L+  +   G       Y++L+    +++ +  A +L  +ML   ++
Sbjct: 406 NGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQ 465

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P  +  +V++   C+ G + +G  L + + + G + +  +  ++ L+   C +N+     
Sbjct: 466 PTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATT--YNSLIKQYCIRNNMRATT 523

Query: 434 KLARFMLKKRIWLQG 448
           ++ R M  K +   G
Sbjct: 524 EIYRGMCAKGVVPDG 538



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 124/247 (50%), Gaps = 15/247 (6%)

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           D+C LF           +   S  LDGI      E  L+L+ EM+ +G    PN  TY  
Sbjct: 182 DSCNLF-----------ISHLSEDLDGIKIALKGEWVLKLIEEMQIKG--LKPNPYTYNG 228

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           VI + C  G + EA  +L  M + G AP+ V  +TLI GFC  GN+  AY+L D++    
Sbjct: 229 VILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRK 288

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
                  Y++++  L +T R+ EA+KLF +M+   ++PD +  + +I   C  G++ E F
Sbjct: 289 ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAF 348

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456
            L+  + ++G   ++ +  ++ L  GLC+      A +L   M +K + L     + +V 
Sbjct: 349 SLHNQMLQMGLTPNIVT--YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVN 406

Query: 457 HLKKSGD 463
            L K+G+
Sbjct: 407 GLCKAGN 413



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 61/114 (53%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L+ M E  + P+   YN++I+ +C + +M A  E+ +GM    + PD  TY  +IKG C
Sbjct: 490 LLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHC 549

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
            A  +++A  L + M   G    + +Y+AL+ G  +      A EL  +M +EG
Sbjct: 550 KARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREG 603


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 193/416 (46%), Gaps = 20/416 (4%)

Query: 32  AERFYTHLQKNPN-NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSY 90
           A  FY H+    + NI   + +    + S C + ++        +M +R      +  +Y
Sbjct: 162 ALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNAIELFREMPVR----KCVPDAY 217

Query: 91  RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAM 149
            + + M +  C++ RI +  S++    +  + EGC  S     V+ N LC+K        
Sbjct: 218 TYCTLM-DGLCKVDRIDEAVSLL----DEMQIEGCFPSPATFNVLINGLCKKGDFTR--- 269

Query: 150 WVLRKMPEFDLR---PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
            V + +    L+   P+ + YN +I   C KG +  A  L+  M      P+ +TY ++I
Sbjct: 270 -VTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTII 328

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G    GR  D   +  +M+  G   N   YS L+ G+ + G  E A+ L  E   +G  
Sbjct: 329 NGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKG-- 386

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C  N V Y++++   C      EA+ IL  M   GCAPN  T S+L+KGF   GN  +A 
Sbjct: 387 CKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAI 446

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           ++   +       +  CYS L+  L +  ++ EA  +++KMLA+G +PD +A S MI+ L
Sbjct: 447 EVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGL 506

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           C  G V E   LY ++  +   S  D   +++L   LC+++    A  L   ML +
Sbjct: 507 CDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDR 562



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 168/332 (50%), Gaps = 10/332 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP-EFDLRPDTIIYNNVIRLF 174
           V+   + E  V S K   V+F    KA L N+A+ +  +M  EF  +P    +N+V+ + 
Sbjct: 94  VLNRMRLENRVFSEKSFFVMFKAYGKAHLPNKAIELFYRMSFEFYCKPTVKSFNSVLNVI 153

Query: 175 CEKGDMIAADELMK---GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
            + G    A E      G   +++ P+++++  +IK  C  G +++A  LF+ M    C 
Sbjct: 154 IQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCV 213

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            +   Y  L+DG+C++  ++ A+ LL EM+ EG  C P+  T+  +I   C KG      
Sbjct: 214 PDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEG--CFPSPATFNVLINGLCKKGDFTRVT 271

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            ++D M   GC PN VT +TLI G C++G LD+A  L+D++V+   V +   Y +++  L
Sbjct: 272 KLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGL 331

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY-EDIEKIGFLSS 410
           V+  R  +  ++   M   G   +    SV++  L   G+  E   L+ E ++K   L++
Sbjct: 332 VKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNT 391

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           V   ++S L+ GLCR     EA K+   M  K
Sbjct: 392 V---LYSALVDGLCRDRKPDEAMKILSEMTDK 420



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 129/266 (48%), Gaps = 14/266 (5%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           ++GC ++  +   + +   + R  +EAM +L +M +    P+   ++++++ F E G+  
Sbjct: 384 DKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSH 443

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A E+ K M  I+   + + Y  +I G C  G++ +A  ++  M   GC  ++VAYS+++
Sbjct: 444 KAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMI 503

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G+C  GS+E AL+L  EM     D  P+V+TY  +    C +  +  A+ +L+ M   G
Sbjct: 504 QGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRG 563

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C P+ VT +  ++            + +D    G           LVV L++ +R   A 
Sbjct: 564 CDPDLVTCNIFLRML---------REKLDPPQDGAKF-----LDELVVRLLKRQRNLGAS 609

Query: 362 KLFSKMLASGVKPDGLACSVMIRELC 387
           K+   ML   + P     + ++ ELC
Sbjct: 610 KIVEVMLQKFLSPKASTWARVVHELC 635


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 182/370 (49%), Gaps = 9/370 (2%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           S+  + I+FF WA  Q  Y+H    YN   ++     +      V +     GC  ++  
Sbjct: 5   SRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVT 64

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
            K++     KA  A  A+  LR + EF + PD  I+N +I    + G+   A +L + M 
Sbjct: 65  FKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENME 124

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG--CAANLVAYSALLDGICRLGS 249
              + P+I+TY ++I G C +G LE A  L + M R G   A ++V Y+ L++   R   
Sbjct: 125 SSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASR 184

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           +  A     +M+  G   +P+V+T   ++   C  G ++EAL ILD M+  G  P+ +T 
Sbjct: 185 IREACAFREKMKAAG--INPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITY 242

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           +++I   CV G + EA +++  +     + +   +++L+    +   L  A ++  +M  
Sbjct: 243 NSIIHALCVAGKVVEAAEILKTMSCSPDLVT---FNTLLDGFCKAGMLPRALEVLEEMCR 299

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
             + PD +  ++++  LC  GQV   F L E+I + G++  V +  ++ L+ GLC+    
Sbjct: 300 ENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIA--YTSLVDGLCKSGEI 357

Query: 430 VEAAKLARFM 439
            EA KL + M
Sbjct: 358 EEAHKLVKEM 367



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 162/310 (52%), Gaps = 7/310 (2%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
             + N   +A    EA     KM    + PD +  N ++   C+ GD+  A E++ GM L
Sbjct: 173 NTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKL 232

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               PD+ITY S+I   C AG++ +A  + K M    C+ +LV ++ LLDG C+ G + R
Sbjct: 233 AGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS---CSPDLVTFNTLLDGFCKAGMLPR 289

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           ALE+L EM +E  +  P+V+TYT ++   C  G ++ A  +L+ +   G  P+ +  ++L
Sbjct: 290 ALEVLEEMCRE--NILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSL 347

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           + G C  G ++EA++L+ ++   G  +    YSSLV    R   + +A ++ ++M++  +
Sbjct: 348 VDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINM 407

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            P     ++++  L   G + +   L  D+   G++  V +  ++ L+ GLC+ N   EA
Sbjct: 408 VPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVT--YNTLIDGLCKANRVREA 465

Query: 433 AKLARFMLKK 442
             LA  M  +
Sbjct: 466 CDLADEMASR 475



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 153/329 (46%), Gaps = 33/329 (10%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++  E  K   C   +     + +   KA +   A+ VL +M   ++ PD I Y  ++ 
Sbjct: 255 VVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVN 314

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G +  A  L++ +      PD+I Y S++ G C +G +E+A  L K M   GC  
Sbjct: 315 GLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRT 374

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEK------------------EGGDCS------ 268
            +V YS+L+ G CR G++ +A E+L EM                    + G  S      
Sbjct: 375 GVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLI 434

Query: 269 ---------PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
                    P+VVTY ++I   C    ++EA  + D M + GC PN VT+ +++ G C  
Sbjct: 435 SDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRV 494

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +D+A+ L+ ++       +   Y+SL+  L ++ R+ +A  +   M   GV  D  A 
Sbjct: 495 GRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAY 554

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             +I  +  GG+V E   +Y+++   GFL
Sbjct: 555 RKLIVSMSHGGRVAEAMAMYDEMVARGFL 583


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 164/309 (53%), Gaps = 5/309 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC+  R+  EA  +  +M    L PD + Y  +I  +C++G M  A  L   M  +
Sbjct: 399 VICGLCQTGRVM-EADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQM 457

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+I+TY ++  G C  G ++ A  L   M R G   N+  Y++L++G+C+ G++++A
Sbjct: 458 GLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQA 517

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++L+ +ME  G    P+ VTYT+++  +C    M  A  +L +M      P  VT + L+
Sbjct: 518 VKLMKDMEVAG--FHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLM 575

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC+ G L++  +L+  ++  G + +   Y+SL+ +      ++   +++  M A GV 
Sbjct: 576 NGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVV 635

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PDG   +++I+  C    + E + L+ D+   GF  +V S  ++ L+ G  ++   +EA 
Sbjct: 636 PDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSS--YNALIKGFYKRKKFLEAR 693

Query: 434 KLARFMLKK 442
           +L   M ++
Sbjct: 694 ELFEQMRRE 702



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 161/315 (51%), Gaps = 5/315 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC+  ++A EA  VLR+M    + PD +IY  +I  FC+ G++ +A  L   M   
Sbjct: 329 VILLLCKTGKVA-EAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKR 387

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD ITY ++I G C  GR+ +A  LF  M       + V Y+AL+DG C+ G M+ A
Sbjct: 388 KISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEA 447

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  +M + G   +PN+VTYT++    C  G +  A  +L  M   G   N  T ++L+
Sbjct: 448 FSLHNQMLQMG--LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLV 505

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  GN+D+A +L+  +   G       Y++L+    +++ +  A +L  +ML   ++
Sbjct: 506 NGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQ 565

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P  +  +V++   C+ G + +G  L + + + G + +  +  ++ L+   C +N+     
Sbjct: 566 PTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATT--YNSLIKQYCIRNNMRATT 623

Query: 434 KLARFMLKKRIWLQG 448
           ++ R M  K +   G
Sbjct: 624 EIYRGMCAKGVVPDG 638



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 171/345 (49%), Gaps = 10/345 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C++ R+ +   +++ +    +  GC+  V     + N  C+   L    + ++ +M    
Sbjct: 264 CQLGRVVEAHQLLLQM----ELRGCIPDVISYSTVINGYCQVGEL-QRVLKLIEEMQIKG 318

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L+P+   YN VI L C+ G +  A+ +++ M    + PD + Y ++I GFC  G +  A 
Sbjct: 319 LKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAY 378

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF  M++   + + + Y+A++ G+C+ G +  A +L  EM  +     P+ VTYT++I 
Sbjct: 379 RLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCK--RLEPDEVTYTALID 436

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +C +G MKEA  + ++M  +G  PN VT + L  G C  G +D A +L+ ++   G   
Sbjct: 437 GYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLEL 496

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+SLV  L +   + +A KL   M  +G  PD +  + ++   C   +++    L 
Sbjct: 497 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELL 556

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             +       +V +   +VL+ G C      +  KL ++ML+K I
Sbjct: 557 RQMLDRELQPTVVT--FNVLMNGFCMSGMLEDGEKLLKWMLEKGI 599



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 176/349 (50%), Gaps = 7/349 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++  YK+ G     ++  + F +  +A + +EA  +  KM  + L       N  I    
Sbjct: 171 LIYTYKDWGS--DPRVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLS 228

Query: 176 EKGDMIA-ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           E  D I  A ++      + +  +  +Y  +    C  GR+ +A  L   M+  GC  ++
Sbjct: 229 EDLDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDV 288

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           ++YS +++G C++G ++R L+L+ EM+ +G    PN  TY  VI + C  G + EA  +L
Sbjct: 289 ISYSTVINGYCQVGELQRVLKLIEEMQIKG--LKPNPYTYNGVILLLCKTGKVAEAERVL 346

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             M + G AP+ V  +TLI GFC  GN+  AY+L D++           Y++++  L +T
Sbjct: 347 REMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQT 406

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            R+ EA+KLF +M+   ++PD +  + +I   C  G++ E F L+  + ++G   ++ + 
Sbjct: 407 GRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVT- 465

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            ++ L  GLC+      A +L   M +K + L     + +V  L K+G+
Sbjct: 466 -YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGN 513



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 152/332 (45%), Gaps = 39/332 (11%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ V  + PE  +  +T  YN +    C+ G ++ A +L+  M L    PD+I+Y ++I 
Sbjct: 237 ALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVIN 296

Query: 208 GFCNAGRLEDACGLFKVMK-----------------------------------RHGCAA 232
           G+C  G L+    L + M+                                     G A 
Sbjct: 297 GYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAP 356

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           + V Y+ L+DG C+LG++  A  L  EM+K     SP+ +TYT+VI   C  G + EA  
Sbjct: 357 DGVIYTTLIDGFCKLGNVSSAYRLFDEMQKR--KISPDFITYTAVICGLCQTGRVMEADK 414

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M      P+ VT + LI G+C EG + EA+ L ++++  G   +   Y++L   L 
Sbjct: 415 LFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLC 474

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +   +  A +L  +M   G++ +    + ++  LC  G + +   L +D+E  GF    D
Sbjct: 475 KCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF--HPD 532

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +  ++ L+   C+    V A +L R ML + +
Sbjct: 533 AVTYTTLMDAYCKSREMVRAHELLRQMLDREL 564



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 61/114 (53%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L+ M E  + P+   YN++I+ +C + +M A  E+ +GM    + PD  TY  +IKG C
Sbjct: 590 LLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHC 649

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
            A  +++A  L + M   G    + +Y+AL+ G  +      A EL  +M +EG
Sbjct: 650 KARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREG 703


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 163/309 (52%), Gaps = 9/309 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V +  ++   C + R++ +A+ ++ KM E   +PD + YN +I   C+   +  A +  K
Sbjct: 259 VTIGSLVNGFCRRNRVS-DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFK 317

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +    + P+++TY +++ G CN+ R  DA  L   M +     N++ YSALLD   + G
Sbjct: 318 EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNG 377

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  A EL  EM +   D  P++VTY+S+I   C    + EA  + D M + GC  + V+
Sbjct: 378 KVLEAKELFEEMVRMSID--PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVS 435

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI GFC    +++  +L  ++   G VS+   Y++L+    +   + +A++ FS+M 
Sbjct: 436 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 495

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRK 426
             G+ PD    ++++  LC  G++ +   ++ED++K      +D DI  ++ ++ G+C+ 
Sbjct: 496 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQK----REMDLDIVTYTTVIRGMCKT 551

Query: 427 NHSVEAAKL 435
               EA  L
Sbjct: 552 GKVEEAWSL 560



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 160/318 (50%), Gaps = 4/318 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L KM +    PD +   +++  FC +  +  A  L+  M  I   PDI+ Y ++I 
Sbjct: 242 ALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIID 301

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             C   R+ DA   FK ++R G   N+V Y+AL++G+C       A  LL +M K+    
Sbjct: 302 SLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK--KI 359

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +PNV+TY++++  F   G + EA  + + M  +   P+ VT S+LI G C+   +DEA Q
Sbjct: 360 TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 419

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           + D +V+ G ++    Y++L+    + KR+++  KLF +M   G+  + +  + +I+   
Sbjct: 420 MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFF 479

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
             G V +    +  ++  G   S D   +++LL GLC      +A  +   M K+ + L 
Sbjct: 480 QAGDVDKAQEFFSQMDFFGI--SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLD 537

Query: 448 GPYVDKIVEHLKKSGDEE 465
                 ++  + K+G  E
Sbjct: 538 IVTYTTVIRGMCKTGKVE 555



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 150/282 (53%), Gaps = 3/282 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC  +R ++ A  +L  M +  + P+ I Y+ ++  F + G ++ A EL +
Sbjct: 329 VTYTALVNGLCNSSRWSDAAR-LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE 387

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M  + + PDI+TY S+I G C   R+++A  +F +M   GC A++V+Y+ L++G C+  
Sbjct: 388 EMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAK 447

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E  ++L  EM + G     N VTY ++IQ F   G + +A     +M+  G +P+  T
Sbjct: 448 RVEDGMKLFREMSQRG--LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWT 505

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + L+ G C  G L++A  + + +           Y++++  + +T +++EA  LF  + 
Sbjct: 506 YNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLS 565

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             G+KPD +  + M+  LC  G + E   LY  +++ G + +
Sbjct: 566 LKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 607



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 183/374 (48%), Gaps = 14/374 (3%)

Query: 65   VLHRCFPSQSQMGIRFFIWAALQS-SYRHS----SFMYNRACEMSRIKQNPSIIIDVVEA 119
            +L  CF  +SQ+ +   +   +    Y  +    S + N  C   RI +  +++  +   
Sbjct: 735  ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 794

Query: 120  YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
              +   V    ++  +F L  KA   +EAM ++ +M     +PD + Y  V+   C++GD
Sbjct: 795  GYQPNTVTFNTLIHGLF-LHNKA---SEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGD 850

Query: 180  MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
               A  L+  M    L P ++ Y ++I G C    ++DA  LFK M+  G   N+V YS+
Sbjct: 851  TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSS 910

Query: 240  LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
            L+  +C  G    A  LL +M +     +P+V T++++I  F  +G + EA  + D M  
Sbjct: 911  LISCLCNYGRWSDASRLLSDMIER--KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 968

Query: 300  LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
                P+ VT S+LI GFC+   LDEA Q+ + +V+         Y++L+    + KR++E
Sbjct: 969  RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEE 1028

Query: 360  AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
              ++F +M   G+  + +  +++I+ L   G       +++++   G   ++ +  ++ L
Sbjct: 1029 GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT--YNTL 1086

Query: 420  LLGLCRKNHSVEAA 433
            L GLC KN  +E A
Sbjct: 1087 LDGLC-KNGKLEKA 1099



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 149/302 (49%), Gaps = 5/302 (1%)

Query: 138  LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            LC   R + +A  +L  M E  + PD   ++ +I  F ++G ++ A++L   M    + P
Sbjct: 915  LCNYGRWS-DASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 973

Query: 198  DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
             I+TY S+I GFC   RL++A  +F+ M    C  ++V Y+ L+ G C+   +E  +E+ 
Sbjct: 974  SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 1033

Query: 258  GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             EM + G     N VTY  +IQ     G    A  I   M + G  PN +T +TL+ G C
Sbjct: 1034 REMSQRG--LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 1091

Query: 318  VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
              G L++A  + + +       +   Y+ ++  + +  ++++   LF  +   GVKPD +
Sbjct: 1092 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVV 1151

Query: 378  ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
            A + MI   C  G   E   L++++++ G L   +S  ++ L+    R      +A+L +
Sbjct: 1152 AYNTMISGFCRKGSKEEADALFKEMKEDGTLP--NSGCYNTLIRARLRDGDREASAELIK 1209

Query: 438  FM 439
             M
Sbjct: 1210 EM 1211



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 166/340 (48%), Gaps = 12/340 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVE-AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           + N  C  +R+    S++  +VE  YK +     V    +I +LC+  R+ N+A    ++
Sbjct: 264 LVNGFCRRNRVSDAVSLVDKMVEIGYKPD----IVAYNAIIDSLCKTKRV-NDAFDFFKE 318

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           +    +RP+ + Y  ++   C       A  L+  M    + P++ITY +++  F   G+
Sbjct: 319 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 378

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           + +A  LF+ M R     ++V YS+L++G+C    ++ A ++   M  +G  C  +VV+Y
Sbjct: 379 VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG--CLADVVSY 436

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            ++I  FC    +++ + +   M   G   N VT +TLI+GF   G++D+A +   ++  
Sbjct: 437 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 496

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y+ L+  L     L++A  +F  M    +  D +  + +IR +C  G+V E
Sbjct: 497 FGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 556

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN--HSVEA 432
            + L+  +   G    + +  ++ ++ GLC K   H VEA
Sbjct: 557 AWSLFCSLSLKGLKPDIVT--YTTMMSGLCTKGLLHEVEA 594



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 157/346 (45%), Gaps = 25/346 (7%)

Query: 102  EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR 161
            EM + +  PSII    E  K    +  +    V+ +L E+             M    + 
Sbjct: 685  EMVKSRPFPSII----EFSKLLSAIAKMNKFDVVISLGEQ-------------MQNLGIP 727

Query: 162  PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
             +   Y+ +I  FC +  +  A  ++  M  +   P+I+T  S++ G+C++ R+ +A  L
Sbjct: 728  HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL 787

Query: 222  FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
               M   G   N V ++ L+ G+        A+ L+  M  +G  C P++VTY  V+   
Sbjct: 788  VDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG--CQPDLVTYGVVVNGL 845

Query: 282  CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
            C +G    A  +L++ME     P  +  +T+I G C   ++D+A  L  ++   G   + 
Sbjct: 846  CKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNV 905

Query: 342  GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
              YSSL+  L    R  +A +L S M+   + PD    S +I      G+++E   LY++
Sbjct: 906  VTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDE 965

Query: 402  IEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
            + K     S+D  I  +S L+ G C  +   EA ++  FM+ K  +
Sbjct: 966  MVK----RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF 1007



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 148/320 (46%), Gaps = 30/320 (9%)

Query: 97   YNRACEMSRI-------KQNPSIII--DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
            Y R  + SR+       K NP +     +++A+ +EG             L E  +L +E
Sbjct: 918  YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG------------KLVEAEKLYDE 965

Query: 148  AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
                   M +  + P  + Y+++I  FC    +  A ++ + M     +PD++TY ++IK
Sbjct: 966  -------MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIK 1018

Query: 208  GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            GFC   R+E+   +F+ M + G   N V Y+ L+ G+ + G  + A E+  EM  +G   
Sbjct: 1019 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG--V 1076

Query: 268  SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             PN++TY +++   C  G +++A+ + + ++     P   T + +I+G C  G +++ + 
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 1136

Query: 328  LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
            L   +   G       Y++++    R    +EA+ LF +M   G  P+    + +IR   
Sbjct: 1137 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 1196

Query: 388  LGGQVLEGFCLYEDIEKIGF 407
              G       L +++   GF
Sbjct: 1197 RDGDREASAELIKEMRSCGF 1216



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 17/232 (7%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC+  V     + N   KA+   + M + R+M +  L  +T+ YN +I+ F + GD+  
Sbjct: 427 KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDK 486

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E    M    + PDI TY  ++ G C+ G LE A  +F+ M++     ++V Y+ ++ 
Sbjct: 487 AQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 546

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C+ G +E A  L   +  +G    P++VTYT+++   C KG++ E   +  +M+  G 
Sbjct: 547 GMCKTGKVEEAWSLFCSLSLKG--LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 604

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-------SVSSGGCYSSL 347
             N  T+S        +G++  + +LI K+++ G        + SG C  +L
Sbjct: 605 MKNDCTLS--------DGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKAL 648



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L+DA  LF  M +     +++ +S LL  I ++   +  + L  +M+  G     N  T
Sbjct: 675 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG--IPHNHYT 732

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y+ +I  FC +  +  AL +L +M  LG  PN VT+S+L+ G+C    + EA  L+D++ 
Sbjct: 733 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 792

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G   +   +++L+  L    +  EA  L  +M+A G +PD +   V++  LC  G   
Sbjct: 793 VTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 852

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             F L   +E+      V   I++ ++ GLC+  H  +A  L + M  K I
Sbjct: 853 LAFNLLNKMEQGKLEPGV--LIYNTIIDGLCKYKHMDDALNLFKEMETKGI 901



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 148/318 (46%), Gaps = 4/318 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A+ +   M +    P  + +N ++    +         L K M ++ +  D+ T+  +
Sbjct: 170 NDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIV 229

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC   ++  A  +   M + G   + V   +L++G CR   +  A+ L+ +M + G 
Sbjct: 230 INCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG- 288

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P++V Y ++I   C    + +A      +E  G  PN VT + L+ G C      +A
Sbjct: 289 -YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 347

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L+  ++      +   YS+L+   V+  ++ EA++LF +M+   + PD +  S +I  
Sbjct: 348 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 407

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           LCL  ++ E   +++ +   G L+ V S  ++ L+ G C+     +  KL R M ++ + 
Sbjct: 408 LCLHDRIDEANQMFDLMVSKGCLADVVS--YNTLINGFCKAKRVEDGMKLFREMSQRGLV 465

Query: 446 LQGPYVDKIVEHLKKSGD 463
                 + +++   ++GD
Sbjct: 466 SNTVTYNTLIQGFFQAGD 483



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 123/266 (46%), Gaps = 43/266 (16%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L DA  LF  M +     ++V ++ LL  I +L   +  + L  +ME  G     ++ T
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLG--IRNDLYT 225

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           +  VI  FC    +  AL IL +M  LG  P+RVTI +L+ GFC    + +A  L+DK+V
Sbjct: 226 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 285

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC------ 387
             G       Y++++  L +TKR+ +A   F ++   G++P+ +  + ++  LC      
Sbjct: 286 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 345

Query: 388 -----------------------------LGGQVLEGFCLYEDIEKIGFLSSVDSDI--H 416
                                          G+VLE   L+E++ ++    S+D DI  +
Sbjct: 346 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM----SIDPDIVTY 401

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKK 442
           S L+ GLC  +   EA ++   M+ K
Sbjct: 402 SSLINGLCLHDRIDEANQMFDLMVSK 427



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 133/295 (45%), Gaps = 14/295 (4%)

Query: 32   AERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYR 91
            AE+ Y  + K   +I+ ++ T  + ++  C    +H       QM   F +         
Sbjct: 959  AEKLYDEMVKR--SIDPSIVTYSSLINGFC----MHDRLDEAKQM-FEFMVSKHCFPDVV 1011

Query: 92   HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWV 151
              + +    C+  R+++     ++V     + G V +     ++     +A   + A  +
Sbjct: 1012 TYNTLIKGFCKYKRVEEG----MEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 1067

Query: 152  LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
             ++M    + P+ + YN ++   C+ G +  A  + + +    + P I TY  MI+G C 
Sbjct: 1068 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 1127

Query: 212  AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
            AG++ED   LF  +   G   ++VAY+ ++ G CR GS E A  L  EM+++G    PN 
Sbjct: 1128 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG--TLPNS 1185

Query: 272  VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
              Y ++I+     G  + +  ++  M + G A +  TI  L+     +G LD+++
Sbjct: 1186 GCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKSF 1239


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 171/337 (50%), Gaps = 9/337 (2%)

Query: 143 RLA-NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           RLA N    ++R++ E    P+   +N VI   C++G+++ A  L   M  +   PD++T
Sbjct: 177 RLARNRQGGLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVT 236

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y S+I G+   G LE+   L   M++ GCAA++V Y+AL++   + G +E+A    GEM+
Sbjct: 237 YNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMK 296

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           + G     NVVT ++ +  FC +G+++EA+ +  +M   G  PN  T ++L+ G C  G 
Sbjct: 297 RLG--VMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR 354

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           LD+A  L+D++V  G V +   Y+ +V  L +  ++  A+ + S M  +GVK + L  + 
Sbjct: 355 LDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTT 414

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM-- 439
           +I    +         L  +++  G    +D  ++  L+ GLC+     EA  L   M  
Sbjct: 415 LIHGHFMNKNSERALDLLNEMKNKGM--ELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDD 472

Query: 440 --LKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
             L+    +    +D   +  K+S    L+  +P  G
Sbjct: 473 CGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSG 509



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 160/348 (45%), Gaps = 4/348 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +V   ++ GC   V     + N   K     +A     +M    +  + +  +  +  FC
Sbjct: 256 LVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFC 315

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G +  A +L   M +  + P+  TY S++ G C AGRL+DA  L   M   G   N+V
Sbjct: 316 KEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 375

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ ++DG+C+ G +  A ++L  ME+ G     N + YT++I         + AL +L+
Sbjct: 376 TYTVMVDGLCKEGKVAVADDVLSLMERAG--VKANELLYTTLIHGHFMNKNSERALDLLN 433

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+  G   +     TLI G C    LDEA  L+ K+   G   +   Y++++    +  
Sbjct: 434 EMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAG 493

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           +  EA  L  K+  SG++P+ +    +I  LC  G + E    ++ + ++G   +V   +
Sbjct: 494 KESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNV--QV 551

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           ++ L+ G C+     +A  L   M+ K + L       +++   K GD
Sbjct: 552 YTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGD 599



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 131/261 (50%), Gaps = 2/261 (0%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           +  A+ +L +M    +  D  +Y  +I   C+   +  A  L+  M    L P+ + Y +
Sbjct: 425 SERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTT 484

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           ++  F  AG+  +A  L   +   G   N+V Y AL+DG+C+ GS+  A+    +M + G
Sbjct: 485 IMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELG 544

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
            D  PNV  YT++I  FC  G + +A+ +++ M   G + ++V  ++LI G   +G+L  
Sbjct: 545 LD--PNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQG 602

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A+ L  K++  G      CY+  +        ++EA  + S+M+ +G+ PD  A + +IR
Sbjct: 603 AFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIR 662

Query: 385 ELCLGGQVLEGFCLYEDIEKI 405
           +    G + E   L  ++E +
Sbjct: 663 KYQKLGNMEEASSLQNEMESV 683



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 142/282 (50%), Gaps = 4/282 (1%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM-KVIFNLCEKARLA 145
           ++  + +  +Y        + +N    +D++   K +G  + V +   +I+ LC+  +L 
Sbjct: 402 RAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKL- 460

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA  +L KM +  LRP+T+IY  ++  F + G    A  L+  +    L P+++TY ++
Sbjct: 461 DEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCAL 520

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C AG + +A   F  M+  G   N+  Y+ L+DG C++GS+ +A+ L+ EM  +G 
Sbjct: 521 IDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKG- 579

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             S + V YTS+I     +G ++ A  +  +M   G   +    +  I GFC    + EA
Sbjct: 580 -MSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEA 638

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
             ++ +++  G       Y+ L+ +  +   ++EA  L ++M
Sbjct: 639 RGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEM 680



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 61/123 (49%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+ ++ +M +  +  D ++Y ++I    ++GD+  A  L   M    L  D+  Y   
Sbjct: 566 SKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCF 625

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GFCN   +++A G+   M   G   +  AY+ L+    +LG+ME A  L  EME    
Sbjct: 626 ISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMESVLS 685

Query: 266 DCS 268
            C+
Sbjct: 686 SCT 688


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 146/269 (54%), Gaps = 5/269 (1%)

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           RL+      +RK   + LRP  + +N ++  +  +GD+     L   M    + PD+ TY
Sbjct: 153 RLSQSVFDAIRK---WGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTY 209

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
             +I G C   ++++A  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  
Sbjct: 210 SVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLS 269

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
           +    SP+++TY ++I   C KG +K+A  +++ M   G  P+++T +TLI G C +G+L
Sbjct: 270 QS--LSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDL 327

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           + A++   +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++
Sbjct: 328 ETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMI 387

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           I E C  G V  G  L +++++ G + SV
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGHVPSV 416



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 15/274 (5%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  +  +F  +++ G   ++V+++ L++G  R G +++  
Sbjct: 132 YPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGF 191

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M EA  +   M   G  PN VT +TLI 
Sbjct: 192 RLKSAMHASG--VQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLID 249

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++         Y++L+  L +   LK+A  L ++M   G+KP
Sbjct: 250 GHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKP 309

Query: 375 DGLACSVMIRELCLGGQVLEGF-----CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           D +  + +I   C  G +   F      + E+I        +D   ++ L+ GLC++  S
Sbjct: 310 DKITYTTLIDGSCKDGDLETAFEYRKRMIEENIR-------LDDVAYTALISGLCQEGRS 362

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V+A K+ R ML   +         I+    K GD
Sbjct: 363 VDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGD 396



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++ +   +  ++++    +G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDEANELFXEMLD----KGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           ++ + AM + ++M    L PD I YN +I   C+KGD+  A  L+  M +  L PD ITY
Sbjct: 256 KV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M       + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P+  TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 418



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A    G    V    V+ N LC+++++ +EA  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMHASGVQPDVYTYSVLINGLCKESKM-DEANELFXEMLDKGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 GKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M +E  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGSCKDGDLETAFEYRKRMIEE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            ++G  P+  T + +I  FC +G++    +L+ ++   G V S
Sbjct: 373 LSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPS 415



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 116/244 (47%), Gaps = 8/244 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               KE  +C    ++  +  ++  FC +G ++ +  + D +   G  P+ V+ +TL+ G
Sbjct: 121 WGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +  +G+LD+ ++L   + A G       YS L+  L +  ++ EA +LF +ML  G+ P+
Sbjct: 181 YIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 241 GVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQARNL 298

Query: 436 ARFM 439
              M
Sbjct: 299 INEM 302


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 146/264 (55%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +L+DA  LF  M  +G   N V+++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C  G +K+A  +++ M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLMKEMQRDGYVPSV 416



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++     G V  SV    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKLDDANELFDEMLD----NGLVPNSVSFTTLIDGHCKDG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+ GD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     ++  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 125/270 (46%), Gaps = 8/270 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ K H           +L+ + +L    +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC +G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 121 WGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+L+E ++L + + A G       YS L+  L +  +L +A +LF +ML +G+ P+
Sbjct: 181 YIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            ++ + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+     +A  L
Sbjct: 241 SVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKNGDLKQAQDL 298

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
              M  K +         +++   K GD E
Sbjct: 299 INEMSMKGLKPDKITYTTLIDGSCKEGDLE 328


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 149/294 (50%), Gaps = 16/294 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC  +++  +A  + ++M    + PD   Y  ++  FC+ G +  A      M  
Sbjct: 127 KVIGYLCNASKV-EKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQ 185

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P+++TY ++I  +    +L  A  +F++M  +GC  N+V Y+AL+DG C+ G  E+
Sbjct: 186 DGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEK 245

Query: 253 ALELLGEMEKEGGDC---------------SPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           A ++   M+ +  D                 PNVVTY +++   C    +KEA  +L+ M
Sbjct: 246 ACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETM 305

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
              GC PN++    LI GFC  G LDEA ++  K++  G   +   YSSL+ +L + KRL
Sbjct: 306 SLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRL 365

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
             A K+ +KML +   P+ +  + M+  LC  G+  E + L   +E+ G   +V
Sbjct: 366 DLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNV 419



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 114/390 (29%), Positives = 184/390 (47%), Gaps = 49/390 (12%)

Query: 99  RACEM-SRIKQNPSIIIDV------VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWV 151
           +AC++ +R+K +   I DV      V++  +E  VV+   +  +  LC KA    EA  +
Sbjct: 245 KACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGAL--VDGLC-KAHKVKEARDL 301

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           L  M      P+ IIY+ +I  FC+ G +  A E+   M      P++ TY S+I     
Sbjct: 302 LETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFK 361

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
             RL+ A  +   M  + CA N+V Y+ ++DG+C++G  + A  L+  ME++G  C PNV
Sbjct: 362 DKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKG--CYPNV 419

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID- 330
           VTYT++I  F   G +   L +L  M + GCAPN +T   LI   C  G LD+A++L++ 
Sbjct: 420 VTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEE 479

Query: 331 --------------KVVAG------------------GSVSSGGCYSSLVVELVRTKRLK 358
                         KV+ G                  GSV     Y  L+   ++  RL+
Sbjct: 480 MKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLE 539

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
            A +L  ++ +          S +I  L L  +V + F LY D+ + GF+  +   +   
Sbjct: 540 MALELHEELSSFSAAYQNTYVS-LIESLTLACKVDKAFKLYSDMTRRGFVPELSMLV--C 596

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRI-WLQ 447
           L+ GL R     EA +L+  + +  I W+Q
Sbjct: 597 LIKGLLRVGKWEEALQLSDSICQMDIHWVQ 626



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 158/332 (47%), Gaps = 24/332 (7%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
           Y +++ + +R C++  I+Q  +      +  +++GC  +V     + +   K R  + A 
Sbjct: 158 YTYTTLL-DRFCKVGLIEQARNWF----DEMQQDGCAPNVVTYTALIHAYLKTRKLSRAN 212

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL-------IDLY------ 196
            +   M      P+ + Y  +I   C+ G+   A ++   M         +D+Y      
Sbjct: 213 EIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDS 272

Query: 197 ----PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P+++TY +++ G C A ++++A  L + M   GC  N + Y AL+DG C++G ++ 
Sbjct: 273 ELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDE 332

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A E+  +M   G  CSPNV TY+S+I        +  AL +L +M    CAPN V  + +
Sbjct: 333 AQEVFTKMLGHG--CSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEM 390

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           + G C  G  DEAY+L+  +   G   +   Y++++    +  R+    +L   M + G 
Sbjct: 391 VDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGC 450

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
            P+ +   V+I   C  G + +   L E++++
Sbjct: 451 APNFITYRVLINHCCAAGLLDDAHKLLEEMKQ 482



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 131/309 (42%), Gaps = 66/309 (21%)

Query: 148 AMWVLRKMPEFDLRPDTIIYN--------------------------------------- 168
           A  +L+KM     +P  ++YN                                       
Sbjct: 30  AYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVIGLAERAYNEMLEMGVVLNKVN 89

Query: 169 --NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
             N  R  C  G    A  +++ M      PD  TY  +I   CNA ++E A  LF+ MK
Sbjct: 90  VCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMK 149

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           R+G   ++  Y+ LLD  C++G +E+A     EM+++G  C+PNVVTYT++I  +     
Sbjct: 150 RNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDG--CAPNVVTYTALIHAYLKTRK 207

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA--------------------Y 326
           +  A  I + M + GC PN VT + LI G C  G  ++A                    +
Sbjct: 208 LSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYF 267

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +++D  +   +V +   Y +LV  L +  ++KEA  L   M   G +P+ +    +I   
Sbjct: 268 RIVDSELKEPNVVT---YGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGF 324

Query: 387 CLGGQVLEG 395
           C  G++ E 
Sbjct: 325 CKVGKLDEA 333



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 137/299 (45%), Gaps = 23/299 (7%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE--DAC 219
           P  +I+N+++  +C  GD   A +L+K M +    P  + Y  +I G C+   L   +  
Sbjct: 9   PSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVI 68

Query: 220 GL----FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           GL    +  M   G   N V        +C +G  E+A  ++ EM  +G    P+  TY+
Sbjct: 69  GLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGF--IPDSSTYS 126

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            VI   C    +++A  +   M+  G  P+  T +TL+  FC  G +++A    D++   
Sbjct: 127 KVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQD 186

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   Y++L+   ++T++L  A ++F  ML++G  P+ +  + +I   C  G+  + 
Sbjct: 187 GCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKA 246

Query: 396 FCLYE-------DIEKIG-FLSSVDSDI-------HSVLLLGLCRKNHSVEAAKLARFM 439
             +Y        DI  +  +   VDS++       +  L+ GLC+ +   EA  L   M
Sbjct: 247 CQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETM 305



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 8/194 (4%)

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
           +M   GC  + + +++L+   CR G    A +LL +M   G    P  V Y  +I   C 
Sbjct: 1   MMITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGY--QPGYVVYNILIGGICS 58

Query: 284 KGMMK--EALGILDR----MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
              +   E +G+ +R    M  +G   N+V +    +  C  G  ++AY +I ++++ G 
Sbjct: 59  TEDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGF 118

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
           +     YS ++  L    ++++A +LF +M  +G+ PD    + ++   C  G + +   
Sbjct: 119 IPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARN 178

Query: 398 LYEDIEKIGFLSSV 411
            ++++++ G   +V
Sbjct: 179 WFDEMQQDGCAPNV 192



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 8/150 (5%)

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE- 359
           GC P+ +  ++L+  +C  G+   AY+L+ K+V  G       Y+ L+  +  T+ L   
Sbjct: 6   GCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSM 65

Query: 360 -----AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
                AE+ +++ML  GV  + +      R LC  G+  + + +  ++   GF+   DS 
Sbjct: 66  EVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIP--DSS 123

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            +S ++  LC  +   +A +L + M +  I
Sbjct: 124 TYSKVIGYLCNASKVEKAFQLFQEMKRNGI 153


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 149/287 (51%), Gaps = 39/287 (13%)

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           RLA++A+ +LR M    +R D + Y  +IR  C+  ++  A ELM  M    + P+++ Y
Sbjct: 129 RLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVY 188

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            S+++G+C +GR ED   +F  M   G   ++V Y+ L+D +C++G  ++A  ++  M +
Sbjct: 189 SSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVR 248

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    PNVVTY  +I   C +G +KEA+G+L +M   G AP+ VT +TLIKG      +
Sbjct: 249 RG--LEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEM 306

Query: 323 DEAYQLIDKVVAG-----------GSVSSGGC--------------------------YS 345
           DEA  L++++V G            SV  G C                          Y+
Sbjct: 307 DEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYN 366

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            L+  L+R  ++++A +L  +M + G++PD    S++I+  C   QV
Sbjct: 367 LLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQV 413



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 172/365 (47%), Gaps = 7/365 (1%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+ + + +   ++ ++ E+  E   VV   +++     C+  R  +    V  +M E  +
Sbjct: 161 CDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ---GYCKSGRWEDVGK-VFVEMSEKGI 216

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD ++Y  +I   C+ G    A  +M  M    L P+++TY  +I   C  G +++A G
Sbjct: 217 EPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIG 276

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + K M   G A ++V Y+ L+ G+  +  M+ A+ LL EM +      PNVVT+ SVIQ 
Sbjct: 277 VLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQG 336

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G M++A  +   ME  GC  N VT + LI G      + +A +L+D++ + G    
Sbjct: 337 LCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPD 396

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              YS L+    +  ++  AE L S M   G++P+      ++  +C  G +     L+ 
Sbjct: 397 SFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFN 456

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           +++   F   +D   +S ++ G C+      A +L + ++ + +         ++    K
Sbjct: 457 EMDN-NF--PLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAK 513

Query: 461 SGDEE 465
           SGD E
Sbjct: 514 SGDME 518



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 156/313 (49%), Gaps = 10/313 (3%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKM---PEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           +V    V+  LC +    + A  +LR M   P    RP+ + Y  ++R  C       A 
Sbjct: 77  AVSYNTVLTALCRRGH-HDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L++ M    +  D++TY ++I+G C+A  ++ A  L   M   G   N+V YS+LL G 
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G  E   ++  EM ++G    P+VV YT +I   C  G  K+A G++D M   G  P
Sbjct: 196 CKSGRWEDVGKVFVEMSEKG--IEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP 253

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N VT + LI   C EG++ EA  ++ K+   G       Y++L+  L     + EA  L 
Sbjct: 254 NVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLL 313

Query: 365 SKMLASG--VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
            +M+     VKP+ +  + +I+ LC  G++ + F +   +E+ G +  V+   +++L+ G
Sbjct: 314 EEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCM--VNLVTYNLLIGG 371

Query: 423 LCRKNHSVEAAKL 435
           L R +   +A +L
Sbjct: 372 LLRVHKVRKAMEL 384



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 139/274 (50%), Gaps = 10/274 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++ R++Q       V    +E GC+V++    ++     +     +AM ++ +M    L
Sbjct: 338 CDIGRMRQ----AFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGL 393

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD+  Y+ +I+ FC+   +  A++L+  M    + P++  Y+ ++   C  G +E A  
Sbjct: 394 EPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARN 453

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M  +    ++VAYS ++ G C+ G ++ A ELL  +  EG   +P+ VTY+ VI +
Sbjct: 454 LFNEMD-NNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEG--LTPDAVTYSIVINM 510

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           F   G M+ A G+L +M A G  P+     +LI+G+  +G +++  +LI +++       
Sbjct: 511 FAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALD 570

Query: 341 GGCYSSLVVELVRT---KRLKEAEKLFSKMLASG 371
               S+L   LV +   K L ++   FS  ++ G
Sbjct: 571 SKIISTLSTSLVASNEGKALLQSLPDFSAEISKG 604



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 155/351 (44%), Gaps = 44/351 (12%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++     G   +V    V+ N   K     EA+ VL+KM E  + PD + YN +I+   
Sbjct: 242 VMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLS 301

Query: 176 EKGDMIAA----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           +  +M  A    +E+++G  ++   P+++T+ S+I+G C+ GR+  A  +  +M+  GC 
Sbjct: 302 DVLEMDEAMWLLEEMVRGKNIVK--PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCM 359

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            NLV Y+ L+ G+ R+  + +A+EL+ EM   G    P+  TY+ +I+ FC    +  A 
Sbjct: 360 VNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLG--LEPDSFTYSILIKGFCKMWQVDRAE 417

Query: 292 GILDRMEALGCAP----------------------------------NRVTISTLIKGFC 317
            +L  M   G  P                                  + V  ST+I G C
Sbjct: 418 DLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGAC 477

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+L  A +L+  +V  G       YS ++    ++  ++ A  +  +M ASG  PD  
Sbjct: 478 KAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVA 537

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
               +I+     G++ +   L    E I    ++DS I S L   L   N 
Sbjct: 538 VFDSLIQGYSTKGEINKVLELIR--EMITKNIALDSKIISTLSTSLVASNE 586



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 112/211 (53%), Gaps = 3/211 (1%)

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGD-CSPNVVTYTSVIQIFCGKGMMKEALGI 293
           V+Y+ +L  +CR G  +RA  LL  M  E    C PN V+YT +++  C   +  +A+G+
Sbjct: 78  VSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGL 137

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L  M + G   + VT  TLI+G C    +D+A +L+ ++   G   +   YSSL+    +
Sbjct: 138 LRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCK 197

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           + R ++  K+F +M   G++PD +  + +I  LC  G+  +   + + + + G   +V +
Sbjct: 198 SGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVT 257

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             ++VL+  +C++    EA  + + M +K +
Sbjct: 258 --YNVLINCMCKEGSVKEAIGVLKKMSEKGV 286


>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
          Length = 598

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 203/434 (46%), Gaps = 31/434 (7%)

Query: 11  SSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEK---TLATVKAKLDSTCVIEVLH 67
           S +   KNSK    +   AS  E+ Y  L+K  + + K    L     +L    +  VL+
Sbjct: 59  SHNDRTKNSK----YDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLN 114

Query: 68  RCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCV 126
           RC      +G RFF+WAA Q  Y HS  +Y    + +S+++Q  ++   + E  KE   +
Sbjct: 115 RC-GDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQL 173

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           +  ++  V+      A +  +A+ VL +MP+F   PD  ++  ++   C+ G +  A +L
Sbjct: 174 IEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKL 233

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
            + M +                    G++ +A  +   M   G   ++V Y+ LL G   
Sbjct: 234 FEDMRM------------------RVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYAN 275

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G M  A +LL +M + G +  PN   YT +IQ  C    M+EA+ +   ME   C  + 
Sbjct: 276 AGKMADAYDLLRDMRRRGFE--PNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADV 333

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT + L+ GFC  G +D+ Y ++D ++  G + S   Y  ++V   + +  +E  +L  K
Sbjct: 334 VTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEK 393

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M      PD    +V+IR  C  G+V E   L+ ++E+ G    VD+ +  +++ GL  +
Sbjct: 394 MRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFV--IMINGLASQ 451

Query: 427 NHSVEAAKLARFML 440
              +EA+   + ML
Sbjct: 452 GCLLEASDHFKEML 465



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 14/193 (7%)

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
           EK     E + ++ KM + +  PD  IYN VIRL C+ G++  A  L   M    L P +
Sbjct: 379 EKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGV 438

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            T+V MI G  + G L +A   FK M              LL+ + +   +E A ++   
Sbjct: 439 DTFVIMINGLASQGCLLEASDHFKEM-------------LLLNTVLKDKKLEMAKDVWSC 485

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           +  +G  C  NV+++T  I     KG  KEA      M  +   P   T + L+KG    
Sbjct: 486 ITSKGA-CELNVLSWTIWIHALFSKGYEKEACSYCIEMIEMDFMPQPDTFAKLMKGLKKL 544

Query: 320 GNLDEAYQLIDKV 332
            N + A ++ +KV
Sbjct: 545 YNREFAGEITEKV 557


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 157/310 (50%), Gaps = 8/310 (2%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           K+I NLC + R  ++A  VLR         D   YN ++  +C  G + AA  L+  M  
Sbjct: 75  KLIRNLCRRGR-TSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM-- 131

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             + PD  TY  +I+G C+ GR+ DA  L   M R  C  ++V Y+ LL+ +C+     +
Sbjct: 132 -PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQ 190

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+++L EM  +G  C+PN+VTY  +I   C +  + +A  IL+R+ + G  P+ V+ +T+
Sbjct: 191 AMKVLDEMRAKG--CTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTV 248

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +KG C     ++   L  ++V    V +   +  LV    R   ++ A ++  +M   G 
Sbjct: 249 LKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGC 308

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
             +   C+++I  +C  G+V + F    ++   G   S D+  ++ +L GLCR     +A
Sbjct: 309 TANTTLCNIVINSICKQGRVDDAFEFLNNMGSYG--CSPDTISYTTVLKGLCRAGRWEDA 366

Query: 433 AKLARFMLKK 442
            +L   M++K
Sbjct: 367 KELLNEMVRK 376



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 150/305 (49%), Gaps = 32/305 (10%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I+V++   E GC  +  +  ++ N +C++ R+ ++A   L  M  +   PDTI Y  V++
Sbjct: 297 IEVLDRMSEHGCTANTTLCNIVINSICKQGRV-DDAFEFLNNMGSYGCSPDTISYTTVLK 355

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G    A EL+  M   +  P+ +T+ + I   C  G ++ A  L + M  +GC+ 
Sbjct: 356 GLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSV 415

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG---------------------------- 264
            +V Y+AL++G C  G ++ ALEL   +  E                             
Sbjct: 416 GIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEM 475

Query: 265 --GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
              DC  NVVT+  ++  FC KG ++EA+ ++ +M   GC PN +T +TL+ G   + N 
Sbjct: 476 MQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNS 535

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           +EA +L+  +V+ G       YSS+V  L R  R++EA ++F  +   G++P  +  + +
Sbjct: 536 EEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKI 595

Query: 383 IRELC 387
           +  LC
Sbjct: 596 LSALC 600



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 160/342 (46%), Gaps = 11/342 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+    S++ D++       C  SV    V+     K+    +AM VL +M     
Sbjct: 148 CDRGRVGDALSLLDDMLR----RECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGC 203

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + YN +I   C +  +  A +++  +      PD ++Y +++KG C A R ED   
Sbjct: 204 TPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEV 263

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M  + C  N V +  L+   CR G +ERA+E+L  M + G  C+ N      VI  
Sbjct: 264 LFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHG--CTANTTLCNIVINS 321

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G + +A   L+ M + GC+P+ ++ +T++KG C  G  ++A +L++++V      +
Sbjct: 322 ICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPN 381

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              +++ +  L +   + +A  L  +M   G     +  + ++   C+ G+V     L+ 
Sbjct: 382 EVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFN 441

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +         ++  ++ LL GLC       AA+L   M++ 
Sbjct: 442 SLP-----CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQN 478



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 150/302 (49%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ R+  +A+ +L  M   + +P  + Y  ++   C+      A +++  M   
Sbjct: 143 LIRGLCDRGRVG-DALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAK 201

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+I+TY  +I G C   R++DA  +   +  +G   + V+Y+ +L G+C     E  
Sbjct: 202 GCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 261

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  EM +   +C PN VT+  +++ FC  GM++ A+ +LDRM   GC  N    + +I
Sbjct: 262 EVLFCEMVE--NNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVI 319

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C +G +D+A++ ++ + + G       Y++++  L R  R ++A++L ++M+     
Sbjct: 320 NSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCP 379

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  +  I  LC  G + +   L E + + G   SV    ++ L+ G C +     A 
Sbjct: 380 PNEVTFNTFICILCQKGLIDQAILLIEQMPEYG--CSVGIVTYNALVNGFCVQGRVDSAL 437

Query: 434 KL 435
           +L
Sbjct: 438 EL 439



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 138/271 (50%), Gaps = 7/271 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD  +   +IR  C +G    A  +++         D+  Y +++ G+C  GRL+ A  L
Sbjct: 68  PDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRL 127

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M       +   Y+ L+ G+C  G +  AL LL +M +   +C P+VVTYT +++  
Sbjct: 128 IASMP---VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRR--ECQPSVVTYTVLLEAV 182

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C      +A+ +LD M A GC PN VT + +I G C E  +D+A Q+++++ + G     
Sbjct: 183 CKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDT 242

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++++  L   KR ++ E LF +M+ +   P+ +   +++R  C GG V     + + 
Sbjct: 243 VSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDR 302

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           + + G   + ++ + ++++  +C++    +A
Sbjct: 303 MSEHG--CTANTTLCNIVINSICKQGRVDDA 331



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 146/290 (50%), Gaps = 12/290 (4%)

Query: 133 KVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V FN     LC+K  L ++A+ ++ +MPE+      + YN ++  FC +G + +A EL 
Sbjct: 382 EVTFNTFICILCQKG-LIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELF 440

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             +      P+ ITY +++ G C+A RL+ A  L   M ++ C  N+V ++ L+   C+ 
Sbjct: 441 NSL---PCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQK 497

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +E A+EL+ +M + G  C+PN++T+ +++         +EAL +L  + + G + + +
Sbjct: 498 GFVEEAIELVQQMMEHG--CTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTI 555

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S+++     E  ++EA Q+   V   G       Y+ ++  L +      A   F+ M
Sbjct: 556 TYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHM 615

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS-SVDSDIH 416
           +++   P+     ++I  L   G + E   +  ++   G LS S+  D H
Sbjct: 616 VSNSCMPNESTYVILIEGLAREGLLKEARYVLSELCSRGVLSKSLIEDRH 665



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 4/181 (2%)

Query: 122 EEGCVVSVKMMKVIFNL-CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +  C ++V    V+ +  C+K     EA+ ++++M E    P+ I +N ++    E  + 
Sbjct: 477 QNDCPLNVVTFNVLVSFFCQKG-FVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNS 535

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A EL+ G+    +  D ITY S++       R+E+A  +F  ++  G     V Y+ +
Sbjct: 536 EEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKI 595

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           L  +C+    +RA++    M      C PN  TY  +I+    +G++KEA  +L  + + 
Sbjct: 596 LSALCKRCETDRAIDFFAHMVSNS--CMPNESTYVILIEGLAREGLLKEARYVLSELCSR 653

Query: 301 G 301
           G
Sbjct: 654 G 654



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 5/168 (2%)

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +P+V   T +I+  C +G   +A  +L   E  G   +    +TL+ G+C  G LD A +
Sbjct: 67  APDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARR 126

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           LI  +       +   Y+ L+  L    R+ +A  L   ML    +P  +  +V++  +C
Sbjct: 127 LIASMPVPPDAYT---YTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVC 183

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
                 +   + +++   G   ++ +  ++V++ G+CR++   +A ++
Sbjct: 184 KSSGFGQAMKVLDEMRAKGCTPNIVT--YNVIINGMCREDRVDDARQI 229


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 166/348 (47%), Gaps = 42/348 (12%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           CE  R+ +   ++ D + AY     V    +++    LC+K+ +  EAM  LR+M     
Sbjct: 235 CEAGRLPEAVRLV-DGMRAYAVPDVVTYNTLIR---GLCKKS-MPQEAMHYLRRMMNQGC 289

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   YN +I  +C+   +  A EL+K        PD +TY S+I G C  G +E A  
Sbjct: 290 LPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALE 349

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF   +  G   ++V Y++L+ G+C  G +  AL+++ EM +EG  C P++ TY  VI  
Sbjct: 350 LFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEG--CHPDIQTYNIVING 407

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV-------- 332
            C  G + +A  +++     G  P+  T +TLI G+C    LD A QL++++        
Sbjct: 408 LCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPD 467

Query: 333 -VAGGSVSSGGC--------------------------YSSLVVELVRTKRLKEAEKLFS 365
            +   SV +G C                          Y+ L+    R+ +++EA K+  
Sbjct: 468 TITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIV 527

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           KM   G+ PD ++ + +I   C  G +   + L++ +E+ G+ ++ D+
Sbjct: 528 KMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADT 575



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 138/267 (51%), Gaps = 2/267 (0%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
            A+ V+ +M E    PD   YN VI   C+ G++  A  +M    +    PD+ T+ ++I
Sbjct: 381 HALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLI 440

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C   +L+ A  L + M  +G A + + Y+++L+G+C+ G +    E   EM  +G  
Sbjct: 441 DGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG-- 498

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PN +TY  +I+ FC    M+EA  ++ +M   G  P+ V+ +TLI GFC  G+L+ AY
Sbjct: 499 CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAY 558

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L  K+   G  ++   +++L+        +  AEK+F +ML+ G + D     V+I   
Sbjct: 559 LLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGS 618

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           C    V   +    ++ K GF+ S+ +
Sbjct: 619 CKTANVDRAYMHLVEMIKKGFIPSMST 645



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 158/339 (46%), Gaps = 24/339 (7%)

Query: 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV------------IFNLCEKARLANE 147
           AC  +    N  +   V  AY ++   V V+M+              + + C  AR  + 
Sbjct: 83  ACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTAR-PHI 141

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +LR +P        + Y  V+      G    A +L   M    ++P++  +  ++ 
Sbjct: 142 ALRLLRALPH----RGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLH 197

Query: 208 GFCNAGR-LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
             C  G  LE    L KV++R G + NL  Y+  + G+C  G +  A+ L+  M      
Sbjct: 198 ALCKRGDVLEAGLLLGKVIQR-GMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA-- 254

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+VVTY ++I+  C K M +EA+  L RM   GC P+  T +T+I G+C    + EA 
Sbjct: 255 -VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEAT 313

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+   V  G V     Y SL+  L     ++ A +LF++  A G+KPD +  + +++ L
Sbjct: 314 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGL 373

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           CL G +L    +  ++ + G     D   +++++ GLC+
Sbjct: 374 CLQGLILHALQVMNEMAEEG--CHPDIQTYNIVINGLCK 410



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 117/293 (39%), Gaps = 41/293 (13%)

Query: 85  ALQSSYRHSSFMYNRACE--MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142
           A+   Y    F +N   +    R+K + ++   +VE   E G          + N   KA
Sbjct: 424 AIMKGYLPDVFTFNTLIDGYCKRLKLDSAL--QLVERMWEYGIAPDTITYNSVLNGLCKA 481

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
              NE     ++M      P+ I YN +I  FC    M  A +++  M    L+PD +++
Sbjct: 482 GKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSF 541

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I GFC  G LE A  LF+ ++  G       YSA  D                    
Sbjct: 542 NTLIYGFCRNGDLEGAYLLFQKLEEKG-------YSATAD-------------------- 574

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
                     T+ ++I  F GK  M  A  I D M + G   +  T   LI G C   N+
Sbjct: 575 ----------TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANV 624

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           D AY  + +++  G + S   +  ++  L    R+ +A  +   M+  GV P+
Sbjct: 625 DRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 677



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 112/241 (46%), Gaps = 9/241 (3%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           YV+ I+ +  AGRL DA   F+ M    C     AY+A++D +      ++A ++   M 
Sbjct: 56  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRML 115

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G   SP++ T+T  ++ FC       AL +L  +   G     V   T++ G    G+
Sbjct: 116 AAG--VSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGA----VAYCTVVCGLYAHGH 169

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
             +A QL D+++      +   ++ ++  L +   + EA  L  K++  G+  +    ++
Sbjct: 170 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 229

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            IR LC  G++ E   L   ++ +   +  D   ++ L+ GLC+K+   EA    R M+ 
Sbjct: 230 WIRGLCEAGRLPEAVRL---VDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMN 286

Query: 442 K 442
           +
Sbjct: 287 Q 287



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 6/151 (3%)

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I+ +   G L +A    +++       +   Y++++  LV      +A K++ +MLA+GV
Sbjct: 60  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 119

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD    ++ +R  CL  +      L   +   G ++      +  ++ GL    H+ +A
Sbjct: 120 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVA------YCTVVCGLYAHGHTHDA 173

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            +L   ML   ++      +K++  L K GD
Sbjct: 174 RQLFDQMLHTHVFPNLAAFNKVLHALCKRGD 204


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 168/341 (49%), Gaps = 11/341 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C M R+ +    +     A  E G +V      +I +  C+K  + N  +    KM E  
Sbjct: 235 CNMGRVLEAERWL----NAMVERGFIVDNATCTLIIDAFCQKGYV-NRVVGYFWKMVEMG 289

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L P+ I +  +I   C++G +  A EL++ M      P++ T+ ++I G C  G  E A 
Sbjct: 290 LAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAF 349

Query: 220 GLF-KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
            LF K+++  G   N+  Y+A+++G C+   + RA  LL  M+++G    PN  TYT++I
Sbjct: 350 RLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQG--LVPNTNTYTTLI 407

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C  G    A  ++D M   G +PN  T + +I G C +G+LDEAY+L++KV   G  
Sbjct: 408 DGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQ 467

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
           + G  Y+ L+    R      +   F+KML  G  PD  + + +I   C   Q+ E   L
Sbjct: 468 ADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERL 527

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +E+   +G + +     ++ ++ G CR  ++  A KL + M
Sbjct: 528 FEEAVSLGLIPT--KKTYTSMICGYCRYGNTSLAVKLFQRM 566



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 149/309 (48%), Gaps = 6/309 (1%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           VS K+M V    C   R+     W L  M E     D      +I  FC+KG +      
Sbjct: 225 VSFKLMVVA--CCNMGRVLEAERW-LNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGY 281

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
              M  + L P++I + ++I G C  G ++ A  L + M R G   N+  ++ L+DG+C+
Sbjct: 282 FWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCK 341

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G  E+A  L  ++ +  G   PNV TYT++I  +C +  +  A  +L RM+  G  PN 
Sbjct: 342 KGWTEKAFRLFLKLVRSDG-YKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNT 400

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
            T +TLI G C  GN   AY+L+D +   G   +   Y++++  L +   L EA +L +K
Sbjct: 401 NTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNK 460

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +   G++ DG+  ++++   C           +  + K+GF   + S  ++ L+   CR+
Sbjct: 461 VSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHS--YTTLISTFCRQ 518

Query: 427 NHSVEAAKL 435
               E+ +L
Sbjct: 519 KQMKESERL 527



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 151/319 (47%), Gaps = 14/319 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C++ +L N A  +L +M E  L P+T  Y  +I   C+ G+ + A ELM  MG  
Sbjct: 371 MINGYCKEDKL-NRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKE 429

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+I TY ++I G C  G L++A  L   +  HG  A+ V Y+ L+   CR     R+
Sbjct: 430 GFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRS 489

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L    +M K G   +P++ +YT++I  FC +  MKE+  + +   +LG  P + T +++I
Sbjct: 490 LVFFNKMLKVG--FTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMI 547

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C  GN   A +L  ++   G       Y +L+  L +  +L +A  L+  M+  G+ 
Sbjct: 548 CGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLS 607

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS-----------DIHSVLLLG 422
           P  +    +  E C          + + +EK  ++ +V++           D+ ++    
Sbjct: 608 PCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFFHK 667

Query: 423 LCRKNHSVEAAKLARFMLK 441
           L  K  +V    L  FM K
Sbjct: 668 LLDKEPNVNRVTLLGFMNK 686


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 154/301 (51%), Gaps = 5/301 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           CE   L +++  +L  + +  L P+ +IY  +I   C+ GD+  A      MG + L  +
Sbjct: 173 CENGNL-DKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVAN 231

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
             T+  +I G    G  +D   LF+ MK +G   NL  Y+ L++  C  G + RA +L  
Sbjct: 232 QYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFD 291

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM + G     NVVTY ++I   C +  + EA  ++D+M+    +PN +T +TLI GFC 
Sbjct: 292 EMRERG--VEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCD 349

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            GNLD+A  L+D++ + G   S   Y+ L+    +    K    L  +M   G+ P  + 
Sbjct: 350 VGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVT 409

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
           C+V+I       ++ + F +Y  +EK G +   D  ++ VL+ GLC K +  E++KL R 
Sbjct: 410 CTVLIDAYVRLQEMEKAFQIYSSMEKFGLVP--DVYVYGVLIHGLCMKGNMKESSKLFRS 467

Query: 439 M 439
           M
Sbjct: 468 M 468



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 157/304 (51%), Gaps = 12/304 (3%)

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
           E+ARL         KM E  L  +   +  +I    +KG      +L + M +  L+P++
Sbjct: 214 ERARL------FFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNL 267

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            TY  ++  +C  G++  A  LF  M+  G  AN+V Y+ L+ G+CR   +  A +L+ +
Sbjct: 268 YTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQ 327

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M+K     SPN++TY ++I  FC  G + +A  +LD++++ G +P+ VT + LI+G+   
Sbjct: 328 MKKAA--VSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKA 385

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           GN      L  ++   G   S    + L+   VR + +++A +++S M   G+ PD    
Sbjct: 386 GNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVY 445

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD-IHSVLLLGLCRKNHSVEAAKLARF 438
            V+I  LC+ G + E   L+     +G +    SD I++ ++ G C++++S  A +L R 
Sbjct: 446 GVLIHGLCMKGNMKESSKLFRS---MGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLRE 502

Query: 439 MLKK 442
           M  K
Sbjct: 503 MEAK 506



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 135/262 (51%), Gaps = 4/262 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
            D+ +  +E G   +V     +I  +C + R+  EA  ++ +M +  + P+ I YN +I 
Sbjct: 287 FDLFDEMRERGVEANVVTYNTLIGGMCREERVW-EAEKLVDQMKKAAVSPNLITYNTLIG 345

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            FC+ G++  A  L+  +    L P ++TY  +I+G+  AG  +    L + M+  G + 
Sbjct: 346 GFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISP 405

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           + V  + L+D   RL  ME+A ++   MEK G    P+V  Y  +I   C KG MKE+  
Sbjct: 406 SKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFG--LVPDVYVYGVLIHGLCMKGNMKESSK 463

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M  +   P+ V  +T+I G+C E N   A +L+ ++ A G V +   YSS++  L 
Sbjct: 464 LFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLC 523

Query: 353 RTKRLKEAEKLFSKMLASGVKP 374
           +  + +EAE L  KM+   +KP
Sbjct: 524 KDGKWEEAEVLLDKMIELQLKP 545



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 152/326 (46%), Gaps = 8/326 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G V +     V+ N   K  L  +   +  KM    L P+   YN ++  +C +G + 
Sbjct: 225 EMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKIC 284

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L   M    +  +++TY ++I G C   R+ +A  L   MK+   + NL+ Y+ L+
Sbjct: 285 RAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLI 344

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G C +G++++A  LL +++  G   SP++VTY  +I+ +   G  K    +   ME  G
Sbjct: 345 GGFCDVGNLDKASSLLDQLKSNG--LSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRG 402

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
            +P++VT + LI  +     +++A+Q+   +   G V     Y  L+  L     +KE+ 
Sbjct: 403 ISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESS 462

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           KLF  M    V+P  +  + MI   C          L  ++E  G + +V S  +S ++ 
Sbjct: 463 KLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVAS--YSSIIG 520

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQ 447
            LC+     E    A  +L K I LQ
Sbjct: 521 VLCKDGKWEE----AEVLLDKMIELQ 542



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 119/245 (48%), Gaps = 5/245 (2%)

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           + Y S+I     +  L+ A   F  M   G       +++LL  + R    E+A     E
Sbjct: 94  LLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNE 153

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           +++       +V ++  +I+  C  G + ++  +L  ++ +G +PN V  +TLI G C  
Sbjct: 154 LKER---VKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKN 210

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G+++ A    DK+   G V++   ++ L+  L +    K+   LF KM  +G+ P+    
Sbjct: 211 GDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTY 270

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + ++ E C  G++   F L++++ + G  ++V +  ++ L+ G+CR+    EA KL   M
Sbjct: 271 NCLMNEYCGEGKICRAFDLFDEMRERGVEANVVT--YNTLIGGMCREERVWEAEKLVDQM 328

Query: 440 LKKRI 444
            K  +
Sbjct: 329 KKAAV 333



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 2/163 (1%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           R+M    + P  +    +I  +    +M  A ++   M    L PD+  Y  +I G C  
Sbjct: 396 REMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMK 455

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G ++++  LF+ M       + V Y+ ++ G C+  +  RAL LL EME +G    PNV 
Sbjct: 456 GNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKG--LVPNVA 513

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           +Y+S+I + C  G  +EA  +LD+M  L   P+   ++ + K 
Sbjct: 514 SYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILNMISKA 556


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 145/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +    N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFK 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYMPSV 416



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 93/180 (51%), Gaps = 3/180 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+ 
Sbjct: 242 VTFTTLIDGHCKNGRV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLID 300

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  L PD ITY ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G
Sbjct: 301 EMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 361 RSVDAEKMLREMLSVG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A +  G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMQASGVQPDVYTYSVLINGLCKESKM-DDANELFDEMLDNXLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A +    M KE  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGNCKEGDLETAFKYRKRMIKE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            ++G  P   T + +I  FC +G++    +L+ ++   G + S
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPS 415



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 128/300 (42%), Gaps = 39/300 (13%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRH----------------------------- 228
           DI  +  +I  +  +G L DA   +++ K H                             
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 229 ------GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
                 G  A+L  ++ L+    + G +  A  +   + K      P+VV++ +++  + 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITK--WSLRPSVVSFNTLMNGYI 182

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G + E   + + M+A G  P+  T S LI G C E  +D+A +L D+++    V +G 
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGV 242

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            +++L+    +  R+  A +++ +ML+  + PD +  + +I  LC  G + +   L +++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              G     D   ++ L+ G C++     A K  + M+K+ I L       ++  L + G
Sbjct: 303 SMKGL--KPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEG 360



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           KE   +  V    +I  LC++ R + +A  +LR+M    L+P+   Y  +I  FC+KGD+
Sbjct: 339 KENIRLDDVAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397

Query: 181 IAADELMKGMGLIDLYPDIIT 201
               +L+K M      P ++T
Sbjct: 398 WTGSKLLKEMQRDGYMPSVVT 418


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 186/377 (49%), Gaps = 57/377 (15%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEA 148
           Y +++ M +  C+++  KQ   +  D++     EG V  V    ++ + LC+   +   A
Sbjct: 253 YTYNTLM-DGYCKLANAKQALRLYQDMLG----EGLVPDVVTFGILIDGLCKFGEM-KAA 306

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             +   M +F + P+  +YN++I  +C+ GD+  A  L   +   ++ PD+ TY  +I+G
Sbjct: 307 RNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRG 366

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG---- 264
            C+  R E+A  +F+ M + G  AN V Y++L+DG C+ G M++ALE+  +M + G    
Sbjct: 367 LCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPN 426

Query: 265 ---------GDC--------------------SPNVVTYTSVIQIFCGKGMMKEALGILD 295
                    G C                    SP+VVTYT++I   C  G MKEAL +  
Sbjct: 427 VITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYS 486

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK----------VVAGG---SVSSGG 342
            M   G  PN  TIS L+ G C +G + +A +L  +          V AGG   S+++  
Sbjct: 487 DMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHV 546

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y++L+  L +  +  +A KLFS M   G++PD +   VM+R L     +L    L+ D+
Sbjct: 547 AYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYIL--MMLHADM 604

Query: 403 EKIGFLSSVDSDIHSVL 419
            K G +   +S +H +L
Sbjct: 605 LKFGVIP--NSAVHVIL 619



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 188/412 (45%), Gaps = 43/412 (10%)

Query: 88  SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI-FNLCEKARLAN 146
           S  + S F  N   E+  +     ++ + +  Y + G  ++++   V+ + L +  R   
Sbjct: 106 SRLKSSKFTPNVYGELIIVLCKMELVEEALSMYHKVGAALTIQACNVLLYVLVKTGRF-- 163

Query: 147 EAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           E +W +  +M    L P  I +  +I   C +GD++ A E+   M +  + P +I Y  +
Sbjct: 164 ELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTIL 223

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG- 264
           I+G C+  ++E+A  + + M+  G   N+  Y+ L+DG C+L + ++AL L  +M  EG 
Sbjct: 224 IRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGL 283

Query: 265 ------------GDC--------------------SPNVVTYTSVIQIFCGKGMMKEALG 292
                       G C                    +PN+  Y S+I  +C  G + EA+ 
Sbjct: 284 VPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMA 343

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   +E    +P+  T S LI+G C     +EA  + +K+   G +++   Y+SL+    
Sbjct: 344 LFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCC 403

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  ++ +A ++ S+M  +GV+P+ +  S +I   C    +     +Y ++     + S+ 
Sbjct: 404 KEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEM----VIKSLS 459

Query: 413 SDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            D+  ++ ++ G C+     EA KL   ML   I      +  +++ L K G
Sbjct: 460 PDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDG 511


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 157/299 (52%), Gaps = 5/299 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K +L NEA  +  +M    + P+ I Y+ +I  FC  G ++ A  L+  M L 
Sbjct: 156 IIDGLC-KDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILK 214

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ P++ TY  ++   C  G++++A  L  VM + G   N+V+Y+ L+DG C +G ++ A
Sbjct: 215 NINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNA 274

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++   M ++G   +PNV +Y  +I   C    + EA+ +L  +      PN VT S+LI
Sbjct: 275 KQMFHTMVQKG--VNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLI 332

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC  G +  A  L+ ++   G  +    Y+SL+  L + + L +A  LF KM   G++
Sbjct: 333 DGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQ 392

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           P+    + +I  LC GG+      L++ +   G    ++   ++V++ GLC++    EA
Sbjct: 393 PNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKG--CRINVWTYNVMISGLCKEGMLDEA 449



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 154/297 (51%), Gaps = 4/297 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ + ++M    + PD    N +I  FC  G M  +  ++  +  +   P+ IT  +++K
Sbjct: 29  AISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMK 88

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G ++ +      +   G   + V+Y+ LL+G+C++G    AL+LL  +E      
Sbjct: 89  GLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRS--T 146

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PNVV Y ++I   C   ++ EA  +   M+A G  PN +T STLI GFC+ G L EA+ 
Sbjct: 147 RPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFG 206

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+++++      +   Y+ L+  L +  ++KEA+ L + M   GVKP+ ++ + ++   C
Sbjct: 207 LLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYC 266

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           L G+V     ++  + + G   +V S  +++++  LC+     EA  L R +L K +
Sbjct: 267 LIGEVQNAKQMFHTMVQKGVNPNVYS--YNIMIDRLCKSKRVDEAMNLLREVLHKNM 321



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 8/239 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R+ +EAM +LR++   ++ P+T+ Y+++I  FC+ G + +A +L+K M   
Sbjct: 296 MIDRLCKSKRV-DEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHR 354

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               D++TY S++   C    L+ A  LF  MK  G   N   Y+AL+DG+C+ G  + A
Sbjct: 355 GQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNA 414

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L   +  +G  C  NV TY  +I   C +GM+ EAL +  +ME  GC P+ VT   +I
Sbjct: 415 QKLFQHLLVKG--CRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIII 472

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +    +   D+A +L+ +++A   +     +              +AEKL  +M+A G+
Sbjct: 473 RSLFEKDQNDKAEKLLHEMIAKDLLRFRDFHGER-----SPNENDKAEKLLHEMIAKGL 526



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 4/160 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++ RI     ++ ++    +    V    ++     LC+   L ++A  +  KM E  +
Sbjct: 336 CKLGRITSALDLLKEMYHRGQPADVVTYTSLLDA---LCKNQNL-DKATALFMKMKERGI 391

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P+   Y  +I   C+ G    A +L + + +     ++ TY  MI G C  G L++A  
Sbjct: 392 QPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALA 451

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           +   M+ +GC  + V +  ++  +      ++A +LL EM
Sbjct: 452 MKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 145/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYMPSV 416



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++  + +++ D +    ++G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKM-DDANVLFDEM---LDKGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 149/275 (54%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 142 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 201

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 202 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 259

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M      P+++T +TLI G C EG+LD A++
Sbjct: 260 SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFE 319

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML  G+KPD    +++I E C
Sbjct: 320 HRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFC 379

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G  L +++++ G + SV +  ++VL+ G
Sbjct: 380 KKGDVWKGSKLLKEMQRDGHVPSVVT--YNVLMNG 412



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 98/187 (52%), Gaps = 3/187 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM + ++M    L PD I YN +I   C+KGD+  A  L+ 
Sbjct: 229 VTFTTLIDGHCKNGRV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID 287

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M + +L PD ITY ++I G C  G L+ A    K M +     + VAY+AL+ G+C+ G
Sbjct: 288 EMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEG 347

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G    P+  TYT +I  FC KG + +   +L  M+  G  P+ VT
Sbjct: 348 RSVDAEKMLREMLNVG--LKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 405

Query: 309 ISTLIKG 315
            + L+ G
Sbjct: 406 YNVLMNG 412



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 110/215 (51%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M    L P+ + +  +I   C+ G +  A E+ K M   
Sbjct: 199 LINGLCKESKM-DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 257

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L+ A  L   M       + + Y+ L+DG C+ G ++ A
Sbjct: 258 SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSA 317

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E    M +E  +   + V YT++I   C +G   +A  +L  M  +G  P+  T + +I
Sbjct: 318 FEHRKRMIQE--NIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMII 375

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G V S   Y+ L+
Sbjct: 376 NEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 410



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 146/336 (43%), Gaps = 35/336 (10%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           R D  +++ +I  + E G +  A E  +       +    T   +++        +   G
Sbjct: 50  RSDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWG 109

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            ++ +   G  A+L  ++ L+   C+ G +  A  +   + K G    P+VV+Y +++  
Sbjct: 110 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG--LRPSVVSYNTLMNG 167

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +   G + E   +   M A G  P+  T S LI G C E  +D+A +L D+++  G V +
Sbjct: 168 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPN 227

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  +++L+    +  R+  A +++ +ML+  + PD +  + +I  LC  G + +   L +
Sbjct: 228 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLID 287

Query: 401 DI-------EKIGFLSSVD-----SDI---------------------HSVLLLGLCRKN 427
           ++       +KI + + +D      D+                     ++ L+ GLC++ 
Sbjct: 288 EMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEG 347

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            SV+A K+ R ML   +         I+    K GD
Sbjct: 348 RSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGD 383


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 168/341 (49%), Gaps = 11/341 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C M R+ +    +     A  E G +V      +I +  C+K  + N  +    KM E  
Sbjct: 235 CNMGRVLEAEKWL----NAMVERGFIVDNATCTLIIDAFCQKGYV-NRVVGYFWKMVEMG 289

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L P+ I +  +I   C++G +  A EL++ M      P++ T+ ++I G C  G  E A 
Sbjct: 290 LAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAF 349

Query: 220 GLF-KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
            LF K+++  G   N+  Y+A+++G C+   + RA  LL  M+++G    PN  TYT++I
Sbjct: 350 RLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQG--LVPNTNTYTTLI 407

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C  G    A  ++D M   G +PN  T + +I G C +G+LDEAY+L++KV   G  
Sbjct: 408 DGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQ 467

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
           + G  Y+ L+    R      +   F+KML  G  PD  + + +I   C   Q+ E   L
Sbjct: 468 ADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERL 527

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +E+   +G + +     ++ ++ G CR  ++  A KL + M
Sbjct: 528 FEEAVSLGLIPT--KKTYTSMICGYCRYGNTSLAVKLFQRM 566



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 149/309 (48%), Gaps = 6/309 (1%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           VS K+M V    C   R+     W L  M E     D      +I  FC+KG +      
Sbjct: 225 VSFKLMVVA--CCNMGRVLEAEKW-LNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGY 281

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
              M  + L P++I + ++I G C  G ++ A  L + M R G   N+  ++ L+DG+C+
Sbjct: 282 FWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCK 341

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G  E+A  L  ++ +  G   PNV TYT++I  +C +  +  A  +L RM+  G  PN 
Sbjct: 342 KGWTEKAFRLFLKLVRSDG-YKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNT 400

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
            T +TLI G C  GN   AY+L+D +   G   +   Y++++  L +   L EA +L +K
Sbjct: 401 NTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNK 460

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +   G++ DG+  ++++   C           +  + K+GF   + S  ++ L+   CR+
Sbjct: 461 VSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHS--YTTLISXFCRQ 518

Query: 427 NHSVEAAKL 435
               E+ +L
Sbjct: 519 KQMKESERL 527



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 151/319 (47%), Gaps = 14/319 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C++ +L N A  +L +M E  L P+T  Y  +I   C+ G+ + A ELM  MG  
Sbjct: 371 MINGYCKEDKL-NRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKE 429

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+I TY ++I G C  G L++A  L   +  HG  A+ V Y+ L+   CR     R+
Sbjct: 430 GFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRS 489

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L    +M K G   +P++ +YT++I  FC +  MKE+  + +   +LG  P + T +++I
Sbjct: 490 LVFFNKMLKVGF--TPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMI 547

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C  GN   A +L  ++   G       Y +L+  L +  +L +A  L+  M+  G+ 
Sbjct: 548 CGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLS 607

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS-----------DIHSVLLLG 422
           P  +    +  E C          + + +EK  ++ +V++           D+ ++    
Sbjct: 608 PCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFFHK 667

Query: 423 LCRKNHSVEAAKLARFMLK 441
           L  K  +V    L  FM K
Sbjct: 668 LLDKEPNVNRVTLLGFMNK 686


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 165/324 (50%), Gaps = 17/324 (5%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C  +  +M  + +LC   +    A+ +LR+MP    RP+ + YN VI  FC +G + AA 
Sbjct: 115 CTTTFNIM--LRHLCATGKPV-RALELLRQMP----RPNAVTYNTVIAGFCARGRVQAAL 167

Query: 185 ELMKGM---GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSAL 240
           E+M+ M   G I   PD  TY ++I G+C  GR+EDA  +F  M   G  A + V Y+AL
Sbjct: 168 EVMREMRERGGI--APDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNAL 225

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G C  G ++ AL+   +M + G   +  V TY  ++      G   +A  +L+ M+  
Sbjct: 226 IGGYCDRGKLDVALQYREDMVQRG--VAMTVATYNLLVHALFMDGRASDAYAVLEEMQRN 283

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G +P+  T + LI G+C EGN  +A ++ +++   G  ++   Y+SL+    R  +++E 
Sbjct: 284 GLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQET 343

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           ++LF   +  G++PD +  + +I   C GG +   F +  ++EK       D   ++ L+
Sbjct: 344 DRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRI--PPDDVTYNTLI 401

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
            G C      EA  L   M K+ I
Sbjct: 402 RGFCLLGRLDEARGLIDEMTKRGI 425



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 120/239 (50%), Gaps = 14/239 (5%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARL----ANEAMWVLRKMPEFDLRPDTIIYNN 169
           +DV   Y+E+     V M    +NL   A      A++A  VL +M    L PD   YN 
Sbjct: 235 LDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNI 294

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I  +C++G+   A E+ + M    +    +TY S+I  F   G++++   LFKV  + G
Sbjct: 295 LINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKG 354

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              ++V Y+AL++  C  G MERA E++ EMEK+     P+ VTY ++I+ FC  G + E
Sbjct: 355 IRPDVVMYNALINSHCAGGDMERAFEIMAEMEKK--RIPPDDVTYNTLIRGFCLLGRLDE 412

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           A G++D M   G  P+         G C  G  D+A  L+ ++V  G       Y SL+
Sbjct: 413 ARGLIDEMTKRGIQPDL--------GLCKNGQGDDAENLMKEMVGKGITPDDSTYISLI 463



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 147/329 (44%), Gaps = 51/329 (15%)

Query: 86  LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM--KVIFNLC 139
           L+   R ++  YN      C   R++      ++V+   +E G +   K     +I   C
Sbjct: 139 LRQMPRPNAVTYNTVIAGFCARGRVQA----ALEVMREMRERGGIAPDKYTYATLISGWC 194

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
           +  R+ + A      + + ++ P  ++YN +I  +C++G +  A +  + M    +   +
Sbjct: 195 KIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTV 254

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            TY  ++      GR  DA  + + M+R+G + ++  Y+ L++G C+ G+ ++ALE+  E
Sbjct: 255 ATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEE 314

Query: 260 MEKEGGDCS---------------------------------PNVVTYTSVIQIFCGKGM 286
           M ++G   +                                 P+VV Y ++I   C  G 
Sbjct: 315 MSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGD 374

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           M+ A  I+  ME     P+ VT +TLI+GFC+ G LDEA  LID++   G     G    
Sbjct: 375 MERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDLG---- 430

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPD 375
               L +  +  +AE L  +M+  G+ PD
Sbjct: 431 ----LCKNGQGDDAENLMKEMVGKGITPD 455



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 127/259 (49%), Gaps = 10/259 (3%)

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  LF  + R         ++ +L  +C  G   RALELL +M +      PN VTY +V
Sbjct: 100 AFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR------PNAVTYNTV 153

Query: 278 IQIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           I  FC +G ++ AL ++  M E  G AP++ T +TLI G+C  G +++A ++ D+++  G
Sbjct: 154 IAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQG 213

Query: 337 SVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
            V+ S   Y++L+       +L  A +    M+  GV       ++++  L + G+  + 
Sbjct: 214 EVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDA 273

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
           + + E++++ G   S D   +++L+ G C++ +  +A ++   M +K +         ++
Sbjct: 274 YAVLEEMQRNGL--SPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLI 331

Query: 456 EHLKKSGDEELITNLPKIG 474
               + G  +    L K+ 
Sbjct: 332 YAFSRKGQVQETDRLFKVA 350


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 186/382 (48%), Gaps = 28/382 (7%)

Query: 97  YNRACEMSRIKQNPSI-----IIDVVEAYKEEGCVVSVKMMK---VIFNLCEKARLAN-- 146
           +NR   + R  Q P I     +  VV   K E  V   K M+   + +N+C  + L N  
Sbjct: 28  FNRM--LDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCF 85

Query: 147 -------EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
                      V  K  +   +PD +I+  +I   C  G    A  L+K MGL+   PD+
Sbjct: 86  CFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDV 145

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           +T  S+++G+C+ G+++    +F +M   G   ++ +YS  ++G C++  ++ A+EL  E
Sbjct: 146 VTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDE 205

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M   G    PN VTY ++I+  C     ++A  +  +M A G +P+ +  STL+ GFC +
Sbjct: 206 MSHRG--VVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQ 263

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           GNLDE   L  ++           Y+ ++  + R++++K+A+++ S+++  G+KPD    
Sbjct: 264 GNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTY 323

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + ++  LC  G ++E   L+  +E+ G +    S  ++VLL G  + N +    +L   M
Sbjct: 324 TALVDGLCREGSIIEALRLFRKMEEDGCMPGSCS--YNVLLQGCLQHNDTSTVVQLIHEM 381

Query: 440 LKKRIWLQGPYVDKIVEHLKKS 461
             +     G Y D +     K 
Sbjct: 382 ADR-----GFYADAVTRTFLKD 398



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 151/297 (50%), Gaps = 5/297 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+    +M + + +P  I +N ++              L K M    +  ++ T   +
Sbjct: 22  DDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSIL 81

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC    ++    +F    + G   ++V ++ L+DG+CR+G  E A  LL EM   G 
Sbjct: 82  INCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVG- 140

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C P+VVT  S+++ +C +G + +   I   M + G  P+  + S  I G+C    +DEA
Sbjct: 141 -CVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEA 199

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L D++   G V +   Y++L+  L +  R ++A+ LF KM A G+ PD LA S ++  
Sbjct: 200 MELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDG 259

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK-LARFMLK 441
            C  G + E   L++++++   L   D  ++++++ G+CR     +A + L+R +++
Sbjct: 260 FCKQGNLDEMLVLFQEMQR--RLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVE 314



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 11/233 (4%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEA 148
           Y +S F+ N  C++ +I +     +++ +     G V  +V    +I  LC+  R   +A
Sbjct: 181 YSYSIFI-NGYCKVEKIDE----AMELFDEMSHRGVVPNAVTYNTLIKALCQALR-PRDA 234

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             + RKM    L PD + Y+ ++  FC++G++     L + M    + PD++ Y  +I G
Sbjct: 235 QVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIING 294

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C + +++DA  +   +   G   ++  Y+AL+DG+CR GS+  AL L  +ME++G  C 
Sbjct: 295 MCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDG--CM 352

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           P   +Y  ++Q           + ++  M   G   + VT  T +K F + GN
Sbjct: 353 PGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVT-RTFLKDF-LPGN 403


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 152/280 (54%), Gaps = 4/280 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D + YN  +   C+K     AD L   M    + PD  T+ ++I+G+C  G ++ A  LF
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + M R     + V Y+ L+DG C+ G M RA EL  +M ++  D  P+ ++Y +V+  FC
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRK--DIIPDHISYGTVLNGFC 583

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G++ EAL + D+M   G  PN VT +TLIKG+C  G++ +AY+ + K+++ G +    
Sbjct: 584 SSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSF 643

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y++L+   ++   L++A  L ++M   G++ + +  ++++   C  G++ E   +   +
Sbjct: 644 SYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKM 703

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +IG   + D   +S L+ G   +++  EA +    ML++
Sbjct: 704 IEIGI--NPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 125/230 (54%), Gaps = 2/230 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+ +   M   +L+PD + YN +I  FC+ G+M  A EL   M   D+ PD I+Y ++
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTV 578

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + GFC++G L +A  L   M   G   NLV  + L+ G CR G M +A E L +M   G 
Sbjct: 579 LNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG- 637

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+  +Y ++I  +  +  +++A  +++ ME  G   N +T + ++ GFC EG + EA
Sbjct: 638 -IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEA 696

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            Q++ K++  G    G  YSSL+   V    +KEA +   +ML  G+ PD
Sbjct: 697 EQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 149/286 (52%), Gaps = 4/286 (1%)

Query: 124 GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC + V       N LC+K   A+  M +  +M E  + PD   +  +IR +C+ G+M  
Sbjct: 462 GCFMDVVTYNTFLNGLCKKKMFADADM-LFNEMVERGMVPDFYTFTTLIRGYCKDGNMDK 520

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L + M   +L PD +TY ++I GFC AG +  A  L+  M R     + ++Y  +L+
Sbjct: 521 ALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLN 580

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G C  G +  AL L  +M ++G    PN+VT  ++I+ +C  G M +A   L +M + G 
Sbjct: 581 GFCSSGLLPEALNLCDQMLEKG--IRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGI 638

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+  + +TLI G+  E NL++A+ LI+++   G   +   Y+ ++       +++EAE+
Sbjct: 639 IPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQ 698

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
           +  KM+  G+ PDG   S +I        + E F  ++++ + G +
Sbjct: 699 VLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLV 744



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 155/321 (48%), Gaps = 4/321 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G  ++V  + ++ N   K R     M+ L  M    +  D + YN +I  +C +G +  A
Sbjct: 252 GIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEA 311

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            +L+       + P ++TY +++ G C  G+ + A  +   M + G   N   Y+ LL  
Sbjct: 312 FQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVE 371

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           ICR  ++  A E+  EM + G    P++V+++S+I +    G + +AL     ME  G  
Sbjct: 372 ICRRDNILEAQEIFDEMSRRG--VLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV 429

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ V  + LI GFC  G L +A ++ D+++A G       Y++ +  L + K   +A+ L
Sbjct: 430 PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML 489

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F++M+  G+ PD    + +IR  C  G + +   L+E + +       D   ++ L+ G 
Sbjct: 490 FNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL--KPDKVTYNTLIDGF 547

Query: 424 CRKNHSVEAAKLARFMLKKRI 444
           C+      A +L   M++K I
Sbjct: 548 CKAGEMGRAKELWDDMIRKDI 568



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 135/276 (48%), Gaps = 35/276 (12%)

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           + Y  +++ +  A +L +    F++++R G + ++ A + LL G+ R G ++ A E+ GE
Sbjct: 188 LIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGE 247

Query: 260 M---------------------------------EKEGGDCSPNVVTYTSVIQIFCGKGM 286
           +                                 + EG     ++VTY ++I  +C +G+
Sbjct: 248 VVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGL 307

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           ++EA  +L+   + G  P  +T + ++ G C  G  D A  ++ +++  G   +   Y++
Sbjct: 308 VEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNT 367

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+VE+ R   + EA+++F +M   GV PD ++ S +I  L   G + +    + ++E+ G
Sbjct: 368 LLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSG 427

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +   D+ I+++L+ G CR     +A K+   ML +
Sbjct: 428 IVP--DNVIYTILIDGFCRNGALSDALKMRDEMLAR 461


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 137/262 (52%), Gaps = 15/262 (5%)

Query: 136 FNLCEKARLANEAMWVLRKMPEFDLR-------------PDTIIYNNVIRLFCEKGDMIA 182
           F +  KAR  N  +  L K  E DL              P    YN +I   C++GDM+ 
Sbjct: 91  FRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLT 150

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L + M  + L PDI+TY ++I G+   G L+++  LF+ MK  GC  +++ Y+AL++
Sbjct: 151 ARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALIN 210

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
             C+   M RA E   EM+ +  D  PNV++Y+++I   C +GMM+ A+     M  +G 
Sbjct: 211 SFCKFKGMLRAFEFFREMKDK--DLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGL 268

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN  T S+LI   C  GNL EA+ L D+++      +   Y++L+  L     + EAE+
Sbjct: 269 LPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEE 328

Query: 363 LFSKMLASGVKPDGLACSVMIR 384
           LF  M  +GV P+  A + +I 
Sbjct: 329 LFRAMGKAGVTPNLQAYTALIH 350



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 148/317 (46%), Gaps = 4/317 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  K+ G    +     + +   K  L +E++ +  +M      PD I YN +I  FC
Sbjct: 154 LFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFC 213

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +   M+ A E  + M   DL P++I+Y ++I   C  G ++ A   F  M R G   N  
Sbjct: 214 KFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEF 273

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS+L+D  C+ G++  A  L  EM +E  D   N+VTYT+++   C +GMM EA  +  
Sbjct: 274 TYSSLIDANCKAGNLGEAFMLADEMLQEHVDL--NIVTYTTLLDGLCEEGMMNEAEELFR 331

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   G  PN    + LI G     ++D+A +L +++           + ++V  L    
Sbjct: 332 AMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSES 391

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           +L+E + + ++M  SG+  + +  + ++      G   E   L E++  +G  + V    
Sbjct: 392 KLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLG--TEVTVVT 449

Query: 416 HSVLLLGLCRKNHSVEA 432
              L+ GLC++    EA
Sbjct: 450 FCALIDGLCKRGLVQEA 466



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 132/268 (49%), Gaps = 2/268 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K R  ++AM +  +M E D++PD +++  ++   C +  +     +M  M    +  + +
Sbjct: 354 KVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPV 413

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            Y +++  +  AG   +A  L + M+  G    +V + AL+DG+C+ G ++ A+   G M
Sbjct: 414 IYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRM 473

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
                D  PNV  YT++I   C    + +A  + D M+     P+++  + +I G    G
Sbjct: 474 PDH--DLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHG 531

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           N  EA  + +K++  G       Y+SLV  L +  ++++A K  ++M+  G+ PD   C+
Sbjct: 532 NFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCT 591

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFL 408
            ++R+    G + E   L  ++ + G +
Sbjct: 592 RLLRKHYELGNIDEAIELQNELVEKGLI 619



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 147/329 (44%), Gaps = 4/329 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  K  GC   V     + N   K +    A    R+M + DL+P+ I Y+ +I   C
Sbjct: 189 LFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALC 248

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G M  A +    M  + L P+  TY S+I   C AG L +A  L   M +     N+V
Sbjct: 249 KEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIV 308

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ LLDG+C  G M  A EL   M K G   +PN+  YT++I        M +A+ + +
Sbjct: 309 TYTTLLDGLCEEGMMNEAEELFRAMGKAG--VTPNLQAYTALIHGHIKVRSMDKAMELFN 366

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M      P+ +   T++ G C E  L+E   ++ ++   G  ++   Y++L+    +  
Sbjct: 367 EMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAG 426

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
              EA  L  +M   G +   +    +I  LC  G V E    +  +       +V   +
Sbjct: 427 NRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNV--AV 484

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           ++ L+ GLC+ N   +A KL   M  K +
Sbjct: 485 YTALIDGLCKNNCIGDAKKLFDEMQDKNM 513



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 125/282 (44%), Gaps = 8/282 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P    + ++       G LE A   F  M +        + +A L  + + G  + + + 
Sbjct: 60  PGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDF 119

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             +M   G   +P V TY  +I   C +G M  A  + ++M+ +G  P+ VT +TLI G+
Sbjct: 120 FRDMV--GAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGY 177

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
              G LDE+  L +++   G       Y++L+    + K +  A + F +M    +KP+ 
Sbjct: 178 GKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNV 237

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           ++ S +I  LC  G +      + D+ ++G L   +   +S L+   C+  +  EA  LA
Sbjct: 238 ISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLP--NEFTYSSLIDANCKAGNLGEAFMLA 295

Query: 437 RFMLKKRIWLQ----GPYVDKIVEHLKKSGDEELITNLPKIG 474
             ML++ + L        +D + E    +  EEL   + K G
Sbjct: 296 DEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAG 337



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 39/231 (16%)

Query: 109 NPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           N +  I+++E  ++ G  V+V     +I  LC++  L  EA++   +MP+ DL+P+  +Y
Sbjct: 427 NRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRG-LVQEAIYYFGRMPDHDLQPNVAVY 485

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
             +I   C+   +  A +L   M   ++ PD I Y +MI G    G  ++A  +   M  
Sbjct: 486 TALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMME 545

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   +L AY++L+ G+ + G +++A + L EM                      GKG++
Sbjct: 546 MGIELDLYAYTSLVWGLSQCGQVQQARKFLAEM---------------------IGKGII 584

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                           P+    + L++     GN+DEA +L +++V  G +
Sbjct: 585 ----------------PDETLCTRLLRKHYELGNIDEAIELQNELVEKGLI 619


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 167/332 (50%), Gaps = 8/332 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC  +R    A+ V+ KM +F   PD +  +++I  FC+   +  A +L+  M  +
Sbjct: 110 VINCLCRCSRFV-IALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEM 168

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD++ Y ++I G C  G + DA  LF  M+R G  A+ V Y++L+ G+C  G    A
Sbjct: 169 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 228

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L+ +M     D  PNV+T+T+VI +F  +G   EA+ + + M      P+  T ++LI
Sbjct: 229 ARLMRDMVMR--DIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLI 286

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C+ G +DEA Q++D +V  G +     Y++L+    ++KR+ E  KLF +M   G+ 
Sbjct: 287 NGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLV 346

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            D +  + +I+     G+      ++  ++     S  +   +S+LL GLC      +A 
Sbjct: 347 GDTITYNTIIQGYFQAGRPDAAQEIFSRMD-----SRPNIRTYSILLYGLCMNWRVEKAL 401

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            L   M K  I L     + ++  + K G+ E
Sbjct: 402 VLFENMQKSEIELDITTYNIVIHGMCKIGNVE 433



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 171/346 (49%), Gaps = 11/346 (3%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + N  C+ +R+       ID+V   +E G    V +   I +   K  L N+A+ +  
Sbjct: 143 SSLINGFCQGNRVFD----AIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFD 198

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M    +R D + YN+++   C  G    A  LM+ M + D+ P++IT+ ++I  F   G
Sbjct: 199 RMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEG 258

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +  +A  L++ M R     ++  Y++L++G+C  G ++ A ++L  M  +G  C P+VVT
Sbjct: 259 KFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG--CLPDVVT 316

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y ++I  FC    + E   +   M   G   + +T +T+I+G+   G  D A ++  ++ 
Sbjct: 317 YNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMD 376

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           +  ++ +   YS L+  L    R+++A  LF  M  S ++ D    +++I  +C  G V 
Sbjct: 377 SRPNIRT---YSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVE 433

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + + L+  +   G    V S  ++ ++ G CRK    ++  L R M
Sbjct: 434 DAWDLFRSLSCKGLKPDVVS--YTTMISGFCRKRQWDKSDLLYRKM 477



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 114/229 (49%), Gaps = 5/229 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EAM +  +M    + PD   YN++I   C  G +  A +++  M      PD++TY ++
Sbjct: 261 SEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTL 320

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GFC + R+++   LF+ M + G   + + Y+ ++ G  + G  + A E+   M     
Sbjct: 321 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM----- 375

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           D  PN+ TY+ ++   C    +++AL + + M+      +  T + +I G C  GN+++A
Sbjct: 376 DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDA 435

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           + L   +   G       Y++++    R ++  +++ L+ KM   G+ P
Sbjct: 436 WDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 124/245 (50%), Gaps = 4/245 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ +Y  +I   C   R   A  +   M + G   ++V  S+L++G C+   +  A++L+
Sbjct: 103 DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLV 162

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +ME+ G    P+VV Y ++I   C  G++ +A+ + DRME  G   + VT ++L+ G C
Sbjct: 163 SKMEEMG--FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLC 220

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G   +A +L+  +V    V +   +++++   V+  +  EA KL+ +M    V PD  
Sbjct: 221 CSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVF 280

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I  LC+ G+V E   + + +   G L  V +  ++ L+ G C+     E  KL R
Sbjct: 281 TYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVT--YNTLINGFCKSKRVDEGTKLFR 338

Query: 438 FMLKK 442
            M ++
Sbjct: 339 EMAQR 343



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 32/174 (18%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC+  V     + N   K++  +E   + R+M +  L  DTI YN +I+ + + G   A
Sbjct: 308 KGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDA 367

Query: 183 ADE--------------------------------LMKGMGLIDLYPDIITYVSMIKGFC 210
           A E                                L + M   ++  DI TY  +I G C
Sbjct: 368 AQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMC 427

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
             G +EDA  LF+ +   G   ++V+Y+ ++ G CR    +++  L  +M+++G
Sbjct: 428 KIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 481



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 44/253 (17%)

Query: 197 PDIITYVSMIKGFCNAGR-----LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           P I+ ++S   G   + +     LE+   LF  M +     ++V +S +L  I +  + +
Sbjct: 27  PVIVPFISRFWGRTFSTKRSSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYD 86

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
             + L   ME  G     ++ +Y  VI   C       AL ++ +M   G  P+ VT+S+
Sbjct: 87  LVISLFHHMEVCG--IGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSS 144

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           LI GFC +GN                                  R+ +A  L SKM   G
Sbjct: 145 LINGFC-QGN----------------------------------RVFDAIDLVSKMEEMG 169

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
            +PD +  + +I   C  G V +   L++ +E+ G  +  D+  ++ L+ GLC      +
Sbjct: 170 FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRA--DAVTYNSLVAGLCCSGRWSD 227

Query: 432 AAKLARFMLKKRI 444
           AA+L R M+ + I
Sbjct: 228 AARLMRDMVMRDI 240


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 165/332 (49%), Gaps = 12/332 (3%)

Query: 134 VIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V++N     LC +  L   A+ V+ +M E    PD   YN VI   C+ G++  A  +M 
Sbjct: 290 VVYNSLVKGLCRQG-LILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMN 348

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
              +    PD+ T+ +MI G+C   +L+ A  L + M  +G A + + Y+++L+G+C+ G
Sbjct: 349 DAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAG 408

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
             +   E   EM  +G  C PN +TY  +I+ FC    ++EA G++ RM   G  P+ ++
Sbjct: 409 KAKEVNETFEEMILKG--CRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTIS 466

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI GFC  G+LD AY L  K+   G  ++   ++ L+        ++ AEK+F +M+
Sbjct: 467 FNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMI 526

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           + G KPD     V++   C    V   +    ++   GF+ S+ +     +L  L   + 
Sbjct: 527 SKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMAT--FGRVLNSLAMNHR 584

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
             EA  +   M+  R+ +    VD I+   KK
Sbjct: 585 VSEAVAIIHIMV--RMGVVPEVVDTILSTDKK 614



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 170/335 (50%), Gaps = 10/335 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           CE  R+++  +++ + ++AY     V    +M+    LC+ +++  EA   LR+M     
Sbjct: 161 CEGGRLEEAVALV-ESMDAYIAPDVVTYNTLMR---GLCKDSKV-QEAAQYLRRMMNQGC 215

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   YN +I  +C++  +  A EL+K        PD +TY S+I G C  G +E A  
Sbjct: 216 IPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALE 275

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF   +      +LV Y++L+ G+CR G +  AL+++ EM ++G  C P++ TY  VI  
Sbjct: 276 LFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDG--CHPDIWTYNIVING 333

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G + +A  +++     G  P+  T +T+I G+C    LD A QL++++   G    
Sbjct: 334 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPD 393

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+S++  L +  + KE  + F +M+  G +P+ +  +++I   C   Q+ E   +  
Sbjct: 394 AITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIV 453

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            + + G +   D+   + L+ G CR N  ++ A L
Sbjct: 454 RMSQDGLVP--DTISFNTLIHGFCR-NGDLDGAYL 485



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 171/356 (48%), Gaps = 22/356 (6%)

Query: 106 IKQNPSIIIDVVEAYKEEGC-VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           I   P + + ++ +  E GC V  +    V+  L        +A  +  +M   D+ PD 
Sbjct: 57  ITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGH-GYDARHLFDEMLRRDVFPDV 115

Query: 165 IIYNNVIRLFCEKGDMIAADELM-----KGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             +NNV+   C+KGD++ +  L+     +GM +     +I      I+G C  GRLE+A 
Sbjct: 116 ATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNI-----WIRGLCEGGRLEEAV 170

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L + M  +  A ++V Y+ L+ G+C+   ++ A + L  M  +G  C P+  TY ++I 
Sbjct: 171 ALVESMDAY-IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQG--CIPDDFTYNTIID 227

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +C + M++EA  +L      G  P+RVT  +LI G C EG+++ A +L ++  A     
Sbjct: 228 GYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKP 287

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y+SLV  L R   +  A ++ ++M+  G  PD    +++I  LC  G + +   + 
Sbjct: 288 DLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVM 347

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
            D    G+L  V +   + ++ G C++     A +L      +R+W+ G   D I 
Sbjct: 348 NDAIVKGYLPDVFT--FNTMIDGYCKRLKLDSALQLV-----ERMWMYGIAPDAIT 396



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 124/284 (43%), Gaps = 11/284 (3%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M  F   P    YN ++           A ++   M    + PD  T+   IK FC  GR
Sbjct: 1   MDLFGCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGR 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
              A  L + +   GC    +AY  ++ G+   G    A  L  EM +   D  P+V T+
Sbjct: 61  PHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRR--DVFPDVATF 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI---DK 331
            +V+   C KG + E+  +L ++   G + N+ T +  I+G C  G L+EA  L+   D 
Sbjct: 119 NNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDA 178

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
            +A   V+    Y++L+  L +  +++EA +   +M+  G  PD    + +I   C    
Sbjct: 179 YIAPDVVT----YNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDM 234

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           + E   L +D    GF+   D   +  L+ GLC +     A +L
Sbjct: 235 LQEATELLKDAIFKGFVP--DRVTYCSLINGLCAEGDVERALEL 276



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 106/218 (48%), Gaps = 5/218 (2%)

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   GC     AY+A++D +      ++A ++   M   G   +P+  T+T  I+ FC  
Sbjct: 1   MDLFGCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAG--VAPDARTHTVRIKSFCIT 58

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G    AL +L  +   GC    +   T+++G    G+  +A  L D+++          +
Sbjct: 59  GRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATF 118

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++++  L +   + E+  L +K+L  G+  +   C++ IR LC GG++ E   L E ++ 
Sbjct: 119 NNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMD- 177

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             +++  D   ++ L+ GLC+ +   EAA+  R M+ +
Sbjct: 178 -AYIAP-DVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQ 213


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 200/449 (44%), Gaps = 54/449 (12%)

Query: 56  KLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN----RACEMSRIKQNPS 111
           +L      EV+ R   +  ++G +F  ++ L  +  H    YN      C+M        
Sbjct: 37  QLTPLIAFEVIKRF--NNPKVGFKFLEFSRLNLNVNHCYSTYNLLMRSLCQMGHHD---- 90

Query: 112 IIIDVVEAY-KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
            ++++V  Y   +G +   K++  +     +A   +    +L ++   ++R ++ +YNN+
Sbjct: 91  -LVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNL 149

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           + +  ++  +  A  L K   ++   PD  T+  +I+G C  G ++ A  +FK M+  GC
Sbjct: 150 LSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGC 209

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             ++V Y+ L++G+C+   ++R  EL  E++    DCSP++VTYTS+I  FC  G MKEA
Sbjct: 210 LPDVVTYNTLINGLCKANEVQRGCELFKEIQSRS-DCSPDIVTYTSIISGFCKSGKMKEA 268

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA-------------------YQLIDK 331
             + + M   G  PN +T + LI GF   GN+ EA                     LID 
Sbjct: 269 SNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDG 328

Query: 332 VVAGGSVSSG----------------GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
               G V+ G                  Y+ L+  L +  RL EA     ++  S + P 
Sbjct: 329 YCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPK 388

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVEAA 433
               + +I   C  G V EG  + +++E+       D D    ++L++G C K    EA 
Sbjct: 389 PFMYNPVIDGFCKAGNVDEGNVILKEMEE----KRCDPDKVTFTILIIGHCVKGRMFEAI 444

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            +   ML  R       V+ ++  L K+G
Sbjct: 445 NIFNRMLATRCAPDNITVNSLISCLLKAG 473



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 38/287 (13%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDIITYVS 204
           + A  V + M  F   PD + YN +I   C+  ++    EL K +    D  PDI+TY S
Sbjct: 195 DRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTS 254

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I GFC +G++++A  LF+ M R G   N++ ++ L+DG  ++G++  A  +  +M    
Sbjct: 255 IISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAY-- 312

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
            DCS +VVT+TS+I  +C  G +   L   + M+    +P   T + LI   C E  L+E
Sbjct: 313 FDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNE 372

Query: 325 AYQL-------------------IDKVVAGGSVSSGG----------------CYSSLVV 349
           A                      ID     G+V  G                  ++ L++
Sbjct: 373 ARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILII 432

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
                 R+ EA  +F++MLA+   PD +  + +I  L   G   E +
Sbjct: 433 GHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNEAY 479



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 116/235 (49%), Gaps = 3/235 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  ++  EA  +  +M    ++P+ I +N +I  F + G++  A+ + +
Sbjct: 250 VTYTSIISGFCKSGKMK-EASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYR 308

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M   D   D++T+ S+I G+C AG++      + VMK    +  +  Y+ L++ +C+  
Sbjct: 309 KMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKEN 368

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  A + LG+++       P    Y  VI  FC  G + E   IL  ME   C P++VT
Sbjct: 369 RLNEARDFLGQIKNSS--IIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVT 426

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
            + LI G CV+G + EA  + ++++A          +SL+  L++     EA ++
Sbjct: 427 FTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRI 481


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 164/331 (49%), Gaps = 6/331 (1%)

Query: 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDT 164
           +K   S  +D++      GC  +      I N +C+    A+ A+ +LRKM    ++P  
Sbjct: 207 LKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTAS-ALDLLRKMEHRKIKPHV 265

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + Y  +I   C+ G +  A      M    +  ++ TY S+I  FC+ GR +D   L + 
Sbjct: 266 VTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRD 325

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M       N+V +SAL+D + + G +  A +L  EM   G    PN +TY S+I   C  
Sbjct: 326 MITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRG--IEPNTITYNSLIYGLCND 383

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             + EA  ++D M + GC P+  T + LI GFC    +D+  +L  K+   G ++    Y
Sbjct: 384 KRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTY 443

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           S+L+    ++++L  A+K+F +M++ GV P  +  ++++  LC  G++ E   + + + K
Sbjct: 444 STLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHK 503

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
                 +D  I+++++ G+C  N   +A  L
Sbjct: 504 CKM--ELDIGIYNIIIHGMCNANKVDDAWSL 532



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 168/339 (49%), Gaps = 9/339 (2%)

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP 162
           ++R KQ   +++ + +  + +G    +  + ++ N   + R    A   + K+ +    P
Sbjct: 100 LARTKQY-DLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEP 158

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           +T+ +N ++   C +G +  A EL+  M L    PD+IT  +++ G C   R+ +A  L 
Sbjct: 159 NTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLI 218

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M  +GC  N   Y  +L+ +C+ G+   AL+LL +ME       P+VVTYT +I   C
Sbjct: 219 ARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHR--KIKPHVVTYTIIIDNLC 276

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G + +AL     ME  G   N  T ++LI  FC  G  D+  QL+  ++      +  
Sbjct: 277 KDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVV 336

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            +S+L+  LV+  +L EA+ L+++M+  G++P+ +  + +I  LC   ++ E   + + +
Sbjct: 337 TFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLM 396

Query: 403 EKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFM 439
              G     D DI  +++L+ G C+     +  +L R M
Sbjct: 397 VSKG----CDPDIWTYNILINGFCKAKQVDDGMRLFRKM 431



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 140/285 (49%), Gaps = 3/285 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I +L ++ +L  EA  +  +M    + P+TI YN++I   C    +  A+++M 
Sbjct: 336 VTFSALIDSLVKEGKLT-EAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMD 394

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      PDI TY  +I GFC A +++D   LF+ M   G  A+ V YS L+ G C+  
Sbjct: 395 LMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSR 454

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  A ++  EM  +G    P ++TY  ++   C  G ++EALGILD+M       +   
Sbjct: 455 KLIVAKKVFQEMVSQG--VHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGI 512

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + +I G C    +D+A+ L   + + G       Y+ ++  L +   L EA+ LF KM 
Sbjct: 513 YNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMK 572

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             G +PDG   + +IR    G  +     L E++++ GF S   +
Sbjct: 573 EDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDAST 617



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 152/306 (49%), Gaps = 5/306 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I NLC+  RL ++A+    +M    ++ +   YN++I  FC  G      +L++ M   
Sbjct: 271 IIDNLCKDGRL-DDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITR 329

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+++T+ ++I      G+L +A  L+  M   G   N + Y++L+ G+C    ++ A
Sbjct: 330 KITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEA 389

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +++  M  +G  C P++ TY  +I  FC    + + + +  +M   G   + VT STLI
Sbjct: 390 NQMMDLMVSKG--CDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLI 447

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           +GFC    L  A ++  ++V+ G       Y+ L+  L     L+EA  +  +M    ++
Sbjct: 448 QGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKME 507

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            D    +++I  +C   +V + + L+  +   G    + S  ++++L GLC+++   EA 
Sbjct: 508 LDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQS--YNIMLSGLCKRSSLSEAD 565

Query: 434 KLARFM 439
            L R M
Sbjct: 566 ALFRKM 571



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 123/247 (49%), Gaps = 6/247 (2%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC   +    ++ N   KA+  ++ M + RKM    +  DT+ Y+ +I+ FC+   +I 
Sbjct: 399 KGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIV 458

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A ++ + M    ++P I+TY  ++ G C+ G LE+A G+   M +     ++  Y+ ++ 
Sbjct: 459 AKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIH 518

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C    ++ A  L   +  +G     ++ +Y  ++   C +  + EA  +  +M+  G 
Sbjct: 519 GMCNANKVDDAWSLFCSLPSKG--VKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGY 576

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+  T +TLI+      ++  + QLI+++   G  SS      +V++++ +    E +K
Sbjct: 577 EPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCG-FSSDASTVKIVMDMLSS---GELDK 632

Query: 363 LFSKMLA 369
            F  ML+
Sbjct: 633 SFLNMLS 639



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 136/307 (44%), Gaps = 20/307 (6%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFC--EKGDMIAADELMKGMGLIDLYPDIITYV 203
           ++A+ + + M      P  I +N +  L    ++ D++ A  L K M L  +  D+ T  
Sbjct: 72  DDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLA--LCKQMELKGIAYDLYTLN 129

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            MI  FC   +L  A      + + G   N V ++ LL+G+C  G +  A+EL+      
Sbjct: 130 IMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELV------ 183

Query: 264 GGDC------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             DC       P+++T  +++   C K  + EA+ ++ RM A GC PN+ T   ++   C
Sbjct: 184 --DCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMC 241

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             GN   A  L+ K+           Y+ ++  L +  RL +A   FS+M   G+K +  
Sbjct: 242 KSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVF 301

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I   C  G+  +G  L  D+       +V +   S L+  L ++    EA  L  
Sbjct: 302 TYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVT--FSALIDSLVKEGKLTEAKDLYN 359

Query: 438 FMLKKRI 444
            M+ + I
Sbjct: 360 EMITRGI 366



 Score = 45.1 bits (105), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 2/194 (1%)

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P V+ +  +  +          L +  +ME  G A +  T++ +I  FC    L  A+  
Sbjct: 88  PTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSA 147

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
           + K+   G   +   +++L+  L    R+ EA +L   M+ S   PD +  + ++  LCL
Sbjct: 148 MGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCL 207

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
             +V E   L   +   G     +   +  +L  +C+  ++  A  L R M  ++I    
Sbjct: 208 KDRVSEAVDLIARMMANG--CQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHV 265

Query: 449 PYVDKIVEHLKKSG 462
                I+++L K G
Sbjct: 266 VTYTIIIDNLCKDG 279


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 152/280 (54%), Gaps = 4/280 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D + YN  +   C+K     AD L   M    + PD  T+ ++I+G+C  G ++ A  LF
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + M R     + V Y+ L+DG C+ G M RA EL  +M ++  D  P+ ++Y +V+  FC
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRK--DIIPDHISYGTVLNGFC 583

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G++ EAL + D+M   G  PN VT +TLIKG+C  G++ +AY+ + K+++ G +    
Sbjct: 584 SSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSF 643

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y++L+   ++   L++A  L ++M   G++ + +  ++++   C  G++ E   +   +
Sbjct: 644 SYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKM 703

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +IG   + D   +S L+ G   +++  EA +    ML++
Sbjct: 704 IEIGI--NPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 125/230 (54%), Gaps = 2/230 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+ +   M   +L+PD + YN +I  FC+ G+M  A EL   M   D+ PD I+Y ++
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTV 578

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + GFC++G L +A  L   M   G   NLV  + L+ G CR G M +A E L +M   G 
Sbjct: 579 LNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG- 637

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+  +Y ++I  +  +  +++A  +++ ME  G   N +T + ++ GFC EG + EA
Sbjct: 638 -IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEA 696

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            Q++ K++  G    G  YSSL+   V    +KEA +   +ML  G+ PD
Sbjct: 697 EQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 149/286 (52%), Gaps = 4/286 (1%)

Query: 124 GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC + V       N LC+K   A+  M +  +M E  + PD   +  +IR +C+ G+M  
Sbjct: 462 GCFMDVVTYNTFLNGLCKKKMFADADM-LFNEMVERGMVPDFYTFTTLIRGYCKDGNMDK 520

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L + M   +L PD +TY ++I GFC AG +  A  L+  M R     + ++Y  +L+
Sbjct: 521 ALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLN 580

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G C  G +  AL L  +M ++G    PN+VT  ++I+ +C  G M +A   L +M + G 
Sbjct: 581 GFCSSGLLPEALNLCDQMLEKG--IRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGI 638

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+  + +TLI G+  E NL++A+ LI+++   G   +   Y+ ++       +++EAE+
Sbjct: 639 IPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQ 698

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
           +  KM+  G+ PDG   S +I        + E F  ++++ + G +
Sbjct: 699 VLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLV 744



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 155/321 (48%), Gaps = 4/321 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G  ++V  + ++ N   K R     M+ L  M    +  D + YN +I  +C +G +  A
Sbjct: 252 GIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEA 311

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            +L+       + P ++TY +++ G C  G+ + A  +   M + G   N   Y+ LL  
Sbjct: 312 FQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVE 371

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           ICR  ++  A E+  EM + G    P++V+++S+I +    G + +AL     ME  G  
Sbjct: 372 ICRRDNILEAQEIFDEMSRRG--VLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIV 429

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ V  + LI GFC  G L +A ++ D+++A G       Y++ +  L + K   +A+ L
Sbjct: 430 PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADML 489

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F++M+  G+ PD    + +IR  C  G + +   L+E + +       D   ++ L+ G 
Sbjct: 490 FNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL--KPDKVTYNTLIDGF 547

Query: 424 CRKNHSVEAAKLARFMLKKRI 444
           C+      A +L   M++K I
Sbjct: 548 CKAGEMGRAKELWDDMIRKDI 568



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 135/276 (48%), Gaps = 35/276 (12%)

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           + Y  +++ +  A +L +    F++++R G + ++ A + LL G+ R G ++ A E+ GE
Sbjct: 188 LIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGE 247

Query: 260 M---------------------------------EKEGGDCSPNVVTYTSVIQIFCGKGM 286
           +                                 + EG     ++VTY ++I  +C +G+
Sbjct: 248 VVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGL 307

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           ++EA  +L+   + G  P  +T + ++ G C  G  D A  ++ +++  G   +   Y++
Sbjct: 308 VEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNT 367

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+VE+ R   + EA+++F +M   GV PD ++ S +I  L   G + +    + ++E+ G
Sbjct: 368 LLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSG 427

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +   D+ I+++L+ G CR     +A K+   ML +
Sbjct: 428 IVP--DNVIYTILIDGFCRNGALSDALKMRDEMLAR 461


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 149/275 (54%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 143 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 202

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 203 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 260

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG + +A G++D M   G  P++ T +TLI G C EG+LD A++
Sbjct: 261 LPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFE 320

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++++  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 321 HRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFC 380

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G  L +++++ G + SV +  ++VL+ G
Sbjct: 381 KKGDVWKGSKLLKEMQRNGHVPSVXT--YNVLMNG 413



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M    L P+ + +  +I   C+ G +  A E+ K M   
Sbjct: 200 LINGLCKESKM-DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 258

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L  A GL   M   G   +   Y+ L+DG C+ G ++ A
Sbjct: 259 SLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAA 318

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E    M +E  +   + V YT++I   C +G   +A  +L  M ++G  P+  T + +I
Sbjct: 319 FEHRKRMIQE--NIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMII 376

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G V S   Y+ L+
Sbjct: 377 NEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLM 411



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 114/240 (47%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    R  +L+
Sbjct: 53  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKL----RYFKLV 108

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 109 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 168

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   ++A G       YS L+  L +  ++ +A +LF +ML  G+ P+
Sbjct: 169 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPN 228

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 229 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP--DLITYNTLIYGLCKKGDLNQAHGL 286



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            V    +I  LC++ R   +A  +LR+M    L+PDT  Y  +I  FC+KGD+    +L+
Sbjct: 334 DVAYTAIISGLCQEGRPV-DAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLL 392

Query: 188 KGMGLIDLYPDIITYVSMIKG 208
           K M      P + TY  ++ G
Sbjct: 393 KEMQRNGHVPSVXTYNVLMNG 413


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 144/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   ++EDA  LF+ M  +G   N V ++ L+DG C+ G +  A+E+  +M  +    
Sbjct: 215 GLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A  
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXX 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYVPSV 416



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S+++       ++ E   + G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMEDAN----ELFEEMLDNGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+   AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RVX-LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 178/350 (50%), Gaps = 12/350 (3%)

Query: 93  SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWV 151
           S F +NR        ++ S +  + +     G    +  + ++ N LC   R+ NE +  
Sbjct: 90  SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRI-NEGLAA 148

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           +  +      PD + +  +I+  C +  +I A +L   M  +   P+++TY ++IKG C 
Sbjct: 149 MAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCA 208

Query: 212 AGRLEDACGLFKVMKR------HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
            G +  A    + M          C  N+++YS ++DG+C++G+ E A+ L  EM  +G 
Sbjct: 209 LGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQG- 267

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PNVVT++ +I + C +G + +A  +L+ M  +G  PN  T ++LIKGFC+ G+L+ A
Sbjct: 268 -VQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSA 326

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L   + + G       Y+ L+    +T +++EA KLF++ML  G+ PD     V+++ 
Sbjct: 327 KELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKA 386

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           L L G+V +   L+  I+   +    D  I  + L GLC+  +  EA KL
Sbjct: 387 LFLAGKVDDAKELFRVIKP--YAMPKDLCICCIFLDGLCKNGYIFEAMKL 434



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 153/299 (51%), Gaps = 4/299 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ +  +M +  ++P+ + ++ +I + C++G +I A +L++ M  I + P++ TY S+I
Sbjct: 255 EAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLI 314

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           KGFC  G L  A  LF  M   G   ++++Y+ L++G C+   +E A++L  EM   G  
Sbjct: 315 KGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVG-- 372

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+V T   +++     G + +A  +   ++      +       + G C  G + EA 
Sbjct: 373 MWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAM 432

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L +++ +         +  L+  L +  +L+ A +LF K+   G++PD +A S MI   
Sbjct: 433 KLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGF 492

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           C  GQV +   L++ +E+ G   S D   +S+L+ G    N   +  +L   M++K +W
Sbjct: 493 CKKGQVDKANILFQKMEENG--CSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVW 549



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 115/230 (50%), Gaps = 2/230 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A  +   MP     PD I YN +I  +C+   +  A +L   M  + ++PD+ T   +
Sbjct: 324 NSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVL 383

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +K    AG+++DA  LF+V+K +    +L      LDG+C+ G +  A++L  E+E    
Sbjct: 384 LKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESY-- 441

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +   ++ T+  +I   C  G ++ A  + +++   G  P+ +  S++I GFC +G +D+A
Sbjct: 442 NMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKA 501

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
             L  K+   G       YS L+     + +L++  +L  +M+   V PD
Sbjct: 502 NILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPD 551



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 2/150 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EAM +  ++  ++++ D   +  +I   C+ G +  A EL + +    + PD + Y SMI
Sbjct: 430 EAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMI 489

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC  G+++ A  LF+ M+ +GC+ +L+ YS L+ G      +E+ ++LL  M ++  D
Sbjct: 490 HGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEK--D 547

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
             P+   Y  V  + C     KE L +L R
Sbjct: 548 VWPDDGIYAIVEDMVCKDEKYKEWLDLLQR 577


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 149/275 (54%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M       N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G  L +++++ G + SV +  ++VL+ G
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSVVT--YNVLMNG 431



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 129/274 (47%), Gaps = 15/274 (5%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+Y+ L++G  RLG ++   
Sbjct: 138 YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 197

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M +A  + D M      PN VT +TLI 
Sbjct: 198 RLKSAMLASG--VQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLID 255

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++   +     Y++L+  L +   LK+A  L  +M   G++P
Sbjct: 256 GHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQP 315

Query: 375 DGLACSVMIRELCLGGQVLEGF-----CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           D +  + +I   C  G +   F      + E+I        +D   ++ L+ GLC++  S
Sbjct: 316 DKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIR-------LDDVAYTALISGLCQEGRS 368

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V+A K+ R ML   +         I+    K GD
Sbjct: 369 VDAEKMLREMLSVGLKPDARTYTMIINEFCKKGD 402



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 111/215 (51%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ ++ ++A  +  +M    L P+ + +  +I   C+ G +  A E+ K M   
Sbjct: 218 LINGLCKENKM-DDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L+ A  L   M   G   + + Y+ L+DG C+ G ++ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTA 336

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E    M +E  +   + V YT++I   C +G   +A  +L  M ++G  P+  T + +I
Sbjct: 337 FEHRKRMIQE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMII 394

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G V S   Y+ L+
Sbjct: 395 NEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 111/238 (46%), Gaps = 4/238 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I G+  +G L DA   +++ + +           +L+ + +L   +      
Sbjct: 71  DIYVFSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ + G   S  +  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 131 EEILECGYPAS--LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+LDE ++L   ++A G       YS L+  L +  ++ +A KLF +ML   + P+G+
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGV 248

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP--DLITYNTLIYGLCKKGDLKQANDL 304



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 110/290 (37%), Gaps = 57/290 (19%)

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVM---KRHGCAANLVA---------------YSALLD 242
           +Y +MI   C    L +A  L +V+   K  G A+ + A               +S L+ 
Sbjct: 21  SYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 80

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G    G +  A+E    + +E   C P   T   V++        K   G  + +   G 
Sbjct: 81  GYLESGFLRDAIECY-RLTRENKLCVP-FDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 138

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
             +    + L+  FC +G++  A  + D +   G   S   Y++L+   +R   L E  +
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           L S MLASGV+PD                                        +SVL+ G
Sbjct: 199 LKSAMLASGVQPDVYT-------------------------------------YSVLING 221

Query: 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
           LC++N   +A KL   ML K +   G     +++   K+G  +L   + K
Sbjct: 222 LCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYK 271



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            V    +I  LC++ R + +A  +LR+M    L+PD   Y  +I  FC+KGD+    +L+
Sbjct: 352 DVAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 410

Query: 188 KGMGLIDLYPDIITYVSMIKG 208
           K M      P ++TY  ++ G
Sbjct: 411 KEMQRDGHVPSVVTYNVLMNG 431


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 174/345 (50%), Gaps = 14/345 (4%)

Query: 106 IKQNPSIIIDVVEAYKE---EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLR 161
           +K+N   I DV   YKE        ++    +  N LC   +L N+A   +  M  + + 
Sbjct: 176 VKENK--IGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKL-NKAEDAIEDMKAWGIS 232

Query: 162 PDTIIYNNVIRLFCEKGD---MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           P+ + YN ++  +C++G    M  A+  MK M    + P+ +T+ ++I GFC    +  A
Sbjct: 233 PNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAA 292

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
              F+ M++ G   N+V Y++L++G+C  G +E A++L  +M   G    PN+VTY ++I
Sbjct: 293 KKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMV--GLGLKPNIVTYNALI 350

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             FC K MMKEA  + D +      PN +T +T+I  +C EG ++E + L   ++  G +
Sbjct: 351 NGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGIL 410

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y+ L+  L R + L+ A++L ++M   G+K D +  +++I  LC   +      L
Sbjct: 411 PNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKL 470

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
             ++  +G     +   ++ L+ G C +     A  +   M K+R
Sbjct: 471 LNEMFNLGL--KPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKER 513



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 34/252 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   +L  EA+ +  KM    L+P+ + YN +I  FC+K  M  A ++   +   
Sbjct: 314 LINGLCNNGKLE-EAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQ 372

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +L P++IT+ +MI  +C  G +E+   L   M   G   N+  Y+ L+ G+CR   ++ A
Sbjct: 373 ELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAA 432

Query: 254 LELLGEMEKEG--GDC-------------------------------SPNVVTYTSVIQI 280
            ELL EME +G  GD                                 PN VTY +++  
Sbjct: 433 KELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDG 492

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +C +G +K AL +  RME     PN VT + LIKG+C    L+ A  L+++++  G   +
Sbjct: 493 YCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPN 552

Query: 341 GGCYSSLVVELV 352
              Y  + +E++
Sbjct: 553 RTTYDIVRLEML 564



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 140/318 (44%), Gaps = 40/318 (12%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C   V    +I   C+   +A  A     +M +  L+P+ + YN++I   C  G +  A 
Sbjct: 270 CPNEVTFNTLIDGFCKDENVA-AAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAI 328

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L   M  + L P+I+TY ++I GFC    +++A  +F  + +     N++ ++ ++D  
Sbjct: 329 DLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAY 388

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G ME    L   M  EG    PNV TY  +I   C K  ++ A  +L+ ME  G   
Sbjct: 389 CKEGMMEEGFSLCSSMLDEG--ILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKG 446

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           + VT + LI G C                                   +  + + AEKL 
Sbjct: 447 DVVTYNILIDGLC-----------------------------------KNDKSRNAEKLL 471

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           ++M   G+KP+ +  + ++   C+ G++     +   +EK     +V +  ++VL+ G C
Sbjct: 472 NEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVT--YNVLIKGYC 529

Query: 425 RKNHSVEAAKLARFMLKK 442
           + N    A  L   ML+K
Sbjct: 530 KINKLEAANGLLNEMLEK 547



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 4/180 (2%)

Query: 122 EEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +EG + +V     +I  LC K  L   A  +L +M    L+ D + YN +I   C+    
Sbjct: 406 DEGILPNVSTYNCLIAGLCRKQDLQ-AAKELLNEMENKGLKGDVVTYNILIDGLCKNDKS 464

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A++L+  M  + L P+ +TY +++ G+C  G+L+ A  +   M++     N+V Y+ L
Sbjct: 465 RNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVL 524

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G C++  +E A  LL EM ++G   +PN  TY  V      KG   +  G L  + ++
Sbjct: 525 IKGYCKINKLEAANGLLNEMLEKG--LNPNRTTYDIVRLEMLEKGFSPDIEGHLYNISSM 582


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 151/275 (54%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ V   + ++ LRP  + +N ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 159 ALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 218

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 219 GLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQS--L 276

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P++++ +TLI G C EG+L+ A++
Sbjct: 277 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFE 336

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G++PD    +++I E C
Sbjct: 337 HRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFC 396

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V  G  L +++++ G + SV +  ++VL+ G
Sbjct: 397 KKGDVWTGSKLLKEMQRDGHVPSVVT--YNVLMNG 429



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 4/231 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A    G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 200 AMHASGVQPDVYTYSVLINGLCKESKM-DDANELFDEMLDKGLVPNGVTFTTLIDGHCKN 258

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M+  G   + ++Y
Sbjct: 259 GRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISY 318

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M +E  +   + V YT++I   C +G   +A  +L  M
Sbjct: 319 TTLIDGCCKEGDLETAFEHRKRMIQE--NIRLDDVAYTALISGLCQEGRSIDAEKMLREM 376

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            ++G  P+  T + +I  FC +G++    +L+ ++   G V S   Y+ L+
Sbjct: 377 LSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 427



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 115/240 (47%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    +  +L+
Sbjct: 69  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKL----KYFKLV 124

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               KE  +C    ++  +  ++  FC +G ++ AL + D +   G  P+ V+ +TL+ G
Sbjct: 125 WXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNG 184

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   + A G       YS L+  L +  ++ +A +LF +ML  G+ P+
Sbjct: 185 YIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPN 244

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 245 GVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQAQDL 302



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            V    +I  LC++ R + +A  +LR+M    LRPDT  Y  +I  FC+KGD+    +L+
Sbjct: 350 DVAYTALISGLCQEGR-SIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLL 408

Query: 188 KGMGLIDLYPDIITYVSMIKG 208
           K M      P ++TY  ++ G
Sbjct: 409 KEMQRDGHVPSVVTYNVLMNG 429


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 188/393 (47%), Gaps = 36/393 (9%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
           QSS+    +M +R    ++ K       D+V   K E CVVS  ++  I     +     
Sbjct: 51  QSSF---GYMVSRLVSANKFKAAE----DIVARMKIENCVVSEDILLSICRGYGRVHRPF 103

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +++ V  KM +FD  P    Y  V+ +  E+  +  A +  K M  I L P + +   +I
Sbjct: 104 DSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLI 163

Query: 207 KGFC-NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           K  C N G ++    +F  M + GC  +   Y  L+ G+CR G ++ A +L  EM ++  
Sbjct: 164 KALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEK-- 221

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           DC+P VVTYTS+I   CG   + EA+  ++ M+  G  PN  T S+L+ G C +G   +A
Sbjct: 222 DCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQA 281

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L + ++A G   +   Y++L+  L + ++++EA +L  +M   G+KPD          
Sbjct: 282 MELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDA--------- 332

Query: 386 LCLGGQVLEGFCLYEDI-EKIGFL----------SSVDSDIH----SVLLLGLCRKNHSV 430
             L G+V+ GFC      E   FL          + +  +IH    + ++ GLC  N+  
Sbjct: 333 -GLYGKVISGFCAVSKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLC-TNYPS 390

Query: 431 EAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            A  L   M  + I ++   +D +V+ L K G+
Sbjct: 391 RAFTLYLSMRSRGISVEVETLDSLVKCLCKKGE 423



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 114/259 (44%), Gaps = 50/259 (19%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA---DELMKGM 190
           +I  LC   R+ +EA  +  +M E D  P  + Y ++I   C   ++  A    E MKG 
Sbjct: 198 LISGLCRFGRI-DEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGK 256

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
           G+    P++ TY S++ G C  GR   A  LF++M   GC  N+V Y+ L+ G+C+   +
Sbjct: 257 GI---EPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT-- 308
           + A+ELL  M  +G    P+   Y  VI  FC     +EA   LD M   G  PNR+T  
Sbjct: 314 QEAVELLDRMNLQG--LKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGITPNRLTWN 371

Query: 309 ---------------------------------------ISTLIKGFCVEGNLDEAYQLI 329
                                                  + +L+K  C +G   +A QL+
Sbjct: 372 IHVKTSNEVVRGLCTNYPSRAFTLYLSMRSRGISVEVETLDSLVKCLCKKGEFQKAVQLV 431

Query: 330 DKVVAGGSVSSGGCYSSLV 348
           D++V  G + + G +  L+
Sbjct: 432 DEIVTDGCIPNKGTWKLLI 450


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 152/297 (51%), Gaps = 4/297 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A+++  +M    L+P    Y  +I  +C  G    A  ++  M +  + P  +TY ++
Sbjct: 351 NLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSAL 410

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + G+C   +L  A  L K ++    + N   Y+ L+DG C+LG + +A ++L  M  +G 
Sbjct: 411 LNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGI 470

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           D  P+V+TY+++I   C  GM+ E   IL RM+  G  PN V  +TL+  FC  G+  EA
Sbjct: 471 D--PDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEA 528

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +    +   G V++   +++L+    R   + EAE+    M    +  D  + + +I  
Sbjct: 529 LKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDS 588

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            C  G VLE F +Y+++ + G+   + +  +  LL GLC+  H V+A +   ++L+K
Sbjct: 589 YCQRGNVLEAFSVYDNMVRHGWPPDICT--YGSLLRGLCQGGHLVQAKEFMVYLLEK 643



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 159/330 (48%), Gaps = 4/330 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            I N   K      A+ +L  M +  +  D   YN +I   C+      A  L+K M  +
Sbjct: 269 TILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREV 328

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +L PD  +Y ++I GF   G++  A  +F  M R     ++  Y+AL+DG CR G  + A
Sbjct: 329 NLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEA 388

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +L EM+  G    P+ +TY++++  +C    +  AL ++  + +   + NR   + LI
Sbjct: 389 RRVLYEMQITG--VRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILI 446

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC  G + +A Q++  ++A G       YS+L+  + +   + E +++ S+M  SGV 
Sbjct: 447 DGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVL 506

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  + ++   C  G   E    + DI + G ++  +S IH+ LL    R+    EA 
Sbjct: 507 PNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVA--NSVIHNALLCSFYREGMIAEAE 564

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           +  ++M + +I       + I++   + G+
Sbjct: 565 QFKQYMSRMKISFDVASFNCIIDSYCQRGN 594



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 134/272 (49%), Gaps = 18/272 (6%)

Query: 160  LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            L  D I YN+++  + + G +   + LM+ M   ++YP   +Y  ++ G+   G+L    
Sbjct: 751  LYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTL 810

Query: 220  GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
             L++ M + G   + V Y  L+ G+C  G +E A++ L +M  EG    P+ + +  +I+
Sbjct: 811  YLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEG--VFPDNLAFDILIK 868

Query: 280  IFCGKGMMKEALGIL----------------DRMEALGCAPNRVTISTLIKGFCVEGNLD 323
             F  K  M  AL +                 + M+ALG  P+ V  S++++G C  G ++
Sbjct: 869  AFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVE 928

Query: 324  EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            EA  +   ++  G V +   +++L+  L +  ++ +A  L   M + G+K D +  +V+I
Sbjct: 929  EAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLI 988

Query: 384  RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
              LC    + +   LYE+++  G L ++ + I
Sbjct: 989  TGLCNKKCICDALDLYEEMKSKGLLPNITTYI 1020



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 194/417 (46%), Gaps = 20/417 (4%)

Query: 31  PAERFYTHLQKNPNNIEKTLATVKAKLDSTCVI-EVLHRCFPSQSQMGIRFFIWAALQSS 89
           PA     +L+    +I +T+ T+   +D  C + EV      S+++  ++  +   +   
Sbjct: 422 PALDLIKYLRSRSISINRTMYTIL--IDGFCQLGEV------SKAKQILKCMLADGIDPD 473

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEA 148
               S + N  C+M  I +   I+       ++ G + + V    ++F  C KA  A EA
Sbjct: 474 VITYSALINGMCKMGMIHETKEIL----SRMQKSGVLPNNVLYTTLVFYFC-KAGHAKEA 528

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
           +     +    L  +++I+N ++  F  +G +  A++  + M  + +  D+ ++  +I  
Sbjct: 529 LKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDS 588

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           +C  G + +A  ++  M RHG   ++  Y +LL G+C+ G + +A E +  + ++   C+
Sbjct: 589 YCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKA--CA 646

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
            +  T  +++   C  G + EAL + ++M      P+  T + L+ GFC  G +  A  L
Sbjct: 647 IDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALIL 706

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML-ASGVKPDGLACSVMIRELC 387
           +  ++  G V     Y+ L+  LV   ++K A  +F +++   G+  D +A + M+    
Sbjct: 707 LQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYL 766

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            GGQ+ E   L  ++ +     S  S  +++L+ G  +K        L R M+K+ I
Sbjct: 767 KGGQINEIERLMRNMHENEVYPSSAS--YNILMHGYIKKGQLSRTLYLYRDMVKEGI 821



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 123/280 (43%), Gaps = 16/280 (5%)

Query: 146  NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            NE   ++R M E ++ P +  YN ++  + +KG +     L + M    + PD +TY  +
Sbjct: 772  NEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLL 831

Query: 206  IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
            I G C  G +E A    + M   G   + +A+  L+        M  AL+L   M K  G
Sbjct: 832  IFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYM-KWVG 890

Query: 266  DCS---------------PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
            D                 P+ V  +S+++  C  G ++EA+ +   +   G  P   T +
Sbjct: 891  DIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFT 950

Query: 311  TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            TL+ G C E  +D+A+ L   + + G       Y+ L+  L   K + +A  L+ +M + 
Sbjct: 951  TLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSK 1010

Query: 371  GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
            G+ P+      +   +   G + +G  L +DIE  G + S
Sbjct: 1011 GLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPS 1050



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 134  VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            ++  LC+  ++  EA+ V   +    + P    +  ++   C++  +  A  L + M   
Sbjct: 917  IVRGLCKCGKV-EEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESC 975

Query: 194  DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             L  D++TY  +I G CN   + DA  L++ MK  G   N+  Y  L   +   G+M+  
Sbjct: 976  GLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDG 1035

Query: 254  LELLGEMEKEG 264
             +LL ++E  G
Sbjct: 1036 EKLLKDIEDRG 1046


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 141/274 (51%), Gaps = 2/274 (0%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G   S+    ++ +   K R    A  V   + ++ LRP  + YN ++  +   GD+ 
Sbjct: 117 ESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 176

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
               L   M    + PD+ TY  +I G C   +++DA  LF  M   G   N V ++ L+
Sbjct: 177 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 236

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG C+ G ++ ALE+  +M  +     P+++TY ++I   C KG +K+A  ++D M   G
Sbjct: 237 DGHCKNGRVDLALEIYKQMLSQS--LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 294

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+++T + LI G C EG+LD A++   +++          Y++L+  L +  R  +AE
Sbjct: 295 LKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 354

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           K+  +ML+ G+KPD    +++I E C  G V +G
Sbjct: 355 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKG 388



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 129/274 (47%), Gaps = 15/274 (5%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC    +  A  +F  + + G   ++V+Y+ L++G  RLG ++   
Sbjct: 120 YPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 179

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M +A  + D M   G  PN VT +TLI 
Sbjct: 180 RLKSAMHASG--VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLID 237

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++   +     Y++L+  L +   LK+A  L  +M   G+KP
Sbjct: 238 GHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKP 297

Query: 375 DGLACSVMIRELCLGGQVLEGF-----CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           D +  + +I   C  G +   F      + E+I        +D   ++ L+ GLC++  S
Sbjct: 298 DKITYTALIDGCCKEGDLDTAFEHRKRMIQENIR-------LDDVAYTALISGLCQEGRS 350

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V+A K+ R ML   +         I+    K GD
Sbjct: 351 VDAEKMLREMLSVGLKPDARTYTMIINEFCKKGD 384


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 161/336 (47%), Gaps = 9/336 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C M RI      + D++E     G  V      ++ +   +    N A W  +K  +  L
Sbjct: 239 CRMGRISDVDRWLKDMIE----RGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGL 294

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ I ++++I   C+ G +  A E+++ M      P++ T+ ++I G C  G  E A  
Sbjct: 295 NPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFR 354

Query: 221 LF-KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           LF K+++      N+  Y+ +++G C+   + RA  LL  M+++G    PN  TYT +I 
Sbjct: 355 LFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQG--LVPNTNTYTCLID 412

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G    A  ++D M   G  PN  T + +I G C +G   EAY+L+ + +  G  +
Sbjct: 413 GHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHA 472

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y+ L+ E  R    K+A  +FS+M   G++PD    +V+I   C   +V E   L+
Sbjct: 473 DKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLF 532

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           E+   +G L + ++  ++ ++ G CR  H   A K 
Sbjct: 533 EEAVGLGLLPTKET--YTSMICGYCRDGHISSAIKF 566



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 151/309 (48%), Gaps = 6/309 (1%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
            S K+M V +  C   R+++   W L+ M E     D      +I  F EKG +  A   
Sbjct: 229 TSYKLMVVGY--CRMGRISDVDRW-LKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWY 285

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
            K    + L P++I + S+I G C  G ++ A  + + M R G   N+  ++AL+DG+C+
Sbjct: 286 FKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCK 345

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G  E+A  L  ++ +   +  PNV TYT +I  +C +  +  A  +L RM+  G  PN 
Sbjct: 346 KGWTEKAFRLFLKLVR-SDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNT 404

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
            T + LI G C  GN   AY+L+D +   G   +   Y++++  L +  R  EA KL  +
Sbjct: 405 NTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRR 464

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
            L SG+  D +  +++I E C      +   ++  + K+G     D   ++VL+   CR+
Sbjct: 465 GLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGL--QPDMHTYNVLIATFCRQ 522

Query: 427 NHSVEAAKL 435
               E+ KL
Sbjct: 523 KKVEESEKL 531



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 183/394 (46%), Gaps = 13/394 (3%)

Query: 58  DSTCVIEVL---HRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIII 114
           ++TC + +     + F +++    + ++   L  +  + S + N  C++  IKQ      
Sbjct: 263 NATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQ----AF 318

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++E    +G   +V     + + LC+K          L+ +   + +P+   Y  +I  
Sbjct: 319 EMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMING 378

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C++  +  A+ L+  M    L P+  TY  +I G C AG    A  L  +M + G   N
Sbjct: 379 YCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPN 438

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+A++DG+C+ G    A +LL    K G     + VTYT +I  FC +   K+AL I
Sbjct: 439 IFTYNAIIDGLCKKGRFPEAYKLLRRGLKSG--LHADKVTYTILISEFCRQTDNKQALAI 496

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
             RM  +G  P+  T + LI  FC +  ++E+ +L ++ V  G + +   Y+S++    R
Sbjct: 497 FSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCR 556

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
              +  A K F KM   G KPD +    +I  LC   ++ E   LYE +   G LS  + 
Sbjct: 557 DGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNG-LSPCEV 615

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
                L    C++  S  A  +    L+K++W++
Sbjct: 616 -TRVTLAYEYCKQGDSATAMIILE-RLEKKLWIR 647



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 137/280 (48%), Gaps = 3/280 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C++ +L N A  +L +M E  L P+T  Y  +I   C+ G+   A ELM  MG     P+
Sbjct: 380 CKEEKL-NRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPN 438

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           I TY ++I G C  GR  +A  L +   + G  A+ V Y+ L+   CR    ++AL +  
Sbjct: 439 IFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFS 498

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
            M K G    P++ TY  +I  FC +  ++E+  + +    LG  P + T +++I G+C 
Sbjct: 499 RMFKVG--LQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCR 556

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           +G++  A +   K+   G       Y +L+  L    +L EA +L+  M+ +G+ P  + 
Sbjct: 557 DGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVT 616

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
              +  E C  G       + E +EK  ++ +V++ I  +
Sbjct: 617 RVTLAYEYCKQGDSATAMIILERLEKKLWIRTVNTLIRKL 656


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 160/329 (48%), Gaps = 10/329 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++ +   KA   NEA  + ++M +  + P  + YN VI   C    +  A EL K M   
Sbjct: 190 ILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSK 249

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P   T+  +I   C  G+L++A  L K M   G   ++V YS L+ G+C +  ++ A
Sbjct: 250 GCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDA 309

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL +M K    C P VVT  ++I   C  G +KEA  +LD M + G +P+ VT +TL+
Sbjct: 310 RHLLEDMVKR--QCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G  + A +L+  +VA G   +   Y++LV  L +  RL EA  +F++M +SG  
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCA 427

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    + +I   C  GQV  G  L+ ++   G   S D  ++  L   LC+   S  A 
Sbjct: 428 PNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI--SPDHVVYGTLAAELCKSGRSARAL 485

Query: 434 KL---ARFMLKKRIWLQGPY---VDKIVE 456
           ++    R  L+   W    Y   VD ++E
Sbjct: 486 EILREGRESLRSEAWGDEVYRFAVDGLLE 514



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 148/285 (51%), Gaps = 4/285 (1%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E ++ PD+  Y  +I    + G +  A  L + +    + P  + Y S+I G C A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            +DA  LF  M R GC  + V Y+ ++D  C+ G +E A +L+ +M ++G    P+VVTY
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGH--VPDVVTY 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            +V+   C    ++EAL + + ME LGC PNR + +T+I G C +  +D+A Q+  ++ A
Sbjct: 119 NTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEA 178

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                    Y  L+  L +  +L EA KLF +ML SG+ P  +  +V+I  +CL   + E
Sbjct: 179 KDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDE 238

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
              L++ +   G   S  +   ++L+   C++    EA +L + M
Sbjct: 239 ALELFKSMRSKGCRPSRFT--FNILIDAHCKRGKLDEAFRLLKRM 281



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 166/349 (47%), Gaps = 17/349 (4%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-------VIFN-----LCEKAR 143
           M  R C  S +  N  I         EE C +  KM++       V +N     LC+ +R
Sbjct: 71  MNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSR 130

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           +  EA+ +  +M      P+   +N +I   C++  +  A ++   M   D+ PD  +Y 
Sbjct: 131 V-EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYG 189

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            +I G   AG+L +A  LF+ M   G   + V Y+ ++ G+C   +++ ALEL   M  +
Sbjct: 190 ILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSK 249

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G  C P+  T+  +I   C +G + EA  +L RM   G  P+ VT STLI G C    +D
Sbjct: 250 G--CRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 307

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +A  L++ +V      +    ++L+  L +  R+KEA ++   M++SG  PD +  + ++
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
              C  GQ      L  D+   G   +V +  ++ L+ GLC+ N   EA
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVT--YTALVSGLCKANRLPEA 414



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 149/310 (48%), Gaps = 4/310 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++ +   KA   N+A  + +K+    + P T+ Y ++I   C       A EL   M   
Sbjct: 15  ILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRR 74

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P  +TY  MI   C  G LE+AC L K M   G   ++V Y+ ++DG+C+   +E A
Sbjct: 75  GCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEA 134

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L L  EME+ G  C+PN  ++ ++I   C +  + +A  +   MEA    P+  +   LI
Sbjct: 135 LLLFNEMERLG--CTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILI 192

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G    G L+EAY+L  +++  G   S   Y+ ++  +     L EA +LF  M + G +
Sbjct: 193 DGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCR 252

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P     +++I   C  G++ E F L + +   G +  V +  +S L+ GLC      +A 
Sbjct: 253 PSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVT--YSTLISGLCSIARVDDAR 310

Query: 434 KLARFMLKKR 443
            L   M+K++
Sbjct: 311 HLLEDMVKRQ 320



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 132/248 (53%), Gaps = 4/248 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNL-CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++ ++ + +GC  S     ++ +  C++ +L +EA  +L++M +    PD + Y+ +I 
Sbjct: 240 LELFKSMRSKGCRPSRFTFNILIDAHCKRGKL-DEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C    +  A  L++ M      P ++T  ++I G C AGR+++A  +   M   G + 
Sbjct: 299 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 358

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++V Y+ L+ G CR G  ERA ELL +M   G   +PNVVTYT+++   C    + EA G
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARG--LAPNVVTYTALVSGLCKANRLPEACG 416

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +  +M++ GCAPN  T + LI GFC  G +D   +L  ++V  G       Y +L  EL 
Sbjct: 417 VFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELC 476

Query: 353 RTKRLKEA 360
           ++ R   A
Sbjct: 477 KSGRSARA 484



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 136/286 (47%), Gaps = 18/286 (6%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C ++R+     ++ D+V   K +     V    +I  LC+  R+  EA  VL  M     
Sbjct: 301 CSIARVDDARHLLEDMV---KRQCKPTVVTQNTLIHGLCKAGRI-KEAREVLDAMVSSGQ 356

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD + YN ++   C  G    A EL+  M    L P+++TY +++ G C A RL +ACG
Sbjct: 357 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACG 416

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +F  MK  GCA NL  Y+AL+ G C  G ++  L+L GEM   G   SP+ V Y ++   
Sbjct: 417 VFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAG--ISPDHVVYGTLAAE 474

Query: 281 FCGKGMMKEALGILD------RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            C  G    AL IL       R EA G    R  +  L++     G ++ A   +  +V 
Sbjct: 475 LCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEA----GKMEMALGFVRDMVR 530

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM--LASGVKPDGLA 378
           GG + +    +SLV  L ++ +  EA  +  ++  LA G K  G A
Sbjct: 531 GGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAYGGKARGKA 576



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 93/193 (48%), Gaps = 6/193 (3%)

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+  +Y  +I      G + +A  +  ++   G  P+ V  ++LI G C+  + D+A +
Sbjct: 7   SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 66

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L   +   G   S   Y+ ++    +   L+EA  L  KM+  G  PD +  + ++  LC
Sbjct: 67  LFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLC 126

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI--- 444
              +V E   L+ ++E++G   +  S  H+ ++LGLC+++   +A ++   M  K I   
Sbjct: 127 KSSRVEEALLLFNEMERLGCTPNRRS--HNTIILGLCQQSKIDQACQVFHEMEAKDIPPD 184

Query: 445 -WLQGPYVDKIVE 456
            W  G  +D + +
Sbjct: 185 SWSYGILIDGLAK 197


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 152/299 (50%), Gaps = 5/299 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           CE   L ++   VL +M E  L P+ ++Y  +I   C+ GD+    +L   MG +D+  +
Sbjct: 162 CEVGYL-DKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVAN 220

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
             TY  +I GF   G  +D   L++ MK  G   N+  Y++++   C  G +  A EL  
Sbjct: 221 QYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFD 280

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM + G  C  NVVTY ++I   C +  + EA  ++ RM+  G +PN ++ +TLI G+C 
Sbjct: 281 EMRERGVAC--NVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCS 338

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            GNLD+A  L +++ + G   S   Y+ L+      K       +  +M A G+ P  + 
Sbjct: 339 IGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVT 398

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
            ++++  L     + + F +Y  +EK G ++  D  I+ VL+ GLC      EA+KL +
Sbjct: 399 YTILMDALVRSDNIEKAFQIYSSMEKAGLVA--DIYIYGVLIHGLCVVGDMKEASKLFK 455



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 166/326 (50%), Gaps = 4/326 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
            +V+   +E G   +V +   + + C K         +  KM E D+  +   Y  +I  
Sbjct: 171 FEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLING 230

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           F + G      EL + M L  + P++ TY SMI   CN G+L +A  LF  M+  G A N
Sbjct: 231 FFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACN 290

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V Y+ L+ G+C+   +  A  L+  M+++G   SPN+++Y ++I  +C  G + +A  +
Sbjct: 291 VVTYNTLIGGLCQERRVLEAERLMCRMKRDG--LSPNLISYNTLIDGYCSIGNLDKASSL 348

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
            ++M++ G +P+  T + LI GF    N      ++ ++ A G   S   Y+ L+  LVR
Sbjct: 349 FNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVR 408

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           +  +++A +++S M  +G+  D     V+I  LC+ G + E   L++ ++++      + 
Sbjct: 409 SDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHL--KPND 466

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFM 439
            I++ ++ G C++  S  A +L + M
Sbjct: 467 VIYNTMIYGYCKEGSSYRALRLLKEM 492



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 153/311 (49%), Gaps = 10/311 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+ N   K  L  + + +  KM    + P+   YN++I   C  G +  A EL   M   
Sbjct: 226 VLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRER 285

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  +++TY ++I G C   R+ +A  L   MKR G + NL++Y+ L+DG C +G++++A
Sbjct: 286 GVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKA 345

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD---RMEALGCAPNRVTIS 310
             L  +M+  G   SP++ TY  +I    G    K + G+ D    MEA G +P++VT +
Sbjct: 346 SSLFNQMKSSGQ--SPSLATYNILI---AGFSEAKNSAGVTDMVREMEARGLSPSKVTYT 400

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            L+       N+++A+Q+   +   G V+    Y  L+  L     +KEA KLF  +   
Sbjct: 401 ILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEM 460

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
            +KP+ +  + MI   C  G       L +++ + G + +V S   ++ +  LC+     
Sbjct: 461 HLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXI--LCKDEKWT 518

Query: 431 EAAKLARFMLK 441
           EA  L + M++
Sbjct: 519 EAEVLLKDMIE 529



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 39/297 (13%)

Query: 114 IDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I++ E  K  G V +V     +I   C   +L N A  +  +M E  +  + + YN +I 
Sbjct: 241 IELYEKMKLTGIVPNVYTYNSMICRCCNDGKL-NNAFELFDEMRERGVACNVVTYNTLIG 299

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C++  ++ A+ LM  M    L P++I+Y ++I G+C+ G L+ A  LF  MK  G + 
Sbjct: 300 GLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSP 359

Query: 233 NL-----------------------------------VAYSALLDGICRLGSMERALELL 257
           +L                                   V Y+ L+D + R  ++E+A ++ 
Sbjct: 360 SLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIY 419

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             MEK G     ++  Y  +I   C  G MKEA  +   ++ +   PN V  +T+I G+C
Sbjct: 420 SSMEKAG--LVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYC 477

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
            EG+   A +L+ ++   G V +   Y+S +  L + ++  EAE L   M+  G+KP
Sbjct: 478 KEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKP 534



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 117/244 (47%), Gaps = 6/244 (2%)

Query: 193 IDLYP-DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           +D +P  ++ + ++I     +   E A      M   G       ++ LL  + +    E
Sbjct: 75  LDSFPTHVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFE 134

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
           +A  +  E +   G+   +V ++  +I+  C  G + +   +L +ME +G +PN V  +T
Sbjct: 135 KAWRVFNETK---GNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTT 191

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           LI G C  G+++   QL  K+     V++   Y+ L+    +    K+  +L+ KM  +G
Sbjct: 192 LIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTG 251

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           + P+    + MI   C  G++   F L++++ + G   +V +  ++ L+ GLC++   +E
Sbjct: 252 IVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVT--YNTLIGGLCQERRVLE 309

Query: 432 AAKL 435
           A +L
Sbjct: 310 AERL 313



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 71/157 (45%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           +N + + D+V   +  G   S     ++ +   ++    +A  +   M +  L  D  IY
Sbjct: 375 KNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIY 434

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
             +I   C  GDM  A +L K +  + L P+ + Y +MI G+C  G    A  L K M  
Sbjct: 435 GVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGE 494

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +G   N+ +Y++ +  +C+      A  LL +M + G
Sbjct: 495 NGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELG 531



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 48/94 (51%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  + + + E  L+P+ +IYN +I  +C++G    A  L+K MG   + P++ +Y S I
Sbjct: 449 EASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTI 508

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
              C   +  +A  L K M   G   ++  ++ +
Sbjct: 509 XILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 542


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 145/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           S +++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYMPSV 416



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L  D I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A +  G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMQASGVQPDVYTYSVLINGLCKESKM-DDANELFDEMLDNGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L  D+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M KE  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            ++G  P   T + +I  FC +G++    +L+ ++   G + S
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPS 415


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 166/311 (53%), Gaps = 5/311 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C +  L N A+ +L +M    L  +  +Y +VI L C KG +  A  +++ M + 
Sbjct: 293 MVHGYCVRGELEN-AVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMH 351

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  D + + ++I GFC+ G L  A  LF+ M++ G AA+ V ++AL++G+CR G ++ A
Sbjct: 352 GVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEA 411

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +L EM  +G D   +VVTYT +I  +C +G M EA  + + M     APN VT + L 
Sbjct: 412 DRVLQEMVDKGLDV--DVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALS 469

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C +G++  A +L+ ++   G   +   Y+SL+  L +   L++A ++ ++M A+G +
Sbjct: 470 DGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHR 529

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            D    + +I  LC  G+      + +++   G   S+ +  ++VL+ G C         
Sbjct: 530 TDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIAT--YNVLMNGFCMSGRVEGGK 587

Query: 434 KLARFMLKKRI 444
           KL  +ML+K +
Sbjct: 588 KLLEWMLEKNV 598



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 159/317 (50%), Gaps = 19/317 (5%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD--IITYVSMIKG 208
           +LR++ ++ L P     N V+         +  DE    + L    PD  + ++  ++K 
Sbjct: 215 LLRRLRQYGLSPSPESCNAVL-------SRLPLDE---AIALFRELPDKNVCSHNILLKA 264

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
             +AGRL+DAC  F  M       ++V Y  ++ G C  G +E A++LL EM  +G +  
Sbjct: 265 LLSAGRLKDACQHFDEM---SSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLES- 320

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
            N   YTSVI + C KG + +AL +L+ M   G A + V  +T+I GFC +G+L  A +L
Sbjct: 321 -NATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRL 379

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            +++   G  +    +++L+  L R   LKEA+++  +M+  G+  D +  +V+I   C 
Sbjct: 380 FEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCK 439

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
            G ++E F ++   E +G   + +   ++ L  GLC++     A +L   M  K + L  
Sbjct: 440 RGNMVEAFRVHN--EMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNV 497

Query: 449 PYVDKIVEHLKKSGDEE 465
              + ++  L K G+ E
Sbjct: 498 YTYNSLINGLCKFGNLE 514



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 142/316 (44%), Gaps = 41/316 (12%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRK 154
           + N  C    +K+   ++ ++V+    +G  V V    V+ +  C++  +  EA  V  +
Sbjct: 398 LINGLCRAGELKEADRVLQEMVD----KGLDVDVVTYTVLIDGYCKRGNMV-EAFRVHNE 452

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M    + P+ + Y  +    C++GD+ AA+EL+  M    L  ++ TY S+I G C  G 
Sbjct: 453 MVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGN 512

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-------------- 260
           LE A  +   M+  G   ++  Y+ L+D +C+ G  +RA  +L EM              
Sbjct: 513 LEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNV 572

Query: 261 ---------EKEGG----------DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
                      EGG          +  PNVVTY S+++ +C    MK    I   M +  
Sbjct: 573 LMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQE 632

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
            APN  T + LIKG C   N+ EA     +++  G   +   YS+L+  L + K+  EA 
Sbjct: 633 VAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEAR 692

Query: 362 KLFSKMLASGV--KPD 375
             F KM   G+  +PD
Sbjct: 693 VFFDKMRNEGLTAEPD 708



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 3/212 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+   L  +AM ++ +M     R D   Y  +I   C+ G+   A  +++ M   
Sbjct: 503 LINGLCKFGNL-EQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDK 561

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P I TY  ++ GFC +GR+E    L + M       N+V Y++L+   C   +M+  
Sbjct: 562 GIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKST 621

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E+   M  +  + +PN  TY  +I+  C    MKEAL     M   G      + S LI
Sbjct: 622 TEIYKGMHSQ--EVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALI 679

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
           +    +    EA    DK+   G  +    YS
Sbjct: 680 RLLNKKKKFSEARVFFDKMRNEGLTAEPDVYS 711



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 2/154 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           ++G   S+    V+ N  C   R+      +L  M E ++RP+ + YN++++ +C   +M
Sbjct: 560 DKGIKPSIATYNVLMNGFCMSGRVEG-GKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNM 618

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
            +  E+ KGM   ++ P+  TY  +IKG C A  +++A    + M   G      +YSAL
Sbjct: 619 KSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSAL 678

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +  + +      A     +M  EG    P+V ++
Sbjct: 679 IRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSF 712


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 170/354 (48%), Gaps = 9/354 (2%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEA 148
           Y + + M +  C+  RI +  S++    +  + +GC  S     V+ N LC+K  L+  A
Sbjct: 235 YTYCTLM-DGLCKADRIDEAVSLL----DEMQIDGCFPSPVTFNVLINGLCKKGDLSRAA 289

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             V   M      P+ + YN +I   C KG +  A  L+  M      P+++TY ++I G
Sbjct: 290 KLV-DNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIING 348

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
               GR  D   +  +M+  G   N   YS L+ G+ + G  + A+ L  EM  +G +  
Sbjct: 349 LVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYEL- 407

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
            N + Y++VI   C  G   +A+ +L  M   GC PN  T S+L+KGF   GN   A ++
Sbjct: 408 -NTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEV 466

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
              +       +  CYS L+  L +  ++KEA  ++++ML  G KPD +A S MI  L +
Sbjct: 467 WKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSI 526

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            G V +   LY ++   G  S  D   +++LL  LC+++    A  L   ML +
Sbjct: 527 AGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDR 580



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 145/320 (45%), Gaps = 8/320 (2%)

Query: 127 VSVKMMKVIFNLCEKAR----LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           VS+    + FNL  KA     L ++A+ V R M      PD   Y  ++   C+   +  
Sbjct: 193 VSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDE 252

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L+  M +   +P  +T+  +I G C  G L  A  L   M   GC  N V Y+ L+ 
Sbjct: 253 AVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIH 312

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C  G +E+A+ LL  M      C PNVVTY ++I     +G   +   +L  ME  G 
Sbjct: 313 GLCLKGKLEKAISLLDRM--VSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGY 370

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
             N    STLI G   EG   EA  L  ++   G   +   YS+++  L R  +  +A +
Sbjct: 371 CVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVE 430

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           + S+M   G  P+   CS +++     G       +++D+ K  F  + +   +SVL+ G
Sbjct: 431 VLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNF--TQNEVCYSVLIHG 488

Query: 423 LCRKNHSVEAAKLARFMLKK 442
           LC+     EA  +   ML K
Sbjct: 489 LCKDGKVKEAMMVWTQMLGK 508



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 125/235 (53%), Gaps = 4/235 (1%)

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
           + N++ ++ ++  +C++G ++ A+++  +M      C P+V TY +++   C    + EA
Sbjct: 196 SPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIR--KCEPDVYTYCTLMDGLCKADRIDEA 253

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           + +LD M+  GC P+ VT + LI G C +G+L  A +L+D +   G + +   Y++L+  
Sbjct: 254 VSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHG 313

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L    +L++A  L  +M++S   P+ +    +I  L   G+ L+G C+   +E+ G+   
Sbjct: 314 LCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGY--C 371

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           V+  ++S L+ GL ++  S EA  L + M  K   L       +++ L + G  +
Sbjct: 372 VNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPD 426



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 127/257 (49%), Gaps = 21/257 (8%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC   +  ++A+ VL +M      P+    +++++ F E G+   A E+ K M   
Sbjct: 415 VIDGLCRDGK-PDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKH 473

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +   + + Y  +I G C  G++++A  ++  M   GC  ++VAYS++++G+   G +E A
Sbjct: 474 NFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDA 533

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++L  EM  +G D  P+VVTY  ++   C +  +  A+ +L+ M   GC P+ VT +  +
Sbjct: 534 MQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFL 593

Query: 314 KGFCVEGNLD---EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           +   +   LD   +  + +D+               LVV L++ +R+  A K+   ML  
Sbjct: 594 R--MLREKLDPPQDGREFLDE---------------LVVRLLKRQRVLGASKIVEVMLQK 636

Query: 371 GVKPDGLACSVMIRELC 387
            + P     + ++  LC
Sbjct: 637 LLPPKHSTWARVVENLC 653


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 142/264 (53%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 157 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 216

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+   M  +    
Sbjct: 217 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQS--L 274

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 275 LPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE 334

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 335 HRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFC 394

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G + SV
Sbjct: 395 KKGDVWKGSKLLKEMQRDGHVPSV 418



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M    L P+ + +  +I   C+ G +  A E+ K M   
Sbjct: 214 LINGLCKESKM-DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQ 272

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L+ A  L   M   G   + + Y+ L+DG C+ G ++ A
Sbjct: 273 SLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTA 332

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E    M +E  +   + V YT++I   C +G   +A  +L  M ++G  PN  T + +I
Sbjct: 333 FEHRKRMIQE--NIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMII 390

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G V S   Y+ L+
Sbjct: 391 NEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 425



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 112/240 (46%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +  L DA   +++ + H           +L+ + +L    +  +L+
Sbjct: 67  DIFVFSGLITAYLESEFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKL----KYFKLV 122

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               K   +C    ++  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 123 WGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 182

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   ++A G       YS L+  L +  ++ +A +LF +ML  G+ P+
Sbjct: 183 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPN 242

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 243 GVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLP--DLITYNTLIYGLCKKGDLKQAHHL 300



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            V    +I  LC++ R + +A  +LR+M    L+P+   Y  +I  FC+KGD+    +L+
Sbjct: 348 DVAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLL 406

Query: 188 KGMGLIDLYPDIITYVSMIKG 208
           K M      P ++TY  ++ G
Sbjct: 407 KEMQRDGHVPSVVTYNVLMNG 427


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 151/278 (54%), Gaps = 3/278 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++ N C+   +   A  V   + ++ LRP  + +N ++  + + GD+     L   M   
Sbjct: 142 LMHNFCKGGEIX-LAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQAS 200

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ TY  +I G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++ A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +E+  +M  +     P+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI
Sbjct: 261 MEIYRQMLSQS--LLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C EG+L+ A++   +++          Y++L+  L +  R  +AEK+  +ML+ G+K
Sbjct: 319 DGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVGLK 378

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           P+    +++I E C  G V  G  L +++++ G+L +V
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPNV 416



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++    ++  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANALFDEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + R+M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+  +C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  PN VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPNVVT 418


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 138/264 (52%), Gaps = 2/264 (0%)

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R  ++AM VL KM E  + PD + YN++I   C  G+  +A  L+  M    L PD  TY
Sbjct: 441 RNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTY 500

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            SMI   C + R+E+AC LF  +++     N+V Y+AL+DG C+ G +  A  +L +M  
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLS 560

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
           +  +C PN +T+ ++I   C  G +KEA  + ++M  +   P   T + LI     +G+ 
Sbjct: 561 K--NCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDF 618

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           D AY+   ++++ G+      Y++ +    R  RL++AE + +KM  +GV PD    S +
Sbjct: 619 DHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSL 678

Query: 383 IRELCLGGQVLEGFCLYEDIEKIG 406
           I+     G+    F + + +   G
Sbjct: 679 IKGYGDLGRTNSAFVVLKRMHDTG 702



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 166/327 (50%), Gaps = 7/327 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++V+  +E+G   ++    V+ + LC + +L  +A  +L +M E  L P+ I YN +I 
Sbjct: 343 LNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKL-EKARELLGQMLEKGLMPNVITYNALIN 401

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            +C++G +  A ++++ M   +L P+  TY  +IKG+C    +  A G+   M       
Sbjct: 402 GYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLP 460

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++V Y++L+DG CR G+ + A  LL  M   G    P+  TYTS+I   C    ++EA  
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG--LVPDPWTYTSMIDSLCKSKRVEEACD 518

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D +E     PN V  + LI G+C  G ++EA+ +++K+++   + +   +++L+  L 
Sbjct: 519 LFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLC 578

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              +LKEA  L  KM+   ++P     +++I  L   G     +  ++ +   G  +  D
Sbjct: 579 TDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSG--TKPD 636

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +  ++  +   CR+    +A  +   M
Sbjct: 637 AHTYTTFIQTYCREGRLQDAEDMVAKM 663



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 155/313 (49%), Gaps = 8/313 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +D+    K++ C  +V+   V+   LC   R  +EA+ ++++M E  ++P+   Y  +I 
Sbjct: 308 MDLFVKMKDDDCYPTVRTYTVLIKALCGSER-KSEALNLVKEMEEKGIKPNIHTYTVLID 366

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C +  +  A EL+  M    L P++ITY ++I G+C  G +EDA  + ++M+      
Sbjct: 367 SLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRP 426

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y+ L+ G C+  ++ +A+ +L +M +      P+VVTY S+I   C  G    A  
Sbjct: 427 NTRTYNELIKGYCK-RNVHKAMGVLNKMLER--KVLPDVVTYNSLIDGQCRSGNFDSAYR 483

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L  M   G  P+  T +++I   C    ++EA  L D +     + +   Y++L+    
Sbjct: 484 LLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYC 543

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  ++ EA  +  KML+    P+ L  + +I  LC  G++ E   L E + KI    +V 
Sbjct: 544 KAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVS 603

Query: 413 SD---IHSVLLLG 422
           +D   IH +L  G
Sbjct: 604 TDTILIHRLLKDG 616



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 152/313 (48%), Gaps = 19/313 (6%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            + N   +  L +E   V  +M E  + P+   YN ++  +C+ G++  A++ +  +   
Sbjct: 188 TLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEA 247

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD  TY S+I G+C    L+ A  +FK M   GC  N VAY+ L+ G+C    ++ A
Sbjct: 248 GLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEA 307

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++L  +M+ +  DC P V TYT +I+  CG     EAL ++  ME  G  PN  T + LI
Sbjct: 308 MDLFVKMKDD--DCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLI 365

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C +  L++A +L+ +++  G + +   Y++L+    +   +++A  +   M +  ++
Sbjct: 366 DSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLR 425

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV-------DSDIHSVLLLGLCRK 426
           P+    + +I+          G+C     + +G L+ +       D   ++ L+ G CR 
Sbjct: 426 PNTRTYNELIK----------GYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRS 475

Query: 427 NHSVEAAKLARFM 439
            +   A +L   M
Sbjct: 476 GNFDSAYRLLSLM 488



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 132/299 (44%), Gaps = 22/299 (7%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           S+    +I  LC   +L  EA  +  KM + DL+P       +I    + GD   A    
Sbjct: 567 SLTFNALIHGLCTDGKL-KEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRF 625

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M      PD  TY + I+ +C  GRL+DA  +   MK +G + +L  YS+L+ G   L
Sbjct: 626 QQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDL 685

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF---------------CGKGMMKE--- 289
           G    A  +L  M   G  C P+  T+ S+I+                 C    M E   
Sbjct: 686 GRTNSAFVVLKRMHDTG--CEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDI 743

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLV 348
            + +L++M   G  PN  +   L+ G C  GNL  A ++ D +     +S S   +++L+
Sbjct: 744 VVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALL 803

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
               + ++  EA K+   M+  G  P   +C ++I  L   G+   G  +++++ + G+
Sbjct: 804 SCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGY 862



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 85/182 (46%), Gaps = 6/182 (3%)

Query: 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM-KVIFNLCEKARLANEAMWVLRKMPEF 158
            C MS + +   I+++++E   E G   + K   K++  +CE   L   A  V   M + 
Sbjct: 732 VCVMSNMMEF-DIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNL-RVAEKVFDHMQQK 789

Query: 159 D-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           + + P  +++N ++   C+      A +++  M  +   P + +   +I      G  E 
Sbjct: 790 EGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKER 849

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
              +F+ + + G   + +A+  ++DG+ + G +E   EL   MEK G  C+ +  TY+ +
Sbjct: 850 GTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNG--CTFSSQTYSLL 907

Query: 278 IQ 279
           I+
Sbjct: 908 IE 909


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 163/309 (52%), Gaps = 9/309 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V +  ++   C + R++ +A+ ++ KM E   +PD + YN +I   C+   +  A +  K
Sbjct: 156 VTIGSLVNGFCRRNRVS-DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFK 214

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +    + P+++TY +++ G CN+ R  DA  L   M +     N++ YSALLD   + G
Sbjct: 215 EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNG 274

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  A EL  EM +   D  P++VTY+S+I   C    + EA  + D M + GC  + V+
Sbjct: 275 KVLEAKELFEEMVRMSID--PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVS 332

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI GFC    +++  +L  ++   G VS+   Y++L+    +   + +A++ FS+M 
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRK 426
             G+ PD    ++++  LC  G++ +   ++ED++K      +D DI  ++ ++ G+C+ 
Sbjct: 393 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQK----REMDLDIVTYTTVIRGMCKT 448

Query: 427 NHSVEAAKL 435
               EA  L
Sbjct: 449 GKVEEAWSL 457



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 160/318 (50%), Gaps = 4/318 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L KM +    PD +   +++  FC +  +  A  L+  M  I   PDI+ Y ++I 
Sbjct: 139 ALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIID 198

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             C   R+ DA   FK ++R G   N+V Y+AL++G+C       A  LL +M K+    
Sbjct: 199 SLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK--KI 256

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +PNV+TY++++  F   G + EA  + + M  +   P+ VT S+LI G C+   +DEA Q
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 316

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           + D +V+ G ++    Y++L+    + KR+++  KLF +M   G+  + +  + +I+   
Sbjct: 317 MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFF 376

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
             G V +    +  ++  G   S D   +++LL GLC      +A  +   M K+ + L 
Sbjct: 377 QAGDVDKAQEFFSQMDFFGI--SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLD 434

Query: 448 GPYVDKIVEHLKKSGDEE 465
                 ++  + K+G  E
Sbjct: 435 IVTYTTVIRGMCKTGKVE 452



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 150/282 (53%), Gaps = 3/282 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC  +R ++ A  +L  M +  + P+ I Y+ ++  F + G ++ A EL +
Sbjct: 226 VTYTALVNGLCNSSRWSDAAR-LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE 284

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M  + + PDI+TY S+I G C   R+++A  +F +M   GC A++V+Y+ L++G C+  
Sbjct: 285 EMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAK 344

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E  ++L  EM + G     N VTY ++IQ F   G + +A     +M+  G +P+  T
Sbjct: 345 RVEDGMKLFREMSQRG--LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWT 402

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + L+ G C  G L++A  + + +           Y++++  + +T +++EA  LF  + 
Sbjct: 403 YNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLS 462

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             G+KPD +  + M+  LC  G + E   LY  +++ G + +
Sbjct: 463 LKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 166/340 (48%), Gaps = 12/340 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVE-AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           + N  C  +R+    S++  +VE  YK +     V    +I +LC+  R+ N+A    ++
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPD----IVAYNAIIDSLCKTKRV-NDAFDFFKE 215

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           +    +RP+ + Y  ++   C       A  L+  M    + P++ITY +++  F   G+
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           + +A  LF+ M R     ++V YS+L++G+C    ++ A ++   M  +G  C  +VV+Y
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG--CLADVVSY 333

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            ++I  FC    +++ + +   M   G   N VT +TLI+GF   G++D+A +   ++  
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 393

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y+ L+  L     L++A  +F  M    +  D +  + +IR +C  G+V E
Sbjct: 394 FGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 453

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN--HSVEA 432
            + L+  +   G    + +  ++ ++ GLC K   H VEA
Sbjct: 454 AWSLFCSLSLKGLKPDIVT--YTTMMSGLCTKGLLHEVEA 491



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 17/232 (7%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC+  V     + N   KA+   + M + R+M +  L  +T+ YN +I+ F + GD+  
Sbjct: 324 KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDK 383

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E    M    + PDI TY  ++ G C+ G LE A  +F+ M++     ++V Y+ ++ 
Sbjct: 384 AQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 443

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C+ G +E A  L   +  +G    P++VTYT+++   C KG++ E   +  +M+  G 
Sbjct: 444 GMCKTGKVEEAWSLFCSLSLKG--LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-------SVSSGGCYSSL 347
             N  T+S        +G++  + +LI K+++ G        + SG C  +L
Sbjct: 502 MKNDCTLS--------DGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKAL 545



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 148/318 (46%), Gaps = 4/318 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A+ +   M +    P  + +N ++    +         L K M ++ +  D+ T+  +
Sbjct: 67  NDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIV 126

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC   ++  A  +   M + G   + V   +L++G CR   +  A+ L+ +M + G 
Sbjct: 127 INCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG- 185

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P++V Y ++I   C    + +A      +E  G  PN VT + L+ G C      +A
Sbjct: 186 -YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L+  ++      +   YS+L+   V+  ++ EA++LF +M+   + PD +  S +I  
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           LCL  ++ E   +++ +   G L+ V S  ++ L+ G C+     +  KL R M ++ + 
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVS--YNTLINGFCKAKRVEDGMKLFREMSQRGLV 362

Query: 446 LQGPYVDKIVEHLKKSGD 463
                 + +++   ++GD
Sbjct: 363 SNTVTYNTLIQGFFQAGD 380



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 123/266 (46%), Gaps = 43/266 (16%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L DA  LF  M +     ++V ++ LL  I +L   +  + L  +ME  G     ++ T
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLG--IRNDLYT 122

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           +  VI  FC    +  AL IL +M  LG  P+RVTI +L+ GFC    + +A  L+DK+V
Sbjct: 123 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC------ 387
             G       Y++++  L +TKR+ +A   F ++   G++P+ +  + ++  LC      
Sbjct: 183 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 242

Query: 388 -----------------------------LGGQVLEGFCLYEDIEKIGFLSSVDSDI--H 416
                                          G+VLE   L+E++ ++    S+D DI  +
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM----SIDPDIVTY 298

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKK 442
           S L+ GLC  +   EA ++   M+ K
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSK 324


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 167/332 (50%), Gaps = 8/332 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC  +R    A+ V+ KM +F   PD +  +++I  FC+   +  A +L+  M  +
Sbjct: 51  VINCLCRCSRFV-IALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEM 109

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD++ Y ++I G C  G + DA  LF  M+R G  A+ V Y++L+ G+C  G    A
Sbjct: 110 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 169

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L+ +M     D  PNV+T+T+VI +F  +G   EA+ + + M      P+  T ++LI
Sbjct: 170 ARLMRDMVMR--DIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLI 227

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C+ G +DEA Q++D +V  G +     Y++L+    ++KR+ E  KLF +M   G+ 
Sbjct: 228 NGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLV 287

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            D +  + +I+     G+      ++  ++     S  +   +S+LL GLC      +A 
Sbjct: 288 GDTITYNTIIQGYFQAGRPDAAQEIFSRMD-----SRPNIRTYSILLYGLCMNWRVEKAL 342

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            L   M K  I L     + ++  + K G+ E
Sbjct: 343 VLFENMQKSEIELDITTYNIVIHGMCKIGNVE 374



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 171/346 (49%), Gaps = 11/346 (3%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + N  C+ +R+       ID+V   +E G    V +   I +   K  L N+A+ +  
Sbjct: 84  SSLINGFCQGNRVFD----AIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFD 139

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M    +R D + YN+++   C  G    A  LM+ M + D+ P++IT+ ++I  F   G
Sbjct: 140 RMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEG 199

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +  +A  L++ M R     ++  Y++L++G+C  G ++ A ++L  M  +G  C P+VVT
Sbjct: 200 KFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG--CLPDVVT 257

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y ++I  FC    + E   +   M   G   + +T +T+I+G+   G  D A ++  ++ 
Sbjct: 258 YNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMD 317

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           +  ++ +   YS L+  L    R+++A  LF  M  S ++ D    +++I  +C  G V 
Sbjct: 318 SRPNIRT---YSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVE 374

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + + L+  +   G    V S  ++ ++ G CRK    ++  L R M
Sbjct: 375 DAWDLFRSLSCKGLKPDVVS--YTTMISGFCRKRQWDKSDLLYRKM 418



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 124/245 (50%), Gaps = 4/245 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ +Y  +I   C   R   A  +   M + G   ++V  S+L++G C+   +  A++L+
Sbjct: 44  DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLV 103

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +ME+ G    P+VV Y ++I   C  G++ +A+ + DRME  G   + VT ++L+ G C
Sbjct: 104 SKMEEMG--FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLC 161

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G   +A +L+  +V    V +   +++++   V+  +  EA KL+ +M    V PD  
Sbjct: 162 CSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVF 221

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I  LC+ G+V E   + + +   G L  V +  ++ L+ G C+     E  KL R
Sbjct: 222 TYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVT--YNTLINGFCKSKRVDEGTKLFR 279

Query: 438 FMLKK 442
            M ++
Sbjct: 280 EMAQR 284



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 114/229 (49%), Gaps = 5/229 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EAM +  +M    + PD   YN++I   C  G +  A +++  M      PD++TY ++
Sbjct: 202 SEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTL 261

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GFC + R+++   LF+ M + G   + + Y+ ++ G  + G  + A E+   M     
Sbjct: 262 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM----- 316

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           D  PN+ TY+ ++   C    +++AL + + M+      +  T + +I G C  GN+++A
Sbjct: 317 DSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDA 376

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           + L   +   G       Y++++    R ++  +++ L+ KM   G+ P
Sbjct: 377 WDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 32/174 (18%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC+  V     + N   K++  +E   + R+M +  L  DTI YN +I+ + + G   A
Sbjct: 249 KGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDA 308

Query: 183 ADE--------------------------------LMKGMGLIDLYPDIITYVSMIKGFC 210
           A E                                L + M   ++  DI TY  +I G C
Sbjct: 309 AQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMC 368

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
             G +EDA  LF+ +   G   ++V+Y+ ++ G CR    +++  L  +M+++G
Sbjct: 369 KIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 422



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 39/212 (18%)

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++V +S +L  I +  + +  + L   ME  G     ++ +Y  VI   C       AL 
Sbjct: 9   SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCG--IGHDLYSYNIVINCLCRCSRFVIALS 66

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           ++ +M   G  P+ VT+S+LI GFC +GN                               
Sbjct: 67  VVGKMMKFGYEPDVVTVSSLINGFC-QGN------------------------------- 94

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              R+ +A  L SKM   G +PD +  + +I   C  G V +   L++ +E+ G  +  D
Sbjct: 95  ---RVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRA--D 149

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +  ++ L+ GLC      +AA+L R M+ + I
Sbjct: 150 AVTYNSLVAGLCCSGRWSDAARLMRDMVMRDI 181



 Score = 38.9 bits (89), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ V  S ++       N D    L   +   G       Y+ ++  L R  R   A  +
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
             KM+  G +PD +  S +I   C G +V +   L   +E++GF    D  I++ ++ G 
Sbjct: 68  VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRP--DVVIYNTIIDGS 125

Query: 424 CRKNHSVEAAKL 435
           C+     +A +L
Sbjct: 126 CKIGLVNDAVEL 137


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 166/352 (47%), Gaps = 36/352 (10%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +E++ +L +M      P    Y++++R   +   +  A  L   M     +PD + +  +
Sbjct: 97  DESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYEL 156

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C AG+++DA   FK M +HGC  N+  Y+ LL G+C  G +E+A  L  EM+    
Sbjct: 157 ILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSH-- 214

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            CSP+VVTY +++   C    ++E   + + M A G  PN +T STLI G C  G L++A
Sbjct: 215 SCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKA 274

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            ++   ++  G   +   Y++L+  L R +++ +A +LF KM  + + PD +A + +I  
Sbjct: 275 LEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAG 334

Query: 386 LCLGGQVLEGFCLYEDIE--------------------KIGFLS--------------SV 411
            C  G + E   LY ++                     K+G L               + 
Sbjct: 335 YCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAA 394

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           DS  + +L+ GL R     EA ++ + M +K+  L        V  L K+G+
Sbjct: 395 DSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGN 446



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 148/317 (46%), Gaps = 39/317 (12%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           ++I  LC+  ++  +A    ++MP+   +P+  +YN ++   C  G +  A+ L   M  
Sbjct: 155 ELILGLCQAGKV-KDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKS 213

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               PD++TY +++   C A R+E+ C LF+ M+  G   N++ +S L+ G+CR G +E+
Sbjct: 214 HSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEK 273

Query: 253 ALELLGEMEKEGGDCSPNVVTYT-----------------------------------SV 277
           ALE+ G M + G  C PN  TYT                                   S+
Sbjct: 274 ALEVFGSMLEAG--CKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSL 331

Query: 278 IQIFCGKGMMKEALGILDRMEA-LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           I  +C +G M EA  +   M    G  P  VT +TLI GFC  G L  A +L+ ++   G
Sbjct: 332 IAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKG 391

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
             +    Y  L+  L R  +L EA +++ +M       D ++C   +  LC  G + + +
Sbjct: 392 LAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAY 451

Query: 397 CLYEDIEKIGFLSSVDS 413
            ++E   K G + + ++
Sbjct: 452 AVFEATRKSGAVPNPET 468



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 159/330 (48%), Gaps = 4/330 (1%)

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           P     V+E     GC   V     +     ++    +A  V + M E   +PD + Y+ 
Sbjct: 26  PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 85

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I    + G +  + +++  M +    P +  Y S+++    A R++ A  LF  M R G
Sbjct: 86  LIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGG 145

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              + + +  L+ G+C+ G ++ A E   +M K G  C PNV  Y  ++   C  G +++
Sbjct: 146 HHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG--CQPNVPVYNVLLHGLCSSGQLEQ 203

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  +   M++  C+P+ VT +TL+   C    ++E  +L + + A G V +   +S+L+ 
Sbjct: 204 ANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIH 263

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L RT  L++A ++F  ML +G KP+    + +I  LC   +V++   L+E + +     
Sbjct: 264 GLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACI-- 321

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
             D+  ++ L+ G C++    EA KL R M
Sbjct: 322 PPDAVAYNSLIAGYCKRGSMDEAEKLYREM 351



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 130/274 (47%), Gaps = 9/274 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C+  R+++       + EA +  G V +V     +I  LC    L  +A+ V   M E  
Sbjct: 231 CKARRVEEG----CKLFEAMRAAGYVPNVITFSTLIHGLCRTGEL-EKALEVFGSMLEAG 285

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            +P+   Y  +I   C    +I A EL + M    + PD + Y S+I G+C  G +++A 
Sbjct: 286 CKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAE 345

Query: 220 GLFKVMKR-HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
            L++ M    G    +V ++ L+DG C+LG + RA EL+ EM  +G   + +  TY  +I
Sbjct: 346 KLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKG--LAADSCTYRILI 403

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                   + EAL +  +M       + V+  + + G C  GN+D+AY + +     G+V
Sbjct: 404 AGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAV 463

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
            +   +  L   L++  R+++A+KL     A  +
Sbjct: 464 PNPETFRILSESLIKLGRVEDAQKLMEPAKARDI 497



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 137/271 (50%), Gaps = 4/271 (1%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M + ++  +   Y+++I+   ++     + ++++ M      PD+  +  +++GF  +  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +E A  +++ M   G   + V+Y  L+ G+ ++G ++ +L++L EM   G   +P++  Y
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQ--TPSMQAY 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           +S+++       +  A  + D M   G  P+R+    LI G C  G + +A +   ++  
Sbjct: 119 SSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPK 178

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G   +   Y+ L+  L  + +L++A  LF++M +    PD +  + ++  +C   +V E
Sbjct: 179 HGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEE 238

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           G  L+E +   G++ +V +   S L+ GLCR
Sbjct: 239 GCKLFEAMRAAGYVPNVIT--FSTLIHGLCR 267



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 105/211 (49%), Gaps = 4/211 (1%)

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+    AAN+  YS+++  + +    E + ++L EM   G  C+P+V  +  V+Q F   
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAG--CNPDVFAFNGVMQGFARS 58

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             M++A  +   M   G  P+ V+   LI G    G LDE+ +++ ++V  G   S   Y
Sbjct: 59  NNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAY 118

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           SSLV  L + +R+  A  LF +M+  G  PD L    +I  LC  G+V +    ++ + K
Sbjct: 119 SSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPK 178

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            G   +V   +++VLL GLC      +A  L
Sbjct: 179 HGCQPNV--PVYNVLLHGLCSSGQLEQANTL 207


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 152/299 (50%), Gaps = 5/299 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           CE   L ++   VL +M E  L P+ ++Y  +I   C+ GD+    +L   MG +D+  +
Sbjct: 175 CEVGYL-DKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVAN 233

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
             TY  +I GF   G  +D   L++ MK  G   N+  Y++++   C  G +  A EL  
Sbjct: 234 QYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFD 293

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM + G  C  NVVTY ++I   C +  + EA  ++ RM+  G +PN ++ +TLI G+C 
Sbjct: 294 EMRERGVAC--NVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCS 351

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            GNLD+A  L +++ + G   S   Y+ L+      K       +  +M A G+ P  + 
Sbjct: 352 IGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVT 411

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
            ++++  L     + + F +Y  +EK G ++  D  I+ VL+ GLC      EA+KL +
Sbjct: 412 YTILMDALVRSDNIEKAFQIYSSMEKAGLVA--DIYIYGVLIHGLCVVGDMKEASKLFK 468



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 166/326 (50%), Gaps = 4/326 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
            +V+   +E G   +V +   + + C K         +  KM E D+  +   Y  +I  
Sbjct: 184 FEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLING 243

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           F + G      EL + M L  + P++ TY SMI   CN G+L +A  LF  M+  G A N
Sbjct: 244 FFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACN 303

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V Y+ L+ G+C+   +  A  L+  M+++G   SPN+++Y ++I  +C  G + +A  +
Sbjct: 304 VVTYNTLIGGLCQERRVLEAERLMCRMKRDG--LSPNLISYNTLIDGYCSIGNLDKASSL 361

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
            ++M++ G +P+  T + LI GF    N      ++ ++ A G   S   Y+ L+  LVR
Sbjct: 362 FNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVR 421

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           +  +++A +++S M  +G+  D     V+I  LC+ G + E   L++ ++++      + 
Sbjct: 422 SDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHL--KPND 479

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFM 439
            I++ ++ G C++  S  A +L + M
Sbjct: 480 VIYNTMIYGYCKEGSSYRALRLLKEM 505



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 153/311 (49%), Gaps = 10/311 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+ N   K  L  + + +  KM    + P+   YN++I   C  G +  A EL   M   
Sbjct: 239 VLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRER 298

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  +++TY ++I G C   R+ +A  L   MKR G + NL++Y+ L+DG C +G++++A
Sbjct: 299 GVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKA 358

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD---RMEALGCAPNRVTIS 310
             L  +M+  G   SP++ TY  +I    G    K + G+ D    MEA G +P++VT +
Sbjct: 359 SSLFNQMKSSGQ--SPSLATYNILI---AGFSEAKNSAGVTDMVREMEARGLSPSKVTYT 413

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            L+       N+++A+Q+   +   G V+    Y  L+  L     +KEA KLF  +   
Sbjct: 414 ILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEM 473

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
            +KP+ +  + MI   C  G       L +++ + G + +V S   ++ +  LC+     
Sbjct: 474 HLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQI--LCKDEKWT 531

Query: 431 EAAKLARFMLK 441
           EA  L + M++
Sbjct: 532 EAEVLLKDMIE 542



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 39/297 (13%)

Query: 114 IDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I++ E  K  G V +V     +I   C   +L N A  +  +M E  +  + + YN +I 
Sbjct: 254 IELYEKMKLTGIVPNVYTYNSMICRCCNDGKL-NNAFELFDEMRERGVACNVVTYNTLIG 312

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C++  ++ A+ LM  M    L P++I+Y ++I G+C+ G L+ A  LF  MK  G + 
Sbjct: 313 GLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSP 372

Query: 233 NL-----------------------------------VAYSALLDGICRLGSMERALELL 257
           +L                                   V Y+ L+D + R  ++E+A ++ 
Sbjct: 373 SLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIY 432

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             MEK G     ++  Y  +I   C  G MKEA  +   ++ +   PN V  +T+I G+C
Sbjct: 433 SSMEKAG--LVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYC 490

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
            EG+   A +L+ ++   G V +   Y+S +  L + ++  EAE L   M+  G+KP
Sbjct: 491 KEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKP 547



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 118/244 (48%), Gaps = 6/244 (2%)

Query: 193 IDLYP-DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           +D +P  ++ + ++I     +   E A   F  M   G       ++ LL  + +    E
Sbjct: 88  LDSFPTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFE 147

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
           +A  +  E +   G+   +V ++  +I+  C  G + +   +L +ME +G +PN V  +T
Sbjct: 148 KAWRVFNETK---GNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTT 204

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           LI G C  G+++   QL  K+     V++   Y+ L+    +    K+  +L+ KM  +G
Sbjct: 205 LIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTG 264

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           + P+    + MI   C  G++   F L++++ + G   +V +  ++ L+ GLC++   +E
Sbjct: 265 IVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVT--YNTLIGGLCQERRVLE 322

Query: 432 AAKL 435
           A +L
Sbjct: 323 AERL 326



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 71/157 (45%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           +N + + D+V   +  G   S     ++ +   ++    +A  +   M +  L  D  IY
Sbjct: 388 KNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIY 447

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
             +I   C  GDM  A +L K +  + L P+ + Y +MI G+C  G    A  L K M  
Sbjct: 448 GVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGE 507

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +G   N+ +Y++ +  +C+      A  LL +M + G
Sbjct: 508 NGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELG 544



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  + + + E  L+P+ +IYN +I  +C++G    A  L+K MG   + P++ +Y S I
Sbjct: 462 EASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTI 521

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
           +  C   +  +A  L K M   G   ++  ++ +
Sbjct: 522 QILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 555


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 143/266 (53%), Gaps = 2/266 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA GLF  M   G   N V ++ L+ G C+   ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 333 HRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDS 413
             G V  G  L +++++ G + SV S
Sbjct: 393 KKGDVWTGSKLLKEMQRDGHVPSVVS 418



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++    +G V + V    +I   C K 
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLD----KGLVPNGVTFTTLIAGHC-KN 254

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R  + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 255 RRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P+  TYT +I  FC KG +     +L  M+  G  P+ V+
Sbjct: 375 VG--LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVS 418



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A    G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMHASGVQPDVYTYSVLINGLCKESKM-DDANGLFDEMLDKGLVPNGVTFTTLIAGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
             +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 RRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M +E  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGCCKEGDLETAFEHRKRMIQE--NIRLDDVAYTALISGLCQEGRYLDAEKVLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            ++G  P+  T + +I  FC +G++    +L+ ++   G V S
Sbjct: 373 LSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPS 415



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 112/240 (46%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  DC    ++  +  ++  FC +G ++ A  + + +   G  P+ V+ +TL+ G
Sbjct: 121 WGFYEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   + A G       YS L+  L +  ++ +A  LF +ML  G+ P+
Sbjct: 181 YIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C   +V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 241 GVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQAHDL 298


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 147/278 (52%), Gaps = 3/278 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+   C++  +   A  V   + ++ LRP  + +N ++  +   GD+     L   M   
Sbjct: 142 VMHRFCKEGEM-RRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHAS 200

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ TY  +I G C   ++++A  LF  M   G   N V ++ L+D  C+ G ++ A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSA 260

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +E+  +M  +G   SP+++TY ++I   C KG +K+   ++D M   G  P+++T +TLI
Sbjct: 261 MEIYKQMLSQG--FSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLI 318

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C EG+L+ A++   +++          Y++LV  L +  R  +AEK+F +ML+ G+K
Sbjct: 319 DGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLK 378

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           PD    +++I E C  G V     L +++++ G +  V
Sbjct: 379 PDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCV 416



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 131/278 (47%), Gaps = 5/278 (1%)

Query: 196 YPDIITYVSMI-KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + +++   FC  G +  A  +F  + + G   ++V+++ L++G  RLG ++   
Sbjct: 132 YPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGF 191

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  + EA  + + M   G  PN VT +TLI 
Sbjct: 192 RLKSAMHASG--VQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLID 249

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
             C  G +D A ++  ++++ G       Y++L+  L +   LK+   L  +M  +G+KP
Sbjct: 250 VHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKP 309

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  + +I   C  G +   F   + + K      +D+  ++ L+ GLC++  + +A K
Sbjct: 310 DKITYTTLIDGCCKEGDLETAFEFRKRMIKESI--RLDNVAYTALVSGLCQEGRADDAEK 367

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
           + R ML   +         I+    K GD    + L K
Sbjct: 368 MFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLK 405



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR 143
           + +Q      S + N  C+ S++ +   +  ++++     G V +      + ++  K  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKVDEANELFNEMLD----RGLVPNGVTFTTLIDVHCKNG 255

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           + + AM + ++M      PD I YN +I   C+KGD+     L+  M +  L PD ITY 
Sbjct: 256 MVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYT 315

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G  + A ++  EM   
Sbjct: 316 TLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSV 375

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           G    P+  TYT +I  FC KG ++ A  +L  M+  G  P  VT
Sbjct: 376 G--LKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 145/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    +  D+ TY  +I 
Sbjct: 155 AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C A +++DA  LF  M  +G   N V ++ L+DG C+   ++ A+E+  +M  +    
Sbjct: 215 GLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 EKGDVWTGLKLLKEMQRDGYMPSV 416



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 113/226 (50%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +QS     S + N  C+ S++     +  ++++     G V + V    +I   C K 
Sbjct: 200 SGVQSDVYTYSVLINGLCKASKMDDANELFDEMLD----NGLVPNGVTFTTLIDGHC-KN 254

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R  + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 255 RRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +   L +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCEKGDVWTGLKLLKEMQRDGYMPSVVT 418



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 2/222 (0%)

Query: 119 AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
           A +  G    V    V+ N   KA   ++A  +  +M +  L P+ + +  +I   C+  
Sbjct: 196 AMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNR 255

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
            +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y+
Sbjct: 256 RVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYT 315

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            L+DG C+ G +E A E    M KE  +   + V YT++I   C +G   +A  +L  M 
Sbjct: 316 TLIDGNCKEGDLETAFEYRKRMIKE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREML 373

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           ++G  P   T + +I  FC +G++    +L+ ++   G + S
Sbjct: 374 SVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKEMQRDGYMPS 415


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 143/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ L+P  + +N ++  + + G +     L   M      PD+ TY  +I 
Sbjct: 155 AQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   ++++A  LF  M   G   N V ++ L+DG C+ G ++ A+E+  ++  +G   
Sbjct: 215 GLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQG--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I  FC KG +K+   ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              K++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    ++++ E C
Sbjct: 333 YRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G + SV
Sbjct: 393 KNGDVNTGSKLLKEMQRDGHVPSV 416



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 8/216 (3%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVL 152
           S + N  C+ S++ +   +  +++E    +G V + V    +I   C+  +L + AM + 
Sbjct: 210 SVLINGLCKESKMDEAHELFDEMLE----KGLVPNGVTFTTLIDGHCKNGKL-DLAMEIY 264

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           +++    L PD I YN +I  FC+KGD+    +L+  M +  L PD ITY ++I G C  
Sbjct: 265 KQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKE 324

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G LE A    K M       + V Y+AL+ G+C+ G    A ++L EM   G    P+  
Sbjct: 325 GDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVG--LKPDSG 382

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           TYT V+  FC  G +     +L  M+  G  P+ VT
Sbjct: 383 TYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSVVT 418



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 112/231 (48%), Gaps = 8/231 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   F++ + H           +LD + +L    +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               KE  +C    ++  +  ++  FC +G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 121 WGFYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G LDE ++L + + A G+      YS L+  L +  ++ EA +LF +ML  G+ P+
Sbjct: 181 YIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           G+  + +I   C  G++     +Y+ I   G   S D   ++ L+ G C+K
Sbjct: 241 GVTFTTLIDGHCKNGKLDLAMEIYKQILSQGL--SPDLITYNTLIYGFCKK 289


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 148/287 (51%), Gaps = 2/287 (0%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC+ +      + +    A +  EAM V   M      PDT +Y  ++   CE G    A
Sbjct: 137 GCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEA 196

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           + L++        P+I+ Y ++I G+CNAG +E A  +F+ M  + C+ N+  Y+ L+ G
Sbjct: 197 EVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHG 256

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +C+ G +ERA+ L   M + G    PNVVTYT++IQ  C +G ++ A  +L  ME  G  
Sbjct: 257 LCKSGKVERAMVLFSRMVEAG--LEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLV 314

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN  T S LI   C    ++EA   +  +V  G   +   Y+SL+  L +T ++  A++L
Sbjct: 315 PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADEL 374

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             KM++ G  PD  + S +I  LC   ++ +   + ED+ + G  +S
Sbjct: 375 MQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 135/248 (54%), Gaps = 4/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD   Y +M+ G C AGR E+A  L +    +G   N+V Y+AL+DG C  G ME AL++
Sbjct: 175 PDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKV 234

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
              M+  G  CSPNV TYT +I   C  G ++ A+ +  RM   G  PN VT + LI+G 
Sbjct: 235 FEGMD--GNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQ 292

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C EG+L  A++L+  +   G V +   +S L+  L + ++++EA+     ++  GVK + 
Sbjct: 293 CNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNE 352

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I  LC  G++     L + +   GF+   D+  +S L+ GLCR+    +A  + 
Sbjct: 353 VVYTSLIDGLCKTGKIDAADELMQKMISEGFVP--DAHSYSSLIDGLCRQKKLSQATLML 410

Query: 437 RFMLKKRI 444
             M++K I
Sbjct: 411 EDMMEKGI 418



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 150/309 (48%), Gaps = 8/309 (2%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +MP  +LR     Y  +I  +C  GD+ AA + +  +    L PD   Y S + G+C AG
Sbjct: 66  RMPARNLR----TYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAG 121

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            L  AC +F +M   GC      Y+ALL G+   G +  A+ +   M  +   C+P+   
Sbjct: 122 MLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRAD--SCAPDTHV 179

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y +++   C  G  +EA  +L+   + G  PN V  + LI G+C  G ++ A ++ + + 
Sbjct: 180 YATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMD 239

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
                 +   Y+ L+  L ++ +++ A  LFS+M+ +G++P+ +  + +I+  C  G + 
Sbjct: 240 GNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQ 299

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
             F L   +E  G +   +    SVL+  LC++    EA      ++KK + +       
Sbjct: 300 CAFRLLHLMETNGLVP--NDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTS 357

Query: 454 IVEHLKKSG 462
           +++ L K+G
Sbjct: 358 LIDGLCKTG 366



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 160/327 (48%), Gaps = 9/327 (2%)

Query: 114 IDVVEAYKEEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V E      C  +V+   ++I  LC+  ++   AM +  +M E  L P+ + Y  +I+
Sbjct: 232 LKVFEGMDGNRCSPNVRTYTELIHGLCKSGKV-ERAMVLFSRMVEAGLEPNVVTYTALIQ 290

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C +G +  A  L+  M    L P+  T+  +I   C   ++E+A      + + G   
Sbjct: 291 GQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKV 350

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N V Y++L+DG+C+ G ++ A EL+ +M  EG    P+  +Y+S+I   C +  + +A  
Sbjct: 351 NEVVYTSLIDGLCKTGKIDAADELMQKMISEG--FVPDAHSYSSLIDGLCRQKKLSQATL 408

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L+ M   G   + VT + +I     E   +   ++ DK++A G       Y+  V    
Sbjct: 409 MLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYC 468

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              R+++AE +  +M+  GV P+ +  + +IR     G V + F  +E +   G+  + D
Sbjct: 469 EEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNED 528

Query: 413 SDIHSVLLLGLCRK---NHSVEAAKLA 436
           S  ++VLL  + +K   ++SV+  K+A
Sbjct: 529 S--YTVLLRLVVKKSSSDNSVDIWKIA 553



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 87/167 (52%), Gaps = 4/167 (2%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +  KM    + PD + Y   +R +CE+G M  A+ ++  M    ++P+++TY ++I+G+ 
Sbjct: 444 IFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYA 503

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL--LGEMEKEGGDCS 268
           N G +  A   F+VM   G   N  +Y+ LL  + +  S + ++++  + +M K+  + +
Sbjct: 504 NLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADM-KDLQESN 562

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
            + + +  +I     KG + E   +L  M+  G  P+  TI+ +I G
Sbjct: 563 YDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSN-TINAMITG 608


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 174/383 (45%), Gaps = 37/383 (9%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V+E     GC + V    ++ N +C++  + +EA+ +LR +P F   PD + YN V++
Sbjct: 214 VRVLEDLHARGCALDVGNCNLVLNAICDQGSV-DEALHLLRDLPSFGCEPDVVSYNAVLK 272

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C         ELM+ M  +   P+I+T+ ++I   C  G  E    +   M  HGC  
Sbjct: 273 GLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTP 332

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG---------------------------- 264
           ++  Y+ ++DGIC+ G +E A E+L  M   G                            
Sbjct: 333 DIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELL 392

Query: 265 -----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
                 DC  + VT+  ++  FC  G++   + +L++M   GC P+ +T +T+I GFC E
Sbjct: 393 AEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKE 452

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +DEA  L+  + A G   +   Y+ ++  L   +R  +AE L S+M+  G   + +  
Sbjct: 453 GLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITF 512

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + +I  LC  G V +   L + +   G   S D   +S ++ GL +   + EA +L   M
Sbjct: 513 NTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTDEALELLNVM 570

Query: 440 LKKRIWLQGPYVDKIVEHLKKSG 462
           + K +         I   L + G
Sbjct: 571 VNKGMSPNTIIYSSIASALSREG 593



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 168/327 (51%), Gaps = 6/327 (1%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +V+    E GC   ++M   I + +C++  L   A  +L +MP + L+P+ + YN +++ 
Sbjct: 320 EVLAQMVEHGCTPDIRMYATIIDGICKEGHL-EVAHEILNRMPSYGLKPNVVCYNTLLKG 378

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C        +EL+  M   D   D +T+  ++  FC  G ++    L + M  HGC  +
Sbjct: 379 LCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPD 438

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           ++ Y+ +++G C+ G ++ A+ LL  M   G  C PN ++YT V++  C      +A  +
Sbjct: 439 VITYTTVINGFCKEGLIDEAVMLLKSMTACG--CKPNTISYTIVLKGLCSAERWVDAEDL 496

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           + +M   GC  N +T +TLI   C +G +++A +L+ +++  G       YS+++  L +
Sbjct: 497 MSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 556

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             +  EA +L + M+  G+ P+ +  S +   L   G++ +   ++++I+     S  D+
Sbjct: 557 AGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRS--DA 614

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFML 440
            +++ ++  LC++  +  A +   +M+
Sbjct: 615 VLYNAVISSLCKRGETERAIEFLAYMV 641



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 138/267 (51%), Gaps = 8/267 (2%)

Query: 134 VIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V FN+     C+   L +  + +L +M E    PD I Y  VI  FC++G +  A  L+K
Sbjct: 405 VTFNILVDFFCQNG-LVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 463

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P+ I+Y  ++KG C+A R  DA  L   M + GC  N + ++ L++ +C+ G
Sbjct: 464 SMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 523

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E+A+ELL +M   G  CSP++++Y++VI      G   EAL +L+ M   G +PN + 
Sbjct: 524 LVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTII 581

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S++      EG +++  Q+ D +      S    Y++++  L +    + A +  + M+
Sbjct: 582 YSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMV 641

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEG 395
           +SG  P+    +++IR L   G V E 
Sbjct: 642 SSGCVPNESTYTILIRGLASEGFVKEA 668



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 4/347 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++     GC     M  VI     +      A+ VL  +       D    N V+   C
Sbjct: 181 VLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAIC 240

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G +  A  L++ +      PD+++Y +++KG C A R      L + M R  C  N+V
Sbjct: 241 DQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV 300

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L+  +CR G  ER  E+L +M + G  C+P++  Y ++I   C +G ++ A  IL+
Sbjct: 301 TFNTLISYLCRNGLFERVHEVLAQMVEHG--CTPDIRMYATIIDGICKEGHLEVAHEILN 358

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           RM + G  PN V  +TL+KG C     +E  +L+ ++           ++ LV    +  
Sbjct: 359 RMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNG 418

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            +    +L  +ML  G  PD +  + +I   C  G + E   L + +   G   +  S  
Sbjct: 419 LVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTIS-- 476

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           ++++L GLC     V+A  L   M+++   L     + ++  L K G
Sbjct: 477 YTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 523



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 155/307 (50%), Gaps = 5/307 (1%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
            V+  LC + R+A +A+ VL +MP     P   +Y+ ++   C  G   +A  +++ +  
Sbjct: 164 PVVRALCARGRIA-DALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHA 222

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
                D+     ++   C+ G +++A  L + +   GC  ++V+Y+A+L G+C       
Sbjct: 223 RGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGC 282

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
             EL+ EM +    C PN+VT+ ++I   C  G+ +    +L +M   GC P+    +T+
Sbjct: 283 VQELMEEMVRMA--CPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATI 340

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G C EG+L+ A+++++++ + G   +  CY++L+  L   +R +E E+L ++M     
Sbjct: 341 IDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDC 400

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
             D +  ++++   C  G V     L E + + G +  V +  ++ ++ G C++    EA
Sbjct: 401 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVIT--YTTVINGFCKEGLIDEA 458

Query: 433 AKLARFM 439
             L + M
Sbjct: 459 VMLLKSM 465



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 132/259 (50%), Gaps = 2/259 (0%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +I+++E   E GC+  V     + N   K  L +EA+ +L+ M     +P+TI Y  V++
Sbjct: 423 VIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLK 482

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C     + A++LM  M       + IT+ ++I   C  G +E A  L K M  +GC+ 
Sbjct: 483 GLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 542

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L++YS ++DG+ + G  + ALELL  M  +G   SPN + Y+S+      +G + + + 
Sbjct: 543 DLISYSTVIDGLGKAGKTDEALELLNVMVNKG--MSPNTIIYSSIASALSREGRINKVIQ 600

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D ++      + V  + +I   C  G  + A + +  +V+ G V +   Y+ L+  L 
Sbjct: 601 MFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLA 660

Query: 353 RTKRLKEAEKLFSKMLASG 371
               +KEA+++ +++ + G
Sbjct: 661 SEGFVKEAQEMLTELCSKG 679



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 136/307 (44%), Gaps = 20/307 (6%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN ++  +C  G + +A  L      + + P+  TY  +++  C  GR+ DA  +   M 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAA---VPVPPNAYTYFPVVRALCARGRIADALAVLDEMP 186

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           R GCA     Y  +L+  CR G    A+ +L ++   G  C+ +V     V+   C +G 
Sbjct: 187 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG--CALDVGNCNLVLNAICDQGS 244

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + EAL +L  + + GC P+ V+ + ++KG C+        +L++++V      +   +++
Sbjct: 245 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 304

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+  L R    +   ++ ++M+  G  PD    + +I  +C  G +     +   +   G
Sbjct: 305 LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 364

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL-------------QGPYVDK 453
              +V    ++ LL GLC      E  +L   M  K   L             Q   VD+
Sbjct: 365 LKPNVVC--YNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDR 422

Query: 454 IVEHLKK 460
           ++E L++
Sbjct: 423 VIELLEQ 429



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 122/277 (44%), Gaps = 18/277 (6%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S+I+  C AGR  +A             A +VAY+A++ G CR G +E A  L   +   
Sbjct: 100 SLIRSLCAAGRTAEAARALSAAGG---GAGVVAYNAMVAGYCRAGQLESARRLAAAVP-- 154

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
                PN  TY  V++  C +G + +AL +LD M   GCAP       +++  C  G   
Sbjct: 155 ---VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFR 211

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A ++++ + A G     G  + ++  +     + EA  L   + + G +PD ++ + ++
Sbjct: 212 SAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVL 271

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI-HSVLLLGLCRKN-----HSVEAAKLAR 437
           + LC+  +     C+ E +E++  ++   + +  + L+  LCR       H V  A++  
Sbjct: 272 KGLCMAKR---WGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEV-LAQMVE 327

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
                 I +    +D I +        E++  +P  G
Sbjct: 328 HGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 364



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 67/152 (44%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I++++     GC   +     + +   KA   +EA+ +L  M    + P+TIIY+++   
Sbjct: 529 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASA 588

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
              +G +    ++   +    +  D + Y ++I   C  G  E A      M   GC  N
Sbjct: 589 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 648

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGG 265
              Y+ L+ G+   G ++ A E+L E+  +G 
Sbjct: 649 ESTYTILIRGLASEGFVKEAQEMLTELCSKGA 680


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 141/264 (53%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 159 AQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLIN 218

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 219 GLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 276

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G   +++T +TLI G C EG+LD A++
Sbjct: 277 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFE 336

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 337 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFC 396

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +D+++ G   SV
Sbjct: 397 KKGDVWKGSKLLKDMQRNGHAPSV 420



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 107/238 (44%), Gaps = 4/238 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L   +      
Sbjct: 69  DIYVFSGLITTYLESGFLRDAIECYRLTREHKLRVPFDTCKKVLEHLMKLKYFKLVWGFX 128

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             +   G         +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 129 XXIXXXGX--XXXXXFFNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYI 186

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+L+E ++L   ++A G       YS L+  L +  ++ +A +LF +ML  G+ P+G+
Sbjct: 187 RLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGV 246

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 247 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP--DLITYNTLIYGLCKKGDLKQAHDL 302



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            V    +I  LC++ R + +A  +LR+M    L+PDT  Y  +I  FC+KGD+    +L+
Sbjct: 350 DVAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLL 408

Query: 188 KGMGLIDLYPDIITYVSMIKG 208
           K M      P ++TY  ++ G
Sbjct: 409 KDMQRNGHAPSVVTYNVLMNG 429


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 159/296 (53%), Gaps = 10/296 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID---LYPDIITYVS 204
           A  V  ++P+  LRP  + +N +I   C+ G   A +E  +  G+++   + PD+ T+ +
Sbjct: 161 ARLVFDEIPKRGLRPTVVSFNTLISGCCKAG---AVEEGFRLKGVMESERVCPDVFTFSA 217

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C  GRL++   LF  M   G   N V ++ L+DG C+ G ++ AL+    M  +G
Sbjct: 218 LINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQG 277

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               P++VTY ++I   C  G +KEA  +++ M A G  P+R+T +TLI G C  G+++ 
Sbjct: 278 --VRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMES 335

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A ++  ++V  G       ++ L+  L R  R+ +AE++   ML++G KPD    ++++ 
Sbjct: 336 ALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVD 395

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
             C  G V  GF L ++++  G +  V +  ++ L+ GLC++     A  L   ML
Sbjct: 396 CFCKKGNVXMGFKLLKEMQSDGHVPGVVT--YNALMNGLCKQGQVKNAKMLLDAML 449



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 129/267 (48%), Gaps = 4/267 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+   +  ++ GFC  G +  A  +F  + + G    +V+++ L+ G C+ G++E    L
Sbjct: 140 PNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRL 199

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
            G ME E     P+V T++++I   C +G + E   + D M   G  PN VT + LI G 
Sbjct: 200 KGVMESE--RVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQ 257

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G +D A +    ++A G       Y++L+  L +   LKEA +L ++M ASG++PD 
Sbjct: 258 CKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDR 317

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I   C  G +     +   + + G    +D    +VL+ GLCR     +A ++ 
Sbjct: 318 ITFTTLIDGCCKYGDMESALEIKRRMVEEGI--ELDDVAFTVLISGLCRDGRVHDAERML 375

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           R ML        P    +V+   K G+
Sbjct: 376 RDMLSAGFKPDDPTYTMVVDCFCKKGN 402



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 122 EEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           EEG  +  V    +I  LC   R+ ++A  +LR M     +PD   Y  V+  FC+KG++
Sbjct: 345 EEGIELDDVAFTVLISGLCRDGRV-HDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNV 403

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
               +L+K M      P ++TY +++ G C  G++++A  L   M   G A N + Y+ L
Sbjct: 404 XMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNIL 463

Query: 241 LDGICRLGS 249
           L+G  + GS
Sbjct: 464 LEGHSKHGS 472



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 2/163 (1%)

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN    + L+ GFC  G +  A  + D++   G   +   +++L+    +   ++E 
Sbjct: 137 GYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEG 196

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +L   M +  V PD    S +I  LC  G++ EG  L++++   G +   +    +VL+
Sbjct: 197 FRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVP--NGVTFTVLI 254

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            G C+      A K  + ML + +       + ++  L K GD
Sbjct: 255 DGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGD 297


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 148/287 (51%), Gaps = 2/287 (0%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC+ +      + +    A +  EAM V   M      PDT +Y  ++   CE G    A
Sbjct: 137 GCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEA 196

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           + L++        P+I+ Y ++I G+CNAG +E A  +F+ M  + C+ N+  Y+ L+ G
Sbjct: 197 EVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHG 256

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +C+ G +ERA+ L   M + G    PNVVTYT++IQ  C +G ++ A  +L  ME  G  
Sbjct: 257 LCKSGKVERAMVLFSRMVEAG--LEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLV 314

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN  T S LI   C    ++EA   +  +V  G   +   Y+SL+  L +T ++  A++L
Sbjct: 315 PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADEL 374

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             KM++ G  PD  + S +I  LC   ++ +   + ED+ + G  +S
Sbjct: 375 MQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 148/283 (52%), Gaps = 10/283 (3%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD   Y +M+ G C AGR E+A  L +    +G   N+V Y+AL+DG C  G ME AL++
Sbjct: 175 PDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKV 234

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
              M+  G  CSPNV TYT +I   C  G ++ A+ +  RM   G  PN VT + LI+G 
Sbjct: 235 FEGMD--GNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQ 292

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C EG+L  A++L+  +   G V +   +S L+  L + ++++EA+     ++  GVK + 
Sbjct: 293 CNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNE 352

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I  LC  G++     L + +   GF+   D+  +S L+ GLCR+    +A  + 
Sbjct: 353 VVYTSLIDGLCKTGKIDAADELMQKMISEGFVP--DAHSYSSLIDGLCRQKKLSQATLML 410

Query: 437 RFMLKKRIWLQGPY-----VDKIVEHLKKSGDEELITNLPKIG 474
             M++K I    P      +D++V  +   G +++   +   G
Sbjct: 411 EDMMEKGIQ-ASPVTYTIIIDELVREVGSEGPKKIFDKMIATG 452



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 150/309 (48%), Gaps = 8/309 (2%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +MP  +LR     Y  +I  +C  GD+ AA + +  +    L PD   Y S + G+C AG
Sbjct: 66  RMPARNLR----TYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAG 121

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            L  AC +F +M   GC      Y+ALL G+   G +  A+ +   M  +   C+P+   
Sbjct: 122 MLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADS--CAPDTHV 179

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y +++   C  G  +EA  +L+   + G  PN V  + LI G+C  G ++ A ++ + + 
Sbjct: 180 YATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMD 239

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
                 +   Y+ L+  L ++ +++ A  LFS+M+ +G++P+ +  + +I+  C  G + 
Sbjct: 240 GNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQ 299

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
             F L   +E  G +   +    SVL+  LC++    EA      ++KK + +       
Sbjct: 300 CAFRLLHLMETNGLVP--NDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTS 357

Query: 454 IVEHLKKSG 462
           +++ L K+G
Sbjct: 358 LIDGLCKTG 366



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 160/327 (48%), Gaps = 9/327 (2%)

Query: 114 IDVVEAYKEEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V E      C  +V+   ++I  LC+  ++   AM +  +M E  L P+ + Y  +I+
Sbjct: 232 LKVFEGMDGNRCSPNVRTYTELIHGLCKSGKV-ERAMVLFSRMVEAGLEPNVVTYTALIQ 290

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C +G +  A  L+  M    L P+  T+  +I   C   ++E+A      + + G   
Sbjct: 291 GQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKV 350

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N V Y++L+DG+C+ G ++ A EL+ +M  EG    P+  +Y+S+I   C +  + +A  
Sbjct: 351 NEVVYTSLIDGLCKTGKIDAADELMQKMISEG--FVPDAHSYSSLIDGLCRQKKLSQATL 408

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L+ M   G   + VT + +I     E   +   ++ DK++A G       Y+  V    
Sbjct: 409 MLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYC 468

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              R+++AE +  +M+  GV P+ +  + +IR     G V + F  +E +   G+  + D
Sbjct: 469 EEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNED 528

Query: 413 SDIHSVLLLGLCRK---NHSVEAAKLA 436
           S  ++VLL  + +K   ++SV+  K+A
Sbjct: 529 S--YTVLLRLVVKKSSSDNSVDIWKIA 553



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 117/289 (40%), Gaps = 45/289 (15%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +  KM    + PD + Y   +R +CE+G M  A+ ++  M    ++P+++TY ++I+G+ 
Sbjct: 444 IFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYA 503

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS--------------------- 249
           N G +  A   F+VM   G   N  +Y+ LL  + +  S                     
Sbjct: 504 NLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLE 563

Query: 250 --MERALELLGE----------------------MEKEGGDCSPNVVTYTSVIQIFCGKG 285
              ER L L  +                      M  +  + +P+   YTS+I   C   
Sbjct: 564 DITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLK 623

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
           ++ +AL +LD M   G  P+  +   +I   C  GN   A ++   ++   S      + 
Sbjct: 624 ILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWK 683

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            L+  L++   + E   L S M   G +P     +++  E+ +  +V E
Sbjct: 684 ILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAMITGEITVTNEVQE 732


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 170/359 (47%), Gaps = 41/359 (11%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +  C  SV    ++ + LC+ AR++ +A  +L  M E    P+ + YN +I  FC+ G+M
Sbjct: 95  QRHCAPSVITYTILVDALCKSARIS-DASLILEDMIEAGCAPNVVTYNTLINGFCKLGNM 153

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L   M      PD+ TY  +I G+C   R +D   L + M ++GC  N + Y+ L
Sbjct: 154 DEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTL 213

Query: 241 LDGI-----------------------------------CRLGSMERALELLGEMEKEGG 265
           +D +                                   C++G ++ A EL   M   G 
Sbjct: 214 MDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRG- 272

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C P++ TY  +I   C    + +A  +L+RM   GC P+ VT ++++ G C    +DEA
Sbjct: 273 -CLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEA 331

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           Y++ + +  GG        S+L+  L +++RL +AEKL  +M  +G  PD +A +++I  
Sbjct: 332 YEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHG 391

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            C   Q+ +    + ++   G + +V +  +S+++  LC+     +   L + ML++ +
Sbjct: 392 FCKADQLDKSLAFFSEMLDKGCVPTVIT--YSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 159/347 (45%), Gaps = 41/347 (11%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           S+    +I   C KAR   +A  +L +M +  + P   +YN +I+  C+ G + +A    
Sbjct: 33  SITYSTLINGFC-KARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHY 91

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M      P +ITY  ++   C + R+ DA  + + M   GCA N+V Y+ L++G C+L
Sbjct: 92  RDMQR-HCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKL 150

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G+M+ A+ L  +M +    CSP+V TY  +I  +C +   ++   +L  M   GC PN +
Sbjct: 151 GNMDEAVVLFNQMLENS--CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFI 208

Query: 308 TISTL-----------------------------------IKGFCVEGNLDEAYQLIDKV 332
           T +TL                                   I  FC  G LD AY+L   +
Sbjct: 209 TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLM 268

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
              G +     Y+ ++    R  R+ +A +L  +M  +G  PD +  + ++  LC   QV
Sbjct: 269 TDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQV 328

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            E + +YE +   G+   +D    S L+ GLC+     +A KL R M
Sbjct: 329 DEAYEVYEVLRNGGYF--LDVVTCSTLIDGLCKSRRLDDAEKLLREM 373



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 149/278 (53%), Gaps = 5/278 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD+I Y+ +I  FC+  D   A  L+  M    + P    Y ++IKG C+ GR++ A   
Sbjct: 31  PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 90

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           ++ M+RH CA +++ Y+ L+D +C+   +  A  +L +M + G  C+PNVVTY ++I  F
Sbjct: 91  YRDMQRH-CAPSVITYTILVDALCKSARISDASLILEDMIEAG--CAPNVVTYNTLINGF 147

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G M EA+ + ++M    C+P+  T + LI G+C +    +  +L+ ++V  G   + 
Sbjct: 148 CKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNF 207

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++L+  LV++ +  +A  L   ML    KP     ++MI   C  GQ+   + L++ 
Sbjct: 208 ITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQL 267

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +   G L  + +  +++++ G CR N   +A +L   M
Sbjct: 268 MTDRGCLPDIYT--YNIMISGACRANRIDDARQLLERM 303



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 143/291 (49%), Gaps = 10/291 (3%)

Query: 86  LQSSYRHSSFMYN----RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141
           L++S     F YN      C+  R +    ++ ++V+   E   +    +M  +    + 
Sbjct: 164 LENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKY 223

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
               N A  +LR+    D +P    +N +I +FC+ G +  A EL + M      PDI T
Sbjct: 224 IDAFNLAQMMLRR----DCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYT 279

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  MI G C A R++DA  L + M   GC  ++V Y++++ G+C+   ++ A E+  E+ 
Sbjct: 280 YNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVY-EVL 338

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           + GG    +VVT +++I   C    + +A  +L  ME  G AP+ V  + LI GFC    
Sbjct: 339 RNGG-YFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQ 397

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           LD++     +++  G V +   YS ++ +L ++ R+++   L   ML  GV
Sbjct: 398 LDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 32/226 (14%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           ++  F    + ++A  LFK      C+ + + YS L++G C+    ++A  LL EMEK G
Sbjct: 4   LLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 63

Query: 265 --------------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALG 292
                                             C+P+V+TYT ++   C    + +A  
Sbjct: 64  IVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASL 123

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           IL+ M   GCAPN VT +TLI GFC  GN+DEA  L ++++          Y+ L+    
Sbjct: 124 ILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYC 183

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
           + +R ++  KL  +M+  G +P+ +  + ++  L   G+ ++ F L
Sbjct: 184 KQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNL 229



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 9/201 (4%)

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           G CSP+ +TY+++I  FC     ++A  +LD ME  G  P+    +T+IKG C  G +D 
Sbjct: 27  GLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDS 86

Query: 325 A---YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           A   Y+ + +  A   ++    Y+ LV  L ++ R+ +A  +   M+ +G  P+ +  + 
Sbjct: 87  ALVHYRDMQRHCAPSVIT----YTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNT 142

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +I   C  G + E   L+  + +     S D   +++L+ G C++    + AKL + M+K
Sbjct: 143 LINGFCKLGNMDEAVVLFNQMLENS--CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVK 200

Query: 442 KRIWLQGPYVDKIVEHLKKSG 462
                     + +++ L KSG
Sbjct: 201 YGCEPNFITYNTLMDSLVKSG 221


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 155/311 (49%), Gaps = 6/311 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC K+R   EA   L +M E  L+P+   Y  +I  +C+ G+M  AD   K M   
Sbjct: 522 VIIGLC-KSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGC 580

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ +   ++I G+C  G   +A  +F+ M       ++  YSAL+ G+ R G ++ A
Sbjct: 581 GIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGA 640

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +ELL E  ++G    P+V TY S+I  FC +G + +A  + + M   G +PN +T + LI
Sbjct: 641 MELLSEFLEKG--LVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALI 698

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G ++ A +L D +   G   +   Y++++    ++  L +A +LF +M   GV 
Sbjct: 699 NGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVP 758

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD    S +I      G   +   L+ +  + GF S+   +    L+ G C+    +EA 
Sbjct: 759 PDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLN---ALMDGFCKSGKVIEAN 815

Query: 434 KLARFMLKKRI 444
           +L   M+ K +
Sbjct: 816 QLLEDMVDKHV 826



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 159/335 (47%), Gaps = 9/335 (2%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
             EA  + R M    + PD   Y+ +I      G +  A EL+       L PD+ TY S
Sbjct: 602 TTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNS 661

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I GFC  G +  A  L + M + G + N++ Y+AL++G+C+ G +ERA EL   +  +G
Sbjct: 662 IISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKG 721

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
              + N VTY ++I  +C  G + +A  + D M   G  P+    S LI G   EGN ++
Sbjct: 722 --LAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEK 779

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  L  + V  G  S+    ++L+    ++ ++ EA +L   M+   VKPD +  +++I 
Sbjct: 780 ALSLFLESVQKGFASTSS-LNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILID 838

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             C  G + E    + D++K   + +  +  ++ LL G        E   L   M+ K I
Sbjct: 839 YHCKTGFLKEAEQFFVDMQKRNLMPNALT--YTALLSGYNMAGRRSEMFALFDEMIAKDI 896

Query: 445 WLQGPYVDKIVEHLKKSGDE----ELITNLPKIGG 475
              G     +++   K GD     +L+ ++ K GG
Sbjct: 897 EPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGG 931



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 167/370 (45%), Gaps = 6/370 (1%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKM 155
           YN   E    +QN S + D++   K+   V +     +I N LC    +  +A  V   M
Sbjct: 414 YNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSI-EDASRVFEIM 472

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               ++P+ +IY  +I+   ++G    A  ++K M    + PD++ Y S+I G C + ++
Sbjct: 473 VSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKM 532

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           E+A      M   G   N+  Y AL+ G C+ G M+ A     EM   G   +PN V  T
Sbjct: 533 EEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEM--LGCGIAPNDVVCT 590

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           ++I  +C +G   EA  I   M      P+  T S LI G    G L  A +L+ + +  
Sbjct: 591 ALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEK 650

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G V     Y+S++    +   + +A +L   M   G+ P+ +  + +I  LC  G++   
Sbjct: 651 GLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERA 710

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
             L++ I   G   + ++  ++ ++ G C+  +  +A +L   M  K +         ++
Sbjct: 711 RELFDGIPGKGL--AHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALI 768

Query: 456 EHLKKSGDEE 465
           +  +K G+ E
Sbjct: 769 DGCRKEGNTE 778



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 156/323 (48%), Gaps = 4/323 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           ++G V  V    ++ +   K +   EA  +L +M    L+P  + Y  +I  F  +GD  
Sbjct: 299 KKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSG 358

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  + + M    +  ++ TY +++KG C  G +E A  L   M   G   +   Y+ ++
Sbjct: 359 EAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMI 418

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G  +  +  R  +LL EM+K   +  P   T   +I   C  G +++A  + + M +LG
Sbjct: 419 EGYLKEQNTSRVKDLLSEMKKS--NLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLG 476

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN V  +TLIKG   EG   EA +++  +   G      CY+S+++ L ++++++EA+
Sbjct: 477 VKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAK 536

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
               +M+  G+KP+      +I   C  G++      ++++   G   + +  + + L+ 
Sbjct: 537 DYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGI--APNDVVCTALID 594

Query: 422 GLCRKNHSVEAAKLARFMLKKRI 444
           G C++  + EA  + R ML + +
Sbjct: 595 GYCKEGSTTEATSIFRCMLGRSV 617



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 142/327 (43%), Gaps = 34/327 (10%)

Query: 114 IDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           ++++  + E+G V  V     +I   C++  +  +A  +   M +  + P+ I YN +I 
Sbjct: 641 MELLSEFLEKGLVPDVFTYNSIISGFCKQGGIG-KAFQLHEYMCQKGISPNIITYNALIN 699

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C+ G++  A EL  G+    L  + +TY ++I G+C +G L  A  LF  M   G   
Sbjct: 700 GLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPP 759

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG------------GDCS------------ 268
           +   YSAL+DG  + G+ E+AL L  E  ++G            G C             
Sbjct: 760 DSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLE 819

Query: 269 --------PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
                   P+ VTYT +I   C  G +KEA      M+     PN +T + L+ G+ + G
Sbjct: 820 DMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAG 879

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
              E + L D+++A      G  +S ++   ++     +  KL   ML  G       C 
Sbjct: 880 RRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCH 939

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGF 407
           V+I  LC    V E   + E IE+ G 
Sbjct: 940 VLIDPLCRKEHVSEVLKVLEKIEEQGL 966



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 142/299 (47%), Gaps = 5/299 (1%)

Query: 147 EAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           E  W     M E ++  D   Y ++I      G+      L+  M      P ++TY  +
Sbjct: 218 ELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVV 277

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C AG +++A  L K+M + G  A++  YS L+DG  +      A  +L EM  +G 
Sbjct: 278 IGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKG- 336

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P  V YT++I  F  +G   EA  + + M A G   N  T + L+KG C  G++++A
Sbjct: 337 -LKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKA 395

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L+++++  G       Y++++   ++ +     + L S+M  S + P    C ++I  
Sbjct: 396 DALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIING 455

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           LC  G + +   ++E +  +G     ++ I++ L+ G  ++    EA ++ + M KK +
Sbjct: 456 LCRHGSIEDASRVFEIMVSLGV--KPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGV 512



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 118/241 (48%), Gaps = 3/241 (1%)

Query: 93  SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVL 152
            SF+Y+   +  R + N    + +     ++G   +  +  ++   C+  ++  EA  +L
Sbjct: 760 DSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVI-EANQLL 818

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
             M +  ++PD + Y  +I   C+ G +  A++    M   +L P+ +TY +++ G+  A
Sbjct: 819 EDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMA 878

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           GR  +   LF  M       + V +S ++D   + G   + L+L+ +M K+GG+ S NV 
Sbjct: 879 GRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVC 938

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
               +I   C K  + E L +L+++E  G   +  T STL++ F   G +D A +++  +
Sbjct: 939 HV--LIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSM 996

Query: 333 V 333
           V
Sbjct: 997 V 997



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 39/286 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KA     A  +   +P   L  + + Y  +I  +C+ G++  A  L   M L 
Sbjct: 697 LINGLC-KAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLK 755

Query: 194 DLYPDIITYVSMIKG----------------------------------FCNAGRLEDAC 219
            + PD   Y ++I G                                  FC +G++ +A 
Sbjct: 756 GVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEAN 815

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L + M       + V Y+ L+D  C+ G ++ A +   +M+K   +  PN +TYT+++ 
Sbjct: 816 QLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKR--NLMPNALTYTALLS 873

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV-AGGSV 338
            +   G   E   + D M A    P+ VT S +I     EG+  +  +L+D ++  GG+V
Sbjct: 874 GYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNV 933

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           S   C+  L+  L R + + E  K+  K+   G+      CS ++R
Sbjct: 934 SKNVCH-VLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVR 978



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 4/226 (1%)

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           + +  +I G+   G  ++A   F   KR+G    L+  + LL  + +   +E        
Sbjct: 167 VVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNG 226

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M +   +   +V TYT +I      G  KE   +L  ME  GC+P+ VT + +I G C  
Sbjct: 227 MLE--ANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRA 284

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +DEA++L   +   G V+    YS L+    + KR  EA+ +  +M + G+KP  +A 
Sbjct: 285 GEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAY 344

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           + +I      G   E F + E++   G    ++   ++ L+ G+C+
Sbjct: 345 TALIDGFMRQGDSGEAFRVKEEMLARGV--KLNLFTYNALVKGVCK 388


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 155/280 (55%), Gaps = 20/280 (7%)

Query: 129 VKMMKVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           VK   V +N     LC+  RL  EA  +L +M      PD + Y++ +   C+ G ++ A
Sbjct: 183 VKADVVTYNTLMDGLCKAGRL-QEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDA 241

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM-KRHGCAANLVAYSALLD 242
            ++++ M      P+++TY +++ G C +G+++ A  + + M    GC  N+V YS ++D
Sbjct: 242 HQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVD 301

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C+LG  + A  ++  M + G  C P+VVTY+S++   C  G ++EA+  +  M   GC
Sbjct: 302 GLCKLGRTQEARSVMEAMARAG--CRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGC 359

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--------SVSSGGCYSSLVVELVRT 354
            PN VT  +L+ G C  G L EA ++++++ +GG        SVS+   Y++L+  L + 
Sbjct: 360 KPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVST---YNALIGGLCKA 416

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            R+ +A K F +M + G  PDG++ S ++  L   G+ L+
Sbjct: 417 GRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQ 456



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 211/441 (47%), Gaps = 29/441 (6%)

Query: 40  QKNPNNIEKTLATVKAK------------LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQ 87
           Q  P + E+ L T+ A+            L+  C +E  H     +++  +R  I    +
Sbjct: 23  QGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWH-----EAEELVRDMISRGGR 77

Query: 88  SSYRHSSF--MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           S+    ++  + +  C+  +++++  ++ +V+          ++   KV+ +LC+ ARL 
Sbjct: 78  STPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPD---ALMYTKVVASLCKSARLG 134

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
                +  +M      P  I +N +I   C + ++  AD L++ M    +  D++TY ++
Sbjct: 135 EALELLE-EMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTL 193

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + G C AGRL++A  L + MK  GCA ++VAYS+ + G+C+ G +  A ++L +M     
Sbjct: 194 MDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHH 253

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-GCAPNRVTISTLIKGFCVEGNLDE 324
           D  PNVVTY +++   C  G +  AL ++++M +  GC  N V  ST++ G C  G   E
Sbjct: 254 D--PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQE 311

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  +++ +   G       YSSLV  L +  +++EA +   +M   G KP+ +    ++ 
Sbjct: 312 ARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVH 371

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSV---DSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            LC  G++ E   + E++   G            ++ L+ GLC+     +A K  + M  
Sbjct: 372 GLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRS 431

Query: 442 KRIWLQGPYVDKIVEHLKKSG 462
           +     G     IVE L +SG
Sbjct: 432 QGCDPDGVSYSTIVEGLARSG 452



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 179/363 (49%), Gaps = 16/363 (4%)

Query: 79  RFFIWAALQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV 134
           R  +   +    R  + MY +     C+ +R+ +   ++ +++ A    GC  ++     
Sbjct: 102 RELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRA----GCCPTLITFNT 157

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           + + C + +    A  +L+KM    ++ D + YN ++   C+ G +  A++L++ M    
Sbjct: 158 LISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASG 217

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             PD++ Y S + G C +G++ DA  + + M+      N+V Y+ +LDG+C+ G ++ AL
Sbjct: 218 CAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTAL 277

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           E++ +M    G C  NVV Y++V+   C  G  +EA  +++ M   GC P+ VT S+L+ 
Sbjct: 278 EMMEQMASSDG-CGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVN 336

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-- 372
           G C  G ++EA + + ++   G   +   Y SLV  L    RL EAE++  +M + G   
Sbjct: 337 GLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGG 396

Query: 373 ---KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
               P     + +I  LC  G++ +    ++ +   G     D   +S ++ GL R   +
Sbjct: 397 HHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQG--CDPDGVSYSTIVEGLARSGRA 454

Query: 430 VEA 432
           ++A
Sbjct: 455 LQA 457



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 145/274 (52%), Gaps = 14/274 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C+  R+++   ++    E  K  GC   V      ++ LC+  ++ + A  VL +M +  
Sbjct: 198 CKAGRLQEAEQLL----ERMKASGCAPDVVAYSSFVYGLCKSGKVLD-AHQVLEQMRDSH 252

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMIKGFCNAGRLEDA 218
             P+ + YN ++   C+ G +  A E+M+ M   D    +++ Y +++ G C  GR ++A
Sbjct: 253 HDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEA 312

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             + + M R GC  ++V YS+L++G+C+ G +E A+E + EM  EG  C PN VTY S++
Sbjct: 313 RSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEG--CKPNAVTYCSLV 370

Query: 279 QIFCGKGMMKEALGILDRMEALG-----CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
              C  G + EA  +++ M + G     C P+  T + LI G C  G +D+A +   ++ 
Sbjct: 371 HGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMR 430

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           + G    G  YS++V  L R+ R  +AE + S++
Sbjct: 431 SQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 144/268 (53%), Gaps = 10/268 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+++ +N ++  F ++G     + L++ M   D+ P++++Y  +++G C   R  +A  L
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 222 FKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            + M   G     ++V YS LL G C+ G +E + ELL E+   G    P+ + YT V+ 
Sbjct: 68  VRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRG--LRPDALMYTKVVA 125

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C    + EAL +L+ M   GC P  +T +TLI G C E NL+ A  L+ K+ A G  +
Sbjct: 126 SLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKA 185

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y++L+  L +  RL+EAE+L  +M ASG  PD +A S  +  LC  G+VL+   + 
Sbjct: 186 DVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVL 245

Query: 400 EDIEKIGFLSSVDSDI--HSVLLLGLCR 425
           E +      S  D ++  ++ +L GLC+
Sbjct: 246 EQMRD----SHHDPNVVTYNTILDGLCK 269



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 99/215 (46%), Gaps = 37/215 (17%)

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M++ G  C PN VT+ +++  F  +G   +   +L+ M A    PN V+ + L++G C  
Sbjct: 1   MDRTG--CPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKL 58

Query: 320 GNLDEAYQLIDKVVAGGSVSSGG--CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
               EA +L+  +++ G  S+     YS+L+    +  +++E+ +L  ++++ G++PD L
Sbjct: 59  ERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDAL 118

Query: 378 ACSVMIRELCLGGQ-------------------------VLEGFCLYEDIEKIGFL---- 408
             + ++  LC   +                         ++ G C  +++E    L    
Sbjct: 119 MYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKM 178

Query: 409 --SSVDSDI--HSVLLLGLCRKNHSVEAAKLARFM 439
             S V +D+  ++ L+ GLC+     EA +L   M
Sbjct: 179 AASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERM 213


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 144/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +G   N V ++ L+DG C+ G +  A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A +
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYVPSV 416



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+   AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RVV-LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A +  G    V    V+ N LC+++++ ++A  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMQASGVQPDVYTYSVLINGLCKESKM-DDANELFDEMLDNGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G ++ A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 255 GRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E ALE    M KE  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGSCKEGDLETALEYRKRMIKE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            ++G  P   T + +I  FC +G++    +L+ ++   G V S
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPS 415


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 146/280 (52%), Gaps = 4/280 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A  V   MP+   + + + Y N+I   CE G +  A +L   M   +  P + TY  +
Sbjct: 246 DNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVL 305

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I     +GR  +A  LF  MK  GC  N+  Y+ L+DG+C+   M+ A ++L EM ++G 
Sbjct: 306 IYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG- 364

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+VVTY ++I  +C +GM+ +A  ILD ME+  C PN  T + LI G C +  + +A
Sbjct: 365 -LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKA 423

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L++K++      S   Y+SL+    +   L+ A +L S M  +G+ PD    SV I  
Sbjct: 424 MALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDT 483

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           LC  G+V E   L++ ++  G     +  I++ L+ G C+
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGV--KANEVIYTALIDGYCK 521



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 190/412 (46%), Gaps = 31/412 (7%)

Query: 70  FPSQSQMGIRFFIWAALQSSYRHSSFMYN-------RA--------CEMSRIKQNPSI-- 112
           F    Q  + FF W AL+  ++H+   Y+       RA          +S IK   SI  
Sbjct: 77  FNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIED 136

Query: 113 IIDVVEAYK------EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
           ++ V+E ++      E     +++    I     K  L +E   V  ++    + P+   
Sbjct: 137 VLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYT 196

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           +N ++  +C+ G+++ A+     +    L+PD  TY S+I G C    +++A  +F +M 
Sbjct: 197 FNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMP 256

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           + GC  N V+Y+ L+ G+C  G +  AL+L  +M ++  +C P V TYT +I    G G 
Sbjct: 257 QKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED--NCCPTVRTYTVLIYALSGSGR 314

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
             EAL + + M+  GC PN  T + LI G C E  +DEA +++ ++   G + S   Y++
Sbjct: 315 KVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNA 374

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+    +   + +A ++   M ++   P+    + +I  LC   +V +   L   + +  
Sbjct: 375 LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK 434

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM----LKKRIWLQGPYVDKI 454
              S+ +  ++ L+ G C+ N    A +L   M    L    W    ++D +
Sbjct: 435 LSPSLIT--YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 157/346 (45%), Gaps = 41/346 (11%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           CE  RI +   +  D+ E    + C  +V+   V+      +    EA+ +  +M E   
Sbjct: 275 CEAGRINEALKLFADMTE----DNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGC 330

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+   Y  +I   C++  M  A +++  M    L P ++TY ++I G+C  G ++DA  
Sbjct: 331 EPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFE 390

Query: 221 LFKVMKRHGCAAN-----------------------------------LVAYSALLDGIC 245
           +  +M+ + C  N                                   L+ Y++L+ G C
Sbjct: 391 ILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQC 450

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           ++  +E A  LL  M + G    P+  TY+  I   C +G ++EA  + D ++A G   N
Sbjct: 451 KVNDLESAYRLLSLMNENG--LVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKAN 508

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  + LI G+C  G +D AY L+++++    + +   Y+ L+  L + K++KEA  L +
Sbjct: 509 EVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVA 568

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           KML  GVKP  +  +++I E+   G       ++  +  +G+   V
Sbjct: 569 KMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDV 614



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 131/251 (52%), Gaps = 3/251 (1%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           ++I  LC+K R  ++AM +L KM E  L P  I YN++I   C+  D+ +A  L+  M  
Sbjct: 409 ELICGLCKK-RKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNE 467

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             L PD  TY   I   C  GR+E+A  LF  +K  G  AN V Y+AL+DG C++G ++ 
Sbjct: 468 NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDV 527

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A  LL  M  +   C PN  TY  +I+  C +  MKEA  ++ +M  +G  P  VT + L
Sbjct: 528 AYSLLERMLNDA--CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTIL 585

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I     +G  D A ++ + +V+ G       Y++ +        L+E + + +KM   G+
Sbjct: 586 IGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGI 645

Query: 373 KPDGLACSVMI 383
            PD +  +V+I
Sbjct: 646 LPDLVTYTVLI 656



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 145/344 (42%), Gaps = 34/344 (9%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ ++  EA  ++ KM    ++P  + Y  +I    + G    A ++   M  +
Sbjct: 550 LIEGLCKEKKM-KEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSL 608

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ TY + +  + + G LE+   +   M   G   +LV Y+ L+DG  RLG   RA
Sbjct: 609 GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRA 668

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE------------------------ 289
            + L  M   G  C P++   + +I+    +  MKE                        
Sbjct: 669 FDFLKCMVDTG--CKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKT 726

Query: 290 -----ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
                AL + ++M   GC  +      LI GFC +  L+EA  L+  +   G   S   Y
Sbjct: 727 LEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIY 786

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +SL+    +     EA +L   M+ +G+ P   +  +++  L + G   +   ++  +  
Sbjct: 787 NSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLS 846

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
            G+  + D     VL+ GL +++   E ++L   M +K    Q 
Sbjct: 847 CGY--NYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQA 888



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 108/264 (40%), Gaps = 32/264 (12%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           V+ KM E  + PD + Y  +I  +   G    A + +K M      P +     +IK   
Sbjct: 636 VIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLS 695

Query: 211 NAGRLED-----------------------------ACGLFKVMKRHGCAANLVAYSALL 241
           +  R+++                             A  LF+ M  HGC  ++  Y AL+
Sbjct: 696 HENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALI 755

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G C+   +E A  L+  M++ G   SP+   Y S++   C  G+  EA+ ++D M   G
Sbjct: 756 AGFCQQERLEEAQGLVHHMKERG--MSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENG 813

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P   +   L+ G  +EG+ ++A  +   +++ G       +  L+  L++   + E  
Sbjct: 814 LLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECS 873

Query: 362 KLFSKMLASGVKPDG-LACSVMIR 384
           +L   M          +AC+ ++R
Sbjct: 874 ELIDIMEEKDATAQADIACAALMR 897



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 2/161 (1%)

Query: 112 IIIDVVEAYKEEGCVVSVKMM-KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           I + + E   E GC + V +   +I   C++ RL  EA  ++  M E  + P   IYN++
Sbjct: 731 IALKLFEKMVEHGCTIDVSIYGALIAGFCQQERL-EEAQGLVHHMKERGMSPSEDIYNSL 789

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +   C+ G    A  L+  M    L P + +Y  ++ G    G  E A  +F  +   G 
Sbjct: 790 LDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGY 849

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
             + VA+  L+DG+ +   ++   EL+  ME++      ++
Sbjct: 850 NYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQADI 890


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 161/322 (50%), Gaps = 13/322 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           CE  RI +  S+ + +    K++ C  +V     +I  LC K    ++AM +L +M E +
Sbjct: 269 CEAGRIDEAVSLFVRM----KDDCCYPNVYTYTALIKGLCRKN--VHKAMGLLDEMLERN 322

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L PD I YN++I   C  G + +A  L+  M    L PD  TY   I   C + R+E+A 
Sbjct: 323 LVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEAR 382

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF  +   G +AN++ YS L+DG C++G ++ A  L  +M  +  +CSPN  T+ ++I 
Sbjct: 383 RLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSK--NCSPNAYTFNALIH 440

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G +KEAL + D+M  +G  P   T + LI     +G+ D+A++ + K+++ G   
Sbjct: 441 GLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKP 500

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y++ +       +++EAE +  +M   GV PD    + +I+     G     F   
Sbjct: 501 VARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAF--- 557

Query: 400 EDIEKIGFLSSVDSDIHSVLLL 421
            D+ K  F +  +   H+ L L
Sbjct: 558 -DVLKSMFDADCEPSHHTFLSL 578



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 135/273 (49%), Gaps = 16/273 (5%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V   ++I  LCE  R+ +EA+ +  +M +    P+   Y  +I+  C K        + K
Sbjct: 259 VSYNQLIHGLCEAGRI-DEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKN-------VHK 310

Query: 189 GMGLID------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
            MGL+D      L PD+ITY S+I G C AG L+ A  L  +MK  G   +   Y   +D
Sbjct: 311 AMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFID 370

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            +C+   +E A  L   + +EG   S NV+ Y+ +I  +C  G + EA  + ++M +  C
Sbjct: 371 FLCKSNRVEEARRLFDSLTEEG--VSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNC 428

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
           +PN  T + LI G C  GNL EA  L D++V  G   +   ++ L+  +++     +A K
Sbjct: 429 SPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHK 488

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
              KM++SG KP     +  I   C  G+V E 
Sbjct: 489 CLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEA 521



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 162/321 (50%), Gaps = 9/321 (2%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K++   +S+K    +  L  +  L +E   +  +M E  +  D   +N +I ++C+ G +
Sbjct: 149 KDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFV 208

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A + M  M    L PD  T  S I G+C +  ++ A  +F+ M       N V+Y+ L
Sbjct: 209 KEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNR----NEVSYNQL 264

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G+C  G ++ A+ L   M+ +   C PNV TYT++I+  C K + K A+G+LD M   
Sbjct: 265 IHGLCEAGRIDEAVSLFVRMKDDC--CYPNVYTYTALIKGLCRKNVHK-AMGLLDEMLER 321

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
              P+ +T ++LI G C  G+LD AY+L+  +   G V     Y   +  L ++ R++EA
Sbjct: 322 NLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEA 381

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +LF  +   GV  + +  SV+I   C  G+V E  CL+E +  +    S ++   + L+
Sbjct: 382 RRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKM--LSKNCSPNAYTFNALI 439

Query: 421 LGLCRKNHSVEAAKLARFMLK 441
            GLC   +  EA  L   M+K
Sbjct: 440 HGLCSAGNLKEALSLFDQMVK 460



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 143/337 (42%), Gaps = 34/337 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC    L  EA+ +  +M +  L+P    +N +I    ++GD   A + ++ M   
Sbjct: 438 LIHGLCSAGNL-KEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSS 496

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P   TY + I+ +C+AG++++A  +   MK  G   +   Y++L+    +LG    A
Sbjct: 497 GEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSA 556

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG--------------------- 292
            ++L  M     DC P+  T+ S+I+    K  + E  G                     
Sbjct: 557 FDVLKSMFD--ADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKM 614

Query: 293 --------ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
                   + + ME  GC P+      LI G C   NL  A +L+D++   G   S   +
Sbjct: 615 MEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVF 674

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++++    + ++  EA  +   M+ SG  P    C  +I  L   G+   G  +++ +  
Sbjct: 675 NAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRG 734

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            G+  + D     +L+ G+ ++    E ++L   M K
Sbjct: 735 CGY--NDDEIAWKILIDGMLKQGLVEEFSQLFEEMEK 769



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 31/270 (11%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            EA  ++ +M E  + PD   Y ++I+ + + G   +A +++K M   D  P   T++S+
Sbjct: 519 QEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSL 578

Query: 206 IK---------------GFCNAGRLEDACG--------------LFKVMKRHGCAANLVA 236
           IK               G  +     D  G              LF+ M++HGC  +   
Sbjct: 579 IKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKC 638

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y  L+ GIC++ ++  AL+LL +M+KEG   SP+ + + +VI   C      EA  I++ 
Sbjct: 639 YEKLISGICKVENLGIALKLLDQMQKEG--ISPSEMVFNAVISCCCKLQKYGEAANIVED 696

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M   G +P      TLI G   EG  +    +  K+   G       +  L+  +++   
Sbjct: 697 MICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGL 756

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           ++E  +LF +M  +G        S++ ++L
Sbjct: 757 VEEFSQLFEEMEKNGCNFSPRTYSILTQKL 786



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 118/290 (40%), Gaps = 31/290 (10%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A   L+KM     +P    YN  I ++C  G +  A+++M  M    + PD  TY S+
Sbjct: 484 DDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSL 543

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL------------------------ 241
           IK +   G    A  + K M    C  +   + +L+                        
Sbjct: 544 IKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNF 603

Query: 242 -----DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
                  + ++   +  +EL  EMEK G  C+P+   Y  +I   C    +  AL +LD+
Sbjct: 604 GDVPGSNMWKMMEFDIVIELFEEMEKHG--CTPDSKCYEKLISGICKVENLGIALKLLDQ 661

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M+  G +P+ +  + +I   C      EA  +++ ++  G         +L+  L     
Sbjct: 662 MQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGE 721

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            +    +F K+   G   D +A  ++I  +   G V E   L+E++EK G
Sbjct: 722 TERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNG 771



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 16/249 (6%)

Query: 197 PDIITYVSMIK---GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           P II  VSMIK      +A  + D C   K+ K      +L  Y+ LL  + R G ++  
Sbjct: 121 PKII--VSMIKCCYSAPDALFVSDICR--KMSKDDITKLSLKCYNELLTLLARFGLVDEM 176

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  EM +E    S ++ T+  +I ++C  G +KEA   + +M   G +P+  T ++ I
Sbjct: 177 NQLYTEMLEEF--VSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFI 234

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C   ++D A+++ +++     VS    Y+ L+  L    R+ EA  LF +M      
Sbjct: 235 LGYCRSKDVDSAFRVFEEMPNRNEVS----YNQLIHGLCEAGRIDEAVSLFVRMKDDCCY 290

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    + +I+ LC    V +   L +++ +   +   D   ++ L+ G CR  H   A 
Sbjct: 291 PNVYTYTALIKGLC-RKNVHKAMGLLDEMLERNLVP--DLITYNSLIAGQCRAGHLDSAY 347

Query: 434 KLARFMLKK 442
           +L   M ++
Sbjct: 348 RLLSLMKER 356



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 4/174 (2%)

Query: 112 IIIDVVEAYKEEGCVVSVKMM-KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           I+I++ E  ++ GC    K   K+I  +C+   L   A+ +L +M +  + P  +++N V
Sbjct: 619 IVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGI-ALKLLDQMQKEGISPSEMVFNAV 677

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I   C+      A  +++ M      P +    ++I G    G  E    +FK ++  G 
Sbjct: 678 ISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGY 737

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
             + +A+  L+DG+ + G +E   +L  EMEK G + SP   TY+ + Q   GK
Sbjct: 738 NDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPR--TYSILTQKLHGK 789


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 148/287 (51%), Gaps = 2/287 (0%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC+ +      + +    A +  EAM V   M      PDT +Y  ++   CE G    A
Sbjct: 137 GCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEA 196

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           + L++        P+I+ Y ++I G+CNAG +E A  +F+ M  + C+ N+  Y+ L+ G
Sbjct: 197 EVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHG 256

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +C+ G +ERA+ L   M + G    PNVVTYT++IQ  C +G ++ A  +L  ME  G  
Sbjct: 257 LCKSGKVERAMVLFSRMVEAG--LEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLV 314

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN  T S LI   C    ++EA   +  +V  G   +   Y+SL+  L +T ++  A++L
Sbjct: 315 PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADEL 374

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             KM++ G  PD  + S +I  LC   ++ +   + ED+ + G  +S
Sbjct: 375 MQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 150/291 (51%), Gaps = 10/291 (3%)

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
           GM      PD   Y +M+ G C AGR E+A  L +    +G   N+V Y+AL+DG C  G
Sbjct: 167 GMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAG 226

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ME AL++   M+  G  CSPNV TYT +I   C  G ++ A+ +  RM   G  PN VT
Sbjct: 227 EMEHALKVFEGMD--GNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVT 284

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + LI+G C EG+L  A++L+  +   G V +   +S L+  L + ++++EA+     ++
Sbjct: 285 YTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLV 344

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             GVK + +  + +I  LC  G++     L + +   GF+   D+  +S L+ GLCR+  
Sbjct: 345 KKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVP--DAHSYSSLIDGLCRQKK 402

Query: 429 SVEAAKLARFMLKKRIWLQGPY-----VDKIVEHLKKSGDEELITNLPKIG 474
             +A  +   M++K I    P      +D++V  +   G +++   +   G
Sbjct: 403 LSQATLMLEDMMEKGIQ-ASPVTYTIIIDELVREVGSEGPKKIFDKMIATG 452



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 150/309 (48%), Gaps = 8/309 (2%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +MP  +LR     Y  +I  +C  GD+ AA + +  +    L PD   Y S + G+C AG
Sbjct: 66  RMPARNLR----TYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAG 121

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            L  AC +F +M   GC      Y+ALL G+   G +  A+ +   M  +   C+P+   
Sbjct: 122 MLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADS--CAPDTHV 179

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y +++   C  G  +EA  +L+   + G  PN V  + LI G+C  G ++ A ++ + + 
Sbjct: 180 YATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMD 239

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
                 +   Y+ L+  L ++ +++ A  LFS+M+ +G++P+ +  + +I+  C  G + 
Sbjct: 240 GNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQ 299

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
             F L   +E  G +   +    SVL+  LC++    EA      ++KK + +       
Sbjct: 300 CAFRLLHLMETNGLVP--NDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTS 357

Query: 454 IVEHLKKSG 462
           +++ L K+G
Sbjct: 358 LIDGLCKTG 366



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 160/327 (48%), Gaps = 9/327 (2%)

Query: 114 IDVVEAYKEEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V E      C  +V+   ++I  LC+  ++   AM +  +M E  L P+ + Y  +I+
Sbjct: 232 LKVFEGMDGNRCSPNVRTYTELIHGLCKSGKV-ERAMVLFSRMVEAGLEPNVVTYTALIQ 290

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C +G +  A  L+  M    L P+  T+  +I   C   ++E+A      + + G   
Sbjct: 291 GQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKV 350

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N V Y++L+DG+C+ G ++ A EL+ +M  EG    P+  +Y+S+I   C +  + +A  
Sbjct: 351 NEVVYTSLIDGLCKTGKIDAADELMQKMISEG--FVPDAHSYSSLIDGLCRQKKLSQATL 408

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L+ M   G   + VT + +I     E   +   ++ DK++A G       Y+  V    
Sbjct: 409 MLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYC 468

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              R+++AE +  +M+  GV P+ +  + +IR     G V + F  +E +   G+  + D
Sbjct: 469 EEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNED 528

Query: 413 SDIHSVLLLGLCRK---NHSVEAAKLA 436
           S  ++VLL  + +K   ++SV+  K+A
Sbjct: 529 S--YTVLLRLVVKKSSSDNSVDIWKIA 553


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 163/309 (52%), Gaps = 9/309 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V +  ++   C + R++ +A+ ++ KM E   +PD + YN +I   C+   +  A +  K
Sbjct: 156 VTIGSLVNGFCRRNRVS-DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFK 214

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +    + P+++TY +++ G CN+ R  DA  L   M +     N++ YSALLD   + G
Sbjct: 215 EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNG 274

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  A EL  EM +   D  P++VTY+S++   C    + EA  + D M + GC  + V+
Sbjct: 275 KVLEAKELFEEMVRMSID--PDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVS 332

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI GFC    +++  +L  ++   G VS+   Y++L+    +   + +A++ FS+M 
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRK 426
             G+ PD    ++++  LC  G++ +   ++ED++K      +D DI  ++ ++ G+C+ 
Sbjct: 393 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQK----REMDLDIVTYTTVIRGMCKT 448

Query: 427 NHSVEAAKL 435
               EA  L
Sbjct: 449 GKVEEAWSL 457



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 160/318 (50%), Gaps = 4/318 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L KM +    PD +   +++  FC +  +  A  L+  M  I   PDI+ Y ++I 
Sbjct: 139 ALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIID 198

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             C   R+ DA   FK ++R G   N+V Y+AL++G+C       A  LL +M K+    
Sbjct: 199 SLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK--KI 256

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +PNV+TY++++  F   G + EA  + + M  +   P+ VT S+L+ G C+   +DEA Q
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQ 316

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           + D +V+ G ++    Y++L+    + KR+++  KLF +M   G+  + +  + +I+   
Sbjct: 317 MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFF 376

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
             G V +    +  ++  G   S D   +++LL GLC      +A  +   M K+ + L 
Sbjct: 377 QAGDVDKAQEFFSQMDFFGI--SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLD 434

Query: 448 GPYVDKIVEHLKKSGDEE 465
                 ++  + K+G  E
Sbjct: 435 IVTYTTVIRGMCKTGKVE 452



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 150/282 (53%), Gaps = 3/282 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC  +R ++ A  +L  M +  + P+ I Y+ ++  F + G ++ A EL +
Sbjct: 226 VTYTALVNGLCNSSRWSDAAR-LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFE 284

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M  + + PDI+TY S++ G C   R+++A  +F +M   GC A++V+Y+ L++G C+  
Sbjct: 285 EMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAK 344

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E  ++L  EM + G     N VTY ++IQ F   G + +A     +M+  G +P+  T
Sbjct: 345 RVEDGMKLFREMSQRG--LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWT 402

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + L+ G C  G L++A  + + +           Y++++  + +T +++EA  LF  + 
Sbjct: 403 YNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLS 462

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             G+KPD +  + M+  LC  G + E   LY  +++ G + +
Sbjct: 463 LKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 166/340 (48%), Gaps = 12/340 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVE-AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           + N  C  +R+    S++  +VE  YK +     V    +I +LC+  R+ N+A    ++
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPD----IVAYNAIIDSLCKTKRV-NDAFDFFKE 215

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           +    +RP+ + Y  ++   C       A  L+  M    + P++ITY +++  F   G+
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           + +A  LF+ M R     ++V YS+L++G+C    ++ A ++   M  +G  C  +VV+Y
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKG--CLADVVSY 333

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            ++I  FC    +++ + +   M   G   N VT +TLI+GF   G++D+A +   ++  
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 393

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y+ L+  L     L++A  +F  M    +  D +  + +IR +C  G+V E
Sbjct: 394 FGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 453

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN--HSVEA 432
            + L+  +   G    + +  ++ ++ GLC K   H VEA
Sbjct: 454 AWSLFCSLSLKGLKPDIVT--YTTMMSGLCTKGLLHEVEA 491



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 17/232 (7%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC+  V     + N   KA+   + M + R+M +  L  +T+ YN +I+ F + GD+  
Sbjct: 324 KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDK 383

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E    M    + PDI TY  ++ G C+ G LE A  +F+ M++     ++V Y+ ++ 
Sbjct: 384 AQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIR 443

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C+ G +E A  L   +  +G    P++VTYT+++   C KG++ E   +  +M+  G 
Sbjct: 444 GMCKTGKVEEAWSLFCSLSLKG--LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-------SVSSGGCYSSL 347
             N  T+S        +G++  + +LI K+++ G        + SG C  +L
Sbjct: 502 MKNDCTLS--------DGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKAL 545



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 148/318 (46%), Gaps = 4/318 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A+ +   M +    P  + +N ++    +         L K M ++ +  D+ T+  +
Sbjct: 67  NDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIV 126

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC   ++  A  +   M + G   + V   +L++G CR   +  A+ L+ +M + G 
Sbjct: 127 INCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG- 185

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P++V Y ++I   C    + +A      +E  G  PN VT + L+ G C      +A
Sbjct: 186 -YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L+  ++      +   YS+L+   V+  ++ EA++LF +M+   + PD +  S ++  
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNG 304

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           LCL  ++ E   +++ +   G L+ V S  ++ L+ G C+     +  KL R M ++ + 
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVS--YNTLINGFCKAKRVEDGMKLFREMSQRGLV 362

Query: 446 LQGPYVDKIVEHLKKSGD 463
                 + +++   ++GD
Sbjct: 363 SNTVTYNTLIQGFFQAGD 380



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 123/266 (46%), Gaps = 43/266 (16%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L DA  LF  M +     ++V ++ LL  I +L   +  + L  +ME  G     ++ T
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLG--IRNDLYT 122

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           +  VI  FC    +  AL IL +M  LG  P+RVTI +L+ GFC    + +A  L+DK+V
Sbjct: 123 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC------ 387
             G       Y++++  L +TKR+ +A   F ++   G++P+ +  + ++  LC      
Sbjct: 183 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 242

Query: 388 -----------------------------LGGQVLEGFCLYEDIEKIGFLSSVDSDI--H 416
                                          G+VLE   L+E++ ++    S+D DI  +
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM----SIDPDIVTY 298

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKK 442
           S L+ GLC  +   EA ++   M+ K
Sbjct: 299 SSLVNGLCLHDRIDEANQMFDLMVSK 324


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 146/272 (53%), Gaps = 4/272 (1%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I G C
Sbjct: 153 VFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLC 212

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
               ++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +     P+
Sbjct: 213 KESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQX--LLPD 270

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           ++TY +++   C KG + +A G++D M   G  P++ T +TLI G C EG+LD A++   
Sbjct: 271 JITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRK 330

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C  G
Sbjct: 331 RMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKG 390

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
            V +G  L +++++ G +  V +  ++VL+ G
Sbjct: 391 DVWKGSKLLKEMQRNGHVPXVVT--YNVLMNG 420



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 3/187 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM + ++M    L PD I YN ++   C+KGD+  A  L+ 
Sbjct: 237 VTFTTLIDGHCKNGRV-DLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLID 295

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    L PD  TY ++I G C  G L+ A    K M +     + VAY+AL+ G+C+ G
Sbjct: 296 EMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEG 355

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G    P+  TYT +I  FC KG + +   +L  M+  G  P  VT
Sbjct: 356 RSXDAEKMLREMLSVG--LKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVT 413

Query: 309 ISTLIKG 315
            + L+ G
Sbjct: 414 YNVLMNG 420



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A +  G    V    V+ N LC+++ + ++A  +  +M    L P+ + +  +I   C+ 
Sbjct: 191 AMRASGVQPDVYTYSVLINGLCKESXM-DDANELFDEMLVKGLVPNXVTFTTLIDGHCKN 249

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PDJITY +++ G C  G L  A GL   M   G   +   Y
Sbjct: 250 GRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTY 309

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G ++ A E    M +E  +   + V YT++I   C +G   +A  +L  M
Sbjct: 310 TTLIDGCCKEGDLDAAFEHRKRMIQE--NIRLDDVAYTALISGLCQEGRSXDAEKMLREM 367

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            ++G  P+  T + +I  FC +G++ +  +L+ ++   G V     Y+ L+
Sbjct: 368 LSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLM 418



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 114/247 (46%), Gaps = 8/247 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    R  +L+
Sbjct: 60  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKL----RYFKLV 115

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 116 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNG 175

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   + A G       YS L+  L +   + +A +LF +ML  G+ P+
Sbjct: 176 YIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPN 235

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  + +I   C  G+V     +Y+ +     L  + +  ++ L+ GLC+K    +A  L
Sbjct: 236 XVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJIT--YNTLVYGLCKKGDLNQAHGL 293

Query: 436 ARFMLKK 442
              M  K
Sbjct: 294 IDEMXXK 300


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 152/299 (50%), Gaps = 5/299 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K +L NEA     +M    + PD I Y+ +I  FC  G ++ A  L+  M L 
Sbjct: 278 IIDGLC-KDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLK 336

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ PD+ TY  +I   C  G+L++A  L  VM + G   N+V YS L+DG C +G +  A
Sbjct: 337 NINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNA 396

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++   M +   + +P+V +Y  +I   C    + EA+ +L  M      PN VT ++LI
Sbjct: 397 KQIFHAMVQT--EVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLI 454

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G +  A  L+ ++   G  +    Y+SL+  L + + L +A  LF KM   G++
Sbjct: 455 DGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQ 514

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           P+    + +I  LC G ++     L++ I   G    +D   ++V++ GLC++    EA
Sbjct: 515 PNKYTYTALIDGLCKGARLKNAQKLFQHILVKG--CCIDVYTYNVMIGGLCKEGMLDEA 571



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 114/203 (56%), Gaps = 3/203 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K +  +EAM +LR+M   ++ P+T+ YN++I   C+ G + +A +LMK +   
Sbjct: 418 MINGLC-KGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHR 476

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               D+ITY S++ G C    L+ A  LF  MK  G   N   Y+AL+DG+C+   ++ A
Sbjct: 477 GQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNA 536

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L   +  +G  C  +V TY  +I   C +GM+ EAL +  +ME  GC P+ VT   +I
Sbjct: 537 QKLFQHILVKG--CCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIII 594

Query: 314 KGFCVEGNLDEAYQLIDKVVAGG 336
           +    +   D+A +L+ +++A G
Sbjct: 595 RSLFEKDENDKAEKLLHEMIAKG 617



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 2/228 (0%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            + A  +   M + ++ P    YN +I   C+   +  A  L++ M   ++ P+ +TY S
Sbjct: 393 VHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNS 452

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C +GR+  A  L K +   G  A+++ Y++LLDG+C+  ++++A+ L  +M++ G
Sbjct: 453 LIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERG 512

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PN  TYT++I   C    +K A  +   +   GC  +  T + +I G C EG LDE
Sbjct: 513 --IQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDE 570

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           A  +  K+   G +     +  ++  L       +AEKL  +M+A G+
Sbjct: 571 ALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 149/336 (44%), Gaps = 39/336 (11%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  I +  ++    +      A  L K M +  + PD++T   +I  FC+ G++  +  +
Sbjct: 130 PSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSV 189

Query: 222 F-KVMK----------------------------------RHGCAANLVAYSALLDGICR 246
             K++K                                    G   N V+Y  LL+G+C+
Sbjct: 190 LGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCK 249

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
           +G    A++LL  +E       P+VV Y ++I   C   ++ EA      M + G  P+ 
Sbjct: 250 IGETRCAIKLLRMIEDR--STRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDV 307

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           +T STLI GFC+ G L  A+ L++++           Y+ L+  L +  +LKEA+ L   
Sbjct: 308 ITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGV 367

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M   GVKP+ +  S ++   CL G+V     ++  + +     SV S  +++++ GLC+ 
Sbjct: 368 MTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCS--YNIMINGLCKG 425

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
               EA  L R ML K +       + +++ L KSG
Sbjct: 426 KSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSG 461



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 128/258 (49%), Gaps = 8/258 (3%)

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
           GM L+   P II +  ++           A  L K M+  G   +LV  S L++  C LG
Sbjct: 122 GMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLG 181

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            M  +  +LG++ K G    PN +  T++++  C KG +K++L   D++ A G   N+V+
Sbjct: 182 QMAFSFSVLGKILKLG--YQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVS 239

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
             TL+ G C  G    A +L+  +    +      Y++++  L + K + EA   +++M 
Sbjct: 240 YGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMN 299

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRK 426
           + G+ PD +  S +I   CL GQ++  F L  ++     L +++ D+  +++L+  LC++
Sbjct: 300 SRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMT----LKNINPDVYTYTILIDALCKE 355

Query: 427 NHSVEAAKLARFMLKKRI 444
               EA  L   M K+ +
Sbjct: 356 GKLKEAKNLLGVMTKEGV 373


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 144/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++ A  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P++VT +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLMKEMQRDGYVPSV 416



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 3/180 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+ 
Sbjct: 242 VTFTTLIDGHCKNGRV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLID 300

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  L PD +TY ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G
Sbjct: 301 EMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G    P + TYT +I  FC KG +     ++  M+  G  P+ VT
Sbjct: 361 RSVDAEKMLREMLSVG--LKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 115/240 (47%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ K H           +L+ + +L    +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               ++  +C    ++  +  ++  FC +G +K A  + D +   G  P  V+ +TL+ G
Sbjct: 121 WGFYEDSLECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L + + A G       YS L+  L +  ++  A +LF++ML +G+ P+
Sbjct: 181 YIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 241 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQAQDL 298


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 144/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + G++     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  + D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G+  SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYAPSV 416



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L   M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G AP+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYAPSVVT 418



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 126/284 (44%), Gaps = 39/284 (13%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRH----------------------------- 228
           DI  +  +I  +  +G L DA   +++ K H                             
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 229 ------GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
                 G  A+L  ++ L+    + G +  A  +   + K G    P+VV++ +++  + 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWG--LRPSVVSFNTLMNGYI 182

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G + E   + + M+A G  P+  T S LI G C E  +D+A +L D+++  G V +G 
Sbjct: 183 KLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            +++L+    +  R+  A +++ +ML+  + PD +  + +I  LC  G + +   L +++
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEM 302

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
              G     D   ++ L+ G C++ H   A +  + M+K+ I L
Sbjct: 303 SMKGL--KPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRL 344


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 141/264 (53%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++ A GLF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P++ T +TLI G C EG+LD A++
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    ++++ E C
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G   SV
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHAPSV 422



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 4/238 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L   +      
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ + G   S  +  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 131 EEILECGYPAS--LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+LDE ++L   ++A G       YS L+  L +  ++  A  LF +ML  G+ P+G+
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGV 248

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP--DLITYNTLIYGLCKKGDLKQAHDL 304



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC++ R + +A  +LR+M    L+PDT  Y  ++  FC+KGD+    +L+K
Sbjct: 353 VAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLK 411

Query: 189 GMGLIDLYPDIITYVSMIKG 208
            M      P ++TY  ++ G
Sbjct: 412 EMQRDGHAPSVVTYNVLMNG 431


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC  +++ N A  +  +M    + PD   Y  +I  FC+ G +  A +    M  
Sbjct: 485 KVIGLLCNASKVDN-AFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVR 543

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P+++TY ++I  +  A ++  A  LF++M   GC  N+V Y+AL+DG C+ G +E+
Sbjct: 544 DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEK 603

Query: 253 ALELLGEME--------------KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A ++   M                +G    PN+ TY +++   C    +KEA  +LD M 
Sbjct: 604 ACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMS 663

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             GC PN +    LI GFC  G LDEA  +  K+   G   +   YSSL+  L + KRL 
Sbjct: 664 VEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLD 723

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ S+ML +   P+ +  + MI  LC  G+  E + L   +E+ G
Sbjct: 724 LALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKG 771



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 5/305 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC KA    EA  +L  M      P+ I+Y+ +I  FC+ G +  A  +   M      P
Sbjct: 646 LC-KAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGP 704

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           ++ TY S+I       RL+ A  +   M  + CA N++ Y+ ++DG+C++G  + A  L+
Sbjct: 705 NVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLM 764

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             ME++G  C PNVVTYT++I  F   G + + L ++ +M A GCAPN VT   LI   C
Sbjct: 765 SMMEEKG--CHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCC 822

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G LD+A+QL+D++           Y  ++    R   +     L  ++  +   P   
Sbjct: 823 AAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLG--LLDEIAENVAVPIIP 880

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           A  ++I   C  G++     L++++      S+ D D++S L+  L   +   +A +L  
Sbjct: 881 AYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYA 940

Query: 438 FMLKK 442
            M+K+
Sbjct: 941 DMIKR 945



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 180/391 (46%), Gaps = 23/391 (5%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM 103
           +  +K L   + KL+ T V++VL        ++G++FFIWA  Q  Y H+  +Y+   E+
Sbjct: 114 HKTQKFLRQFREKLNETLVVDVLS--LVKNPELGVKFFIWAGRQIGYGHTGPVYHALLEV 171

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
                N  +    +   ++E   +  K++ V+   C +  L N A+  L ++ +   +P 
Sbjct: 172 LGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPS 231

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
            + YN ++R+F E   +  A  + + M       D  T    +   C AGR  +A  L  
Sbjct: 232 RLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALAL-- 289

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            +++     + V Y+ ++ G+C     E A++ L  M      C PNVVTY  ++   CG
Sbjct: 290 -IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSS--CIPNVVTYRILL---CG 343

Query: 284 KGMMKEALG----ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             + K  LG    IL  M   GC P+R   ++LI  +C  G+   AY+L+ K+   G   
Sbjct: 344 -CLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQP 402

Query: 340 SGGCYSSLVVELVRTKRLKE------AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
               Y+ L+  +   ++L        AEK + +ML + V  + +  S + R LC  G+  
Sbjct: 403 GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFE 462

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           + + +  ++   GF+   D+  +S ++  LC
Sbjct: 463 KAYSIIREMMSKGFIP--DTSTYSKVIGLLC 491



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  +V     + +   KAR  + A  +   M      P+ + Y  +I   C+ G +  
Sbjct: 544 DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEK 603

Query: 183 ADEL---MKGMGLI---DLY----------PDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           A ++   M+G   I   D+Y          P+I TY +++ G C A ++++A  L  VM 
Sbjct: 604 ACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMS 663

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             GC  N + Y AL+DG C++G ++ A  +  +M + G    PNV TY+S+I        
Sbjct: 664 VEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG--YGPNVYTYSSLIDRLFKDKR 721

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +  AL +L RM    CAPN +  + +I G C  G  DEAY+L+  +   G   +   Y++
Sbjct: 722 LDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTA 781

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++    +  ++ +  +L  +M A G  P+ +   V+I   C  G + +   L +++++
Sbjct: 782 MIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 18/260 (6%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           +N+ R  C  G    A  +++ M      PD  TY  +I   CNA ++++A  LF+ MK 
Sbjct: 449 SNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS 508

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
           +    ++  Y+ L+D  C++G +++A +   EM ++G  C+PNVVTYT++I  +     M
Sbjct: 509 NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG--CAPNVVTYTALIHAYLKARKM 566

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV--------------V 333
             A  + + M + GC PN VT + LI G C  G +++A Q+  ++              +
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI 626

Query: 334 AGGSVSSGG--CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
             G++       Y +LV  L +  ++KEA  L   M   G +P+ +    +I   C  G+
Sbjct: 627 DDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 392 VLEGFCLYEDIEKIGFLSSV 411
           + E   ++  + + G+  +V
Sbjct: 687 LDEAQMVFTKMSERGYGPNV 706



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 6/230 (2%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ VL +M E    P+ IIY  +I   C+ G    A  LM  M     +P+++TY +MI 
Sbjct: 725 ALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMID 784

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF  AG+++    L + M   GCA N V Y  L++  C  G ++ A +LL EM++     
Sbjct: 785 GFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYW-- 842

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             ++  Y  VI+ F  + ++  +LG+LD +      P       LI  FC  G L+ A +
Sbjct: 843 PKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALE 900

Query: 328 LIDKVVAGGSVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           L  ++ +  S S+     YSSL+  L    ++ +A +L++ M+  G  P+
Sbjct: 901 LHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPE 950



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 8/245 (3%)

Query: 122 EEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E  C  +V +  ++I  LC+  +  +EA  ++  M E    P+ + Y  +I  F + G +
Sbjct: 734 ENSCAPNVIIYTEMIDGLCKVGK-TDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKV 792

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
               ELM+ MG     P+ +TY  +I   C AG L+DA  L   MK+     ++  Y  +
Sbjct: 793 DKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKV 852

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++G  R      +L LL E+ +      P +  Y  +I  FC  G ++ AL +   M + 
Sbjct: 853 IEGFNR--EFIISLGLLDEIAENVA--VPIIPAYRILIDSFCKAGRLELALELHKEMSSC 908

Query: 301 G--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
               A ++   S+LI+   +   +D+A++L   ++  G +     +  LV  L+R  R +
Sbjct: 909 TSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWE 968

Query: 359 EAEKL 363
           EA +L
Sbjct: 969 EALQL 973


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 174/383 (45%), Gaps = 37/383 (9%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V+E     GC + V    ++ N +C++  + +EA+ +LR +P F   PD + YN V++
Sbjct: 177 VRVLEDLHARGCALDVGNCNLVLNAICDQGSV-DEALHLLRDLPSFGCEPDVVSYNAVLK 235

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C         ELM+ M  +   P+I+T+ ++I   C  G  E    +   M  HGC  
Sbjct: 236 GLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTP 295

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG---------------------------- 264
           ++  Y+ ++DGIC+ G +E A E+L  M   G                            
Sbjct: 296 DIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELL 355

Query: 265 -----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
                 DC  + VT+  ++  FC  G++   + +L++M   GC P+ +T +T+I GFC E
Sbjct: 356 AEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKE 415

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +DEA  L+  + A G   +   Y+ ++  L   +R  +AE L S+M+  G   + +  
Sbjct: 416 GLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITF 475

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + +I  LC  G V +   L + +   G   S D   +S ++ GL +   + EA +L   M
Sbjct: 476 NTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTDEALELLNVM 533

Query: 440 LKKRIWLQGPYVDKIVEHLKKSG 462
           + K +         I   L + G
Sbjct: 534 VNKGMSPNTIIYSSIASALSREG 556



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 167/327 (51%), Gaps = 6/327 (1%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +V+    E GC   ++M   I + +C++  L   A  +L +MP + L+P+ + YN +++ 
Sbjct: 283 EVLAQMVEHGCTPDIRMYATIIDGICKEGHL-EVAHEILNRMPSYGLKPNVVCYNTLLKG 341

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C        +EL+  M   D   D +T+  ++  FC  G ++    L + M   GC  +
Sbjct: 342 LCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPD 401

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           ++ Y+ +++G C+ G ++ A+ LL  M   G  C PN ++YT V++  C      +A  +
Sbjct: 402 VITYTTVINGFCKEGLIDEAVMLLKSMTACG--CKPNTISYTIVLKGLCSAERWVDAEDL 459

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           + +M   GC  N +T +TLI   C +G +++A +L+ +++  G       YS+++  L +
Sbjct: 460 MSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 519

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             +  EA +L + M+  G+ P+ +  S +   L   G++ +   ++++I+     S  D+
Sbjct: 520 AGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRS--DA 577

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFML 440
            +++ ++  LC++  +  A +   +M+
Sbjct: 578 VLYNAVISSLCKRGETERAIEFLAYMV 604



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 138/267 (51%), Gaps = 8/267 (2%)

Query: 134 VIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V FN+     C+   L +  + +L +M E    PD I Y  VI  FC++G +  A  L+K
Sbjct: 368 VTFNILVDFFCQNG-LVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLK 426

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P+ I+Y  ++KG C+A R  DA  L   M + GC  N + ++ L++ +C+ G
Sbjct: 427 SMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 486

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E+A+ELL +M   G  CSP++++Y++VI      G   EAL +L+ M   G +PN + 
Sbjct: 487 LVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTII 544

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S++      EG +++  Q+ D +      S    Y++++  L +    + A +  + M+
Sbjct: 545 YSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMV 604

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEG 395
           +SG  P+    +++IR L   G V E 
Sbjct: 605 SSGCVPNESTYTILIRGLASEGFVKEA 631



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 4/347 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++     GC     M  VI     +      A+ VL  +       D    N V+   C
Sbjct: 144 VLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAIC 203

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G +  A  L++ +      PD+++Y +++KG C A R      L + M R  C  N+V
Sbjct: 204 DQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV 263

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L+  +CR G  ER  E+L +M + G  C+P++  Y ++I   C +G ++ A  IL+
Sbjct: 264 TFNTLISYLCRNGLFERVHEVLAQMVEHG--CTPDIRMYATIIDGICKEGHLEVAHEILN 321

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           RM + G  PN V  +TL+KG C     +E  +L+ ++           ++ LV    +  
Sbjct: 322 RMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNG 381

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            +    +L  +ML  G  PD +  + +I   C  G + E   L + +   G   +  S  
Sbjct: 382 LVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTIS-- 439

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           ++++L GLC     V+A  L   M+++   L     + ++  L K G
Sbjct: 440 YTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 486



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 155/306 (50%), Gaps = 5/306 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+  LC + R+A +A+ VL +MP     P   +Y+ ++   C  G   +A  +++ +   
Sbjct: 128 VVRALCARGRIA-DALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHAR 186

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               D+     ++   C+ G +++A  L + +   GC  ++V+Y+A+L G+C        
Sbjct: 187 GCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCV 246

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL+ EM +    C PN+VT+ ++I   C  G+ +    +L +M   GC P+    +T+I
Sbjct: 247 QELMEEMVRMA--CPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATII 304

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C EG+L+ A+++++++ + G   +  CY++L+  L   +R +E E+L ++M      
Sbjct: 305 DGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCP 364

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            D +  ++++   C  G V     L E + + G +  V +  ++ ++ G C++    EA 
Sbjct: 365 LDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVIT--YTTVINGFCKEGLIDEAV 422

Query: 434 KLARFM 439
            L + M
Sbjct: 423 MLLKSM 428



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 132/259 (50%), Gaps = 2/259 (0%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +I+++E   E GC+  V     + N   K  L +EA+ +L+ M     +P+TI Y  V++
Sbjct: 386 VIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLK 445

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C     + A++LM  M       + IT+ ++I   C  G +E A  L K M  +GC+ 
Sbjct: 446 GLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 505

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L++YS ++DG+ + G  + ALELL  M  +G   SPN + Y+S+      +G + + + 
Sbjct: 506 DLISYSTVIDGLGKAGKTDEALELLNVMVNKG--MSPNTIIYSSIASALSREGRINKVIQ 563

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D ++      + V  + +I   C  G  + A + +  +V+ G V +   Y+ L+  L 
Sbjct: 564 MFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLA 623

Query: 353 RTKRLKEAEKLFSKMLASG 371
               +KEA+++ +++ + G
Sbjct: 624 SEGFVKEAQEMLTELCSKG 642



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 136/307 (44%), Gaps = 20/307 (6%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN ++  +C  G + +A  L      + + P+  TY  +++  C  GR+ DA  +   M 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAA---VPVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           R GCA     Y  +L+  CR G    A+ +L ++   G  C+ +V     V+   C +G 
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG--CALDVGNCNLVLNAICDQGS 207

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + EAL +L  + + GC P+ V+ + ++KG C+        +L++++V      +   +++
Sbjct: 208 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 267

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+  L R    +   ++ ++M+  G  PD    + +I  +C  G +     +   +   G
Sbjct: 268 LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 327

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL-------------QGPYVDK 453
              +V    ++ LL GLC      E  +L   M  K   L             Q   VD+
Sbjct: 328 LKPNVVC--YNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDR 385

Query: 454 IVEHLKK 460
           ++E L++
Sbjct: 386 VIELLEQ 392



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 125/277 (45%), Gaps = 18/277 (6%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S+I+  C AGR  +A    + +   G  A +VAY+A++ G CR G +E A  L   +   
Sbjct: 63  SLIRSLCAAGRTAEA---ARALSAAGGGAGVVAYNAMVAGYCRAGQLESARRLAAAVP-- 117

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
                PN  TY  V++  C +G + +AL +LD M   GCAP       +++  C  G   
Sbjct: 118 ---VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFR 174

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A ++++ + A G     G  + ++  +     + EA  L   + + G +PD ++ + ++
Sbjct: 175 SAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVL 234

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI-HSVLLLGLCRKN-----HSVEAAKLAR 437
           + LC+  +     C+ E +E++  ++   + +  + L+  LCR       H V  A++  
Sbjct: 235 KGLCMAKR---WGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEV-LAQMVE 290

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
                 I +    +D I +        E++  +P  G
Sbjct: 291 HGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 327



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 67/152 (44%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I++++     GC   +     + +   KA   +EA+ +L  M    + P+TIIY+++   
Sbjct: 492 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASA 551

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
              +G +    ++   +    +  D + Y ++I   C  G  E A      M   GC  N
Sbjct: 552 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 611

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGG 265
              Y+ L+ G+   G ++ A E+L E+  +G 
Sbjct: 612 ESTYTILIRGLASEGFVKEAQEMLTELCSKGA 643


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 172/342 (50%), Gaps = 20/342 (5%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           V+EA   +G  +      ++ N +C++    +E + +LRK+P F    D + YN V++  
Sbjct: 173 VLEALHAKGSTLDTGNCNLVINAICDQG-CVDEGLEMLRKLPLFGCEADIVSYNAVLKGL 231

Query: 175 CEK---GD-------MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           C     GD       M+   E +  M      PDI  Y ++I G C  G  E A  +   
Sbjct: 232 CAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSR 291

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M  +G   N+V Y+ +L GIC     E+A ELL EM ++  +C  + VT+  ++  FC  
Sbjct: 292 MPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQK--NCPLDDVTFNILVDFFCQN 349

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G++   + +L++M   GC P+ +T +T+I GFC EG +DEA  L+  + + G   +   Y
Sbjct: 350 GLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISY 409

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + ++  L  T+R  +AE+L S+M+  G  P+ +  + +I  LC  G V +   L + +  
Sbjct: 410 TIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQM-- 467

Query: 405 IGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
              ++  + D+  +S ++ GL +   + EA +L   M+ K I
Sbjct: 468 --LVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGI 507



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 169/324 (52%), Gaps = 10/324 (3%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKAR--LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
           + GC   ++M   I + +C++    +ANE   +L +MP + L+P+ + YN V++  C   
Sbjct: 259 QHGCTPDIRMYATIIDGICKEGHHEVANE---ILSRMPSYGLKPNVVCYNTVLKGICSAD 315

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
               A+EL+  M   +   D +T+  ++  FC  G ++    L + M  HGC  +++ Y+
Sbjct: 316 RWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYT 375

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            +++G C+ G ++ A+ LL  M   G  C PN ++YT V++  C      +A  ++ RM 
Sbjct: 376 TVINGFCKEGLIDEAVMLLKNMPSCG--CKPNTISYTIVLKGLCSTERWVDAEELMSRMI 433

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             GC PN VT +T+I   C +G +++A +L+ +++  G       YS+++  L +  + +
Sbjct: 434 QQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTE 493

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
           EA +L + M+  G+ P+ +  S M   L   G++ +   ++++I+     S  D+ +++ 
Sbjct: 494 EALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRS--DAVLYNA 551

Query: 419 LLLGLCRKNHSVEAAKLARFMLKK 442
           ++  LC++  +  A     +M+  
Sbjct: 552 VISSLCKRRETDLAIDFLAYMVSN 575



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 136/267 (50%), Gaps = 8/267 (2%)

Query: 134 VIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V FN+     C+   L +  + +L +M E    PD I Y  VI  FC++G +  A  L+K
Sbjct: 337 VTFNILVDFFCQNG-LVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 395

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P+ I+Y  ++KG C+  R  DA  L   M + GC  N V ++ +++ +C+ G
Sbjct: 396 NMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKG 455

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E+A+ELL +M   G  C+P++++Y++VI      G  +EAL +L+ M   G  PN +T
Sbjct: 456 LVEQAIELLKQMLVNG--CNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVIT 513

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S++      EG +D+  Q+ D +      S    Y++++  L + +    A    + M+
Sbjct: 514 YSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMV 573

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEG 395
           ++G  P+    + +I+ L   G + E 
Sbjct: 574 SNGCMPNESTYTALIKGLASEGLLCEA 600



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 138/283 (48%), Gaps = 13/283 (4%)

Query: 96  MYNRACEMSRIKQNPSI-----------IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL 144
           MY + C +  +  N  +           +I+++E   E GC+  V     + N   K  L
Sbjct: 327 MYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGL 386

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            +EA+ +L+ MP    +P+TI Y  V++  C     + A+ELM  M      P+ +T+ +
Sbjct: 387 IDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNT 446

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I   C  G +E A  L K M  +GC  +L++YS ++DG+ + G  E ALELL  M  +G
Sbjct: 447 IINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKG 506

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
              +PNV+TY+S+      +G + + + + D ++      + V  + +I   C     D 
Sbjct: 507 --ITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDL 564

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           A   +  +V+ G + +   Y++L+  L     L EA+ L S++
Sbjct: 565 AIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSEL 607



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 157/339 (46%), Gaps = 15/339 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+  LC + R+A +A+ VL +M      P   +Y+ +I   C  G   +A  +++ +   
Sbjct: 122 VVRGLCGRGRIA-DALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAK 180

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC---RLGSM 250
               D      +I   C+ G +++   + + +   GC A++V+Y+A+L G+C   R G +
Sbjct: 181 GSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDV 240

Query: 251 ERAL-------ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           E  +       E L +M + G  C+P++  Y ++I   C +G  + A  IL RM + G  
Sbjct: 241 EELMDEMVKVHEALSQMAQHG--CTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLK 298

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN V  +T++KG C     ++A +L+ ++           ++ LV    +   +    +L
Sbjct: 299 PNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIEL 358

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
             +ML  G  PD +  + +I   C  G + E   L +++   G   +  S  ++++L GL
Sbjct: 359 LEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTIS--YTIVLKGL 416

Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           C     V+A +L   M+++         + I+  L K G
Sbjct: 417 CSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKG 455



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 148/355 (41%), Gaps = 52/355 (14%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           S ++  +I +LC   R A+     +R +         + YN ++  +C  G + AA  L 
Sbjct: 52  SGRLSALIRSLCVAGRTAD----AVRALDAAGNAAGVVDYNAMVAGYCRVGQVEAARRLA 107

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
                + + P+  TY  +++G C  GR+ DA  +   M    C      Y  +++  CR 
Sbjct: 108 AA---VPVPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRS 164

Query: 248 GSMERALELLGEMEKEGGD---------------------------------CSPNVVTY 274
           G    AL +L  +  +G                                   C  ++V+Y
Sbjct: 165 GGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSY 224

Query: 275 TSVIQIFCGKGMMKEALGILDRM----EAL------GCAPNRVTISTLIKGFCVEGNLDE 324
            +V++  C      +   ++D M    EAL      GC P+    +T+I G C EG+ + 
Sbjct: 225 NAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEV 284

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A +++ ++ + G   +  CY++++  +    R ++AE+L ++M       D +  ++++ 
Sbjct: 285 ANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVD 344

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
             C  G V     L E + + G +  V +  ++ ++ G C++    EA  L + M
Sbjct: 345 FFCQNGLVDRVIELLEQMLEHGCMPDVIT--YTTVINGFCKEGLIDEAVMLLKNM 397



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 131/282 (46%), Gaps = 26/282 (9%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++I+  C AGR  DA    + +   G AA +V Y+A++ G CR+G +E A  L   +   
Sbjct: 57  ALIRSLCVAGRTADA---VRALDAAGNAAGVVDYNAMVAGYCRVGQVEAARRLAAAVP-- 111

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
                PN  TY  V++  CG+G + +AL +LD M +  C P       +I+  C  G   
Sbjct: 112 ---VPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYS 168

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A ++++ + A GS    G  + ++  +     + E  ++  K+   G + D ++ + ++
Sbjct: 169 SALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVL 228

Query: 384 RELCLG---GQVLEGFCLYEDIEKIG-FLSSV-------DSDIHSVLLLGLCRKNHSVEA 432
           + LC     G V E   L +++ K+   LS +       D  +++ ++ G+C++ H   A
Sbjct: 229 KGLCAAKRWGDVEE---LMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVA 285

Query: 433 ----AKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
               +++  + LK  +      +  I    +    EEL+T +
Sbjct: 286 NEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEM 327


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 204/411 (49%), Gaps = 20/411 (4%)

Query: 73  QSQMGIRFFIWAALQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVS 128
           + ++ + FF WA  +S   H+ F  N A    C ++R ++  ++  + +       C+ +
Sbjct: 3   KPELVLLFFDWA--RSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARI----CMPN 56

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
                ++      A   + A+ +L +M       + +++  +++  C+ G ++ A E  +
Sbjct: 57  KFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFR 116

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M   D  PD++TY +++   C AG+ ++A G+ + M   GCA + V +S L+DG+C+ G
Sbjct: 117 AMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFG 175

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAPNRV 307
           S E+A  +L ++ + G   S     + ++IQ  C K   ++ A  +L  + A G  P  +
Sbjct: 176 SEEQAFRVLEDVIQRGMGNSD--AAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVL 233

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
             + +I GFC   +LD AY+L++ ++  G V +   ++ L+  L +  R+ EA++L  KM
Sbjct: 234 MFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKM 293

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           +  G  P+ +  S +I  LC  GQV + + L++ +E+     +V +  H++L+ GLC+  
Sbjct: 294 VMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVT--HNILIDGLCKAK 351

Query: 428 HSVEAAKLARFMLKK----RIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
              EA +L   M +      I      +D + +  +     +L   +P+ G
Sbjct: 352 RIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESG 402



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 5/303 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K      A  VL  +      P  +++N VI  FC+  D+ +A +L++ M   
Sbjct: 202 IIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEK 261

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P++ T+  +I G C A R+ +A  L + M   GC+ N+V YS +++G+C+ G ++ A
Sbjct: 262 GCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDA 321

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL   ME+   +C PNVVT+  +I   C    ++EA  +  RM   GCAP+ +T ++LI
Sbjct: 322 YELFQLMERR--NCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLI 379

Query: 314 KGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
            G C    +DEA+QL   +   G S ++   YS+L        R+ +A ++FS ++  G 
Sbjct: 380 DGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGF 439

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD    + +I E C   + +E   L E++   GF   V++   S +L GL   NH+  A
Sbjct: 440 SPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNT--LSAVLGGLFEGNHTERA 497

Query: 433 AKL 435
            +L
Sbjct: 498 IQL 500



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 170/344 (49%), Gaps = 8/344 (2%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +G   +V M  ++ N   KA+  + A  +L  M E    P+   +  +I   C+   +  
Sbjct: 226 KGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGE 285

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +L++ M +    P+++TY ++I G C  G+++DA  LF++M+R  C  N+V ++ L+D
Sbjct: 286 AQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILID 345

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C+   +E A +L   M + G  C+P+++TY S+I   C    + EA  +   +   G 
Sbjct: 346 GLCKAKRIEEARQLYHRMRETG--CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 403

Query: 303 -APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
            A N VT STL  G+   G + +A ++   +V  G       Y+SL++E  +T R  E  
Sbjct: 404 SAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVV 463

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +L  +M + G  P     S ++  L  G        L++ +   G   + D+ I+++++ 
Sbjct: 464 ELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARG--CTDDALIYNLVVE 521

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGP---YVDKIVEHLKKSG 462
           G+ R +   +A  +   ++ KR     P    VD +VE L + G
Sbjct: 522 GMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVG 565



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 179/408 (43%), Gaps = 51/408 (12%)

Query: 115 DVVEAYK------EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           D+  AYK      E+GCV +V    ++     KA    EA  +L KM      P+ + Y+
Sbjct: 247 DLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYS 306

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            VI   C++G +  A EL + M   +  P+++T+  +I G C A R+E+A  L+  M+  
Sbjct: 307 TVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRET 366

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           GCA +++ Y++L+DG+C+   ++ A +L   +  E G  + N VTY+++   +   G M 
Sbjct: 367 GCAPDIITYNSLIDGLCKSFQVDEAFQLFQTI-PESGVSAANAVTYSTLFHGYAALGRMA 425

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFC------------------------------- 317
           +A  I   +   G +P+  T ++LI  +C                               
Sbjct: 426 DACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVL 485

Query: 318 ---VEGNLDE-AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--- 370
               EGN  E A QL D + A G       Y+ +V  + R  +  +A  +  +++     
Sbjct: 486 GGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDR 545

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
              P   A   ++  LC  G+  +   L   + + GF ++V S  ++ LL GL R     
Sbjct: 546 KFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSS--YNRLLSGLSRLQRWD 603

Query: 431 EAAKLARFMLKKRIWLQGPYVDKIVEHL----KKSGDEELITNLPKIG 474
           EA ++   M+      +   V+ ++  L    K     EL+  + K+G
Sbjct: 604 EATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLG 651



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 17/183 (9%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLID---------LYPDIITYVSMIKGFCNAG 213
           D +IYN V+        M  A +  K + +++           P      ++++  C  G
Sbjct: 512 DALIYNLVVE------GMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVG 565

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           + +DA  L   M   G AA + +Y+ LL G+ RL   + A ++   M   G   +P + T
Sbjct: 566 KTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGP--APEIST 623

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
              VI   C    + +A  ++ RM  LGC P+  T +TLI G+C  G  D A +L++++ 
Sbjct: 624 VNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMT 683

Query: 334 AGG 336
             G
Sbjct: 684 EAG 686



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 105/250 (42%), Gaps = 36/250 (14%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD   Y ++I  +C+    +   EL++ M      P + T  +++ G       E A  L
Sbjct: 441 PDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQL 500

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE-MEKEGGDCSPNVVTYTSVIQI 280
           F  M   GC  + + Y+ +++G+ R    ++AL +L + ++K     +P+     ++++ 
Sbjct: 501 FDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVES 560

Query: 281 FCGKGMMKEALGILDRM--------------------------------EAL---GCAPN 305
            C  G   +A  +L +M                                EA+   G AP 
Sbjct: 561 LCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPE 620

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
             T++ +I   C    +D+AY+L+ ++   G        ++L+    ++ R   A KL  
Sbjct: 621 ISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLE 680

Query: 366 KMLASGVKPD 375
           +M  +G++P+
Sbjct: 681 EMTEAGLEPN 690



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 84/198 (42%), Gaps = 5/198 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM---PEFDLRPDTIIYNNV 170
           I + ++    GC     +  ++     +A   ++A+ VL ++    +    P +   + +
Sbjct: 498 IQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDAL 557

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +   C+ G    A +L+  M        + +Y  ++ G     R ++A  +F+ M   G 
Sbjct: 558 VESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGP 617

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
           A  +   + ++  +C    ++ A EL+  M K G  C P++ T  ++I  +C  G    A
Sbjct: 618 APEISTVNVVISWLCSAAKVDDAYELVQRMSKLG--CCPDIETCNTLIGGYCKSGRADLA 675

Query: 291 LGILDRMEALGCAPNRVT 308
             +L+ M   G  PN  T
Sbjct: 676 RKLLEEMTEAGLEPNDTT 693



 Score = 41.6 bits (96), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 49/119 (41%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G   +V     + +   + +  +EA  V   M      P+    N VI   C    + 
Sbjct: 579 ERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVD 638

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
            A EL++ M  +   PDI T  ++I G+C +GR + A  L + M   G   N   +  L
Sbjct: 639 DAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 697


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 158/292 (54%), Gaps = 4/292 (1%)

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
           M +L +M +    PD I YN V+   C++G +  A E ++ +      P+ ++Y  ++KG
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
              A R EDA  L + M   GC  N+V ++ L+  +CR G +E A+E+L ++ K G  C+
Sbjct: 61  LFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYG--CT 118

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           PN ++Y  ++  FC +  M +A+  ++ M + GC P+ V+ +TL+   C  G +D A  L
Sbjct: 119 PNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDL 178

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
           + ++   G       Y++++  L +  + KEA +L  +M++ G++PD +  + +   LC 
Sbjct: 179 LHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCR 238

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
             ++ E    +  ++ +G   +V   +++ +LLGLC++  +  A  L  +M+
Sbjct: 239 EDKIEEAIRTFCKVQDMGIRPTV--VLYNAILLGLCKRRETHNAIDLFSYMI 288



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 155/316 (49%), Gaps = 39/316 (12%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR-- 172
           +++  +++GC   +    V+ N +C++ R+ ++AM  L  +P +   P+T+ YN V++  
Sbjct: 3   LLDEMRDKGCAPDIITYNVVLNGICQEGRV-DDAMEFLENLPSYGGEPNTVSYNIVLKGL 61

Query: 173 ---------------------------------LFCEKGDMIAADELMKGMGLIDLYPDI 199
                                              C +G +  A E+++ +      P+ 
Sbjct: 62  FTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNS 121

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           ++Y  ++  FC   +++ A    ++M   GC  ++V+Y+ LL  +CR G ++ A++LL +
Sbjct: 122 LSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQ 181

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           ++ +G  CSP +++Y +VI      G  KEAL +LD M + G  P+ +T +T+  G C E
Sbjct: 182 LKGKG--CSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCRE 239

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
             ++EA +   KV   G   +   Y+++++ L + +    A  LFS M+++G  P+    
Sbjct: 240 DKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTY 299

Query: 380 SVMIRELCLGGQVLEG 395
           ++++  L   G V E 
Sbjct: 300 TILVEGLAYEGLVKEA 315



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 133/257 (51%), Gaps = 2/257 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E    +GC  +V    ++ +   +  L   AM VL ++P++   P+++ YN ++  FC
Sbjct: 73  LMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFC 132

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++  M  A   ++ M     YPDI++Y +++   C  G ++ A  L   +K  GC+  L+
Sbjct: 133 KQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLI 192

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           +Y+ ++DG+ + G  + ALELL EM  +G    P+++TYT++    C +  ++EA+    
Sbjct: 193 SYNTVIDGLTKAGKTKEALELLDEMISKG--LQPDIITYTTIASGLCREDKIEEAIRTFC 250

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +++ +G  P  V  + ++ G C       A  L   +++ G + +   Y+ LV  L    
Sbjct: 251 KVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEG 310

Query: 356 RLKEAEKLFSKMLASGV 372
            +KEA  L  ++ + GV
Sbjct: 311 LVKEARDLLGQLCSRGV 327



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
            + ID++   K +GC   +     + +   KA    EA+ +L +M    L+PD I Y  +
Sbjct: 173 DVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTI 232

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
               C +  +  A      +  + + P ++ Y +++ G C      +A  LF  M  +GC
Sbjct: 233 ASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGC 292

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
             N   Y+ L++G+   G ++ A +LLG++   G
Sbjct: 293 MPNESTYTILVEGLAYEGLVKEARDLLGQLCSRG 326


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 144/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G+  SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYKPSV 416



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++  + +++ D +    ++G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKM-DDANVLFDEM---LDKGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 116/247 (46%), Gaps = 8/247 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ K H           +L+ + +L    +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  F  +G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 121 WGFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+L+E ++L + + A G       YS L+  L +  ++ +A  LF +ML  G+ P+
Sbjct: 181 YIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +       S D   ++ L+ GLC+K    +A  L
Sbjct: 241 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL--SPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 436 ARFMLKK 442
              M+ K
Sbjct: 299 IDEMIMK 305


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 165/320 (51%), Gaps = 6/320 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ +   M    + PD + +N ++   C++G ++ A  ++  M   DL PD++TY S++
Sbjct: 247 EAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLM 306

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C    +     +F  M R GC  ++++Y+ L++G C++  M++A+ L  EM ++G  
Sbjct: 307 DGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQG-- 364

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+ VTY ++I   C  G +++A+ +   M   G  P+ VT   L    C    L EA 
Sbjct: 365 LIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAM 424

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVE-LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            L+ KV+ G ++       S+V++ + R   L+ A  LFSK+ + G+ PD    ++MI  
Sbjct: 425 VLL-KVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMING 483

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           LC  G + E   L+ ++++ G   S ++  ++++  G  R N ++ A +L + ML +   
Sbjct: 484 LCQQGLLAEASKLFGEMDENG--CSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFS 541

Query: 446 LQGPYVDKIVEHLKKSGDEE 465
           +       +VE L   G ++
Sbjct: 542 IDVSTTTLLVEMLSDDGLDQ 561



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 154/303 (50%), Gaps = 10/303 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+     + A+  LR M + + RP  ++Y+ +I   C+   +  A  L   M   
Sbjct: 165 LINGLCKVGN-TSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAK 223

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+  TY S+I G C  G  ++A  LF  M       + + ++ L+D +C+ G + +A
Sbjct: 224 GISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKA 283

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             ++  M +   D  P+VVTY S++   C +  M + + + D M   GC P+ ++ +TLI
Sbjct: 284 HYVVDVMIQS--DLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLI 341

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C    +D+A  L +++   G +     Y++L+  L    RL++A  LF +M+  G  
Sbjct: 342 NGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQI 401

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH--SVLLLGLCRKNHSVE 431
           PD +   ++   LC   ++ E   L + IE     +++D DIH  S+++ G+CR    +E
Sbjct: 402 PDLVTYRILFDYLCKNHRLAEAMVLLKVIEG----TNLDPDIHIYSIVMDGMCRAG-ELE 456

Query: 432 AAK 434
           AA+
Sbjct: 457 AAR 459



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 138/284 (48%), Gaps = 3/284 (1%)

Query: 79  RFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL 138
            + +   +QS  +     YN   +   ++      ++V +    +GCV SV     + N 
Sbjct: 284 HYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLING 343

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
             K ++ ++AM +  +M +  L PDT+ YN +I   C  G +  A  L   M +    PD
Sbjct: 344 YCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPD 403

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++TY  +    C   RL +A  L KV++      ++  YS ++DG+CR G +E A +L  
Sbjct: 404 LVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFS 463

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           ++  +G    P+V TYT +I   C +G++ EA  +   M+  GC+PN  T + + +GF  
Sbjct: 464 KLSSKG--LHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLR 521

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
                 A QL  ++++ G  S     ++L+VE++    L ++ K
Sbjct: 522 NNETLRAIQLFQEMLSRG-FSIDVSTTTLLVEMLSDDGLDQSVK 564



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 139/273 (50%), Gaps = 4/273 (1%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           ++M  F +  +T   N +I  FC    +  A  ++  +  +   P   T+ ++I+G C  
Sbjct: 78  KQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVE 137

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G++ +A  LF  M   G   +++ Y  L++G+C++G+   A+  L  ME+   +C P VV
Sbjct: 138 GKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQR--NCRPTVV 195

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
            Y+++I   C    + EAL +   M A G +PN  T S+LI G C+ G+  EA +L   +
Sbjct: 196 VYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAM 255

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +    +     +++LV  L +   + +A  +   M+ S +KPD +  + ++   CL  ++
Sbjct: 256 IHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEM 315

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            +   +++ + + G + SV S  ++ L+ G C+
Sbjct: 316 GKTVNVFDTMVRKGCVPSVIS--YTTLINGYCK 346



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 112/252 (44%), Gaps = 4/252 (1%)

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N   ++DA  LF  M R     ++V +S LL  I R+      L L  +M+  G     N
Sbjct: 31  NVNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFG--IPHN 88

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
             T   +I  FC    +  A  +L  +  LG  P+  T +TLI+G CVEG + EA QL D
Sbjct: 89  TYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFD 148

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           K+   G       Y +L+  L +      A +    M     +P  +  S +I  LC   
Sbjct: 149 KMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDR 208

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
           Q+ E   L+ D+   G   S ++  +S L+ GLC   H  EA +L   M+ ++I      
Sbjct: 209 QLTEALSLFSDMLAKGI--SPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 266

Query: 451 VDKIVEHLKKSG 462
            + +V+ L K G
Sbjct: 267 FNTLVDALCKEG 278



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 110/250 (44%), Gaps = 2/250 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+ +  +M      P  + ++ ++              L K M    +  +  T   +
Sbjct: 36  DDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNIL 95

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC+  RL  A  +   + + G   +   ++ L+ G+C  G +  AL+L  +M  EG 
Sbjct: 96  INSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEG- 154

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+V+TY ++I   C  G    A+  L  ME   C P  V  ST+I   C +  L EA
Sbjct: 155 -FQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEA 213

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L   ++A G   +   YSSL+  L      KEA +LF  M+   + PD L  + ++  
Sbjct: 214 LSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDA 273

Query: 386 LCLGGQVLEG 395
           LC  G V++ 
Sbjct: 274 LCKEGMVVKA 283


>gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 632

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 152/321 (47%), Gaps = 4/321 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V +V     I N   K +   +   +  +M    +  +   +N +  + C  GD+   
Sbjct: 216 GFVPNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKI 275

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           +  ++ M      PD++TY ++I  +   GRLEDA  L+K+M R G   +LV+Y++L+ G
Sbjct: 276 NGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRG 335

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +CRLG +  A +L   M   G D  P+VV Y ++I  +C  GM++EA  +L  M  +G  
Sbjct: 336 LCRLGRVREAHQLFHRMIDRGMD--PDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIH 393

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+  T   L++G+  EG L  A  L+ ++   G   +   Y  L++ L R  R   A+ L
Sbjct: 394 PDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSL 453

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
             ++L    +PD    + +I   C    V E   L   +E I       +D +  L+  +
Sbjct: 454 LERILEDSFQPDSDIYNKLIESFCRSNNVSEALLL--KLEMINRNYKPTTDTYKSLIHCM 511

Query: 424 CRKNHSVEAAKLARFMLKKRI 444
           C  N SV+   L   M++  +
Sbjct: 512 CEINRSVDGEGLMVEMVESEV 532



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 152/315 (48%), Gaps = 8/315 (2%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADEL-MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           + +I+  +I+ +  K D+I       K M  +   P++I    ++ G            L
Sbjct: 185 NPVIFEMLIKAYV-KLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWEL 243

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           ++ M R G  +N   ++ L   +CR G + +    L +ME+EG D  P+VVTY ++I  +
Sbjct: 244 YEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFD--PDVVTYNTLIDSY 301

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
             +G +++A  +   M   G  P+ V+ ++L++G C  G + EA+QL  +++  G     
Sbjct: 302 VRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDV 361

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++L+    +   L+EA  L  +M+  G+ PD   C +++      G+++    L  +
Sbjct: 362 VLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVE 421

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
           I+K+G   +V  DI+  L++ LCR++    A  L   +L+          +K++E   +S
Sbjct: 422 IQKLGV--TVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRS 479

Query: 462 GD--EELITNLPKIG 474
            +  E L+  L  I 
Sbjct: 480 NNVSEALLLKLEMIN 494



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 120/275 (43%), Gaps = 2/275 (0%)

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           +E  +EEG    V     + +   +     +A ++ + M    + PD + Y +++R  C 
Sbjct: 279 LEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCR 338

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
            G +  A +L   M    + PD++ Y ++I  +C  G L++A  L   M   G   +   
Sbjct: 339 LGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFT 398

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
              L++G  R G +  AL L+ E++K G   + ++  Y  +I   C +     A  +L+R
Sbjct: 399 CRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKY--LIISLCREDRPFAAKSLLER 456

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           +      P+    + LI+ FC   N+ EA  L  +++      +   Y SL+  +    R
Sbjct: 457 ILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINR 516

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
             + E L  +M+ S V PD   C  ++   C  G 
Sbjct: 517 SVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGN 551



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 111/280 (39%), Gaps = 34/280 (12%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R+  EA  +  +M +  + PD ++YN +I  +C+ G +  A  L+  M  I ++P
Sbjct: 336 LCRLGRV-REAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHP 394

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS-------M 250
           D  T   +++G+   GRL  A  L   +++ G       Y  L+  +CR          +
Sbjct: 395 DSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLL 454

Query: 251 ERALE--------------------------LLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           ER LE                          LL ++E    +  P   TY S+I   C  
Sbjct: 455 ERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEI 514

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
               +  G++  M      P+      L+ G+C EGN D+A  L+              +
Sbjct: 515 NRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAKDFQFFDSESF 574

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           +SLV          +  +L  +ML +G  P+ L C  +I 
Sbjct: 575 NSLVKVYRDVGNETKLMELQDRMLKAGFLPNSLTCRYIIH 614



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 4/203 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++V   ++ G  V+  + K +I +LC + R    A  +L ++ E   +PD+ IYN +I 
Sbjct: 416 LNLVVEIQKLGVTVAHDIYKYLIISLCREDR-PFAAKSLLERILEDSFQPDSDIYNKLIE 474

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            FC   ++  A  L   M   +  P   TY S+I   C   R  D  GL   M       
Sbjct: 475 SFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIP 534

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +     AL++G C+ G+ ++A  LL    K+         ++ S+++++   G   + + 
Sbjct: 535 DHEICRALVNGYCKEGNADKAESLLVSFAKDFQFFDSE--SFNSLVKVYRDVGNETKLME 592

Query: 293 ILDRMEALGCAPNRVTISTLIKG 315
           + DRM   G  PN +T   +I G
Sbjct: 593 LQDRMLKAGFLPNSLTCRYIIHG 615


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 148/275 (53%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+   ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML  G+KPD    +++I E C
Sbjct: 339 HRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G  L +++++ G + SV +  ++VL+ G
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSVVT--YNVLMNG 431



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 128/274 (46%), Gaps = 15/274 (5%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+Y+ L++G  RLG ++   
Sbjct: 138 YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 197

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M +A  + D M   G  PN V  +TLI 
Sbjct: 198 RLKSAMLASG--VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLID 255

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++   +     Y++L+  L +   LK+   L  +M   G+KP
Sbjct: 256 GHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKP 315

Query: 375 DGLACSVMIRELCLGGQVLEGF-----CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           D +  + +I   C  G +   F      + E+I        +D   ++ L+ GLC++  S
Sbjct: 316 DKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIR-------LDEVAYTALISGLCQEGRS 368

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V+A K+ R ML   +         I+    K GD
Sbjct: 369 VDAEKMLREMLNVGLKPDARTYTMIINEFCKKGD 402



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 3/177 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C+  R+ + AM + ++M    L PD I YN +I   C+KGD+     L+  M +  L PD
Sbjct: 258 CKNGRV-DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPD 316

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            ITY ++I G C  G L+ A    K M +     + VAY+AL+ G+C+ G    A ++L 
Sbjct: 317 KITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLR 376

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           EM   G    P+  TYT +I  FC KG + +   +L  M+  G  P+ VT + L+ G
Sbjct: 377 EMLNVG--LKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 112/215 (52%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M    L P+ +I+  +I   C+ G +  A E+ K M   
Sbjct: 218 LINGLCKESKM-DDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L+    L   M   G   + + Y+ L+DG C+ G ++ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTA 336

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E   +M +E  +   + V YT++I   C +G   +A  +L  M  +G  P+  T + +I
Sbjct: 337 FEHRKQMIQE--NIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMII 394

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G V S   Y+ L+
Sbjct: 395 NEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 146/280 (52%), Gaps = 4/280 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A  V   MP+   + + + Y N+I   CE G +  A +L   M   +  P + TY  +
Sbjct: 246 DNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVL 305

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I     +GR  +A  LF  MK  GC  N+  Y+ L+DG+C+   M+ A ++L EM ++G 
Sbjct: 306 IYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG- 364

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+VVTY ++I  +C +GM+ +A  ILD ME+  C PN  T + LI G C +  + +A
Sbjct: 365 -LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKA 423

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L++K++      S   Y+SL+    +   L+ A +L S M  +G+ PD    SV I  
Sbjct: 424 MALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDT 483

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           LC  G+V E   L++ ++  G     +  I++ L+ G C+
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGV--KANEVIYTALIDGYCK 521



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 190/412 (46%), Gaps = 31/412 (7%)

Query: 70  FPSQSQMGIRFFIWAALQSSYRHSSFMYN-------RA--------CEMSRIKQNPSI-- 112
           F    Q  + FF W AL+  ++H+   Y+       RA          +S IK   SI  
Sbjct: 77  FNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIED 136

Query: 113 IIDVVEAYK------EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
           ++ V+E ++      E     +++    I     K  L +E   V  ++    + P+   
Sbjct: 137 VLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYT 196

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           +N ++  +C+ G+++ A+     +    L+PD  TY S+I G C    +++A  +F +M 
Sbjct: 197 FNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMP 256

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           + GC  N V+Y+ L+ G+C  G +  AL+L  +M ++  +C P V TYT +I    G G 
Sbjct: 257 QKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED--NCCPTVRTYTVLIYALSGSGR 314

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
             EAL + + M+  GC PN  T + LI G C E  +DEA +++ ++   G + S   Y++
Sbjct: 315 KVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNA 374

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+    +   + +A ++   M ++   P+    + +I  LC   +V +   L   + +  
Sbjct: 375 LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK 434

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM----LKKRIWLQGPYVDKI 454
              S+ +  ++ L+ G C+ N    A +L   M    L    W    ++D +
Sbjct: 435 LSPSLIT--YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 131/251 (52%), Gaps = 3/251 (1%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           ++I  LC+K R  ++AM +L KM E  L P  I YN++I   C+  D+ +A  L+  M  
Sbjct: 409 ELICGLCKK-RKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNE 467

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             L PD  TY   I   C  GR+E+A  LF  +K  G  AN V Y+AL+DG C++G ++ 
Sbjct: 468 NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDV 527

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A  LL  M  +   C PN  TY  +I+  C +  MKEA  ++ +M  +G  P  VT + L
Sbjct: 528 AYSLLERMLNDA--CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTIL 585

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I     +G  D A ++ + +V+ G       Y++ +        L+E + + +KM   G+
Sbjct: 586 IGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGI 645

Query: 373 KPDGLACSVMI 383
            PD +  +V+I
Sbjct: 646 LPDLVTYTVLI 656



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 157/346 (45%), Gaps = 41/346 (11%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           CE  RI +   +  D+ E    + C  +V+   V+      +    EA+ +  +M E   
Sbjct: 275 CEAGRINEALKLFADMTE----DNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGC 330

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+   Y  +I   C++  M  A +++  M    L P ++TY ++I G+C  G ++DA  
Sbjct: 331 EPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFE 390

Query: 221 LFKVMKRHGCAAN-----------------------------------LVAYSALLDGIC 245
           +  +M+ + C  N                                   L+ Y++L+ G C
Sbjct: 391 ILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQC 450

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           ++  +E A  LL  M + G    P+  TY+  I   C +G ++EA  + D ++A G   N
Sbjct: 451 KVNDLESAYRLLSLMNENG--LVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKAN 508

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  + LI G+C  G +D AY L+++++    + +   Y+ L+  L + K++KEA  L +
Sbjct: 509 EVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVA 568

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           KML  GVKP  +  +++I E+   G       ++  +  +G+   V
Sbjct: 569 KMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDV 614



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 23/327 (7%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ ++  EA  ++ KM    ++P  + Y  +I    + G    A ++   M  +
Sbjct: 550 LIEGLCKEKKM-KEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSL 608

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ TY + +  + + G LE+   +   M   G   +LV Y+ L+DG  RLG   RA
Sbjct: 609 GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRA 668

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE------------------ALGILD 295
            + L  M   G  C P++   + +I+    +  MKE                  AL + +
Sbjct: 669 FDFLKCMVDTG--CKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFE 726

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +M   GC  +      LI GFC +  L+EA  L+  +   G   S   Y+SL+    +  
Sbjct: 727 KMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLG 786

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
              EA +L   M+ +G+ P   +  +++  L + G   +   ++  +   G+  + D   
Sbjct: 787 VYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGY--NYDEVA 844

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKK 442
             VL+ GL +++   E ++L   M +K
Sbjct: 845 WKVLIDGLLKRDLVDECSELIDIMEEK 871



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/361 (20%), Positives = 140/361 (38%), Gaps = 60/361 (16%)

Query: 79  RFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL 138
           R    A L +SY ++  +    C+  ++K+  S++  ++      G   +V    ++   
Sbjct: 534 RMLNDACLPNSYTYNVLI-EGLCKEKKMKEASSLVAKMLTM----GVKPTVVTYTILIGE 588

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
             K    + A+ V   M     +PD   Y   +  +  +G +   D+++  M    + PD
Sbjct: 589 MLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD 648

Query: 199 IITYVSMIKGFC------------------------------------------------ 210
           ++TY  +I G+                                                 
Sbjct: 649 LVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG 708

Query: 211 -----NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
                N    E A  LF+ M  HGC  ++  Y AL+ G C+   +E A  L+  M++ G 
Sbjct: 709 IDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERG- 767

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             SP+   Y S++   C  G+  EA+ ++D M   G  P   +   L+ G  +EG+ ++A
Sbjct: 768 -MSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKA 826

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             +   +++ G       +  L+  L++   + E  +L   M   G +P+ L  S++I  
Sbjct: 827 KAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEG 886

Query: 386 L 386
           L
Sbjct: 887 L 887



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 2/157 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+  Y ++I GFC   RLE+A GL   MK  G + +   Y++LLD  C+LG    A+ L+
Sbjct: 736 DVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLV 795

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M + G    P + +Y  ++     +G  ++A  +   + + G   + V    LI G  
Sbjct: 796 DAMVENG--LLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLL 853

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
               +DE  +LID +   G   +   YS L+  L RT
Sbjct: 854 KRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGLERT 890


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 213/474 (44%), Gaps = 74/474 (15%)

Query: 63  IEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRA-CEMSRIKQNPSIIIDVVEAYK 121
           I ++  C   ++      F+    QS  R   F Y+     +SR+    +++ D      
Sbjct: 149 IHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVM-DRYHRML 207

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
            EG   ++ +   + N LC+   +A +A  +++K+ E ++ PDT  Y ++I   C K D+
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVA-DAETIMKKVFESEMSPDTFTYTSMILGHCRKHDL 266

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL------------------------- 215
            +A ++   M      P+ +TY ++I G C++GR+                         
Sbjct: 267 DSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP 326

Query: 216 ----------EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG- 264
                     EDA  LF  MK  GC  N+  Y+AL+ G+C  G ++ A+ L   M ++G 
Sbjct: 327 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGV 386

Query: 265 --------------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALG 292
                                             CSPN+VTY  +I+ +C  G  K+A+ 
Sbjct: 387 FPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML 446

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +++ M   G + N VT +T+IKG+C  GN   A +++D +  GG       Y+ L+    
Sbjct: 447 VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC 506

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  +++ A  LF++M+  G+ P+ +  + +I   C   ++     L E +++ G   +V 
Sbjct: 507 KISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQ 566

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
           +  ++VL+ GL ++N+   A +L + M+++ I+        +++ L K+G   L
Sbjct: 567 T--YNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL 618



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 143/297 (48%), Gaps = 2/297 (0%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + I +      +G   +      + N+  + R    A  VL  M      P+ + YN +I
Sbjct: 373 VAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           + +C  GD   A  +M  M       +++TY ++IKG+C++G    A  +  +M+  GC 
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            +  +Y+ L+ G C++  ME A  L  EM  +G    PN VTYT++I  +C    +  A 
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDG--LCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +L+ M+  GC PN  T + LI G   + N   A +L   ++  G   +   Y++++  L
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
            +      A ++F+KM+  G  P+ L  S +IR L   G+V E   L+ ++E+ G +
Sbjct: 611 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI 667



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 153/378 (40%), Gaps = 57/378 (15%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  K  GC  +V+   V+ +   K    + A  + + M E  + P+ + Y  +I   C
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLC 611

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G    A E+   M      P+++TY S+I+     G++E+A  LF  ++RHG   + +
Sbjct: 612 KNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEI 671

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y  +++     G +E A   LG M K G  C P + TY  +I     KG+  E L    
Sbjct: 672 TYVKMIEAYIMSGKVEHAFNFLGRMIKAG--CQPTLWTYGVLI-----KGLKNEYLLADQ 724

Query: 296 RMEAL-GCAPN-----------RVTI-----------------STLIKGFCVEGNLDEAY 326
           R+ AL    PN            V++                 + L+      G   EA 
Sbjct: 725 RLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEAN 784

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+  +++ G       Y+SL+  L+R + +  A  +F  M   G +        +I  L
Sbjct: 785 ELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICAL 844

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN---------HSVEAAK--- 434
           C   +  E    +E++    +  + D  + +VL+ GL R           H +E  +   
Sbjct: 845 CQLHRRKEARITFENMLMRTW--NPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMP 902

Query: 435 -------LARFMLKKRIW 445
                  LAR   KKR W
Sbjct: 903 SFHIYTILAREASKKRSW 920


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 152/298 (51%), Gaps = 9/298 (3%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           S + +  C+ S  KQ     + +++  + +GC   +    V+ N +C +  +  EA+ VL
Sbjct: 199 SILLDATCKESGYKQ----AVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVG-EALKVL 253

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
             +P +  +PD + Y  V++  C       AD+L+  M   D  PD +T+ ++I   C  
Sbjct: 254 NSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQK 313

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE--GGDCSPN 270
           G +  A  +   M  HGC  +++ YS+++DG+C+   ++ A++LL E+  E    +C P+
Sbjct: 314 GFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPD 373

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF-CVEGNLDEAYQLI 329
            VT+ ++I   C KG+   A+ ++D M   GC P+  T + ++ GF C     +EA  L+
Sbjct: 374 QVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLL 433

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           + +V+ G       Y SL   L R   ++ A  +F ++ A G+ PD +  + ++  LC
Sbjct: 434 NLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLC 491



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 173/336 (51%), Gaps = 12/336 (3%)

Query: 113 IIDVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           ++D +  + +    GC  SV    ++ +   K     +A+ +L +M      PD + YN 
Sbjct: 176 VLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNV 235

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I   C +GD+  A +++  +      PD +TY  ++K  C++ R E+A  L   M  + 
Sbjct: 236 LINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSND 295

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           CA + V ++A++  +C+ G + RA ++L +M + G  C+P+++TY+S++   C +  + E
Sbjct: 296 CAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHG--CTPDIITYSSIMDGLCKERRVDE 353

Query: 290 ALGILD----RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
           A+ +L      M +  C P++VT +T+I   C +G  D A +++D++   G +     Y+
Sbjct: 354 AIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYN 413

Query: 346 SLVVE-LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
            +V   L ++ + +EA  L + M+++G+ PD      +   L    ++     ++  ++ 
Sbjct: 414 CIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQA 473

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           +G   S D  +++ +LLGLC+K  +  A     +M+
Sbjct: 474 MGL--SPDKMLYNAILLGLCKKWRTDLAIDFFAYMV 507



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 148/283 (52%), Gaps = 10/283 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  I  N +I+  C  G +  A+ +++ +G       IITY +M+ G+C AG ++ A   
Sbjct: 94  PAVIPCNILIKKLCADGRVADAERVVEALGP---SATIITYNTMVNGYCRAGNIDAA--- 147

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            +++     A +   Y+ L+  +C  G +  AL +  +M   G  CSP+VVTY+ ++   
Sbjct: 148 RRMIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRG--CSPSVVTYSILLDAT 205

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C +   K+A+ +LD M + GC P+ VT + LI   C +G++ EA ++++ + + G     
Sbjct: 206 CKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDA 265

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y+ ++  L  ++R +EA+KL +KM ++   PD +  + +I  LC  G V     +   
Sbjct: 266 VTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQ 325

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + + G   + D   +S ++ GLC++    EA KL + +L + +
Sbjct: 326 MSEHG--CTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMV 366



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 157/330 (47%), Gaps = 15/330 (4%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           VVEA      +++   M  +   C    + + A  ++  +P     PDT  YN +IR  C
Sbjct: 118 VVEALGPSATIITYNTM--VNGYCRAGNI-DAARRMIDSVP---FAPDTFTYNPLIRALC 171

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            +G ++ A  +   M      P ++TY  ++   C     + A  L   M+  GC  ++V
Sbjct: 172 VRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIV 231

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L++ +C  G +  AL++L  +   G  C P+ VTYT V++  C     +EA  +L 
Sbjct: 232 TYNVLINAMCSQGDVGEALKVLNSLPSYG--CKPDAVTYTPVLKSLCSSERWEEADKLLT 289

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +M +  CAP+ VT + +I   C +G +  A +++ ++   G       YSS++  L + +
Sbjct: 290 KMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKER 349

Query: 356 RLKEAEKLFSKMLASGVK----PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           R+ EA KL  ++LA  V     PD +  + +I  LC  G       + +++ + G +  +
Sbjct: 350 RVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDI 409

Query: 412 DSDIHSVLLLG-LCRKNHSVEAAKLARFML 440
            +  ++ ++ G LC+   + EA  L   M+
Sbjct: 410 TT--YNCIVDGFLCKSCKTEEALDLLNLMV 437



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 162/382 (42%), Gaps = 62/382 (16%)

Query: 44  NNIEKTLATVKAKLDSTCVIE-VLHR-CFPSQSQMGIRFFIWAALQSSYRHSSF----MY 97
           N + + L      LD+  V + +LHR C PS     I        +S Y+ +      M 
Sbjct: 164 NPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSI-LLDATCKESGYKQAVVLLDEMR 222

Query: 98  NRACEMSRIKQNPSIII-----DVVEAYK------EEGCVV-SVKMMKVIFNLCEKARLA 145
           ++ CE   +  N  I       DV EA K        GC   +V    V+ +LC   R  
Sbjct: 223 SKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERW- 281

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            EA  +L KM   D  PD + +N VI   C+KG +  A +++  M      PDIITY S+
Sbjct: 282 EEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSI 341

Query: 206 IKGFCNAGRLEDACGLFKV----MKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           + G C   R+++A  L K     M    C  + V ++ ++  +C+ G  +RA++++ EM 
Sbjct: 342 MDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMS 401

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGM----------------------------------- 286
           + G  C P++ TY  ++  F  K                                     
Sbjct: 402 EHG--CIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSRED 459

Query: 287 -MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            M+ A+G+  R++A+G +P+++  + ++ G C +   D A      +V+ G +     Y 
Sbjct: 460 EMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYI 519

Query: 346 SLVVELVRTKRLKEAEKLFSKM 367
            LV  +     L+EA++L   +
Sbjct: 520 ILVEGIAYEGFLEEAKELLGNL 541



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
           +G +  AL ++  +   G  P  +  + LIK  C +G + +A ++++ +    ++ +   
Sbjct: 74  RGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVVEALGPSATIIT--- 130

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+++V    R   +  A ++   +      PD    + +IR LC+ G VL+   +++D+ 
Sbjct: 131 YNTMVNGYCRAGNIDAARRMIDSV---PFAPDTFTYNPLIRALCVRGCVLDALAVFDDML 187

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             G   SV +  +S+LL   C+++   +A  L   M  K
Sbjct: 188 HRGCSPSVVT--YSILLDATCKESGYKQAVVLLDEMRSK 224


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC  +++ N A  +  +M    + PD   Y  +I  FC+ G +  A +    M  
Sbjct: 485 KVIGLLCNASKVDN-AFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVR 543

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P+++TY ++I  +  A ++  A  LF++M   GC  N+V Y+AL+DG C+ G +E+
Sbjct: 544 DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEK 603

Query: 253 ALELLGEME--------------KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A ++   M                +G    PN+ TY +++   C    +KEA  +LD M 
Sbjct: 604 ACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMS 663

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             GC PN +    LI GFC  G LDEA  +  K+   G   +   YSSL+  L + KRL 
Sbjct: 664 VEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLD 723

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ S+ML +   P+ +  + MI  LC  G+  E + L   +E+ G
Sbjct: 724 LALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKG 771



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 172/349 (49%), Gaps = 11/349 (3%)

Query: 99  RACEM-SRIKQNPSIIIDVVEAYK-EEGCVVSVKMMK---VIFNLCEKARLANEAMWVLR 153
           +AC++ +R++ N  I  DV   +K ++G +    +     ++  LC KA    EA  +L 
Sbjct: 603 KACQIYARMRGNADIP-DVDMYFKIDDGNIRDPNIFTYGALVDGLC-KAHKVKEARDLLD 660

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M      P+ I+Y+ +I  FC+ G +  A  +   M      P++ TY S+I       
Sbjct: 661 VMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDK 720

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           RL+ A  +   M  + CA N++ Y+ ++DG+C++G  + A  L+  ME++G  C PNVVT
Sbjct: 721 RLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKG--CHPNVVT 778

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YT++I  F   G + + L ++ +M A GCAPN VT   LI   C  G LD+A+QL+D++ 
Sbjct: 779 YTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMK 838

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
                     Y  ++    R   +     L  ++  +   P   A  ++I   C  G++ 
Sbjct: 839 QTYWPKHMAGYRKVIEGFNREFIISLG--LLDEIAENVAVPIIPAYRILIDSFCKAGRLE 896

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               L++++      S+ D D++S L+  L   +   +A +L   M+K+
Sbjct: 897 LALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKR 945



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 180/391 (46%), Gaps = 23/391 (5%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM 103
           +  +K L   + KL+ T V++VL        ++G++FFIWA  Q  Y H+  +Y+   E+
Sbjct: 114 HKTQKFLRQFREKLNETLVVDVLS--LVKNPELGVKFFIWAGRQIGYGHTGPVYHALLEV 171

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
                N  +    +   ++E   +  K++ V+   C +  L N A+  L ++ +   +P 
Sbjct: 172 LGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPS 231

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
            + YN ++R+F E   +  A  + + M       D  T    +   C AGR  +A  L  
Sbjct: 232 RLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALAL-- 289

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            +++     + V Y+ ++ G+C     E A++ L  M      C PNVVTY  ++   CG
Sbjct: 290 -IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSS--CIPNVVTYRILL---CG 343

Query: 284 KGMMKEALG----ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             + K  LG    IL  M   GC P+R   ++LI  +C  G+   AY+L+ K+   G   
Sbjct: 344 -CLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQP 402

Query: 340 SGGCYSSLVVELVRTKRLKE------AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
               Y+ L+  +   ++L        AEK + +ML + V  + +  S + R LC  G+  
Sbjct: 403 GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFE 462

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           + + +  ++   GF+   D+  +S ++  LC
Sbjct: 463 KAYSIIREMMSKGFIP--DTSTYSKVIGLLC 491



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  +V     + +   KAR  + A  +   M      P+ + Y  +I   C+ G +  
Sbjct: 544 DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEK 603

Query: 183 ADEL---MKGMGLI---DLY----------PDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           A ++   M+G   I   D+Y          P+I TY +++ G C A ++++A  L  VM 
Sbjct: 604 ACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMS 663

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             GC  N + Y AL+DG C++G ++ A  +  +M + G    PNV TY+S+I        
Sbjct: 664 VEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG--YGPNVYTYSSLIDRLFKDKR 721

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +  AL +L RM    CAPN +  + +I G C  G  DEAY+L+  +   G   +   Y++
Sbjct: 722 LDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTA 781

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++    +  ++ +  +L  +M A G  P+ +   V+I   C  G + +   L +++++
Sbjct: 782 MIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 18/260 (6%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           +N+ R  C  G    A  +++ M      PD  TY  +I   CNA ++++A  LF+ MK 
Sbjct: 449 SNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS 508

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
           +    ++  Y+ L+D  C++G +++A +   EM ++G  C+PNVVTYT++I  +     M
Sbjct: 509 NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG--CAPNVVTYTALIHAYLKARKM 566

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV--------------V 333
             A  + + M + GC PN VT + LI G C  G +++A Q+  ++              +
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI 626

Query: 334 AGGSVSSGG--CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
             G++       Y +LV  L +  ++KEA  L   M   G +P+ +    +I   C  G+
Sbjct: 627 DDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 392 VLEGFCLYEDIEKIGFLSSV 411
           + E   ++  + + G+  +V
Sbjct: 687 LDEAQMVFTKMSERGYGPNV 706



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 6/230 (2%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ VL +M E    P+ IIY  +I   C+ G    A  LM  M     +P+++TY +MI 
Sbjct: 725 ALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMID 784

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF  AG+++    L + M   GCA N V Y  L++  C  G ++ A +LL EM++     
Sbjct: 785 GFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYW-- 842

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             ++  Y  VI+ F  + ++  +LG+LD +      P       LI  FC  G L+ A +
Sbjct: 843 PKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALE 900

Query: 328 LIDKVVAGGSVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           L  ++ +  S S+     YSSL+  L    ++ +A +L++ M+  G  P+
Sbjct: 901 LHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPE 950



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 8/245 (3%)

Query: 122 EEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E  C  +V +  ++I  LC+  +  +EA  ++  M E    P+ + Y  +I  F + G +
Sbjct: 734 ENSCAPNVIIYTEMIDGLCKVGK-TDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKV 792

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
               ELM+ MG     P+ +TY  +I   C AG L+DA  L   MK+     ++  Y  +
Sbjct: 793 DKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKV 852

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++G  R      +L LL E+ +      P +  Y  +I  FC  G ++ AL +   M + 
Sbjct: 853 IEGFNR--EFIISLGLLDEIAENVA--VPIIPAYRILIDSFCKAGRLELALELHKEMSSC 908

Query: 301 G--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
               A ++   S+LI+   +   +D+A++L   ++  G +     +  LV  L+R  R +
Sbjct: 909 TSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWE 968

Query: 359 EAEKL 363
           EA +L
Sbjct: 969 EALQL 973


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 172/365 (47%), Gaps = 36/365 (9%)

Query: 114 IDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +D V +  E+ CV   V    V+ +   +A  A  AM ++  M    L+P  + YN+V++
Sbjct: 114 VDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLK 173

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G    A E+ K M    + PD+ ++  +I GFC  G +E+A  ++K M+  G   
Sbjct: 174 GLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKP 233

Query: 233 NLVAYSALLDGICRLGSMERALELLGEM-------------------------------- 260
           +LV++S L+    R G M+ A+  L EM                                
Sbjct: 234 DLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVR 293

Query: 261 -EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
            E  G  C P+VVTY +++   C +  + +A G+L+ M   G  P+  T +TLI G+C+E
Sbjct: 294 DEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIE 353

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G LD+A QL D ++          Y++L+  + R   L +A  L+  M +  + P+ +  
Sbjct: 354 GKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTY 413

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           S++I   C  GQV + F   +++   G L ++ +  ++ ++ G CR  +  +  K  + M
Sbjct: 414 SILIDSHCEKGQVEDAFGFLDEMINKGILPNIMT--YNSIIKGYCRSGNVSKGQKFLQKM 471

Query: 440 LKKRI 444
           +  ++
Sbjct: 472 MVNKV 476



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 152/304 (50%), Gaps = 14/304 (4%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADELMKGMGLIDLYPDIITY 202
           + AM  LR+M  F L PD +IY  VI  FC  G   D +   + M G G +   PD++TY
Sbjct: 252 DHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCL---PDVVTY 308

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            +++ G C   RL DA GL   M+  G   +L  ++ L+ G C  G +++AL+L   M  
Sbjct: 309 NTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN 368

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
           +     P++VTY ++I   C +G + +A  + D M +    PN VT S LI   C +G +
Sbjct: 369 Q--RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQV 426

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           ++A+  +D+++  G + +   Y+S++    R+  + + +K   KM+ + V PD +  + +
Sbjct: 427 EDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 486

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFML 440
           I       ++ + F L   +EK      V  D+  +++L+ G     +  EA  +   M 
Sbjct: 487 IHGYIKEDKMHDAFKLLNMMEK----EKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 542

Query: 441 KKRI 444
            K I
Sbjct: 543 AKGI 546



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 38/308 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI   C +A L ++A+ V  +M      PD + YN ++   C++  ++ A+ L+  M   
Sbjct: 276 VIGGFC-RAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRER 334

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ T+ ++I G+C  G+L+ A  LF  M       ++V Y+ L+DG+CR G +++A
Sbjct: 335 GVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKA 394

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  +M     +  PN VTY+ +I   C KG +++A G LD M   G  PN +T +++I
Sbjct: 395 NDLWDDMHSR--EIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 452

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL---------- 363
           KG+C  GN+ +  + + K++          Y++L+   ++  ++ +A KL          
Sbjct: 453 KGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 512

Query: 364 -------------------------FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                                    F KM A G++PD      MI      G   E F L
Sbjct: 513 PDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQL 572

Query: 399 YEDIEKIG 406
           ++++ + G
Sbjct: 573 HDEMLQRG 580



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 145/316 (45%), Gaps = 35/316 (11%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           +T   N ++  +C+  +    D ++  M    ++PD++T+  M+     AG  E A  L 
Sbjct: 94  NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 153

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE-------------GGDC-- 267
             M   G    +V Y+++L G+CR G  ++A E+  EM+               GG C  
Sbjct: 154 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRV 213

Query: 268 ------------------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
                              P++V+++ +I +F  +G M  A+  L  M   G  P+ V  
Sbjct: 214 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 273

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           + +I GFC  G + +A ++ D++V  G +     Y++L+  L + +RL +AE L ++M  
Sbjct: 274 TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 333

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            GV PD    + +I   C+ G++ +   L++ +        + +  ++ L+ G+CR+   
Sbjct: 334 RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT--YNTLIDGMCRQGDL 391

Query: 430 VEAAKLARFMLKKRIW 445
            +A  L   M  + I+
Sbjct: 392 DKANDLWDDMHSREIF 407


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 147/288 (51%), Gaps = 4/288 (1%)

Query: 148  AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
            A  V  +M +FDL P+ + YN +I   C  GD   A  L+  M    L  + +TY +++ 
Sbjct: 1108 AAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLN 1167

Query: 208  GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            G C   + E A  L + M+ +      +AY+ L+DG+C+ G ++ A++L+G M K+G   
Sbjct: 1168 GLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDG--V 1225

Query: 268  SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            +P+V+TY+S+I  FC  G +K A  I+ RM   G   N++  STLI  FC  GN+ EA +
Sbjct: 1226 NPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMK 1285

Query: 328  LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
            +   +   G  +     + LV  L R  +L EAEK    M   G+ P+ +    +I    
Sbjct: 1286 VYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYG 1345

Query: 388  LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
              G  L  F  ++D+ K G   S  +  +  LL GLC+  + VEA K 
Sbjct: 1346 SIGDPLNAFSFFDDMIKCGQHPSFFT--YGSLLKGLCKGGNLVEAKKF 1391



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 152/319 (47%), Gaps = 6/319 (1%)

Query: 122  EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
            ++G   +V    ++ N LC +  L  +A  +L++M E    P  + YN ++  +C+KG  
Sbjct: 977  DKGICPNVGTFNILINGLCVEGNL-KKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRY 1035

Query: 181  IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             AA EL+  M    +  D+ TY   I   C   R   A  L K M++   + N V Y+ L
Sbjct: 1036 KAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTL 1095

Query: 241  LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
            ++G  + G +  A ++  EM K   D SPN VTY ++I   C  G  +EAL +LD MEA 
Sbjct: 1096 INGFVKEGKIGVAAQVFNEMSK--FDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAA 1153

Query: 301  GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
            G   N VT  TL+ G C     + A +L++++     V     Y+ L+  L +   L EA
Sbjct: 1154 GLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEA 1213

Query: 361  EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             +L   M   GV PD +  S +I   C  G +     +   + + G +  ++  I+S L+
Sbjct: 1214 VQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLV--LNKIIYSTLI 1271

Query: 421  LGLCRKNHSVEAAKLARFM 439
               C+  +  EA K+   M
Sbjct: 1272 YNFCQHGNVTEAMKVYAVM 1290



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 156/312 (50%), Gaps = 14/312 (4%)

Query: 147  EAMWVL-RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            E +W L R+M +  + P+   +N +I   C +G++  A  L+K M      P I+TY ++
Sbjct: 966  ELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTL 1025

Query: 206  IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
            +  +C  GR + A  L   M   G  A++  Y+  +D +C      +A  LL +M KE  
Sbjct: 1026 LNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEM- 1084

Query: 266  DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              SPN VTY ++I  F  +G +  A  + + M     +PN VT + LI G C  G+ +EA
Sbjct: 1085 -ISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEA 1143

Query: 326  YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             +L+D + A G   +   Y +L+  L + ++ + A++L  +M  + +    +A +V+I  
Sbjct: 1144 LRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDG 1203

Query: 386  LCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKR 443
            LC  G + E   L  ++ K G    V+ D+  +S L+ G CR  +   A ++       R
Sbjct: 1204 LCKNGMLDEAVQLVGNMYKDG----VNPDVITYSSLINGFCRVGNIKSAKEII-----CR 1254

Query: 444  IWLQGPYVDKIV 455
            ++  G  ++KI+
Sbjct: 1255 MYRSGLVLNKII 1266



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 137/307 (44%), Gaps = 35/307 (11%)

Query: 134  VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            +I  LC+   L +EA+ ++  M +  + PD I Y+++I  FC  G++ +A E++  M   
Sbjct: 1200 LIDGLCKNGML-DEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRS 1258

Query: 194  DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             L  + I Y ++I  FC  G + +A  ++ VM  +G  A+    + L+  +CR G +  A
Sbjct: 1259 GLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEA 1318

Query: 254  LELLGEMEKEG-------GDC--------------------------SPNVVTYTSVIQI 280
             + L  M + G        DC                           P+  TY S+++ 
Sbjct: 1319 EKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKG 1378

Query: 281  FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
             C  G + EA   L+R+  +  A + V  +TL+   C  GNL EA  L DK+V    +  
Sbjct: 1379 LCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPD 1438

Query: 341  GGCYSSLVVELVRTKRLKEAEKLFSKMLASG-VKPDGLACSVMIRELCLGGQVLEGFCLY 399
               YSSL+  L R  +   A  LF   +  G + P+ +  + ++  L   G     F  +
Sbjct: 1439 SYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFF 1498

Query: 400  EDIEKIG 406
            E++ K G
Sbjct: 1499 EEMMKKG 1505



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 137/299 (45%), Gaps = 4/299 (1%)

Query: 141  KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
            KA     A +   +M +    PDT+ +N +I     +G M+ A++    M    + P++ 
Sbjct: 1487 KAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLA 1546

Query: 201  TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            TY  ++ GF     L     L+  M R G   + + + +L+ G+ + G  +  ++LLG+M
Sbjct: 1547 TYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKM 1606

Query: 261  EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              EG     +  T+  +I  +   G M++A  +++ M  LG  P+R T + +  G   + 
Sbjct: 1607 IMEG--TLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKS 1664

Query: 321  NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
               E+  ++ +++  G +     Y +L+  + R   ++ A KL  +M A G     +A S
Sbjct: 1665 AFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAES 1724

Query: 381  VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
             M+R L   G+  +   + + + ++  L ++ +   + L+   CR     EA KL   M
Sbjct: 1725 AMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIAT--FTTLMHRFCRDAKIAEALKLKGVM 1781



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 152/357 (42%), Gaps = 41/357 (11%)

Query: 124  GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
            G V SV    ++   C+   L +EA+ +  KM + ++ PD+  Y++++   C KG  + A
Sbjct: 1400 GAVDSVMYNTLLAETCKSGNL-HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTA 1458

Query: 184  DELM-KGMGLIDLYPDIITYVSMIKGFCNAGR-------------------------LED 217
              L    MG   L+P+ + Y  ++ G   AG                          + D
Sbjct: 1459 VCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIID 1518

Query: 218  ACG----------LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            +C            F  M+  G   NL  Y+ LL G  +  ++ R L L   M +EG   
Sbjct: 1519 SCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREG--I 1576

Query: 268  SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             P+ +T+ S+I      G+    + +L +M   G   ++ T + LI  +   G + +A+ 
Sbjct: 1577 FPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFD 1636

Query: 328  LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
            L++ +   G       Y+ +   L +    +E+  +  +ML +GV P       +I  +C
Sbjct: 1637 LVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMC 1696

Query: 388  LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
              G +   F L +++E +GF S   ++  S ++ GL     + +A  +   ML+ R+
Sbjct: 1697 RVGDIQGAFKLKDEMEALGFGSHEVAE--SAMVRGLLHCGKTEDAMLVLDHMLRMRL 1751



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 127/293 (43%), Gaps = 6/293 (2%)

Query: 134  VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            ++ +LC   +L  EA   L  M    L P++I Y+ +I  +   GD + A      M   
Sbjct: 1305 LVSSLCRDGKLG-EAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKC 1363

Query: 194  DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              +P   TY S++KG C  G L +A      +     A + V Y+ LL   C+ G++  A
Sbjct: 1364 GQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEA 1423

Query: 254  LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTISTL 312
            + L  +M +   +  P+  TY+S++   C KG    A+ +       G   PN V  + L
Sbjct: 1424 VALFDKMVQN--NVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCL 1481

Query: 313  IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
            + G    G+   A+   ++++  G+      +++++    R  ++ +A   FS M   GV
Sbjct: 1482 VDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGV 1541

Query: 373  KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
             P+    ++++        +L    LY  + + G     D      L+LGL +
Sbjct: 1542 CPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFP--DKLTFHSLILGLSK 1592



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 149/370 (40%), Gaps = 8/370 (2%)

Query: 109  NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
            +P       E   ++G          I + C +     +A      M  + + P+   YN
Sbjct: 1490 HPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYN 1549

Query: 169  NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
             ++  F +K  ++    L   M    ++PD +T+ S+I G   +G  +    L   M   
Sbjct: 1550 ILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIME 1609

Query: 229  GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
            G  A+   ++ L++     G M +A +L+  M   G    P+  TY  +      K   +
Sbjct: 1610 GTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLG--VFPDRDTYNHIFNGLNKKSAFR 1667

Query: 289  EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            E+  +L  M   G  P      TLI G C  G++  A++L D++ A G  S     S++V
Sbjct: 1668 ESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMV 1727

Query: 349  VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
              L+   + ++A  +   ML   + P     + ++   C   ++ E   L   +E  G  
Sbjct: 1728 RGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGL- 1786

Query: 409  SSVDSDIHSVLLLGLCRKNHSVEAAKLARFM----LKKRIWLQGPYVDKIVEHLKKSGDE 464
              +D   ++VL++G+C    S  A +L   M    L   I      VD I         E
Sbjct: 1787 -KLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGE 1845

Query: 465  ELITNLPKIG 474
            +L+T+L + G
Sbjct: 1846 KLLTDLQERG 1855



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 116/264 (43%), Gaps = 2/264 (0%)

Query: 123  EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
            EG +       ++ N   ++    +A  ++  M    + PD   YN++     +K     
Sbjct: 1609 EGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRE 1668

Query: 183  ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
            +  ++  M    + P    Y+++I G C  G ++ A  L   M+  G  ++ VA SA++ 
Sbjct: 1669 STVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVR 1728

Query: 243  GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            G+   G  E A+ +L  M +      P + T+T+++  FC    + EAL +   ME  G 
Sbjct: 1729 GLLHCGKTEDAMLVLDHMLRM--RLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGL 1786

Query: 303  APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
              + V  + LI G C  G+   A++L +++       +   Y+ LV  +     L + EK
Sbjct: 1787 KLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEK 1846

Query: 363  LFSKMLASGVKPDGLACSVMIREL 386
            L + +   G+   G +   + +EL
Sbjct: 1847 LLTDLQERGLISWGGSTQHLDKEL 1870



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 2/218 (0%)

Query: 135  IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
            IFN   K     E+  VL +M E  + P    Y  +I   C  GD+  A +L   M  + 
Sbjct: 1656 IFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALG 1715

Query: 195  LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
                 +   +M++G  + G+ EDA  +   M R      +  ++ L+   CR   +  AL
Sbjct: 1716 FGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEAL 1775

Query: 255  ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            +L G ME  G     +VV Y  +I   C  G    A  + + M      PN  T + L+ 
Sbjct: 1776 KLKGVMELCG--LKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVD 1833

Query: 315  GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
                  NL +  +L+  +   G +S GG    L  EL 
Sbjct: 1834 AISAANNLIQGEKLLTDLQERGLISWGGSTQHLDKELT 1871


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC  +++ N A  +  +M    + PD   Y  +I  FC+ G +  A +    M  
Sbjct: 485 KVIGLLCNASKVDN-AFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVR 543

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P+++TY ++I  +  A ++  A  LF++M   GC  N+V Y+AL+DG C+ G +E+
Sbjct: 544 DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEK 603

Query: 253 ALELLGEME--------------KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A ++   M                +G    PN+ TY +++   C    +KEA  +LD M 
Sbjct: 604 ACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMS 663

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             GC PN +    LI GFC  G LDEA  +  K+   G   +   YSSL+  L + KRL 
Sbjct: 664 VEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLD 723

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ S+ML +   P+ +  + MI  LC  G+  E + L   +E+ G
Sbjct: 724 LALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKG 771



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 180/391 (46%), Gaps = 23/391 (5%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM 103
           +  +K L   + KL+ T V++VL        ++G++FFIWA  Q  Y H+  +Y+   E+
Sbjct: 114 HKTQKFLRQFREKLNETLVVDVLS--LVKNPELGVKFFIWAGRQIGYGHTGPVYHALLEV 171

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
                N  +    +   ++E   +  K++ V+   C +  L N A+  L ++ +   +P 
Sbjct: 172 LGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPS 231

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
            + YN ++R+F E   +  A  + + M       D  T    +   C AGR  +A  L  
Sbjct: 232 RLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALAL-- 289

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            +++     + V Y+ ++ G+C     E A++ L  M      C PNVVTY  ++   CG
Sbjct: 290 -IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSS--CIPNVVTYRILL---CG 343

Query: 284 KGMMKEALG----ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             + K  LG    IL  M   GC P+R   ++LI  +C  G+   AY+L+ K+   G   
Sbjct: 344 -CLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQP 402

Query: 340 SGGCYSSLVVELVRTKRLKE------AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
               Y+ L+  +   ++L        AEK + +ML + V  + +  S + R LC  G+  
Sbjct: 403 GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFE 462

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           + + +  ++   GF+   D+  +S ++  LC
Sbjct: 463 KAYSIIREMMSKGFIP--DTSTYSKVIGLLC 491



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 171/349 (48%), Gaps = 11/349 (3%)

Query: 99  RACEM-SRIKQNPSIIIDVVEAYK-EEGCVVSVKMMK---VIFNLCEKARLANEAMWVLR 153
           +AC++ +R++ N  I  DV   +K ++G +    +     ++  LC KA    EA  +L 
Sbjct: 603 KACQIYARMRGNADIP-DVDMYFKIDDGNIRDPNIFTYGALVDGLC-KAHKVKEARDLLD 660

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M      P+ I+Y+ +I  FC+ G +  A  +   M      P++ TY S+I       
Sbjct: 661 VMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDK 720

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           RL+ A  +   M  + CA N++ Y+ ++DG+C++G  + A  L+  ME++G  C PNVVT
Sbjct: 721 RLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKG--CHPNVVT 778

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YT++I  F   G + + L ++ +M A GCAPN VT   LI   C  G LD+A+QL+D++ 
Sbjct: 779 YTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMK 838

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
                     Y  ++    R   +     L  ++  +   P   A  ++I   C  G++ 
Sbjct: 839 QTYWPKHMAGYRKVIEGFNREFIISLG--LLDEIAENVAVPIIPAYRILIDSFCKAGRLE 896

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               L++ +      S+ D D++S L+  L   +   +A +L   M+K+
Sbjct: 897 LALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKR 945



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  +V     + +   KAR  + A  +   M      P+ + Y  +I   C+ G +  
Sbjct: 544 DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEK 603

Query: 183 ADEL---MKGMGLI---DLY----------PDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           A ++   M+G   I   D+Y          P+I TY +++ G C A ++++A  L  VM 
Sbjct: 604 ACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMS 663

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             GC  N + Y AL+DG C++G ++ A  +  +M + G    PNV TY+S+I        
Sbjct: 664 VEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG--YGPNVYTYSSLIDRLFKDKR 721

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +  AL +L RM    CAPN +  + +I G C  G  DEAY+L+  +   G   +   Y++
Sbjct: 722 LDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTA 781

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++    +  ++ +  +L  +M A G  P+ +   V+I   C  G + +   L +++++
Sbjct: 782 MIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 18/260 (6%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           +N+ R  C  G    A  +++ M      PD  TY  +I   CNA ++++A  LF+ MK 
Sbjct: 449 SNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS 508

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
           +    ++  Y+ L+D  C++G +++A +   EM ++G  C+PNVVTYT++I  +     M
Sbjct: 509 NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG--CAPNVVTYTALIHAYLKARKM 566

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV--------------V 333
             A  + + M + GC PN VT + LI G C  G +++A Q+  ++              +
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI 626

Query: 334 AGGSVSSGG--CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
             G++       Y +LV  L +  ++KEA  L   M   G +P+ +    +I   C  G+
Sbjct: 627 DDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 392 VLEGFCLYEDIEKIGFLSSV 411
           + E   ++  + + G+  +V
Sbjct: 687 LDEAQMVFTKMSERGYGPNV 706



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 6/230 (2%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ VL +M E    P+ IIY  +I   C+ G    A  LM  M     +P+++TY +MI 
Sbjct: 725 ALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMID 784

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF  AG+++    L + M   GCA N V Y  L++  C  G ++ A +LL EM++     
Sbjct: 785 GFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYW-- 842

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             ++  Y  VI+ F  + ++  +LG+LD +      P       LI  FC  G L+ A +
Sbjct: 843 PKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALE 900

Query: 328 LIDKVVAGGSVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           L   + +  S S+     YSSL+  L    ++ +A +L++ M+  G  P+
Sbjct: 901 LHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPE 950



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 8/238 (3%)

Query: 122 EEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E  C  +V +  ++I  LC+  +  +EA  ++  M E    P+ + Y  +I  F + G +
Sbjct: 734 ENSCAPNVIIYTEMIDGLCKVGK-TDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKV 792

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
               ELM+ MG     P+ +TY  +I   C AG L+DA  L   MK+     ++  Y  +
Sbjct: 793 DKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKV 852

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++G  R      +L LL E+ +      P +  Y  +I  FC  G ++ AL +   M + 
Sbjct: 853 IEGFNR--EFIISLGLLDEIAENVA--VPIIPAYRILIDSFCKAGRLELALELHKXMSSC 908

Query: 301 G--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
               A ++   S+LI+   +   +D+A++L   ++  G +     +  LV  L+R  R
Sbjct: 909 TSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINR 966


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 153/312 (49%), Gaps = 6/312 (1%)

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
           M    NL  +A    +A+ + R   E    P+   Y ++I   C+ G +  A EL+  M 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLFR---EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
              + P +  +  +IKG C AGR  DA G FK +    C  +++ ++ L+D + + G +E
Sbjct: 58  DRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE 117

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
            A ++   M      C PNVVTYT+VI   C  G +  A+ +LD M   GC PN +T S 
Sbjct: 118 EAFQIFESMHTSS-QCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           L++G C  G  D+ + L+ ++   G       Y++L+  L +++RL EA +L   M+ SG
Sbjct: 177 LVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG 236

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
             P  +  + ++   C   QV   F L + + + G    V +  ++ ++ GLCR     +
Sbjct: 237 CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVIN--YNTVIAGLCRDARLDD 294

Query: 432 AAKLARFMLKKR 443
           A  L + M+  R
Sbjct: 295 AQALLKQMVAAR 306



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 177/373 (47%), Gaps = 21/373 (5%)

Query: 87  QSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142
           +  ++    MYN      C+  R+ +     +++V+     GC  +V     +  L  ++
Sbjct: 199 RRGFQPDVIMYNTLLNGLCKSRRLDE----ALELVQLMIRSGCYPTVVTYNSLMELFCRS 254

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           +  + A  +++ M E    PD I YN VI   C    +  A  L+K M      PD+ITY
Sbjct: 255 KQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITY 314

Query: 203 VSMIKGFCNAGR------LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
            ++I G C   R      LE AC + ++MK+ GC  N   Y+ +++G+CR    ++AL L
Sbjct: 315 STIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALAL 374

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M     +  P++ +++ VI   C    +  A  I   M    C PN V  + LI G 
Sbjct: 375 LRRMIDS--EVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
              G +D+A ++ + +V   S   G   Y+S++  L    R++EA ++   M+     PD
Sbjct: 433 SKGGEVDKAVRVFELMVE--SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPD 490

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G +   +IR LC    V E + L++ +E  GF  +++  +++VL+  LC+K    +A  +
Sbjct: 491 GASYGALIRGLCRVSCVEEAYELFQAVEAKGF--AMEVGVYNVLVNELCKKKRLSDAHGV 548

Query: 436 ARFMLKKRIWLQG 448
           A  +++     QG
Sbjct: 549 ANKLIEAGYKQQG 561



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 173/351 (49%), Gaps = 11/351 (3%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I++++   E GC  +V    V+     KA   ++   +L++M     +PD I+YN ++  
Sbjct: 156 IELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNG 215

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C+   +  A EL++ M     YP ++TY S+++ FC + +++ A  L +VM   GC  +
Sbjct: 216 LCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPD 275

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC------GKGMM 287
           ++ Y+ ++ G+CR   ++ A  LL +M      C P+V+TY+++I   C          +
Sbjct: 276 VINYNTVIAGLCRDARLDDAQALLKQM--VAARCVPDVITYSTIIDGLCKDWRVDADWKL 333

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           + A  IL+ M+  GC PN  T + +I+G C      +A  L+ +++    V     +S +
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMV 393

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  L ++  L  A K+F  M     KP+ +A + +I  L  GG+V +   ++E + +  F
Sbjct: 394 IGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SF 452

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
              V +  ++ +L GLC      EA ++   M+ K  +  G     ++  L
Sbjct: 453 RPGVAT--YNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGL 501



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 138/265 (52%), Gaps = 9/265 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC+  +L + A+ +L  M E    P+ I Y+ ++   C+ G       L++
Sbjct: 137 VTYTTVINGLCKDGKL-DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQ 195

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      PD+I Y +++ G C + RL++A  L ++M R GC   +V Y++L++  CR  
Sbjct: 196 EMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSK 255

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++RA  L+  M + G  C P+V+ Y +VI   C    + +A  +L +M A  C P+ +T
Sbjct: 256 QVDRAFRLIQVMSERG--CPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVIT 313

Query: 309 ISTLIKGFCVEGNLDEAYQL------IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            ST+I G C +  +D  ++L      ++ +   G   + G Y+ ++  L R ++ ++A  
Sbjct: 314 YSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALA 373

Query: 363 LFSKMLASGVKPDGLACSVMIRELC 387
           L  +M+ S V PD  + S++I  LC
Sbjct: 374 LLRRMIDSEVVPDLSSFSMVIGSLC 398


>gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 636

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 152/321 (47%), Gaps = 4/321 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V +V     I N   K +   +   +  +M    +  +   +N +  + C  GD+   
Sbjct: 220 GFVPNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKI 279

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           +  ++ M      PD++TY ++I  +   GRLEDA  L+K+M R G   +LV+Y++L+ G
Sbjct: 280 NGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRG 339

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +CRLG +  A +L   M   G D  P+VV Y ++I  +C  GM++EA  +L  M  +G  
Sbjct: 340 LCRLGRVREAHQLFHRMIDRGMD--PDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIH 397

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+  T   L++G+  EG L  A  L+ ++   G   +   Y  L++ L R  R   A+ L
Sbjct: 398 PDSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSL 457

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
             ++L    +PD    + +I   C    V E   L   +E I       +D +  L+  +
Sbjct: 458 LERILEDSFQPDSDIYNKLIESFCRSNNVSEALLL--KLEMINRNYKPTTDTYKSLIHCM 515

Query: 424 CRKNHSVEAAKLARFMLKKRI 444
           C  N SV+   L   M++  +
Sbjct: 516 CEINRSVDGEGLMVEMVESEV 536



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 152/315 (48%), Gaps = 8/315 (2%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADEL-MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           + +I+  +I+ +  K D+I       K M  +   P++I    ++ G            L
Sbjct: 189 NPVIFEMLIKAYV-KLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWEL 247

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           ++ M R G  +N   ++ L   +CR G + +    L +ME+EG D  P+VVTY ++I  +
Sbjct: 248 YEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEKMEEEGFD--PDVVTYNTLIDSY 305

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
             +G +++A  +   M   G  P+ V+ ++L++G C  G + EA+QL  +++  G     
Sbjct: 306 VRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRMIDRGMDPDV 365

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++L+    +   L+EA  L  +M+  G+ PD   C +++      G+++    L  +
Sbjct: 366 VLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVE 425

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
           I+K+G   +V  DI+  L++ LCR++    A  L   +L+          +K++E   +S
Sbjct: 426 IQKLGV--TVAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRS 483

Query: 462 GD--EELITNLPKIG 474
            +  E L+  L  I 
Sbjct: 484 NNVSEALLLKLEMIN 498



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 120/275 (43%), Gaps = 2/275 (0%)

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           +E  +EEG    V     + +   +     +A ++ + M    + PD + Y +++R  C 
Sbjct: 283 LEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCR 342

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
            G +  A +L   M    + PD++ Y ++I  +C  G L++A  L   M   G   +   
Sbjct: 343 LGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFT 402

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
              L++G  R G +  AL L+ E++K G   + ++  Y  +I   C +     A  +L+R
Sbjct: 403 CRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKY--LIISLCREDRPFAAKSLLER 460

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           +      P+    + LI+ FC   N+ EA  L  +++      +   Y SL+  +    R
Sbjct: 461 ILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINR 520

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
             + E L  +M+ S V PD   C  ++   C  G 
Sbjct: 521 SVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGN 555



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 111/280 (39%), Gaps = 34/280 (12%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R+  EA  +  +M +  + PD ++YN +I  +C+ G +  A  L+  M  I ++P
Sbjct: 340 LCRLGRV-REAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHP 398

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS-------M 250
           D  T   +++G+   GRL  A  L   +++ G       Y  L+  +CR          +
Sbjct: 399 DSFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLL 458

Query: 251 ERALE--------------------------LLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           ER LE                          LL ++E    +  P   TY S+I   C  
Sbjct: 459 ERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEI 518

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
               +  G++  M      P+      L+ G+C EGN D+A  L+              +
Sbjct: 519 NRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAQDFQFFDSESF 578

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           +SLV          +  +L  +ML +G  P+ L C  +I 
Sbjct: 579 NSLVKVYRDVGNETKLMELQDRMLKAGFLPNSLTCRYIIH 618



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 4/203 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++V   ++ G  V+  + K +I +LC + R    A  +L ++ E   +PD+ IYN +I 
Sbjct: 420 LNLVVEIQKLGVTVAHDIYKYLIISLCREDR-PFAAKSLLERILEDSFQPDSDIYNKLIE 478

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            FC   ++  A  L   M   +  P   TY S+I   C   R  D  GL   M       
Sbjct: 479 SFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIP 538

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +     AL++G C+ G+ ++A  LL    ++         ++ S+++++   G   + + 
Sbjct: 539 DHEICRALVNGYCKEGNADKAESLLVSFAQDFQFFDSE--SFNSLVKVYRDVGNETKLME 596

Query: 293 ILDRMEALGCAPNRVTISTLIKG 315
           + DRM   G  PN +T   +I G
Sbjct: 597 LQDRMLKAGFLPNSLTCRYIIHG 619


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 172/365 (47%), Gaps = 36/365 (9%)

Query: 114 IDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +D V +  E+ CV   V    V+ +   +A  A  AM ++  M    L+P  + YN+V++
Sbjct: 175 VDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLK 234

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G    A E+ K M    + PD+ ++  +I GFC  G +E+A  ++K M+  G   
Sbjct: 235 GLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKP 294

Query: 233 NLVAYSALLDGICRLGSMERALELLGEM-------------------------------- 260
           +LV++S L+    R G M+ A+  L EM                                
Sbjct: 295 DLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVR 354

Query: 261 -EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
            E  G  C P+VVTY +++   C +  + +A G+L+ M   G  P+  T +TLI G+C+E
Sbjct: 355 DEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIE 414

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G LD+A QL D ++          Y++L+  + R   L +A  L+  M +  + P+ +  
Sbjct: 415 GKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTY 474

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           S++I   C  GQV + F   +++   G L ++ +  ++ ++ G CR  +  +  K  + M
Sbjct: 475 SILIDSHCEKGQVEDAFGFLDEMINKGILPNIMT--YNSIIKGYCRSGNVSKGQKFLQKM 532

Query: 440 LKKRI 444
           +  ++
Sbjct: 533 MVNKV 537



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 157/335 (46%), Gaps = 45/335 (13%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADELMKGMGLIDLYPDIITY 202
           + AM  LR+M  F L PD +IY  VI  FC  G   D +   + M G G +   PD++TY
Sbjct: 313 DHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCL---PDVVTY 369

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANL---------------------------- 234
            +++ G C   RL DA GL   M+  G   +L                            
Sbjct: 370 NTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN 429

Query: 235 -------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
                  V Y+ L+DG+CR G +++A +L  +M     +  PN VTY+ +I   C KG +
Sbjct: 430 QRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSR--EIFPNHVTYSILIDSHCEKGQV 487

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           ++A G LD M   G  PN +T +++IKG+C  GN+ +  + + K++          Y++L
Sbjct: 488 EDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 547

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +   ++  ++ +A KL + M    V+PD +  +++I    + G V E   ++E +   G 
Sbjct: 548 IHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI 607

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               D   +  ++ G     +S EA +L   ML++
Sbjct: 608 --EPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 640



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 148/309 (47%), Gaps = 38/309 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI   C +A L ++A+ V  +M      PD + YN ++   C++  ++ A+ L+  M   
Sbjct: 337 VIGGFC-RAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRER 395

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ T+ ++I G+C  G+L+ A  LF  M       ++V Y+ L+DG+CR G +++A
Sbjct: 396 GVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKA 455

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  +M     +  PN VTY+ +I   C KG +++A G LD M   G  PN +T +++I
Sbjct: 456 NDLWDDMHSR--EIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 513

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL---------- 363
           KG+C  GN+ +  + + K++          Y++L+   ++  ++ +A KL          
Sbjct: 514 KGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 573

Query: 364 -------------------------FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                                    F KM A G++PD      MI      G   E F L
Sbjct: 574 PDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQL 633

Query: 399 YEDIEKIGF 407
           ++++ + GF
Sbjct: 634 HDEMLQRGF 642



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 127/242 (52%), Gaps = 3/242 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C + +L ++A+ +   M    LRPD + YN +I   C +GD+  A++L   M   
Sbjct: 407 LIHGYCIEGKL-DKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSR 465

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +++P+ +TY  +I   C  G++EDA G    M   G   N++ Y++++ G CR G++ + 
Sbjct: 466 EIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKG 525

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            + L +M       SP+++TY ++I  +  +  M +A  +L+ ME     P+ VT + LI
Sbjct: 526 QKFLQKMMVN--KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLI 583

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GF V GN+ EA  + +K+ A G       Y S++   V     KEA +L  +ML  G  
Sbjct: 584 NGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFA 643

Query: 374 PD 375
           PD
Sbjct: 644 PD 645



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 145/316 (45%), Gaps = 35/316 (11%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           +T   N ++  +C+  +    D ++  M    ++PD++T+  M+     AG  E A  L 
Sbjct: 155 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 214

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE-------------GGDC-- 267
             M   G    +V Y+++L G+CR G  ++A E+  EM+               GG C  
Sbjct: 215 DSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRV 274

Query: 268 ------------------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
                              P++V+++ +I +F  +G M  A+  L  M   G  P+ V  
Sbjct: 275 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 334

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           + +I GFC  G + +A ++ D++V  G +     Y++L+  L + +RL +AE L ++M  
Sbjct: 335 TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 394

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            GV PD    + +I   C+ G++ +   L++ +        + +  ++ L+ G+CR+   
Sbjct: 395 RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT--YNTLIDGMCRQGDL 452

Query: 430 VEAAKLARFMLKKRIW 445
            +A  L   M  + I+
Sbjct: 453 DKANDLWDDMHSREIF 468


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 213/474 (44%), Gaps = 74/474 (15%)

Query: 63  IEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRA-CEMSRIKQNPSIIIDVVEAYK 121
           I ++  C   ++      F+    QS  R   F Y+     +SR+    +++ D      
Sbjct: 149 IHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVM-DRYHRML 207

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
            EG   ++ +   + N LC+   +A +A  +++K+ E ++ PDT  Y ++I   C K D+
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVA-DAETIMKKVFESEMSPDTFTYTSMILGHCRKHDL 266

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL------------------------- 215
            +A ++   M      P+ +TY ++I G C++GR+                         
Sbjct: 267 DSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP 326

Query: 216 ----------EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG- 264
                     EDA  LF  MK  GC  N+  Y+AL+ G+C  G ++ A+ L   M ++G 
Sbjct: 327 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGV 386

Query: 265 --------------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALG 292
                                             CSPN+VTY  +I+ +C  G  K+A+ 
Sbjct: 387 FPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML 446

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +++ M   G + N VT +T+IKG+C  GN   A +++D +  GG       Y+ L+    
Sbjct: 447 VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC 506

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  +++ A  LF++M+  G+ P+ +  + +I   C   ++     L E +++ G   +V 
Sbjct: 507 KISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQ 566

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
           +  ++VL+ GL ++N+   A +L + M+++ I+        +++ L K+G   L
Sbjct: 567 T--YNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL 618



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 143/297 (48%), Gaps = 2/297 (0%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + I +      +G   +      + N+  + R    A  VL  M      P+ + YN +I
Sbjct: 373 VAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           + +C  GD   A  +M  M       +++TY ++IKG+C++G    A  +  +M+  GC 
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            +  +Y+ L+ G C++  ME A  L  EM  +G    PN VTYT++I  +C    +  A 
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDG--LCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +L+ M+  GC PN  T + LI G   + N   A +L   ++  G   +   Y++++  L
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
            +      A ++F+KM+  G  P+ L  S +IR L   G+V E   L+ ++E+ G +
Sbjct: 611 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI 667



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 147/357 (41%), Gaps = 38/357 (10%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  K  GC  +V+   V+ +   K    + A  + + M E  + P+ + Y  +I   C
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLC 611

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G    A E+   M      P+++TY S+I+     G++E+A  LF  ++RHG   + +
Sbjct: 612 KNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEI 671

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y  +++     G +E A   LG M K G  C P + TY  +I     KG+  E L    
Sbjct: 672 TYVKMIEAYIMSGKVEHAFNFLGRMIKAG--CQPTLWTYGVLI-----KGLKNEYLLADQ 724

Query: 296 RMEAL-GCAPN-----------RVTI-----------------STLIKGFCVEGNLDEAY 326
           R+ AL    PN            V++                 + L+      G   EA 
Sbjct: 725 RLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEAN 784

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+  +++ G       Y+SL+  L+R + +  A  +F  M   G +        +I  L
Sbjct: 785 ELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICAL 844

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           C   +  E    +E++    +  + D  + +VL+ GL R  +     +    M  +R
Sbjct: 845 CQLHRRKEARITFENMLMRTW--NPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRR 899


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 147/288 (51%), Gaps = 4/288 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V  +M +FDL P+ + YN +I   C  GD   A  L+  M    L  + +TY +++ 
Sbjct: 357 AAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLN 416

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   + E A  L + M+ +      +AY+ L+DG+C+ G ++ A++L+G M K+G   
Sbjct: 417 GLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDG--V 474

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +P+V+TY+S+I  FC  G +K A  I+ RM   G   N++  STLI  FC  GN+ EA +
Sbjct: 475 NPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMK 534

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           +   +   G  +     + LV  L R  +L EAEK    M   G+ P+ +    +I    
Sbjct: 535 VYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYG 594

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             G  L  F  ++D+ K G   S  +  +  LL GLC+  + VEA K 
Sbjct: 595 SIGDPLNAFSFFDDMIKCGQHPSFFT--YGSLLKGLCKGGNLVEAKKF 640



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 152/319 (47%), Gaps = 6/319 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           ++G   +V    ++ N LC +  L  +A  +L++M E    P  + YN ++  +C+KG  
Sbjct: 226 DKGICPNVGTFNILINGLCVEGNL-KKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRY 284

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
            AA EL+  M    +  D+ TY   I   C   R   A  L K M++   + N V Y+ L
Sbjct: 285 KAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTL 344

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++G  + G +  A ++  EM K   D SPN VTY ++I   C  G  +EAL +LD MEA 
Sbjct: 345 INGFVKEGKIGVAAQVFNEMSKF--DLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAA 402

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G   N VT  TL+ G C     + A +L++++     V     Y+ L+  L +   L EA
Sbjct: 403 GLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEA 462

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +L   M   GV PD +  S +I   C  G +     +   + + G +  ++  I+S L+
Sbjct: 463 VQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLV--LNKIIYSTLI 520

Query: 421 LGLCRKNHSVEAAKLARFM 439
              C+  +  EA K+   M
Sbjct: 521 YNFCQHGNVTEAMKVYAVM 539



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 182/380 (47%), Gaps = 19/380 (5%)

Query: 53  VKAKLDSTCVIEVLHRCFPSQSQMGI-RFFIWAALQSSYRHSSFMYNRACEMSRIKQNPS 111
           VKA++  +    + H C     QMGI    I+ AL  +Y   + + +    + R+     
Sbjct: 123 VKARMYDSAKSILRHLC-----QMGIGSKSIFGALMDTYPLCNSIPSVFDLLIRVYLKEG 177

Query: 112 IIIDVVEAYKEEGCV---VSVKMMKVIFNLCEKARLANEAMWVL-RKMPEFDLRPDTIIY 167
           +I   VE ++  G V    SV    +I     K +   E +W L R+M +  + P+   +
Sbjct: 178 MIDYAVETFELVGLVGFKPSVYTCNMILASMVKDK-RTELVWSLFREMSDKGICPNVGTF 236

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N +I   C +G++  A  L+K M      P I+TY +++  +C  GR + A  L   M  
Sbjct: 237 NILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMIC 296

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G  A++  Y+  +D +C      +A  LL +M KE    SPN VTY ++I  F  +G +
Sbjct: 297 KGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEM--ISPNEVTYNTLINGFVKEGKI 354

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
             A  + + M     +PN VT + LI G C  G+ +EA +L+D + A G   +   Y +L
Sbjct: 355 GVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTL 414

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  L + ++ + A++L  +M  + +    +A +V+I  LC  G + E   L  ++ K G 
Sbjct: 415 LNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDG- 473

Query: 408 LSSVDSDI--HSVLLLGLCR 425
              V+ D+  +S L+ G CR
Sbjct: 474 ---VNPDVITYSSLINGFCR 490



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 137/307 (44%), Gaps = 35/307 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+   L +EA+ ++  M +  + PD I Y+++I  FC  G++ +A E++  M   
Sbjct: 449 LIDGLCKNGML-DEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRS 507

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L  + I Y ++I  FC  G + +A  ++ VM  +G  A+    + L+  +CR G +  A
Sbjct: 508 GLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEA 567

Query: 254 LELLGEMEKEG-------GDC--------------------------SPNVVTYTSVIQI 280
            + L  M + G        DC                           P+  TY S+++ 
Sbjct: 568 EKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKG 627

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G + EA   L+R+  +  A + V  +TL+   C  GNL EA  L DK+V    +  
Sbjct: 628 LCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPD 687

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASG-VKPDGLACSVMIRELCLGGQVLEGFCLY 399
              YSSL+  L R  +   A  LF   +  G + P+ +  + ++  L   G     F  +
Sbjct: 688 SYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFF 747

Query: 400 EDIEKIG 406
           E++ K G
Sbjct: 748 EEMMKKG 754



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 137/299 (45%), Gaps = 4/299 (1%)

Query: 141  KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
            KA     A +   +M +    PDT+ +N +I     +G M+ A++    M    + P++ 
Sbjct: 736  KAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLA 795

Query: 201  TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            TY  ++ GF     L     L+  M R G   + + + +L+ G+ + G  +  ++LLG+M
Sbjct: 796  TYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKM 855

Query: 261  EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              EG     +  T+  +I  +   G M++A  +++ M  LG  P+R T + +  G   + 
Sbjct: 856  IMEG--TLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKS 913

Query: 321  NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
               E+  ++ +++  G +     Y +L+  + R   ++ A KL  +M A G     +A S
Sbjct: 914  AFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAES 973

Query: 381  VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
             M+R L   G+  +   + + + ++  L ++ +   + L+   CR     EA KL   M
Sbjct: 974  AMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIAT--FTTLMHRFCRDAKIAEALKLKGVM 1030



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 152/357 (42%), Gaps = 41/357 (11%)

Query: 124  GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
            G V SV    ++   C+   L +EA+ +  KM + ++ PD+  Y++++   C KG  + A
Sbjct: 649  GAVDSVMYNTLLAETCKSGNL-HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTA 707

Query: 184  DELM-KGMGLIDLYPDIITYVSMIKGFCNAGR-------------------------LED 217
              L    MG   L+P+ + Y  ++ G   AG                          + D
Sbjct: 708  VCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIID 767

Query: 218  ACG----------LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            +C            F  M+  G   NL  Y+ LL G  +  ++ R L L   M +EG   
Sbjct: 768  SCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREG--I 825

Query: 268  SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             P+ +T+ S+I      G+    + +L +M   G   ++ T + LI  +   G + +A+ 
Sbjct: 826  FPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFD 885

Query: 328  LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
            L++ +   G       Y+ +   L +    +E+  +  +ML +GV P       +I  +C
Sbjct: 886  LVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMC 945

Query: 388  LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
              G +   F L +++E +GF S   ++  S ++ GL     + +A  +   ML+ R+
Sbjct: 946  RVGDIQGAFKLKDEMEALGFGSHEVAE--SAMVRGLLHCGKTEDAMLVLDHMLRMRL 1000



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 127/293 (43%), Gaps = 6/293 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++ +LC   +L  EA   L  M    L P++I Y+ +I  +   GD + A      M   
Sbjct: 554 LVSSLCRDGKLG-EAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKC 612

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             +P   TY S++KG C  G L +A      +     A + V Y+ LL   C+ G++  A
Sbjct: 613 GQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEA 672

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTISTL 312
           + L  +M +   +  P+  TY+S++   C KG    A+ +       G   PN V  + L
Sbjct: 673 VALFDKMVQN--NVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCL 730

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           + G    G+   A+   ++++  G+      +++++    R  ++ +A   FS M   GV
Sbjct: 731 VDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGV 790

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            P+    ++++        +L    LY  + + G     D      L+LGL +
Sbjct: 791 CPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFP--DKLTFHSLILGLSK 841



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 149/370 (40%), Gaps = 8/370 (2%)

Query: 109  NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
            +P       E   ++G          I + C +     +A      M  + + P+   YN
Sbjct: 739  HPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYN 798

Query: 169  NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
             ++  F +K  ++    L   M    ++PD +T+ S+I G   +G  +    L   M   
Sbjct: 799  ILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIME 858

Query: 229  GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
            G  A+   ++ L++     G M +A +L+  M   G    P+  TY  +      K   +
Sbjct: 859  GTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLG--VFPDRDTYNHIFNGLNKKSAFR 916

Query: 289  EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            E+  +L  M   G  P      TLI G C  G++  A++L D++ A G  S     S++V
Sbjct: 917  ESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMV 976

Query: 349  VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
              L+   + ++A  +   ML   + P     + ++   C   ++ E   L   +E  G  
Sbjct: 977  RGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGL- 1035

Query: 409  SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIWLQGPYVDKIVEHLKKSGDE 464
              +D   ++VL++G+C    S  A +L   M  +     I      VD I         E
Sbjct: 1036 -KLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGE 1094

Query: 465  ELITNLPKIG 474
            +L+T+L + G
Sbjct: 1095 KLLTDLQERG 1104



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 121/277 (43%), Gaps = 2/277 (0%)

Query: 110  PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
            P + + ++     EG +       ++ N   ++    +A  ++  M    + PD   YN+
Sbjct: 845  PDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNH 904

Query: 170  VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
            +     +K     +  ++  M    + P    Y+++I G C  G ++ A  L   M+  G
Sbjct: 905  IFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALG 964

Query: 230  CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              ++ VA SA++ G+   G  E A+ +L  M +      P + T+T+++  FC    + E
Sbjct: 965  FGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRM--RLLPTIATFTTLMHRFCRDAKIAE 1022

Query: 290  ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
            AL +   ME  G   + V  + LI G C  G+   A++L +++       +   Y+ LV 
Sbjct: 1023 ALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVD 1082

Query: 350  ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
             +     L + EKL + +   G+   G +   + +EL
Sbjct: 1083 AISAANNLIQGEKLLTDLQERGLISWGGSTQHLDKEL 1119



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 2/218 (0%)

Query: 135  IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
            IFN   K     E+  VL +M E  + P    Y  +I   C  GD+  A +L   M  + 
Sbjct: 905  IFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALG 964

Query: 195  LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
                 +   +M++G  + G+ EDA  +   M R      +  ++ L+   CR   +  AL
Sbjct: 965  FGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEAL 1024

Query: 255  ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            +L G ME  G     +VV Y  +I   C  G    A  + + M      PN  T + L+ 
Sbjct: 1025 KLKGVMELCG--LKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVD 1082

Query: 315  GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
                  NL +  +L+  +   G +S GG    L  EL 
Sbjct: 1083 AISAANNLIQGEKLLTDLQERGLISWGGSTQHLDKELT 1120


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 213/474 (44%), Gaps = 74/474 (15%)

Query: 63  IEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRA-CEMSRIKQNPSIIIDVVEAYK 121
           I ++  C   ++      F+    QS  R   F Y+     +SR+    +++ D      
Sbjct: 149 IHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVM-DRYHRML 207

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
            EG   ++ +   + N LC+   +A +A  +++K+ E ++ PDT  Y ++I   C K D+
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVA-DAETIMKKVFESEMSPDTFTYTSMILGHCRKHDL 266

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL------------------------- 215
            +A ++   M      P+ +TY ++I G C++GR+                         
Sbjct: 267 DSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGP 326

Query: 216 ----------EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG- 264
                     EDA  LF  MK  GC  N+  Y+AL+ G+C  G ++ A+ L   M ++G 
Sbjct: 327 IIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGV 386

Query: 265 --------------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALG 292
                                             CSPN+VTY  +I+ +C  G  K+A+ 
Sbjct: 387 FPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAML 446

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +++ M   G + N VT +T+IKG+C  GN   A +++D +  GG       Y+ L+    
Sbjct: 447 VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC 506

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  +++ A  LF++M+  G+ P+ +  + +I   C   ++     L E +++ G   +V 
Sbjct: 507 KISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQ 566

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
           +  ++VL+ GL ++N+   A +L + M+++ I+        +++ L K+G   L
Sbjct: 567 T--YNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL 618



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 143/297 (48%), Gaps = 2/297 (0%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + I +      +G   +      + N+  + R    A  VL  M      P+ + YN +I
Sbjct: 373 VAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           + +C  GD   A  +M  M       +++TY ++IKG+C++G    A  +  +M+  GC 
Sbjct: 433 KGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            +  +Y+ L+ G C++  ME A  L  EM  +G    PN VTYT++I  +C    +  A 
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMVDDG--LCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +L+ M+  GC PN  T + LI G   + N   A +L   ++  G   +   Y++++  L
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
            +      A ++F+KM+  G  P+ L  S +IR L   G+V E   L+ ++E+ G +
Sbjct: 611 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLI 667



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 147/357 (41%), Gaps = 38/357 (10%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  K  GC  +V+   V+ +   K    + A  + + M E  + P+ + Y  +I   C
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLC 611

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G    A E+   M      P+++TY S+I+     G++E+A  LF  ++RHG   + +
Sbjct: 612 KNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEI 671

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y  +++     G +E A   LG M K G  C P + TY  +I     KG+  E L    
Sbjct: 672 TYVKMIEAYIMSGKVEHAFNFLGRMIKAG--CQPTLWTYGVLI-----KGLKNEYLLADQ 724

Query: 296 RMEAL-GCAPN-----------RVTI-----------------STLIKGFCVEGNLDEAY 326
           R+ AL    PN            V++                 + L+      G   EA 
Sbjct: 725 RLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEAN 784

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+  +++ G       Y+SL+  L+R + +  A  +F  M   G +        +I  L
Sbjct: 785 ELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICAL 844

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           C   +  E    +E++    +  + D  + +VL+ GL R  +     +    M  +R
Sbjct: 845 CQLHRRKEARITFENMLMRTW--NPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRR 899


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 184/403 (45%), Gaps = 43/403 (10%)

Query: 84  AALQSSYRHS----SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139
           A   + +RHS    S M +R    +  +    ++  +    KEE C ++  +   I    
Sbjct: 40  AEYTNGFRHSHQTFSLMISRLVSANHFRLAEELLCRM----KEEKCNITEDIFLSICRAY 95

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
            +     +A+ V RKM E++  P    Y  V  +   +  +  A    + M  + + P +
Sbjct: 96  GRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSV 155

Query: 200 ITYVSMIKGFC-NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            +   +IK  C N+G ++ A  +F+ M   GC  +   Y  L++G+CRLG +  A EL  
Sbjct: 156 ASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFK 215

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EME +   CSP VVTYTS+I   C    +  A+ +L+ M + G  PN  T S+L+ G C 
Sbjct: 216 EMETKA--CSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCK 273

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G    A +L+D +V+   + +   YS+LV  L +  +L+EA ++  +M   G++PD   
Sbjct: 274 SGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDA-- 331

Query: 379 CSVMIRELCLGGQVLEGFCLYEDI----EKIGFLS--------------SVDSDIHSVLL 420
                    L G+++ GFC   DI    E   FL               S+   IH++++
Sbjct: 332 --------GLYGKIISGFC---DICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVV 380

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            GLC + H   A +L   M  + I +     D +V +    GD
Sbjct: 381 QGLCTE-HPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGD 422



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 141/289 (48%), Gaps = 9/289 (3%)

Query: 121 KEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           +E G   SV  + V+   LC+ +   + A+ + R+MP     PD+  Y  +I   C  G 
Sbjct: 147 REMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGK 206

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           +  A EL K M      P ++TY S+I G C +  L+ A  L + M   G   N+  YS+
Sbjct: 207 IGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSS 266

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+DG C+ G   RALELL  M        PN++TY++++   C +G ++EA+ ILDRM+ 
Sbjct: 267 LMDGHCKSGCSSRALELLDMMVSRRH--LPNMITYSTLVHGLCKEGKLQEAVEILDRMKL 324

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS------SLVVELVR 353
            G  P+      +I GFC      EA   +D++V GG   +   +S      ++VV+ + 
Sbjct: 325 QGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLC 384

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           T+    A +L+  M   G+  D      ++   C  G + +   L +++
Sbjct: 385 TEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEM 433



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 140/342 (40%), Gaps = 59/342 (17%)

Query: 32  AERFYTHLQKN--PNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSS 89
           A RFY ++++   P ++      +KA   ++  ++   R F      G           S
Sbjct: 139 ALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRG-------CPPDS 191

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEA 148
           Y + + + N  C + +I +   +  ++    + + C  +V     +I  LC+   L + A
Sbjct: 192 YTYGTLI-NGLCRLGKIGEAKELFKEM----ETKACSPTVVTYTSLIHGLCQSKDL-DSA 245

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
           + +L +M    ++P+   Y++++   C+ G    A EL+  M      P++ITY +++ G
Sbjct: 246 IRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHG 305

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C  G+L++A  +   MK  G   +   Y  ++ G C +     A   L EM    G  S
Sbjct: 306 LCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVL--GGIS 363

Query: 269 PNVVTYT-----------------------------------------SVIQIFCGKGMM 287
           PN +T++                                         S++  FC KG +
Sbjct: 364 PNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDL 423

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
            +A  ++D M   GC P+ VT + ++  F     + E+ +L+
Sbjct: 424 HKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRESAELV 465


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 143/266 (53%), Gaps = 5/266 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMIKGFCNAGRLEDACG 220
           P+ + Y+ ++   C  G +  A +L + M   D + PD +TY  +I GFC  G+ + A  
Sbjct: 267 PNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARN 326

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + + MK +GC  N+  YSAL+DG+C++G +E A  +L E++  G    P+ VTYTS+I  
Sbjct: 327 VIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIK--GSGLKPDAVTYTSLINF 384

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G   EA+ +L+ M+  GC  + VT + L+ G C EG  +EA  +++K+   G   +
Sbjct: 385 LCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLN 444

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
            G Y  ++  L +   LK A++L   ML  G +P     + ++  LC  G V +      
Sbjct: 445 KGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALF 504

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRK 426
           D+ ++GF   +++    VL+  +CR+
Sbjct: 505 DLVEMGFQPGLET--WEVLIGLICRE 528



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 131/266 (49%), Gaps = 4/266 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           LC   R+  EA  +  +M   D + PD + YN +I  FC  G    A  +++ M     Y
Sbjct: 279 LCRNGRVK-EAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCY 337

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P++  Y +++ G C  G+LEDA G+   +K  G   + V Y++L++ +CR G  + A+EL
Sbjct: 338 PNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIEL 397

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EM++ G  C  + VT+  ++   C +G  +EAL +++++   G   N+ +   ++   
Sbjct: 398 LEEMKENG--CQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSL 455

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
             +  L  A +L+  ++  G        + L+V L +   + +A      ++  G +P  
Sbjct: 456 TQKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPGL 515

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDI 402
               V+I  +C   ++L  F L +++
Sbjct: 516 ETWEVLIGLICRERKLLYVFELLDEL 541



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N+  ++ L+   C+ G ++ A E++ EM +      PN+VTY++++   C  G +KEA  
Sbjct: 232 NVCVFNILVKYHCKNGDLDSAFEIVEEM-RNSEFSYPNLVTYSTLMDGLCRNGRVKEAFD 290

Query: 293 ILDRMEALG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
           + + M +     P+ +T + LI GFC  G  D A  +I  + + G   +   YS+LV  L
Sbjct: 291 LFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGL 350

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +  +L++A+ + +++  SG+KPD +  + +I  LC  G+  E   L E++++ G     
Sbjct: 351 CKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENG--CQA 408

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL-QGPY 450
           DS   +VLL GLCR+    EA  +   + ++ ++L +G Y
Sbjct: 409 DSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSY 448



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 4/229 (1%)

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           P    +V++  K  GC  +V     + + LC+  +L  +A  VL ++    L+PD + Y 
Sbjct: 321 PDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLE-DAKGVLAEIKGSGLKPDAVTYT 379

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           ++I   C  G    A EL++ M       D +T+  ++ G C  G+ E+A  + + + + 
Sbjct: 380 SLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQ 439

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   N  +Y  +L+ + +   ++RA ELLG M + G    P+  T   ++   C  GM+ 
Sbjct: 440 GVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRG--FQPHYATSNELLVCLCKAGMVD 497

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +A   L  +  +G  P   T   LI   C E  L   ++L+D++V   +
Sbjct: 498 DAAVALFDLVEMGFQPGLETWEVLIGLICRERKLLYVFELLDELVVTNT 546



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 4/124 (3%)

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAEK 362
           PN    + L+K  C  G+LD A+++++++     S  +   YS+L+  L R  R+KEA  
Sbjct: 231 PNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFD 290

Query: 363 LFSKMLA-SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           LF +M++   + PD L  +V+I   C GG+      + + ++  G   +V +  +S L+ 
Sbjct: 291 LFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYN--YSALVD 348

Query: 422 GLCR 425
           GLC+
Sbjct: 349 GLCK 352


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 221/481 (45%), Gaps = 56/481 (11%)

Query: 33  ERFYT----HLQKNPN------NIEKTLATVK---------AKLDSTCVIEVLHRC---- 69
           E+F++    H +KN N      N   T+A++            + S  V  V+ +C    
Sbjct: 62  EKFHSLIKSHQRKNTNPDPISPNPHYTIASLSFDFSQISSADSVSSAIVRRVIEKCGGVR 121

Query: 70  ----FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGC 125
               FP      + FF WA     + HS   Y    +++   +   +   +++  K    
Sbjct: 122 HGIPFPQT----LAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNV 177

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
            + V+   ++     KA LA EA+    +M ++  +PD I ++ VI    +K   I A  
Sbjct: 178 EIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQS 237

Query: 186 LMKGMGLIDLY-PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
                 L D + PD++ Y S++ G+C AG + +A  +F  MK  G   N+  YS ++D +
Sbjct: 238 FFDS--LKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDAL 295

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           CR G + RA ++  EM   G  C PN +T+ +++++    G  ++ L + ++M+ LGC P
Sbjct: 296 CRSGQITRAHDVFSEMIDVG--CDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPP 353

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG------GCYSSLVVELVRTKRLK 358
           + +T + LI+  C + NL+EA ++++ V  G ++++       GC S L         + 
Sbjct: 354 DAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKL-------GDVN 406

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
            A ++F+KM     +P+ +  ++++R             L +++++       +++ + V
Sbjct: 407 SAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEI--EPNANTYRV 464

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQG-PYVDKIVEHLKKSGD----EELITNLPKI 473
           L+   C   H   A    + M++++      P  + +++ L+K+G     EEL+  +   
Sbjct: 465 LISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNR 524

Query: 474 G 474
           G
Sbjct: 525 G 525


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 141/264 (53%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 142 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 201

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++ A GLF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 202 GLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 259

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P++ T +TLI G C EG+LD A++
Sbjct: 260 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE 319

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    ++++ E C
Sbjct: 320 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFC 379

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G   SV
Sbjct: 380 KKGDVWKGSKLLKEMQRDGHAPSV 403



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 112/240 (46%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    +  +L+
Sbjct: 52  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKL----KYFKLV 107

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 108 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 167

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   ++A G       YS L+  L +  ++  A  LF +ML  G+ P+
Sbjct: 168 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPN 227

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 228 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP--DLITYNTLIYGLCKKGDLKQAHDL 285



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            V    +I  LC++ R + +A  +LR+M    L+PDT  Y  ++  FC+KGD+    +L+
Sbjct: 333 DVAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLL 391

Query: 188 KGMGLIDLYPDIITYVSMIKG 208
           K M      P ++TY  ++ G
Sbjct: 392 KEMQRDGHAPSVVTYNVLMNG 412


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 173/347 (49%), Gaps = 4/347 (1%)

Query: 95  FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           F YN        +++   + ++++  ++E  V SV    ++      +    EA  +  +
Sbjct: 253 FTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEE 312

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E ++  D  +Y+++I      G+M  A  L   M   D+ P+  TY ++I G C AG+
Sbjct: 313 MREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQ 372

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +E A  L   M+  G   NLV ++  +DG CR G M+ AL L   MEK+G   + +V TY
Sbjct: 373 MEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKG--INADVFTY 430

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +    C      EA  IL+ M   G  PN VT +  I+ +C EGNL EA +L   +  
Sbjct: 431 NILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEK 490

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G V +   Y++L+    + +++K+A K+ S+M+  G+ PD    S +I   C+ G+V E
Sbjct: 491 KGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDE 550

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
              L+ ++   G   +V +  ++ ++ GL ++  + EA KL   M+K
Sbjct: 551 ALKLFNEMRLKGITRNVAT--YTSMISGLSKEGRADEAFKLYDEMMK 595



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 144/283 (50%), Gaps = 4/283 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++P+   YN ++  +  + D    DE++K M    +   + TY  +I+ + ++G +E+A 
Sbjct: 248 VKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAE 307

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +F+ M+      ++  YS+++    RLG+M+RA  L  EM +   D  PN  TY ++I 
Sbjct: 308 KIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQR--DIVPNAHTYGALIG 365

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G M+ A  +L  M++ G   N V  +T + G+C  G +DEA +L   +   G  +
Sbjct: 366 GVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINA 425

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y+ L   L +  R  EA+ + + M+  GVKP+ +  ++ I   C  G + E   L+
Sbjct: 426 DVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLF 485

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            D+EK G + ++ +  ++ L+   C+K    +A K+   M+ K
Sbjct: 486 RDMEKKGEVPNIIT--YNTLIDAYCKKEKVKQAHKIKSEMINK 526



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 110/213 (51%), Gaps = 2/213 (0%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           + +I+N  +  +C +G M  A  L   M    +  D+ TY  +  G C   R ++A  + 
Sbjct: 391 NLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCIL 450

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   N+V ++  ++  C+ G++  A  L  +MEK+G    PN++TY ++I  +C
Sbjct: 451 NSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGE--VPNIITYNTLIDAYC 508

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            K  +K+A  I   M   G  P+  T S+LI G C+ G +DEA +L +++   G   +  
Sbjct: 509 KKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVA 568

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            Y+S++  L +  R  EA KL+ +M+  G+ PD
Sbjct: 569 TYTSMISGLSKEGRADEAFKLYDEMMKIGLIPD 601



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 113/220 (51%), Gaps = 8/220 (3%)

Query: 134 VIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           VIFN      C + ++ +EA+ +   M +  +  D   YN +    C+      A  ++ 
Sbjct: 393 VIFNTTMDGYCRRGKM-DEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILN 451

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P+++T+   I+ +C  G L +A  LF+ M++ G   N++ Y+ L+D  C+  
Sbjct: 452 SMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKE 511

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +++A ++  EM  +G    P++ TY+S+I   C  G + EAL + + M   G   N  T
Sbjct: 512 KVKQAHKIKSEMINKG--LLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVAT 569

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            +++I G   EG  DEA++L D+++  G +     ++SLV
Sbjct: 570 YTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLV 609



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 3/179 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+  R  +EA  +L  M E  ++P+ + +   I ++C++G++  A+ L + M      P
Sbjct: 437 LCKLHRY-DEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVP 495

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +IITY ++I  +C   +++ A  +   M   G   +L  YS+L+ G C +G ++ AL+L 
Sbjct: 496 NIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLF 555

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
            EM  +G   + NV TYTS+I     +G   EA  + D M  +G  P+    ++L+  F
Sbjct: 556 NEMRLKG--ITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSF 612



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 12/167 (7%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C+K ++  +A  +  +M    L PD   Y+++I   C  G +  A +L   M L  +  +
Sbjct: 508 CKKEKV-KQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRN 566

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           + TY SMI G    GR ++A  L+  M + G   +   +++L      +GS  + L   G
Sbjct: 567 VATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSL------VGSFHKPLTHAG 620

Query: 259 EMEKEGGDCSP-----NVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
              ++  D        N  T+  +     G+  ++E  G+   +E +
Sbjct: 621 LDIQKASDSDSVLRRENCCTWPLISAEHDGQDNIRERFGVASIVEKI 667


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 148/275 (53%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD  TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+   M  +    
Sbjct: 221 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G  L +++++ G + SV +  ++VL+ G
Sbjct: 399 KKGDVWKGSRLLKEMQRNGHVPSVVT--YNVLMNG 431



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 113/215 (52%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M    L P+ + +  +I   C+KG +  A E+ K M   
Sbjct: 218 LINGLCKESKM-DDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQ 276

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L+ A  L   M   G   + + Y+ L+DG C+ G ++ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTA 336

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E    M +E  +   + V YT++I   C +G   +A  +L  M ++G  P+  T + +I
Sbjct: 337 FEHRKRMIQE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMII 394

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G V S   Y+ L+
Sbjct: 395 NEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLM 429



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 114/245 (46%), Gaps = 4/245 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L   +      
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ + G   S  +  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 131 EEILECGYPAS--LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+LDE ++L   ++A G       YS L+  L +  ++ +A +LF +ML  G+ P+G+
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 248

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L  
Sbjct: 249 TFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLP--DLITYNTLIYGLCKKGDLKQANDLID 306

Query: 438 FMLKK 442
            M+ K
Sbjct: 307 EMVMK 311



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC++ R + +A  +LR+M    L+PDT  Y  +I  FC+KGD+     L+K
Sbjct: 353 VAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLK 411

Query: 189 GMGLIDLYPDIITYVSMIKG 208
            M      P ++TY  ++ G
Sbjct: 412 EMQRNGHVPSVVTYNVLMNG 431


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 145/289 (50%), Gaps = 16/289 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC  +++  +A  + ++M    + PD  +Y  +I  FC+ G +  A      M  
Sbjct: 227 KVIGYLCNASKV-EKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMER 285

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P+++TY ++I  +  + ++  A  ++++M   GC  N+V Y+AL+DG+C+ G +E+
Sbjct: 286 DGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEK 345

Query: 253 ALELLGEMEKE---------------GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           A ++   M+KE               G    PNV TY +++   C    +KEA  +L  M
Sbjct: 346 ASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSM 405

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
              GC PN V    LI G C  G LDEA ++   ++  G   +   YSSL+  L + KRL
Sbjct: 406 SVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRL 465

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
             A K+ SKML +   P+ +  + MI  LC  G+  E + L   +E+ G
Sbjct: 466 DLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKG 514



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 128/261 (49%), Gaps = 19/261 (7%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           +N  R  C  G    A  +++ M      PD  TY  +I   CNA ++E A  LF+ MKR
Sbjct: 191 SNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKR 250

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
           +G A ++  Y+ L+D  C+ G +E+A     EME++G  C+PNVVTYT++I  +     +
Sbjct: 251 NGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDG--CAPNVVTYTALIHAYLKSRKV 308

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID----------------K 331
            +A  + + M + GC PN VT + LI G C  G +++A Q+                  +
Sbjct: 309 SKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFR 368

Query: 332 VVAGGSVSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           VV G S       Y +LV  L +  ++KEA  L   M   G +P+ +    +I   C  G
Sbjct: 369 VVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAG 428

Query: 391 QVLEGFCLYEDIEKIGFLSSV 411
           ++ E   ++  + + G+  +V
Sbjct: 429 KLDEAQEVFTTMLECGYDPNV 449



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 146/301 (48%), Gaps = 19/301 (6%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           + +GC  +V     + +   K+R  ++A  V   M      P+ + Y  +I   C+ G +
Sbjct: 284 ERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKI 343

Query: 181 IAADELMKGMGL-------IDLY----------PDIITYVSMIKGFCNAGRLEDACGLFK 223
             A ++ K M         +D++          P++ TY +++ G C A ++++A  L K
Sbjct: 344 EKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLK 403

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M   GC  N V Y AL+DG C+ G ++ A E+   M + G D  PNV TY+S+I     
Sbjct: 404 SMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYD--PNVYTYSSLIDRLFK 461

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
              +  AL +L +M    CAPN V  + +I G C  G  DEAY+L+  +   G   +   
Sbjct: 462 DKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVT 521

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y++++    ++ R+++  +L  +M + G  P+ +   V+I   C  G + E   L E+++
Sbjct: 522 YTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMK 581

Query: 404 K 404
           +
Sbjct: 582 Q 582



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 157/360 (43%), Gaps = 28/360 (7%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           CE S  ++     +D +   +   C+ +V   +++   C           +L  M     
Sbjct: 53  CEASLFEE----AMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGC 108

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR-----L 215
            P   I+N+++  +C  GD   A +L+K M      P  + Y  +I G C++       L
Sbjct: 109 YPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVL 168

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           + A   +  M   G   N V  S     +C +G  E+A  ++ EM  +G    P+  TY+
Sbjct: 169 DLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGF--IPDTSTYS 226

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            VI   C    +++A  +   M+  G AP+    +TLI  FC  G +++A    D++   
Sbjct: 227 KVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERD 286

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   Y++L+   ++++++ +A +++  ML+ G  P+ +  + +I  LC  G++ + 
Sbjct: 287 GCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKA 346

Query: 396 FCLYEDIEKIGFLSSVDSDIH----------------SVLLLGLCRKNHSVEAAKLARFM 439
             +Y+ ++K   +   D D+H                  L+ GLC+     EA  L + M
Sbjct: 347 SQIYKIMKKEN-VEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSM 405



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 155/342 (45%), Gaps = 13/342 (3%)

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           +LC+  +   EA+ +L K    +  PDT++Y  +I   CE      A + +  M      
Sbjct: 19  SLCKSGKW-REALSLLEKE---EFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCL 74

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+++TY  ++ G  N  +L     +  +M   GC  +   +++L+   CR G    A +L
Sbjct: 75  PNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKL 134

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFC-----GKGMMKEALGILDRMEALGCAPNRVTIST 311
           L +M + G  C P  V Y  +I   C     GK ++  A      M   G   N+V IS 
Sbjct: 135 LKKMVQCG--CQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISN 192

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
             +  C  G  ++AY +I ++++ G +     YS ++  L    ++++A +LF +M  +G
Sbjct: 193 FSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNG 252

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           + PD    + +I   C  G + +    ++++E+ G   +V +  ++ L+    +     +
Sbjct: 253 IAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVT--YTALIHAYLKSRKVSK 310

Query: 432 AAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473
           A ++   ML K           +++ L K+G  E  + + KI
Sbjct: 311 ANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKI 352



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 111/253 (43%), Gaps = 33/253 (13%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ VL KM E    P+ +IY  +I   C+ G    A +LM  M      P+++TY +MI 
Sbjct: 468 ALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMID 527

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK----- 262
           GF  +GR+E    L + M   GCA N V Y  L++  C  G ++ A +LL EM++     
Sbjct: 528 GFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPR 587

Query: 263 ---------EG-----------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
                    EG                  D  P    Y  +I  F   G ++ AL + + 
Sbjct: 588 HVAGYRKVIEGFNREFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEE 647

Query: 297 MEALG--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           + +     A N+    TLI+   +    D+A++L   +++ GS+        L+  L+R 
Sbjct: 648 LSSFSPFSAANQNIHITLIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLLRV 707

Query: 355 KRLKEAEKLFSKM 367
            R +EA +L   +
Sbjct: 708 NRWEEALQLLDSI 720


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 172/332 (51%), Gaps = 10/332 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L +M       + +++  +++  C+ G ++ A E  + M   D  PD++TY +++ 
Sbjct: 28  AIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAK-DCAPDVMTYTALVH 86

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             C AG+ ++A G+ + M   GCA + V +S L+DG+C+ GS E+A  +L ++ + G   
Sbjct: 87  ALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGN 146

Query: 268 SPNVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           S     + ++IQ  C K   ++ A  +L  + A G  P  +  + +I GFC   +LD AY
Sbjct: 147 SD--AAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAY 204

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L++ ++  G V +   ++ L+  L +  R+ EA++L  KM+  G  P+ +  S +I  L
Sbjct: 205 KLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGL 264

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK---- 442
           C  GQV + + L++ +E+     +V +  H++L+ GLC+     EA +L   M +     
Sbjct: 265 CKQGQVDDAYELFQLMERRNCPPNVVT--HNILIDGLCKAKRIEEARQLYHRMRETGCAP 322

Query: 443 RIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
            I      +D + +  +     +L   +P+ G
Sbjct: 323 DIITYNSLIDGLCKSFQVDEAFQLFQTIPESG 354



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 157/303 (51%), Gaps = 5/303 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K      A  VL  +      P  +++N VI  FC+  D+ +A +L++ M   
Sbjct: 154 IIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEK 213

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P++ T+  +I G C A R+ +A  L + M   GC+ N+V YS +++G+C+ G ++ A
Sbjct: 214 GCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDA 273

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL   ME+   +C PNVVT+  +I   C    ++EA  +  RM   GCAP+ +T ++LI
Sbjct: 274 YELFQLMERR--NCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLI 331

Query: 314 KGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
            G C    +DEA+QL   +   G S ++   YS+L        R+ +A ++FS ++  G 
Sbjct: 332 DGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGF 391

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD    + +I E C   + +E   L E++   GF   V++   S +L GL   NH+  A
Sbjct: 392 SPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNT--LSAVLGGLFEGNHTERA 449

Query: 433 AKL 435
            +L
Sbjct: 450 IQL 452



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 135/245 (55%), Gaps = 6/245 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+  TY  +I+GF +AG L+ A  L + MK +G   N V ++ L+ G+C  G +  ALE 
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
              M K   DC+P+V+TYT+++   C  G   EA G+L  M A GCAP+ VT STLI G 
Sbjct: 67  FRAMAK---DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGL 123

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV-RTKRLKEAEKLFSKMLASGVKPD 375
           C  G+ ++A+++++ V+  G  +S   + +++  L  +   ++ A K+   ++A G  P 
Sbjct: 124 CKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPT 183

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            L  +++I   C    +   + L E + + G + +V +   ++L+ GLC+ N   EA +L
Sbjct: 184 VLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFT--FTILITGLCKANRVGEAQQL 241

Query: 436 ARFML 440
              M+
Sbjct: 242 LEKMV 246



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 169/335 (50%), Gaps = 16/335 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC-----EKGDMIAADELMK 188
           ++  LC+  +  +EA  +LR+M      PDT+ ++ +I   C     E+   +  D + +
Sbjct: 84  LVHALCKAGKF-DEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQR 142

Query: 189 GMGLIDLYPDIITYVSMIKGFCNA-GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           GMG  D       + ++I+  CN    +E A  +  V+   G    ++ ++ +++G C+ 
Sbjct: 143 GMGNSD-----AAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKA 197

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             ++ A +LL  M ++G  C PNV T+T +I   C    + EA  +L++M   GC+PN V
Sbjct: 198 KDLDSAYKLLEVMIEKG--CVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVV 255

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T ST+I G C +G +D+AY+L   +       +   ++ L+  L + KR++EA +L+ +M
Sbjct: 256 TYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRM 315

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
             +G  PD +  + +I  LC   QV E F L++ I + G +S+ ++  +S L  G     
Sbjct: 316 RETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESG-VSAANAVTYSTLFHGYAALG 374

Query: 428 HSVEAAKLARFMLKKRIWLQ-GPYVDKIVEHLKKS 461
              +A ++   ++ K        Y   I+E+ K S
Sbjct: 375 RMADACRIFSMLVDKGFSPDLATYTSLILEYCKTS 409



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 169/344 (49%), Gaps = 8/344 (2%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +G   +V M  ++ N   KA+  + A  +L  M E    P+   +  +I   C+   +  
Sbjct: 178 KGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGE 237

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +L++ M      P+++TY ++I G C  G+++DA  LF++M+R  C  N+V ++ L+D
Sbjct: 238 AQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILID 297

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG- 301
           G+C+   +E A +L   M + G  C+P+++TY S+I   C    + EA  +   +   G 
Sbjct: 298 GLCKAKRIEEARQLYHRMRETG--CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 355

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
            A N VT STL  G+   G + +A ++   +V  G       Y+SL++E  +T R  E  
Sbjct: 356 SAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVV 415

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +L  +M + G  P     S ++  L  G        L++ +   G   + D+ I+++++ 
Sbjct: 416 ELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARG--CTDDALIYNLVVE 473

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGP---YVDKIVEHLKKSG 462
           G+ R +   +A  +   ++ KR     P    VD +VE L + G
Sbjct: 474 GMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVG 517



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 179/408 (43%), Gaps = 51/408 (12%)

Query: 115 DVVEAYK------EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           D+  AYK      E+GCV +V    ++     KA    EA  +L KM      P+ + Y+
Sbjct: 199 DLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYS 258

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            VI   C++G +  A EL + M   +  P+++T+  +I G C A R+E+A  L+  M+  
Sbjct: 259 TVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRET 318

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           GCA +++ Y++L+DG+C+   ++ A +L   +  E G  + N VTY+++   +   G M 
Sbjct: 319 GCAPDIITYNSLIDGLCKSFQVDEAFQLFQTI-PESGVSAANAVTYSTLFHGYAALGRMA 377

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFC------------------------------- 317
           +A  I   +   G +P+  T ++LI  +C                               
Sbjct: 378 DACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVL 437

Query: 318 ---VEGNLDE-AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--- 370
               EGN  E A QL D + A G       Y+ +V  + R  +  +A  +  +++     
Sbjct: 438 GGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDR 497

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
              P   A   ++  LC  G+  +   L   + + GF ++V S  ++ LL GL R     
Sbjct: 498 KFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSS--YNGLLSGLSRLQRWD 555

Query: 431 EAAKLARFMLKKRIWLQGPYVDKIVEHL----KKSGDEELITNLPKIG 474
           EA ++   M+      +   V+ ++  L    K     EL+  + K+G
Sbjct: 556 EATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLG 603



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 17/198 (8%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID---------LYPD 198
           A+ +   M       D +IYN V+        M  A +  K + +++           P 
Sbjct: 449 AIQLFDSMAARGCTDDALIYNLVVE------GMARASKHNKALAVLEQVIDKRDRKFNPS 502

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
                ++++  C  GR +DA  L   M   G AA + +Y+ LL G+ RL   + A ++  
Sbjct: 503 SSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFE 562

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
            M   G   +P + T   VI   C    + +A  ++ RM  LGC P+  T +TLI G+C 
Sbjct: 563 AMVSAGP--APEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCK 620

Query: 319 EGNLDEAYQLIDKVVAGG 336
            G  D A +L++++   G
Sbjct: 621 SGRADLARKLLEEMTEAG 638



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 3/167 (1%)

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PN  TY  +I+ F   G +  A+ +L+ M++ G   N V  +TL+KG C  G + EA 
Sbjct: 5   CMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEAL 64

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +   + +A         Y++LV  L +  +  EA+ +  +M+A G  PD +  S +I  L
Sbjct: 65  EHF-RAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGL 123

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           C  G   + F + ED+ + G  +S D+   +++   LC K +SVE A
Sbjct: 124 CKFGSEEQAFRVLEDVIQRGMGNS-DAAFETIIQR-LCNKYNSVELA 168



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 36/250 (14%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD   Y ++I  +C+    +   EL++ M      P + T  +++ G       E A  L
Sbjct: 393 PDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQL 452

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE-MEKEGGDCSPNVVTYTSVIQI 280
           F  M   GC  + + Y+ +++G+ R     +AL +L + ++K     +P+     ++++ 
Sbjct: 453 FDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVES 512

Query: 281 FCGKGMMKEALGILDRM--------------------------------EAL---GCAPN 305
            C  G   +A  +L +M                                EA+   G AP 
Sbjct: 513 LCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPE 572

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
             T++ +I   C    +D+AY+L+ ++   G        ++L+    ++ R   A KL  
Sbjct: 573 ISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLE 632

Query: 366 KMLASGVKPD 375
           +M  +G++P+
Sbjct: 633 EMTEAGLEPN 642



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 84/198 (42%), Gaps = 5/198 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM---PEFDLRPDTIIYNNV 170
           I + ++    GC     +  ++     +A   N+A+ VL ++    +    P +   + +
Sbjct: 450 IQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDAL 509

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +   C+ G    A +L+  M        + +Y  ++ G     R ++A  +F+ M   G 
Sbjct: 510 VESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGP 569

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
           A  +   + ++  +C    ++ A EL+  M K G  C P++ T  ++I  +C  G    A
Sbjct: 570 APEISTVNVVISWLCSAAKVDDAYELVQRMSKLG--CCPDIETCNTLIGGYCKSGRADLA 627

Query: 291 LGILDRMEALGCAPNRVT 308
             +L+ M   G  PN  T
Sbjct: 628 RKLLEEMTEAGLEPNDTT 645



 Score = 41.6 bits (96), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 49/119 (41%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G   +V     + +   + +  +EA  V   M      P+    N VI   C    + 
Sbjct: 531 ERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVD 590

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
            A EL++ M  +   PDI T  ++I G+C +GR + A  L + M   G   N   +  L
Sbjct: 591 DAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 649


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 153/288 (53%), Gaps = 5/288 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+ ++ +M    L+PD   YN +IR  C++G +  A E+++ + L    PD+I+Y  +
Sbjct: 245 DEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNIL 304

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           ++   N G+ E+   L   M    C  N+V YS L+  +CR G +E A+ LL  M+++G 
Sbjct: 305 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG- 363

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             +P+  +Y  +I  FC +G +  A+  L+ M + GC P+ V  +T++   C  G  D+A
Sbjct: 364 -LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            ++  K+   G   +   Y+++   L  +     A  +  +M+++G+ PD +  + MI  
Sbjct: 423 LEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISC 482

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           LC  G V E F L  D+    F  SV +  ++++LLG C K H +E A
Sbjct: 483 LCREGMVDEAFELLVDMRSCEFHPSVVT--YNIVLLGFC-KAHRIEDA 527



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 154/298 (51%), Gaps = 6/298 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
            +M+K+    C       E++ +L  M      PD I+   +I+ F    ++  A  +M+
Sbjct: 90  TQMLKIFHRSCRSGNYI-ESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVME 148

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +      PD+  Y ++I GFC   R++DA  +   M+    + + V Y+ ++  +C  G
Sbjct: 149 ILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ AL++L ++  +  +C P V+TYT +I+    +G + EAL ++D M + G  P+  T
Sbjct: 208 KLDLALKVLNQLLSD--NCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFT 265

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +T+I+G C EG +D A++++  +   GS      Y+ L+  L+   + +E EKL +KM 
Sbjct: 266 YNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMF 325

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +    P+ +  S++I  LC  G++ E   L + +++ G   + D+  +  L+   CR+
Sbjct: 326 SEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL--TPDAYSYDPLIAAFCRE 381



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 149/308 (48%), Gaps = 5/308 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  +C++  + + A  ++R +      PD I YN ++R    +G     ++LM  M   
Sbjct: 269 IIRGMCKEG-MVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE 327

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+++TY  +I   C  G++E+A  L K+MK  G   +  +Y  L+   CR G ++ A
Sbjct: 328 KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA 387

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +E L  M  +G  C P++V Y +V+   C  G   +AL I  ++  +GC+PN  + +T+ 
Sbjct: 388 IEFLETMISDG--CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMF 445

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
                 G+   A  +I ++++ G       Y+S++  L R   + EA +L   M +    
Sbjct: 446 SALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFH 505

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P  +  ++++   C   ++ +   + E +  +G     +   ++VL+ G+    +  EA 
Sbjct: 506 PSVVTYNIVLLGFCKAHRIEDAINVLESM--VGNGCRPNETTYTVLIEGIGFAGYRAEAM 563

Query: 434 KLARFMLK 441
           +LA  +++
Sbjct: 564 ELANDLVR 571



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 38/241 (15%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   ++  EAM +L+ M E  L PD   Y+ +I  FC +G +  A E ++ M   
Sbjct: 339 LITTLCRDGKIE-EAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PDI+ Y +++   C  G+ + A  +F  +   GC+ N  +Y+ +   +   G   RA
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA----------------------- 290
           L ++ EM   G D  P+ +TY S+I   C +GM+ EA                       
Sbjct: 458 LHMILEMMSNGID--PDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515

Query: 291 ------------LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                       + +L+ M   GC PN  T + LI+G    G   EA +L + +V   ++
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAI 575

Query: 339 S 339
           S
Sbjct: 576 S 576



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 4/181 (2%)

Query: 112 IIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           + I+ +E    +GC+   V    V+  LC+  + A++A+ +  K+ E    P++  YN +
Sbjct: 386 VAIEFLETMISDGCLPDIVNYNTVLATLCKNGK-ADQALEIFGKLGEVGCSPNSSSYNTM 444

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
                  GD I A  ++  M    + PD ITY SMI   C  G +++A  L   M+    
Sbjct: 445 FSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEF 504

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             ++V Y+ +L G C+   +E A+ +L  M   G  C PN  TYT +I+     G   EA
Sbjct: 505 HPSVVTYNIVLLGFCKAHRIEDAINVLESM--VGNGCRPNETTYTVLIEGIGFAGYRAEA 562

Query: 291 L 291
           +
Sbjct: 563 M 563



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 71/139 (51%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E GC  +      +F+    +     A+ ++ +M    + PD I YN++I   C +G + 
Sbjct: 431 EVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVD 490

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A EL+  M   + +P ++TY  ++ GFC A R+EDA  + + M  +GC  N   Y+ L+
Sbjct: 491 EAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLI 550

Query: 242 DGICRLGSMERALELLGEM 260
           +GI   G    A+EL  ++
Sbjct: 551 EGIGFAGYRAEAMELANDL 569


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 160/304 (52%), Gaps = 7/304 (2%)

Query: 144 LANEAMWVLRKMPEFD---LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           L  E   VL+ + E     L+P+   YN++I L C+ G +  A+ +++ M    + PD +
Sbjct: 22  LGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTV 81

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            Y ++I GFC  G ++ A  LF  M++     + +AY+A++ G+CR G M  A ++  +M
Sbjct: 82  VYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKM 141

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G    P+ VTYT++I  +C  G M++A  + ++M   G  PN VT + L  G C  G
Sbjct: 142 FSRG--VEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLG 199

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            +D A +L+ ++   G   +   Y+SLV  L ++  +++A KL  +M  +G+ PD +  +
Sbjct: 200 QVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFT 259

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            ++   C  G++++   L  ++   G   +V +   +VL+ G C      +  +L  +ML
Sbjct: 260 TLMDAYCKTGEMVKAHELLREMLDRGLQPTVIT--FNVLMNGFCMSGMLEDGERLLAWML 317

Query: 441 KKRI 444
           +K I
Sbjct: 318 EKGI 321



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 152/281 (54%), Gaps = 4/281 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + Y+ VI  +C  G++    +L++ M +  L P++ TY S+I   C +G+++DA  +
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M   G   + V Y+ L+DG C+LG+++ A +L  EMEK+     P+ + YT+VI   
Sbjct: 68  LREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQ--RIVPDFIAYTAVICGL 125

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G M EA  + ++M + G  P+ VT +TLI G+C  G +++A+ L +++V  G   + 
Sbjct: 126 CRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNV 185

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++L   L +  ++  A +L  +M   G++ +    + ++  LC  G + +   L E+
Sbjct: 186 VTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEE 245

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +E  G     D+   + L+   C+    V+A +L R ML +
Sbjct: 246 MEVAGMYP--DTITFTTLMDAYCKTGEMVKAHELLREMLDR 284



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 160/295 (54%), Gaps = 4/295 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  +  +M +  + PD I Y  VI   C  G M+ AD++   M    + PD +TY ++I 
Sbjct: 99  AYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLID 158

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G+C +G +E A  L   M + G   N+V Y+AL DG+C+LG ++ A ELL EM  +G   
Sbjct: 159 GYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKG--L 216

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             N+ TY S++   C  G +++A+ +++ ME  G  P+ +T +TL+  +C  G + +A++
Sbjct: 217 QLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHE 276

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ +++  G   +   ++ L+     +  L++ E+L + ML  G+ P+    + ++++ C
Sbjct: 277 LLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYC 336

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +   +     +Y+ +   G +   DS+ +++L+ G C+  +  EA  L + M +K
Sbjct: 337 IRNNMRCTTEIYKGMCARGVMP--DSNTYNILIKGHCKARNMKEAWFLHKEMAEK 389



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 142/262 (54%), Gaps = 3/262 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  ++ ++A  VLR+M    + PDT++Y  +I  FC+ G++ AA +L   M   
Sbjct: 51  IILLLCKSGKV-DDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQ 109

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD I Y ++I G C  G++ +A  +F  M   G   + V Y+ L+DG C+ G ME+A
Sbjct: 110 RIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKA 169

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  +M + G   +PNVVTYT++    C  G +  A  +L  M   G   N  T ++L+
Sbjct: 170 FSLHNQMVQSG--LTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLV 227

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  GN+ +A +L++++   G       +++L+    +T  + +A +L  +ML  G++
Sbjct: 228 NGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQ 287

Query: 374 PDGLACSVMIRELCLGGQVLEG 395
           P  +  +V++   C+ G + +G
Sbjct: 288 PTVITFNVLMNGFCMSGMLEDG 309



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 146/274 (53%), Gaps = 3/274 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC   ++  EA  V  KM    + PD + Y  +I  +C+ G+M  A  L   M   
Sbjct: 121 VICGLCRCGKMM-EADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQS 179

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+++TY ++  G C  G+++ A  L   M   G   N+  Y++L++G+C+ G++ +A
Sbjct: 180 GLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQA 239

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++L+ EME  G    P+ +T+T+++  +C  G M +A  +L  M   G  P  +T + L+
Sbjct: 240 VKLMEEMEVAG--MYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLM 297

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC+ G L++  +L+  ++  G + +   Y+SL+ +      ++   +++  M A GV 
Sbjct: 298 NGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVM 357

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           PD    +++I+  C    + E + L++++ + GF
Sbjct: 358 PDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGF 391



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 131/239 (54%), Gaps = 4/239 (1%)

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           MK  G A ++V+YS +++G C  G +++ L+L+ EM+ +G    PN+ TY S+I + C  
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKG--LKPNLYTYNSIILLLCKS 58

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + +A  +L  M   G  P+ V  +TLI GFC  GN+  AY+L D++     V     Y
Sbjct: 59  GKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAY 118

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++++  L R  ++ EA+K+F+KM + GV+PD +  + +I   C  G++ + F L+  + +
Sbjct: 119 TAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQ 178

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            G   +V +  ++ L  GLC+      A +L   M  K + L     + +V  L KSG+
Sbjct: 179 SGLTPNVVT--YTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGN 235



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 5/232 (2%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           ANE   +L +M    L+ +   YN+++   C+ G++  A +LM+ M +  +YPD IT+ +
Sbjct: 204 ANE---LLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTT 260

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           ++  +C  G +  A  L + M   G    ++ ++ L++G C  G +E    LL  M ++G
Sbjct: 261 LMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKG 320

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PN  TY S+++ +C +  M+    I   M A G  P+  T + LIKG C   N+ E
Sbjct: 321 --IMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKE 378

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           A+ L  ++   G   +   Y+S++    + K++ EA +LF +M   G+  D 
Sbjct: 379 AWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADA 430



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 90/169 (53%), Gaps = 2/169 (1%)

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M+  G AP+ V+ ST+I G+C+ G L +  +LI ++   G   +   Y+S+++ L ++ +
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
           + +AE++  +M+  G+ PD +  + +I   C  G +   + L++++EK   +   D   +
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVP--DFIAY 118

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           + ++ GLCR    +EA K+   M  + +         +++   KSG+ E
Sbjct: 119 TAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEME 167



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 9/159 (5%)

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
           W+L K     + P+T  YN++++ +C + +M    E+ KGM    + PD  TY  +IKG 
Sbjct: 315 WMLEK----GIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGH 370

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C A  +++A  L K M   G      +Y++++ G  +   +  A EL  EM +EG   + 
Sbjct: 371 CKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREG--MAA 428

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEAL-GCAPNRV 307
           +   Y   + I  G+G M+ AL + D  EA+  C  NR+
Sbjct: 429 DAEIYNLFVDISYGEGNMETALELCD--EAIENCFLNRI 465


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 171/354 (48%), Gaps = 49/354 (13%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E GC   V+M   I + +C++ RL   A  +L +MP + L P+ + YN +++  C     
Sbjct: 280 EHGCAPDVRMYATIIDGVCKEERL-EVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRW 338

Query: 181 IAADELMKGM----------------------GLID-------------LYPDIITYVSM 205
             A+ L+  M                      GL+D               PD+ITY ++
Sbjct: 339 EEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTV 398

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GFC  G +++A  L + M   GC  N V+Y+ +L G+C       A EL+ +M ++G 
Sbjct: 399 INGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQG- 457

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C PN VT+ ++I   C KG++++A+ +L +M   GC+P+ ++ ST+I G    GN DEA
Sbjct: 458 -CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEA 516

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L++ +V  G   +   YSS+   L    R+ +  ++F  +  + V+ D +  + +I  
Sbjct: 517 LELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISS 576

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSS----VDSDIHSVLLLGLCRKNHSVEAAKL 435
           LC  G+          IE + ++ S     +   +++L+ GL  +    EA ++
Sbjct: 577 LCKRGETDRA------IEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEI 624



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 167/342 (48%), Gaps = 7/342 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+   + +   ++ D++ ++  E  VVS     V+  LC  AR       ++ +M     
Sbjct: 192 CDQGPVDEAVRLLRDLLPSFGCEPDVVSYN--AVLRGLC-MARRWGHVQDLMEEMVAAGC 248

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + ++ +I   C  G      E+   M      PD+  Y ++I G C   RLE A G
Sbjct: 249 PPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARG 308

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +   M  +G + N+V Y+ LL G+C     E A  LL EM  +  DC  + VT+  ++  
Sbjct: 309 ILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDK--DCPLDDVTFNILVDF 366

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G++   + +L++M   GC P+ +T +T+I GFC EG +DEA  L+  + A G   +
Sbjct: 367 LCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPN 426

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ ++  L   +R  +AE+L S+M+  G  P+ +  + +I  LC  G V +   L +
Sbjct: 427 TVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLK 486

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +   G   S D   +S ++ GL +  ++ EA +L   M+KK
Sbjct: 487 QMLVNG--CSPDLISYSTVIDGLGKAGNTDEALELLNVMVKK 526



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 155/296 (52%), Gaps = 4/296 (1%)

Query: 113 IIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + D++E     GC  + V    +I +LC    L      V  +M E    PD  +Y  +I
Sbjct: 236 VQDLMEEMVAAGCPPNIVTFSTLIGHLCRNG-LFERVHEVHAQMAEHGCAPDVRMYATII 294

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
              C++  +  A  ++  M    L P+++ Y +++KG C+A R E+A GL   M    C 
Sbjct: 295 DGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCP 354

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            + V ++ L+D +C+ G ++R +E+L +M + G  C P+V+TYT+VI  FC +G++ EA+
Sbjct: 355 LDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHG--CMPDVITYTTVINGFCKEGLIDEAV 412

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +L  M A GC PN V+ + ++KG C      +A +L+ +++  G   +   +++L+  L
Sbjct: 413 MLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFL 472

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
            +   +++A +L  +ML +G  PD ++ S +I  L   G   E   L   + K G 
Sbjct: 473 CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGM 528



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 136/259 (52%), Gaps = 2/259 (0%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +I+V+E   E GC+  V     + N   K  L +EA+ +LR M     RP+T+ Y  V++
Sbjct: 376 VIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLK 435

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C     + A+ELM  M      P+ +T+ ++I   C  G +E A  L K M  +GC+ 
Sbjct: 436 GLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 495

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L++YS ++DG+ + G+ + ALELL  M K+G   SPN + Y+S+     G+G + + + 
Sbjct: 496 DLISYSTVIDGLGKAGNTDEALELLNVMVKKG--MSPNTIIYSSIASALSGEGRINKVIQ 553

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + + ++      + V  + +I   C  G  D A + +  +V+ G V +   Y+ L+  L 
Sbjct: 554 MFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLA 613

Query: 353 RTKRLKEAEKLFSKMLASG 371
               +KEA+++ +++ + G
Sbjct: 614 SEGFVKEAQEILTELCSKG 632



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 139/305 (45%), Gaps = 24/305 (7%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN ++  +C  G + AA  L      + + P+  TY  +++  C  GR+ DA  +   M 
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAAS---VPVAPNAYTYFPLVRALCARGRIADALAVLDDMA 138

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           R GCA     Y   L+  CR      A+ +L ++   G  C+ +V     V+Q  C +G 
Sbjct: 139 RRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRG--CALDVGNCNLVLQAVCDQGP 196

Query: 287 MKEALGIL-DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
           + EA+ +L D + + GC P+ V+ + +++G C+         L++++VA G   +   +S
Sbjct: 197 VDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFS 256

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           +L+  L R    +   ++ ++M   G  PD       +R   +   +++G C  E +E  
Sbjct: 257 TLIGHLCRNGLFERVHEVHAQMAEHGCAPD-------VR---MYATIIDGVCKEERLEVA 306

Query: 406 -GFLSSVDSD-------IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457
            G L+ + S         ++ LL GLC  +   EA  L   M  K   L     + +V+ 
Sbjct: 307 RGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDF 366

Query: 458 LKKSG 462
           L ++G
Sbjct: 367 LCQNG 371


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 170/335 (50%), Gaps = 16/335 (4%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F++N+A E           + +++    +GC   +    V+ N LC++    + A  
Sbjct: 194 HGLFLHNKASEA----------VALIDRMVAKGCQPDLVTYGVVVNGLCKRGD-TDLAFI 242

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L KM +  L P  +IY  +I   C+   M  A  L K M    + P+++TY S+I   C
Sbjct: 243 LLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N GR  DA  L   M       ++  +SAL+D   + G +  A +L  EM K   D  P+
Sbjct: 303 NYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID--PS 360

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           +VTY+S+I  FC    + EA  + + M +  C P+ V+ STLIKGFC    +DE  +L  
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFR 420

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V +   Y++L+  L +      A+++F +M++ GV P+ +  + ++  LC  G
Sbjct: 421 EMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           ++ +   ++E +++     ++ +  +++++ G+C+
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYT--YNIMIEGMCK 513



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 156/326 (47%), Gaps = 5/326 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C +++L   A+ VL KM +    P+ +  ++++  +C    +  A  L+  M +    P
Sbjct: 126 FCRRSQLP-LALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 184

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + +T+ ++I G     +  +A  L   M   GC  +LV Y  +++G+C+ G  + A  LL
Sbjct: 185 NTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILL 244

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +ME+  G   P V+ YT++I   C    M +AL +   ME  G  PN VT S+LI   C
Sbjct: 245 NKMEQ--GKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G   +A +L+  ++          +S+L+   V+  +L EAEKL+ +M+   + P  +
Sbjct: 303 NYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIV 362

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             S +I   C+  ++ E   ++E +        V S  +S L+ G C+     E  +L R
Sbjct: 363 TYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVS--YSTLIKGFCKAKRVDEGMELFR 420

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGD 463
            M ++ +         +++ L ++GD
Sbjct: 421 EMSQRGLVGNTVTYTTLIQGLFQAGD 446



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 149/320 (46%), Gaps = 30/320 (9%)

Query: 97  YNRACEMSRI-------KQNPSIII--DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
           Y R  + SR+       K NP +     +++A+ +EG             L E  +L +E
Sbjct: 304 YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG------------KLVEAEKLYDE 351

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
                  M +  + P  + Y+++I  FC    +  A ++ + M     +PD+++Y ++IK
Sbjct: 352 -------MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIK 404

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC A R+++   LF+ M + G   N V Y+ L+ G+ + G  + A E+  EM  +G   
Sbjct: 405 GFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDG--V 462

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PN++TY +++   C  G +++A+ + + ++     P   T + +I+G C  G +++ + 
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L   +   G       Y++++    R    +EA+ LF +M   G  P+    + +IR   
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582

Query: 388 LGGQVLEGFCLYEDIEKIGF 407
             G       L +++   GF
Sbjct: 583 RDGDREASAELIKEMRSCGF 602



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 132/268 (49%), Gaps = 13/268 (4%)

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           +I+  E M+ +G+   +    TY  +I  FC   +L  A  +   M + G   N+V  S+
Sbjct: 100 VISLGEQMQNLGMPHNH---YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSS 156

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           LL+G C    +  A+ L+ +M   G    PN VT+ ++I          EA+ ++DRM A
Sbjct: 157 LLNGYCHSKRISEAVALVDQMFVTG--YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVA 214

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            GC P+ VT   ++ G C  G+ D A+ L++K+  G        Y++++  L + K + +
Sbjct: 215 KGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDD 274

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED-IEKIGFLSSVDSDI--H 416
           A  LF +M   G++P+ +  S +I  LC  G+  +   L  D IE+      ++ D+   
Sbjct: 275 ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIER-----KINPDVFTF 329

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           S L+    ++   VEA KL   M+K+ I
Sbjct: 330 SALIDAFVKEGKLVEAEKLYDEMVKRSI 357



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 122/249 (48%), Gaps = 4/249 (1%)

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
           +P II +  ++       + +    L + M+  G   N   YS L++  CR   +  AL 
Sbjct: 78  FPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALA 137

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           +LG+M K G +  PN+VT +S++  +C    + EA+ ++D+M   G  PN VT +TLI G
Sbjct: 138 VLGKMMKLGYE--PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHG 195

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
             +     EA  LID++VA G       Y  +V  L +      A  L +KM    ++P 
Sbjct: 196 LFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPG 255

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            L  + +I  LC    + +   L++++E  G   +V +  +S L+  LC      +A++L
Sbjct: 256 VLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVT--YSSLISCLCNYGRWSDASRL 313

Query: 436 ARFMLKKRI 444
              M++++I
Sbjct: 314 LSDMIERKI 322



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L+DA  LF  M +     +++ +S LL  I ++   +  + L  +M+  G     N  T
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG--MPHNHYT 118

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y+ +I  FC +  +  AL +L +M  LG  PN VT+S+L+ G+C    + EA  L+D++ 
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G   +   +++L+  L    +  EA  L  +M+A G +PD +   V++  LC  G   
Sbjct: 179 VTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 238

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             F L   +E+      V   I++ ++ GLC+  H  +A  L + M  K I
Sbjct: 239 LAFILLNKMEQGKLEPGV--LIYTTIIDGLCKNKHMDDALNLFKEMETKGI 287



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 14/295 (4%)

Query: 32  AERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYR 91
           AE+ Y  + K   +I+ ++ T  + ++  C    +H       QM   F +         
Sbjct: 345 AEKLYDEMVKR--SIDPSIVTYSSLINGFC----MHDRLDEAKQM-FEFMVSKHCFPDVV 397

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWV 151
             S +    C+  R+ +     +++     + G V +      +     +A   + A  +
Sbjct: 398 SYSTLIKGFCKAKRVDEG----MELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEI 453

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
            ++M    + P+ + YN ++   C+ G +  A  + + +    + P I TY  MI+G C 
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
           AG++ED   LF  +   G   ++VAY+ ++ G CR GS E A  L  EM+++G    PN 
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG--TLPNS 571

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             Y ++I+     G  + +  ++  M + G A +  TI  L+     +G LD+++
Sbjct: 572 GCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKSF 625


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 153/288 (53%), Gaps = 5/288 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+ ++ +M    L+PD   YN +IR  C++G +  A E+++ + L    PD+I+Y  +
Sbjct: 245 DEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNIL 304

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           ++   N G+ E+   L   M    C  N+V YS L+  +CR G +E A+ LL  M+++G 
Sbjct: 305 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG- 363

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             +P+  +Y  +I  FC +G +  A+  L+ M + GC P+ V  +T++   C  G  D+A
Sbjct: 364 -LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            ++  K+   G   +   Y+++   L  +     A  +  +M+++G+ PD +  + MI  
Sbjct: 423 LEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISC 482

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           LC  G V E F L  D+    F  SV +  ++++LLG C K H +E A
Sbjct: 483 LCREGMVDEAFELLVDMRSCEFHPSVVT--YNIVLLGFC-KAHRIEDA 527



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 153/298 (51%), Gaps = 6/298 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
            +M+K+    C       E++ +L  M      PD I+   +I+ F    ++  A  +M+
Sbjct: 90  TQMLKIFHRSCRSGNYI-ESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVME 148

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +      PD+  Y ++I GFC   R++DA  +   M+    + + V Y+ ++  +C  G
Sbjct: 149 ILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ AL++L ++  +  +C P V+TYT +I+    +G + EAL ++D M + G  P+  T
Sbjct: 208 KLDLALKVLNQLLSD--NCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFT 265

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +T+I+G C EG +D A++++  +   G       Y+ L+  L+   + +E EKL +KM 
Sbjct: 266 YNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMF 325

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +    P+ +  S++I  LC  G++ E   L + +++ G   + D+  +  L+   CR+
Sbjct: 326 SEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL--TPDAYSYDPLIAAFCRE 381



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 149/308 (48%), Gaps = 5/308 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  +C++  + + A  ++R +      PD I YN ++R    +G     ++LM  M   
Sbjct: 269 IIRGMCKEG-MVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE 327

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+++TY  +I   C  G++E+A  L K+MK  G   +  +Y  L+   CR G ++ A
Sbjct: 328 KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA 387

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +E L  M  +G  C P++V Y +V+   C  G   +AL I  ++  +GC+PN  + +T+ 
Sbjct: 388 IEFLETMISDG--CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMF 445

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
                 G+   A  +I ++++ G       Y+S++  L R   + EA +L   M +    
Sbjct: 446 SALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFH 505

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P  +  ++++   C   ++ +   + E +  +G     +   ++VL+ G+    +  EA 
Sbjct: 506 PSVVTYNIVLLGFCKAHRIEDAINVLESM--VGNGCRPNETTYTVLIEGIGFAGYRAEAM 563

Query: 434 KLARFMLK 441
           +LA  +++
Sbjct: 564 ELANDLVR 571



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 147/290 (50%), Gaps = 9/290 (3%)

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C  G+ I +  L++ M      PD+I    +IKGF     +  A  + +++++ G   ++
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
            AY+AL++G C++  ++ A  +L  M  +  D SP+ VTY  +I   C +G +  AL +L
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSK--DFSPDTVTYNIMIGSLCSRGKLDLALKVL 216

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           +++ +  C P  +T + LI+   +EG +DEA +L+D++++ G       Y++++  + + 
Sbjct: 217 NQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
             +  A ++   +   G +PD ++ ++++R L   G+  EG    E +    F    D +
Sbjct: 277 GMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEG----EKLMTKMFSEKCDPN 332

Query: 415 I--HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +  +S+L+  LCR     EA  L + M +K +       D ++    + G
Sbjct: 333 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREG 382



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 38/241 (15%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   ++  EAM +L+ M E  L PD   Y+ +I  FC +G +  A E ++ M   
Sbjct: 339 LITTLCRDGKIE-EAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PDI+ Y +++   C  G+ + A  +F  +   GC+ N  +Y+ +   +   G   RA
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA----------------------- 290
           L ++ EM   G D  P+ +TY S+I   C +GM+ EA                       
Sbjct: 458 LHMILEMMSNGID--PDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515

Query: 291 ------------LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                       + +L+ M   GC PN  T + LI+G    G   EA +L + +V   ++
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAI 575

Query: 339 S 339
           S
Sbjct: 576 S 576



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 4/181 (2%)

Query: 112 IIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           + I+ +E    +GC+   V    V+  LC+  + A++A+ +  K+ E    P++  YN +
Sbjct: 386 VAIEFLETMISDGCLPDIVNYNTVLATLCKNGK-ADQALEIFGKLGEVGCSPNSSSYNTM 444

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
                  GD I A  ++  M    + PD ITY SMI   C  G +++A  L   M+    
Sbjct: 445 FSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEF 504

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             ++V Y+ +L G C+   +E A+ +L  M   G  C PN  TYT +I+     G   EA
Sbjct: 505 HPSVVTYNIVLLGFCKAHRIEDAINVLESM--VGNGCRPNETTYTVLIEGIGFAGYRAEA 562

Query: 291 L 291
           +
Sbjct: 563 M 563



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 71/139 (51%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E GC  +      +F+    +     A+ ++ +M    + PD I YN++I   C +G + 
Sbjct: 431 EVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVD 490

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A EL+  M   + +P ++TY  ++ GFC A R+EDA  + + M  +GC  N   Y+ L+
Sbjct: 491 EAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLI 550

Query: 242 DGICRLGSMERALELLGEM 260
           +GI   G    A+EL  ++
Sbjct: 551 EGIGFAGYRAEAMELANDL 569


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 165/325 (50%), Gaps = 12/325 (3%)

Query: 87  QSSYRHSSFMYNRA----CEMSRIKQNPSIIIDV-VEAYKEEGCVVSVKMMKVIFNLCEK 141
           +S Y  S   YN      C+  R K    +I  +  +  + + C  ++    ++ +LC+ 
Sbjct: 196 ESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNM----LVDDLCKN 251

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
            R A +   +L+KM +  + P+ I YN++I  F ++G + AA  + + M +++L P+ +T
Sbjct: 252 NRSA-KGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVT 310

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y ++I G C+ G  E A  + ++M+  G   N V+YSALL+G+CR    E +  +L  M 
Sbjct: 311 YNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMR 370

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G       + YT++I   C  G++ E++ +LD+M   G  P+ VT S LI GFC  G 
Sbjct: 371 MNG--MIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGK 428

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +    ++I K+   G   +   Y++L+    +T  + EA K++  M   G   +   C+V
Sbjct: 429 IKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNV 488

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIG 406
           ++  LC  G+V      +  + KIG
Sbjct: 489 LVSSLCKDGKVGVAEYFFHHMSKIG 513



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 161/333 (48%), Gaps = 41/333 (12%)

Query: 129 VKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           V    ++ N LC + +L  +A ++L+KM E    P  + YN V+  +C+KG   AA EL+
Sbjct: 168 VSTFNILINVLCVEGKL-KKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELI 226

Query: 188 KGMG-------------LID----------------------LYPDIITYVSMIKGFCNA 212
             MG             L+D                      + P+ ITY S+I GF   
Sbjct: 227 DQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKE 286

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G++  A  +F+ M       N V Y+AL+DG C  G+ E+AL +L  ME  G    PN V
Sbjct: 287 GKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGP--KPNEV 344

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           +Y++++   C     + +  IL+RM   G     +  + +I G C  G L+E+ +L+DK+
Sbjct: 345 SYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKM 404

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +  G V     +S L+    R  ++K  +++  KM  +G+ P+ +  + +I   C  G V
Sbjct: 405 LKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDV 464

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +E F +Y  + +IG+    +  I +VL+  LC+
Sbjct: 465 VEAFKVYVAMSRIGY--DANCFICNVLVSSLCK 495



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 151/335 (45%), Gaps = 20/335 (5%)

Query: 107 KQNPSIIIDVVEAYKEEGCV----------------VSVKMMKVIFNLCEKARLANEAMW 150
           K NPS+   ++  Y  EG V                 SV    ++     K R       
Sbjct: 95  KSNPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWL 154

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
             ++M    + PD   +N +I + C +G +  A  L+K M      P ++TY +++  +C
Sbjct: 155 FFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYC 214

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             GR + A  L   M   G  A+   Y+ L+D +C+     +   LL +M K     SPN
Sbjct: 215 KKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRM--ISPN 272

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
            +TY S+I  F  +G +  A  I   M  L   PN VT + LI G C +GN ++A  +++
Sbjct: 273 EITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILE 332

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
            + A G   +   YS+L+  L R  + + ++ +  +M  +G+    +A + MI  LC  G
Sbjct: 333 MMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNG 392

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            + E   L + + K G +  V +   SVL+ G CR
Sbjct: 393 LLNESVKLLDKMLKDGVVPDVVT--FSVLINGFCR 425



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 174/398 (43%), Gaps = 32/398 (8%)

Query: 45  NIEKTLATVKAKLDSTC----------VIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSS 94
           N+     T  A +D  C          ++E++    P  +++       A L    RH+ 
Sbjct: 303 NLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYS----ALLNGLCRHAK 358

Query: 95  FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           F  +++  + R++ N  I+          GC+    M   I  LC    L NE++ +L K
Sbjct: 359 FELSKSI-LERMRMNGMIV----------GCIAYTAM---IDGLCRNG-LLNESVKLLDK 403

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M +  + PD + ++ +I  FC  G +    E++  M    L P+ I Y ++I  +C  G 
Sbjct: 404 MLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGD 463

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           + +A  ++  M R G  AN    + L+  +C+ G +  A      M K G    PN +T+
Sbjct: 464 VVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGN--VPNSITF 521

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +I  +   G   +A  + D M   G  P+  T   L+K  C  G   EA +L+DK+  
Sbjct: 522 DCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHY 581

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
             S      Y++++VE  ++  L +A  LF +M+   V PD    +++   L   G+++ 
Sbjct: 582 IPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVA 641

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
               Y ++   G +S  +  +++  + GL R   S  A
Sbjct: 642 ALHFYGNLLGKGAVSP-EKVMYTTFVDGLFRAGQSKAA 678



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 151/342 (44%), Gaps = 43/342 (12%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL---MKGMGLIDLYP 197
           K+ +  +A+ +  +M + ++ PD+  Y  +      +G M+AA      + G G +   P
Sbjct: 600 KSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVS--P 657

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + + Y + + G   AG+ + A    + M+++G  A+L+A + +L+G  R+G M +A ++ 
Sbjct: 658 EKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIF 717

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M   G   SP++ TY  ++  +  K  + +   + + M   G  P+++T  +LI GFC
Sbjct: 718 -TMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFC 776

Query: 318 VEGNLD-----------------------------------EAYQLIDKVVAGGSVSSGG 342
               LD                                   +A+ L++ +          
Sbjct: 777 KSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMT 836

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            + S++  L R   ++E+  L  +ML  G  PD      ++  +C  G +   F L +++
Sbjct: 837 THDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEM 896

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           E +G +SS D    S L+ GL +     EA  +  FML+K +
Sbjct: 897 EALG-ISSGDV-AESALVRGLAKCGKVEEAKLVLDFMLRKSL 936



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 132/288 (45%), Gaps = 8/288 (2%)

Query: 160  LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            + P    YN ++  + +K ++     L   M    ++PD +T  S+I GFC +  L+   
Sbjct: 726  ISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGFCKSAMLDVGL 785

Query: 220  GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
             L K M   G A +   ++ L+   C    + +A +L+  M     D  P++ T+ S+I 
Sbjct: 786  KLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLF--DIFPDMTTHDSIIS 843

Query: 280  IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +      ++E+  +L  M   GC P+R     L+   C  G++  A++L D++ A G  S
Sbjct: 844  VLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISS 903

Query: 340  SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
                 S+LV  L +  +++EA+ +   ML   + P     + ++   C    ++E   L 
Sbjct: 904  GDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLK 963

Query: 400  EDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
            + ++       V  D+  ++VL+ GLC       A KL + + ++ +W
Sbjct: 964  DTMD----FCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQRGLW 1007



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 3/248 (1%)

Query: 163  DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
            D   +N +I  +CE  ++  A +L+  M L D++PD+ T+ S+I        ++++  L 
Sbjct: 799  DQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLL 858

Query: 223  KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
              M   GC  +   Y AL++ +CR+G +  A +L  EME  G   S   V  +++++   
Sbjct: 859  HEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALG--ISSGDVAESALVRGLA 916

Query: 283  GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
              G ++EA  +LD M      P   T +TL+  FC   +L EA +L D +          
Sbjct: 917  KCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVI 976

Query: 343  CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL-EGFCLYED 401
             Y+ L+  L     +  A KL+ ++   G+ P+     ++I  +      L +G  L +D
Sbjct: 977  AYNVLISGLCADGDVASALKLYKEIKQRGLWPNMTTYCILIDAIFTNDISLAKGEVLLKD 1036

Query: 402  IEKIGFLS 409
            +++ G +S
Sbjct: 1037 LQERGVIS 1044



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 108/235 (45%), Gaps = 4/235 (1%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I+ +   G + DA   F++M   G   ++   + LL  + +   +        EM    
Sbjct: 104 LIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLAR- 162

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               P+V T+  +I + C +G +K+A  +L +ME  G  P+ VT +T++  +C +G    
Sbjct: 163 -RVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKA 221

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A +LID++ + G  +    Y+ LV +L +  R  +   L  KM    + P+ +  + +I 
Sbjct: 222 ALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIIN 281

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
                G++     +++++  +  L +  +  ++ L+ G C   +  +A  +   M
Sbjct: 282 GFVKEGKIGAATRIFQEMSMLNLLPNCVT--YNALIDGHCHDGNFEQALTILEMM 334



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 122  EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
            E GC+   +    + N +C    + + A  +  +M    +    +  + ++R   + G +
Sbjct: 863  ERGCIPDRRQYIALVNRMCRMGHI-HGAFKLKDEMEALGISSGDVAESALVRGLAKCGKV 921

Query: 181  IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
              A  ++  M    L P I T+ +++  FC    L +A  L   M       +++AY+ L
Sbjct: 922  EEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVL 981

Query: 241  LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            + G+C  G +  AL+L  E+++ G    PN+ TY  +I 
Sbjct: 982  ISGLCADGDVASALKLYKEIKQRG--LWPNMTTYCILID 1018



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C  N      LI+ +  EG + +A +    +   G   S    + L+ +LV+ +++    
Sbjct: 94  CKSNPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVW 153

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
             F +MLA  V PD    +++I  LC+ G++ +   L + +E+ G++ SV +  ++ +L 
Sbjct: 154 LFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVT--YNTVLN 211

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
             C+K     A +L   M  K I       + +V+ L K+
Sbjct: 212 WYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKN 251


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 172/342 (50%), Gaps = 12/342 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C + R+++   +    V+    +GC+ SV     +     + R A+EA  +L ++PE ++
Sbjct: 258 CGLGRVREAARL----VDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNV 313

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
               ++ N VIR    +G +  A EL + MG     PD+ TY  ++ G C  GR   A  
Sbjct: 314 ----VMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVR 369

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +   M+  GCA N+V YS LL   CR G  + A  +L +M  +G   S N   Y  +I  
Sbjct: 370 MLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKG--FSMNSQGYNGIIYA 427

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G + +A  ++  M++ GC P+  T +T+I   C    ++EA  +   ++  G V++
Sbjct: 428 LCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVAN 487

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  Y++L+  L+R  R +E  +L S+ML  G + D ++ + +I+ LC  G V     L E
Sbjct: 488 GITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLE 547

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           ++   G   +  S  +++L+  LC+     +A +L++ ML +
Sbjct: 548 EMVTKGIKPNNFS--YNMLINELCKAGKVRDALELSKEMLNQ 587



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 172/371 (46%), Gaps = 46/371 (12%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R A +A+ +LR M      PD ++Y  VI     +G +  A  L+  M L+    
Sbjct: 187 LCRLGR-AGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAA 245

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---------- 247
           D+ T+  ++ G C  GR+ +A  L   M   GC  ++V Y  LL G+CR           
Sbjct: 246 DVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAML 305

Query: 248 ---------------------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
                                G + RA EL   M  +G  C P+V TY+ ++   C  G 
Sbjct: 306 GRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKG--CPPDVHTYSILMHGLCKLGR 363

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYS 345
              A+ +LD ME  GCAPN VT STL+  FC  G  D+A  ++D+++A G S++S G Y+
Sbjct: 364 FGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQG-YN 422

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
            ++  L +  +L +A +L  +M + G KPD    + MI  LC    + E   ++ ++ + 
Sbjct: 423 GIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEE 482

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD-- 463
           G ++  +   ++ L+  L R     E  +LA  ML     L     + +++ L K G+  
Sbjct: 483 GVVA--NGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVD 540

Query: 464 ------EELIT 468
                 EE++T
Sbjct: 541 RSMALLEEMVT 551



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 143/312 (45%), Gaps = 8/312 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           S +   V+ +   +A    +A+ + R+M    + P T  +    R  C  G    A  L+
Sbjct: 141 SFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALL 200

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           +GM      PD + Y ++I      G + +A  L   M   GCAA++  ++ L+ G+C L
Sbjct: 201 RGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGL 260

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +  A  L+  M  +G  C P+VVTY  ++Q  C      EA  +L R+  +    N V
Sbjct: 261 GRVREAARLVDRMMTQG--CMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEV----NVV 314

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            ++T+I+G   EG L  A +L + + + G       YS L+  L +  R   A ++  +M
Sbjct: 315 MLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEM 374

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  P+ +  S ++   C  G   +   + + +   GF  S++S  ++ ++  LC+  
Sbjct: 375 EEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGF--SMNSQGYNGIIYALCKDG 432

Query: 428 HSVEAAKLARFM 439
              +A +L + M
Sbjct: 433 KLDQATRLVQEM 444



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 115/239 (48%), Gaps = 4/239 (1%)

Query: 116 VVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +V+  K +GC   +     +I++LC    L  EA  + R + E  +  + I YN +I   
Sbjct: 440 LVQEMKSQGCKPDICTYNTMIYHLCNN-DLMEEAEHIFRNLIEEGVVANGITYNTLIHAL 498

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
              G       L   M L     D+I+Y  +IK  C  G ++ +  L + M   G   N 
Sbjct: 499 LRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNN 558

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
            +Y+ L++ +C+ G +  ALEL  EM  +G   +P++VTY ++I   C  G    AL +L
Sbjct: 559 FSYNMLINELCKAGKVRDALELSKEMLNQG--LTPDIVTYNTLINGLCKVGWTHAALNLL 616

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           +++      P+ VT + LI   C    LD+A  L+DK ++GG V +   +  +V   VR
Sbjct: 617 EKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNFVR 675



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 126/305 (41%), Gaps = 35/305 (11%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P   +Y  ++     A    DA  L++ M R         +      +CRLG    AL L
Sbjct: 140 PSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALAL 199

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M + G  C P+ V Y +VI     +G + EA  +LD M  +GCA +  T + L+ G 
Sbjct: 200 LRGMARHG--CVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGL 257

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK--------------------- 355
           C  G + EA +L+D+++  G + S   Y  L+  L RT+                     
Sbjct: 258 CGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLN 317

Query: 356 ----------RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
                     +L  A +L+  M + G  PD    S+++  LC  G+      + +++E+ 
Sbjct: 318 TVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEK 377

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           G   ++ +  +S LL   CR     +A  +   ML K   +     + I+  L K G  +
Sbjct: 378 GCAPNIVT--YSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLD 435

Query: 466 LITNL 470
             T L
Sbjct: 436 QATRL 440



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 2/175 (1%)

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L ++ +R   + +  +Y+ +L  + R      AL L   M ++     P   T+    + 
Sbjct: 129 LDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRD--RVPPTTFTFGVAARA 186

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G   +AL +L  M   GC P+ V   T+I     +G + EA  L+D+++  G  + 
Sbjct: 187 LCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAAD 246

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
              ++ LV+ L    R++EA +L  +M+  G  P  +    +++ LC   Q  E 
Sbjct: 247 VNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEA 301


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 178/371 (47%), Gaps = 34/371 (9%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           +  ++ +RFF WA  Q  YRH               + P     V+ +Y   G       
Sbjct: 206 TDERVALRFFYWADRQWRYRHDPI------------RRPEAFGYVMVSYSRAG------- 246

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
                      +L N AM VL  M +  + PD  I N  I +      +  A   ++ M 
Sbjct: 247 -----------KLRN-AMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQ 294

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           ++++ P++ITY  +IKG+C+  RLEDA  L   M   GC+ + ++Y  ++  +C+   ++
Sbjct: 295 IVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIK 354

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
               L+ +M K+  +  P+ VTY + + +    G   EAL  L   E      ++V  S 
Sbjct: 355 EVRLLMEKMLKD-SNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSA 413

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           ++  FC EG +D+A ++++++ + G +     Y+S++  L + +++ +A+K+  +M   G
Sbjct: 414 IVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHG 473

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
            KP+ ++ + ++  LC  G  LE   +    E+  ++ +  +  +SVL+ G  R+  S E
Sbjct: 474 CKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAIT--YSVLMHGFRREGKSSE 531

Query: 432 AAKLARFMLKK 442
           A  L R M+KK
Sbjct: 532 ACDLVREMIKK 542



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 4/299 (1%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            +EA+  LR+  E   R D + Y+ ++  FC +G M  A E++  M      PD++TY S
Sbjct: 389 GDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTS 448

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C   +++ A  + + M +HGC  N V+Y+ALL+G+C+ G+   A E++   E++ 
Sbjct: 449 VINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDW 508

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PN +TY+ ++  F  +G   EA  ++  M   G  P  V I+ LI+  C E  +DE
Sbjct: 509 W--IPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDE 566

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A + +++ +  G   +   +++++    +   L+ A  L   M  S   PD +  + +I 
Sbjct: 567 AKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIID 626

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
            L   G++ E   L   + ++G + +  +  +  ++   CR     +  KL   ML ++
Sbjct: 627 ALGKKGRIEEATKLAMKMLRVGLIPTPVT--YRTVIHQYCRMGRVEDLLKLLEKMLSRQ 683



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 172/350 (49%), Gaps = 25/350 (7%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C++ R++    +I ++   +K  GC    +    V+  LC++ R+    + + + + + +
Sbjct: 313 CDLHRLEDAMELIAEM--PFK--GCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSN 368

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L PD + YN  + +  + G    A E ++         D + Y +++  FC  GR++ A 
Sbjct: 369 LLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAK 428

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +   M   GC  ++V Y+++++G+C+   +++A ++L +M K G  C PN V+YT+++ 
Sbjct: 429 EIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHG--CKPNTVSYTALLN 486

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G   EA  +++  E     PN +T S L+ GF  EG   EA  L+ +++  G   
Sbjct: 487 GLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFP 546

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +    + L+  L + +++ EA++   + L +G       C+V +        V+ GFC  
Sbjct: 547 TPVEINLLIQSLCQEEKVDEAKRFMEQCLNNG-------CAVNVVNFT---TVIHGFCQK 596

Query: 400 EDIEKI------GFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLK 441
           +D+E         +LS+   D+  ++ ++  L +K    EA KLA  ML+
Sbjct: 597 DDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLR 646



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 157/353 (44%), Gaps = 78/353 (22%)

Query: 115 DVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++V     +GC+  V     VI  LC++ R  ++A  +LR+M +   +P+T+ Y  ++  
Sbjct: 429 EIVNEMFSKGCIPDVVTYTSVINGLCQE-RKVDQAKKMLRQMYKHGCKPNTVSYTALLNG 487

Query: 174 FCEKGDMIAADELMKGMGLIDLY-PDIITYVSMIKGFCNAGRLEDACGLFKVM------- 225
            C+ G+ + A E+M  M   D + P+ ITY  ++ GF   G+  +AC L + M       
Sbjct: 488 LCKNGNSLEAREMM-NMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFP 546

Query: 226 ---------------------KR-------HGCAANLVAYSALLDGICRLGSMERALELL 257
                                KR       +GCA N+V ++ ++ G C+   +E AL LL
Sbjct: 547 TPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLL 606

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M        P+VVTYT++I     KG ++EA  +  +M  +G  P  VT  T+I  +C
Sbjct: 607 DDMYLSNK--HPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYC 664

Query: 318 ----VE-----------------------------GNLDEAYQLIDKVVAGGS-VSSGGC 343
               VE                             GNL++AY+L+ KV+   S + +  C
Sbjct: 665 RMGRVEDLLKLLEKMLSRQECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTC 724

Query: 344 YSSLVVELVRTKRLK-EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           +  +++E   +K +   +  +  +M    + PD   C  + ++L L G+  E 
Sbjct: 725 H--MLIESYLSKGIPLMSYNVACRMFNRNLIPDLKLCEKVSKKLMLEGKSEEA 775



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 8/218 (3%)

Query: 124 GCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC V+V     VI   C+K  L   A+ +L  M   +  PD + Y  +I    +KG +  
Sbjct: 578 GCAVNVVNFTTVIHGFCQKDDL-EAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEE 636

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSALL 241
           A +L   M  + L P  +TY ++I  +C  GR+ED   L  K++ R  C     AY+ ++
Sbjct: 637 ATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECR---TAYNQVI 693

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           + +C  G++E+A +LLG++ +       N  T   +I+ +  KG+   +  +  RM    
Sbjct: 694 EKLCSFGNLEQAYKLLGKVLRTASKIDAN--TCHMLIESYLSKGIPLMSYNVACRMFNRN 751

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             P+      + K   +EG  +EA +LI + V  G +S
Sbjct: 752 LIPDLKLCEKVSKKLMLEGKSEEADKLILRFVERGRIS 789


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 157/296 (53%), Gaps = 4/296 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A+ +  KM   ++ PD   ++ ++  FC+ G++  A  ++  M    + PD++TY S++
Sbjct: 386 DAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLM 445

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C    +  A  +F  M   G  AN+ +Y+ +++G C++  ++ A++L  EM  +   
Sbjct: 446 DGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHK--Q 503

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+V+TY+S+I   C  G +  AL ++D M   G  P+ +T ++++   C + ++D+A 
Sbjct: 504 IFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAI 563

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L+ K+   G       Y+ LV  L ++ +L++A K+F  +L  G   D  A +VMI+  
Sbjct: 564 TLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGF 623

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           C  G   E   L   +E+ G +   D+  + +++L L  K+ +  A KL R M+ +
Sbjct: 624 CDKGLFDEALALLSKMEENGCIP--DAKTYEIIILSLFEKDENDMAEKLLREMIMR 677



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 152/308 (49%), Gaps = 4/308 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            V M   I +   K +  N+A  +  +     + PD   YN +I  FC  G +  A +L 
Sbjct: 332 DVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLF 391

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M   ++ PD+ T+  ++ GFC  G +++A  +  +M +     ++V YS+L+DG C +
Sbjct: 392 NKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLV 451

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             + +A  +   M   G   + NV +Y  +I  FC   M+ EA+ +   M      P+ +
Sbjct: 452 NEVNKAESIFNTMSHRG--VTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVI 509

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S+LI G C  G +  A +L+D++   G       Y+S++  L +   + +A  L +K+
Sbjct: 510 TYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKL 569

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G++PD    +++++ LC  G++ +   ++ED+   G+  ++D   ++V++ G C K 
Sbjct: 570 KGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGY--NLDVYAYTVMIQGFCDKG 627

Query: 428 HSVEAAKL 435
              EA  L
Sbjct: 628 LFDEALAL 635



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 4/266 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD IT  + IKGFC  G++  A      +   G   + V+Y  L++G+C++G  + ALEL
Sbjct: 261 PDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALEL 320

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L     +G    P+VV Y ++I   C    + +A  +     +    P+  T + LI GF
Sbjct: 321 L--RRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGF 378

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C+ G L +A  L +K+ +   +     +S LV    +   +KEA+ + + M+   +KPD 
Sbjct: 379 CIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDV 438

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  S ++   CL  +V +   ++  +   G  ++V S  +++++ G C+     EA KL 
Sbjct: 439 VTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQS--YNIMINGFCKIKMVDEAMKLF 496

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSG 462
           + M  K+I+        +++ L KSG
Sbjct: 497 KEMHHKQIFPDVITYSSLIDGLCKSG 522



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 124/243 (51%), Gaps = 5/243 (2%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            N+A  +   M    +  +   YN +I  FC+   +  A +L K M    ++PD+ITY S
Sbjct: 454 VNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSS 513

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C +GR+  A  L   M   G   +++ Y+++LD +C+   +++A+ LL +++ +G
Sbjct: 514 LIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQG 573

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               P++ TYT +++  C  G +++A  + + +   G   +    + +I+GFC +G  DE
Sbjct: 574 --IRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDE 631

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV---KPDGLACSV 381
           A  L+ K+   G +     Y  +++ L        AEKL  +M+  G+     D L  S+
Sbjct: 632 ALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLLVALTDDLVASI 691

Query: 382 MIR 384
           ++R
Sbjct: 692 LVR 694



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 149/318 (46%), Gaps = 11/318 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PDTI     I+ FC KG +  A      +  +  + D ++Y ++I G C  G  + A  L
Sbjct: 261 PDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALEL 320

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            +         ++V Y+ ++DG+C+   +  A +L    EK      P+V TY ++I  F
Sbjct: 321 LRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYS--EKVSKRIFPDVFTYNALISGF 378

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G +K+A+ + ++M +    P+  T S L+ GFC +GN+ EA  ++  ++        
Sbjct: 379 CIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDV 438

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             YSSL+        + +AE +F+ M   GV  +  + ++MI   C    V E   L+++
Sbjct: 439 VTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKE 498

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV---DKIVEHL 458
           +        V +  +S L+ GLC+      A +L   M  +    Q P +   + I++ L
Sbjct: 499 MHHKQIFPDVIT--YSSLIDGLCKSGRISYALELVDEMHYRG---QQPDIITYNSILDAL 553

Query: 459 -KKSGDEELITNLPKIGG 475
            KK   ++ IT L K+ G
Sbjct: 554 CKKHHVDKAITLLTKLKG 571



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 11/132 (8%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM-----IAADELMKGMGL 192
           LC+K  + ++A+ +L K+    +RPD   Y  +++  C+ G +     +  D L+KG  L
Sbjct: 553 LCKKHHV-DKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNL 611

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
                D+  Y  MI+GFC+ G  ++A  L   M+ +GC  +   Y  ++  +      + 
Sbjct: 612 -----DVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDM 666

Query: 253 ALELLGEMEKEG 264
           A +LL EM   G
Sbjct: 667 AEKLLREMIMRG 678


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 158/315 (50%), Gaps = 9/315 (2%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ ++ +M E    P+   YN VI   C+ G +  A  L+         PDI TY ++I 
Sbjct: 384 ALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLID 443

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G+C   +L+ A  +   M   G   +++ Y+ LL+G+C+ G  E  +E+   ME++G  C
Sbjct: 444 GYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKG--C 501

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +PN++TY  ++   C    + EA+ +L  M++ G  P+ V+  TL  GFC  G++D AYQ
Sbjct: 502 TPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQ 561

Query: 328 LIDKVVAGGSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           L  ++     V  +   Y+ +V        +  A KLFS M  SG  PD     V+I   
Sbjct: 562 LFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGF 621

Query: 387 CLGGQVLEGF-CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           C  G + +G+  L E++EK  F+ S+ +     +L  LC K+   EA  +   ML+K I 
Sbjct: 622 CKMGNITQGYKFLLENMEK-RFIPSLTT--FGRVLNCLCVKDKVHEAVGIIHLMLQKGIV 678

Query: 446 LQGPYVDKIVEHLKK 460
            +   V+ I E  KK
Sbjct: 679 PET--VNTIFEADKK 691



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 149/296 (50%), Gaps = 4/296 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA   LRKM      PD + YN++I  +C+KG +  A+ ++K        PD  TY S+I
Sbjct: 278 EAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLI 337

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC  G  + A  +FK     G   ++V Y+ L+ G+ + G +  AL+L+ EM + G  
Sbjct: 338 NGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENG-- 395

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PN+ TY  VI   C  G + +A  ++D   A GC P+  T +TLI G+C +  LD A 
Sbjct: 396 CLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSAT 455

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           ++++++ + G       Y++L+  L +  + +E  ++F  M   G  P+ +  ++++  L
Sbjct: 456 EMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSL 515

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           C   +V E   L  +++  G    V S     L  G C+      A +L R M K+
Sbjct: 516 CKAKKVNEAVDLLGEMKSKGLKPDVVS--FGTLFTGFCKIGDIDGAYQLFRRMEKQ 569



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 138/313 (44%), Gaps = 19/313 (6%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+    +M  ++  P    +N ++ +  E G    A ++   M    +  D+ TY   I
Sbjct: 94  EAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRI 153

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           K FC   R   A  L + M   GC +N VAY  ++ G+   G  + A EL  EM      
Sbjct: 154 KSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLAR--- 210

Query: 267 C-SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD-- 323
           C  P+VV +  ++ + C KG++ E+  +L ++   G  PN  T +  ++G C EG LD  
Sbjct: 211 CLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRA 270

Query: 324 -------EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
                  EA + + K+V GG       Y+S++    +   +++A ++    +  G KPD 
Sbjct: 271 VRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDE 330

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
                +I   C  G       +++D    G   S+   +++ L+ GL ++   + A +L 
Sbjct: 331 FTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSI--VLYNTLIKGLSQQGLILPALQLM 388

Query: 437 RFMLKK----RIW 445
             M +      IW
Sbjct: 389 NEMAENGCLPNIW 401



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 164/370 (44%), Gaps = 17/370 (4%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D  E      C  SV     I N+  +    N+A  V  +M +  ++ D   Y   I+ 
Sbjct: 96  VDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKS 155

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+     AA  L++ M  +    + + Y +++ G  ++G  + A  LF  M       +
Sbjct: 156 FCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPD 215

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK----- 288
           +VA++ L+  +C+ G +  +  LLG++ K G    PN+ T+   +Q  C +G +      
Sbjct: 216 VVAFNKLVHVLCKKGLVFESERLLGKVLKRG--VCPNLFTFNIFVQGLCREGALDRAVRN 273

Query: 289 ----EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
               EA   L +M   G  P+ +T +++I G+C +G + +A +++   V  G       Y
Sbjct: 274 SRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTY 333

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
            SL+    +      A  +F   L  G++P  +  + +I+ L   G +L    L  ++ +
Sbjct: 334 CSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAE 393

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIWLQGPYVDKIVEHLKK 460
            G L ++ +  +++++ GLC+     +A+ L    + K     I+     +D   + LK 
Sbjct: 394 NGCLPNIWT--YNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKL 451

Query: 461 SGDEELITNL 470
               E++  +
Sbjct: 452 DSATEMVNRM 461



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 7/205 (3%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           ++++ +A +E+GC  ++    +I +   KA+  NEA+ +L +M    L+PD + +  +  
Sbjct: 489 VMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFT 548

Query: 173 LFCEKGDMIAADELMKGM-GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
            FC+ GD+  A +L + M    D+     TY  ++  F     +  A  LF VMK  GC 
Sbjct: 549 GFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCD 608

Query: 232 ANLVAYSALLDGICRLGSMERALELLGE-MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
            +   Y  ++DG C++G++ +  + L E MEK      P++ T+  V+   C K  + EA
Sbjct: 609 PDNYTYRVVIDGFCKMGNITQGYKFLLENMEKR---FIPSLTTFGRVLNCLCVKDKVHEA 665

Query: 291 LGILDRMEALGCAPNRVTISTLIKG 315
           +GI+  M   G  P   T++T+ + 
Sbjct: 666 VGIIHLMLQKGIVPE--TVNTIFEA 688



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 2/189 (1%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y+  +K +   G++++A   F+ M  + C  ++ +++A+++ +   G   +A ++   M 
Sbjct: 79  YIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMR 138

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G     +V TYT  I+ FC       AL +L  M  LGC  N V   T++ G    G 
Sbjct: 139 DRG--VQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGE 196

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
            D A +L D+++A         ++ LV  L +   + E+E+L  K+L  GV P+    ++
Sbjct: 197 HDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNI 256

Query: 382 MIRELCLGG 390
            ++ LC  G
Sbjct: 257 FVQGLCREG 265


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 153/312 (49%), Gaps = 6/312 (1%)

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
           M    NL  +A    +A+ + R   E    P+   Y ++I   C+ G +  A EL+  M 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLFR---EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
              + P +  +  +I+G C AGR  DA G FK +    C  +++ ++ L+D + + G +E
Sbjct: 58  DRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE 117

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
            A ++   M      C PNVVTYT+VI   C  G +  A+ +LD M   GC PN +T S 
Sbjct: 118 EAFQIFESMHTSS-QCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           L++G C  G  D+ + L+ ++   G       Y++L+  L +++RL EA +L   M+ SG
Sbjct: 177 LVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG 236

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
             P  +  + ++   C   QV   F L + + + G    V +  ++ ++ GLCR     +
Sbjct: 237 CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVIN--YNTVIAGLCRDARLDD 294

Query: 432 AAKLARFMLKKR 443
           A  L + M+  R
Sbjct: 295 AQALLKQMVAAR 306



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 177/373 (47%), Gaps = 21/373 (5%)

Query: 87  QSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142
           +  ++    MYN      C+  R+ +     +++V+     GC  +V     +  L  ++
Sbjct: 199 RRGFQPDVIMYNTLLNGLCKSRRLDE----ALELVQLMIRSGCYPTVVTYNSLMELFCRS 254

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           +  + A  +++ M E    PD I YN VI   C    +  A  L+K M      PD+ITY
Sbjct: 255 KQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITY 314

Query: 203 VSMIKGFCNAGR------LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
            ++I G C   R      LE AC + ++MK+ GC  N   Y+ +++G+CR    ++AL L
Sbjct: 315 STIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALAL 374

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M     +  P++ +++ VI   C    +  A  I   M    C PN V  + LI G 
Sbjct: 375 LRRMIDS--EVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
              G +D+A ++ + +V   S   G   Y+S++  L    R++EA ++   M+     PD
Sbjct: 433 SKGGEVDKAVRVFELMVE--SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPD 490

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G +   +IR LC    V E + L++ +E  GF  +++  +++VL+  LC+K    +A  +
Sbjct: 491 GASYGALIRGLCRVSCVEEAYELFQAVEAKGF--AMEVGVYNVLVNELCKKKRLSDAHGV 548

Query: 436 ARFMLKKRIWLQG 448
           A  +++     QG
Sbjct: 549 ANKLIEAGYKQQG 561



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 173/351 (49%), Gaps = 11/351 (3%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I++++   E GC  +V    V+     KA   ++   +L++M     +PD I+YN ++  
Sbjct: 156 IELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNG 215

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C+   +  A EL++ M     YP ++TY S+++ FC + +++ A  L +VM   GC  +
Sbjct: 216 LCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPD 275

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC------GKGMM 287
           ++ Y+ ++ G+CR   ++ A  LL +M      C P+V+TY+++I   C          +
Sbjct: 276 VINYNTVIAGLCRDARLDDAQALLKQM--VAARCVPDVITYSTIIDGLCKDWRVDADWKL 333

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           + A  IL+ M+  GC PN  T + +I+G C      +A  L+ +++    V     +S +
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMV 393

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  L ++  L  A K+F  M     KP+ +A + +I  L  GG+V +   ++E + +  F
Sbjct: 394 IGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SF 452

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
              V +  ++ +L GLC      EA ++   M+ K  +  G     ++  L
Sbjct: 453 RPGVAT--YNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGL 501



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 138/265 (52%), Gaps = 9/265 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC+  +L + A+ +L  M E    P+ I Y+ ++   C+ G       L++
Sbjct: 137 VTYTTVINGLCKDGKL-DRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQ 195

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      PD+I Y +++ G C + RL++A  L ++M R GC   +V Y++L++  CR  
Sbjct: 196 EMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSK 255

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++RA  L+  M + G  C P+V+ Y +VI   C    + +A  +L +M A  C P+ +T
Sbjct: 256 QVDRAFRLIQVMSERG--CPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVIT 313

Query: 309 ISTLIKGFCVEGNLDEAYQL------IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            ST+I G C +  +D  ++L      ++ +   G   + G Y+ ++  L R ++ ++A  
Sbjct: 314 YSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALA 373

Query: 363 LFSKMLASGVKPDGLACSVMIRELC 387
           L  +M+ S V PD  + S++I  LC
Sbjct: 374 LLRRMIDSEVVPDLSSFSMVIGSLC 398


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 4/292 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
            + VL K+ +  L P  + +  ++   C +G M     L   M +  L P++ TY  +I 
Sbjct: 116 GLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIIN 175

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
               +G+  +A G  K M++ GC  N+V YS L+DG C  G M+ A  +   M  +G  C
Sbjct: 176 SLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKG--C 233

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +PNV TYTS++  +C    ++EA+ +LD     G  P+ VT +T+I G C  G    A Q
Sbjct: 234 TPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQ 293

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L   + A G   +   Y  L+  L +   L+EA  LF +M  S VKP+ +  +++I  LC
Sbjct: 294 LFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLC 353

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
             G++ +G  L+  +   G   +V +  ++ L+  LC++   +EA KL R M
Sbjct: 354 KCGKIKDGKELFSRLIDEGLKPNVYT--YTALVGALCKEGLIIEAHKLFRKM 403



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 179/352 (50%), Gaps = 9/352 (2%)

Query: 92  HS-SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150
           HS S + N  C + R+    S++  +++   E   V    ++     LC + ++ ++ M 
Sbjct: 98  HSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLN---GLCMEGKM-DQVMM 153

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +   M    L+P+   YN +I    + G    A   +K M  +   P+++ Y ++I G+C
Sbjct: 154 LYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYC 213

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G++++A  +F +M   GC  N+  Y++L++G C++  +E A++LL E  ++G    P+
Sbjct: 214 LRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKG--LVPD 271

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           +VT+T++I   C  G    A  +   + A G  PN +T   L+ G C  GNL+EA+ L  
Sbjct: 272 IVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQ 331

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++       +   Y+ L+  L +  ++K+ ++LFS+++  G+KP+    + ++  LC  G
Sbjct: 332 EMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEG 391

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            ++E   L+  +E+ G   + D   ++V++ G  +      A +L   M+ +
Sbjct: 392 LIIEAHKLFRKMEEDG--CTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNR 441



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 134/259 (51%), Gaps = 4/259 (1%)

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L K +  + +  DI +   +I  FC+  R++    +   + + G   ++V ++ LL+G+C
Sbjct: 84  LSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLC 143

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
             G M++ + L  +M   G    PNV TY  +I      G   EALG L +ME +GC PN
Sbjct: 144 MEGKMDQVMMLYDDMLVRG--LQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPN 201

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  STLI G+C+ G +DEA  + D +V+ G   +   Y+SL+    + +R++EA +L  
Sbjct: 202 VVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLD 261

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           + L  G+ PD +  + +I  LC  G+ L    L+  I   G   ++ +  + VLL GLC+
Sbjct: 262 ETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMT--YGVLLDGLCK 319

Query: 426 KNHSVEAAKLARFMLKKRI 444
             +  EA  L + M +  +
Sbjct: 320 HGNLEEAFALFQEMQRSTV 338



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 131/288 (45%), Gaps = 37/288 (12%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G   +V    VI N   K+  ANEA+  L++M +    P+ + Y+ +I  +C +G M  A
Sbjct: 162 GLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEA 221

Query: 184 -------------------DELMKG----------MGLID------LYPDIITYVSMIKG 208
                                LM G          + L+D      L PDI+T+ ++I G
Sbjct: 222 RSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISG 281

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C AGR   A  LF+ +  HG   N++ Y  LLDG+C+ G++E A  L  EM++      
Sbjct: 282 LCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQR--STVK 339

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           PN+V YT +I   C  G +K+   +  R+   G  PN  T + L+   C EG + EA++L
Sbjct: 340 PNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKL 399

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
             K+   G       Y+ ++   ++ K    A +L  +M+  G   D 
Sbjct: 400 FRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADA 447



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 2/214 (0%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  +V     + N   K     EA+ +L +     L PD + +  +I   C  G  +A
Sbjct: 231 KGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLA 290

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +L + +      P+I+TY  ++ G C  G LE+A  LF+ M+R     NLV Y+ L+D
Sbjct: 291 AQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILID 350

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            +C+ G ++   EL   +  EG    PNV TYT+++   C +G++ EA  +  +ME  GC
Sbjct: 351 SLCKCGKIKDGKELFSRLIDEG--LKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGC 408

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
            P++   + +I+GF    +   A QL++++V  G
Sbjct: 409 TPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRG 442


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 166/324 (51%), Gaps = 17/324 (5%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C  +  +M  + +LC   +    A+ +LR+MP    RP+ + YN VI  FC +G + AA 
Sbjct: 115 CTTTFNIM--LRHLCATGKPV-RALELLRQMP----RPNAVTYNTVIAGFCARGRVQAAL 167

Query: 185 ELMKGM---GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSAL 240
           E+M+ M   G I   PD  TY ++I G+C  GR+EDA  +F  M   G  A + V Y+AL
Sbjct: 168 EVMREMRERGGIA--PDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNAL 225

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G C +G ++ AL+   +M + G   +  V TY  ++          +A  +L+ M+  
Sbjct: 226 IGGYCDVGKLDVALQYREDMVQRG--IAMTVATYNLLMHALFMDARASDAYAVLEEMQKN 283

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G +P+  T + LI G+C EGN  +A ++ +++   G  ++   Y+SL+    R  +++E 
Sbjct: 284 GFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQET 343

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           ++LF+  +  G++PD +  + +I   C GG +   + +  ++EK       D   ++ L+
Sbjct: 344 DRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRI--PPDDMTYNTLM 401

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
            G C      EA  L   M K+ I
Sbjct: 402 RGFCLLGRLDEARTLIDEMTKRGI 425



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 146/266 (54%), Gaps = 6/266 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARL----ANEAMWVLRKMPEFDLRPDTIIYNN 169
           +DV   Y+E+     + M    +NL   A      A++A  VL +M +    PD   YN 
Sbjct: 235 LDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNI 294

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I  +C++G+   A E+ + M    +    +TY S+I  F   G++++   LF V  + G
Sbjct: 295 LINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKG 354

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              ++V Y+AL++  C  G MERA E++ EMEK+     P+ +TY ++++ FC  G + E
Sbjct: 355 IRPDVVMYNALINSHCTGGDMERAYEIMAEMEKK--RIPPDDMTYNTLMRGFCLLGRLDE 412

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  ++D M   G  P+ V+ +TLI G+ ++G++ +A ++ D+++  G   +   Y++L+ 
Sbjct: 413 ARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQ 472

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPD 375
            L + ++  +AE L  +M+A G+ PD
Sbjct: 473 GLCKIRQGDDAENLMKEMVAKGITPD 498



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 150/343 (43%), Gaps = 47/343 (13%)

Query: 86  LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM--KVIFNLC 139
           L+   R ++  YN      C   R++      ++V+   +E G +   K     +I   C
Sbjct: 139 LRQMPRPNAVTYNTVIAGFCARGRVQA----ALEVMREMRERGGIAPDKYTYATLISGWC 194

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA-----DELMKGMGLI- 193
           +  R+ +        + + ++ P  ++YN +I  +C+ G +  A     D + +G+ +  
Sbjct: 195 KIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTV 254

Query: 194 -----------------DLY------------PDIITYVSMIKGFCNAGRLEDACGLFKV 224
                            D Y            PD+ TY  +I G+C  G  + A  +F+ 
Sbjct: 255 ATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEE 314

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M + G  A  V Y++L+    R G ++    L     K+G    P+VV Y ++I   C  
Sbjct: 315 MSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKG--IRPDVVMYNALINSHCTG 372

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G M+ A  I+  ME     P+ +T +TL++GFC+ G LDEA  LID++   G       Y
Sbjct: 373 GDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSY 432

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           ++L+        +K+A ++  +M+  G  P  +  + +I+ LC
Sbjct: 433 NTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLC 475



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 88/160 (55%), Gaps = 2/160 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +RPD ++YN +I   C  GDM  A E+M  M    + PD +TY ++++GFC  GRL++A 
Sbjct: 355 IRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEAR 414

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M + G   +LV+Y+ L+ G    G ++ AL +  EM  +G   +P ++TY ++IQ
Sbjct: 415 TLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKG--FNPTLMTYNALIQ 472

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
             C      +A  ++  M A G  P+  T  +LI+G   E
Sbjct: 473 GLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTE 512


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 143/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P++ T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G+  SV
Sbjct: 393 KKGDVWXGSKLLKEMQRDGYKPSV 416



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++  + +++ D +    ++G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKM-DDANVLFDEM---LDKGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD  TY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSVVT 418


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 175/342 (51%), Gaps = 12/342 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C + R+++   +    V+    +GC+  V     +     + R A+EA  +L ++PE ++
Sbjct: 256 CGLGRVREAARL----VDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNV 311

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
               +++N VI     +G +  A EL + MGL    PD  TY  ++ G C  GR+  A  
Sbjct: 312 ----VLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVR 367

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L + M++ G A N+V Y+ +L   C+ G  +    LL EM  +G   + N   Y  +I  
Sbjct: 368 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKG--LTLNSQGYNGMIYA 425

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G M EA+G++  M + GC P+  + +T+I   C    ++EA  + + ++  G V++
Sbjct: 426 LCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVAN 485

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  Y++++  L+R  R ++A +L  +M+  G   D ++ + +I+ +C  G V     L E
Sbjct: 486 GITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLE 545

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           ++ + G   +  S  +++L+  LC++    +A +L++ ML +
Sbjct: 546 EMAEKGIKPNNVS--YNILISELCKERRVRDALELSKQMLNQ 585



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 156/332 (46%), Gaps = 32/332 (9%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R ANEA+ +LR M      PD ++Y  VI   C++G +  A  L+  M L+    
Sbjct: 185 LCRLGR-ANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAA 243

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ T+  +++G C  GR+ +A  L   M   GC   ++ Y  LL G+CR+   + A  +L
Sbjct: 244 DVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAML 303

Query: 258 GEMEK---------------EG--------------GDCSPNVVTYTSVIQIFCGKGMMK 288
           G + +               EG                C P+  TY+ ++   C  G + 
Sbjct: 304 GRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIS 363

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            A+ +L  ME  G APN VT + ++  FC  G  D+   L++++ A G   +   Y+ ++
Sbjct: 364 SAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMI 423

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L +  R+ EA  L  +M + G  PD  + + +I  LC   Q+ E   ++E++ + G +
Sbjct: 424 YALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVV 483

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           +  +   ++ ++  L R     +A +LA+ M+
Sbjct: 484 A--NGITYNTIIHALLRDGRWQDAVRLAKEMI 513



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 160/324 (49%), Gaps = 10/324 (3%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++ E    +GC        ++ + LC+  R+++ A+ +LR+M +    P+ + Y  V+  
Sbjct: 332 ELYETMGLKGCQPDAHTYSILMHGLCKLGRISS-AVRLLREMEKKGFAPNVVTYTIVLHS 390

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+ G       L++ M    L  +   Y  MI   C  GR+++A GL + M+  GC  +
Sbjct: 391 FCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPD 450

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           + +Y+ ++  +C    ME A  +   + +EG     N +TY ++I      G  ++A+ +
Sbjct: 451 ICSYNTIIYHLCNNEQMEEAEHMFENLLEEG--VVANGITYNTIIHALLRDGRWQDAVRL 508

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M   GC+ + V+ + LIK  C +GN+D +  L++++   G   +   Y+ L+ EL +
Sbjct: 509 AKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 568

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            +R+++A +L  +ML  G+ PD +  + +I  LC  G +     L E +       +V  
Sbjct: 569 ERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHN----ENVHP 624

Query: 414 DI--HSVLLLGLCRKNHSVEAAKL 435
           DI  +++L+   C+     +AA L
Sbjct: 625 DIITYNILISWHCKVRLLDDAAML 648



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 145/317 (45%), Gaps = 9/317 (2%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIA 182
           G   S +   V+ ++  +A    +A+ + R+M   D + P T  +    R  C  G    
Sbjct: 134 GVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANE 193

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L++GM      PD + Y ++I   C+ G + +A  L   M   GCAA++  +  ++ 
Sbjct: 194 ALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVR 253

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C LG +  A  L+  M  +G  C P V+TY  ++Q  C      EA  +L R+  L  
Sbjct: 254 GMCGLGRVREAARLVDRMMTKG--CMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL-- 309

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
             N V  +T+I G   EG L EA +L + +   G       YS L+  L +  R+  A +
Sbjct: 310 --NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVR 367

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           L  +M   G  P+ +  ++++   C  G   +   L E++   G   +++S  ++ ++  
Sbjct: 368 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL--TLNSQGYNGMIYA 425

Query: 423 LCRKNHSVEAAKLARFM 439
           LC+     EA  L + M
Sbjct: 426 LCKDGRMDEAMGLIQEM 442



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 142/301 (47%), Gaps = 6/301 (1%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
           Q      S + +  C++ RI    S  + ++   +++G   +V    ++ +   K  + +
Sbjct: 343 QPDAHTYSILMHGLCKLGRI----SSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 398

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +   +L +M    L  ++  YN +I   C+ G M  A  L++ M      PDI +Y ++I
Sbjct: 399 DTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 458

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
              CN  ++E+A  +F+ +   G  AN + Y+ ++  + R G  + A+ L  EM   G  
Sbjct: 459 YHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG-- 516

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           CS +VV+Y  +I+  C  G +  +L +L+ M   G  PN V+ + LI   C E  + +A 
Sbjct: 517 CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL 576

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L  +++  G       Y++L+  L +   +  A  L  K+    V PD +  +++I   
Sbjct: 577 ELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWH 636

Query: 387 C 387
           C
Sbjct: 637 C 637



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 34/235 (14%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I+ LC+  R+ +EAM ++++M      PD   YN +I   C    M  A+ + + +   
Sbjct: 422 MIYALCKDGRM-DEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEE 480

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  + ITY ++I      GR +DA  L K M  HGC+ ++V+Y+ L+  +C+ G+++R+
Sbjct: 481 GVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRS 540

Query: 254 LELLGEMEKEG---------------------------------GDCSPNVVTYTSVIQI 280
           L LL EM ++G                                    +P++VTY ++I  
Sbjct: 541 LVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLING 600

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            C  G M  AL +L+++      P+ +T + LI   C    LD+A  L+++ +A 
Sbjct: 601 LCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAA 655



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 95/186 (51%), Gaps = 4/186 (2%)

Query: 118 EAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           E   EEG V + +    +I  L    R   +A+ + ++M       D + YN +I+  C+
Sbjct: 475 ENLLEEGVVANGITYNTIIHALLRDGRW-QDAVRLAKEMILHGCSLDVVSYNGLIKAMCK 533

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
            G++  +  L++ M    + P+ ++Y  +I   C   R+ DA  L K M   G A ++V 
Sbjct: 534 DGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVT 593

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y+ L++G+C++G M  AL LL ++  E  +  P+++TY  +I   C   ++ +A  +L+R
Sbjct: 594 YNTLINGLCKMGWMHAALNLLEKLHNE--NVHPDIITYNILISWHCKVRLLDDAAMLLNR 651

Query: 297 MEALGC 302
             A  C
Sbjct: 652 AMAAVC 657



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 30/251 (11%)

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L ++ +R G   +  +Y+ +L  + R      AL L   M        P   T+    + 
Sbjct: 126 LDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRD-RVPPTTFTFGVAARA 184

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G   EAL +L  M   GC P+ V   T+I   C +G + EA  L+++++  G  + 
Sbjct: 185 LCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAAD 244

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC----------LGG 390
              +  +V  +    R++EA +L  +M+  G  P  +    +++ LC          + G
Sbjct: 245 VNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLG 304

Query: 391 QVLE----------GFCLYED--------IEKIGFLS-SVDSDIHSVLLLGLCRKNHSVE 431
           +V E          G CL E          E +G      D+  +S+L+ GLC+      
Sbjct: 305 RVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISS 364

Query: 432 AAKLARFMLKK 442
           A +L R M KK
Sbjct: 365 AVRLLREMEKK 375



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 115 DVVEAYKE---EGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           D V   KE    GC + V     +I  +C+   + + ++ +L +M E  ++P+ + YN +
Sbjct: 504 DAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNV-DRSLVLLEEMAEKGIKPNNVSYNIL 562

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I   C++  +  A EL K M    L PDI+TY ++I G C  G +  A  L + +     
Sbjct: 563 ISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 622

Query: 231 AANLVAYSALLDGICRLGSMERALELL 257
             +++ Y+ L+   C++  ++ A  LL
Sbjct: 623 HPDIITYNILISWHCKVRLLDDAAMLL 649


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 150/293 (51%), Gaps = 15/293 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC+ +++  +A  +  +M +  + P    Y  +I  FC+ G +  A      M  
Sbjct: 458 KVIGFLCDASKV-EKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLR 516

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
            +  P+++TY S+I  +  A ++ DA  LF++M   G   N+V Y+AL+DG C+ G +++
Sbjct: 517 DNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDK 576

Query: 253 ALELLGEMEKE-------------GGDC-SPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A ++   M+ +               DC +PN++TY +++   C    ++EA  +LD M 
Sbjct: 577 ACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMS 636

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             GC PN++    LI GFC  G L+ A ++  K+   G   +   YSSL+  L + KRL 
Sbjct: 637 VNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLD 696

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
              K+ SKML +   P+ +  + MI  LC  G+  E + L   +E++G   +V
Sbjct: 697 LVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNV 749



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 144/303 (47%), Gaps = 18/303 (5%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  K+ G V SV    ++ +   KA L  +A     +M   +  P+ + Y ++I  + 
Sbjct: 475 LFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYL 534

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK--------- 226
           +   +  A++L + M L    P+++TY ++I G C AG+++ AC ++  M+         
Sbjct: 535 KARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDID 594

Query: 227 ------RHGC-AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
                  + C   N++ Y AL+DG+C+   +E A ELL  M   G  C PN + Y ++I 
Sbjct: 595 MYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNG--CEPNQIVYDALID 652

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            FC  G ++ A  +  +M   G  PN  T S+LI     E  LD   +++ K++      
Sbjct: 653 GFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTP 712

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+ ++  L +  + +EA +L  KM   G  P+ +  + MI      G++ +   LY
Sbjct: 713 NVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELY 772

Query: 400 EDI 402
            D+
Sbjct: 773 RDM 775



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 180/417 (43%), Gaps = 18/417 (4%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM--S 104
           +  L   + +L    V+EV++       +  + FF+WA+ Q  Y H+  +YN   E+   
Sbjct: 88  QNFLRQFRGRLSEPLVVEVMN--LVKHPEFCVEFFLWASRQIGYSHTPVVYNALIELLCC 145

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
               N  +    +   +++   +  K++  +   C +  + N A+  L ++ +F  +   
Sbjct: 146 NAVNNDRVSHKFLMQIRDDDRELLRKLLNFLIQKCCRNGMWNVALEELGRLKDFGYKASP 205

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
             YN +I++F     +  A  + + M       D  T        C AGR  DA  L   
Sbjct: 206 TTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSL--- 262

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           +++     + V Y+ ++ G+C     + A+++L  M      C PNVVTY  ++    GK
Sbjct: 263 LEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSIS--CIPNVVTYRILLSGCLGK 320

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G +     IL  M   GC PNR   ++L+  +C   +   AY+L  K++  G       Y
Sbjct: 321 GQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLY 380

Query: 345 SSLV------VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
           +  +       EL  +  L+ AEK +S+ML  GV  + +  S   R LC  G+  + F +
Sbjct: 381 NIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEI 440

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
             ++   GF+   D   +S ++  LC  +  VE A L    +KK   +   Y   I+
Sbjct: 441 ICEMMSKGFVP--DDSTYSKVIGFLCDAS-KVEKAFLLFEEMKKNGIVPSVYTYTIL 494



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 150/320 (46%), Gaps = 7/320 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G   ++     + N   K +  +  + VL KM E    P+ +IY ++I   C+ G   
Sbjct: 672 ERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTE 731

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  LM  M  +  YP++ITY +MI GF   G++E    L++ M   GCA N + Y  L+
Sbjct: 732 EAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLI 791

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +  C  G ++ A  LL EM++       ++ +Y  +I+ F  + +   ++G+LD +    
Sbjct: 792 NHCCSTGLLDEAHRLLDEMKQTYW--PRHISSYRKIIEGFNREFIT--SIGLLDELSENE 847

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS--VSSGGCYSSLVVELVRTKRLKE 359
             P       LI  F   G L+ A  L++++ +  S  V++   Y+SL+  L    ++ +
Sbjct: 848 SVPVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDK 907

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI-EKIGFLSSVDSDIHSV 418
           A +L++ M+   V P+      +I+ L   G+  E   L + I + +  + S   +  + 
Sbjct: 908 AFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSICQMVCHVCSNFVNYKTT 967

Query: 419 LLLGLCRKNHSVEAAKLARF 438
             L LC K+  +    + R+
Sbjct: 968 RALPLCIKHFLISTGFMKRY 987



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 157/376 (41%), Gaps = 62/376 (16%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           KEE    +V   +++  LCE A L  EAM +L +M      P+ + Y  ++     KG +
Sbjct: 265 KEEFVPDTVFYNRMVSGLCE-ASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQL 323

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV----- 235
                ++  M     YP+   + S++  +C +     A  LFK M + GC    +     
Sbjct: 324 GRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIF 383

Query: 236 ---------------------AYSALLD---------------GICRLGSMERALELLGE 259
                                AYS +LD                +C  G  ++A E++ E
Sbjct: 384 IGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICE 443

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M  +G    P+  TY+ VI   C    +++A  + + M+  G  P+  T + LI  FC  
Sbjct: 444 MMSKGF--VPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKA 501

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G + +A    D+++      +   Y+SL+   ++ +++ +A KLF  ML  G KP+ +  
Sbjct: 502 GLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTY 561

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI----------------HSVLLLGL 423
           + +I   C  GQ+ +   +Y  ++  G + S D D+                +  L+ GL
Sbjct: 562 TALIDGHCKAGQIDKACQIYARMQ--GDIESSDIDMYFKLDDNDCETPNIITYGALVDGL 619

Query: 424 CRKNHSVEAAKLARFM 439
           C+ N   EA +L   M
Sbjct: 620 CKANRVEEAHELLDTM 635



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 147/328 (44%), Gaps = 18/328 (5%)

Query: 119 AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
            ++ +GC +        ++LC+  R   +A+ +L K    +  PDT+ YN ++   CE  
Sbjct: 235 GFRMDGCTLGC----FAYSLCKAGR-CGDALSLLEKE---EFVPDTVFYNRMVSGLCEAS 286

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
               A +++  M  I   P+++TY  ++ G    G+L     +  +M   GC  N   ++
Sbjct: 287 LFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFN 346

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC------GKGMMKEALG 292
           +L+   C+      A +L  +M K G  C P  + Y   I   C      G  +++ A  
Sbjct: 347 SLVHAYCKSRDYSYAYKLFKKMIKCG--CQPGYLLYNIFIGSICSNEELPGSDLLELAEK 404

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
               M  LG   N+V +S   +  C  G  D+A+++I ++++ G V     YS ++  L 
Sbjct: 405 AYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLC 464

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              ++++A  LF +M  +G+ P     +++I   C  G + +    ++++ +     +V 
Sbjct: 465 DASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVV 524

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFML 440
           +  ++ L+    +     +A KL   ML
Sbjct: 525 T--YTSLIHAYLKARKVFDANKLFEMML 550


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 152/302 (50%), Gaps = 4/302 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           R + + Y N+I   CE G +  A E    M     +P + TY  ++   C +GR  +A  
Sbjct: 252 RRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALS 311

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M+  GC  N+  Y+ L+D +C+ G M+ AL++L EM ++G   +P+VV + ++I  
Sbjct: 312 LFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKG--VAPSVVPFNALIGS 369

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +C +GMM++A+G+L  ME+    PN  T + LI GFC   ++D A  L++K+V       
Sbjct: 370 YCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPD 429

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+  L     +  A +LF  M+  G  PD    +  +  LC  G+V E   + E
Sbjct: 430 VVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILE 489

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
            +++       +   ++ L+ G C+      AA L + ML +         + +++ L+K
Sbjct: 490 SLKEKHV--KANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRK 547

Query: 461 SG 462
            G
Sbjct: 548 EG 549



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 152/346 (43%), Gaps = 43/346 (12%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+ I  N ++  +C+ G+M  A      +   +  PD+ TY S++ G+C    +E ACG+
Sbjct: 187 PNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGV 246

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F VM R     N V+Y+ L+ G+C  G +  ALE    M ++G  C P V TYT ++   
Sbjct: 247 FCVMPRR----NAVSYTNLIHGLCEAGKLHEALEFWARMREDG--CFPTVRTYTVLVCAL 300

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS- 340
           C  G   EAL +   M   GC PN  T + LI   C EG +DEA ++++++V  G   S 
Sbjct: 301 CESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSV 360

Query: 341 --------GGC--------------------------YSSLVVELVRTKRLKEAEKLFSK 366
                     C                          Y+ L+    R K +  A  L +K
Sbjct: 361 VPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNK 420

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M+ S + PD +  + +I  LC  G V     L+  + + GF  S D    +  ++ LCR 
Sbjct: 421 MVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGF--SPDQWTFNAFMVCLCRM 478

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
               EA ++   + +K +         +++   K+G  E   +L K
Sbjct: 479 GRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFK 524



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 147/286 (51%), Gaps = 4/286 (1%)

Query: 121 KEEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           +E+GC  +V+   V+   LCE  R   EA+ +  +M E    P+   Y  +I   C++G 
Sbjct: 282 REDGCFPTVRTYTVLVCALCESGR-ELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGR 340

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           M  A +++  M    + P ++ + ++I  +C  G +EDA G+  +M+      N+  Y+ 
Sbjct: 341 MDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNE 400

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+ G CR  SM+RA+ LL +M +     SP+VVTY ++I   C  G++  A  +   M  
Sbjct: 401 LICGFCRGKSMDRAMALLNKMVE--SKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIR 458

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G +P++ T +  +   C  G + EA+Q+++ +      ++   Y++L+    +  +++ 
Sbjct: 459 DGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEH 518

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           A  LF +MLA    P+ +  +VMI  L   G+V +   L ED+ K 
Sbjct: 519 AASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKF 564



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 164/352 (46%), Gaps = 11/352 (3%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    +I  LCE  +L +EA+    +M E    P    Y  ++   CE G  + A  L 
Sbjct: 255 AVSYTNLIHGLCEAGKL-HEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLF 313

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M      P++ TY  +I   C  GR+++A  +   M   G A ++V ++AL+   C+ 
Sbjct: 314 GEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKR 373

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ME A+ +LG ME +     PNV TY  +I  FC    M  A+ +L++M     +P+ V
Sbjct: 374 GMMEDAVGVLGLMESK--KVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVV 431

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T +TLI G C  G +D A +L   ++  G       +++ +V L R  R+ EA ++   +
Sbjct: 432 TYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESL 491

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
               VK +  A + +I   C  G++     L++ +     L   +S   +V++ GL RK 
Sbjct: 492 KEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLP--NSITFNVMIDGL-RKE 548

Query: 428 HSVEAAKL-----ARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
             V+ A L     A+F +K  +      V+++++        E++  L   G
Sbjct: 549 GKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSG 600



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 126/250 (50%), Gaps = 3/250 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           + +  + AM +L KM E  L PD + YN +I   CE G + +A  L + M      PD  
Sbjct: 407 RGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQW 466

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T+ + +   C  GR+ +A  + + +K     AN  AY+AL+DG C+ G +E A  L   M
Sbjct: 467 TFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRM 526

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             E  +C PN +T+  +I     +G +++A+ +++ M      P   T + L++    E 
Sbjct: 527 LAE--ECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEY 584

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           + D A ++++++++ G   +   Y++ +       RL+EAE++  K+   GV  D    +
Sbjct: 585 DFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYN 644

Query: 381 VMIREL-CLG 389
           ++I    C+G
Sbjct: 645 LLINAYGCMG 654



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 160/336 (47%), Gaps = 41/336 (12%)

Query: 121 KEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           +E GC  +V    V+ + LC++ R+ +EA+ +L +M E  + P  + +N +I  +C++G 
Sbjct: 317 RERGCEPNVYTYTVLIDYLCKEGRM-DEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGM 375

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           M  A  ++  M    + P++ TY  +I GFC    ++ A  L   M     + ++V Y+ 
Sbjct: 376 MEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNT 435

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVT-------------------------- 273
           L+ G+C +G ++ A  L   M ++G   SP+  T                          
Sbjct: 436 LIHGLCEVGVVDSASRLFRLMIRDGF--SPDQWTFNAFMVCLCRMGRVGEAHQILESLKE 493

Query: 274 ---------YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
                    YT++I  +C  G ++ A  +  RM A  C PN +T + +I G   EG + +
Sbjct: 494 KHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQD 553

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  L++ +       +   Y+ LV E+++      A ++ +++++SG +P+ +  +  I+
Sbjct: 554 AMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIK 613

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             C  G++ E   +   I+  G L  +DS I+++L+
Sbjct: 614 AYCSQGRLEEAEEMVIKIKNEGVL--LDSFIYNLLI 647



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 119/275 (43%), Gaps = 31/275 (11%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           E C+ +     V+ +   K     +AM ++  M +FD++P    YN ++    ++ D   
Sbjct: 529 EECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDR 588

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A+E++  +      P+++TY + IK +C+ GRLE+A  +   +K  G   +   Y+ L++
Sbjct: 589 ANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLIN 648

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA------------ 290
               +G ++ A  +L  M   G  C P+ +TY+ +++    +   KE             
Sbjct: 649 AYGCMGLLDSAFGVLRRM--FGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTN 706

Query: 291 -------------LGI----LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
                         GI     ++M   GC PN  T S LI G C  G L+ A+ L   + 
Sbjct: 707 ISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMR 766

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            GG   S   ++SL+    +     EA  L   M+
Sbjct: 767 EGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMM 801



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 140/325 (43%), Gaps = 28/325 (8%)

Query: 64  EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE 123
           E+L+R   S  Q  +    + A   +Y          C   R+++   ++I +    K E
Sbjct: 591 EILNRLISSGYQPNV--VTYTAFIKAY----------CSQGRLEEAEEMVIKI----KNE 634

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR-LFCEKGDMIA 182
           G ++   +  ++ N      L + A  VLR+M      P  + Y+ +++ L  EK     
Sbjct: 635 GVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEG 694

Query: 183 ADELMKGMGLIDLYPDIITYVSMIK-GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
           ++ +   + L ++  D     S I  G            LF+ M   GC  NL  YS L+
Sbjct: 695 SNPVGLDVSLTNISVDNTDIWSKIDFGITTV--------LFEKMAECGCVPNLNTYSKLI 746

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G+C++G +  A  L   M +EGG  SP+ + + S++   C  GM  EA+ +LD M    
Sbjct: 747 NGLCKVGRLNVAFSLYHHM-REGG-ISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECS 804

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
              +  +   LI G   + N ++A  +   ++  G       +  L+  L +T  + +  
Sbjct: 805 HLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCS 864

Query: 362 KLFSKMLASGVKPDGLACSVMIREL 386
           +L + M  +G +      S++++EL
Sbjct: 865 ELLNLMEKNGCRLHPETYSMLMQEL 889


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 180/374 (48%), Gaps = 39/374 (10%)

Query: 110 PSIIIDVVE-AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM---PEFDLRPDTI 165
           P   +D+    + E  C  +VK    + N+  +  L N A+     +      ++ P+ +
Sbjct: 112 PEKAVDLFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNAL 171

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            +N VI+  C  G +  A E+ + + L +  PD  TY +++ G C   R+++A  L   M
Sbjct: 172 TFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEM 231

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
           +  G   NLVA++ L+  +C+ G + RA +L+  M  +G  C PN VTY +++   C KG
Sbjct: 232 QVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKG--CVPNEVTYNALVHGLCLKG 289

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            +++A+ +L++M +  C PN VT  TLI GF ++G   +  +++  + A G   +   YS
Sbjct: 290 KLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYS 349

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           SL+  L +  +  +A +L+ +M+  G  P+ +  S +I  LC  G++ E      +++  
Sbjct: 350 SLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNK 409

Query: 406 GFLSSV--------------DSD--------------IH-----SVLLLGLCRKNHSVEA 432
           G+L +               DS               IH     S+L+ GLC+    +EA
Sbjct: 410 GYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEA 469

Query: 433 AKLARFMLKKRIWL 446
             + + ML + I L
Sbjct: 470 LMVWKQMLSRGIKL 483



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 191/413 (46%), Gaps = 14/413 (3%)

Query: 32  AERFYTHLQKNPN-NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSY 90
           A  FY H+  + + NI     T    + + C + ++ +      ++ +R         +Y
Sbjct: 151 ALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLR----NCAPDNY 206

Query: 91  RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAM 149
            +S+ M+   C+  RI +  S++    +  + EG   ++    V+ + LC+K  L   A 
Sbjct: 207 TYSTLMHG-LCKEERIDEAVSLL----DEMQVEGTFPNLVAFNVLISALCKKGDLGRAAK 261

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            V   M      P+ + YN ++   C KG +  A  L+  M      P+ +T+ ++I GF
Sbjct: 262 LV-DNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGF 320

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
              GR  D   +   ++  G   N   YS+L+ G+C+ G   +A+EL  EM  +G  C P
Sbjct: 321 VMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKG--CGP 378

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           N + Y+++I   C +G + EA G L  M+  G  PN  T S+L++G+   G+  +A  + 
Sbjct: 379 NTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVW 438

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            ++     + +  CYS L+  L +  +  EA  ++ +ML+ G+K D +A S MI   C  
Sbjct: 439 KEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNA 498

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             V +G  L+  +   G +   D   +++LL   C +     A  +   ML +
Sbjct: 499 NLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQ 551



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 123/255 (48%), Gaps = 17/255 (6%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC + +L +EA   L +M      P++  Y++++R + E GD   A  + K M   
Sbjct: 386 LIDGLCREGKL-DEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANN 444

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +   + + Y  +I G C  G+  +A  ++K M   G   ++VAYS+++ G C    +E+ 
Sbjct: 445 NCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQG 504

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+L  +M  +G    P+V+TY  ++  FC +  +  A+ IL+ M   GC P+ +T    +
Sbjct: 505 LKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFL 564

Query: 314 KGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           K      N   +  + +D+               LVV LV+ +R   A K+   M+   +
Sbjct: 565 KTLRENMNPPQDGREFLDE---------------LVVRLVKRQRTIGASKIIEVMMHKFL 609

Query: 373 KPDGLACSVMIRELC 387
            P     +++++++C
Sbjct: 610 LPKASTWAMVVQQVC 624


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 143/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P++ T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G+  SV
Sbjct: 393 KKGDVWTGSKLLKEMQRDGYKPSV 416



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++  + +++ D +    ++G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKM-DDANVLFDEM---LDKGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD  TY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P + TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 VG--LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 169/354 (47%), Gaps = 9/354 (2%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEA 148
           Y + + M +  C+  RI +  S++    +  + +GC  S     V+ N LC+K  LA  A
Sbjct: 205 YTYCTLM-DGLCKADRIDEAVSLL----DEMQIDGCFPSPVTFNVLINGLCKKGDLARVA 259

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             V   M      P+ + YN +I   C KG +  A  L+  M      P+++TY ++I G
Sbjct: 260 KLV-DNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIING 318

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
               GR  D   +  +M+  G   N   YSAL+ G+ + G  + A++L  EM  +  +C 
Sbjct: 319 LVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVK--ECE 376

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
            N + Y++VI   C  G   EAL +L  M    C PN  T S+L+KGF   GN  +A ++
Sbjct: 377 LNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEM 436

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
              +       +  CYS L+  L +  ++KEA  ++++ML  G KPD +A   MI  L  
Sbjct: 437 WKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSN 496

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            G V +   LY ++      S  D   +++LL  LC+++    A  L   ML +
Sbjct: 497 AGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDR 550



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 143/309 (46%), Gaps = 5/309 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  +C K  L ++A+ + R MP    +PD   Y  ++   C+   +  A  L+  M + 
Sbjct: 175 VIKTMC-KVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQID 233

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             +P  +T+  +I G C  G L     L   M   GCA N V Y+ L+ G+C  G +E+A
Sbjct: 234 GCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKA 293

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + LL  M      C PNVVTY ++I     +G   +   +L  ME  G   N    S LI
Sbjct: 294 ISLLDRM--VSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALI 351

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G   EG   EA QL  ++       +   YS+++  L R  +  EA ++ S+M  +  K
Sbjct: 352 SGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCK 411

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    S +++     G   +   +++D+ K  F  + +   +SVL+ GLC+     EA 
Sbjct: 412 PNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNF--TQNEVCYSVLIHGLCKDGKVKEAM 469

Query: 434 KLARFMLKK 442
            +   ML K
Sbjct: 470 MVWAQMLGK 478



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 124/254 (48%), Gaps = 15/254 (5%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC   +  +EA+ VL +M     +P+   Y+++++ F E G+   A E+ K M   
Sbjct: 385 VIDGLCRDGK-PDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKH 443

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +   + + Y  +I G C  G++++A  ++  M   GC  ++VAY ++++G+   G +E A
Sbjct: 444 NFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDA 503

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+L  EM  +  D  P+VVTY  ++   C +  +  A+ +L+ M   GC P+ VT    +
Sbjct: 504 LQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFL 563

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           +            + +D    G     G     LVV L++ +R+  A K+   ML   + 
Sbjct: 564 RTL---------REKLDPPQDGREFLDG-----LVVRLLKRQRVLGASKIVEVMLQKLLP 609

Query: 374 PDGLACSVMIRELC 387
           P     + ++ +LC
Sbjct: 610 PKPSTWTRVVEDLC 623



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 165/357 (46%), Gaps = 45/357 (12%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP-EFDLRPDTIIYNNVIRLF 174
           V++  + E  VV  K   VIF    KA L  +A+ +  +M  EF+ +     +N+V+ + 
Sbjct: 82  VLDRMRCEKRVVVEKCFVVIFKAYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVI 141

Query: 175 CEKGDMIAADELMK---GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
            ++G    A E      G   +++ P+++T+  +IK                        
Sbjct: 142 IQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKT----------------------- 178

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
                       +C++G ++ A+++  +M      C P+V TY +++   C    + EA+
Sbjct: 179 ------------MCKVGLVDDAVQMFRDMPV--SKCQPDVYTYCTLMDGLCKADRIDEAV 224

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +LD M+  GC P+ VT + LI G C +G+L    +L+D +   G   +   Y++L+  L
Sbjct: 225 SLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGL 284

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
               +L++A  L  +M++S   P+ +    +I  L   G+ L+G  +   +E+ G+   V
Sbjct: 285 CLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGY--HV 342

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG--DEEL 466
           +  ++S L+ GL ++  S EA +L + M  K   L       +++ L + G  DE L
Sbjct: 343 NEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEAL 399


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 162/352 (46%), Gaps = 35/352 (9%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V +V     + N   K    +    V  +M  F + P+   +N +  + C+ GD    
Sbjct: 218 GFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKV 277

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           ++ ++ M      PDI+TY ++I  +C  GRL+DA  L+K+M R G   +LV+Y+AL++G
Sbjct: 278 NKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNG 337

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +C+ G +  A +L   M   G   SP++VTY ++I  +C +G M+E+  +L  M   G +
Sbjct: 338 LCKEGRVREAHQLFHRMVHRG--LSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGIS 395

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+  T   L++G+  EG    A  L+ ++   G   S   YS L+V L R  R   A+ L
Sbjct: 396 PDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNL 455

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL-YEDIEK------------IGFLSS 410
             +M   G KP+    + +I+  C    + E   L  E ++K            IG LS 
Sbjct: 456 LERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSR 515

Query: 411 V--------------------DSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +                    D +I   L  G CR+N   +A  L  F  K+
Sbjct: 516 LSRSMEGESLVGEMVASGMLPDLEICRALFYGYCRENDIDKAESLLSFFAKE 567



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 187/421 (44%), Gaps = 43/421 (10%)

Query: 41  KNPNNI-----------EKTLATVKAKLDSTC-------VIEVLHRCFPSQSQMGIRFFI 82
           +NPNNI              LA +  ++++         +  VL RC  S S   + FF 
Sbjct: 64  QNPNNIVNLICSNLKQHNSNLALLHTEVNALLPHLGAQEISRVLLRC-QSDSFTALSFFN 122

Query: 83  WAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE-- 140
           W       R S+             QN  I++  +   +        + MK +  L E  
Sbjct: 123 WVKNDLGLRPST-------------QNYCIVVHTLAWSRNFS-----QAMKFLCELVELV 164

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K  L +E ++    +   D   D ++++ +++ +   G +       + M  +   P +I
Sbjct: 165 KDDLPSEDVFKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVI 224

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T   ++ G       +    +++ M+R G A NL  ++ L   +C+ G   +  + L +M
Sbjct: 225 TSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKM 284

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           E+EG D  P++VTY ++I  +C KG + +A  +   M   G  P+ V+ + L+ G C EG
Sbjct: 285 EEEGFD--PDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEG 342

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            + EA+QL  ++V  G       Y++L+    +  +++E+  L   M+ +G+ PD   C 
Sbjct: 343 RVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCW 402

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           V++      G+ L    L  ++++ G   S+  DI+S L++ LCR+N    A  L   M 
Sbjct: 403 VLVEGYGKEGKFLSALNLVVELQRFGV--SISQDIYSYLIVALCRENRPFAAKNLLERMS 460

Query: 441 K 441
           K
Sbjct: 461 K 461



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 7/177 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC + R    A  +L +M +   +P+  IYN +I+ FC+  D IA   L+K M ++
Sbjct: 439 LIVALCRENR-PFAAKNLLERMSKDGHKPELEIYNELIKSFCQ-CDCIAEALLLK-MEMV 495

Query: 194 D--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           D  + P++ TY ++I       R  +   L   M   G   +L    AL  G CR   ++
Sbjct: 496 DKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYCRENDID 555

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           +A  LL    KE      +  ++ ++I+I   KG +  +L I D M  +G  PN +T
Sbjct: 556 KAESLLSFFAKEFQ--IHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPNPLT 610


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 164/313 (52%), Gaps = 9/313 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK---GDMIAADELMKGM 190
           V+  LC+  +L N A  V+  M  + + P+ I YN +I  +C+    G M  AD ++K M
Sbjct: 161 VVNGLCKVGKL-NRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEM 219

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + P+ +TY  +I GFC    +  A  +F  M+R G   N+V Y+ L++G+C  G +
Sbjct: 220 VAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKV 279

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           + A+ L  +M     D  PNVVT+  +I  FC    + EA+ + + ME  G  PN +T +
Sbjct: 280 DEAVALRDQM--VSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYT 337

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           TLI  +C +G +++A+ L + ++  G       Y+ L+  L R   +K A  L ++M++ 
Sbjct: 338 TLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSK 397

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
            +  D +  +++I  LC  G+  +   L +++ + G   S     ++ L+ G CR+ + +
Sbjct: 398 KLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPS--HVTYNTLMDGYCREGN-L 454

Query: 431 EAAKLARFMLKKR 443
            AA + R  ++++
Sbjct: 455 RAALIVRTRMERK 467



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 154/296 (52%), Gaps = 7/296 (2%)

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
           +V R+M +  +  + I +N V+   C+ G +  A ++++ M +  + P++ITY ++I G+
Sbjct: 141 FVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGY 200

Query: 210 CNAGR---LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           C  GR   +  A  + K M   G   N V Y+ L+DG C+  ++  A+ + GEM+++G  
Sbjct: 201 CKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQG-- 258

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PNVVTY  +I   C  G + EA+ + D+M +    PN VT + LI GFC    ++EA 
Sbjct: 259 LRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAI 318

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L + +   G   +   Y++L+    +  R+++A  L++ M+  G+ P+    + +I  L
Sbjct: 319 NLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGL 378

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           C  G V     L    E +    S D   +++L+  LC+K  S +A KL   M +K
Sbjct: 379 CRKGDVKAARSLMN--EMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEK 432



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 174/351 (49%), Gaps = 7/351 (1%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLAN--EAMWVLRKMPEFDLRPDTIIYNNVI 171
           DV+E  K  G   +V     + +  C+  R+    +A  +L++M    + P+ + YN +I
Sbjct: 176 DVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILI 235

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
             FC+  ++  A  +   M    L P+++TY  +I G C+ G++++A  L   M      
Sbjct: 236 DGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLE 295

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            N+V ++ L++G C+  ++  A+ L  +MEK+G D  PN +TYT++I  +C  G M++A 
Sbjct: 296 PNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVD--PNAMTYTTLIDAYCKDGRMEDAF 353

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            + + M   G  P   T + LI G C +G++  A  L++++V+    +    Y+ L+  L
Sbjct: 354 ALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSL 413

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +    ++A KL  +M   G+ P  +  + ++   C  G +     +   +E+ G  ++V
Sbjct: 414 CKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANV 473

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            +  H+VL+ G C K    +A  L   ML++ +       + I E + + G
Sbjct: 474 VT--HNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKG 522



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 136/269 (50%), Gaps = 7/269 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC---RLGSMERAL 254
           ++I++  ++ G C  G+L  A  + + MK  G + N++ Y+ L+DG C   R+G M +A 
Sbjct: 154 NVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKAD 213

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            +L EM  +G    PN VTY  +I  FC    +  A+ +   M+  G  PN VT + LI 
Sbjct: 214 AILKEMVAKG--ICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILIN 271

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C +G +DEA  L D++V+     +   ++ L+    + K + EA  LF+ M   GV P
Sbjct: 272 GLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDP 331

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           + +  + +I   C  G++ + F LY  +   G    V +  ++ L+ GLCRK     A  
Sbjct: 332 NAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVST--YNCLIAGLCRKGDVKAARS 389

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           L   M+ K++       + +++ L K G+
Sbjct: 390 LMNEMVSKKLSADVVTYNILIDSLCKKGE 418



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 146/286 (51%), Gaps = 4/286 (1%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTII 166
           +N S  + V    + +G   +V    ++ N LC   ++ +EA+ +  +M   DL P+ + 
Sbjct: 242 ENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKV-DEAVALRDQMVSSDLEPNVVT 300

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           +N +I  FC+   +  A  L   M    + P+ +TY ++I  +C  GR+EDA  L+ +M 
Sbjct: 301 HNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMI 360

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G    +  Y+ L+ G+CR G ++ A  L+ EM  +    S +VVTY  +I   C KG 
Sbjct: 361 DRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSK--KLSADVVTYNILIDSLCKKGE 418

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
            ++A+ +LD M   G  P+ VT +TL+ G+C EGNL  A  +  ++   G  ++   ++ 
Sbjct: 419 SRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNV 478

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           L+       RL++A  L ++ML  G+ P+     ++  E+   G V
Sbjct: 479 LIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFV 524



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 112/229 (48%), Gaps = 13/229 (5%)

Query: 222 FKVMKRHGCAANLVAYSALLDGICRL---GSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
           FK    +G   +L++ + LL G+ +    G ME       EM K       NV+++  V+
Sbjct: 108 FKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYR---EMIKR--KIELNVISFNIVV 162

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ---LIDKVVAG 335
              C  G +  A  +++ M+  G +PN +T +TLI G+C  G + + Y+   ++ ++VA 
Sbjct: 163 NGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAK 222

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   Y+ L+    + + +  A ++F +M   G++P+ +  +++I  LC  G+V E 
Sbjct: 223 GICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEA 282

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             L + +       +V +  H+VL+ G C+     EA  L   M K+ +
Sbjct: 283 VALRDQMVSSDLEPNVVT--HNVLINGFCKNKTVNEAINLFNDMEKQGV 329


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 153/288 (53%), Gaps = 5/288 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+ +L +M    L+PD   YN +IR  C++G +  A E+++ + L    PD+I+Y  +
Sbjct: 241 DEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNIL 300

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           ++   N G+ E+   L   M    C  N+V YS L+  +CR G +E A+ LL  M+++G 
Sbjct: 301 LRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG- 359

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             +P+  +Y  +I  FC +G +  A+  L+ M + GC P+ V  +T++   C  G  D+A
Sbjct: 360 -LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 418

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            ++  K+   G   +   Y+++   L  +     A  +  +M+++G+ PD +  + MI  
Sbjct: 419 LEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISC 478

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           LC  G V + F L  D+    F  SV +  ++++LLG C K H +E A
Sbjct: 479 LCREGMVDKAFELLVDMRSCEFHPSVVT--YNIVLLGFC-KAHRIEDA 523



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 153/298 (51%), Gaps = 6/298 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
            +M+K+    C       E++ +L  M      PD I+   +I+ F    ++  A  +M+
Sbjct: 86  TQMLKIFHRSCRSGNYI-ESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVME 144

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +      PD+  Y ++I GFC   R++DA  +   M+    + + V Y+ ++  +C  G
Sbjct: 145 ILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 203

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ AL++L ++  +  +C P V+TYT +I+    +G + EAL +LD M + G  P+  T
Sbjct: 204 KLDLALKVLDQLLSD--NCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFT 261

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +T+I+G C EG +D A+++I  +   G       Y+ L+  L+   + +E EKL +KM 
Sbjct: 262 YNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMF 321

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +    P+ +  S++I  LC  G++ E   L + +++ G   + D+  +  L+   CR+
Sbjct: 322 SEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL--TPDAYSYDPLIAAFCRE 377



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 147/290 (50%), Gaps = 9/290 (3%)

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C  G+ I +  L++ M      PD+I    +IKGF     +  A  + +++++ G   ++
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG-QPDV 154

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
            AY+AL++G C++  ++ A  +L  M  +  D SP+ VTY  +I   C +G +  AL +L
Sbjct: 155 FAYNALINGFCKMNRIDDATRVLDRMRSK--DFSPDTVTYNIMIGSLCSRGKLDLALKVL 212

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           D++ +  C P  +T + LI+   +EG +DEA +L+D++++ G       Y++++  + + 
Sbjct: 213 DQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKE 272

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
             +  A ++   +   G +PD ++ ++++R L   G+  EG    E +    F    D +
Sbjct: 273 GMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEG----EKLMTKMFSEKCDPN 328

Query: 415 I--HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +  +S+L+  LCR     EA  L + M +K +       D ++    + G
Sbjct: 329 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREG 378



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 110/215 (51%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   ++  EAM +L+ M E  L PD   Y+ +I  FC +G +  A E ++ M   
Sbjct: 335 LITTLCRDGKI-EEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 393

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PDI+ Y +++   C  G+ + A  +F  +   GC+ N  +Y+ +   +   G   RA
Sbjct: 394 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 453

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L ++ EM   G D  P+ +TY S+I   C +GM+ +A  +L  M +    P+ VT + ++
Sbjct: 454 LHMILEMVSNGID--PDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVL 511

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            GFC    +++A  ++D +V  G   +   Y+ L+
Sbjct: 512 LGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLI 546



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 4/181 (2%)

Query: 112 IIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           + I+ +E    +GC+   V    V+  LC+  + A++A+ +  K+ E    P++  YN +
Sbjct: 382 VAIEFLETMISDGCLPDIVNYNTVLATLCKNGK-ADQALEIFGKLGEVGCSPNSSSYNTM 440

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
                  GD I A  ++  M    + PD ITY SMI   C  G ++ A  L   M+    
Sbjct: 441 FSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEF 500

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             ++V Y+ +L G C+   +E A+++L  M   G  C PN  TYT +I+     G   EA
Sbjct: 501 HPSVVTYNIVLLGFCKAHRIEDAIDVLDSM--VGNGCRPNETTYTVLIEGIGFAGYRAEA 558

Query: 291 L 291
           +
Sbjct: 559 M 559



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 70/139 (50%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E GC  +      +F+    +     A+ ++ +M    + PD I YN++I   C +G + 
Sbjct: 427 EVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVD 486

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A EL+  M   + +P ++TY  ++ GFC A R+EDA  +   M  +GC  N   Y+ L+
Sbjct: 487 KAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLI 546

Query: 242 DGICRLGSMERALELLGEM 260
           +GI   G    A+EL  ++
Sbjct: 547 EGIGFAGYRAEAMELANDL 565


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 221/481 (45%), Gaps = 56/481 (11%)

Query: 33   ERFYT----HLQKNPN------NIEKTLATVK---------AKLDSTCVIEVLHRC---- 69
            E+F++    H +KN N      N   T+A++            + S  V  V+ +C    
Sbjct: 1094 EKFHSLIKSHQRKNTNPDPISPNPHYTIASLSFDFSQISSADSVSSAIVRRVIEKCGGVR 1153

Query: 70   ----FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGC 125
                FP      + FF WA     + HS   Y    +++   +   +   +++  K    
Sbjct: 1154 HGIPFPQT----LAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNV 1209

Query: 126  VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
             + V+   ++     KA LA EA+    +M ++  +PD I ++ VI    +K   I A  
Sbjct: 1210 EIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQS 1269

Query: 186  LMKGMGLIDLY-PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
                  L D + PD++ Y S++ G+C AG + +A  +F  MK  G   N+  YS ++D +
Sbjct: 1270 FFDS--LKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDAL 1327

Query: 245  CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            CR G + RA ++  EM   G  C PN +T+ +++++    G  ++ L + ++M+ LGC P
Sbjct: 1328 CRSGQITRAHDVFSEMIDVG--CDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPP 1385

Query: 305  NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG------GCYSSLVVELVRTKRLK 358
            + +T + LI+  C + NL+EA ++++ V  G ++++       GC S L         + 
Sbjct: 1386 DAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKL-------GDVN 1438

Query: 359  EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
             A ++F+KM     +P+ +  ++++R             L +++++       +++ + V
Sbjct: 1439 SAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEI--EPNANTYRV 1496

Query: 419  LLLGLCRKNHSVEAAKLARFMLKKRIWLQG-PYVDKIVEHLKKSGD----EELITNLPKI 473
            L+   C   H   A    + M++++      P  + +++ L+K+G     EEL+  +   
Sbjct: 1497 LISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNR 1556

Query: 474  G 474
            G
Sbjct: 1557 G 1557


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 184/391 (47%), Gaps = 49/391 (12%)

Query: 87  QSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEK 141
           +S Y  +   YN      C+  R K      I++++  K +G    V     +I +LC  
Sbjct: 221 KSGYAPTIVTYNTVLHWYCKKGRFKA----AIELLDHMKSKGVDADVCTYNMLIHDLCRS 276

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM----------- 190
            R+A +   +LR M +  + P+ + YN +I  F  +G ++ A +L+  M           
Sbjct: 277 NRIA-KGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVT 335

Query: 191 --GLID----------------------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
              LID                      L P  ++Y  ++ G C     + A G +  MK
Sbjct: 336 FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMK 395

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           R+G     + Y+ ++DG+C+ G ++ A+ LL EM K+G D  P++VTY+++I  FC  G 
Sbjct: 396 RNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGID--PDIVTYSALINGFCKVGR 453

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
            K A  I+ R+  +G +PN +  STLI   C  G L EA ++ + ++  G       ++ 
Sbjct: 454 FKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNV 513

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           LV  L +  ++ EAE+    M + G+ P+ ++   +I      G+ L+ F +++++ K+G
Sbjct: 514 LVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVG 573

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
              +  +  +  LL GLC+  H  EA K  +
Sbjct: 574 HHPTFFT--YGSLLKGLCKGGHLREAEKFLK 602



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 164/369 (44%), Gaps = 20/369 (5%)

Query: 81  FIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCV---VSVKMMKVIFN 137
           F++ AL ++YR  +   +    + R+     +I D +E ++  G      SV     I  
Sbjct: 107 FVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILG 166

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
              K+         L++M +  + PD   +N +I + C +G    +  LM+ M      P
Sbjct: 167 SVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAP 226

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            I+TY +++  +C  GR + A  L   MK  G  A++  Y+ L+  +CR   + +   LL
Sbjct: 227 TIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLL 286

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M K      PN VTY ++I  F  +G +  A  +L+ M + G +PN VT + LI G  
Sbjct: 287 RDMRKRM--IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHI 344

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            EGN  EA ++   + A G   S   Y  L+  L +      A   + +M  +GV    +
Sbjct: 345 SEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRI 404

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKL 435
             + MI  LC  G + E   L  ++ K G    +D DI  +S L+ G C         K+
Sbjct: 405 TYTGMIDGLCKNGFLDEAVVLLNEMSKDG----IDPDIVTYSALINGFC---------KV 451

Query: 436 ARFMLKKRI 444
            RF   K I
Sbjct: 452 GRFKTAKEI 460



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 136/282 (48%), Gaps = 3/282 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CV  +    +I  LC+   L +EA+ +L +M +  + PD + Y+ +I  FC+ G    A 
Sbjct: 400 CVGRITYTGMIDGLCKNGFL-DEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAK 458

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           E++  +  + L P+ I Y ++I   C  G L++A  +++ M   G   +   ++ L+  +
Sbjct: 459 EIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSL 518

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G +  A E +  M  +G    PN V++  +I  +   G   +A  + D M  +G  P
Sbjct: 519 CKAGKVAEAEEFMRCMTSDG--ILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHP 576

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T  +L+KG C  G+L EA + +  + A  +      Y++L+  + ++  L +A  LF
Sbjct: 577 TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 636

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            +M+   + PD    + +I  LC  G+ +      ++ E  G
Sbjct: 637 GEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG 678



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 157/358 (43%), Gaps = 48/358 (13%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMW 150
           +S+ +YN  C M  +K+     I + EA   EG         V + +LC+  ++A EA  
Sbjct: 476 YSTLIYN-CCRMGCLKE----AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVA-EAEE 529

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
            +R M    + P+T+ ++ +I  +   G+ + A  +   M  +  +P   TY S++KG C
Sbjct: 530 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 589

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM---------- 260
             G L +A    K +     A + V Y+ LL  +C+ G++ +A+ L GEM          
Sbjct: 590 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 649

Query: 261 -----------------------EKEG-GDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
                                  E E  G+  PN V YT  +      G  K  +   ++
Sbjct: 650 TYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ 709

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M+ LG  P+ VT + +I G+   G +++   L+ ++       +   Y+ L+    + K 
Sbjct: 710 MDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKD 769

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELC------LGGQVLEGF-CLYEDIEKIGF 407
           +  +  L+  ++ +G+ PD L C  ++  +C      +G ++L+ F C   ++++  F
Sbjct: 770 VSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTF 827



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 138/307 (44%), Gaps = 7/307 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   L  EA   L+ +       DT++YN ++   C+ G++  A  L   M    + P
Sbjct: 588 LCKGGHL-REAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILP 646

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALEL 256
           D  TY S+I G C  G+   A    K  +  G    N V Y+  +DG+ + G  +  +  
Sbjct: 647 DSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYF 706

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             +M+  G   +P++VT  ++I  +   G +++   +L  M      PN  T + L+ G+
Sbjct: 707 REQMDNLGH--TPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGY 764

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
               ++  ++ L   ++  G +       SLV+ +  +  L+   K+    +  GV+ D 
Sbjct: 765 SKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDR 824

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
              +++I + C  G++   F L + +  +G   S+D D    ++  L R NH  + +++ 
Sbjct: 825 YTFNMLISKCCANGEINWAFDLVKVMTSLGI--SLDKDTCDAMVSVLNR-NHRFQESRMV 881

Query: 437 RFMLKKR 443
              + K+
Sbjct: 882 LHEMSKQ 888



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)

Query: 162  PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
            PD +  ++++   CE   +    +++K      +  D  T+  +I   C  G +  A  L
Sbjct: 787  PDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDL 846

Query: 222  FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
             KVM   G + +     A++  + R    + +  +L EM K+G   SP    Y  +I   
Sbjct: 847  VKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQG--ISPESRKYIGLINGL 904

Query: 282  CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
            C  G +K A  + + M A    P  V  S +++     G  DEA  L+  ++    V + 
Sbjct: 905  CRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTI 964

Query: 342  GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
              +++L+    +   + EA +L   M   G+K D ++ +V+I  LC  G +   F LYE+
Sbjct: 965  ASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEE 1024

Query: 402  IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            ++  GFL+  ++  +  L+ GL  +  +   A +
Sbjct: 1025 MKGDGFLA--NATTYKALIRGLLARETAFSGADI 1056



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 52/100 (52%)

Query: 145  ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            A+EA  +LR M +  L P    +  ++ L C+ G++I A EL   M    L  D+++Y  
Sbjct: 945  ADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNV 1004

Query: 205  MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            +I G C  G +  A  L++ MK  G  AN   Y AL+ G+
Sbjct: 1005 LITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGL 1044



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 3/152 (1%)

Query: 128  SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            S K + +I  LC    +   A  V  +M    + P  +  + ++R   + G    A  L+
Sbjct: 894  SRKYIGLINGLCRVGDIKT-AFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLL 952

Query: 188  KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
            + M  + L P I ++ +++   C  G + +A  L  VM   G   +LV+Y+ L+ G+C  
Sbjct: 953  RFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAK 1012

Query: 248  GSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            G M  A EL  EM+ +G     N  TY ++I+
Sbjct: 1013 GDMALAFELYEEMKGDG--FLANATTYKALIR 1042


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 141/264 (53%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   ++++A  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +G   
Sbjct: 215 GLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQG--F 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+ +TY ++I   C KG + +A  + D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    ++++ E C
Sbjct: 333 YRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G +  V
Sbjct: 393 KNGDVKMGSKLLKEMQRDGHVPCV 416



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++ +   +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLD----RGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           +L + AM + ++M      PD I YN +I   C+KGD+  A +L   M +  L PD ITY
Sbjct: 256 KL-DLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + V+Y+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P+  TYT V+  FC  G +K    +L  M+  G  P  +T
Sbjct: 375 VG--LKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVPCVIT 418



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 4/221 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A    G    V    V+ N LC+++++ +EA  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMHASGVQPDVYTYSVLINGLCKESKM-DEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M      PD ITY ++I G C  G L  A  L   M   G   + + Y
Sbjct: 255 GKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M KE  +   + V+YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGSCKEGDLETAFEYRKRMIKE--NIRLDDVSYTALISGLCKEGRSVDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
            ++G  P+  T + ++  FC  G++    +L+ ++   G V
Sbjct: 373 LSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHV 413



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
           A+L  ++ L+D  C+ G +  A  +   + K G    P+VV++ +++  +   G + E  
Sbjct: 134 ASLYFFNILMDRFCKEGEIRLAQSVFDGITKWG--LRPSVVSFNTLMNGYIKLGDLDEGF 191

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +   M A G  P+  T S LI G C E  +DEA++L D+++  G V +G  +++L+   
Sbjct: 192 RLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGH 251

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +  +L  A +++ +ML+ G  PD +  + +I  LC  G + +   L +++   G     
Sbjct: 252 CKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGL--KP 309

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           D   ++ L+ G C++     A +  + M+K+ I L       ++  L K G
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEG 360



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   F++ + +           +L+ + +L    +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDC--SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               KE  +C    ++  +  ++  FC +G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 121 WSFYKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   + A G       YS L+  L +  ++ EA KLF +ML  G+ P+
Sbjct: 181 YIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G++     +Y+ +   GF  S D   ++ L+ GLC+K    +A  L
Sbjct: 241 GVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGF--SPDXITYNTLIYGLCKKGDLXQAKDL 298


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 158/317 (49%), Gaps = 8/317 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRK 154
           M N  C+  R+         V    ++ G  V++ +   + N LC+  R+  E   VL++
Sbjct: 330 MINGYCQRGRMDD----ATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRM-EEVQKVLQE 384

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M +  +RPD   YN +I  +C +G M  A E+ + M    L    +TY +++KGFC+   
Sbjct: 385 MEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHA 444

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           ++DA  L+ +M + G A N ++ S LLDG+ + G  E+AL L  E    G   + NV+T+
Sbjct: 445 IDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARG--LAKNVITF 502

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            +VI   C  G M EA  +LDRM+ L C P+ +T  TL  G+C  G L  A  L++K+  
Sbjct: 503 NTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEH 562

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G   S   ++S +      K+  +   + S+M A G+ P+ +    +I   C  G + E
Sbjct: 563 LGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHE 622

Query: 395 GFCLYEDIEKIGFLSSV 411
              LY ++   G   +V
Sbjct: 623 ACNLYFEMVNNGMNPNV 639



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 149/299 (49%), Gaps = 5/299 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEF-DLRPDTIIYNNVIRL 173
           ++E+ + +G   +V    ++    C+  R+  EA  V+++M E  D+  D + Y  +I  
Sbjct: 275 ILESLQRKGLSPNVVTYTLLVKGYCKDGRM-EEAERVVKEMKETGDIVVDEVAYGMMING 333

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C++G M  A  +   M    ++ ++  Y +MI G C  GR+E+   + + M+  G   +
Sbjct: 334 YCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPD 393

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
             +Y+ L+DG CR GSM +A E+   M + G   +   +TY ++++ FC    + +AL +
Sbjct: 394 KYSYNTLIDGYCREGSMRKAFEMCRMMVRNG--LAATTLTYNTLLKGFCSLHAIDDALRL 451

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M   G APN ++ STL+ G    G  ++A  L  + +A G   +   +++++  L +
Sbjct: 452 WFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCK 511

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
             R+ EAE+L  +M      PD L    +    C  GQ+     L   +E +GF  SV+
Sbjct: 512 IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVE 570



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 169/367 (46%), Gaps = 36/367 (9%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           S  ++V +   + GC  S++    + N   ++     A  V  +M    + PD      +
Sbjct: 165 SSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIM 224

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
            + +C  G +  A E ++ M  + L  +++ Y +++  +C  G  EDA  + + ++R G 
Sbjct: 225 AKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGL 284

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEG--------------GDCSP------- 269
           + N+V Y+ L+ G C+ G ME A  ++ EM++ G              G C         
Sbjct: 285 SPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDAT 344

Query: 270 -------------NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
                        N+  Y ++I   C  G M+E   +L  ME +G  P++ + +TLI G+
Sbjct: 345 RVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGY 404

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C EG++ +A+++   +V  G  ++   Y++L+        + +A +L+  ML  GV P+ 
Sbjct: 405 CREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNE 464

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           ++CS ++  L   G+  +   L+++    G   +V +   + ++ GLC+     EA +L 
Sbjct: 465 ISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVIT--FNTVINGLCKIGRMAEAEELL 522

Query: 437 RFMLKKR 443
             M + R
Sbjct: 523 DRMKELR 529



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 149/335 (44%), Gaps = 62/335 (18%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC+  R+A EA  +L +M E    PD++ Y  +   +C+ G +  A  LM  M  +
Sbjct: 505 VINGLCKIGRMA-EAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHL 563

Query: 194 D-----------------------------------LYPDIITYVSMIKGFCNAGRLEDA 218
                                               L P+++TY ++I G+C  G L +A
Sbjct: 564 GFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEA 623

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG----------------EMEK 262
           C L+  M  +G   N+   SAL+    + G ++ A  +L                 E++K
Sbjct: 624 CNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDK 683

Query: 263 ---------EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
                    +G   S NV+ +  +I   C  G + +A  + + +      P+  T S+LI
Sbjct: 684 ISHVVDTIADGNPHSANVM-WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLI 742

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G    G++DEA+ L D +++ G   +   Y+SL+  L ++ +L  A  LF+K+ + G+ 
Sbjct: 743 HGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGIS 802

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
           P+G+  + +I E C  G+  E F L + + + G++
Sbjct: 803 PNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYM 837



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/419 (20%), Positives = 185/419 (44%), Gaps = 56/419 (13%)

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF---- 158
           + R++ +P   + +         +VS   +    ++  +AR  ++A  +L  +P      
Sbjct: 77  LRRVRLDPDAALHLFRLAPSRPSLVSHAQL---LHILARARRFHDARALLSSLPPHAEPL 133

Query: 159 ---------DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
                    D     + ++ ++R   + G + +A  +  GMG +   P + +   ++   
Sbjct: 134 FPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKL 193

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
             +G    A  ++  M+  G   +    + +    CR G + +A+E + EME  G +   
Sbjct: 194 VQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEV-- 251

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           N+V Y +V+  +CG G  ++A  IL+ ++  G +PN VT + L+KG+C +G ++EA +++
Sbjct: 252 NLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVV 311

Query: 330 DKV----------VAGGSVSSGGC--------------------------YSSLVVELVR 353
            ++          VA G + +G C                          Y++++  L +
Sbjct: 312 KEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCK 371

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             R++E +K+  +M   G++PD  + + +I   C  G + + F +   + + G  ++  +
Sbjct: 372 LGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLT 431

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
             ++ LL G C  +   +A +L   MLK+ +         +++ L K+G  E   NL K
Sbjct: 432 --YNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWK 488



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 134/283 (47%), Gaps = 45/283 (15%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C++  L +EA  +  +M    + P+  I + ++  F ++G +  A+ +++ +  I
Sbjct: 610 LIAGWCKEGNL-HEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNI 668

Query: 194 DLYP---------DIITYVS-----------------MIKGFCNAGRLEDACGLFKVMKR 227
           D+ P         D I++V                  +I G C +GR+ DA  LF+ ++ 
Sbjct: 669 DMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRN 728

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
                +   YS+L+ G    GS++ A  L   M   G   +PN++TY S+I   C  G +
Sbjct: 729 KRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAG--LTPNIITYNSLIYGLCKSGKL 786

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGN----------------LDEAYQLIDK 331
             A+ + +++++ G +PN +T +TLI  +C EG                 ++EA +L+D+
Sbjct: 787 SRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQ 846

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           ++      +   Y +L+   +++  ++E  KL+ +M   G+ P
Sbjct: 847 MIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 889


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 179/380 (47%), Gaps = 41/380 (10%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           S + +  C+ S  +Q   +++D + A   +GC   +    V+ N +C +  + +EA+ +L
Sbjct: 201 SILLDATCKASGYRQ-AMVLLDEMRA---KGCEPDIVTYNVLINAMCNEGDV-DEALNIL 255

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
             +P    +PD + Y  V++  C        +EL   M      PD +T+ +++   C  
Sbjct: 256 SDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQ 315

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-------- 264
           G ++ A  +   M  HGC  ++V YS++LDG+C +G ++ A+ELL  ++  G        
Sbjct: 316 GLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 375

Query: 265 -------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
                                     DC P+ VT+ +VI   C KG++  A+ ++++M  
Sbjct: 376 TTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSE 435

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            GC P+ VT +++I G C E  +D+A +L+  + + G       +++L+  L    R ++
Sbjct: 436 NGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWED 495

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           AE+L   M+ S   PD    + +I  LC  G +L+     + + + G +   +   ++++
Sbjct: 496 AEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIP--NQSTYNIV 553

Query: 420 LLGLCRKNHSVEAAKLARFM 439
           +  L +   + EA KL   M
Sbjct: 554 VDALLKAGKTQEALKLLSGM 573



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 166/323 (51%), Gaps = 8/323 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I VV+   E GC+  +     I + LC+  R+ ++A+ +L ++  +  +PDTI Y  V++
Sbjct: 322 IKVVDHMSEHGCIPDIVTYSSILDGLCDVGRV-DDAVELLSRLKSYGCKPDTIAYTTVLK 380

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C       A+ELM  M   D  PD +T+ ++I   C  G ++ A  + + M  +GC  
Sbjct: 381 GLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNP 440

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++V Y++++DG+C    ++ A+ELL  ++  G  C P++VT+ ++++  C     ++A  
Sbjct: 441 DIVTYNSIIDGLCNERCIDDAMELLSNLQSYG--CKPDIVTFNTLLKGLCSVDRWEDAEQ 498

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           ++  M    C P+  T +T+I   C +G L +A + +  +   G + +   Y+ +V  L+
Sbjct: 499 LMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALL 558

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  + +EA KL S M  +   PD +  + +I  +   G++ E   L   +   G   S D
Sbjct: 559 KAGKTQEALKLLSGM--TNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGL--SPD 614

Query: 413 SDIHSVLLLGLCRKNHSVEAAKL 435
           +  +  L  G+CR++ +  A ++
Sbjct: 615 TITYRSLAYGICREDGTDRAIRM 637



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 181/377 (48%), Gaps = 12/377 (3%)

Query: 90  YRHSSFMYN---RA-CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           +   +F +N   RA C   R+    ++  D++      GC  SV    ++ +   KA   
Sbjct: 158 FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLH----RGCSPSVVTYSILLDATCKASGY 213

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            +AM +L +M      PD + YN +I   C +GD+  A  ++  +      PD +TY  +
Sbjct: 214 RQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPV 273

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +K  C + R ++   LF  M  + CA + V ++ ++  +C+ G ++RA++++  M + G 
Sbjct: 274 LKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHG- 332

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C P++VTY+S++   C  G + +A+ +L R+++ GC P+ +  +T++KG C     + A
Sbjct: 333 -CIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHA 391

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L+ ++V          +++++  L +   +  A K+  +M  +G  PD +  + +I  
Sbjct: 392 EELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDG 451

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           LC    + +   L  +++  G    + +   + LL GLC  +   +A +L   M+     
Sbjct: 452 LCNERCIDDAMELLSNLQSYGCKPDIVT--FNTLLKGLCSVDRWEDAEQLMVNMMHSDCP 509

Query: 446 LQGPYVDKIVEHLKKSG 462
                 + ++  L + G
Sbjct: 510 PDATTFNTVITSLCQKG 526



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 133/289 (46%), Gaps = 44/289 (15%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   R+A+      R           + YN ++  +C  G +  A  L+ GM   
Sbjct: 104 LIKRLCSGGRVADAE----RVFATLGASATVVTYNTMVNGYCRAGRIEDARRLISGMP-- 157

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  T+  +I+  C  GR+ DA  +F  M   GC+ ++V YS LLD  C+     +A
Sbjct: 158 -FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQA 216

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG------------ 301
           + LL EM  +G  C P++VTY  +I   C +G + EAL IL  + + G            
Sbjct: 217 MVLLDEMRAKG--CEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVL 274

Query: 302 -----------------------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                                  CAP+ VT +T++   C +G +D A +++D +   G +
Sbjct: 275 KSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCI 334

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
                YSS++  L    R+ +A +L S++ + G KPD +A + +++ LC
Sbjct: 335 PDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLC 383



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 137/268 (51%), Gaps = 10/268 (3%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N +I+  C  G +  A+ +   +G       ++TY +M+ G+C AGR+EDA  L   M  
Sbjct: 102 NILIKRLCSGGRVADAERVFATLGA---SATVVTYNTMVNGYCRAGRIEDARRLISGMPF 158

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
                +   ++ L+  +C  G +  AL +  +M   G  CSP+VVTY+ ++   C     
Sbjct: 159 ---PPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRG--CSPSVVTYSILLDATCKASGY 213

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           ++A+ +LD M A GC P+ VT + LI   C EG++DEA  ++  + + G       Y+ +
Sbjct: 214 RQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPV 273

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  L  ++R KE E+LF++M ++   PD +  + ++  LC  G V     + + + + G 
Sbjct: 274 LKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGC 333

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +  + +  +S +L GLC      +A +L
Sbjct: 334 IPDIVT--YSSILDGLCDVGRVDDAVEL 359



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 128/263 (48%), Gaps = 6/263 (2%)

Query: 114 IDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I VVE   E GC    V    +I  LC + R  ++AM +L  +  +  +PD + +N +++
Sbjct: 427 IKVVEQMSENGCNPDIVTYNSIIDGLCNE-RCIDDAMELLSNLQSYGCKPDIVTFNTLLK 485

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C       A++LM  M   D  PD  T+ ++I   C  G L  A    K+M  +GC  
Sbjct: 486 GLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIP 545

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y+ ++D + + G  + AL+LL  M       +P+++TY +VI      G M+EAL 
Sbjct: 546 NQSTYNIVVDALLKAGKTQEALKLLSGMTNG----TPDLITYNTVISNITKAGKMEEALD 601

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L  M + G +P+ +T  +L  G C E   D A +++ ++   G       Y+ +++   
Sbjct: 602 LLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFC 661

Query: 353 RTKRLKEAEKLFSKMLASGVKPD 375
           +  R   A   F+ M++SG  PD
Sbjct: 662 QNWRTDIAIDCFAHMVSSGCMPD 684


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 148/275 (53%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+ G C+ G ++ A+E+   M  +    
Sbjct: 221 GLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P++ T +TLI G C EG+LD A++
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFK 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++ G        Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 339 HRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G  L +++++ G + SV +  ++VL+ G
Sbjct: 399 KKGDVWKGSKLLKEMQRNGHVPSVVT--YNVLMNG 431



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 111/215 (51%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M    L P+ + +  +I   C+ G +  A E+ K M   
Sbjct: 218 LINGLCKESKM-DDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQ 276

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L+ A  L   M   G   +   Y+ L+DG C+ G ++ A
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 336

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +    M +  G+   + V YT++I   C +G   +A  +L  M ++G  P+  T + +I
Sbjct: 337 FKHRKRMIQ--GNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMII 394

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G V S   Y+ L+
Sbjct: 395 NEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLM 429



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 114/240 (47%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    R  +L+
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKL----RYFKLV 126

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 127 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 186

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   ++A G       YS L+  L +  ++ +A +LF +ML  G+ P+
Sbjct: 187 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPN 246

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 247 GVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLP--DLITYNTLIYGLCKKGDLKQAHXL 304



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC++ R + +A  +LR+M    L+PD   Y  +I  FC+KGD+    +L+K
Sbjct: 353 VAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLK 411

Query: 189 GMGLIDLYPDIITYVSMIKG 208
            M      P ++TY  ++ G
Sbjct: 412 EMQRNGHVPSVVTYNVLMNG 431


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 175/386 (45%), Gaps = 41/386 (10%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMP-EFDLRPDTIIYNNVI 171
           + V++     GC + V    ++ N +C++    +EA+ +LR +P  F   PD + YN V+
Sbjct: 173 VRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVL 232

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           +  C         +LM+ M  +   P+++T+ ++I   C  G  E    +   M  HGC 
Sbjct: 233 KGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCT 292

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEG--------------------------- 264
            ++  Y+ +LDG+C+ G +E A E+L  M   G                           
Sbjct: 293 PDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEEL 352

Query: 265 ------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
                  DC  + VT+  ++  FC  G++   + +L++M   GC P+ +T +T+I GFC 
Sbjct: 353 LAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCK 412

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           EG +DEA  L+  + A G   +   Y+ ++  L   +R  +AE L S+M+  G  P+ + 
Sbjct: 413 EGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVT 472

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLA 436
            + +I  LC  G V +   L + +     L+    D+  +S ++ GL +   + EA +L 
Sbjct: 473 FNTVINFLCKKGLVEQAIELLKQM----LLNGCSPDLISYSTVIDGLGKAGKTDEALELL 528

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSG 462
             M+ K +         I   L K G
Sbjct: 529 NVMVNKGMSPNTIIYSSIASALSKEG 554



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 170/354 (48%), Gaps = 49/354 (13%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           + GC   ++M   + + +C++  L   A  +L +MP + L+P+ + YN V++  C     
Sbjct: 288 DHGCTPDIRMYATVLDGVCKEGHL-EVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERW 346

Query: 181 IAADELMKGMG-------------LIDLY----------------------PDIITYVSM 205
             A+EL+  M              L+D +                      PD+ITY ++
Sbjct: 347 EQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTV 406

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GFC  G +++A  L K M   GC  N ++Y+ +L G+C       A +L+ +M ++G 
Sbjct: 407 INGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQG- 465

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            CSPN VT+ +VI   C KG++++A+ +L +M   GC+P+ ++ ST+I G    G  DEA
Sbjct: 466 -CSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEA 524

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L++ +V  G   +   YSS+   L +  R+    ++F  +    ++ D +  + +I  
Sbjct: 525 LELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISS 584

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSV----DSDIHSVLLLGLCRKNHSVEAAKL 435
           LC  G           IE + ++ S     +   +++L+ GL  +    EA ++
Sbjct: 585 LCKRGGTDRA------IEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEM 632



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 133/259 (51%), Gaps = 2/259 (0%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +I+++E   E GCV  V     + N   K  L +EA+ +L+ M     RP+TI Y  V++
Sbjct: 384 VIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLK 443

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C     + A++LM  M      P+ +T+ ++I   C  G +E A  L K M  +GC+ 
Sbjct: 444 GLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSP 503

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L++YS ++DG+ + G  + ALELL  M  +G   SPN + Y+S+      +G +   + 
Sbjct: 504 DLISYSTVIDGLGKAGKTDEALELLNVMVNKG--MSPNTIIYSSIASALSKEGRINRVIQ 561

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D ++ +    + V  + +I   C  G  D A + +  +V+ G + +   Y+ L+  L 
Sbjct: 562 MFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLA 621

Query: 353 RTKRLKEAEKLFSKMLASG 371
               +KEA+++ +++ + G
Sbjct: 622 SEGFVKEAQEMLTELCSKG 640



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 144/347 (41%), Gaps = 80/347 (23%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN ++  +C  G + +A  L      + + P+  TY  +++  C  GR+ DA  +   M+
Sbjct: 86  YNAMVSGYCRAGQLASARRLAAS---VPVPPNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 227 RHGCAANLVAYSALLDGIC---------------------------------------RL 247
           R GCA     Y  +L+  C                                       + 
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQG 202

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           GS++ AL LL ++    G C P+VV+Y +V++  C          +++ M  +GC PN V
Sbjct: 203 GSVDEALRLLRDLPTSFG-CDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVV 261

Query: 308 TISTLI-----------------------------------KGFCVEGNLDEAYQLIDKV 332
           T +TLI                                    G C EG+L+ A++++D++
Sbjct: 262 TFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRM 321

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            + G   +  CY++++  L   +R ++AE+L ++M  +    D +  ++++   C  G V
Sbjct: 322 PSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLV 381

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
                L E + + G +  V +  ++ ++ G C++    EA  L + M
Sbjct: 382 YRVIELLEQMLEHGCVPDVIT--YTTVINGFCKEGLIDEAVMLLKSM 426


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 159/317 (50%), Gaps = 15/317 (4%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKM------PEFDLRPDTIIYNNVIRLFCEKG--- 178
           SV    ++ N   KAR  +EA+ V  ++          + PD +++N +I   C+ G   
Sbjct: 315 SVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEE 374

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
           D ++  E MK MG I+  P+ +TY  +I GF  AG  + A  LF+ M   G   N++  +
Sbjct: 375 DGLSLLEEMK-MGNIN-RPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLN 432

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            L+DG+C+ G + RA+E   EM+ +G     N  TYT++I  FCG   +  A+   + M 
Sbjct: 433 TLVDGLCKHGRVHRAVEFFNEMKGKG--LKGNAATYTALISAFCGVNNINRAMQCFEEML 490

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           + GC+P+ V   +LI G C+ G +++A  ++ K+   G      CY+ L+    + K+L+
Sbjct: 491 SSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLE 550

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
              +L ++M  +GVKPD +  + +I  L   G       + E + K G   SV +  +  
Sbjct: 551 RVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVT--YGA 608

Query: 419 LLLGLCRKNHSVEAAKL 435
           ++   C K +  E  K+
Sbjct: 609 IIHAYCSKKNVDEGMKI 625



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 173/357 (48%), Gaps = 16/357 (4%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCV--VSVKMMKVIFN-----LCEKARLANEA 148
           + N  C+  RI +     + V +  + +G    V V+   V+FN     LC+  +   + 
Sbjct: 322 LVNHLCKARRIDE----ALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGK-EEDG 376

Query: 149 MWVLRKMPEFDL-RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           + +L +M   ++ RP+T+ YN +I  F + G+   A EL + M    + P++IT  +++ 
Sbjct: 377 LSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVD 436

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  GR+  A   F  MK  G   N   Y+AL+   C + ++ RA++   EM   G  C
Sbjct: 437 GLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSG--C 494

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+ V Y S+I   C  G M +A  ++ +++  G + +R   + LI GFC +  L+  Y+
Sbjct: 495 SPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYE 554

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ ++   G       Y++L+  L +T     A K+  KM+  G++P  +    +I   C
Sbjct: 555 LLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYC 614

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
               V EG  ++ ++     +   ++ I+++L+  LCR N    A  L   M  KR+
Sbjct: 615 SKKNVDEGMKIFGEMCSTSKVPP-NTVIYNILIDALCRNNDVDRAISLMEDMKVKRV 670



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 132/306 (43%), Gaps = 36/306 (11%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           EEG   +V  +  + + LC+  R+ + A+    +M    L+ +   Y  +I  FC   ++
Sbjct: 421 EEGVQPNVITLNTLVDGLCKHGRV-HRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNI 479

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A +  + M      PD + Y S+I G C AGR+ DA  +   +K  G + +   Y+ L
Sbjct: 480 NRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVL 539

Query: 241 LDGICRLGSMERALELLGEMEKEG------------------GDCS-------------- 268
           + G C+   +ER  ELL EME+ G                  GD +              
Sbjct: 540 ISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGL 599

Query: 269 -PNVVTYTSVIQIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            P+VVTY ++I  +C K  + E + I   M       PN V  + LI   C   ++D A 
Sbjct: 600 RPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAI 659

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L++ +       +   Y++++  +   K L +A +L  +M+    +PD +   V+   L
Sbjct: 660 SLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWL 719

Query: 387 CLGGQV 392
              G++
Sbjct: 720 SAVGEI 725



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 102/198 (51%), Gaps = 4/198 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+K +L      +L +M E  ++PDTI YN +I    + GD   A ++M+ M   
Sbjct: 539 LISGFCKKKKL-ERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKE 597

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVM-KRHGCAANLVAYSALLDGICRLGSMER 252
            L P ++TY ++I  +C+   +++   +F  M        N V Y+ L+D +CR   ++R
Sbjct: 598 GLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDR 657

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+ L+ +M+ +     PN  TY ++++    K M+ +A  ++DRM    C P+ +T+  L
Sbjct: 658 AISLMEDMKVK--RVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVL 715

Query: 313 IKGFCVEGNLDEAYQLID 330
            +     G +++    ++
Sbjct: 716 TEWLSAVGEIEKLKHFVE 733



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 128/295 (43%), Gaps = 12/295 (4%)

Query: 40  QKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNR 99
           Q N   ++  + T+   +D  C    +HR     ++M  +     A   +   S+F    
Sbjct: 418 QMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAF---- 473

Query: 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
            C ++ I +     +   E     GC   +V    +I  LC   R+ N+A  V+ K+   
Sbjct: 474 -CGVNNINR----AMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRM-NDASVVVSKLKLA 527

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
               D   YN +I  FC+K  +    EL+  M    + PD ITY ++I      G    A
Sbjct: 528 GFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATA 587

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             + + M + G   ++V Y A++   C   +++  +++ GEM        PN V Y  +I
Sbjct: 588 SKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEM-CSTSKVPPNTVIYNILI 646

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
              C    +  A+ +++ M+     PN  T + ++KG   +  L +A++L+D++V
Sbjct: 647 DALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMV 701



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 143/313 (45%), Gaps = 21/313 (6%)

Query: 141 KARLANEAMWVLRKMPE----FDLRPDTIIYNNVIR--LFCEKGDMIAADELMKGMGLID 194
           K+  A +A+ VL +MP+    F +  + I++  ++R       G+++    L+  +G   
Sbjct: 186 KSGRAGDALHVLDEMPQANSGFSVTGE-IVFGELVRSGRSFPDGEVVG---LVAKLGERG 241

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           ++PD      ++   C   +   A  +   + R G A +  + +ALL  + R   ++R  
Sbjct: 242 VFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMN 301

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA------LGCAPNRVT 308
           ELL EMEK      P+VVT+  ++   C    + EAL + DR+        +G  P+ V 
Sbjct: 302 ELLAEMEKR--KIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVL 359

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            +TLI G C  G  ++   L++++  G  +  +   Y+ L+    +      A +LF +M
Sbjct: 360 FNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQM 419

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              GV+P+ +  + ++  LC  G+V      + +++  G     ++  ++ L+   C  N
Sbjct: 420 NEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKG--NAATYTALISAFCGVN 477

Query: 428 HSVEAAKLARFML 440
           +   A +    ML
Sbjct: 478 NINRAMQCFEEML 490



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 1/138 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLF 174
           V+E   +EG   SV     I +     +  +E M +  +M     + P+T+IYN +I   
Sbjct: 590 VMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDAL 649

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C   D+  A  LM+ M +  + P+  TY +++KG  +   L  A  L   M    C  + 
Sbjct: 650 CRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDY 709

Query: 235 VAYSALLDGICRLGSMER 252
           +    L + +  +G +E+
Sbjct: 710 ITMEVLTEWLSAVGEIEK 727


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 158/317 (49%), Gaps = 8/317 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRK 154
           M N  C+  R+         V    ++ G  V++ +   + N LC+  R+  E   VL++
Sbjct: 330 MINGYCQRGRMDD----ATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRM-EEVQKVLQE 384

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M +  +RPD   YN +I  +C +G M  A E+ + M    L    +TY +++KGFC+   
Sbjct: 385 MEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHA 444

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           ++DA  L+ +M + G A N ++ S LLDG+ + G  E+AL L  E    G   + NV+T+
Sbjct: 445 IDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARG--LAKNVITF 502

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            +VI   C  G M EA  +LDRM+ L C P+ +T  TL  G+C  G L  A  L++K+  
Sbjct: 503 NTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEH 562

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G   S   ++S +      K+  +   + S+M A G+ P+ +    +I   C  G + E
Sbjct: 563 LGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHE 622

Query: 395 GFCLYEDIEKIGFLSSV 411
              LY ++   G   +V
Sbjct: 623 ACNLYFEMVNNGMNPNV 639



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 149/299 (49%), Gaps = 5/299 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEF-DLRPDTIIYNNVIRL 173
           ++E+ + +G   +V    ++    C+  R+  EA  V+++M E  D+  D + Y  +I  
Sbjct: 275 ILESLQRKGLSPNVVTYTLLVKGYCKDGRM-EEAERVVKEMKETGDIVVDEVAYGMMING 333

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C++G M  A  +   M    ++ ++  Y +MI G C  GR+E+   + + M+  G   +
Sbjct: 334 YCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPD 393

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
             +Y+ L+DG CR GSM +A E+   M + G   +   +TY ++++ FC    + +AL +
Sbjct: 394 KYSYNTLIDGYCREGSMRKAFEMCRMMVRNG--LAATTLTYNTLLKGFCSLHAIDDALRL 451

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M   G APN ++ STL+ G    G  ++A  L  + +A G   +   +++++  L +
Sbjct: 452 WFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCK 511

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
             R+ EAE+L  +M      PD L    +    C  GQ+     L   +E +GF  SV+
Sbjct: 512 IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVE 570



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 178/397 (44%), Gaps = 64/397 (16%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC+  R+A EA  +L +M E    PD++ Y  +   +C+ G +  A  LM  M  +
Sbjct: 505 VINGLCKIGRMA-EAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHL 563

Query: 194 D-----------------------------------LYPDIITYVSMIKGFCNAGRLEDA 218
                                               L P+++TY ++I G+C  G L +A
Sbjct: 564 GFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEA 623

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG----------------EMEK 262
           C L+  M  +G   N+   SAL+    + G ++ A  +L                 E++K
Sbjct: 624 CNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDK 683

Query: 263 ---------EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
                    +G   S NV+ +  +I   C  G + +A  + + +      P+  T S+LI
Sbjct: 684 ISHVVDTIADGNPHSANVM-WNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLI 742

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G    G++DEA+ L D +++ G   +   Y+SL+  L ++ +L  A  LF+K+ + G+ 
Sbjct: 743 HGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGIS 802

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+G+  + +I E C  G+  E F L + + + G   +V +  +S+L+ GLC + +  EA 
Sbjct: 803 PNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVIT--YSILIYGLCTQGYMEEAI 860

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           KL   M++  +         ++    KSG+ E I+ L
Sbjct: 861 KLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKL 897



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 114/211 (54%), Gaps = 2/211 (0%)

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
            +++N +I   C+ G +  A  L + +      PD  TY S+I G   +G +++A  L  
Sbjct: 700 NVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRD 759

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
           VM   G   N++ Y++L+ G+C+ G + RA+ L  +++ +G   SPN +TY ++I  +C 
Sbjct: 760 VMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKG--ISPNGITYNTLIDEYCK 817

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
           +G   EA  +  +M   G  P  +T S LI G C +G ++EA +L+D+++      +   
Sbjct: 818 EGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYIT 877

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           Y +L+   +++  ++E  KL+ +M   G+ P
Sbjct: 878 YCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 908



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 169/367 (46%), Gaps = 36/367 (9%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           S  ++V +   + GC  S++    + N   ++     A  V  +M    + PD      +
Sbjct: 165 SSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIM 224

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
            + +C  G +  A E ++ M  + L  +++ Y +++  +C  G  EDA  + + ++R G 
Sbjct: 225 AKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGL 284

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEG--------------GDCSP------- 269
           + N+V Y+ L+ G C+ G ME A  ++ EM++ G              G C         
Sbjct: 285 SPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDAT 344

Query: 270 -------------NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
                        N+  Y ++I   C  G M+E   +L  ME +G  P++ + +TLI G+
Sbjct: 345 RVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGY 404

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C EG++ +A+++   +V  G  ++   Y++L+        + +A +L+  ML  GV P+ 
Sbjct: 405 CREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNE 464

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           ++CS ++  L   G+  +   L+++    G   +V +   + ++ GLC+     EA +L 
Sbjct: 465 ISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVIT--FNTVINGLCKIGRMAEAEELL 522

Query: 437 RFMLKKR 443
             M + R
Sbjct: 523 DRMKELR 529



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 146/303 (48%), Gaps = 29/303 (9%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C++  L +EA  +  +M    + P+  I + ++  F ++G +  A+ +++ +  I
Sbjct: 610 LIAGWCKEGNL-HEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNI 668

Query: 194 DLYP---------DIITYVS-----------------MIKGFCNAGRLEDACGLFKVMKR 227
           D+ P         D I++V                  +I G C +GR+ DA  LF+ ++ 
Sbjct: 669 DMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRN 728

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
                +   YS+L+ G    GS++ A  L   M   G   +PN++TY S+I   C  G +
Sbjct: 729 KRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAG--LTPNIITYNSLIYGLCKSGKL 786

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
             A+ + +++++ G +PN +T +TLI  +C EG   EA++L  K+V  G   +   YS L
Sbjct: 787 SRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSIL 846

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  L     ++EA KL  +M+ + V P+ +    +I      G + E   LY+++   G 
Sbjct: 847 IYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGL 906

Query: 408 LSS 410
           L +
Sbjct: 907 LPT 909



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/419 (20%), Positives = 185/419 (44%), Gaps = 56/419 (13%)

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF---- 158
           + R++ +P   + +         +VS   +    ++  +AR  ++A  +L  +P      
Sbjct: 77  LRRVRLDPDAALHLFRLAPSRPSLVSHAQL---LHILARARRFHDARALLSSLPPHAEPL 133

Query: 159 ---------DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
                    D     + ++ ++R   + G + +A  +  GMG +   P + +   ++   
Sbjct: 134 FPHLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKL 193

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
             +G    A  ++  M+  G   +    + +    CR G + +A+E + EME  G +   
Sbjct: 194 VQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEV-- 251

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           N+V Y +V+  +CG G  ++A  IL+ ++  G +PN VT + L+KG+C +G ++EA +++
Sbjct: 252 NLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVV 311

Query: 330 DKV----------VAGGSVSSGGC--------------------------YSSLVVELVR 353
            ++          VA G + +G C                          Y++++  L +
Sbjct: 312 KEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCK 371

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             R++E +K+  +M   G++PD  + + +I   C  G + + F +   + + G  ++  +
Sbjct: 372 LGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLT 431

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
             ++ LL G C  +   +A +L   MLK+ +         +++ L K+G  E   NL K
Sbjct: 432 --YNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWK 488


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 168/365 (46%), Gaps = 50/365 (13%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL-------------RPDTIIYN 168
           EE     +KM K  F +  K R  N  +  L K+   DL             +     YN
Sbjct: 202 EEASECFLKMRK--FRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYN 259

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I   C++GD+  A  L   M      PDI+TY S+I G    G L++   +F+ MK  
Sbjct: 260 IMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA 319

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
            C  +++ Y+AL++  C+   M +A E L EM+  G    PNVVTY++ I  FC +GM++
Sbjct: 320 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANG--LKPNVVTYSTFIDAFCKEGMLQ 377

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           EA+     M  +   PN  T ++LI   C  GNL EA +L+++++  G   +   Y++L+
Sbjct: 378 EAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL 437

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR------------------------ 384
             L    R+KEAE++F  ML +GV P+    + ++                         
Sbjct: 438 DGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK 497

Query: 385 -ELCLGGQVLEGFCLYEDIEKIGFL------SSVDSD--IHSVLLLGLCRKNHSVEAAKL 435
            +L L G +L G C    +E+   L      S ++++  I++ L+    +   + EA  L
Sbjct: 498 PDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTL 557

Query: 436 ARFML 440
              ML
Sbjct: 558 LEEML 562



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 175/394 (44%), Gaps = 43/394 (10%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR 143
           A ++ S    + M +  C+   ++   S+   +    KE G    +     + +   K  
Sbjct: 249 AGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQM----KEAGFTPDIVTYNSLIDGHGKLG 304

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           L +E + +  +M + D  PD I YN +I  FC+   M  A E +  M    L P+++TY 
Sbjct: 305 LLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYS 364

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           + I  FC  G L++A   F  M+R     N   Y++L+D  C+ G++  AL+L+ E+ + 
Sbjct: 365 TFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQA 424

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF------- 316
           G     NVVTYT+++   C +G MKEA  +   M   G APN+ T + L+ GF       
Sbjct: 425 G--IKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEME 482

Query: 317 ----------------------------CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
                                       C E  L+EA  LI ++   G  ++   Y++L+
Sbjct: 483 YAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLM 542

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
               ++ +  EA  L  +ML  G+    +    +I  LC  G V E    +  + +IG  
Sbjct: 543 DAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQ 602

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +V   +++ L+ GLC+ N    A KL   ML K
Sbjct: 603 PNV--AVYTALVDGLCKNNCFEVAKKLFDEMLDK 634



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 181/412 (43%), Gaps = 49/412 (11%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM 103
           N ++  + T    +D+ C   +L        Q  I+FF+    + +   + F Y    + 
Sbjct: 354 NGLKPNVVTYSTFIDAFCKEGML--------QEAIKFFV-DMRRVALTPNEFTYTSLIDA 404

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRP 162
           +    N +  + +VE   + G  ++V     + + LCE+ R+  EA  V R M    + P
Sbjct: 405 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRM-KEAEEVFRAMLNAGVAP 463

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           +   Y  ++  F +  +M  A +++K M    + PD++ Y +++ G CN  RLE+A  L 
Sbjct: 464 NQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLI 523

Query: 223 KVMKRHGCAANLVAYS-----------------------------------ALLDGICRL 247
             +K  G   N V Y+                                   AL+DG+C+ 
Sbjct: 524 GEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKS 583

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ++ A+   G M + G    PNV  YT+++   C     + A  + D M   G  P+++
Sbjct: 584 GLVQEAMHHFGRMSEIG--LQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKI 641

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
             + LI G    GNL EA  L D+++  G       Y++L+  L  + ++++A  L  +M
Sbjct: 642 AYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEM 701

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV-DSDIHSV 418
           +  GV PD +    +I++    G+V E   L  ++ K G ++ + D  + SV
Sbjct: 702 IGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGLSDHAVPSV 753


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 157/312 (50%), Gaps = 20/312 (6%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
           QSS+    +M  R    ++ K    +I+ +    K E CVVS  ++  I     +     
Sbjct: 51  QSSF---GYMVLRLVSANKFKAAEDLIVRM----KIENCVVSEDILLSICRGYGRVHRPF 103

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +++ V  KM +FD  P    Y  V+ +  E+  +  A +  K M  I L P + +   +I
Sbjct: 104 DSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLI 163

Query: 207 KGFC-NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           K  C N G ++    +F  M + GC  +   Y  L+ G+CR G ++ A +L  EM ++  
Sbjct: 164 KALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEK-- 221

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           DC+P VVTYTS+I   CG   + EA+  L+ M++ G  PN  T S+L+ G C +G   +A
Sbjct: 222 DCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQA 281

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L + ++A G   +   Y++L+  L + ++++EA +L  +M   G+KPD          
Sbjct: 282 MELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDA--------- 332

Query: 386 LCLGGQVLEGFC 397
             L G+V+ GFC
Sbjct: 333 -GLYGKVISGFC 343



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 112/256 (43%), Gaps = 44/256 (17%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   R+ +EA  +  +M E D  P  + Y ++I   C   ++  A   ++ M   
Sbjct: 198 LISGLCRFGRI-DEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSK 256

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P++ TY S++ G C  GR   A  LF++M   GC  N+V Y+ L+ G+C+   ++ A
Sbjct: 257 GIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEA 316

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT----- 308
           +ELL  M  +G    P+   Y  VI  FC     +EA   LD M   G  PNR+T     
Sbjct: 317 VELLDRMNLQG--LKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHV 374

Query: 309 ------------------------------------ISTLIKGFCVEGNLDEAYQLIDKV 332
                                               + +L+K  C +G   +A QL+D++
Sbjct: 375 KTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEI 434

Query: 333 VAGGSVSSGGCYSSLV 348
           V  G + S G +  L+
Sbjct: 435 VTDGCIPSKGTWKLLI 450


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 171/337 (50%), Gaps = 20/337 (5%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F++N+A E           + +++   + GC   +     + N LC++    + A+ 
Sbjct: 191 HGLFLHNKASEA----------VALIDRMVQRGCQPDLVTYGAVVNGLCKRGD-TDLALN 239

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L KM    +  + +IY+ VI   C+      A  L   M    + P++ITY S+I   C
Sbjct: 240 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 299

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N GR  DA  L   M       NLV +SAL+D   + G + +A +L  EM K   D  PN
Sbjct: 300 NYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSID--PN 357

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY+S+I  FC    + EA  +L+ M    C PN VT +TLI GFC    +D+  +L  
Sbjct: 358 IFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFR 417

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V +   Y++L+    + +    A+ +F +M++ GV P+ L  ++++  LC  G
Sbjct: 418 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 477

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCR 425
           ++ +   ++E +++    S+++ DI++  +++ G+C+
Sbjct: 478 KLAKAMVVFEYLQR----STMEPDIYTYNIMIEGMCK 510



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 143/279 (51%), Gaps = 5/279 (1%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++ +EA K E  VV      VI +LC K R  ++A+ +  +M    +RP+ I Y+++I 
Sbjct: 240 LLNKMEAAKIEANVVIYS--TVIDSLC-KYRHEDDALNLFTEMENKGVRPNVITYSSLIS 296

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G    A  L+  M    + P+++T+ ++I  F   G+L  A  L++ M +     
Sbjct: 297 CLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDP 356

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N+  YS+L++G C L  +  A ++L  M ++  DC PNVVTY ++I  FC    + + + 
Sbjct: 357 NIFTYSSLINGFCMLDRLGEAKQMLELMIRK--DCLPNVVTYNTLINGFCKAKRVDKGME 414

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M   G   N VT +TLI GF    + D A  +  ++V+ G   +   Y+ L+  L 
Sbjct: 415 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLC 474

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +  +L +A  +F  +  S ++PD    ++MI  +C  G+
Sbjct: 475 KNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 141/289 (48%), Gaps = 4/289 (1%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           KM +    PD +  N+++  FC    +  A  L+  M  +   PD +T+ ++I G     
Sbjct: 138 KMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHN 197

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +  +A  L   M + GC  +LV Y A+++G+C+ G  + AL LL +M  E      NVV 
Sbjct: 198 KASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKM--EAAKIEANVVI 255

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y++VI   C      +AL +   ME  G  PN +T S+LI   C  G   +A +L+  ++
Sbjct: 256 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMI 315

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
                 +   +S+L+   V+  +L +AEKL+ +M+   + P+    S +I   C+  ++ 
Sbjct: 316 ERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLG 375

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           E   + E + +   L +V +  ++ L+ G C+     +  +L R M ++
Sbjct: 376 EAKQMLELMIRKDCLPNVVT--YNTLINGFCKAKRVDKGMELFREMSQR 422



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 130/258 (50%), Gaps = 10/258 (3%)

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M ++ +  ++ TY  +I  FC   RL  A  L   M + G   ++V  ++LL+G C    
Sbjct: 104 MEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNR 163

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           +  A+ L+ +M + G    P+ VT+T++I          EA+ ++DRM   GC P+ VT 
Sbjct: 164 ISDAVALVDQMVEMG--YKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTY 221

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
             ++ G C  G+ D A  L++K+ A    ++   YS+++  L + +   +A  LF++M  
Sbjct: 222 GAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 281

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYED-IEKIGFLSSVDSDI--HSVLLLGLCRK 426
            GV+P+ +  S +I  LC  G+  +   L  D IE+      ++ ++   S L+    +K
Sbjct: 282 KGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIER-----KINPNLVTFSALIDAFVKK 336

Query: 427 NHSVEAAKLARFMLKKRI 444
              V+A KL   M+K+ I
Sbjct: 337 GKLVKAEKLYEEMIKRSI 354



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 123/249 (49%), Gaps = 4/249 (1%)

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
           +P II +  ++       + +      + M+  G + NL  Y+ L++  CR   +  AL 
Sbjct: 75  FPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALA 134

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           LLG+M K G +  P++VT  S++  FC    + +A+ ++D+M  +G  P+ VT +TLI G
Sbjct: 135 LLGKMMKLGYE--PDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHG 192

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
             +     EA  LID++V  G       Y ++V  L +      A  L +KM A+ ++ +
Sbjct: 193 LFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEAN 252

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  S +I  LC      +   L+ ++E  G   +V +  +S L+  LC      +A++L
Sbjct: 253 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVIT--YSSLISCLCNYGRWSDASRL 310

Query: 436 ARFMLKKRI 444
              M++++I
Sbjct: 311 LSDMIERKI 319



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 39/256 (15%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L+DA GLF VM +     +++ +S LL  I ++   +  +    +ME  G   S N+ TY
Sbjct: 59  LDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILG--ISHNLYTY 116

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +I  FC    +  AL +L +M  LG  P+ VT+++L+ GFC  GN             
Sbjct: 117 NILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFC-HGN------------- 162

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                                R+ +A  L  +M+  G KPD +  + +I  L L  +  E
Sbjct: 163 ---------------------RISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASE 201

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
              L + + + G     D   +  ++ GLC++  +  A  L   M   +I         +
Sbjct: 202 AVALIDRMVQRG--CQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTV 259

Query: 455 VEHLKKSGDEELITNL 470
           ++ L K   E+   NL
Sbjct: 260 IDSLCKYRHEDDALNL 275


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 184/391 (47%), Gaps = 49/391 (12%)

Query: 87  QSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEK 141
           +S Y  +   YN      C+  R K      I++++  K +G    V     +I +LC  
Sbjct: 261 KSGYAPTIVTYNTVLHWYCKKGRFKA----AIELLDHMKSKGVDADVCTYNMLIHDLCRS 316

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM----------- 190
            R+A +   +LR M +  + P+ + YN +I  F  +G ++ A +L+  M           
Sbjct: 317 NRIA-KGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVT 375

Query: 191 --GLID----------------------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
              LID                      L P  ++Y  ++ G C     + A G +  MK
Sbjct: 376 FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMK 435

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           R+G     + Y+ ++DG+C+ G ++ A+ LL EM K+G D  P++VTY+++I  FC  G 
Sbjct: 436 RNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGID--PDIVTYSALINGFCKVGR 493

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
            K A  I+ R+  +G +PN +  STLI   C  G L EA ++ + ++  G       ++ 
Sbjct: 494 FKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNV 553

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           LV  L +  ++ EAE+    M + G+ P+ ++   +I      G+ L+ F +++++ K+G
Sbjct: 554 LVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVG 613

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
              +  +  +  LL GLC+  H  EA K  +
Sbjct: 614 HHPTFFT--YGSLLKGLCKGGHLREAEKFLK 642



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 164/369 (44%), Gaps = 20/369 (5%)

Query: 81  FIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCV---VSVKMMKVIFN 137
           F++ AL ++YR  +   +    + R+     +I D +E ++  G      SV     I  
Sbjct: 147 FVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILG 206

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
              K+         L++M +  + PD   +N +I + C +G    +  LM+ M      P
Sbjct: 207 SVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAP 266

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            I+TY +++  +C  GR + A  L   MK  G  A++  Y+ L+  +CR   + +   LL
Sbjct: 267 TIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLL 326

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M K      PN VTY ++I  F  +G +  A  +L+ M + G +PN VT + LI G  
Sbjct: 327 RDMRKRM--IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHI 384

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            EGN  EA ++   + A G   S   Y  L+  L +      A   + +M  +GV    +
Sbjct: 385 SEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRI 444

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKL 435
             + MI  LC  G + E   L  ++ K G    +D DI  +S L+ G C         K+
Sbjct: 445 TYTGMIDGLCKNGFLDEAVVLLNEMSKDG----IDPDIVTYSALINGFC---------KV 491

Query: 436 ARFMLKKRI 444
            RF   K I
Sbjct: 492 GRFKTAKEI 500



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 136/282 (48%), Gaps = 3/282 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CV  +    +I  LC+   L +EA+ +L +M +  + PD + Y+ +I  FC+ G    A 
Sbjct: 440 CVGRITYTGMIDGLCKNGFL-DEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAK 498

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           E++  +  + L P+ I Y ++I   C  G L++A  +++ M   G   +   ++ L+  +
Sbjct: 499 EIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSL 558

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G +  A E +  M  +G    PN V++  +I  +   G   +A  + D M  +G  P
Sbjct: 559 CKAGKVAEAEEFMRCMTSDG--ILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHP 616

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T  +L+KG C  G+L EA + +  + A  +      Y++L+  + ++  L +A  LF
Sbjct: 617 TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 676

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            +M+   + PD    + +I  LC  G+ +      ++ E  G
Sbjct: 677 GEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG 718



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 157/358 (43%), Gaps = 48/358 (13%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMW 150
           +S+ +YN  C M  +K+     I + EA   EG         V + +LC+  ++A EA  
Sbjct: 516 YSTLIYN-CCRMGCLKE----AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVA-EAEE 569

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
            +R M    + P+T+ ++ +I  +   G+ + A  +   M  +  +P   TY S++KG C
Sbjct: 570 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 629

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM---------- 260
             G L +A    K +     A + V Y+ LL  +C+ G++ +A+ L GEM          
Sbjct: 630 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 689

Query: 261 -----------------------EKEG-GDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
                                  E E  G+  PN V YT  +      G  K  +   ++
Sbjct: 690 TYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ 749

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M+ LG  P+ VT + +I G+   G +++   L+ ++       +   Y+ L+    + K 
Sbjct: 750 MDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKD 809

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELC------LGGQVLEGF-CLYEDIEKIGF 407
           +  +  L+  ++ +G+ PD L C  ++  +C      +G ++L+ F C   ++++  F
Sbjct: 810 VSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTF 867



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 138/307 (44%), Gaps = 7/307 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   L  EA   L+ +       DT++YN ++   C+ G++  A  L   M    + P
Sbjct: 628 LCKGGHL-REAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILP 686

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALEL 256
           D  TY S+I G C  G+   A    K  +  G    N V Y+  +DG+ + G  +  +  
Sbjct: 687 DSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYF 746

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             +M+  G   +P++VT  ++I  +   G +++   +L  M      PN  T + L+ G+
Sbjct: 747 REQMDNLGH--TPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGY 804

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
               ++  ++ L   ++  G +       SLV+ +  +  L+   K+    +  GV+ D 
Sbjct: 805 SKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDR 864

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
              +++I + C  G++   F L + +  +G   S+D D    ++  L R NH  + +++ 
Sbjct: 865 YTFNMLISKCCANGEINWAFDLVKVMTSLGI--SLDKDTCDAMVSVLNR-NHRFQESRMV 921

Query: 437 RFMLKKR 443
              + K+
Sbjct: 922 LHEMSKQ 928



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)

Query: 162  PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
            PD +  ++++   CE   +    +++K      +  D  T+  +I   C  G +  A  L
Sbjct: 827  PDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDL 886

Query: 222  FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
             KVM   G + +     A++  + R    + +  +L EM K+G   SP    Y  +I   
Sbjct: 887  VKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQG--ISPESRKYIGLINGL 944

Query: 282  CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
            C  G +K A  + + M A    P  V  S +++     G  DEA  L+  ++    V + 
Sbjct: 945  CRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTI 1004

Query: 342  GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
              +++L+    +   + EA +L   M   G+K D ++ +V+I  LC  G +   F LYE+
Sbjct: 1005 ASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEE 1064

Query: 402  IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            ++  GFL+  ++  +  L+ GL  +  +   A +
Sbjct: 1065 MKGDGFLA--NATTYKALIRGLLARETAFSGADI 1096



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 52/100 (52%)

Query: 145  ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            A+EA  +LR M +  L P    +  ++ L C+ G++I A EL   M    L  D+++Y  
Sbjct: 985  ADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNV 1044

Query: 205  MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            +I G C  G +  A  L++ MK  G  AN   Y AL+ G+
Sbjct: 1045 LITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGL 1084



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 3/152 (1%)

Query: 128  SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            S K + +I  LC    +   A  V  +M    + P  +  + ++R   + G    A  L+
Sbjct: 934  SRKYIGLINGLCRVGDIKT-AFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLL 992

Query: 188  KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
            + M  + L P I ++ +++   C  G + +A  L  VM   G   +LV+Y+ L+ G+C  
Sbjct: 993  RFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAK 1052

Query: 248  GSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            G M  A EL  EM+ +G     N  TY ++I+
Sbjct: 1053 GDMALAFELYEEMKGDG--FLANATTYKALIR 1082


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 174/383 (45%), Gaps = 37/383 (9%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V+E     GC + V    ++ N +C++  + ++A+ +LR +P F   PD + YN V++
Sbjct: 177 VRVLEDLHARGCALDVGNCNLVLNAICDQGSV-DKALHLLRDLPSFGCEPDVVSYNAVLK 235

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C         ELM+ M  +   P+I+T+ ++I   C  G  E    +   M  HGC  
Sbjct: 236 GLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTP 295

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG---------------------------- 264
           ++  Y+ ++DGIC+ G ++ A E+L  M   G                            
Sbjct: 296 DIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELL 355

Query: 265 -----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
                 DC  + VT+  ++  FC  G++   + +L++M   GC P+ +T +T+I GFC E
Sbjct: 356 AEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKE 415

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +DEA  L+  + A G   +   Y+ ++  L   +R  +AE L S+M+  G   + +  
Sbjct: 416 GLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITF 475

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + +I  LC  G V +   L + +   G   S D   +S ++ GL +   + EA +L   M
Sbjct: 476 NTLINFLCKKGLVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTDEALELLNVM 533

Query: 440 LKKRIWLQGPYVDKIVEHLKKSG 462
           + K +         I   L + G
Sbjct: 534 VNKGMSPNTIIYSSIASALSREG 556



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 161/315 (51%), Gaps = 4/315 (1%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           VL +M E    PD  +Y  +I   C++G +  A E++  M    L P+++ Y +++KG C
Sbjct: 284 VLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLC 343

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           +A R E+   L   M    C  + V ++ L+D  C+ G ++R +ELL +M   G  C P+
Sbjct: 344 SAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHG--CMPD 401

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           V+TYT+VI  FC +G++ EA+ +L  M A GC PN ++ + ++KG C      +A  L+ 
Sbjct: 402 VITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMS 461

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +++  G   +   +++L+  L +   +++A +L  +ML +G  PD ++ S +I  L   G
Sbjct: 462 QMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAG 521

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
           +  E   L   +   G   S ++ I+S +   L R+    +  ++   +    I      
Sbjct: 522 KTDEALELLNVMVNKGM--SPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVL 579

Query: 451 VDKIVEHLKKSGDEE 465
            + ++  L K G+ E
Sbjct: 580 YNAVISSLCKRGETE 594



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 157/347 (45%), Gaps = 4/347 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++     GC     M  VI     +      A+ VL  +       D    N V+   C
Sbjct: 144 VLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAIC 203

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G +  A  L++ +      PD+++Y +++KG C A R      L + M R  C  N+V
Sbjct: 204 DQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV 263

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L+  +CR G  ER  E+L +M + G  C+P++  Y ++I   C +G +K A  IL+
Sbjct: 264 TFNTLISYLCRNGLFERVHEVLAQMAEHG--CTPDIRMYATIIDGICKEGHLKVAHEILN 321

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           RM + G  PN V  +TL+KG C     +E  +L+ ++           ++ LV    +  
Sbjct: 322 RMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNG 381

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            +    +L  +ML  G  PD +  + +I   C  G + E   L + +   G   +  S  
Sbjct: 382 LVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTIS-- 439

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           ++++L GLC     V+A  L   M+++   L     + ++  L K G
Sbjct: 440 YTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 486



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 137/267 (51%), Gaps = 8/267 (2%)

Query: 134 VIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V FN+     C+   L +  + +L +M      PD I Y  VI  FC++G +  A  L+K
Sbjct: 368 VTFNILVDFFCQNG-LVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 426

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P+ I+Y  ++KG C+A R  DA  L   M + GC  N + ++ L++ +C+ G
Sbjct: 427 SMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 486

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E+A+ELL +M   G  CSP++++Y++VI      G   EAL +L+ M   G +PN + 
Sbjct: 487 LVEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTII 544

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S++      EG +++  Q+ D +      S    Y++++  L +    + A +  + M+
Sbjct: 545 YSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMV 604

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEG 395
           +SG  P+    +++IR L   G V E 
Sbjct: 605 SSGCVPNESTYTILIRGLASEGFVKEA 631



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 131/259 (50%), Gaps = 2/259 (0%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +I+++E     GC+  V     + N   K  L +EA+ +L+ M     +P+TI Y  V++
Sbjct: 386 VIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLK 445

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C     + A++LM  M       + IT+ ++I   C  G +E A  L K M  +GC+ 
Sbjct: 446 GLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 505

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L++YS ++DG+ + G  + ALELL  M  +G   SPN + Y+S+      +G + + + 
Sbjct: 506 DLISYSTVIDGLGKAGKTDEALELLNVMVNKG--MSPNTIIYSSIASALSREGRINKVIQ 563

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D ++      + V  + +I   C  G  + A + +  +V+ G V +   Y+ L+  L 
Sbjct: 564 MFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLA 623

Query: 353 RTKRLKEAEKLFSKMLASG 371
               +KEA+++ +++ + G
Sbjct: 624 SEGFVKEAQEMLTELCSKG 642



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 135/307 (43%), Gaps = 20/307 (6%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN ++  +C  G + +A  L      + + P+  TY  +++  C  GR+ DA  +   M 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAA---VPVPPNAYTYFPVVRALCARGRIADALAVLDEMP 149

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           R GCA     Y  +L+  CR G    A+ +L ++   G  C+ +V     V+   C +G 
Sbjct: 150 RRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG--CALDVGNCNLVLNAICDQGS 207

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + +AL +L  + + GC P+ V+ + ++KG C+        +L++++V      +   +++
Sbjct: 208 VDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 267

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+  L R    +   ++ ++M   G  PD    + +I  +C  G +     +   +   G
Sbjct: 268 LISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYG 327

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL-------------QGPYVDK 453
              +V    ++ LL GLC      E  +L   M  K   L             Q   VD+
Sbjct: 328 LKPNVVC--YNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDR 385

Query: 454 IVEHLKK 460
           ++E L++
Sbjct: 386 VIELLEQ 392



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 127/279 (45%), Gaps = 22/279 (7%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S+I+  C AGR  +A             A +VAY+A++ G CR G +E A  L   +   
Sbjct: 63  SLIRSLCAAGRTAEAARALSAAGG---GAGVVAYNAMVAGYCRAGQLESARRLAAAVP-- 117

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
                PN  TY  V++  C +G + +AL +LD M   GCAP       +++  C  G   
Sbjct: 118 ---VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFR 174

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A ++++ + A G     G  + ++  +     + +A  L   + + G +PD ++ + ++
Sbjct: 175 SAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVL 234

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI-HSVLLLGLCRKN-----HSVEAAKLAR 437
           + LC+  +     C+ E +E++  ++   + +  + L+  LCR       H V  A++A 
Sbjct: 235 KGLCMAKR---WGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEV-LAQMAE 290

Query: 438 FMLKKRIWLQGPYVDKIVE--HLKKSGDEELITNLPKIG 474
                 I +    +D I +  HLK +   E++  +P  G
Sbjct: 291 HGCTPDIRMYATIIDGICKEGHLKVA--HEILNRMPSYG 327



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 67/152 (44%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I++++     GC   +     + +   KA   +EA+ +L  M    + P+TIIY+++   
Sbjct: 492 IELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASA 551

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
              +G +    ++   +    +  D + Y ++I   C  G  E A      M   GC  N
Sbjct: 552 LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 611

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGG 265
              Y+ L+ G+   G ++ A E+L E+  +G 
Sbjct: 612 ESTYTILIRGLASEGFVKEAQEMLTELCSKGA 643


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 154/313 (49%), Gaps = 10/313 (3%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           Y  ++   C  G +  A  +  GM      PD   Y +M+ G C AGR  +A  L     
Sbjct: 145 YTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAM 204

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G   N+V Y+AL+DG C +G +E A+++   M+  G  CSPNV TYT +I  FC    
Sbjct: 205 AEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNG--CSPNVRTYTELISGFCKSRK 262

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +  A+ +  RM   G  PN VT + LI+G C +G LD AY+L+  +   G V +    S 
Sbjct: 263 LDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSV 322

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+  L + +R+ EA+ L   ++  G+K + +  + +I  LC  G+      L + +   G
Sbjct: 323 LIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQG 382

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY-----VDKIVEHLKKS 461
           F+   D+  +S L+ GLCR+    EA  +   M++K +    P      +D++V  +   
Sbjct: 383 FVP--DAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQ-PSPVTYTIIIDELVREVGAD 439

Query: 462 GDEELITNLPKIG 474
           G ++++  +   G
Sbjct: 440 GSKKILDKMIAAG 452



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 153/309 (49%), Gaps = 8/309 (2%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +MP  +LR     Y  +I  +C  GD+ A+   +  +      PD   Y S + G+C AG
Sbjct: 66  RMPARNLR----TYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAG 121

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            L  AC LF +M   GC      Y+ALL G+C  G +  A+ +   M+ +G  C+P+   
Sbjct: 122 LLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADG--CAPDPHV 179

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y +++   CG G  +EA  +L    A G  PN V  + LI G+C  G+L+ A  + +++ 
Sbjct: 180 YATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMD 239

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G   +   Y+ L+    ++++L  A  LFS+M+ +G+ P+ +  + +I+  C  GQ+ 
Sbjct: 240 VNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLD 299

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
             + L + +E  G +   +    SVL+  LC+     EA  L   +++K I +       
Sbjct: 300 CAYRLLQSMENSGLVP--NEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTS 357

Query: 454 IVEHLKKSG 462
           +++ L K+G
Sbjct: 358 LIDGLCKAG 366



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 137/288 (47%), Gaps = 4/288 (1%)

Query: 124 GCV-VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GCV  +     ++  LC  A +  EAM V   M      PD  +Y  ++   C  G    
Sbjct: 137 GCVRTAFTYTALLHGLC-GAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTRE 195

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A+ L+         P+++ Y ++I G+CN G LE A  +F+ M  +GC+ N+  Y+ L+ 
Sbjct: 196 AETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELIS 255

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G C+   ++RA+ L   M   G    PNVVTYT++IQ  C  G +  A  +L  ME  G 
Sbjct: 256 GFCKSRKLDRAMMLFSRMVDAG--LVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGL 313

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN  T S LI   C    + EA  L+  ++  G   +   Y+SL+  L +  R   A++
Sbjct: 314 VPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADR 373

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L   +++ G  PD    S +I  LC   ++ E   + +D+ + G   S
Sbjct: 374 LMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPS 421



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 144/313 (46%), Gaps = 13/313 (4%)

Query: 79  RFFIWAALQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM-K 133
           R F+   L+   R ++F Y       C    +++  S    V    + +GC     +   
Sbjct: 128 RLFVLMPLRGCVR-TAFTYTALLHGLCGAGMVREAMS----VFAGMQADGCAPDPHVYAT 182

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC   R   EA  +L         P+ ++YN +I  +C  GD+  A ++ + M + 
Sbjct: 183 MVHGLCGAGR-TREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVN 241

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P++ TY  +I GFC + +L+ A  LF  M   G   N+V Y+AL+ G C  G ++ A
Sbjct: 242 GCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCA 301

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL  ME  G    PN  T + +I   C    + EA  +L  +   G   N +  ++LI
Sbjct: 302 YRLLQSMENSG--LVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLI 359

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G    A +L+  +V+ G V     YSSL+  L R K L EA  +   M+  GV+
Sbjct: 360 DGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQ 419

Query: 374 PDGLACSVMIREL 386
           P  +  +++I EL
Sbjct: 420 PSPVTYTIIIDEL 432



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 161/340 (47%), Gaps = 8/340 (2%)

Query: 112 IIIDVVEAYKEEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           + +DV E     GC  +V+   ++I   C K+R  + AM +  +M +  L P+ + Y  +
Sbjct: 230 LAVDVFERMDVNGCSPNVRTYTELISGFC-KSRKLDRAMMLFSRMVDAGLVPNVVTYTAL 288

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I+  C  G +  A  L++ M    L P+  T   +I   C   R+ +A  L   + + G 
Sbjct: 289 IQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGI 348

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             N + Y++L+DG+C+ G    A  L+  +  +G    P+  TY+S+I   C +  + EA
Sbjct: 349 KVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQG--FVPDAHTYSSLIDGLCRQKELSEA 406

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           + +LD M   G  P+ VT + +I     E   D + +++DK++A G       Y+  V  
Sbjct: 407 MLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRS 466

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
                R+++AE +   M+  GV P+ +  + +I      G   + F  ++ +   G   +
Sbjct: 467 YCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPN 526

Query: 411 VDSDIHSVLLLGLCRKNHS--VEAAKLARFMLKKRIWLQG 448
            +S  ++VLL  L +K  S  + A  ++ + + +  +L G
Sbjct: 527 EES--YTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHG 564



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 142/326 (43%), Gaps = 23/326 (7%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC +  L+ EAM VL  M E  ++P  + Y  +I     +     + +++  M   
Sbjct: 393 LIDGLCRQKELS-EAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAA 451

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ TY   ++ +C+ GR+EDA  +   M  HG   NLV Y+AL+ G   LG   +A
Sbjct: 452 GIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQA 511

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGK----------------GMMKEALGILDRM 297
                 M   G  C PN  +YT ++++   K                  MK   G+L+ M
Sbjct: 512 FSTFKHMVANG--CKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEM 569

Query: 298 EALGCAPNRVTI-STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
             L   P+ + I +  +   C    LDEA  L+ ++ +     S   Y+S++    R K 
Sbjct: 570 VKLQ-LPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKM 628

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
           L EA      M+ SG  P   +   +I  LC  G +     ++ D+    +  + +    
Sbjct: 629 LTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEY--NYEEIAW 686

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKK 442
            +L+ GL +K +  E + L   M +K
Sbjct: 687 RILIDGLLQKGYVAECSSLLSVMEEK 712



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 130/311 (41%), Gaps = 18/311 (5%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++   E+G   S     +I +   +   A+ +  +L KM    ++PD   Y   +R +C
Sbjct: 409 VLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYC 468

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            +G M  A+ +M  M    + P+++TY ++I G+ N G    A   FK M  +GC  N  
Sbjct: 469 HEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEE 528

Query: 236 AYSALLD----------------GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           +Y+ LL                  I ++  M+    LL EM K        +  Y   + 
Sbjct: 529 SYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKL--QLPSEIDIYNCFLT 586

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C    + EA  +L  M++    P+    +++I   C    L EA   +D +V  G + 
Sbjct: 587 SLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIP 646

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y  ++  L     ++ A+++F  ML+     + +A  ++I  L   G V E   L 
Sbjct: 647 QLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLL 706

Query: 400 EDIEKIGFLSS 410
             +E+  +  S
Sbjct: 707 SVMEEKNYRPS 717


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 158/300 (52%), Gaps = 5/300 (1%)

Query: 137 NLCEKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
           +LC KA+  ++A  +   M  E    PD + Y+ +I  FC+  ++  A++L K M  ++ 
Sbjct: 455 SLC-KAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNC 513

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            P++ TY + + G    GR+ DA G+++ M   GC+ +++ YS L+ G       ++A E
Sbjct: 514 VPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHE 573

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           L   M   G  C PN VTY  ++   C +    EA  +  +M   GC P+RVT +TL+ G
Sbjct: 574 LFETMISRG--CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYG 631

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           FC  G +++A ++ D++V+ G       Y+ L+    R  +  EA++LF  M++   KPD
Sbjct: 632 FCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPD 691

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            ++ ++MI  L    ++ +   ++E +E+     S D   ++ L+ GLC +    EA K+
Sbjct: 692 TVSHNIMIDGLSKAKRLDDAVEVFERMEQ-DHGCSPDLVTYNSLIFGLCGEQRLSEAMKV 750



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 159/315 (50%), Gaps = 12/315 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG-- 191
           VI  LC+  R+ + A+ +L  M +    PD   ++ +I   C+   +  A E ++GM   
Sbjct: 380 VIQELCKAGRV-DSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRK 438

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM-KRHGCAANLVAYSALLDGICRLGSM 250
           +        +Y S++   C A ++  A  +F  M        ++V+YS L+DG C++  +
Sbjct: 439 ISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDEL 498

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
            RA +L  +M     +C PNV TY + +     KG + +A G+ + M A GC+P+ +T S
Sbjct: 499 GRAEKLYKQMIDL--NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYS 556

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           TLI GF +    D+A++L + +++ G   +   Y+ L+  L +  +  EA +LF KM+  
Sbjct: 557 TLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER 616

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNH 428
           G  PD +  + ++   C  G++ +   +++++   G     D D+  ++ LL G  R   
Sbjct: 617 GCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGH----DPDVVAYNCLLKGFFRAGK 672

Query: 429 SVEAAKLARFMLKKR 443
             EA +L + M+ ++
Sbjct: 673 PGEAKQLFQVMVSRQ 687



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 156/336 (46%), Gaps = 15/336 (4%)

Query: 57  LDSTCVIEVLHRCFPSQSQM-GIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIID 115
           L+S C  + +H+ F   S M   R F+   +  S     F   +  E+ R ++    +ID
Sbjct: 453 LNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFC--KIDELGRAEKLYKQMID 510

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +        CV +V       N L  K R+A+ A  V  +M      PD I Y+ +I  F
Sbjct: 511 L-------NCVPNVTTYNAFLNGLMRKGRIAD-AQGVYEEMVAAGCSPDVITYSTLIHGF 562

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
                   A EL + M      P+ +TY  ++ G C   + ++A  LF+ M   GC  + 
Sbjct: 563 SLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDR 622

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V Y+ LL G C +G +E+A+E+  EM  +G D  P+VV Y  +++ F   G   EA  + 
Sbjct: 623 VTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHD--PDVVAYNCLLKGFFRAGKPGEAKQLF 680

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELVR 353
             M +  C P+ V+ + +I G      LD+A ++ +++      S     Y+SL+  L  
Sbjct: 681 QVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCG 740

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            +RL EA K+F ++    + PD  A +V++  +  G
Sbjct: 741 EQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAIKCG 776



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 170/350 (48%), Gaps = 7/350 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S+M    C++  + +   + +++  A + +  + +V     +  LC+  ++  +A    R
Sbjct: 273 SYMVLAHCKLENLDEAFKLFLEM--AVESKAPLNNVAWTAFLSGLCKSGKI-EQAFEACR 329

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M E  L     +Y+ +IRL  E G +  A+E    +   ++ P   T  S+I+  C AG
Sbjct: 330 TMQE-SLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAG 388

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           R++ A  L + M + G   ++  +S L++ +C+   ++ A E L  M+++    S +  +
Sbjct: 389 RVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFS 448

Query: 274 YTSVIQIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           Y S++   C    + +A  I   M       P+ V+ S LI GFC    L  A +L  ++
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +    V +   Y++ +  L+R  R+ +A+ ++ +M+A+G  PD +  S +I    L  + 
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +   L+E +   G     ++  ++ LL GLC+++   EA +L R M+++
Sbjct: 569 DQAHELFETMISRG--CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER 616



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 170/381 (44%), Gaps = 25/381 (6%)

Query: 77  GIRFFIWAALQS-SYRHSSFMYNRACEMSRIKQNPSI--IIDVVEAYKEEGCVVSVKMMK 133
            + FF W  LQ+ +++H  F YN  C + ++ ++  +     V E    +G V +     
Sbjct: 113 ALTFFRW--LQARNFKHDVFTYN--CLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYA 168

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG-----DMIAADELMK 188
           V+       R ++EA+    +M +   +P + +Y  V       G       +   +L K
Sbjct: 169 VLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEK 228

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            + +     +++   +++  F    +  +A  LF+ M + GC  +   YS ++   C+L 
Sbjct: 229 RVAV-----EMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLE 283

Query: 249 SMERALELLGEMEKEGGDCSP-NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           +++ A +L  EM  E    +P N V +T+ +   C  G +++A      M+    + ++ 
Sbjct: 284 NLDEAFKLFLEMAVESK--APLNNVAWTAFLSGLCKSGKIEQAFEACRTMQE-SLSSSQP 340

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSV--SSGGCYSSLVVELVRTKRLKEAEKLFS 365
               LI+     G +D+A +   + +AG ++  SSG C+ S++ EL +  R+  A  L  
Sbjct: 341 VYDMLIRLLIESGRIDKAEEACLE-IAGRNIQPSSGTCH-SVIQELCKAGRVDSALSLLE 398

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            M+  G  PD    S++I ELC   ++ E     + +++     S     ++ LL  LC+
Sbjct: 399 TMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCK 458

Query: 426 KNHSVEAAKLARFMLKKRIWL 446
                +A  +   M+ +R ++
Sbjct: 459 AKKVHQAFAIFSTMVSERSFV 479



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 130/336 (38%), Gaps = 41/336 (12%)

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R   EA+   R +   + + D   YN ++       D+  A ++ + M    + P+  TY
Sbjct: 108 RDGGEALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTY 167

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL---LDGICRLGSMER------- 252
             +++  C     ++A   F  M   G   +   Y  +   L    + G   R       
Sbjct: 168 AVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLE 227

Query: 253 -------------------------ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
                                    A +L   M K G  C P+   Y+ ++   C    +
Sbjct: 228 KRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSG--CKPDATIYSYMVLAHCKLENL 285

Query: 288 KEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
            EA  +   M     AP N V  +  + G C  G +++A++   + +     SS   Y  
Sbjct: 286 DEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEAC-RTMQESLSSSQPVYDM 344

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+  L+ + R+ +AE+   ++    ++P    C  +I+ELC  G+V     L E + K G
Sbjct: 345 LIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRG 404

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +    D   HS+L+  LC+ +   EA +  + M +K
Sbjct: 405 YCP--DMATHSMLINELCKADKIQEAQEFLQGMDRK 438



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 92/230 (40%), Gaps = 41/230 (17%)

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +V TY  ++        +K+A  + ++M A G  PN  T + L++  C E N DEA +  
Sbjct: 128 DVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFF 187

Query: 330 DKVVAGGSVSSGGCYS-----------------------------------SLVVELVRT 354
            ++V  G   S   Y                                    +L+V  V  
Sbjct: 188 GEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQ 247

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED--IEKIGFLSSVD 412
            +  EA KLF  M+ SG KPD    S M+   C    + E F L+ +  +E    L++V 
Sbjct: 248 DKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNV- 306

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
               +  L GLC+     +A +  R M ++ +    P  D ++  L +SG
Sbjct: 307 --AWTAFLSGLCKSGKIEQAFEACRTM-QESLSSSQPVYDMLIRLLIESG 353


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 185/396 (46%), Gaps = 19/396 (4%)

Query: 42  NPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRAC 101
           +P +I + L      L +  ++  L R     +  G  F +  A    YR S+F  N A 
Sbjct: 102 SPASILRALPASSRPLVADMLVLALARASQPLAAYGA-FLLAGADYPRYRPSAFSVN-AL 159

Query: 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-----LCEKARLANEAMWVLRKMP 156
             + ++ +    +D+ E          V   K  FN     LC+  +L  +A  V + M 
Sbjct: 160 LAALVRADR---VDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQL-RKAGDVAKDMR 215

Query: 157 EFDLRPDTIIYNNVIRLFCE---KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            + L P  + YN +I  + +    G M   D L+K M    + P+++T+  +I G+C   
Sbjct: 216 GWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLINGYCKES 275

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            +  A  +F+ M++HG  AN+V Y++L+ G+CR G +E +++L+ EME+ G    P   T
Sbjct: 276 NITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLATLP---T 332

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
             SV+  FC KGMM EA G +D M   G  PN VT +TLI G+   G + EA      + 
Sbjct: 333 LNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMA 392

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G       Y+ L+     +   +    L  +M  +GVK D +  +V+I  LC  G+V 
Sbjct: 393 GKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVR 452

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           +   L +++ ++G         ++ ++ G C K  +
Sbjct: 453 KAVKLLDEMVEVGL--EPKHRTYNAIINGFCEKGDA 486



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 3/227 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + +VE  +E G      +  V+   C+K  +     WV   M +  ++P+ + YN +I  
Sbjct: 316 MKLVEEMEELGLATLPTLNSVLNGFCKKGMMVEAEGWV-DGMAQKGMKPNVVTYNTLIDG 374

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +   G M  A      M    + PD+ TY  +I GF  +       GL   MK  G  A+
Sbjct: 375 YQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKAD 434

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           LV Y+ L+  +C  G + +A++LL EM + G    P   TY ++I  FC KG  K A  I
Sbjct: 435 LVTYNVLIGALCCKGEVRKAVKLLDEMVEVG--LEPKHRTYNAIINGFCEKGDAKGAHDI 492

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
             RME      N VT +  +K FC  G +DEA  ++++++  G V +
Sbjct: 493 RIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPN 539



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 133/289 (46%), Gaps = 37/289 (12%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L++M +  + P+ + +N +I  +C++ ++ AA ++ + M    +  +++TY S++ G C
Sbjct: 248 LLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLC 307

Query: 211 NAGRLEDACGLFKVMKRHGCAA----------------------------------NLVA 236
             G++ED+  L + M+  G A                                   N+V 
Sbjct: 308 REGKVEDSMKLVEEMEELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVT 367

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y+ L+DG  RLG M+ A    G M  +G   SP+V TY  +I  F      +   G+LD 
Sbjct: 368 YNTLIDGYQRLGKMKEATAAKGAMAGKG--ISPDVKTYNCLITGFTTSTDWRSVSGLLDE 425

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M+  G   + VT + LI   C +G + +A +L+D++V  G       Y++++        
Sbjct: 426 MKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGD 485

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG-FCLYEDIEK 404
            K A  +  +M     + + + C+V ++  C  G++ E    L E +EK
Sbjct: 486 AKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEK 534



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +++  KE G    +    V+   LC K  +  +A+ +L +M E  L P    YN +I  F
Sbjct: 422 LLDEMKETGVKADLVTYNVLIGALCCKGEV-RKAVKLLDEMVEVGLEPKHRTYNAIINGF 480

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           CEKGD   A ++   M       +++T    +K FC  G++++A  +   M   G   N 
Sbjct: 481 CEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNR 540

Query: 235 VAYSALLDGICRLG 248
           + Y  +  G+   G
Sbjct: 541 ITYEIINSGMIEKG 554


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 175/342 (51%), Gaps = 12/342 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C + R+++       +V+    +GC+  V     +     + R A+EA  +L ++PE ++
Sbjct: 256 CGLGRVRE----AARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNV 311

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
               +++N VI     +G +  A EL + MGL    PD  TY  ++ G C  GR+  A  
Sbjct: 312 ----VLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVR 367

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L + M++ G A N+V Y+ +L   C+ G  +    LL EM  +G   + N   Y  +I  
Sbjct: 368 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKG--LTLNSQGYNGMIYA 425

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G M EA+G++  M + GC P+  + +T+I   C    ++EA  + + ++  G V++
Sbjct: 426 LCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVAN 485

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  Y++++  L+R  R ++A +L  +M+  G   D ++ + +I+ +C  G V     L E
Sbjct: 486 GITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLE 545

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           ++ + G   +  S  +++L+  LC++    +A +L++ ML +
Sbjct: 546 EMAEKGIKPNNVS--YNILISELCKERRVRDALELSKQMLNQ 585



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 156/332 (46%), Gaps = 32/332 (9%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R A+EA+ +LR M      PD ++Y  VI   C++G +  A  L+  M L+    
Sbjct: 185 LCRLGR-ADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAA 243

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ T+  +++G C  GR+ +A  L   M   GC   ++ Y  LL G+CR+   + A  +L
Sbjct: 244 DVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAML 303

Query: 258 GEMEK---------------EG--------------GDCSPNVVTYTSVIQIFCGKGMMK 288
           G + +               EG                C P+  TY+ ++   C  G + 
Sbjct: 304 GRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIG 363

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            A+ +L  ME  G APN VT + ++  FC  G  D+   L++++ A G   +   Y+ ++
Sbjct: 364 SAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMI 423

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L +  R+ EA  L  +M + G  PD  + + +I  LC   Q+ E   ++E++ + G +
Sbjct: 424 YALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVV 483

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           +  +   ++ ++  L R     +A +LA+ M+
Sbjct: 484 A--NGITYNTIIHALLRDGRWQDAVRLAKEMI 513



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 159/324 (49%), Gaps = 10/324 (3%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++ E    +GC        ++ + LC+  R+ + A+ +LR+M +    P+ + Y  V+  
Sbjct: 332 ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGS-AVRLLREMEKKGFAPNVVTYTIVLHS 390

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+ G       L++ M    L  +   Y  MI   C  GR+++A GL + M+  GC  +
Sbjct: 391 FCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPD 450

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           + +Y+ ++  +C    ME A  +   + +EG     N +TY ++I      G  ++A+ +
Sbjct: 451 ICSYNTIIYHLCNNEQMEEAEHMFENLLEEG--VVANGITYNTIIHALLRDGRWQDAVRL 508

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M   GC+ + V+ + LIK  C +GN+D +  L++++   G   +   Y+ L+ EL +
Sbjct: 509 AKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 568

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            +R+++A +L  +ML  G+ PD +  + +I  LC  G +     L E +       +V  
Sbjct: 569 ERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHN----ENVHP 624

Query: 414 DI--HSVLLLGLCRKNHSVEAAKL 435
           DI  +++L+   C+     +AA L
Sbjct: 625 DIITYNILISWHCKVRLLDDAAML 648



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 145/317 (45%), Gaps = 9/317 (2%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIA 182
           G   S +   V+ ++  +A    +A+ + R+M   D + P T  +    R  C  G    
Sbjct: 134 GVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRADE 193

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L++GM      PD + Y ++I   C+ G + +A  L   M   GCAA++  +  ++ 
Sbjct: 194 ALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVR 253

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C LG +  A  L+  M  +G  C P V+TY  ++Q  C      EA  +L R+  L  
Sbjct: 254 GMCGLGRVREAARLVDRMMTKG--CMPGVMTYGFLLQGLCRVRQADEARAMLGRVPEL-- 309

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
             N V  +T+I G   EG L EA +L + +   G       YS L+  L +  R+  A +
Sbjct: 310 --NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVR 367

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           L  +M   G  P+ +  ++++   C  G   +   L E++   G   +++S  ++ ++  
Sbjct: 368 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGL--TLNSQGYNGMIYA 425

Query: 423 LCRKNHSVEAAKLARFM 439
           LC+     EA  L + M
Sbjct: 426 LCKDGRMDEAMGLIQEM 442



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 141/301 (46%), Gaps = 6/301 (1%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
           Q      S + +  C++ RI       + ++   +++G   +V    ++ +   K  + +
Sbjct: 343 QPDAHTYSILMHGLCKLGRIGS----AVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 398

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +   +L +M    L  ++  YN +I   C+ G M  A  L++ M      PDI +Y ++I
Sbjct: 399 DTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 458

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
              CN  ++E+A  +F+ +   G  AN + Y+ ++  + R G  + A+ L  EM   G  
Sbjct: 459 YHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG-- 516

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           CS +VV+Y  +I+  C  G +  +L +L+ M   G  PN V+ + LI   C E  + +A 
Sbjct: 517 CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL 576

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L  +++  G       Y++L+  L +   +  A  L  K+    V PD +  +++I   
Sbjct: 577 ELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWH 636

Query: 387 C 387
           C
Sbjct: 637 C 637



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 34/234 (14%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I+ LC+  R+ +EAM ++++M      PD   YN +I   C    M  A+ + + +   
Sbjct: 422 MIYALCKDGRM-DEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEE 480

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  + ITY ++I      GR +DA  L K M  HGC+ ++V+Y+ L+  +C+ G+++R+
Sbjct: 481 GVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRS 540

Query: 254 LELLGEMEKEG---------------------------------GDCSPNVVTYTSVIQI 280
           L LL EM ++G                                    +P++VTY ++I  
Sbjct: 541 LVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLING 600

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            C  G M  AL +L+++      P+ +T + LI   C    LD+A  L+++ +A
Sbjct: 601 LCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMA 654



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 4/182 (2%)

Query: 122 EEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           EEG V + +    +I  L    R   +A+ + ++M       D + YN +I+  C+ G++
Sbjct: 479 EEGVVANGITYNTIIHALLRDGRW-QDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNV 537

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             +  L++ M    + P+ ++Y  +I   C   R+ DA  L K M   G A ++V Y+ L
Sbjct: 538 DRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTL 597

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++G+C++G M  AL LL ++  E  +  P+++TY  +I   C   ++ +A  +L+R  A 
Sbjct: 598 INGLCKMGWMHAALNLLEKLHNE--NVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAA 655

Query: 301 GC 302
            C
Sbjct: 656 VC 657



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 30/251 (11%)

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L ++ +R G   +  +Y+ +L  + R      AL L   M        P   T+    + 
Sbjct: 126 LDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRD-RVPPTTFTFGVAARA 184

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G   EAL +L  M   GC P+ V   T+I   C +G + EA  L+++++  G  + 
Sbjct: 185 LCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAAD 244

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC----------LGG 390
              +  +V  +    R++EA +L  +M+  G  P  +    +++ LC          + G
Sbjct: 245 VNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLG 304

Query: 391 QVLE----------GFCLYED--------IEKIGFLS-SVDSDIHSVLLLGLCRKNHSVE 431
           +V E          G CL E          E +G      D+  +S+L+ GLC+      
Sbjct: 305 RVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGS 364

Query: 432 AAKLARFMLKK 442
           A +L R M KK
Sbjct: 365 AVRLLREMEKK 375



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 115 DVVEAYKE---EGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           D V   KE    GC + V     +I  +C+   + + ++ +L +M E  ++P+ + YN +
Sbjct: 504 DAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNV-DRSLVLLEEMAEKGIKPNNVSYNIL 562

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I   C++  +  A EL K M    L PDI+TY ++I G C  G +  A  L + +     
Sbjct: 563 ISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 622

Query: 231 AANLVAYSALLDGICRLGSMERALELL 257
             +++ Y+ L+   C++  ++ A  LL
Sbjct: 623 HPDIITYNILISWHCKVRLLDDAAMLL 649


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 174/368 (47%), Gaps = 44/368 (11%)

Query: 134 VIFNLC----EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           V++N+C     KA   + A     ++    L+PD + Y ++I + C+ G +  A+EL   
Sbjct: 250 VLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQ 309

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M      P    Y +MI G+ +AGR EDA  L + ++  GC  ++V+++++L  + +   
Sbjct: 310 MEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRK 369

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--------- 300
           ++ AL L   M+K   D  PN  TY  +I + C  G ++EA  ILD ME           
Sbjct: 370 VDEALSLFEVMKK---DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTV 426

Query: 301 --------------------------GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
                                     GC P+ VT  +LI G   +G +DEAY+L +K++ 
Sbjct: 427 NIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLD 486

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G  ++   Y+SL+       R ++  K+F +++  G KPD    +  +  +   G+V +
Sbjct: 487 AGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEK 546

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           G  ++EDI   GFL  V S  +S+L+ GL +   + E + +   M ++   L     + +
Sbjct: 547 GRMIFEDIRSYGFLPDVRS--YSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAV 604

Query: 455 VEHLKKSG 462
           V+   KSG
Sbjct: 605 VDGFCKSG 612



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 156/327 (47%), Gaps = 5/327 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  +  G +  V+   ++ +   KA  A E   +   M +     D   YN V+  FC
Sbjct: 550 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 609

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A E+++ M    + P + TY +++ G     RL++A  LF+  K  G   N+V
Sbjct: 610 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVV 669

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS+L+DG  ++G ++ A  +L EM K+G   +PNV T+ S++        + EAL    
Sbjct: 670 LYSSLIDGFGKVGRIDEAYLILEEMMKKG--LTPNVYTWNSLLDALVKAEEINEALVCFQ 727

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+ + C PN  T S LI G C     ++A+     +   G V +   Y++++  L +  
Sbjct: 728 SMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVG 787

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            + +A  LF +  A+G  PD  + + +I  +    + +E + ++E+    G   ++ S I
Sbjct: 788 NITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCI 847

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKK 442
               LL    K+  +E A +   +L++
Sbjct: 848 S---LLDALNKSECLEQAAIVGAVLRE 871



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 142/280 (50%), Gaps = 14/280 (5%)

Query: 161 RPDTIIYNNVIRLF-----CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
           +PD  + N  +         EKG MI  D  ++  G +   PD+ +Y  +I G   AG+ 
Sbjct: 525 KPDLTLLNTYMDCVFKAGEVEKGRMIFED--IRSYGFL---PDVRSYSILIHGLTKAGQA 579

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
            +   +F  MK+ G A +  AY+A++DG C+ G + +A E+L EM+++     P V TY 
Sbjct: 580 RETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC--VQPTVATYG 637

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           +++        + EA  + +  ++ G   N V  S+LI GF   G +DEAY ++++++  
Sbjct: 638 AIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK 697

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   ++SL+  LV+ + + EA   F  M      P+    S++I  LC   +  + 
Sbjct: 698 GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKA 757

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           F  ++D++K G + +V +  ++ ++ GL +  +  +A  L
Sbjct: 758 FVFWQDMQKQGLVPNVVT--YTTMISGLAKVGNITDAYSL 795



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 140/289 (48%), Gaps = 3/289 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  +E GC+ SV     I     K R  +EA+ +   M + D  P++  YN +I + C
Sbjct: 341 LLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLC 399

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G +  A  ++  M    L+P+++T   M+   C A +LE+A  +F+   + GC  + V
Sbjct: 400 LGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCV 459

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y +L+DG+ + G ++ A  L  +M   G + +P  V YTS+I+ F   G  ++   I  
Sbjct: 460 TYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANP--VVYTSLIRNFFIHGRKEDGHKIFK 517

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            +   GC P+   ++T +      G +++   + + + + G +     YS L+  L +  
Sbjct: 518 ELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAG 577

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + +E   +F  M   G   D  A + ++   C  G+V + + + E++++
Sbjct: 578 QARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE 626



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 159/337 (47%), Gaps = 17/337 (5%)

Query: 116 VVEAYKEEGCVVSVKMMK------------VIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
           +V A + +  V++V +M+            V+     +AR    A+ +LR+M E      
Sbjct: 154 LVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVG 213

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
             ++  ++R    +G +  A  L+  +    L PDI+ Y   I  F  AG ++ A   F 
Sbjct: 214 VHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFH 273

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            +K  G   + V+Y++++  +C+ G +  A EL  +ME E     P    Y ++I  +  
Sbjct: 274 ELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERS--VPCAYAYNTMIMGYGS 331

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G  ++A  +L+R+   GC P+ V+ ++++     +  +DEA  L + V+   +  +   
Sbjct: 332 AGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFE-VMKKDAEPNSST 390

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+ ++  L    R++EA ++  +M  + + P+ L  ++M+  LC   ++ E + ++E   
Sbjct: 391 YNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESAS 450

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           + G   + D   +  L+ GL +K    EA +L   ML
Sbjct: 451 QRG--CNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML 485



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 114/234 (48%), Gaps = 3/234 (1%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +++E  KE+    +V     I +   K    +EA  +  +     +  + ++Y+++I  F
Sbjct: 619 EILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGF 678

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            + G +  A  +++ M    L P++ T+ S++     A  + +A   F+ MK   C  N 
Sbjct: 679 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNT 738

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             YS L++G+CR+    +A     +M+K+G    PNVVTYT++I      G + +A  + 
Sbjct: 739 YTYSILINGLCRVQKYNKAFVFWQDMQKQG--LVPNVVTYTTMISGLAKVGNITDAYSLF 796

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV-VAGGSVSSGGCYSSL 347
           +R +A G  P+  + + LI+G        EAYQ+ ++  + G  ++   C S L
Sbjct: 797 ERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLL 850



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 4/263 (1%)

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
           D+ A +++++ M ++           +      A RL+DA     VM+R        AY+
Sbjct: 124 DLAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYT 183

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            L+  +      ERALELL +M++ G +    V  +T++++    +G + +AL ++D ++
Sbjct: 184 VLIGALAEARRPERALELLRQMQEVGYEV--GVHLFTTLVRALAREGQVADALALVDEVK 241

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
                P+ V  +  I  F   GN+D A++   ++ A G       Y+S++  L +  RL 
Sbjct: 242 GSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLG 301

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
           EAE+LF++M A    P   A + MI      G+  + + L E + + G + SV S   + 
Sbjct: 302 EAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVS--FNS 359

Query: 419 LLLGLCRKNHSVEAAKLARFMLK 441
           +L  L +K    EA  L   M K
Sbjct: 360 ILTCLGKKRKVDEALSLFEVMKK 382


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 140/265 (52%), Gaps = 4/265 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  +   GD+    +L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   ++ +A  LF  M   G   N V ++ L+DG C+ G ++ A+E   +M  +   C
Sbjct: 215 GLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQ---C 271

Query: 268 S-PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+++TY ++I   C KG +K+A  +LD M   G  P+++T +TLI G C EG+LD A+
Sbjct: 272 FLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAF 331

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L + +V          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E 
Sbjct: 332 ELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEF 391

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSV 411
           C    V     L +++++ G +  V
Sbjct: 392 CKKEDVKTAAKLLKEMQRQGHVPCV 416



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++ +   +  ++++    +G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLD----KGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           ++ + AM   ++M      PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 KV-DSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G L+ A  L + M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P+  TYT +I  FC K  +K A  +L  M+  G  P  VT
Sbjct: 375 VG--LKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A    G    V    V+ N LC+++++ NEA  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMHASGVQPDVYTYSVLINGLCKESKM-NEANDLFNEMLDKGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G + +A E  K M      PD+ITY ++I G C  G L+ A  L   M+  G   + + Y
Sbjct: 255 GKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G ++ A EL   M KE      + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGNCKEGDLDSAFELRETMVKES--IRLDDVAYTALISGLCQEGRATDAEKMLREM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
            ++G  P+  T + +I  FC + ++  A +L+ ++   G V
Sbjct: 373 LSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHV 413



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 114/240 (47%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G + DA   F++ + H           +L+ + +L    +  +L+
Sbjct: 65  DIYVFSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               KE  +C    ++  +  ++  FC +G +  A  + D +   G  P+ V+ +TL+ G
Sbjct: 121 WGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LD+ ++L + + A G       YS L+  L +  ++ EA  LF++ML  G+ P+
Sbjct: 181 YIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V      Y+ +    FL   D   ++ L+ GLC+K    +A  L
Sbjct: 241 GVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLP--DLITYNTLIYGLCKKGDLKQAQDL 298


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 161/316 (50%), Gaps = 5/316 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    V+  LC+  R  ++A  V R M +  + PD   +N +I  FC  G++  A +  K
Sbjct: 228 VTFNSVLKGLCKHRRF-DKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYK 286

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD++++  +I  F   G+++ A    + MK  G   + V Y+ ++ G CR G
Sbjct: 287 EMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAG 346

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           SM  AL +  EM   G  C P+VVTY +++   C +  + +A  +L+ M+  G  P+  T
Sbjct: 347 SMSEALRVRDEMVGLG--CLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCT 404

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI G+C +GN ++A QL D ++          Y+SL+  + R   L +A +L+  M 
Sbjct: 405 FTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMH 464

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           A  + P+ +  S++I   C  GQV E F   +++   G L ++ +  ++ ++ G CR  +
Sbjct: 465 AREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMT--YNSIIKGYCRSGN 522

Query: 429 SVEAAKLARFMLKKRI 444
             +  +  + M++  I
Sbjct: 523 VKKGQQFLQKMMQDNI 538



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 160/300 (53%), Gaps = 4/300 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A  V+ +M +  + PD + +N +I      GD+ AA  L+  M    L P I+T+ S+
Sbjct: 174 DKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSV 233

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +KG C   R + A  +F+ M +   A ++ +++ L+ G CR+G +E A++   EM++ G 
Sbjct: 234 LKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRG- 292

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             +P+VV+++ +I +F  +G M  A   L  M+ LG  P+ V  + +I GFC  G++ EA
Sbjct: 293 -VTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEA 351

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            ++ D++V  G +     Y++L+  L +  RL +AE+L ++M   GV PD    + +I  
Sbjct: 352 LRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHG 411

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
            C  G   +   L++ +        V +  ++ L+ G+CRK    +A +L   M  + I+
Sbjct: 412 YCRDGNFEKALQLFDTLLHQRLRPDVVA--YNSLIDGMCRKGDLAKANELWDDMHAREIF 469



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 149/294 (50%), Gaps = 4/294 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A   LR+M    L PD +IY  VI  FC  G M  A  +   M  +   PD++TY ++
Sbjct: 314 DHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTL 373

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + G C   RL DA  L   MK  G   +L  ++ L+ G CR G+ E+AL+L   +  +  
Sbjct: 374 LNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQ-- 431

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+VV Y S+I   C KG + +A  + D M A    PN VT S LI   C +G ++EA
Sbjct: 432 RLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEA 491

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           +  +D++V+ G++ +   Y+S++    R+  +K+ ++   KM+   + PD +  + +I  
Sbjct: 492 FGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHG 551

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
                 +   F ++  +EK   +   D+  +++++ G   + +  EA ++ + M
Sbjct: 552 YIKEENMHGAFNVFNIMEKE--MVQPDAVTYNMIINGFSEQGNMEEAGRVFKKM 603



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 149/309 (48%), Gaps = 38/309 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI   C    ++ EA+ V  +M      PD + YN ++   C++  ++ A+EL+  M   
Sbjct: 338 VIGGFCRAGSMS-EALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKER 396

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ T+ ++I G+C  G  E A  LF  +       ++VAY++L+DG+CR G + +A
Sbjct: 397 GVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKA 456

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL  +M     +  PN VTY+ +I   C KG ++EA G LD M + G  PN +T +++I
Sbjct: 457 NELWDDMHAR--EIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSII 514

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL---------------- 357
           KG+C  GN+ +  Q + K++    +     +++L+   ++ + +                
Sbjct: 515 KGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQ 574

Query: 358 -------------------KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                              +EA ++F KM ASG++PD      +I      G   E F L
Sbjct: 575 PDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQL 634

Query: 399 YEDIEKIGF 407
           ++++   GF
Sbjct: 635 HDEMMHRGF 643



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 118/216 (54%), Gaps = 2/216 (0%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           LRPD + YN++I   C KGD+  A+EL   M   +++P+ +TY  +I   C  G++E+A 
Sbjct: 433 LRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAF 492

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           G    M   G   N++ Y++++ G CR G++++  + L +M ++  +  P+++T+ ++I 
Sbjct: 493 GFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQD--NILPDLITFNTLIH 550

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +  +  M  A  + + ME     P+ VT + +I GF  +GN++EA ++  K+ A G   
Sbjct: 551 GYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEP 610

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
               Y SL+   V     KEA +L  +M+  G  PD
Sbjct: 611 DRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 3/167 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           CEK ++  EA   L +M      P+ + YN++I+ +C  G++    + ++ M   ++ PD
Sbjct: 483 CEKGQV-EEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPD 541

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           +IT+ ++I G+     +  A  +F +M++     + V Y+ +++G    G+ME A  +  
Sbjct: 542 LITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFK 601

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           +M   G    P+  TY S+I      G  KEA  + D M   G AP+
Sbjct: 602 KMGASG--IEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 68/148 (45%)

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           D   N  T   ++  +C      +A  ++  ME     P+ VT + LI      G++D A
Sbjct: 152 DSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAA 211

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L+D +   G       ++S++  L + +R  +A+++F  M    V PD  + +++I  
Sbjct: 212 IALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGG 271

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            C  G+V E    Y+++++ G    V S
Sbjct: 272 FCRVGEVEEAMKFYKEMQQRGVTPDVVS 299


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 184/391 (47%), Gaps = 49/391 (12%)

Query: 87  QSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEK 141
           +S Y  +   YN      C+  R K      I++++  K +G    V     +I +LC  
Sbjct: 221 KSGYAPTIVTYNTVLHWYCKKGRFKA----AIELLDHMKSKGVDADVCTYNMLIHDLCRS 276

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM----------- 190
            R+A +   +LR M +  + P+ + YN +I  F  +G ++ A +L+  M           
Sbjct: 277 NRIA-KGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVT 335

Query: 191 --GLID----------------------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
              LID                      L P  ++Y  ++ G C     + A G +  MK
Sbjct: 336 FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMK 395

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           R+G     + Y+ ++DG+C+ G ++ A+ LL EM K+G D  P++VTY+++I  FC  G 
Sbjct: 396 RNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGID--PDIVTYSALINGFCKVGR 453

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
            K A  I+ R+  +G +PN +  STLI   C  G L EA ++ + ++  G       ++ 
Sbjct: 454 FKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNV 513

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           LV  L +  ++ EAE+    M + G+ P+ ++   +I      G+ L+ F +++++ K+G
Sbjct: 514 LVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVG 573

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
              +  +  +  LL GLC+  H  EA K  +
Sbjct: 574 HHPTFFT--YGSLLKGLCKGGHLREAEKFLK 602



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 168/370 (45%), Gaps = 22/370 (5%)

Query: 81  FIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCV---VSVKMMKVIFN 137
           F++ AL ++YR  +   +    + R+     +I D +E ++  G      SV     I  
Sbjct: 107 FVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILG 166

Query: 138 LCEKARLANEAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
              K+   + ++W  L++M +  + PD   +N +I + C +G    +  LM+ M      
Sbjct: 167 SVVKSG-EDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYA 225

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P I+TY +++  +C  GR + A  L   MK  G  A++  Y+ L+  +CR   + +   L
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLL 285

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L +M K      PN VTY ++I  F  +G +  A  +L+ M + G +PN VT + LI G 
Sbjct: 286 LRDMRKRM--IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGH 343

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
             EGN  EA ++   + A G   S   Y  L+  L +      A   + +M  +GV    
Sbjct: 344 ISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGR 403

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAK 434
           +  + MI  LC  G + E   L  ++ K G    +D DI  +S L+ G C         K
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDG----IDPDIVTYSALINGFC---------K 450

Query: 435 LARFMLKKRI 444
           + RF   K I
Sbjct: 451 VGRFKTAKEI 460



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 136/282 (48%), Gaps = 3/282 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CV  +    +I  LC+   L +EA+ +L +M +  + PD + Y+ +I  FC+ G    A 
Sbjct: 400 CVGRITYTGMIDGLCKNGFL-DEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAK 458

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           E++  +  + L P+ I Y ++I   C  G L++A  +++ M   G   +   ++ L+  +
Sbjct: 459 EIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSL 518

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G +  A E +  M  +G    PN V++  +I  +   G   +A  + D M  +G  P
Sbjct: 519 CKAGKVAEAEEFMRCMTSDG--ILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHP 576

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T  +L+KG C  G+L EA + +  + A  +      Y++L+  + ++  L +A  LF
Sbjct: 577 TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 636

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            +M+   + PD    + +I  LC  G+ +      ++ E  G
Sbjct: 637 GEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG 678



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 176/410 (42%), Gaps = 52/410 (12%)

Query: 40  QKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNR 99
           + + + I+  + T  A ++  C +      F +  ++  R +      +   +S+ +YN 
Sbjct: 428 EMSKDGIDPDIVTYSALINGFCKVGR----FKTAKEIVCRIYRVGLSPNGIIYSTLIYN- 482

Query: 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEF 158
            C M  +K+     I + EA   EG         V + +LC+  ++A EA   +R M   
Sbjct: 483 CCRMGCLKE----AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVA-EAEEFMRCMTSD 537

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            + P+T+ ++ +I  +   G+ + A  +   M  +  +P   TY S++KG C  G L +A
Sbjct: 538 GILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREA 597

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM------------------ 260
               K +     A + V Y+ LL  +C+ G++ +A+ L GEM                  
Sbjct: 598 EKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISG 657

Query: 261 ---------------EKEG-GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
                          E E  G+  PN V YT  +      G  K  +   ++M+ LG  P
Sbjct: 658 LCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTP 717

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           + VT + +I G+   G +++   L+ ++       +   Y+ L+    + K +  +  L+
Sbjct: 718 DIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLY 777

Query: 365 SKMLASGVKPDGLACSVMIRELC------LGGQVLEGF-CLYEDIEKIGF 407
             ++ +G+ PD L C  ++  +C      +G ++L+ F C   ++++  F
Sbjct: 778 RSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTF 827



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 138/307 (44%), Gaps = 7/307 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   L  EA   L+ +       DT++YN ++   C+ G++  A  L   M    + P
Sbjct: 588 LCKGGHL-REAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILP 646

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALEL 256
           D  TY S+I G C  G+   A    K  +  G    N V Y+  +DG+ + G  +  +  
Sbjct: 647 DSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYF 706

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             +M+  G   +P++VT  ++I  +   G +++   +L  M      PN  T + L+ G+
Sbjct: 707 REQMDNLGH--TPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGY 764

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
               ++  ++ L   ++  G +       SLV+ +  +  L+   K+    +  GV+ D 
Sbjct: 765 SKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDR 824

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
              +++I + C  G++   F L + +  +G   S+D D     ++ +  +NH  + +++ 
Sbjct: 825 YTFNMLISKCCANGEINWAFDLVKVMTSLGI--SLDKDTCDA-MVSVLNRNHRFQESRMV 881

Query: 437 RFMLKKR 443
              + K+
Sbjct: 882 LHEMSKQ 888



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 123/274 (44%), Gaps = 4/274 (1%)

Query: 162  PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
            PD +  ++++   CE   +    +++K      +  D  T+  +I   C  G +  A  L
Sbjct: 787  PDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDL 846

Query: 222  FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
             KVM   G + +     A++  + R    + +  +L EM K+G   SP    Y  +I   
Sbjct: 847  VKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQG--ISPESRKYIGLINGL 904

Query: 282  CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
            C  G +K A  + + M A    P  V  S +++     G  DEA  L+  ++    V + 
Sbjct: 905  CRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTI 964

Query: 342  GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
              +++L+    +   + EA +L   M   G+K D ++ +V+I  LC  G +   F LYE+
Sbjct: 965  ASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEE 1024

Query: 402  IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            ++  GFL++  +  +  L+ GL  +  +   A +
Sbjct: 1025 MKGDGFLANATT--YKALIRGLLARETAFSGADI 1056



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 52/100 (52%)

Query: 145  ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            A+EA  +LR M +  L P    +  ++ L C+ G++I A EL   M    L  D+++Y  
Sbjct: 945  ADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNV 1004

Query: 205  MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            +I G C  G +  A  L++ MK  G  AN   Y AL+ G+
Sbjct: 1005 LITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGL 1044



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 3/152 (1%)

Query: 128  SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            S K + +I  LC    +   A  V  +M    + P  +  + ++R   + G    A  L+
Sbjct: 894  SRKYIGLINGLCRVGDIKT-AFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLL 952

Query: 188  KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
            + M  + L P I ++ +++   C  G + +A  L  VM   G   +LV+Y+ L+ G+C  
Sbjct: 953  RFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAK 1012

Query: 248  GSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            G M  A EL  EM+ +G     N  TY ++I+
Sbjct: 1013 GDMALAFELYEEMKGDG--FLANATTYKALIR 1042


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 166/350 (47%), Gaps = 48/350 (13%)

Query: 136 FNLCEKARLANEAMWVLRKMPEFDLR-------------PDTIIYNNVIRLFCEKGDMIA 182
           F +  KAR  N  ++ L K  + DL                   YN +I   C++GDM+ 
Sbjct: 211 FRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVT 270

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L   M  + L PDI+TY S+I G+   G L+++  LF+ MK  GC  +++ Y+AL++
Sbjct: 271 AKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALIN 330

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
             C+   M +A   L EM+  G    PNVVTY+++I   C + M+++A+  L  M  +G 
Sbjct: 331 CFCKYEQMPKAFHFLHEMKNSG--LKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGL 388

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
           +PN  T ++LI   C  G L +A +L D+++      +   Y++L+  L +  R+ EAE 
Sbjct: 389 SPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAED 448

Query: 363 LFSKMLASGVKPDGLACSVMIR-------------------------ELCLGGQVLEGFC 397
           LF  M+ +GV P+    + ++                          +L L G ++ G C
Sbjct: 449 LFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLC 508

Query: 398 LYEDIEKIGFLSS--------VDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
               +E+  F+ S         +S I+++ +    +   +VEA  L + M
Sbjct: 509 SQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEM 558



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 144/309 (46%), Gaps = 5/309 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CV    +   +F++  +  +  EA     +M  F + P     N  +    + G    ++
Sbjct: 178 CVPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSN 237

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +  + M    +   + TY  MI   C  G +  A  LF  MK+ G   ++V Y++L+DG 
Sbjct: 238 KFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGY 297

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            +LG ++ +  L  EM+  G  C P+V+TY ++I  FC    M +A   L  M+  G  P
Sbjct: 298 GKLGLLDESFCLFEEMKDVG--CEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKP 355

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N VT STLI   C E  L +A + +  +   G   +   Y+SL+    +   L +A KL 
Sbjct: 356 NVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLA 415

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            +ML   V  + +  + ++  LC  G+++E   L+  + K G   ++ +  ++ L+ G  
Sbjct: 416 DEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKT--YTALVHGHI 473

Query: 425 RKNHSVEAA 433
            KN  VE A
Sbjct: 474 -KNKRVENA 481



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 150/319 (47%), Gaps = 4/319 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  K+ GC   V     + N   K     +A   L +M    L+P+ + Y+ +I   C
Sbjct: 309 LFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALC 368

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++  +  A + +  M  + L P+  TY S+I   C AG L DA  L   M +     N+V
Sbjct: 369 KEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVV 428

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ LLDG+C+ G M  A +L   M K G   +PN+ TYT+++        ++ AL +L 
Sbjct: 429 TYTTLLDGLCKEGRMMEAEDLFRAMIKAG--VTPNLKTYTALVHGHIKNKRVENALELLK 486

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            ++     P+ +   T+I G C +  L+E   ++ ++ A G  ++   Y+  +    +T 
Sbjct: 487 EIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTG 546

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           +  EA  L  +M   GV+   +   V+I  LC  G V E    +  +     L   +  +
Sbjct: 547 KTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFN-LQPNNVAV 605

Query: 416 HSVLLLGLCRKNHSVEAAK 434
            + L+ GLC+ N+ +EAAK
Sbjct: 606 CTALIDGLCKNNY-IEAAK 623



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 110/244 (45%), Gaps = 3/244 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD ++Y  +I   C +  +   + +M  M    +  + + Y   +  +   G+  +A  L
Sbjct: 495 PDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNL 554

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP-NVVTYTSVIQI 280
            + M   G    +V +  L+DG+C+ G +E A++    M     +  P NV   T++I  
Sbjct: 555 LQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMAD--FNLQPNNVAVCTALIDG 612

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C    ++ A  + D M+     P+++  + LI G     +  EA  +  ++   G    
Sbjct: 613 LCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELD 672

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+SLV  L +   +++A    ++M+  G+ PD + C  ++R+    G + E   L++
Sbjct: 673 LHAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHD 732

Query: 401 DIEK 404
           ++ K
Sbjct: 733 ELLK 736


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 159/302 (52%), Gaps = 5/302 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   + + A+ V+  M +    PD   YN V+   C+ G +  A  ++  M      P
Sbjct: 204 LCQNDHVGH-ALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLP 262

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI T+ ++I   C   RLE+A  L + +   G + ++  ++ L++ +C++G    AL L 
Sbjct: 263 DITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLF 322

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM+  G  C+P+ VTY ++I   C  G + +AL +L  ME+ GC  + +T +T+I G C
Sbjct: 323 EEMKNSG--CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 380

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +  ++EA ++ D++   G   +   +++L+  L + K++ +A +L ++M++ G++P+ +
Sbjct: 381 KKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNI 440

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + ++   C  G + +   + E +   GF   VD   +  L+ GLC+   +  A K+ R
Sbjct: 441 TYNSILTHYCKQGDIKKAADILETMTANGF--EVDVVTYGTLINGLCKAGRTQVALKVLR 498

Query: 438 FM 439
            M
Sbjct: 499 GM 500



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 143/301 (47%), Gaps = 3/301 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+      +G    V    ++ N   K    + A+ +  +M      PD + YN +I  
Sbjct: 284 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 343

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G +  A +L+K M         ITY ++I G C   R+E+A  +F  M   G + N
Sbjct: 344 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 403

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            + ++ L+DG+C+   ++ A EL+ +M  EG    PN +TY S++  +C +G +K+A  I
Sbjct: 404 AITFNTLIDGLCKDKKIDDAFELINQMISEG--LQPNNITYNSILTHYCKQGDIKKAADI 461

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L+ M A G   + VT  TLI G C  G    A +++  +   G   +   Y+ ++  L R
Sbjct: 462 LETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFR 521

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIGFLSSVD 412
              +++A  LF +M   G  PD L   ++ R LC  GG + E F    ++   GF+    
Sbjct: 522 RNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFS 581

Query: 413 S 413
           S
Sbjct: 582 S 582



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 171/386 (44%), Gaps = 41/386 (10%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           ++E+   E     +K   V FN     LC +A     A+ +L +M    + PD   +  +
Sbjct: 72  LLESVYSEMGARGIKPDVVTFNTLMKALC-RAHQVRTAVLMLEEMSSRGVAPDETTFTTL 130

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           ++ F E+G + AA  +   M  +      +T   +I G+C  GR+EDA G  +     G 
Sbjct: 131 MQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF 190

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             + + Y+  ++G+C+   +  AL+++  M +EG D  P+V TY  V+   C  G ++EA
Sbjct: 191 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHD--PDVFTYNIVVNCLCKNGQLEEA 248

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
            GIL++M   GC P+  T +TLI   C    L+EA  L  +V   G       ++ L+  
Sbjct: 249 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 308

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG---- 406
           L +      A +LF +M  SG  PD +  + +I  LC  G++ +   L +D+E  G    
Sbjct: 309 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 368

Query: 407 ---FLSSVDS-----------------DIHSV---------LLLGLCRKNHSVEAAKLAR 437
              + + +D                  D+  +         L+ GLC+     +A +L  
Sbjct: 369 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 428

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGD 463
            M+ + +       + I+ H  K GD
Sbjct: 429 QMISEGLQPNNITYNSILTHYCKQGD 454



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 158/312 (50%), Gaps = 6/312 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM-WVLRKM-PEFDLRPDTIIYNNVIRL 173
           +V   + EG  V + ++    +  E  +L ++A+  +L ++ P F ++ DT++YN+++ +
Sbjct: 4   LVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNV 63

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             E   M   + +   MG   + PD++T+ +++K  C A ++  A  + + M   G A +
Sbjct: 64  LVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPD 123

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              ++ L+ G    GS+E AL +   M + G  CS   VT   +I  +C  G +++ALG 
Sbjct: 124 ETTFTTLMQGFVEEGSIEAALRVKARMLEMG--CSATKVTVNVLINGYCKLGRVEDALGY 181

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           + +  A G  P+++T +T + G C   ++  A +++D +V  G       Y+ +V  L +
Sbjct: 182 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 241

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             +L+EA+ + ++M+  G  PD    + +I  LC G ++ E   L   +   G   S D 
Sbjct: 242 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGV--SPDV 299

Query: 414 DIHSVLLLGLCR 425
              ++L+  LC+
Sbjct: 300 YTFNILINALCK 311


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 170/339 (50%), Gaps = 36/339 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+       A+ VLRK+    ++P+ ++YN +I   C+   +I A +L   M + 
Sbjct: 175 LINGLCKTGE-TRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVK 233

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            ++PD++TY ++I G    GRL++A GLF  M       ++  ++ L+DG+C+ G M++A
Sbjct: 234 RIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKA 293

Query: 254 LELLGEMEKEGGD---------------------------------CSPNVVTYTSVIQI 280
             +L  M K+G D                                  +P+V +Y+ +I  
Sbjct: 294 RNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMING 353

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C   M+ EA+ +   M +   APN VT ++LI G    G + +A+ L++++   G  + 
Sbjct: 354 LCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPAD 413

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              YSSL+  L +  ++ +A  L +K+   G++P+    ++++  LC  G++ +   +Y+
Sbjct: 414 VITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQ 473

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           D+   G+   +D  +++V++ GLC++    EA  L   M
Sbjct: 474 DLLIKGY--HLDVKMYNVMVNGLCKEGLFDEALSLVSKM 510



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 145/294 (49%), Gaps = 4/294 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ +  +M   +++PD   +N ++   C++G+M  A  ++  M    +  +I+TY S++
Sbjct: 257 EAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLM 316

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+    +   A  +F  M R G   ++ +YS +++G+C+   ++ A+ L  EM  +   
Sbjct: 317 DGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKS-- 374

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            +PN VTY S+I      G + +A  +++ M   G   + +T S+L+   C    +D+A 
Sbjct: 375 MAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAI 434

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            LI K+   G   +   Y+ LV  L +  RLK+A+ ++  +L  G   D    +VM+  L
Sbjct: 435 TLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGL 494

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           C  G   E   L   +E  G +   D+  +  L+  L   + + +A KL R M+
Sbjct: 495 CKEGLFDEALSLVSKMEDNGCIP--DAVTYETLVRALFENDKNDKAVKLLREMI 546



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 2/226 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A +V   M    + PD   Y+ +I   C+   +  A  L K M    + P+ +TY S+
Sbjct: 326 NKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSL 385

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G    GR+ DA  L   M   G  A+++ YS+LLD +C+   +++A+ L+ +++ +G 
Sbjct: 386 IDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQG- 444

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PN+ TYT ++   C  G +K+A  +   +   G   +    + ++ G C EG  DEA
Sbjct: 445 -IQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEA 503

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
             L+ K+   G +     Y +LV  L    +  +A KL  +M+  G
Sbjct: 504 LSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQG 549



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 161/368 (43%), Gaps = 44/368 (11%)

Query: 78  IRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM-MKVIF 136
           +R   + +L      + F+  R   +   +  PS I +V +A      ++ ++  ++ IF
Sbjct: 6   LRLIRYGSLSFPSTPNLFLLCRHSRLYYTQPLPSFIDNVDDAVSSFNHILHMRNPVQPIF 65

Query: 137 NLCE------KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
              +      K    + A+   ++M    ++PD   +N +I  FC  G +  A  ++  +
Sbjct: 66  EFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKI 125

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
             +  +PD +T  ++IKG C  G++ +A      +   G   + V+Y  L++G+C+ G  
Sbjct: 126 FKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGET 185

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK-------------------------- 284
             AL++L ++  +G    PNVV Y ++I   C                            
Sbjct: 186 RAALQVLRKI--DGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYT 243

Query: 285 ---------GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
                    G +KEA+G+ ++M      P+  T + L+ G C EG + +A  ++  ++  
Sbjct: 244 TLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQ 303

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G  S+   Y+SL+      K+  +A  +F+ M   GV PD  + S+MI  LC    V E 
Sbjct: 304 GVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEA 363

Query: 396 FCLYEDIE 403
             L++++ 
Sbjct: 364 VNLFKEMH 371



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 111/222 (50%), Gaps = 2/222 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V       G    V+   ++ N   K ++ +EA+ + ++M    + P+T+ YN++I    
Sbjct: 331 VFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLL 390

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A +L+  M       D+ITY S++   C   +++ A  L   +K  G   N+ 
Sbjct: 391 KYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIY 450

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L+DG+C+ G ++ A  +  ++  +G     +V  Y  ++   C +G+  EAL ++ 
Sbjct: 451 TYTILVDGLCKNGRLKDAQAVYQDLLIKGYHL--DVKMYNVMVNGLCKEGLFDEALSLVS 508

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +ME  GC P+ VT  TL++        D+A +L+ +++  GS
Sbjct: 509 KMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQGS 550



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 70/157 (44%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           D+V      G    V     + +   K    ++A+ ++ K+ +  ++P+   Y  ++   
Sbjct: 400 DLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGL 459

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ G +  A  + + + +   + D+  Y  M+ G C  G  ++A  L   M+ +GC  + 
Sbjct: 460 CKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDA 519

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
           V Y  L+  +      ++A++LL EM  +G     N+
Sbjct: 520 VTYETLVRALFENDKNDKAVKLLREMIVQGSAVGSNI 556


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 153/290 (52%), Gaps = 10/290 (3%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M +    P+ I YN ++   C  G M  A  L + M      PD++TY +++ GFC  G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L++A  +F    + G   ++V Y+AL++G C+   ++ A  +L  M  E  +  P+VVTY
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE--NLVPDVVTY 118

Query: 275 TSVIQIFCGKGMMKEA-LGILDRMEALGCAPNRVTISTLIKGFCVE-GNLDEAYQLIDKV 332
            S++   C  G + EA + I+D+    G +PN +T STLI G C E   + EA +L   V
Sbjct: 119 NSLVNGLCKNGRVDEARMLIVDK----GFSPNVITYSTLISGLCRELRGVSEALKLFGSV 174

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +  G       Y+ L+  L++  R+ EA +LFS ++  G++PD +  +V I  LC  G+V
Sbjct: 175 LKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRV 234

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +   + +D+++ G +  V S  H+ ++ GLC++    EA  L   M  K
Sbjct: 235 EDALLMLKDMDEKGCVPDVVS--HNAVINGLCKEKRVDEAEVLLSGMEAK 282



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 150/307 (48%), Gaps = 11/307 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+  R+ +   +I+D  + +       S     +I  LC + R  +EA+ +   +
Sbjct: 121 LVNGLCKNGRVDEARMLIVD--KGFSPNVITYST----LISGLCRELRGVSEALKLFGSV 174

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            +    P+   YN +I    ++  +  A EL  G+    L PD ITY   I G C AGR+
Sbjct: 175 LKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRV 234

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           EDA  + K M   GC  ++V+++A+++G+C+   ++ A  LL  ME +G  CSPN +++ 
Sbjct: 235 EDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG--CSPNAISFN 292

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC---VEGNLDEAYQLIDKV 332
           ++I   C  G  K+A+     M   G  P  VT + L+ G C    EG + EA  L D +
Sbjct: 293 TLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAM 352

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +  G V     YS+L+  L +  +L +A +L   M A G  P+    + +I  LC   +V
Sbjct: 353 IEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKV 412

Query: 393 LEGFCLY 399
            E   L+
Sbjct: 413 DEALELF 419



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 170/360 (47%), Gaps = 46/360 (12%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           + G V  V     + N   KA   +EA  +L++M   +L PD + YN+++   C+ G + 
Sbjct: 73  KRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVD 132

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFC------------------------------- 210
            A  L+   G     P++ITY ++I G C                               
Sbjct: 133 EARMLIVDKGF---SPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNIL 189

Query: 211 -----NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
                   R+ +A  LF  + +HG   + + Y+  +DG+C+ G +E AL +L +M+++G 
Sbjct: 190 IDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG- 248

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C P+VV++ +VI   C +  + EA  +L  MEA GC+PN ++ +TLI G C  G   +A
Sbjct: 249 -CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKA 307

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTK---RLKEAEKLFSKMLASGVKPDGLACSVM 382
                +++  G   +   Y+ LV  L + +   R+KEA  LF  M+  G  PD +  S +
Sbjct: 308 MTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSAL 367

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           I  L   G++ +   L   +E  G + +V +  ++ L+ GLC      EA +L   M++K
Sbjct: 368 IDGLGKAGKLDDARRLLGAMEAKGCIPNVYT--YNSLISGLCGLEKVDEALELFVAMVEK 425



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 5/241 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           NEA  +   + +  L PD I Y   I   C+ G +  A  ++K M      PD++++ ++
Sbjct: 200 NEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAV 259

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C   R+++A  L   M+  GC+ N ++++ L+ G CR G  ++A+    EM K G 
Sbjct: 260 INGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRG- 318

Query: 266 DCSPNVVTYTSVIQIFCG---KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
              P VVTY  ++   C    +G +KEA+ + D M   G  P+ VT S LI G    G L
Sbjct: 319 -VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKL 377

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           D+A +L+  + A G + +   Y+SL+  L   +++ EA +LF  M+  G  PD +    +
Sbjct: 378 DDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTI 437

Query: 383 I 383
           I
Sbjct: 438 I 438



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 152/308 (49%), Gaps = 9/308 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R++ +A  +  +M +    PD + YN ++  FC+ G++  A ++  G       P
Sbjct: 20  LCNGGRMS-DAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVP 78

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D++TY ++I GFC A +L++A  + + M       ++V Y++L++G+C+ G ++ A  L+
Sbjct: 79  DVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLI 138

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
            +        SPNV+TY+++I   C +   + EAL +   +   G  P   T + LI G 
Sbjct: 139 VDK-----GFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGL 193

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
             E  ++EA++L   +V  G       Y+  +  L +  R+++A  +   M   G  PD 
Sbjct: 194 LKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDV 253

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           ++ + +I  LC   +V E   L   +E  G   S ++   + L+ G CR     +A    
Sbjct: 254 VSHNAVINGLCKEKRVDEAEVLLSGMEAKG--CSPNAISFNTLICGQCRAGKWKKAMTTF 311

Query: 437 RFMLKKRI 444
           + MLK+ +
Sbjct: 312 KEMLKRGV 319



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 10/243 (4%)

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M++HG   N + Y+ALL G+C  G M  A  L   M K G   SP+VVTY +++  FC  
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAG--YSPDVVTYNTLLHGFCKV 58

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + EAL I D     G  P+ VT + LI GFC    LDEA +++ ++V+   V     Y
Sbjct: 59  GELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTY 118

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC--LGGQVLEGFCLYEDI 402
           +SLV  L +  R+ EA  L   ++  G  P+ +  S +I  LC  L G V E   L+  +
Sbjct: 119 NSLVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRG-VSEALKLFGSV 174

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            K G+   V +  +++L+ GL +++   EA +L   ++K  +          ++ L K+G
Sbjct: 175 LKQGYEPEVPT--YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAG 232

Query: 463 DEE 465
             E
Sbjct: 233 RVE 235



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 98/189 (51%), Gaps = 17/189 (8%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLAN--EAMWVLR 153
           N  C+  R+ +   +++  +EA   +GC  +     + FN  +C + R     +AM   +
Sbjct: 261 NGLCKEKRVDE-AEVLLSGMEA---KGCSPNA----ISFNTLICGQCRAGKWKKAMTTFK 312

Query: 154 KMPEFDLRPDTIIYNNVIRLFC---EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +M +  ++P  + YN ++   C   ++G +  A  L   M      PD++TY ++I G  
Sbjct: 313 EMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLG 372

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
            AG+L+DA  L   M+  GC  N+  Y++L+ G+C L  ++ ALEL   M ++G  C P+
Sbjct: 373 KAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKG--CVPD 430

Query: 271 VVTYTSVIQ 279
            +TY ++I 
Sbjct: 431 TITYGTIIS 439


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 168/363 (46%), Gaps = 43/363 (11%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           VL K  +  L+P  + +  +I    + G    A EL   M      PD  TY ++I G C
Sbjct: 32  VLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLC 91

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G    A GLFK M+  GC  N+V YS L+  +C+   +  AL++   M+ +  D SP 
Sbjct: 92  KIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAK--DISPT 149

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL-------- 322
           + TYTS+IQ  C     KEA  +L+ M +L   PN VT + L+  FC EG +        
Sbjct: 150 IFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLK 209

Query: 323 ---------------------------DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
                                       EA +L D ++  G       YS L+    + K
Sbjct: 210 TMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAK 269

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R+ EA++LF++M+  G  P+ ++ + +I  LC  G++ E   L++++   G L ++ +  
Sbjct: 270 RIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYT-- 327

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD----EELITNLP 471
           +++LL G C++ +  +A +L R M    +       + +V  + KSG+     EL + L 
Sbjct: 328 YAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELF 387

Query: 472 KIG 474
            IG
Sbjct: 388 VIG 390



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 160/302 (52%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC  +R   EA  +L +M   ++ P+ + +N ++  FC++G ++AA+ ++K M  +
Sbjct: 156 LIQGLCNFSRW-KEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEM 214

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD++TY S++ G+     + +A  LF VM   GC  ++ +YS L++G C+   ++ A
Sbjct: 215 GVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEA 274

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  EM  +G   +PN V+Y ++I   C  G ++EA  +   M   G  PN  T + L+
Sbjct: 275 KQLFNEMIHQGS--TPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILL 332

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC +G L +A++L   + +     +   Y+ LV  + ++  LK+A +LFS++   G++
Sbjct: 333 DGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQ 392

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    + +I  LC  G + E    + ++E  G     D   ++V++ G  +      A 
Sbjct: 393 PNVQIYTTIINGLCKEGLLDEALEAFRNMEDDG--CPPDEFSYNVIIRGFLQHKDESRAV 450

Query: 434 KL 435
            L
Sbjct: 451 HL 452



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 182/383 (47%), Gaps = 15/383 (3%)

Query: 59  STCVIEVLHRCFPSQSQMGIRFFIWA-----ALQSSYRHSSFMYNRACEMSRIKQNPSII 113
           +TC + +L  CF    ++ + F + A      LQ +    + + N   ++ +  Q   + 
Sbjct: 9   NTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELF 68

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
            D+V      GC         I N LC+    A  A  + +KM E   + + + Y+ +I 
Sbjct: 69  DDMV----ARGCQPDDYTYTTIINGLCKIGETA-LAAGLFKKMEEAGCQLNVVTYSTLIH 123

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C+   +  A ++   M   D+ P I TY S+I+G CN  R ++A  L   M       
Sbjct: 124 SLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMP 183

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N+V ++ L+D  C+ G +  A  +L  M + G    P+VVTY S++  +     + EA  
Sbjct: 184 NVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMG--VEPDVVTYNSLMYGYSMWTEVVEARK 241

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D M   GC P+  + S LI G+C    +DEA QL ++++  GS  +   Y++L+  L 
Sbjct: 242 LFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLC 301

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  RL+EA+ LF  M  +G  P+    ++++   C  G + + F L+  ++      ++ 
Sbjct: 302 QLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNL- 360

Query: 413 SDIHSVLLLGLCRKNHSVEAAKL 435
             ++++L+  +C+  +  +A +L
Sbjct: 361 -VMYNILVNAMCKSGNLKDAREL 382



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 157/319 (49%), Gaps = 4/319 (1%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +E GC ++V     + +   K R  NEA+ +   M   D+ P    Y ++I+  C     
Sbjct: 107 EEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRW 166

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L+  M  +++ P+++T+  ++  FC  G++  A G+ K M   G   ++V Y++L
Sbjct: 167 KEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSL 226

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G      +  A +L   M  +G  C P+V +Y+ +I  +C    + EA  + + M   
Sbjct: 227 MYGYSMWTEVVEARKLFDVMITKG--CKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQ 284

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN V+ +TLI G C  G L EA  L   +   G++ +   Y+ L+    +   L +A
Sbjct: 285 GSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKA 344

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +LF  M ++ +KP+ +  ++++  +C  G + +   L+ ++  IG   +V   I++ ++
Sbjct: 345 FRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNV--QIYTTII 402

Query: 421 LGLCRKNHSVEAAKLARFM 439
            GLC++    EA +  R M
Sbjct: 403 NGLCKEGLLDEALEAFRNM 421



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 143/285 (50%), Gaps = 8/285 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFD 159
           C  SR K+  S +++ + +      VV+  ++   F  C++ + LA E   VL+ M E  
Sbjct: 161 CNFSRWKE-ASALLNEMTSLNIMPNVVTFNVLVDTF--CKEGKVLAAEG--VLKTMTEMG 215

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           + PD + YN+++  +    +++ A +L   M      PD+ +Y  +I G+C A R+++A 
Sbjct: 216 VEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAK 275

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF  M   G   N V+Y+ L+ G+C+LG +  A +L   M   G    PN+ TY  ++ 
Sbjct: 276 QLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGN--LPNLYTYAILLD 333

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            FC +G + +A  +   M++    PN V  + L+   C  GNL +A +L  ++   G   
Sbjct: 334 GFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQP 393

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           +   Y++++  L +   L EA + F  M   G  PD  + +V+IR
Sbjct: 394 NVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIR 438



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 8/238 (3%)

Query: 111 SIIIDVVEAYK------EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           S+  +VVEA K       +GC   V    ++ N   KA+  +EA  +  +M      P+ 
Sbjct: 231 SMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNN 290

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + YN +I   C+ G +  A +L K M      P++ TY  ++ GFC  G L  A  LF+ 
Sbjct: 291 VSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRA 350

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+      NLV Y+ L++ +C+ G+++ A EL  E+   G    PNV  YT++I   C +
Sbjct: 351 MQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIG--LQPNVQIYTTIINGLCKE 408

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
           G++ EAL     ME  GC P+  + + +I+GF    +   A  LI ++   G ++  G
Sbjct: 409 GLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAG 466



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 141/307 (45%), Gaps = 23/307 (7%)

Query: 88  SSYRHSSFMYNRACEMSRIKQNPSIIID--VVEAYKEEGCVVSVK-MMKVIFNL------ 138
           S ++ +S + N   EM+ +   P+++    +V+ + +EG V++ + ++K +  +      
Sbjct: 164 SRWKEASALLN---EMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDV 220

Query: 139 -CEKARLANEAMW--VLRKMPEFDL------RPDTIIYNNVIRLFCEKGDMIAADELMKG 189
               + +   +MW  V+     FD+      +PD   Y+ +I  +C+   +  A +L   
Sbjct: 221 VTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNE 280

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M      P+ ++Y ++I G C  GRL +A  LFK M  +G   NL  Y+ LLDG C+ G 
Sbjct: 281 MIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGY 340

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           + +A  L   M+       PN+V Y  ++   C  G +K+A  +   +  +G  PN    
Sbjct: 341 LGKAFRLFRAMQSTY--LKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIY 398

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           +T+I G C EG LDEA +    +   G       Y+ ++   ++ K    A  L  +M  
Sbjct: 399 TTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRD 458

Query: 370 SGVKPDG 376
            G   D 
Sbjct: 459 RGFITDA 465



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 2/195 (1%)

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SPN  T   +I  FC    +     +L +   LG  P  VT +TLI G    G   +A +
Sbjct: 7   SPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVE 66

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L D +VA G       Y++++  L +      A  LF KM  +G + + +  S +I  LC
Sbjct: 67  LFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLC 126

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
              +V E   ++  ++      ++ +  ++ L+ GLC  +   EA+ L   M    I   
Sbjct: 127 KYRRVNEALDIFSYMKAKDISPTIFT--YTSLIQGLCNFSRWKEASALLNEMTSLNIMPN 184

Query: 448 GPYVDKIVEHLKKSG 462
               + +V+   K G
Sbjct: 185 VVTFNVLVDTFCKEG 199



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           ME  G +PN  T++ LI  FC    +D  + ++ K +  G   +   +++L+  L +  +
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
             +A +LF  M+A G +PD    + +I  LC  G+      L++ +E+ G    ++   +
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAG--CQLNVVTY 118

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           S L+  LC+     EA  +  +M  K I
Sbjct: 119 STLIHSLCKYRRVNEALDIFSYMKAKDI 146


>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61400-like [Glycine max]
          Length = 498

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 165/311 (53%), Gaps = 15/311 (4%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M +FD+ P+   YN++I  +C+ GD++ A  L   M    ++ D++TY  +IKG C+  R
Sbjct: 161 MAKFDVVPNGHAYNSLIHGYCKAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICR 220

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           LE+A GL + M      AN V ++ ++DG C++G ME+A+E+  +M +E     PNV+T+
Sbjct: 221 LEEAMGLMEKMDEVEVFANSVXFNVVIDGCCKIGDMEKAIEVCSQMTEE--XIEPNVITF 278

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + +I  FC KG ++ A+G+   M   G  P+ VT + LI G C  GN  EA++L  +++ 
Sbjct: 279 SILIDGFCNKGNVRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLD 338

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLF----------SKMLASGVKPDGLACSVMIR 384
            G   +    S ++  L++  R  +A K+F           KM +    P+ +  +++I+
Sbjct: 339 AGLSPNMFTVSCVIDGLLKDGRTNDAIKMFLEKTGAGYPGDKMDSRFCSPNSMMYAILIQ 398

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            LC  G + +    + +++  GF    D  ++  +L    +  H ++   L   M+K  +
Sbjct: 399 GLCEDGXIFKATKFFAEMKWNGF--KPDMLVYVTMLQAHFQSKHMIDVMMLHADMVKMGV 456

Query: 445 WLQGPYVDKIV 455
            +Q  ++ +++
Sbjct: 457 -IQNTFIYRVL 466



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 132/261 (50%), Gaps = 13/261 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  RL  EAM ++ KM E ++  +++ +N VI   C+ GDM  A E+   M   
Sbjct: 211 LIKGLCDICRL-EEAMGLMEKMDEVEVFANSVXFNVVIDGCCKIGDMEKAIEVCSQMTEE 269

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P++IT+  +I GFCN G +  A GL+  M   G   ++V Y+AL+DG C++G+ + A
Sbjct: 270 XIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEA 329

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL----------DRMEALGCA 303
             L  EM   G   SPN+ T + VI      G   +A+ +           D+M++  C+
Sbjct: 330 FRLHKEMLDAG--LSPNMFTVSCVIDGLLKDGRTNDAIKMFLEKTGAGYPGDKMDSRFCS 387

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN +  + LI+G C +G + +A +   ++   G       Y +++    ++K + +   L
Sbjct: 388 PNSMMYAILIQGLCEDGXIFKATKFFAEMKWNGFKPDMLVYVTMLQAHFQSKHMIDVMML 447

Query: 364 FSKMLASGVKPDGLACSVMIR 384
            + M+  GV  +     V+ R
Sbjct: 448 HADMVKMGVIQNTFIYRVLSR 468



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 145/353 (41%), Gaps = 51/353 (14%)

Query: 147 EAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +++W V   M      P  I Y  ++   C +GD   A ++   M    + P+++ Y   
Sbjct: 21  DSLWEVYVDMMSRRFSPTVITYGILMNCCCAQGDFSNAQKVFDEMLERGIEPNVVIY--- 77

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEG 264
                  G++ +A G+F  M+  G    NL  Y  L+DG   +G ++R   L  +M K G
Sbjct: 78  -------GQMGEAEGVFGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFYLYCDMLKPG 130

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               P+VVT+ ++I +    G +K A      M      PN    ++LI G+C  G+L E
Sbjct: 131 --LYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYCKAGDLLE 188

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF-------------------- 364
           A  L  ++   G  S    Y+ L+  L    RL+EA  L                     
Sbjct: 189 AMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSVXFNVVID 248

Query: 365 ---------------SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
                          S+M    ++P+ +  S++I   C  G V     LY ++   G + 
Sbjct: 249 GCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIVP 308

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            V +  ++ L+ G C+  ++ EA +L + ML   +      V  +++ L K G
Sbjct: 309 DVVT--YTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDG 359



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 30/254 (11%)

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK------------- 284
           +ALL G+ +    +   E+  +M       SP V+TY  ++   C +             
Sbjct: 8   NALLHGLVKTQMFDSLWEVYVDMMSR--RFSPTVITYGILMNCCCAQGDFSNAQKVFDEM 65

Query: 285 ------------GMMKEALGILDRMEALG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
                       G M EA G+  RM   G   PN  T  TL+ G+ + G++   + L   
Sbjct: 66  LERGIEPNVVIYGQMGEAEGVFGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFYLYCD 125

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           ++  G       +++L+  L +   LK A   F+ M    V P+G A + +I   C  G 
Sbjct: 126 MLKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYCKAGD 185

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV 451
           +LE   L  ++E+ G  S V +  +++L+ GLC      EA  L   M +  ++      
Sbjct: 186 LLEAMWLRLEMERCGIFSDVVT--YNILIKGLCDICRLEEAMGLMEKMDEVEVFANSVXF 243

Query: 452 DKIVEHLKKSGDEE 465
           + +++   K GD E
Sbjct: 244 NVVIDGCCKIGDME 257


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 132/259 (50%), Gaps = 2/259 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A   LR+M EF L PD +IY  VI  FC  G M+ A  +   M      PD++TY ++
Sbjct: 316 DHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTL 375

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + G C   RL DA  L   MK  G   +L  ++ L+ G CR G++E+AL+    +  +  
Sbjct: 376 LNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQ-- 433

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P++VTY ++I   C +G + +A  + D M +    PN VT S LI   C +G +D A
Sbjct: 434 RLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNA 493

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           +  +D++V  G V +   Y+S++    R+  + + ++   KM    V PD +  + +I  
Sbjct: 494 FAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHG 553

Query: 386 LCLGGQVLEGFCLYEDIEK 404
               G++ E F L + +E 
Sbjct: 554 YVKEGKMHEAFNLLKIMEN 572



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 146/284 (51%), Gaps = 4/284 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + +N ++      GD+ AA  L+  M    + P ++TY S++KG    GR + A  +
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREV 251

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F+ M   G A ++ +++ L+ G CR G +E AL    EM   G   +P+VV+++ +I +F
Sbjct: 252 FRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMR--GRRVTPDVVSFSCLIGLF 309

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
             +G M  A   L  M   G  P+ V  + +I GFC  G + EA ++ D++VA G +   
Sbjct: 310 TRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDV 369

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++L+  L + +RL +AE+L ++M   GV PD    + +I   C  G + +    ++ 
Sbjct: 370 VTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDT 429

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           I        + +  ++ L+ G+CR+    +A +L   M  + I+
Sbjct: 430 ISDQRLRPDIVT--YNTLIDGMCRQGDLGKANELWDDMHSREIF 471



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 142/286 (49%), Gaps = 6/286 (2%)

Query: 124 GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC+  V     + N LC++ RL+ +A  +L +M E  + PD   +  +I  +C  G++  
Sbjct: 364 GCLPDVVTYNTLLNGLCKERRLS-DAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEK 422

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +    +    L PDI+TY ++I G C  G L  A  L+  M       N V YS L+D
Sbjct: 423 ALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILID 482

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
             C  G ++ A   L EM  +G    PN++TY S+I+ +C  G + +    L +M     
Sbjct: 483 SHCEKGQVDNAFAFLDEMVNKG--IVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKV 540

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG-CYSSLVVELVRTKRLKEAE 361
            P+ +T +TLI G+  EG + EA+ L+ K++   +V      Y+ ++        ++EA+
Sbjct: 541 MPDLITYNTLIHGYVKEGKMHEAFNLL-KIMENENVQPDAVTYNMIISGFSVHGNMQEAD 599

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
            ++ KM A G++PD      MI    + G   + F L++++ + G 
Sbjct: 600 WVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGL 645



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 114/216 (52%), Gaps = 2/216 (0%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           LRPD + YN +I   C +GD+  A+EL   M   +++P+ +TY  +I   C  G++++A 
Sbjct: 435 LRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAF 494

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
                M   G   N++ Y++++ G CR G++ +  + L +M  +     P+++TY ++I 
Sbjct: 495 AFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHD--KVMPDLITYNTLIH 552

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +  +G M EA  +L  ME     P+ VT + +I GF V GN+ EA  +  K+ A G   
Sbjct: 553 GYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEP 612

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
               Y S++   V     K++ +L  +ML  G+ PD
Sbjct: 613 DRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 3/262 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C    L  EA+   ++M    + PD + ++ +I LF  +G+M  A E ++ M   
Sbjct: 270 LIGGFCRAGEL-EEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREF 328

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD + Y  +I GFC AG + +A  +   M   GC  ++V Y+ LL+G+C+   +  A
Sbjct: 329 GLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDA 388

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ELL EM++ G    P++ T+T++I  +C  G +++AL   D +      P+ VT +TLI
Sbjct: 389 EELLNEMKERG--VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLI 446

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C +G+L +A +L D + +     +   YS L+       ++  A     +M+  G+ 
Sbjct: 447 DGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIV 506

Query: 374 PDGLACSVMIRELCLGGQVLEG 395
           P+ +  + +I+  C  G V +G
Sbjct: 507 PNIMTYNSIIKGYCRSGNVSKG 528



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 3/167 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           CEK ++ N A   L +M    + P+ + YN++I+ +C  G++    + +  M    + PD
Sbjct: 485 CEKGQVDN-AFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPD 543

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           +ITY ++I G+   G++ +A  L K+M+      + V Y+ ++ G    G+M+ A  +  
Sbjct: 544 LITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYK 603

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           +M   G    P+  TY S+I      G  K++  + D M   G AP+
Sbjct: 604 KMGARG--IEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 158/308 (51%), Gaps = 4/308 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V M   I +   K +L NEA  +  +M    + PD + Y+ +I  FC  G +  A +L 
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLF 283

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M L ++ PD+ T+  ++  FC  G++++   +F +M + G   N V Y++L+DG C +
Sbjct: 284 NKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLV 343

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             + +A  +   M +  G  +P++ +Y+ +I  FC      EA+ +   M      P+ V
Sbjct: 344 KEVNKAKSIFNTMAQ--GGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVV 401

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S+LI G    G +  A QL+D++   G   +   Y+S++  L +T ++ +A  L +K 
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKF 461

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G +PD    S++I+ LC  G++ +   ++ED+   G+  ++D   +++++ G C + 
Sbjct: 462 KDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGY--NLDVYAYTIMIQGFCVEG 519

Query: 428 HSVEAAKL 435
              EA  L
Sbjct: 520 LFNEALAL 527



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 160/322 (49%), Gaps = 4/322 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K++  +  +++ +KM    ++P+ +  N +I  FC+ G +  A  +   +  +   PD I
Sbjct: 97  KSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTI 156

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T+ ++ KG C  G+++ A      +   G   + ++Y  L+ G+C++G    AL+LL  +
Sbjct: 157 TFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRV 216

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           +  G    PNVV Y ++I   C   ++ EA  +   M + G +P+ VT S LI GFC+ G
Sbjct: 217 D--GNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILG 274

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            L +A  L +K++          ++ LV    +  ++KE + +F  M+  G+KP+ +  +
Sbjct: 275 KLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYN 334

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            ++   CL  +V +   ++  + + G    + S  +S+++ G C+     EA  L + M 
Sbjct: 335 SLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQS--YSIMINGFCKIKKFDEAMNLFKEMH 392

Query: 441 KKRIWLQGPYVDKIVEHLKKSG 462
           +K I         +++ L KSG
Sbjct: 393 RKNIIPDVVTYSSLIDGLSKSG 414



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 181/410 (44%), Gaps = 60/410 (14%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQM---GIR--FFIWAALQSSYRHSSFMYN 98
           N ++  +      +DS C +++++  F   S+M   GI      ++AL S +        
Sbjct: 219 NLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGF-------- 270

Query: 99  RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPE 157
             C + ++K      ID+      E     V    ++ N  C+  ++  E   V   M +
Sbjct: 271 --CILGKLKD----AIDLFNKMILENIKPDVYTFNILVNAFCKDGKMK-EGKTVFDMMMK 323

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
             ++P+ + YN+++  +C   ++  A  +   M    + PDI +Y  MI GFC   + ++
Sbjct: 324 QGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDE 383

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  LFK M R     ++V YS+L+DG+ + G +  AL+L+ +M   G    PN+ TY S+
Sbjct: 384 AMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG--VPPNICTYNSI 441

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +   C    + +A+ +L + +  G  P+  T S LIKG C  G                 
Sbjct: 442 LDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSG----------------- 484

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
                             +L++A K+F  +L  G   D  A ++MI+  C+ G   E   
Sbjct: 485 ------------------KLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALA 526

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
           L   +E  G +   D+  + +++L L +K+ +  A KL R M+ + + L 
Sbjct: 527 LLSKMEDNGCIP--DAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 125/284 (44%), Gaps = 43/284 (15%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + I+Y S    F +   ++DA  LF  + R         ++ +L  + +       L L 
Sbjct: 49  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLS 108

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +ME  G    PN+V    +I  FC  G++  A  +  ++  +G  P+ +T +TL KG C
Sbjct: 109 QKMEFRG--IKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLC 166

Query: 318 VEGNLDEAYQLIDKVVA---------GGSVSSGGC------------------------- 343
           ++G + +A+   DKVVA          G++  G C                         
Sbjct: 167 LKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVV 226

Query: 344 -YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y++++  + + K + EA  LFS+M++ G+ PD +  S +I   C+ G++ +   L+  +
Sbjct: 227 MYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKM 286

Query: 403 EKIGFLSSVDSDIHS--VLLLGLCRKNHSVEAAKLARFMLKKRI 444
                L ++  D+++  +L+   C+     E   +   M+K+ I
Sbjct: 287 ----ILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGI 326



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N ++ S+    F    ++D+A  L ++++   +      ++ ++  LV++K       L 
Sbjct: 49  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLS 108

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            KM   G+KP+ + C+++I   C  G +   F ++  I K+G++   D+   + L  GLC
Sbjct: 109 QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVP--DTITFTTLSKGLC 166

Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
            K    +A     F+   ++   G + D+I
Sbjct: 167 LKGQIQQA-----FLFHDKVVALGFHFDQI 191


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 156/311 (50%), Gaps = 6/311 (1%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL-MKGMGLI 193
           I  LC K R   +A  VL +M    L+P+   +  +I   C+ G    A  L +K +   
Sbjct: 150 IDGLC-KRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSS 208

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P++ TY  MI G+C  G+L  A  L   M   G   N   Y+ L+ G C+ GS +RA
Sbjct: 209 SYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRA 268

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL+ +M++EG    PN+ TY +VI  FC KG ++EA  +L    + G   +++T + LI
Sbjct: 269 FELMNKMKQEG--FLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILI 326

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C +G++  A  L D++V  G       Y+SL+    + ++++E++K F K L  G+ 
Sbjct: 327 TEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLL 386

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P     + MI   C  G+      ++E + + G  +  DS  +  L+ GLC+++   EA 
Sbjct: 387 PTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFA--DSITYGALISGLCKESRLEEAK 444

Query: 434 KLARFMLKKRI 444
            L   ML KR+
Sbjct: 445 ALYEGMLDKRL 455



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 169/346 (48%), Gaps = 12/346 (3%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
           Y H++ + +  C++   ++   + + ++++   +  V +  +M  I   C + +LA   M
Sbjct: 179 YTHTTLI-DGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVM--IGGYCREGKLARAEM 235

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            ++R M E  L+P+T  Y  +I   C+ G    A ELM  M      P+I TY ++I GF
Sbjct: 236 LLVR-MVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGF 294

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C  G++++A  + ++    G   + + Y+ L+   C+ G +  AL+L   M + G  C P
Sbjct: 295 CKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENG--CCP 352

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           ++  YTS+I  +C +  M+E+    D+   +G  P + T +++I G+C  G    A ++ 
Sbjct: 353 DIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVF 412

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           +++V  G  +    Y +L+  L +  RL+EA+ L+  ML   + P  +    +  E C  
Sbjct: 413 ERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRR 472

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +      + + ++K   + +VD  +  +  LG       V+AA L
Sbjct: 473 EKTSIAVSVLDRLDKRQQVHTVDVVVRKLSALG------DVDAASL 512



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 139/288 (48%), Gaps = 9/288 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AMW       +    D      V+R  CEKG      E  + M      P+++ Y + I 
Sbjct: 98  AMW------RYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWID 151

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C    ++ A  + + M   G   N+  ++ L+DG+C++G  ERA  L  ++ K     
Sbjct: 152 GLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIK-SSSY 210

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PNV TYT +I  +C +G +  A  +L RM   G  PN  T +TLI G C  G+ D A++
Sbjct: 211 KPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFE 270

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L++K+   G + +   Y++++    +  +++EA K+     + G+K D +  +++I E C
Sbjct: 271 LMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHC 330

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             G +     L++ + + G    +++  ++ L+   C++    E+ K 
Sbjct: 331 KQGHITYALDLFDRMVENGCCPDIEA--YTSLISTYCQQRQMEESQKF 376



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 13/306 (4%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P+   Y  +I  +C +G +  A+ L+  M    L P+  TY ++I G C  G  + A  
Sbjct: 211 KPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFE 270

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   MK+ G   N+  Y+A++DG C+ G ++ A ++L     +G     + +TYT +I  
Sbjct: 271 LMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQG--LKFDKITYTILITE 328

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G +  AL + DRM   GC P+    ++LI  +C +  ++E+ +  DK +  G + +
Sbjct: 329 HCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPT 388

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+S++    +  R   A ++F +M+ +G   D +    +I  LC   ++ E   LYE
Sbjct: 389 KQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYE 448

Query: 401 DIEKIGFLSS--VDSDIHSV-LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457
                G L    V  ++  V L    CR+  +  A  +   + K++   Q   VD +V  
Sbjct: 449 -----GMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQ---QVHTVDVVVRK 500

Query: 458 LKKSGD 463
           L   GD
Sbjct: 501 LSALGD 506



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 137/295 (46%), Gaps = 6/295 (2%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N V+R+  E G  + A ++  GM    + P    + +++   C  G++E+   L   M R
Sbjct: 42  NWVLRVGLETGSFVYARKVFDGMTRAGVSPMNRGFGALVVVCCREGKVEEVDALLAAMWR 101

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
           +G + +    + ++  +C  G  +   E    M + G    PNVV YT+ I   C +  +
Sbjct: 102 YGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETG--TPPNVVNYTAWIDGLCKRRYV 159

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSS 346
           K+A  +L+ M   G  PN  T +TLI G C  G  + A++L  K++   S       Y+ 
Sbjct: 160 KQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTV 219

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++    R  +L  AE L  +M+  G+KP+    + +I   C GG     F L   +++ G
Sbjct: 220 MIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEG 279

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG-PYVDKIVEHLKK 460
           FL ++ +  ++ ++ G C+K    EA K+ R    + +      Y   I EH K+
Sbjct: 280 FLPNIYT--YNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQ 332



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 115/247 (46%), Gaps = 14/247 (5%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           M+  F  AGRL +A  +   M+ HG    +   + +L      GS   A ++   M + G
Sbjct: 9   MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 68

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
              SP    + +++ + C +G ++E   +L  M   G + +  T + +++  C +G   +
Sbjct: 69  --VSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKD 126

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
             +   +++  G+  +   Y++ +  L + + +K+A  +  +M+  G+KP+    + +I 
Sbjct: 127 VSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLID 186

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH--SVLLLGLCRKNHSVEAAKLARF-MLK 441
            LC  G     F L+  + K    SS   ++H  +V++ G CR+       KLAR  ML 
Sbjct: 187 GLCKIGWTERAFRLFLKLIKS---SSYKPNVHTYTVMIGGYCRE------GKLARAEMLL 237

Query: 442 KRIWLQG 448
            R+  QG
Sbjct: 238 VRMVEQG 244


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 157/293 (53%), Gaps = 6/293 (2%)

Query: 143 RLA-NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           RLA + +  ++R++ E    P+   +N VI   C++G++  A  L   M  +   PD++T
Sbjct: 166 RLARDRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVT 225

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           + S+I G+   G L++   L + M+R GC A++V Y+AL++  C+ G ME A      M+
Sbjct: 226 FNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK 285

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           +EG     NVVT+++ +  FC +G+++EA+ +  +M   G A N  T + LI G C  G 
Sbjct: 286 REG--VMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           LD+A  L+D++V  G   +   Y+ LV  L + +++ EAE +   M  +GV+ + L  + 
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           +I    +     +   L  +++  G    +D  ++  L+ GLC   H ++ AK
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGL--ELDISLYGALIQGLCNV-HKLDEAK 453



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 146/309 (47%), Gaps = 38/309 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC++  LA EA  +  +M E    PD + +N++I  + + G++   ++L++ M   
Sbjct: 194 VIDFLCKEGELA-EARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRS 252

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA----------------- 236
               D++TY ++I  FC  GR+E A G F  MKR G  AN+V                  
Sbjct: 253 GCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREA 312

Query: 237 ------------------YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
                             Y+ L+DG C+ G ++ A+ LL EM ++G     NVVTYT ++
Sbjct: 313 MKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG--VPLNVVTYTVLV 370

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C +  + EA  +L  ME  G   N +  +TLI G  +  N ++A  L+ ++   G  
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y +L+  L    +L EA+ L +KM  SG++P+ +  + M+      G+V E   +
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 399 YEDIEKIGF 407
            + I   GF
Sbjct: 491 LQKILDSGF 499



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 162/357 (45%), Gaps = 31/357 (8%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKM 155
           Y +  E+  ++Q       +VE  +  GC   V     + N  C+  R+   A      M
Sbjct: 233 YGKCGELDEVEQ-------LVEEMRRSGCKADVVTYNALINCFCKFGRMET-AYGYFAAM 284

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               +  + + ++  +  FC++G +  A +L   M +  +  +  TY  +I G C AGRL
Sbjct: 285 KREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRL 344

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           +DA  L   M R G   N+V Y+ L+DG+C+   +  A ++L  MEK G     N + YT
Sbjct: 345 DDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAG--VRANELLYT 402

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           ++I         ++ALG+L  M+  G   +      LI+G C    LDEA  L+ K+   
Sbjct: 403 TLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES 462

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   Y++++    ++ ++ EA  +  K+L SG +P+              G + E 
Sbjct: 463 GLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPN-------------NGCLNEA 509

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452
             L+ ++   G   S+D  +++ LL G  ++ +  +A     F LK ++   G  +D
Sbjct: 510 VQLFNEMVHKGM--SLDKVVYTALLDGYLKQGNLHDA-----FALKAKMIDSGLQLD 559



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 126/270 (46%), Gaps = 25/270 (9%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C+  RL ++A+ +L +M    +  + + Y  ++   C++  +  A+++++ M    +  +
Sbjct: 339 CKAGRL-DDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRAN 397

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            + Y ++I G       E A GL   MK  G   ++  Y AL+ G+C +  ++ A  LL 
Sbjct: 398 ELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLT 457

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN------------- 305
           +M++ G    PN + YT+++      G + EA+ +L ++   G  PN             
Sbjct: 458 KMDESG--LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNE 515

Query: 306 ---------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
                    +V  + L+ G+  +GNL +A+ L  K++  G      CY+  +        
Sbjct: 516 MVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNM 575

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           + EA ++FS+M+  G+ PD    + +I ++
Sbjct: 576 MPEAREVFSEMIGHGIAPDRAVYNCLITQI 605



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 23/231 (9%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM-KVIFNLCEKARLA 145
           ++  R +  +Y        + +N    + ++   K +G  + + +   +I  LC   +L 
Sbjct: 391 KAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKL- 449

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA  +L KM E  L P+ IIY  ++    + G +                P+ I  +  
Sbjct: 450 DEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKV----------------PEAIAMLQK 493

Query: 206 I--KGF-CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
           I   GF  N G L +A  LF  M   G + + V Y+ALLDG  + G++  A  L  +M  
Sbjct: 494 ILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMID 553

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            G     ++  YT  I  FC   MM EA  +   M   G AP+R   + LI
Sbjct: 554 SG--LQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 602


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 183/381 (48%), Gaps = 37/381 (9%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +++ A+ + G V   K  +V+  + EKARL +EA+ + R M +  L PD   Y+ +I  F
Sbjct: 229 NMISAHCKVGNVKDAK--RVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGF 286

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C +     A  ++  M  + L P+ ITY ++I GF   G +E A  +   M   G  ANL
Sbjct: 287 CMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANL 346

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEG-------------GDC-------------- 267
           + ++ LL+G+C+ G ME+ALE++ EM ++G             G C              
Sbjct: 347 IIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDE 406

Query: 268 ------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
                 +P V+TY+ +I   C  G ++    IL  M   G  PN V  +TL+     EG 
Sbjct: 407 MKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGR 466

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           ++E+  +++++   G +    CY+SL++   + KR++EA     +ML   ++P+      
Sbjct: 467 VEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGA 526

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            I      G++      + ++   G L +V   I++ L+ G C++ +  EA  + RF+L 
Sbjct: 527 FIDGYSKAGEMEIADRYFNEMLSCGVLPNV--GIYTALIEGHCKEGNVTEAFSVFRFILS 584

Query: 442 KRIWLQGPYVDKIVEHLKKSG 462
           +R+         ++  L ++G
Sbjct: 585 RRVLQDVQTYSVLIHGLSRNG 605



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 175/381 (45%), Gaps = 23/381 (6%)

Query: 99  RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM-----------------KVIFNLCEK 141
           R   M+ +K N  +   ++ A+ +EG V   +M+                  +I   C K
Sbjct: 440 REMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFC-K 498

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           A+   EA   L +M E  LRP+   Y   I  + + G+M  AD     M    + P++  
Sbjct: 499 AKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGI 558

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y ++I+G C  G + +A  +F+ +       ++  YS L+ G+ R G M  A  +  E++
Sbjct: 559 YTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQ 618

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           ++G    PN  TY S+I   C +G + +A  +L+ M   G  P+ VT + LI G C  G 
Sbjct: 619 EKG--LLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGE 676

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           ++ A  L D +   G   +   Y+++V    ++K    A +L  +ML  GV PD    +V
Sbjct: 677 IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNV 736

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           ++   C   +  +   L++++ + GF S+V     + L+ G C+     EA  L   M++
Sbjct: 737 ILNFCCKEEKFEKALDLFQEMLEKGFASTVS---FNTLIEGYCKSGKLQEANHLLEEMIE 793

Query: 442 KRIWLQGPYVDKIVEHLKKSG 462
           K+          +++H  K+G
Sbjct: 794 KQFIPNHVTYTSLIDHNCKAG 814



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 152/297 (51%), Gaps = 5/297 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA  +  ++ E  L P+   YN++I   C++G++  A +L++ M +  + PDI+TY  +
Sbjct: 608 HEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNIL 667

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C AG +E A  LF  ++  G   N V Y+A++DG C+  +   A +LL EM   G 
Sbjct: 668 IDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG- 726

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+   Y  ++   C +   ++AL +   M   G A + V+ +TLI+G+C  G L EA
Sbjct: 727 -VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGKLQEA 784

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L+++++    + +   Y+SL+    +   + EA++L+ +M    V P     + ++  
Sbjct: 785 NHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHG 844

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               G + E   L+E++   G     D   + V++   CR+ + +EA KL   +L K
Sbjct: 845 YHNIGNMSEVSALFEEMVAKGI--EPDKMTYYVMIDAYCREGNVMEACKLKDEILVK 899



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 163/362 (45%), Gaps = 22/362 (6%)

Query: 65  VLHRCFPSQSQMGIRFFIWAALQS-SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE 123
           VL        +M   F I++ LQ      ++F YN     S  + N    +D      EE
Sbjct: 596 VLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGN----VDKASQLLEE 651

Query: 124 GCVVSVKMMKVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
            C+  +    V +N     LC KA     A  +   +    L P+ + Y  ++  +C+  
Sbjct: 652 MCIKGINPDIVTYNILIDGLC-KAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSK 710

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
           +  AA +L++ M L  + PD   Y  ++   C   + E A  LF+ M   G A+  V+++
Sbjct: 711 NPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFAST-VSFN 769

Query: 239 ALLDGICRLGSMERALELLGEM-EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
            L++G C+ G ++ A  LL EM EK+     PN VTYTS+I   C  GMM EA  +   M
Sbjct: 770 TLIEGYCKSGKLQEANHLLEEMIEKQ---FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEM 826

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           +     P   T ++L+ G+   GN+ E   L +++VA G       Y  ++    R   +
Sbjct: 827 QERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNV 886

Query: 358 KEAEKLFSKMLASGVKPD-----GL-ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            EA KL  ++L  G+        GL  CSV+ R   + G + E   +   + K G++S+ 
Sbjct: 887 MEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNT 946

Query: 412 DS 413
            S
Sbjct: 947 TS 948



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 144/285 (50%), Gaps = 34/285 (11%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL------MKGMGLIDLYPDII 200
           EA+ V      F+ RP  +  N+++      GD++  +++        GM    + PD+ 
Sbjct: 172 EAVNVFLGPKNFEFRPSLLSCNSLL------GDLLKGNKVELFWKVFDGMCAHKVLPDVY 225

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY +MI   C  G ++DA    +V+   G  A L               ++ A+EL   M
Sbjct: 226 TYTNMISAHCKVGNVKDA---KRVLLEMGEKARL---------------LDEAIELKRSM 267

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G    P++ TY  +I  FC +   +EA  +L  M  +G  P  +T + LI GF  +G
Sbjct: 268 VDKG--LVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQG 325

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           ++++A+++ D++VA G  ++   +++L+  + +  ++++A ++  +M+  GV+PD    S
Sbjct: 326 DIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYS 385

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           ++I   C G  +   F L ++++K     +V +  +SV++ GLCR
Sbjct: 386 LLIEGHCRGQNMARAFELLDEMKKRKLAPTVLT--YSVIINGLCR 428



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 123/267 (46%), Gaps = 11/267 (4%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           +NP+    ++E     G      +  VI N C K     +A+ + ++M E      T+ +
Sbjct: 710 KNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSF 768

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N +I  +C+ G +  A+ L++ M      P+ +TY S+I   C AG + +A  L+  M+ 
Sbjct: 769 NTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQE 828

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
                    Y++LL G   +G+M     L  EM  +G    P+ +TY  +I  +C +G +
Sbjct: 829 RNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKG--IEPDKMTYYVMIDAYCREGNV 886

Query: 288 KEALGILDRMEALGCAPNRV-------TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            EA  + D +   G  P +        T S + +GF + GN+DEA +++  +V  G VS+
Sbjct: 887 MEACKLKDEILVKG-MPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSN 945

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKM 367
                 LV         ++++ L  +M
Sbjct: 946 TTSLGDLVDGNQNGANSEDSDNLLKQM 972



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 5/243 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           +F+YN        ++     +D+ +   E+G   +V    +I   C+  +L  EA  +L 
Sbjct: 731 AFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKL-QEANHLLE 789

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M E    P+ + Y ++I   C+ G M  A  L   M   ++ P   TY S++ G+ N G
Sbjct: 790 EMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIG 849

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP---- 269
            + +   LF+ M   G   + + Y  ++D  CR G++  A +L  E+  +G         
Sbjct: 850 NMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRL 909

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
            + T + + + F   G M EA  +L  M   G   N  ++  L+ G     N +++  L+
Sbjct: 910 GLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLL 969

Query: 330 DKV 332
            ++
Sbjct: 970 KQM 972


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 175/368 (47%), Gaps = 44/368 (11%)

Query: 134 VIFNLC----EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           V++N+C     KA   + A     ++    LRPD + Y +++ + C+ G +  A+EL   
Sbjct: 247 VLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQ 306

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M      P    Y +MI G+ +A R +DA  L + ++  GC  ++V+++++L  + +   
Sbjct: 307 MEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRK 366

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME----------- 298
           ++ AL L   M+K   D  PN+ TY  +I + C  G + EA  I D ME           
Sbjct: 367 VDEALTLFDVMKK---DAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSV 423

Query: 299 ------------------------ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
                                     GC PN VT  +LI G   +G +D+AY+L +K++ 
Sbjct: 424 NIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLD 483

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G  ++   Y+SL+       R ++  K++ +M+  G +PD    +  +  +   G+V +
Sbjct: 484 AGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEK 543

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           G  ++ED++  GFL  V S  +S+L+ GL +   + E + + + M ++   L     + +
Sbjct: 544 GRAIFEDMKSFGFLPDVRS--YSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAV 601

Query: 455 VEHLKKSG 462
           V+ L KSG
Sbjct: 602 VDGLCKSG 609



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 142/286 (49%), Gaps = 2/286 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  K  G +  V+   ++ +   KA  A E   + + M +     D   YN V+   C
Sbjct: 547 IFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLC 606

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A E+++ M +  ++P + TY S++ G     RL++A  LF+  K  G   N++
Sbjct: 607 KSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVI 666

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS+L+DG  ++G ++ A  +L EM K+G   +PNV T+ S++        + EAL    
Sbjct: 667 LYSSLIDGFGKVGRIDEAYLILEEMMKKG--LTPNVYTWNSLMDALVKTEEIDEALICFQ 724

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+ + C+PN  T S LI G C     ++A+    ++   G + +   Y++++  L +  
Sbjct: 725 SMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVG 784

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
            + +A  LF +   +G  PD  + + +I  +    + +E + ++E+
Sbjct: 785 NITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEE 830



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 141/275 (51%), Gaps = 4/275 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           RPD  + N  +    + G++     + + M      PD+ +Y  +I G   AG+  +   
Sbjct: 522 RPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSN 581

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +F+ M + G A +  AY+A++DG+C+ G +++A E+L EM+ +     P V TY S++  
Sbjct: 582 IFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVK--HVHPTVATYGSIVDG 639

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
                 + EA  + +  ++ G   N +  S+LI GF   G +DEAY ++++++  G   +
Sbjct: 640 LAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 699

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++SL+  LV+T+ + EA   F  M      P+    S++I  LC   +  + F  ++
Sbjct: 700 VYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQ 759

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +++K G + +V +  ++ ++ GL +  +  +A  L
Sbjct: 760 EMQKQGLIPNVVT--YTTMISGLAKVGNITDAYSL 792



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 175/390 (44%), Gaps = 10/390 (2%)

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSR 105
           +  TL++  A      V  +     PS   +   FF+ A+  SS       YN    +  
Sbjct: 63  VSSTLSSAPAPAHDVVVYVLRSLKNPS---LAAPFFLLASASSSQPLPPDAYNAV--LPF 117

Query: 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165
           +  + + +  V+E     G  +       +     ++R   +A  V+  M     RP   
Sbjct: 118 LSHDLAALEKVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFS 177

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            Y  +I    E      A EL++ M  +     +  + ++++     G++E A  L   +
Sbjct: 178 AYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEV 237

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
           K      ++V Y+  +D   + GS++ A +   E++  G    P+ V+YTS++ + C  G
Sbjct: 238 KGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHG--LRPDDVSYTSMVWVLCKAG 295

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            + EA  +  +MEA    P     +T+I G+      D+AY+L++++   G + S   ++
Sbjct: 296 RLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFN 355

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           S++  L + +++ EA  LF  M     KP+    +++I  LC+ G+V E + + +++E  
Sbjct: 356 SILTCLGKKRKVDEALTLFDVM-KKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELA 414

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G   ++ S   ++++  LC+ N   EA ++
Sbjct: 415 GLFPNLLS--VNIMVDRLCKANQLEEAHRI 442



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 148/364 (40%), Gaps = 69/364 (18%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  +E GC+ SV     I     K R  +EA+ +   M + D +P+   YN +I + C
Sbjct: 338 LLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKK-DAKPNISTYNIIIDMLC 396

Query: 176 EKGDMIAADELMKGMGLIDLYPDI-----------------------------------I 200
             G +  A ++   M L  L+P++                                   +
Sbjct: 397 MAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSV 456

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY S+I G    G+++DA  LF+ M   G  AN + Y++L+      G  E   ++  EM
Sbjct: 457 TYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEM 516

Query: 261 EKEGG-----------DCS----------------------PNVVTYTSVIQIFCGKGMM 287
            + GG           DC                       P+V +Y+ +I      G  
Sbjct: 517 IRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQA 576

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           +E   I   M   G A +    + ++ G C  G +D+AY++++++       +   Y S+
Sbjct: 577 RETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSI 636

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           V  L +  RL EA  LF +  + G++ + +  S +I      G++ E + + E++ K G 
Sbjct: 637 VDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGL 696

Query: 408 LSSV 411
             +V
Sbjct: 697 TPNV 700



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 119/246 (48%), Gaps = 2/246 (0%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +V+E  K +    +V     I +   K    +EA  +  +     +  + I+Y+++I  F
Sbjct: 616 EVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGF 675

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            + G +  A  +++ M    L P++ T+ S++        +++A   F+ MK   C+ N 
Sbjct: 676 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNT 735

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             YS L++G+CR+    +A     EM+K+G    PNVVTYT++I      G + +A  + 
Sbjct: 736 YTYSILINGLCRVQKYNKAFVFWQEMQKQG--LIPNVVTYTTMISGLAKVGNITDAYSLF 793

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           +R +  G  P+  + + LI+G        EAYQ+ ++    G   +     SL+  L +T
Sbjct: 794 ERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDALNKT 853

Query: 355 KRLKEA 360
           + L++A
Sbjct: 854 ECLEQA 859


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 159/299 (53%), Gaps = 15/299 (5%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   R+A EA  +  +M E+++ P+ + YN +I   C++G+ + A EL+  M   
Sbjct: 501 LISGLCHANRMA-EANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEK 559

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLF--------KVMKRHGCAANLVAYSALLDGIC 245
            L PD  TY  +I G C+ GR+ +A            K+ +  GC  N+V Y+AL++G+C
Sbjct: 560 GLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLC 619

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           ++G M++A  L  EM     +  PN  TY   +     +G +++A+ + D +   G   N
Sbjct: 620 KIGLMDKAELLCREML--ASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE-GFLAN 676

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            VT + LI+GFC  G + EA +++  ++  G       YS+++ E  R   LKEA KL+ 
Sbjct: 677 TVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWE 736

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDSDIHSVLLL 421
            ML  GV PD +A + +I   C+ G++ + F L +D+ + G     ++ +S IH   L+
Sbjct: 737 SMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLM 795



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 150/303 (49%), Gaps = 7/303 (2%)

Query: 134 VIFNLCEKARL-ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           ++  LC+     A E M  + +M EF   P     +N++    +KG++ +A +L+  +  
Sbjct: 291 LVLGLCKVEEFEAGEEM--MNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKK 348

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             + P +  Y ++I   C  G+L++A  LF  M   G   N V YS L+D  C+ G ++ 
Sbjct: 349 FGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDV 408

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           AL  LG+M + G      V  Y+S+I   C  G ++ A  + D M A G  PN V  ++L
Sbjct: 409 ALHFLGKMTEVG--IKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSL 466

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G+C EG L  A++L  ++   G   +   +++L+  L    R+ EA KLF +M+   V
Sbjct: 467 ISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNV 526

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            P+ +  +V+I   C  G  +  F L +++ + G +   D+  +  L+ GLC      EA
Sbjct: 527 IPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVP--DTYTYRPLISGLCSTGRVSEA 584

Query: 433 AKL 435
            + 
Sbjct: 585 REF 587



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 141/301 (46%), Gaps = 12/301 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  ++ K+ +F + P   +YN +I   C+ G +  A+ L   MG   L+P+ +TY  +I 
Sbjct: 339 AFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILID 398

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            FC  G+L+ A      M   G  A +  YS+L+ G C+LG +  A  L  EM   G   
Sbjct: 399 SFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANG--L 456

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PNVV YTS+I  +C +G +  A  +   M   G +PN  T + LI G C    + EA +
Sbjct: 457 KPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANK 516

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  ++V    + +   Y+ L+    +      A +L  +M+  G+ PD      +I  LC
Sbjct: 517 LFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLC 576

Query: 388 LGGQVLEGFCLYEDI--------EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
             G+V E      D+        E  G L +V +  ++ L+ GLC+     +A  L R M
Sbjct: 577 STGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVT--YTALINGLCKIGLMDKAELLCREM 634

Query: 440 L 440
           L
Sbjct: 635 L 635



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 168/381 (44%), Gaps = 35/381 (9%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           VV    + G +  ++ +  + N   + R    A+ +  ++    LRPD  +Y  V+R  C
Sbjct: 167 VVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLC 226

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           E  D I A E++  M        + TY   I+G C   R+ +A  +  ++   G  A++ 
Sbjct: 227 ELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVG 286

Query: 236 AYSALLDGICRLGSMERALELLGEM-------------------EKEGG----------- 265
            Y  L+ G+C++   E   E++ EM                    K+G            
Sbjct: 287 TYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKV 346

Query: 266 ---DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
                +P++  Y ++I   C  G + EA  + + M   G  PN VT S LI  FC  G L
Sbjct: 347 KKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKL 406

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           D A   + K+   G  ++   YSSL+    +  +L+ A+ LF +M+A+G+KP+ +  + +
Sbjct: 407 DVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSL 466

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           I   C  G++   F LY ++   G   S ++   + L+ GLC  N   EA KL   M++ 
Sbjct: 467 ISGYCKEGELHNAFRLYHEMTGKGI--SPNTYTFTALISGLCHANRMAEANKLFGEMVEW 524

Query: 443 RIWLQGPYVDKIVEHLKKSGD 463
            +       + ++E   K G+
Sbjct: 525 NVIPNEVTYNVLIEGHCKEGN 545



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 157/329 (47%), Gaps = 6/329 (1%)

Query: 115 DVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +V+   +  GC +SV    V I  LC+  R+  EA+ +   +    LR D   Y  ++  
Sbjct: 236 EVIGRMESSGCDLSVATYNVFIRGLCKNQRVW-EAVEIKNLLSYKGLRADVGTYCTLVLG 294

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C+  +  A +E+M  M      P      +++ G    G +  A  L   +K+ G A +
Sbjct: 295 LCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPS 354

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           L  Y+AL++ +C+ G ++ A  L   M  +G    PN VTY+ +I  FC +G +  AL  
Sbjct: 355 LFVYNALINSMCKDGKLDEAESLFNNMGHKG--LFPNDVTYSILIDSFCKRGKLDVALHF 412

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L +M  +G        S+LI G C  G L  A  L D+++A G   +   Y+SL+    +
Sbjct: 413 LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCK 472

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
              L  A +L+ +M   G+ P+    + +I  LC   ++ E   L+ ++ +   +   + 
Sbjct: 473 EGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIP--NE 530

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             ++VL+ G C++ ++V A +L   M++K
Sbjct: 531 VTYNVLIEGHCKEGNTVRAFELLDEMVEK 559



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 3/196 (1%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           EGC+ +V     + N   K  L ++A  + R+M   +  P+   Y   +     +G++  
Sbjct: 602 EGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEK 661

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +L   + L     + +TY  +I+GFC  GR+++A  +   M   G + + ++YS ++ 
Sbjct: 662 AIQLHDVL-LEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIY 720

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
             CR G ++ A++L   M   G   +P+ V Y  +I   C  G + +A  + D M   G 
Sbjct: 721 EYCRRGDLKEAIKLWESMLNRG--VNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGV 778

Query: 303 APNRVTISTLIKGFCV 318
            PNR T ++LI G C+
Sbjct: 779 KPNRATYNSLIHGTCL 794



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+  R+  EA  VL  M +  + PD I Y+ +I  +C +GD+  A +L + M   
Sbjct: 683 LIRGFCKLGRI-QEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNR 741

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
            + PD + Y  +I G C  G L  A  L   M R G   N   Y++L+ G C + S+
Sbjct: 742 GVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSV 798



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 6/202 (2%)

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +IQ +       + L ++  M   G  P   T+S ++ G         A  L D++V+ G
Sbjct: 151 LIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSG 210

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
                  Y+++V  L   K    A ++  +M +SG        +V IR LC   +V E  
Sbjct: 211 LRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAV 270

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456
            +   +   G  + V +  +  L+LGLC+        ++   M++         V  +V+
Sbjct: 271 EIKNLLSYKGLRADVGT--YCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVD 328

Query: 457 HLKKSGD----EELITNLPKIG 474
            L+K G+     +L+  + K G
Sbjct: 329 GLRKKGNIGSAFDLVNKVKKFG 350


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 157/293 (53%), Gaps = 6/293 (2%)

Query: 143 RLA-NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           RLA + +  ++R++ E    P+   +N VI   C++G++  A  L   M  +   PD++T
Sbjct: 166 RLARDRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVT 225

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           + S+I G+   G L++   L + M+R GC A++V Y+AL++  C+ G ME A      M+
Sbjct: 226 FNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK 285

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           +EG     NVVT+++ +  FC +G+++EA+ +  +M   G A N  T + LI G C  G 
Sbjct: 286 REG--VMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           LD+A  L+D++V  G   +   Y+ LV  L + +++ EAE +   M  +GV+ + L  + 
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           +I    +     +   L  +++  G    +D  ++  L+ GLC   H ++ AK
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGL--ELDISLYGALIQGLCNV-HKLDEAK 453



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 40/334 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC++  LA EA  +  +M E    PD + +N++I  + + G++   ++L++ M   
Sbjct: 194 VIDFLCKEGELA-EARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRS 252

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA----------------- 236
               D++TY ++I  FC  GR+E A G F  MKR G  AN+V                  
Sbjct: 253 GCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREA 312

Query: 237 ------------------YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
                             Y+ L+DG C+ G ++ A+ LL EM ++G     NVVTYT ++
Sbjct: 313 MKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG--VPLNVVTYTVLV 370

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C +  + EA  +L  ME  G   N +  +TLI G  +  N ++A  L+ ++   G  
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y +L+  L    +L EA+ L +KM  SG++P+ +  + M+      G+V E   +
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            + I   GF  +V +  +  L+ GLC+     EA
Sbjct: 491 LQKILDSGFQPNVIT--YCALIDGLCKAGSIDEA 522



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 168/360 (46%), Gaps = 18/360 (5%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKM 155
           Y +  E+  ++Q       +VE  +  GC   V     + N  C+  R+   A      M
Sbjct: 233 YGKCGELDEVEQ-------LVEEMRRSGCKADVVTYNALINCFCKFGRMET-AYGYFAAM 284

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               +  + + ++  +  FC++G +  A +L   M +  +  +  TY  +I G C AGRL
Sbjct: 285 KREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRL 344

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           +DA  L   M R G   N+V Y+ L+DG+C+   +  A ++L  MEK G     N + YT
Sbjct: 345 DDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAG--VRANELLYT 402

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           ++I         ++ALG+L  M+  G   +      LI+G C    LDEA  L+ K+   
Sbjct: 403 TLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES 462

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   Y++++    ++ ++ EA  +  K+L SG +P+ +    +I  LC  G + E 
Sbjct: 463 GLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEA 522

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
              +  +  +G   +V +  ++ L+ GLC+     EA +L   M+ K     G  +DK+V
Sbjct: 523 ISHFNKMRDLGLDPNVQA--YTALVDGLCKNGCLNEAVQLFNEMVHK-----GMSLDKVV 575



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 136/270 (50%), Gaps = 3/270 (1%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           + +A+ +L +M    L  D  +Y  +I+  C    +  A  L+  M    L P+ I Y +
Sbjct: 414 SEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           M+     +G++ +A  + + +   G   N++ Y AL+DG+C+ GS++ A+    +M   G
Sbjct: 474 MMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLG 533

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
            D  PNV  YT+++   C  G + EA+ + + M   G + ++V  + L+ G+  +GNL +
Sbjct: 534 LD--PNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHD 591

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A+ L  K++  G      CY+  +        + EA ++FS+M+  G+ PD    + +I 
Sbjct: 592 AFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLIS 651

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
           +    G + E   L +++E++   S  DSD
Sbjct: 652 KYQKLGNLEEAISLQDEMERV-LPSCTDSD 680



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 138/282 (48%), Gaps = 4/282 (1%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM-KVIFNLCEKARLA 145
           ++  R +  +Y        + +N    + ++   K +G  + + +   +I  LC   +L 
Sbjct: 391 KAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKL- 449

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA  +L KM E  L P+ IIY  ++    + G +  A  +++ +      P++ITY ++
Sbjct: 450 DEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCAL 509

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C AG +++A   F  M+  G   N+ AY+AL+DG+C+ G +  A++L  EM  +G 
Sbjct: 510 IDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG- 568

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             S + V YT+++  +  +G + +A  +  +M   G   +    +  I GFC    + EA
Sbjct: 569 -MSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEA 627

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            ++  +++  G       Y+ L+ +  +   L+EA  L  +M
Sbjct: 628 REVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEM 669


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 152/315 (48%), Gaps = 4/315 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A  V   MP+   R + + Y N+I   CE G +     + K M   D YP + TY  +
Sbjct: 21  NSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVI 80

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +     +GR  +A  LF  M+  GC  N+  Y+ +++ +C+   +E    +L EM ++G 
Sbjct: 81  VHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKG- 139

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+V TY ++I  +C +GM++ A  ILD M +  C PN  T + LI GFC + N+  A
Sbjct: 140 -LVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRA 198

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L+ K++      S   Y+SL+    +   L  A +L + M  +GV PD    SV I  
Sbjct: 199 MALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDT 258

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           LC  G++ E   L+  +++ G     +  I++ L+ G C+     +A  L   ML +   
Sbjct: 259 LCKKGRIEEANVLFNSLKEKGI--KANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCL 316

Query: 446 LQGPYVDKIVEHLKK 460
                 + +++ L K
Sbjct: 317 PNSSTYNALIDGLCK 331



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 153/321 (47%), Gaps = 10/321 (3%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           + M N  C+ +++++   I+ ++VE    +G V SV     + +   K  +   A  +L 
Sbjct: 113 TVMINAMCKETKLEEGRRILDEMVE----KGLVPSVPTYNALIDGYCKEGMVEAAQEILD 168

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M      P+   YN +I  FC K ++  A  L+  M    L P ++TY S+I G C  G
Sbjct: 169 LMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIG 228

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            L+ A  L  +M  +G   +   YS  +D +C+ G +E A  L   ++++G     N V 
Sbjct: 229 YLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKG--IKANEVI 286

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YT++I  +C  G M +A  +LDRM    C PN  T + LI G C E  + EA  L++ ++
Sbjct: 287 YTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMI 346

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G   +   Y+ L+V +++      A ++  +M++SG +PD    +  I   C  G + 
Sbjct: 347 QKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIK 406

Query: 394 EGFCLYEDIEKIGFLSSVDSD 414
           E     ED+  + F   V  D
Sbjct: 407 EA----EDMMSMMFERGVMPD 423



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 130/251 (51%), Gaps = 3/251 (1%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           ++I   C K  + + AM +L KM E  L P  + YN++I   C+ G + +A  L+  M  
Sbjct: 184 ELICGFCRKKNV-HRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNE 242

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             + PD  TY   I   C  GR+E+A  LF  +K  G  AN V Y+AL+DG C+ G M+ 
Sbjct: 243 NGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDD 302

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A  LL  M  E  DC PN  TY ++I   C +  ++EAL +++ M   G      T + L
Sbjct: 303 ANSLLDRMLTE--DCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTIL 360

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I     EG+ D A++++D++V+ G       Y++ +        +KEAE + S M   GV
Sbjct: 361 IVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGV 420

Query: 373 KPDGLACSVMI 383
            PD L  +++I
Sbjct: 421 MPDALTYTLVI 431



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 160/332 (48%), Gaps = 6/332 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I++    +E GC  ++    V+ N +C++ +L  E   +L +M E  L P    YN +I 
Sbjct: 94  INLFSEMRERGCEPNIHTYTVMINAMCKETKL-EEGRRILDEMVEKGLVPSVPTYNALID 152

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            +C++G + AA E++  M      P+  TY  +I GFC    +  A  L   M       
Sbjct: 153 GYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTP 212

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++V Y++L+ G C++G ++ A  LL  M + G    P+  TY+  I   C KG ++EA  
Sbjct: 213 SVVTYNSLIHGQCKIGYLDSAYRLLNLMNENG--VVPDQWTYSVFIDTLCKKGRIEEANV 270

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + + ++  G   N V  + LI G+C  G +D+A  L+D+++    + +   Y++L+  L 
Sbjct: 271 LFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLC 330

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           + ++++EA  L   M+  G+K      +++I  +   G       + + +   G+    D
Sbjct: 331 KERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGY--QPD 388

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             I++  +   C + +  EA  +   M ++ +
Sbjct: 389 VYIYTAFIHAFCTRGNIKEAEDMMSMMFERGV 420



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 158/326 (48%), Gaps = 8/326 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           CE+ R+ +     I++ +  +E+ C  +V+   VI +   ++    EA+ +  +M E   
Sbjct: 50  CEVGRVDEG----INIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGC 105

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+   Y  +I   C++  +     ++  M    L P + TY ++I G+C  G +E A  
Sbjct: 106 EPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQE 165

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +  +M  + C  N   Y+ L+ G CR  ++ RA+ LL +M +     +P+VVTY S+I  
Sbjct: 166 ILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLE--SRLTPSVVTYNSLIHG 223

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +  A  +L+ M   G  P++ T S  I   C +G ++EA  L + +   G  ++
Sbjct: 224 QCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKAN 283

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+    +  ++ +A  L  +ML     P+    + +I  LC   +V E   L E
Sbjct: 284 EVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLME 343

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRK 426
            + + G   +V +  +++L++ + ++
Sbjct: 344 SMIQKGLKCTVPT--YTILIVAMLKE 367



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 120/263 (45%), Gaps = 17/263 (6%)

Query: 205 MIKGFCNAGRL---------EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
           M+ G+C  G L           A  +F +M + GC  N V+Y+ L+ G+C +G ++  + 
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           +  +M ++  DC P V TYT ++      G   EA+ +   M   GC PN  T + +I  
Sbjct: 61  IFKKMRED--DCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINA 118

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C E  L+E  +++D++V  G V S   Y++L+    +   ++ A+++   M ++   P+
Sbjct: 119 MCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPN 178

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
               + +I   C    V     L   + +     SV +  ++ L+ G C+  +   A +L
Sbjct: 179 ERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVT--YNSLIHGQCKIGYLDSAYRL 236

Query: 436 ARFMLKKRI----WLQGPYVDKI 454
              M +  +    W    ++D +
Sbjct: 237 LNLMNENGVVPDQWTYSVFIDTL 259



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 114/272 (41%), Gaps = 31/272 (11%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  +L +M     +PD  IY   I  FC +G++  A+++M  M    + PD +TY  +I 
Sbjct: 373 AHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVID 432

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYS------------------ALLDGI----- 244
            +   G L  A  + K M   GC  +   YS                  AL D I     
Sbjct: 433 AYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFF 492

Query: 245 ------CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
                  ++   E ALEL  +M + G  CSPN+ TY  +I   C  G +  A  + D M 
Sbjct: 493 ADVADVWKMMKFETALELFEKMLEHG--CSPNINTYAKLIIGLCKVGRLGVAQKLFDHMN 550

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             G +P+    ++L+   C  G   +A +L+  ++  G +      + L   L      +
Sbjct: 551 ERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKE 610

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +A+ +FS +L  G   D +A  ++I  L   G
Sbjct: 611 KAKVVFSNLLQCGYNDDEVAWKILIDGLLKNG 642



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 144/367 (39%), Gaps = 50/367 (13%)

Query: 42  NPNNIEKTLATVKAKLDSTCV---IEVLHRCFPSQSQMGIRF--FIWAALQSSYRHSSFM 96
           N N +     T    +D+ C    IE  +  F S  + GI+    I+ AL   Y      
Sbjct: 241 NENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGY------ 294

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
               C+  ++    S++  ++     E C+ +      + +   K R   EA+ ++  M 
Sbjct: 295 ----CKAGKMDDANSLLDRMLT----EDCLPNSSTYNALIDGLCKERKVQEALLLMESMI 346

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           +  L+     Y  +I    ++GD   A  ++  M      PD+  Y + I  FC  G ++
Sbjct: 347 QKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIK 406

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           +A  +  +M   G   + + Y+ ++D    LG +  A ++L  M   G  C P+  TY+ 
Sbjct: 407 EAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTG--CDPSHHTYSC 464

Query: 277 VIQIFCGKGMMKE-----------------------------ALGILDRMEALGCAPNRV 307
           +I+    + + K+                             AL + ++M   GC+PN  
Sbjct: 465 LIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNIN 524

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + LI G C  G L  A +L D +   G   S   Y+SL+          +A +L   M
Sbjct: 525 TYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAM 584

Query: 368 LASGVKP 374
           +  G  P
Sbjct: 585 MEHGHLP 591



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 121/288 (42%), Gaps = 8/288 (2%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           + S Y+   ++Y         + N     D++    E G +       ++ +      L 
Sbjct: 381 VSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLL 440

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A  VL++M +    P    Y+ +I+   ++       +  K + L D  P++  + + 
Sbjct: 441 NPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKE----ELTKKYKNVALCDSIPNV--FFAD 494

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +       + E A  LF+ M  HGC+ N+  Y+ L+ G+C++G +  A +L   M + G 
Sbjct: 495 VADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERG- 553

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             SP+   Y S++   C  G+  +A+ ++  M   G  P   +++ L  G   EG+ ++A
Sbjct: 554 -VSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKA 612

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             +   ++  G       +  L+  L++        +L   M A G +
Sbjct: 613 KVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQ 660



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMM-KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++ E   E GC  ++    K+I  LC+  RL   A  +   M E  + P   IYN+++ 
Sbjct: 508 LELFEKMLEHGCSPNINTYAKLIIGLCKVGRLG-VAQKLFDHMNERGVSPSEAIYNSLLN 566

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             CE G    A  L+  M      P + +   +  G    G  E A  +F  + + G   
Sbjct: 567 CCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYND 626

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           + VA+  L+DG+ + G  +   ELLG ME  G    P   TY  +I+
Sbjct: 627 DEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQ--TYRMLIE 671


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 165/332 (49%), Gaps = 13/332 (3%)

Query: 95  FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           ++ N  C++ R+     +   + +         SV    +I       RL ++A  VL  
Sbjct: 321 YLMNGLCKIGRVDAAKDLFYRIPKP-------TSVIFNTLIHGFVTHGRL-DDAKAVLSD 372

Query: 155 M-PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           M   + + PD   YN++I  + +KG +  A E+++ M      P++ +Y  ++ GFC  G
Sbjct: 373 MVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLG 432

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           ++++A  L   M   G   N V ++ L+   C+   +  A+E+  EM ++G  C P+V T
Sbjct: 433 KIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG--CKPDVYT 490

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           + S+I   C    +K AL +L  M + G   N VT +TLI  F   G + EA +L++++V
Sbjct: 491 FNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMV 550

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             GS+     Y+SL+  L R   + +A  LF KML  G+ P  ++C+++I  LC  G V 
Sbjct: 551 FQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVE 610

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           E     +++   G  S+ D    + L+ GLCR
Sbjct: 611 EAVEFQKEMVLRG--STPDIVTFNSLINGLCR 640



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 169/347 (48%), Gaps = 13/347 (3%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           R+    +++ D+V +Y   G V  V     +     K  L   A+ VLR M     +P+ 
Sbjct: 362 RLDDAKAVLSDMVTSY---GIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNV 418

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
             Y  ++  FC+ G +  A  L+  M    L P+ + +  +I  FC   R+ +A  +F+ 
Sbjct: 419 YSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFRE 478

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M R GC  ++  +++L+ G+C +  ++ AL LL +M  EG     N VTY ++I  F  +
Sbjct: 479 MPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG--VVANTVTYNTLINAFLRR 536

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G +KEA  +++ M   G   + +T ++LIKG C  G +D+A  L +K++  G V S    
Sbjct: 537 GEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISC 596

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + L+  L R+  ++EA +   +M+  G  PD +  + +I  LC  G++ +G  ++  ++ 
Sbjct: 597 NILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQA 656

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR------FMLKKRIW 445
            G     D+  ++ L+  LC+     +A  L        F+   R W
Sbjct: 657 EGI--PPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTW 701



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 170/355 (47%), Gaps = 16/355 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C ++ +    S++ D+ +     GCV +  + + + +   K    NEA+ +L +M     
Sbjct: 222 CAVNEVDSALSVLRDMTK----HGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 277

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   +N+VI   C+   +  A +++  M +    PD ITY  ++ G C  GR++ A  
Sbjct: 278 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKD 337

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  + +       V ++ L+ G    G ++ A  +L +M    G   P+V TY S+I  
Sbjct: 338 LFYRIPK----PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYG-IVPDVCTYNSLIYG 392

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +  KG++  AL +L  M   GC PN  + + L+ GFC  G +DEAY L++++ A G   +
Sbjct: 393 YWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPN 452

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ L+    +  R+ EA ++F +M   G KPD    + +I  LC   ++     L  
Sbjct: 453 TVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLR 512

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
           D+   G +++  +  ++ L+    R+    EA KL   M+      QG  +D+I 
Sbjct: 513 DMISEGVVANTVT--YNTLINAFLRRGEIKEARKLVNEMV-----FQGSLLDEIT 560



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 154/320 (48%), Gaps = 11/320 (3%)

Query: 124 GCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GCV   +    VI  LC+  R+ NEA  ++ +M      PD I Y  ++   C+ G + A
Sbjct: 276 GCVPDAETFNDVILGLCKFDRI-NEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDA 334

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM-KRHGCAANLVAYSALL 241
           A +L   +      P  + + ++I GF   GRL+DA  +   M   +G   ++  Y++L+
Sbjct: 335 AKDLFYRIP----KPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 390

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G  + G +  ALE+L +M  +G  C PNV +YT ++  FC  G + EA  +L+ M A G
Sbjct: 391 YGYWKKGLVGLALEVLRDMRNKG--CKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADG 448

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN V  + LI  FC E  + EA ++  ++   G       ++SL+  L     +K A 
Sbjct: 449 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 508

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
            L   M++ GV  + +  + +I      G++ E   L  ++   G  S +D   ++ L+ 
Sbjct: 509 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG--SLLDEITYNSLIK 566

Query: 422 GLCRKNHSVEAAKLARFMLK 441
           GLCR     +A  L   ML+
Sbjct: 567 GLCRAGEVDKARSLFEKMLR 586



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 135/249 (54%), Gaps = 7/249 (2%)

Query: 113 IIDVVEAYKE---EGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           I + VE ++E   +GC   V     +I  LCE   + + A+W+LR M    +  +T+ YN
Sbjct: 469 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKH-ALWLLRDMISEGVVANTVTYN 527

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I  F  +G++  A +L+  M       D ITY S+IKG C AG ++ A  LF+ M R 
Sbjct: 528 TLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 587

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   + ++ + L++G+CR G +E A+E   EM   G   +P++VT+ S+I   C  G ++
Sbjct: 588 GLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGS--TPDIVTFNSLINGLCRAGRIE 645

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           + L +  +++A G  P+ VT +TL+   C  G + +A  L+D+ +  G V +   +S L+
Sbjct: 646 DGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILL 705

Query: 349 VELVRTKRL 357
             LV  + L
Sbjct: 706 QSLVPQETL 714



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 128/253 (50%), Gaps = 3/253 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C++ R+  EA+ + R+MP    +PD   +N++I   CE  ++  A  L++ M   
Sbjct: 459 LISAFCKEHRIP-EAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE 517

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  + +TY ++I  F   G +++A  L   M   G   + + Y++L+ G+CR G +++A
Sbjct: 518 GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKA 577

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  +M ++G    P+ ++   +I   C  GM++EA+     M   G  P+ VT ++LI
Sbjct: 578 RSLFEKMLRDG--LVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLI 635

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G +++   +  K+ A G       Y++L+  L +   + +A  L  + +  G  
Sbjct: 636 NGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFV 695

Query: 374 PDGLACSVMIREL 386
           P+    S++++ L
Sbjct: 696 PNDRTWSILLQSL 708



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/410 (20%), Positives = 159/410 (38%), Gaps = 45/410 (10%)

Query: 70  FPSQSQMGIRFFIWAALQSSYRHSSFMYN-------RACEMSRIKQ------------NP 110
            P      +  F W   Q  YRHS  +Y           E   I +              
Sbjct: 81  LPLDVSTSMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKE 140

Query: 111 SIIIDVVEAYKEEG-----------------CVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S+ I ++  Y + G                 C  + K   V+  +         A  V  
Sbjct: 141 SLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFY 200

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M    + P    +  V++  C   ++ +A  +++ M      P+ + Y ++I       
Sbjct: 201 DMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCN 260

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           R+ +A  L + M   GC  +   ++ ++ G+C+   +  A +++  M   G   +P+ +T
Sbjct: 261 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRG--FTPDDIT 318

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI-DKV 332
           Y  ++   C  G +  A  +  R+      P  V  +TLI GF   G LD+A  ++ D V
Sbjct: 319 YGYLMNGLCKIGRVDAAKDLFYRIP----KPTSVIFNTLIHGFVTHGRLDDAKAVLSDMV 374

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            + G V     Y+SL+    +   +  A ++   M   G KP+  + ++++   C  G++
Sbjct: 375 TSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKI 434

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            E + L  ++   G   +      + L+   C+++   EA ++ R M +K
Sbjct: 435 DEAYNLLNEMSADGLKPNTVG--FNCLISAFCKEHRIPEAVEIFREMPRK 482



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 59/137 (43%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E    +G V S     ++ N   ++ +  EA+   ++M      PD + +N++I   C
Sbjct: 580 LFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLC 639

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G +     + + +    + PD +TY +++   C  G + DAC L       G   N  
Sbjct: 640 RAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDR 699

Query: 236 AYSALLDGICRLGSMER 252
            +S LL  +    +++R
Sbjct: 700 TWSILLQSLVPQETLDR 716


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 146/273 (53%), Gaps = 2/273 (0%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC  +V     +     +  L  +    L +MPE    PD  +Y  +I   C+ G    A
Sbjct: 243 GCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVA 302

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           ++++  M    L P+++ Y +++KG C+A R E+A  L   M +  C  + V ++ L+D 
Sbjct: 303 NDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDF 362

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+ G ++R +ELL +M + G  C P+V+TYT+VI  FC +G++ EA+ +L  M A GC 
Sbjct: 363 FCQNGLVDRVIELLEQMLEHG--CIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCK 420

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN ++ + ++KG C      +A +LI  ++  G + +   +++L+  + +   +++A +L
Sbjct: 421 PNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIEL 480

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
             +ML +G  PD ++ S +I  L   G+  E  
Sbjct: 481 LKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 513



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 166/370 (44%), Gaps = 36/370 (9%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+  +CE+    +E + +LRK+P F   PD + YN V++  C        +ELM  M  +
Sbjct: 184 VVSAICEQG-CVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRV 242

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P++ T+ ++I   C  G  E        M  HGC  +L  Y+ ++DGIC+ G  E A
Sbjct: 243 GCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVA 302

Query: 254 LELLGEMEKEG---------------------------------GDCSPNVVTYTSVIQI 280
            ++L  M   G                                  DC  + VT+  ++  
Sbjct: 303 NDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDF 362

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC  G++   + +L++M   GC P+ +T +T+I GFC EG +DEA  L+  + A G   +
Sbjct: 363 FCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPN 422

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ ++  L R +R  +A++L S M+  G  P+ +  + +I  +C  G V +   L +
Sbjct: 423 TISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLK 482

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
            +   G   S D   +S ++ GL +   + EA +L   M+ K I         +   L +
Sbjct: 483 QMLVNG--CSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSR 540

Query: 461 SGDEELITNL 470
            G  + I  +
Sbjct: 541 EGRTDKIIQM 550



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 170/360 (47%), Gaps = 45/360 (12%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKAR--LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
           E GC   ++M   I + +C+     +AN+   +L +MP + L+P+ + YN V++  C   
Sbjct: 276 EHGCTPDLRMYATIIDGICKDGHHEVAND---ILSRMPSYGLKPNVVCYNTVLKGLCSAE 332

Query: 179 DMIAADELMKGM----------------------GLID-------------LYPDIITYV 203
               A++L+  M                      GL+D               PD+ITY 
Sbjct: 333 RWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYT 392

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++I GFC  G +++A  L K M   GC  N ++Y+ +L G+CR      A EL+  M ++
Sbjct: 393 TVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQ 452

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G  C PN VT+ ++I   C KG++++A+ +L +M   GC+P+ ++ ST+I G    G  +
Sbjct: 453 G--CLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 510

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           EA +L++ ++  G   +   YSS+   L R  R  +  ++F  +  + V+ D    + +I
Sbjct: 511 EALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVI 570

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
             LC   +       +  +   G +   +   +++L+ GL  +    EA  L   +  +R
Sbjct: 571 SSLCKRWETDRAIDFFAYMVSNGCMP--NESTYTILIRGLASEGLVREAQDLLSELCSRR 628



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 159/349 (45%), Gaps = 4/349 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V++     GC  +  M  VI     +      A+  L+ +       D+   N V+  
Sbjct: 128 LTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSA 187

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            CE+G +    EL++ +      PDI++Y +++KG C A R +D   L   M R GC  N
Sbjct: 188 ICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPN 247

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  ++ L+  +CR G  E+  E L +M + G  C+P++  Y ++I   C  G  + A  I
Sbjct: 248 VATFNTLIAYLCRNGLFEQVHEALSQMPEHG--CTPDLRMYATIIDGICKDGHHEVANDI 305

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L RM + G  PN V  +T++KG C     +EA  L+ ++           ++ LV    +
Sbjct: 306 LSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQ 365

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
              +    +L  +ML  G  PD +  + +I   C  G V E   L +++   G   +  S
Sbjct: 366 NGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTIS 425

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
             ++++L GLCR    V+A +L   M+++         + ++  + K G
Sbjct: 426 --YTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKG 472



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 124/255 (48%), Gaps = 2/255 (0%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +I+++E   E GC+  V     + N   K  L +EA+ +L+ M     +P+TI Y  V++
Sbjct: 372 VIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLK 431

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C     + A EL+  M      P+ +T+ ++I   C  G +E A  L K M  +GC+ 
Sbjct: 432 GLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSP 491

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L++YS ++DG+ + G  E ALELL  M  +G   +PN + Y+S+      +G   + + 
Sbjct: 492 DLISYSTVIDGLGKAGKTEEALELLNVMINKG--ITPNTIIYSSMASALSREGRTDKIIQ 549

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D ++      +    + +I   C     D A      +V+ G + +   Y+ L+  L 
Sbjct: 550 MFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLA 609

Query: 353 RTKRLKEAEKLFSKM 367
               ++EA+ L S++
Sbjct: 610 SEGLVREAQDLLSEL 624



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 148/346 (42%), Gaps = 24/346 (6%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           S ++  +I +LC   R A+ A    R +         + YN +I  +C  G + AA  L 
Sbjct: 44  SGRLSALIRSLCAAGRTADAA----RALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLA 99

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
                + + P+  TY  +++  C  G + DA  +   M   GCAA       +L+  CR 
Sbjct: 100 A---AVPVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRG 156

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    A+  L  +  +G  C+ +      V+   C +G + E + +L ++ + GC P+ V
Sbjct: 157 GGFRSAVRALQVLHAKG--CTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIV 214

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           + + ++KG C+    D+  +L+ ++V  G   +   +++L+  L R    ++  +  S+M
Sbjct: 215 SYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQM 274

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  PD    + +I  +C  G       +   +   G   +V    ++ +L GLC   
Sbjct: 275 PEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVC--YNTVLKGLCSAE 332

Query: 428 HSVEAAKLARFMLKKRIWL-------------QGPYVDKIVEHLKK 460
              EA  L   M ++   L             Q   VD+++E L++
Sbjct: 333 RWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQ 378


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 174/381 (45%), Gaps = 57/381 (14%)

Query: 114 IDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V    KE+G V  V     +I   C++  +  +A  +  +M    + P+  IYN ++ 
Sbjct: 345 LKVFSELKEKGLVPDVFTYSSLISGFCKQGEV-EKAFELHDEMCLKGIAPNIFIYNALVD 403

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C+ GD+  A +L  GM    L PD +TY +MI G+C +  + +A  LF  M   G   
Sbjct: 404 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQP 463

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG------------GDCS------------ 268
           +   Y+AL+ G C+ G ME+A+ L  EM ++G            G C             
Sbjct: 464 HSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQ 523

Query: 269 --------PNVVTYTSVIQIFCGKGMMKEA-----------------LGILDRMEALGCA 303
                   P+ VTYT+VI   C  G M+EA                   + ++M A G  
Sbjct: 524 EMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVK 583

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ VT   +I   C E NL EA++L D+VV  G ++ G  +  L+  L + + L EA KL
Sbjct: 584 PDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKL 643

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
             +M   G+KP   ACS ++R     G++ E   ++E ++ +G +    +      L+ L
Sbjct: 644 LDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTT------LIDL 697

Query: 424 CRKNHSVEAAKLARFMLKKRI 444
              N +   ++ AR ++K+ +
Sbjct: 698 VNGNLNDTDSEDARNLIKQLV 718



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 176/357 (49%), Gaps = 18/357 (5%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           + G + +  +  V+ N   KA    EA+ + R +    + PD    +  I    + G + 
Sbjct: 283 DHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQ 342

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A ++   +    L PD+ TY S+I GFC  G +E A  L   M   G A N+  Y+AL+
Sbjct: 343 EALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALV 402

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG+C+ G ++RA +L   M ++G    P+ VTY+++I  +C    + EA  +   M + G
Sbjct: 403 DGLCKSGDIQRARKLFDGMPEKG--LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 460

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+    + L+ G C EG++++A  L  +++  G  ++   +++L+    ++ +++EA 
Sbjct: 461 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEAS 519

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV---------- 411
           +LF +M+A  + PD +  + +I   C  G++ E   L++++++   +             
Sbjct: 520 QLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVA 579

Query: 412 -----DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
                D   + +++   C++++ VEA KL   ++ K +  +G   D ++  L K  D
Sbjct: 580 KGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRED 636



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 145/296 (48%), Gaps = 4/296 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +L  M    + PD   YN +I    + G M  A   +  +    L PD +T+ + I
Sbjct: 203 EARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 262

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+   G++ +A   F  M  HG   N   Y+ L++G  + G++  AL +   +   G  
Sbjct: 263 LGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALG-- 320

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+V T ++ I      G ++EAL +   ++  G  P+  T S+LI GFC +G +++A+
Sbjct: 321 VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 380

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L D++   G   +   Y++LV  L ++  ++ A KLF  M   G++PD +  S MI   
Sbjct: 381 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 440

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           C    V E F L+ ++   G      S +++ L+ G C++    +A  L R ML+K
Sbjct: 441 CKSENVAEAFSLFHEMPSKGV--QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK 494



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 159/319 (49%), Gaps = 6/319 (1%)

Query: 122 EEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+G V +     +I   LC   R+ NEA     +M +  L+PD    + +I  F  +GD+
Sbjct: 3   EKGLVPNTYTYTIITAGLCRAKRM-NEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDI 61

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
                +   M    +  ++ITY  +I G C  G++E A  + K M   GC  N   +  L
Sbjct: 62  DEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLL 121

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++G CR  +M RALELL EMEK   +  P+ V+Y ++I   C    +  A  +L++M   
Sbjct: 122 IEGYCREHNMGRALELLDEMEKR--NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFS 179

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN V  STLI G+  EG ++EA +L+D +   G      CY++++  L +  +++EA
Sbjct: 180 GLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEA 239

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
                ++   G+KPD +     I      G++ E    ++++   G +   ++ +++VL+
Sbjct: 240 STYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP--NNPLYTVLI 297

Query: 421 LGLCRKNHSVEAAKLARFM 439
            G  +  + +EA  + R +
Sbjct: 298 NGHFKAGNLMEALSIFRHL 316



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 164/345 (47%), Gaps = 9/345 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  ++  +A  +L+ M     +P++  +  +I  +C + +M  A EL+  M   
Sbjct: 86  LIHGLCKFGKM-EKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKR 144

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +L P  ++Y +MI G C+   L  A  L + M   G   N+V YS L+ G    G +E A
Sbjct: 145 NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEA 204

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL  M   G   +P++  Y ++I      G M+EA   L  ++  G  P+ VT    I
Sbjct: 205 RRLLDGMSCSG--VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 262

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+   G + EA +  D+++  G + +   Y+ L+    +   L EA  +F  + A GV 
Sbjct: 263 LGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVL 322

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD   CS  I  L   G+V E   ++ ++++ G +  V +  +S L+ G C++    +A 
Sbjct: 323 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFT--YSSLISGFCKQGEVEKAF 380

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGD----EELITNLPKIG 474
           +L   M  K I       + +V+ L KSGD     +L   +P+ G
Sbjct: 381 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 425



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 139/309 (44%), Gaps = 4/309 (1%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E  L P+T  Y  +    C    M  A    + M    L PD     ++I GF   G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +++   +  VM   G   NL+ Y+ L+ G+C+ G ME+A E+L  M   G  C PN  T+
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG--CKPNSRTF 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +I+ +C +  M  AL +LD ME     P+ V+   +I G C   +L  A +L++K+  
Sbjct: 119 CLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTF 178

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G   +   YS+L++      R++EA +L   M  SGV PD    + +I  L   G++ E
Sbjct: 179 SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEE 238

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
                 +I+  G     D+      +LG  +     EAAK    ML   +    P    +
Sbjct: 239 ASTYLLEIQGRGL--KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVL 296

Query: 455 VEHLKKSGD 463
           +    K+G+
Sbjct: 297 INGHFKAGN 305


>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 138/266 (51%), Gaps = 5/266 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMIKGFCNAGRLEDACG 220
           P+ I Y+ +I   C  G +  A EL + M   D + PD +TY  +IKGFC+ G+ + A  
Sbjct: 233 PNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARK 292

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + + M+ +GC  N+  YS L++G C+ G +E A E+  EM+  G    P+ V YT++I  
Sbjct: 293 IMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSG--LKPDTVGYTTLINC 350

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FCG G + EA+ +L  M  + C  + VT + L+KG C EG  DEA ++++ +   G   +
Sbjct: 351 FCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLN 410

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
            G Y  ++  L +   L+++  L   ML+ G  P     + ++  LC  G V        
Sbjct: 411 KGSYRIVLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAVTALF 470

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRK 426
            + ++GF     S  H  L+  +CR+
Sbjct: 471 GLTQMGFTPEPKSWAH--LIEYICRE 494



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 124/220 (56%), Gaps = 5/220 (2%)

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   ++ L+   C+ G +E ALE++ EM+K      PNV+TY+++I   CG G +KEA+ 
Sbjct: 198 NTCIFNILVKHHCKSGDLESALEVMHEMKK-SRRSYPNVITYSTLIDGLCGNGRLKEAIE 256

Query: 293 ILDRMEALG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
           + + M +     P+ +T S LIKGFC  G  D A ++++ + + G   +   YS L+   
Sbjct: 257 LFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGF 316

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +  RL+EA+++F +M +SG+KPD +  + +I   C  G++ E   L +++ ++      
Sbjct: 317 CKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMK--CKA 374

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL-QGPY 450
           D+   +VLL GLCR+    EA ++   +  + ++L +G Y
Sbjct: 375 DAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSY 414



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 4/270 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +I  LC   RL  EA+ +  +M   D + PD + Y+ +I+ FC  G    A ++M+ M  
Sbjct: 241 LIDGLCGNGRL-KEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRS 299

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P++  Y  ++ GFC  GRLE+A  +F  MK  G   + V Y+ L++  C +G ++ 
Sbjct: 300 NGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDE 359

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+ELL EM +    C  + VT+  +++  C +G   EAL +L+ +   G   N+ +   +
Sbjct: 360 AMELLKEMTE--MKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIV 417

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +   C +G L+++  L+  +++ G V      + L+V L     +  A      +   G 
Sbjct: 418 LNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAVTALFGLTQMGF 477

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            P+  + + +I  +C   ++L  F L +++
Sbjct: 478 TPEPKSWAHLIEYICRERKLLFVFELVDEL 507



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++E  +  GC  +V    V+ N  C++ RL  EA  V  +M    L+PDT+ Y  +I  F
Sbjct: 293 IMEFMRSNGCDPNVFNYSVLMNGFCKEGRL-EEAKEVFDEMKSSGLKPDTVGYTTLINCF 351

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C  G +  A EL+K M  +    D +T+  ++KG C  GR ++A  + + +   G   N 
Sbjct: 352 CGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNK 411

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
            +Y  +L+ +C+ G +E++  LLG M   G    P+  T   ++   C  GM+  A+  L
Sbjct: 412 GSYRIVLNFLCQKGELEKSCALLGLMLSRGF--VPHYATSNELLVCLCEAGMVDNAVTAL 469

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
             +  +G  P   + + LI+  C E  L   ++L+D++V   S
Sbjct: 470 FGLTQMGFTPEPKSWAHLIEYICRERKLLFVFELVDELVEKES 512


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 169/349 (48%), Gaps = 17/349 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYK---EEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMP 156
           CE  R K       DV E ++   E G   +V      I  LC K R   +A  VL +M 
Sbjct: 227 CEKGRFK-------DVSEFFRRMLETGTPPNVVNYTAWIDGLC-KRRYVKQAFHVLEEMV 278

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADEL-MKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
              L+P+   +  +I   C+ G    A  L +K +      P++ TY  MI G+C  G+L
Sbjct: 279 GRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKL 338

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
             A  L   M   G   N   Y+ L+ G C+ GS +RA EL+ +M++EG    PN+ TY 
Sbjct: 339 ARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEG--FLPNIYTYN 396

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           +VI  FC KG ++EA  +L    + G   +++T + LI   C +G++  A  L D++V  
Sbjct: 397 AVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVEN 456

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G       Y+SL+    + ++++E++K F K L  G+ P     + MI   C  G+    
Sbjct: 457 GCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLA 516

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             ++E + + G  +  DS  +  L+ GLC+++   EA  L   ML KR+
Sbjct: 517 LRVFERMVQNGCFA--DSITYGALISGLCKESRLEEAKALYEGMLDKRL 563



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 169/346 (48%), Gaps = 12/346 (3%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
           Y H++ + +  C++   ++   + + ++++   +  V +  +M  I   C + +LA   M
Sbjct: 287 YTHTTLI-DGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVM--IGGYCREGKLARAEM 343

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            ++R M E  L+P+T  Y  +I   C+ G    A ELM  M      P+I TY ++I GF
Sbjct: 344 LLVR-MVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGF 402

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C  G++++A  + ++    G   + + Y+ L+   C+ G +  AL+L   M + G  C P
Sbjct: 403 CKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENG--CCP 460

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           ++  YTS+I  +C +  M+E+    D+   +G  P + T +++I G+C  G    A ++ 
Sbjct: 461 DIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVF 520

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           +++V  G  +    Y +L+  L +  RL+EA+ L+  ML   + P  +    +  E C  
Sbjct: 521 ERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRR 580

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +      + + ++K   + +VD  +  +  LG       V+AA L
Sbjct: 581 EKTSIAVSVLDRLDKRQQVHTVDVVVRKLSALG------DVDAASL 620



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 149/320 (46%), Gaps = 3/320 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V +     G     +  + +  +C +     E   +L  M  +    D      V+R  C
Sbjct: 168 VFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLC 227

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           EKG      E  + M      P+++ Y + I G C    ++ A  + + M   G   N+ 
Sbjct: 228 EKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVY 287

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L+DG+C++G  ERA  L  ++ K      PNV TYT +I  +C +G +  A  +L 
Sbjct: 288 THTTLIDGLCKIGWTERAFRLFLKLIKSS-SYKPNVHTYTVMIGGYCREGKLARAEMLLV 346

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           RM   G  PN  T +TLI G C  G+ D A++L++K+   G + +   Y++++    +  
Sbjct: 347 RMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKG 406

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           +++EA K+     + G+K D +  +++I E C  G +     L++ + + G    +++  
Sbjct: 407 KIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEA-- 464

Query: 416 HSVLLLGLCRKNHSVEAAKL 435
           ++ L+   C++    E+ K 
Sbjct: 465 YTSLISTYCQQRQMEESQKF 484



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 139/295 (47%), Gaps = 6/295 (2%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N V+R+  E G  + A ++  GM    + PD  ++ +++   C  G++E+   L   M R
Sbjct: 150 NWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWR 209

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
           +G + +    + ++  +C  G  +   E    M + G    PNVV YT+ I   C +  +
Sbjct: 210 YGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETG--TPPNVVNYTAWIDGLCKRRYV 267

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSS 346
           K+A  +L+ M   G  PN  T +TLI G C  G  + A++L  K++   S       Y+ 
Sbjct: 268 KQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTV 327

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++    R  +L  AE L  +M+  G+KP+    + +I   C GG     F L   +++ G
Sbjct: 328 MIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEG 387

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG-PYVDKIVEHLKK 460
           FL ++ +  ++ ++ G C+K    EA K+ R    + +      Y   I EH K+
Sbjct: 388 FLPNIYT--YNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQ 440



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 109/277 (39%), Gaps = 54/277 (19%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           DLR    +Y      F  +G +  A E+M+GM               +  F  AGRL +A
Sbjct: 86  DLRRLMRLYVTAATAFVARGSLPMAHEVMRGM---------------VAAFGEAGRLPEA 130

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             +   M+ HG    +   + +L      GS   A ++   M + G    P+  ++ +++
Sbjct: 131 ADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG--VCPDERSFRALV 188

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
            + C +G ++E   +L  M   G + +  T + +++  C +G                  
Sbjct: 189 VVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKG------------------ 230

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                            R K+  + F +ML +G  P+ +  +  I  LC    V + F +
Sbjct: 231 -----------------RFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHV 273

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            E++   G   +V +  H+ L+ GLC+   +  A +L
Sbjct: 274 LEEMVGRGLKPNVYT--HTTLIDGLCKIGWTERAFRL 308



 Score = 39.3 bits (90), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 78/180 (43%), Gaps = 6/180 (3%)

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           ++  F   G + EA  ++  M + G      T + +++     G+   A ++ D +   G
Sbjct: 117 MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 176

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
                  + +LVV   R  +++E + L + M   G   D   C+V++R LC  G+  +  
Sbjct: 177 VCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 236

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM----LKKRIWLQGPYVD 452
             +  + + G   +V +  ++  + GLC++ +  +A  +   M    LK  ++     +D
Sbjct: 237 EFFRRMLETGTPPNVVN--YTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLID 294


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 144/264 (54%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  + + GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 215 GLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
               ++          Y++L+  L +  R  +AEK+  +ML+ G+K +    +++I E C
Sbjct: 333 YRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++++ G++ SV
Sbjct: 393 KKGDVWTGSKLMKEMQRDGYVPSV 416



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 256 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K+M +     + VAY+AL+ G+C+ G    A ++L EM  
Sbjct: 315 TTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G      + TYT +I  FC KG +     ++  M+  G  P+ VT
Sbjct: 375 VG--LKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 152/342 (44%), Gaps = 47/342 (13%)

Query: 161 RPDTIIYNNVIRLFCEKG---DMIAADELMKGMGL---IDLYPDIITYVSMIKGFCNAGR 214
           R D  +++ +I  + E G   D I    L K        D    ++ ++  +K F     
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECXRLTKEHKFRVPFDTCRKVLEHLMKLKYF----- 117

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            +   G ++     G  A+L  ++ L+   C+ G +  A  +   + K G    P+VV++
Sbjct: 118 -KLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWG--LRPSVVSF 174

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            +++  +   G + E   + + M+A G  P+  T S LI G C E  +D+A +L D+++ 
Sbjct: 175 NTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD 234

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G V +G  +++L+    +  R+  A +++ +ML+  + PD +  + +I  LC  G + +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 395 GFCLYEDI-------EKIGFLSSVD-------------------------SDI-HSVLLL 421
              L +++       +KI + + +D                          D+ ++ L+ 
Sbjct: 295 AQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALIS 354

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           GLC++  SV+A K+ R ML   + L+      I+    K GD
Sbjct: 355 GLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGD 396


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 148/270 (54%), Gaps = 8/270 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
               MK +   C+ A+  +E+++ L+ M     +PD I+   +I+ F    +M   ++ +
Sbjct: 77  DTNFMKTLNRSCKSAKY-DESLYFLQHMVNRGYKPDVILCTKLIKGFF---NMKKIEKAI 132

Query: 188 KGMGLIDLY--PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           + M +++ +  PD+  Y ++I GFC A R++ A  +   MK+ G   ++V Y+ L+   C
Sbjct: 133 QVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFC 192

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
             G ++ AL ++ ++ K+  +C P V+TYT +I+    +G + EA+ +LD M + G  P+
Sbjct: 193 GRGRLDLALRVMDQLLKD--NCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPD 250

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
           R T + ++ G C EG LD A++ + ++   G V+    Y+ L+ +L+   + +  EKL S
Sbjct: 251 RYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMS 310

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEG 395
            ML  G +P+ +  S +I  LC  G++ E 
Sbjct: 311 DMLVKGCEPNPITYSTLITALCRDGKIDEA 340



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 165/346 (47%), Gaps = 11/346 (3%)

Query: 89  SYRHSSFM--YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
            +R ++FM   NR+C+ ++  ++   +  +V    +   ++  K++K  FN+ +K   A 
Sbjct: 74  DFRDTNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNM-KKIEKAI 132

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           + M +L K      +PD   YN VI  FC+   +  A +++  M      PD++TY  +I
Sbjct: 133 QVMEILEKHG----KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILI 188

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
             FC  GRL+ A  +   + +  C   ++ Y+ L++     G ++ A++LL EM   G  
Sbjct: 189 GNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRG-- 246

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+  TY  V+   C +GM+  A   L R+   GC     T + L++    EG  +   
Sbjct: 247 LRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGE 306

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+  ++  G   +   YS+L+  L R  ++ EA+ +   M    + PDG +   +I  L
Sbjct: 307 KLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISAL 366

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           C  G+V       +D+   G L  + S  ++ +L  LC+  ++ EA
Sbjct: 367 CREGKVDLAIEFLDDMISGGHLPDILS--YNSILASLCKNGNADEA 410



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 179/397 (45%), Gaps = 48/397 (12%)

Query: 86  LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141
           L+   +   F YN      C+  R+  + S ++D ++    E  VV+  ++  I N C +
Sbjct: 138 LEKHGKPDVFAYNAVISGFCKADRV-DHASKVLDRMKKRGFEPDVVTYNIL--IGNFCGR 194

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
            RL + A+ V+ ++ + + +P  I Y  +I     +G +  A +L+  M    L PD  T
Sbjct: 195 GRL-DLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYT 253

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  ++ G C  G L+ A      + ++GC A +  Y+ LL  +   G  E   +L+ +M 
Sbjct: 254 YNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDML 313

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            +G  C PN +TY+++I   C  G + EA  +L  M+    AP+  +   LI   C EG 
Sbjct: 314 VKG--CEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGK 371

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK--------------- 366
           +D A + +D +++GG +     Y+S++  L +     EA  +F K               
Sbjct: 372 VDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNT 431

Query: 367 --------------------MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI-EKI 405
                               ML++G+ PD +  + +I  LC  G V +   L  D+ E  
Sbjct: 432 LFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESE 491

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               +V S  ++ +LLGLC+    ++A ++   M+ +
Sbjct: 492 KCQPTVIS--YNTVLLGLCKVQRIIDAIEVLAAMVNE 526



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 36/290 (12%)

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C + + +++    + M   G   +++  + L+ G   +  +E+A++++  +EK G    P
Sbjct: 88  CKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHG---KP 144

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +V  Y +VI  FC    +  A  +LDRM+  G  P+ VT + LI  FC  G LD A +++
Sbjct: 145 DVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVM 204

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           D+++      +   Y+ L+   +    + EA KL  +ML+ G++PD    +V++  +C  
Sbjct: 205 DQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKE 264

Query: 390 GQVLEGFCLYEDIEKIGFLSSVD----------------------SDI-----------H 416
           G +   F     I K G ++ V                       SD+           +
Sbjct: 265 GMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITY 324

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
           S L+  LCR     EA  + + M +K +   G   D ++  L + G  +L
Sbjct: 325 STLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDL 374



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 110/216 (50%), Gaps = 4/216 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   ++ +EA  VL+ M E  L PD   Y+ +I   C +G +  A E +  M   
Sbjct: 327 LITALCRDGKI-DEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISG 385

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PDI++Y S++   C  G  ++A  +F+ +   GC  N  +Y+ L   +   G   RA
Sbjct: 386 GHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRA 445

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL-DRMEALGCAPNRVTISTL 312
           L ++ EM   G D  P+ +TY S+I   C  G++ +A+ +L D  E+  C P  ++ +T+
Sbjct: 446 LGMILEMLSNGID--PDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTV 503

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           + G C    + +A +++  +V  G + +   Y+ L+
Sbjct: 504 LLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLI 539



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N    +++ E   E GC  +      +F     +     A+ ++ +M    + PD I YN
Sbjct: 406 NADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYN 465

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLY------PDIITYVSMIKGFCNAGRLEDACGLF 222
           ++I   C  G +  A EL     L+D++      P +I+Y +++ G C   R+ DA  + 
Sbjct: 466 SLISCLCRDGLVDQAIEL-----LVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVL 520

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
             M   GC  N   Y+ L+ GI   G    A+EL
Sbjct: 521 AAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMEL 554


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 159/302 (52%), Gaps = 5/302 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   + + A+ V+  M +    PD   YN V+   C+ G +  A  ++  M      P
Sbjct: 296 LCQNDHVGH-ALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLP 354

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI T+ ++I   C   RLE+A  L + +   G + ++  ++ L++ +C++G    AL L 
Sbjct: 355 DITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLF 414

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM+  G  C+P+ VTY ++I   C  G + +AL +L  ME+ GC  + +T +T+I G C
Sbjct: 415 EEMKNSG--CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 472

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +  ++EA ++ D++   G   +   +++L+  L + K++ +A +L ++M++ G++P+ +
Sbjct: 473 KKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNI 532

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + ++   C  G + +   + E +   GF   VD   +  L+ GLC+   +  A K+ R
Sbjct: 533 TYNSILTHYCKQGDIKKAADILETMTANGF--EVDVVTYGTLINGLCKAGRTQVALKVLR 590

Query: 438 FM 439
            M
Sbjct: 591 GM 592



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 143/301 (47%), Gaps = 3/301 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+      +G    V    ++ N   K    + A+ +  +M      PD + YN +I  
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G +  A +L+K M         ITY ++I G C   R+E+A  +F  M   G + N
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            + ++ L+DG+C+   ++ A EL+ +M  EG    PN +TY S++  +C +G +K+A  I
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFELINQMISEG--LQPNNITYNSILTHYCKQGDIKKAADI 553

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L+ M A G   + VT  TLI G C  G    A +++  +   G   +   Y+ ++  L R
Sbjct: 554 LETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFR 613

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIGFLSSVD 412
              +++A  LF +M   G  PD L   ++ R LC  GG + E F    ++   GF+    
Sbjct: 614 RNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFS 673

Query: 413 S 413
           S
Sbjct: 674 S 674



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 158/312 (50%), Gaps = 6/312 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM-WVLRKM-PEFDLRPDTIIYNNVIRL 173
           +V   + EG  V + ++    +  E  +L ++A+  +L ++ P F ++ DT++YN+++ +
Sbjct: 96  LVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNV 155

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             E   M   + +   MG   + PD++T+ +++K  C A ++  A  + + M   G A +
Sbjct: 156 LVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPD 215

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              ++ L+ G    GS+E AL +   M + G  CS   VT   +I  +C  G +++ALG 
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMG--CSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           + +  A G  P+++T +T + G C   ++  A +++D +V  G       Y+ +V  L +
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             +L+EA+ + ++M+  G  PD    + +I  LC G ++ E   L   +   G   S D 
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGV--SPDV 391

Query: 414 DIHSVLLLGLCR 425
              ++L+  LC+
Sbjct: 392 YTFNILINALCK 403



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 171/386 (44%), Gaps = 41/386 (10%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           ++E+   E     +K   V FN     LC +A     A+ +L +M    + PD   +  +
Sbjct: 164 LLESVYSEMGARGIKPDVVTFNTLMKALC-RAHQVRTAVIMLEEMSSRGVAPDETTFTTL 222

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           ++ F E+G + AA  +   M  +      +T   +I G+C  GR+EDA G  +     G 
Sbjct: 223 MQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF 282

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             + + Y+  ++G+C+   +  AL+++  M +EG D  P+V TY  V+   C  G ++EA
Sbjct: 283 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHD--PDVFTYNIVVNCLCKNGQLEEA 340

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
            GIL++M   GC P+  T +TLI   C    L+EA  L  +V   G       ++ L+  
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG---- 406
           L +      A +LF +M  SG  PD +  + +I  LC  G++ +   L +D+E  G    
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 407 ---FLSSVDS-----------------DIHSV---------LLLGLCRKNHSVEAAKLAR 437
              + + +D                  D+  +         L+ GLC+     +A +L  
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 520

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGD 463
            M+ + +       + I+ H  K GD
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGD 546


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 159/302 (52%), Gaps = 5/302 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   + + A+ V+  M +    PD   YN V+   C+ G +  A  ++  M      P
Sbjct: 296 LCQNDHVGH-ALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLP 354

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI T+ ++I   C   RLE+A  L + +   G + ++  ++ L++ +C++G    AL L 
Sbjct: 355 DITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLF 414

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM+  G  C+P+ VTY ++I   C  G + +AL +L  ME+ GC  + +T +T+I G C
Sbjct: 415 EEMKNSG--CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 472

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +  ++EA ++ D++   G   +   +++L+  L + K++ +A +L ++M++ G++P+ +
Sbjct: 473 KKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNI 532

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + ++   C  G + +   + E +   GF   VD   +  L+ GLC+   +  A K+ R
Sbjct: 533 TYNSILTHYCKQGDIKKAADILETMTANGF--EVDVVTYGTLINGLCKAGRTQVALKVLR 590

Query: 438 FM 439
            M
Sbjct: 591 GM 592



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 143/301 (47%), Gaps = 3/301 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+      +G    V    ++ N   K    + A+ +  +M      PD + YN +I  
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G +  A +L+K M         ITY ++I G C   R+E+A  +F  M   G + N
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            + ++ L+DG+C+   ++ A EL+ +M  EG    PN +TY S++  +C +G +K+A  I
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFELINQMISEG--LQPNNITYNSILTHYCKQGDIKKAADI 553

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L+ M A G   + VT  TLI G C  G    A +++  +   G   +   Y+ ++  L R
Sbjct: 554 LETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFR 613

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIGFLSSVD 412
              +++A  LF +M   G  PD L   ++ R LC  GG + E F    ++   GF+    
Sbjct: 614 RNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFS 673

Query: 413 S 413
           S
Sbjct: 674 S 674



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 171/386 (44%), Gaps = 41/386 (10%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           ++E+   E     +K   V FN     LC +A     A+ +L +M    + PD   +  +
Sbjct: 164 LLESVYSEMGARGIKPDVVTFNTLMKALC-RAHQVRTAVLMLEEMSSRGVAPDETTFTTL 222

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           ++ F E+G + AA  +   M  +      +T   +I G+C  GR+EDA G  +     G 
Sbjct: 223 MQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF 282

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             + + Y+  ++G+C+   +  AL+++  M +EG D  P+V TY  V+   C  G ++EA
Sbjct: 283 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHD--PDVFTYNIVVNCLCKNGQLEEA 340

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
            GIL++M   GC P+  T +TLI   C    L+EA  L  +V   G       ++ L+  
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG---- 406
           L +      A +LF +M  SG  PD +  + +I  LC  G++ +   L +D+E  G    
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 407 ---FLSSVDS-----------------DIHSV---------LLLGLCRKNHSVEAAKLAR 437
              + + +D                  D+  +         L+ GLC+     +A +L  
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELIN 520

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGD 463
            M+ + +       + I+ H  K GD
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGD 546



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 158/312 (50%), Gaps = 6/312 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM-WVLRKM-PEFDLRPDTIIYNNVIRL 173
           +V   + EG  V + ++    +  E  +L ++A+  +L ++ P F ++ DT++YN+++ +
Sbjct: 96  LVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNV 155

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             E   M   + +   MG   + PD++T+ +++K  C A ++  A  + + M   G A +
Sbjct: 156 LVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPD 215

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              ++ L+ G    GS+E AL +   M + G  CS   VT   +I  +C  G +++ALG 
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMG--CSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           + +  A G  P+++T +T + G C   ++  A +++D +V  G       Y+ +V  L +
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             +L+EA+ + ++M+  G  PD    + +I  LC G ++ E   L   +   G   S D 
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGV--SPDV 391

Query: 414 DIHSVLLLGLCR 425
              ++L+  LC+
Sbjct: 392 YTFNILINALCK 403


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 222/458 (48%), Gaps = 29/458 (6%)

Query: 25  HFTTA-SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIW 83
           H+TTA S  +  ++ L      IE    T+   ++  C ++++   F   S +G  F + 
Sbjct: 91  HYTTAISLVKHIFSSL-----GIEADTITLNIVINCLCRLKLVAFGF---SVLGTMFKL- 141

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKA 142
             L+ +    + + N  C    ++ N +  + +V+  ++    + V    V+ N LC+  
Sbjct: 142 -GLEPTVMTLTALINGLC----VQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTG 196

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
                  W LRKM E + +P+ ++Y+ ++   C+ G +  A  L   M    + P+++TY
Sbjct: 197 DTLAAVEW-LRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTY 255

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
             +I+G CN GR ++   L   M + G   +L   + L+D  C+ G + +A  ++G M  
Sbjct: 256 ACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMIL 315

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    P+V TY S+I I+C +  M EA+ +   M + GC P+ V  ++LI G+C + N+
Sbjct: 316 TGE--GPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNI 373

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           ++   L++++   G V     +++L+    +  R   A++LF  M   G  P+   C+V+
Sbjct: 374 NKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVI 433

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVEAAKLARFML 440
           +  LC G  + E   L E +EK    S++D +  I+S+LL G+C       A +L   + 
Sbjct: 434 LDGLCKGNLLSEAVSLAEAMEK----SNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLP 489

Query: 441 KKRIWLQGPYVDKIVEHLKKSGD----EELITNLPKIG 474
            K + +       +++ L K G     E+L+ N+ + G
Sbjct: 490 GKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENG 527



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 153/337 (45%), Gaps = 4/337 (1%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           R+K   + I  V   +   G       + ++ N   + +L      VL  M +  L P  
Sbjct: 88  RLKHYTTAISLVKHIFSSLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTV 147

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           +    +I   C +G++  A  L+  M  +    D+ TY  +I G C  G    A    + 
Sbjct: 148 MTLTALINGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRK 207

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+      N+V YS ++DG+C+ G +  AL L  EM  +G    PN+VTY  +IQ  C  
Sbjct: 208 MEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKG--VRPNLVTYACLIQGLCNF 265

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G  KE   +LD M  +G   +  T++ L+  FC EG + +A  +I  ++  G       Y
Sbjct: 266 GRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTY 325

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +SL+       ++ EA ++F  M++ G  PD +  + +I   C    + +   L E++ K
Sbjct: 326 NSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAK 385

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +GF+  V +   + L+ G C+    + A +L   M K
Sbjct: 386 MGFVPDVVT--WTTLIGGFCQAGRPLAAKELFLNMHK 420



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 158/334 (47%), Gaps = 6/334 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   R   E   +L +M +  +R D    N ++  FC++G ++ A  ++  M L 
Sbjct: 258 LIQGLCNFGRW-KETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILT 316

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ TY S+I  +C   ++ +A  +F +M   GC  ++V +++L+ G C+  ++ + 
Sbjct: 317 GEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKV 376

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + LL EM K G    P+VVT+T++I  FC  G    A  +   M   G  PN  T + ++
Sbjct: 377 MHLLEEMAKMG--FVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVIL 434

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C    L EA  L + +       +   YS L+  +    +L  A +LFS +   G++
Sbjct: 435 DGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQ 494

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            +    ++MI+ LC  G + +   L  ++E+ G L   D+  ++V + GL  K     + 
Sbjct: 495 INVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLP--DNCTYNVFVQGLLTKKEIARSI 552

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKS-GDEEL 466
           K    M  K   +     +  + +L  + GD  +
Sbjct: 553 KYLTIMRDKGFSVDAATTEITINYLSTNEGDTRI 586



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 2/222 (0%)

Query: 95  FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           F YN    +  ++   +  + V       GC+  + +   + +   K +  N+ M +L +
Sbjct: 323 FTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEE 382

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M +    PD + +  +I  FC+ G  +AA EL   M      P++ T   ++ G C    
Sbjct: 383 MAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNL 442

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L +A  L + M++     N+V YS LLDG+C  G +  A EL   +  +G     NV TY
Sbjct: 443 LSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKG--LQINVYTY 500

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           T +I+  C +G + +A  +L  ME  GC P+  T +  ++G 
Sbjct: 501 TIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGL 542



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V +++   VI +   K  L +EA+ +   M + +L  + +IY+ ++   C  G + AA
Sbjct: 422 GQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAA 481

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            EL   +    L  ++ TY  MIKG C  G L+ A  L   M+ +GC  +   Y+  + G
Sbjct: 482 WELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQG 541

Query: 244 ICRLGSMERALELLGEMEKEG 264
           +     + R+++ L  M  +G
Sbjct: 542 LLTKKEIARSIKYLTIMRDKG 562


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 166/347 (47%), Gaps = 15/347 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG----------DMIAA 183
           V+  +CE+    +E + +LRK+P F   PD + YN V++  C             +M+  
Sbjct: 184 VVSAICEQG-CVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRV 242

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            E +  M      PD+  Y ++I G C  G  E A  +   M  +G   N+V Y+ +L G
Sbjct: 243 HEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKG 302

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +C     E A +LL EM +E  DC  + VT+  ++  FC  G++   + +L++M   GC 
Sbjct: 303 LCSAERWEEAEDLLAEMFQE--DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCI 360

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ +T +T+I GFC EG +DEA  L+  + A G   +   Y+ ++  L R +R  +A++L
Sbjct: 361 PDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQEL 420

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
            S M+  G  P+ +  + +I  +C  G   +   L + +   G   S D   +S ++ GL
Sbjct: 421 ISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNG--CSPDLISYSTVIDGL 478

Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            +   + EA +L   M+ K I         +   L + G  + I  +
Sbjct: 479 GKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQM 525



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 169/360 (46%), Gaps = 45/360 (12%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKAR--LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
           E GC   ++M   I + +C+     +AN+   +L +MP + L+P+ + YN V++  C   
Sbjct: 251 EHGCTPDLRMYATIIDGICKDGHHEVAND---ILSRMPSYGLKPNVVCYNTVLKGLCSAE 307

Query: 179 DMIAADELMKGM----------------------GLID-------------LYPDIITYV 203
               A++L+  M                      GL+D               PD+ITY 
Sbjct: 308 RWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYT 367

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++I GFC  G +++A  L K M   GC  N ++Y+ +L G+CR      A EL+  M ++
Sbjct: 368 TVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQ 427

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G  C PN VT+ ++I   C KG+ ++A+ +L +M   GC+P+ ++ ST+I G    G  +
Sbjct: 428 G--CLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE 485

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           EA +L++ ++  G   +   YSS+   L R  R  +  ++F  +  + V+ D    + +I
Sbjct: 486 EALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVI 545

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
             LC   +       +  +   G +   +   +++L+ GL  +    EA  L   +  +R
Sbjct: 546 SSLCKRWETDRAIDFFAYMVSNGCMP--NESTYTILIRGLASEGLVREAQDLLSELCSRR 603



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 139/281 (49%), Gaps = 2/281 (0%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           D++    +E C +      ++ +   +  L +  + +L +M E    PD I Y  VI  F
Sbjct: 314 DLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGF 373

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C++G +  A  L+K M      P+ I+Y  ++KG C A R  DA  L   M + GC  N 
Sbjct: 374 CKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNP 433

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V ++ L++ +C+ G  E+A+ELL +M   G  CSP++++Y++VI      G  +EAL +L
Sbjct: 434 VTFNTLINFMCKKGLAEQAIELLKQMLVNG--CSPDLISYSTVIDGLGKAGKTEEALELL 491

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           + M   G  PN +  S++      EG  D+  Q+ D +      S    Y++++  L + 
Sbjct: 492 NVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKR 551

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
                A   F+ M+++G  P+    +++IR L   G V E 
Sbjct: 552 WETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREA 592



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 2/255 (0%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +I+++E   E GC+  V     + N   K  L +EA+ +L+ M     +P+TI Y  V++
Sbjct: 347 VIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLK 406

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C     + A EL+  M      P+ +T+ ++I   C  G  E A  L K M  +GC+ 
Sbjct: 407 GLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSP 466

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L++YS ++DG+ + G  E ALELL  M  +G   +PN + Y+S+      +G   + + 
Sbjct: 467 DLISYSTVIDGLGKAGKTEEALELLNVMINKG--ITPNTIIYSSMASALSREGRTDKIIQ 524

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D ++      +    + +I   C     D A      +V+ G + +   Y+ L+  L 
Sbjct: 525 MFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLA 584

Query: 353 RTKRLKEAEKLFSKM 367
               ++EA+ L S++
Sbjct: 585 SEGLVREAQDLLSEL 599



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 49/369 (13%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V++     GC  +  M  VI     +      A+  L+ +       D+   N V+  
Sbjct: 128 LTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSA 187

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR------ 227
            CE+G +    EL++ +      PDI++Y +++KG C A R +D   L   M R      
Sbjct: 188 ICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALS 247

Query: 228 ----HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
               HGC  +L  Y+ ++DGIC+ G  E A ++L  M   G    PNVV Y +V++  C 
Sbjct: 248 QMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYG--LKPNVVCYNTVLKGLCS 305

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
               +EA  +L  M    C  + VT + L+  FC  G +D   +L+++++  G +     
Sbjct: 306 AERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVIT 365

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y++++    +   + EA  L   M A G KP+ ++                         
Sbjct: 366 YTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTIS------------------------- 400

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
                       ++++L GLCR    V+A +L   M+++         + ++  + K G 
Sbjct: 401 ------------YTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGL 448

Query: 464 EELITNLPK 472
            E    L K
Sbjct: 449 AEQAIELLK 457



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 125/270 (46%), Gaps = 19/270 (7%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           S ++  +I +LC   R A+ A    R +         + YN +I  +C  G + AA  L 
Sbjct: 44  SGRLSALIRSLCAAGRTADAA----RALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLA 99

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
                + + P+  TY  +++  C  G + DA  +   M   GCAA       +L+  CR 
Sbjct: 100 A---AVPVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRG 156

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    A+  L  +  +G  C+ +      V+   C +G + E + +L ++ + GC P+ V
Sbjct: 157 GGFRSAVRALQVLHAKG--CTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIV 214

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVV----AGGSVSSGGC------YSSLVVELVRTKRL 357
           + + ++KG C+    D+  +L+ ++V    A   +   GC      Y++++  + +    
Sbjct: 215 SYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHH 274

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           + A  + S+M + G+KP+ +  + +++ LC
Sbjct: 275 EVANDILSRMPSYGLKPNVVCYNTVLKGLC 304



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 103/204 (50%), Gaps = 19/204 (9%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++I+  C AGR  DA    + +   G AA +VAY+A++ G CR G +  A  L   +   
Sbjct: 49  ALIRSLCAAGRTADAA---RALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP-- 103

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
                PN  TY  +++  C +G++ +AL +LD M   GCA        +++  C  G   
Sbjct: 104 ---VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFR 160

Query: 324 EAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKR-LKEAEKLFSKMLASGVKPDGLACSV 381
            A + +  + A G ++ SG C  +LVV  +  +  + E  +L  K+ + G +PD ++ + 
Sbjct: 161 SAVRALQVLHAKGCTLDSGNC--NLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNA 218

Query: 382 MIRELCLGGQVLEGFCLYEDIEKI 405
           +++ LC+  +       ++D+E++
Sbjct: 219 VLKGLCMAKR-------WDDVEEL 235


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 157/293 (53%), Gaps = 6/293 (2%)

Query: 143 RLA-NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           RLA + +  ++R++ E    P+   +N VI   C++G++  A  L   M  +   PD++T
Sbjct: 166 RLARDRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVT 225

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           + S+I G+   G L++   L + M+R GC A++V Y+AL++  C+ G ME A      M+
Sbjct: 226 FNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK 285

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           +EG     NVVT+++ +  FC +G+++EA+ +  +M   G A N  T + LI G C  G 
Sbjct: 286 REG--VMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           LD+A  L+D++V  G   +   Y+ LV  L + +++ EAE +   M  +GV+ + L  + 
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           +I    +     +   L  +++  G    +D  ++  L+ GLC   H ++ AK
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGL--ELDISLYGALIQGLCNV-HKLDEAK 453



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 40/334 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC++  LA EA  +  +M E    PD + +N++I  + + G++   ++L++ M   
Sbjct: 194 VIDFLCKEGELA-EARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRS 252

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA----------------- 236
               D++TY ++I  FC  GR+E A G F  MKR G  AN+V                  
Sbjct: 253 GCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREA 312

Query: 237 ------------------YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
                             Y+ L+DG C+ G ++ A+ LL EM ++G     NVVTYT ++
Sbjct: 313 MKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG--VPLNVVTYTVLV 370

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C +  + EA  +L  ME  G   N +  +TLI G  +  N ++A  L+ ++   G  
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLE 430

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y +L+  L    +L EA+ L +KM  SG++P+ +  + M+      G+V E   +
Sbjct: 431 LDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAM 490

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            + I   GF  +V +  +  L+ GLC+     EA
Sbjct: 491 LQKILDSGFQPNVIT--YCALIDGLCKAGSIDEA 522



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 168/360 (46%), Gaps = 18/360 (5%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKM 155
           Y +  E+  ++Q       +VE  +  GC   V     + N  C+  R+   A      M
Sbjct: 233 YGKCGELDEVEQ-------LVEEMRRSGCKADVVTYNALINCFCKFGRMET-AYGYFAAM 284

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               +  + + ++  +  FC++G +  A +L   M +  +  +  TY  +I G C AGRL
Sbjct: 285 KREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRL 344

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           +DA  L   M R G   N+V Y+ L+DG+C+   +  A ++L  MEK G     N + YT
Sbjct: 345 DDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAG--VRANELLYT 402

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           ++I         ++ALG+L  M+  G   +      LI+G C    LDEA  L+ K+   
Sbjct: 403 TLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES 462

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   Y++++    ++ ++ EA  +  K+L SG +P+ +    +I  LC  G + E 
Sbjct: 463 GLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEA 522

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
              +  +  +G   +V +  ++ L+ GLC+     EA +L   M+ K     G  +DK+V
Sbjct: 523 ISHFNKMRDLGLDPNVQA--YTALVDGLCKNGCLNEAVQLFNEMVHK-----GMSLDKVV 575



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 136/270 (50%), Gaps = 3/270 (1%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           + +A+ +L +M    L  D  +Y  +I+  C    +  A  L+  M    L P+ I Y +
Sbjct: 414 SEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           M+     +G++ +A  + + +   G   N++ Y AL+DG+C+ GS++ A+    +M   G
Sbjct: 474 MMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLG 533

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
            D  PNV  YT+++   C  G + EA+ + + M   G + ++V  + L+ G+  +GNL +
Sbjct: 534 LD--PNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHD 591

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A+ L  K++  G      CY+  +        + EA ++FS+M+  G+ PD    + +I 
Sbjct: 592 AFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLIS 651

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
           +    G + E   L +++E++   S  DSD
Sbjct: 652 KYQKLGNLEEAISLQDEMERV-LPSCTDSD 680



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 138/282 (48%), Gaps = 4/282 (1%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM-KVIFNLCEKARLA 145
           ++  R +  +Y        + +N    + ++   K +G  + + +   +I  LC   +L 
Sbjct: 391 KAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKL- 449

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA  +L KM E  L P+ IIY  ++    + G +  A  +++ +      P++ITY ++
Sbjct: 450 DEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCAL 509

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C AG +++A   F  M+  G   N+ AY+AL+DG+C+ G +  A++L  EM  +G 
Sbjct: 510 IDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKG- 568

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             S + V YT+++  +  +G + +A  +  +M   G   +    +  I GFC    + EA
Sbjct: 569 -MSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEA 627

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            ++  +++  G       Y+ L+ +  +   L+EA  L  +M
Sbjct: 628 REVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEM 669


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 194/410 (47%), Gaps = 40/410 (9%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           L   Y +++ M +  C++  +K    +++++     E+GC  ++    VI     +ARL 
Sbjct: 212 LPDVYTYTN-MISAHCKVGNVKDAKRVLLEM----GEKGCSPNLVTYNVIIGGLCRARLL 266

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+ + R M +  L PD   Y+ +I  FC +     A  ++  M  + L P+ ITY ++
Sbjct: 267 DEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNAL 326

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG- 264
           I GF   G +E A  +   M   G  ANL+ ++ LL+G+C+ G ME+ALE++ EM ++G 
Sbjct: 327 IDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGV 386

Query: 265 ------------GDC--------------------SPNVVTYTSVIQIFCGKGMMKEALG 292
                       G C                    +P V+TY+ +I   C  G ++    
Sbjct: 387 EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNA 446

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           IL  M   G  PN V  +TL+     EG ++E+  +++++   G +    CY+SL++   
Sbjct: 447 ILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFC 506

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           + KR++EA     +ML   ++P+       I      G++      + ++   G L +V 
Sbjct: 507 KAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNV- 565

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
             I++ L+ G C++ +  EA  + RF+L +R+         ++  L ++G
Sbjct: 566 -GIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNG 614



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 155/325 (47%), Gaps = 40/325 (12%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA  +  ++ E  L P+   YN++I   C++G++  A +L++ M +  + PDI+TY  +
Sbjct: 617 HEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNIL 676

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C AG +E A  LF  ++  G   N V Y+A++DG C+  +   A +LL EM   G 
Sbjct: 677 IDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG- 735

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+   Y  ++   C +   ++AL +   M   G A + V+ +TLI+G+C  G L EA
Sbjct: 736 -VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGKLQEA 793

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK----------------------- 362
             L+++++    + +   Y+SL+    +   + EA++                       
Sbjct: 794 NHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHG 853

Query: 363 ------------LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
                       LF +M+A G++PD +   VMI   C  G V+E   L ++I   G   S
Sbjct: 854 YHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMS 913

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKL 435
           V +  +  L+  LC+K    E  KL
Sbjct: 914 VAA--YDALIQALCKKEEFFEVLKL 936



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 154/285 (54%), Gaps = 16/285 (5%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL------MKGMGLIDLYPDII 200
           EA+ V      F+ RP  +  N+++      GD++  +++        GM    + PD+ 
Sbjct: 163 EAVNVFLGPKNFEFRPSLLSCNSLL------GDLLKGNKVELFWKVFDGMCAHKVLPDVY 216

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY +MI   C  G ++DA  +   M   GC+ NLV Y+ ++ G+CR   ++ A+EL   M
Sbjct: 217 TYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSM 276

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G    P++ TY  +I  FC +   +EA  +L  M  +G  P  +T + LI GF  +G
Sbjct: 277 VDKG--LVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQG 334

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           ++++A+++ D++VA G  ++   +++L+  + +  ++++A ++  +M+  GV+PD    S
Sbjct: 335 DIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYS 394

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           ++I   C G  +   F L ++++K     +V +  +SV++ GLCR
Sbjct: 395 LLIEGHCRGQNMARAFELLDEMKKRKLAPTVLT--YSVIINGLCR 437



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 152/313 (48%), Gaps = 7/313 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+   I++  ++  D+        CV    M+      C K++    A  +L +M    +
Sbjct: 681 CKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVD---GYC-KSKNPTAAFQLLEEMLLRGV 736

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD  IYN ++   C++     A +L + M L   +   +++ ++I+G+C +G+L++A  
Sbjct: 737 PPDAFIYNVILNFCCKEEKFEKALDLFQEM-LEKGFASTVSFNTLIEGYCKSGKLQEANH 795

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L + M       N V Y++L+D  C+ G M  A  L  EM++   +  P   TYTS++  
Sbjct: 796 LLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQER--NVMPTAKTYTSLLHG 853

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +   G M E   + + M A G  P+++T   +I  +C EGN+ EA +L D+++  G   S
Sbjct: 854 YHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMS 913

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y +L+  L + +   E  KL +++  SG +     CSV+ R   + G + E   +  
Sbjct: 914 VAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLR 973

Query: 401 DIEKIGFLSSVDS 413
            + K G++S+  S
Sbjct: 974 SMVKFGWVSNTTS 986



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 160/344 (46%), Gaps = 23/344 (6%)

Query: 99  RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           R   M+ +K N  +   ++ A+ +EG V             E++R+      +L +M E 
Sbjct: 449 REMVMNGLKPNAVVYTTLMTAHAKEGRV-------------EESRM------ILERMREQ 489

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            + PD   YN++I  FC+   M  A   +  M    L P+  TY + I G+  AG +E A
Sbjct: 490 GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIA 549

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
              F  M   G   N+  Y+AL++G C+ G++  A  +   +         +V TY+ +I
Sbjct: 550 DRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSR--RVLQDVQTYSVLI 607

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                 G M EA GI   ++  G  PN  T ++LI G C +GN+D+A QL++++   G  
Sbjct: 608 HGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGIN 667

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y+ L+  L +   ++ A+ LF  +   G+ P+ +  + M+   C        F L
Sbjct: 668 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 727

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            E++   G     D+ I++V+L   C++    +A  L + ML+K
Sbjct: 728 LEEMLLRGV--PPDAFIYNVILNFCCKEEKFEKALDLFQEMLEK 769



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 127/274 (46%), Gaps = 3/274 (1%)

Query: 94   SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
            +F+YN        ++     +D+ +   E+G   +V    +I   C+  +L  EA  +L 
Sbjct: 740  AFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKL-QEANHLLE 798

Query: 154  KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            +M E    P+ + Y ++I   C+ G M  A  L   M   ++ P   TY S++ G+ N G
Sbjct: 799  EMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIG 858

Query: 214  RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
             + +   LF+ M   G   + + Y  ++D  CR G++  A +L  E+  +G   S  V  
Sbjct: 859  NMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMS--VAA 916

Query: 274  YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
            Y ++IQ  C K    E L +L+ +   G      T S + +GF + GN+DEA +++  +V
Sbjct: 917  YDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMV 976

Query: 334  AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
              G VS+      LV         ++++ L  +M
Sbjct: 977  KFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 1010



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 123/252 (48%), Gaps = 12/252 (4%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+ + +  ++  +   G L +A  +F   K      +L++ ++LL  + +   +E   ++
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 202

Query: 257 LGEMEKEGGDCS----PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
              M      C+    P+V TYT++I   C  G +K+A  +L  M   GC+PN VT + +
Sbjct: 203 FDGM------CAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVI 256

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G C    LDEA +L   +V  G V     Y  L+      KR +EA+ +  +M+  G+
Sbjct: 257 IGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGL 316

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           KP+ +  + +I      G + + F + +++   G  +++   I + LL G+C+     +A
Sbjct: 317 KPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANL--IIWNTLLNGVCKAGKMEKA 374

Query: 433 AKLARFMLKKRI 444
            ++ + M++K +
Sbjct: 375 LEIMQEMMEKGV 386


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 138/256 (53%), Gaps = 2/256 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  +   GDM     L   M    + PD+ TY  +I 
Sbjct: 144 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLIN 203

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  +F  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 204 GLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 261

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 262 XPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFE 321

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L + +R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 322 HRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFC 381

Query: 388 LGGQVLEGFCLYEDIE 403
             G V  G  L ++++
Sbjct: 382 KKGDVWTGSKLLKEMQ 397



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 127/269 (47%), Gaps = 5/269 (1%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+++ L++G  RLG M+   
Sbjct: 121 YPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGF 180

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M +A  + D M   G  PN VT +TLI 
Sbjct: 181 RLKNAMHASG--VQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLID 238

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++         Y++L+  L +   LK+A  L  +M   G+KP
Sbjct: 239 GHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKP 298

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  + +I   C  G +   F   + +  I     +D   ++ L+ GLC++   ++A K
Sbjct: 299 DKITYTTLIDGCCKEGDLETAFEHRKRM--IQEXIRLDDVAYTALISGLCQEERYLDAEK 356

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           + R ML   +         I+    K GD
Sbjct: 357 VLREMLSVGLKPDTGTYTMIINEFCKKGD 385



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 8/216 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++    +G V + V    +I   C+  
Sbjct: 189 SGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLD----KGLVPNGVTFTTLIDGHCKNG 244

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+  M +  L PD ITY
Sbjct: 245 RV-DLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITY 303

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+      A ++L EM  
Sbjct: 304 TTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLREMLS 363

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            G    P+  TYT +I  FC KG +     +L  M+
Sbjct: 364 VG--LKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 397



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 103/199 (51%), Gaps = 3/199 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M +  L P+ + +  +I   C+ G +  A E+ K M   
Sbjct: 201 LINGLCKESKM-DDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 259

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L+ A  L   M   G   + + Y+ L+DG C+ G +E A
Sbjct: 260 SLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETA 319

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E    M +E      + V YT++I   C +    +A  +L  M ++G  P+  T + +I
Sbjct: 320 FEHRKRMIQEX--IRLDDVAYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMII 377

Query: 314 KGFCVEGNLDEAYQLIDKV 332
             FC +G++    +L+ ++
Sbjct: 378 NEFCKKGDVWTGSKLLKEM 396



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 111/268 (41%), Gaps = 43/268 (16%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    +  +L+
Sbjct: 54  DIYVFSGLITAYLESGFLRDAXECYRLTREHKFWVPFDTCRKVLEHLMKL----KYFKLV 109

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC +G +  A  + + +   G  P+ V+ +TL+ G
Sbjct: 110 WGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNG 169

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G++DE +                             RLK A      M ASGV+PD
Sbjct: 170 YIRLGDMDEGF-----------------------------RLKNA------MHASGVQPD 194

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
               SV+I  LC   ++ +   +++++   G +   +    + L+ G C+      A ++
Sbjct: 195 VYTYSVLINGLCKESKMDDANEMFDEMLDKGLVP--NGVTFTTLIDGHCKNGRVDLAMEI 252

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            + ML + +       + ++  L K GD
Sbjct: 253 YKQMLSQSLXPDLITYNTLIYGLCKKGD 280


>gi|168040538|ref|XP_001772751.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675976|gb|EDQ62465.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 526

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 165/361 (45%), Gaps = 6/361 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++  K +G  V+  +   +     KA    +++     M ++D +P T++YN++I +  
Sbjct: 21  LLDDMKRDGHRVTPTIFLGVIRSYVKANQIEDSLKTFHAMDKYDCKPTTLVYNSMIDILR 80

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             GD + A++L + M      PD ITY  MI     AG ++ A  LF+ M R G  AN++
Sbjct: 81  TSGDYVQAEKLFRSMNPSSCAPDTITYTMMIDCMGKAGHIQAAFDLFQEMHRMGYKANVI 140

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS+L+  +C+ G +  A  LL  M   G  C+PN VTY  +I    G G          
Sbjct: 141 TYSSLIRSLCKAGRISEACNLLSGMRING--CNPNDVTYNGLIVGLGGAGQADLVCSYYK 198

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M++ G  PN  T + +I      G L EA+ L        S        S+V  L ++ 
Sbjct: 199 EMKSFGLIPNLPTQAVVISSLVRIGKLSEAHSLFQTAALKSSTFDFDVMKSVVGSLCKSN 258

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R +   K F     SG  P   ACSV+I  L   G V E  C+Y +  + G   S D   
Sbjct: 259 RCEVGFKFFQDAKKSGYVPSSGACSVLIYSLSKVGMVAEALCVYGESTRGGV--SPDLMA 316

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD-EELITN-LPKI 473
            + L   L ++     A  + RF+ K RI       +++V+ L K+   E++I+  LPK 
Sbjct: 317 LNALTNSLVKEEKLEAAIDVVRFINKHRIGDDAYAHERLVDLLCKTHRFEDVISQELPKQ 376

Query: 474 G 474
           G
Sbjct: 377 G 377



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 99/484 (20%), Positives = 182/484 (37%), Gaps = 94/484 (19%)

Query: 67  HRCFPSQSQMGIRFFIWA-ALQSSYRHSSFMYNRACEMSRIKQNPSIII-----DVVEAY 120
           HR  P+     IR ++ A  ++ S +    M    C+ + +  N  I I     D V+A 
Sbjct: 30  HRVTPTIFLGVIRSYVKANQIEDSLKTFHAMDKYDCKPTTLVYNSMIDILRTSGDYVQAE 89

Query: 121 K------EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           K         C        ++ +   KA     A  + ++M     + + I Y+++IR  
Sbjct: 90  KLFRSMNPSSCAPDTITYTMMIDCMGKAGHIQAAFDLFQEMHRMGYKANVITYSSLIRSL 149

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ G +  A  L+ GM +    P+ +TY  +I G   AG+ +  C  +K MK  G   NL
Sbjct: 150 CKAGRISEACNLLSGMRINGCNPNDVTYNGLIVGLGGAGQADLVCSYYKEMKSFGLIPNL 209

Query: 235 VAYSALLDGICRLGSMERA-----------------------------------LELLGE 259
              + ++  + R+G +  A                                    +   +
Sbjct: 210 PTQAVVISSLVRIGKLSEAHSLFQTAALKSSTFDFDVMKSVVGSLCKSNRCEVGFKFFQD 269

Query: 260 MEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            +K G     G CS  + + + V       GM+ EAL +       G +P+ + ++ L  
Sbjct: 270 AKKSGYVPSSGACSVLIYSLSKV-------GMVAEALCVYGESTRGGVSPDLMALNALTN 322

Query: 315 GFCVEGNL----------------DEAY---QLID--------------KVVAGGSVSSG 341
               E  L                D+AY   +L+D              ++   G   + 
Sbjct: 323 SLVKEEKLEAAIDVVRFINKHRIGDDAYAHERLVDLLCKTHRFEDVISQELPKQGFAPNV 382

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y+ L+ +L    R+ +A K F +M +    PD    +V+I  L   G+V     L+E 
Sbjct: 383 HLYNKLIYQLGEAGRINDALKTFERMCSESCYPDTRTYNVVINLLGGVGKVDLAHQLFEQ 442

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
           +++ G   ++ +  +++++  L R        KL R M+   I  +   +  +  H K S
Sbjct: 443 MKEKGCKPNLQT--YNIMVGHLVRAGRYQLGPKLCREMVANHIEPREGALKILQFHEKAS 500

Query: 462 GDEE 465
           G  +
Sbjct: 501 GGHD 504


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 153/291 (52%), Gaps = 8/291 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A+++  +M E    P+ +IYN +I   C+   +  A +L+  M +  + PD +TY S+I
Sbjct: 169 DALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLI 228

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G CN+GR +DA  +   M +     ++  ++AL+D   + G +  A EL  EM +   D
Sbjct: 229 SGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLD 288

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P++VTY+ +I   C    + EA  +   M + GC P+ VT S LI G+C    ++   
Sbjct: 289 --PDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGM 346

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L  ++   G V +   Y+ L+    R  +L  AE++F  M+  GV P+ +  +V++  L
Sbjct: 347 KLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGL 406

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKL 435
           C  G++ +   +  D++K    S +D+DI  +++++ G+C+     +A  L
Sbjct: 407 CDNGKIEKALVILADMQK----SGMDADIVTYNIIIRGMCKAGEVADAWDL 453



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 188/396 (47%), Gaps = 13/396 (3%)

Query: 61  CVIEVLHRCFPSQSQMGIRF-FIWAALQSSYRHSSFMY----NRACEMSRIKQNPSIIID 115
           C   +L  CF   SQ+ +   F+   ++  +      +    N  C   RI     +   
Sbjct: 117 CTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDR 176

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +VE   E   V+      +I  LC K++  + A+ +L +M    +RPD + YN++I   C
Sbjct: 177 MVEMGYEPNVVI---YNTIIDGLC-KSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLC 232

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G    A  ++  M   ++YPD+ T+ ++I      GR+ +A  L++ M R     ++V
Sbjct: 233 NSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIV 292

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS L+ G+C    ++ A ++ G M  +G  C P+VVTY+ +I  +C    ++  + +  
Sbjct: 293 TYSLLIYGLCMYSRLDEAEQMFGFMVSKG--CFPDVVTYSILINGYCKSKKVEHGMKLFC 350

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   G   N VT + LI+G+C  G L+ A ++   +V  G   +   Y+ L+  L    
Sbjct: 351 EMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNG 410

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           ++++A  + + M  SG+  D +  +++IR +C  G+V + + LY  +   G    + +  
Sbjct: 411 KIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWT-- 468

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV 451
           ++ ++LGL +K    EA  L R M +  I     YV
Sbjct: 469 YTAMMLGLYKKGLRGEADALFRKMKEDGILPNECYV 504



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 129/272 (47%), Gaps = 17/272 (6%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P I  +  ++       + +    L++ M+  G   NL   + LL+  CR   +  AL  
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           LG+M K G +  P++VT+ S++  FC    + +AL + DRM  +G  PN V  +T+I G 
Sbjct: 139 LGKMMKLGHE--PDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGL 196

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    +D A  L++++   G       Y+SL+  L  + R  +A ++ S M    + PD 
Sbjct: 197 CKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDV 256

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAK 434
              + +I      G++ E   LYE++ +     S+D DI  +S+L+ GLC  +   EA +
Sbjct: 257 FTFNALIDACVKEGRISEAEELYEEMIR----RSLDPDIVTYSLLIYGLCMYSRLDEAEQ 312

Query: 435 LARFMLKK---------RIWLQGPYVDKIVEH 457
           +  FM+ K          I + G    K VEH
Sbjct: 313 MFGFMVSKGCFPDVVTYSILINGYCKSKKVEH 344



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 131/290 (45%), Gaps = 39/290 (13%)

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L + M ++ +  ++ T   ++  FC   +L  A      M + G   ++V + +LL+G C
Sbjct: 103 LWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFC 162

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           R   +  AL +   M + G +  PNVV Y ++I   C    +  AL +L+RME  G  P+
Sbjct: 163 RGDRIYDALYMFDRMVEMGYE--PNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPD 220

Query: 306 RVTISTLIKGFCVEGNLDEAYQ-------------------LIDKVVAGGSVSSGG---- 342
            VT ++LI G C  G  D+A +                   LID  V  G +S       
Sbjct: 221 AVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYE 280

Query: 343 ------------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
                        YS L+  L    RL EAE++F  M++ G  PD +  S++I   C   
Sbjct: 281 EMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSK 340

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           +V  G  L+ ++ + G + +  +  ++VL+ G CR      A ++ ++M+
Sbjct: 341 KVEHGMKLFCEMSQRGVVRNTVT--YTVLIQGYCRAGKLNVAEEIFKWMV 388



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 111/269 (41%), Gaps = 43/269 (15%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  M++      +L+D+  LF  M +     ++  +S LL  I ++   +  + L  +M+
Sbjct: 49  YREMLRNGIRYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQ 108

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G     N+ T   ++  FC    +  AL  L +M  LG  P+ VT  +L+ GFC    
Sbjct: 109 MLG--IPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDR 166

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           + +A  + D++V  G   +   Y++++  L ++K++  A  L ++M   G++PD +    
Sbjct: 167 IYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVT--- 223

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
                                             ++ L+ GLC      +A ++   M K
Sbjct: 224 ----------------------------------YNSLISGLCNSGRWDDATRMVSCMTK 249

Query: 442 KRIWLQ----GPYVDKIVEHLKKSGDEEL 466
           + I+         +D  V+  + S  EEL
Sbjct: 250 REIYPDVFTFNALIDACVKEGRISEAEEL 278


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 167/337 (49%), Gaps = 5/337 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E GCV SV     + N   K    ++   V ++M    + P++  +N +  +FC+ GD+ 
Sbjct: 207 EVGCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVD 266

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
             ++ ++ M      PDI+TY ++I  +C  GRL+DA  L+++M R     +LV+Y+AL+
Sbjct: 267 KVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALM 326

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G+C+ G +  A +L   M   G   +P++V++ ++I  +C +G M+E+  +L  M   G
Sbjct: 327 NGLCKEGKVREAHQLFHRMIHRG--LNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSG 384

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P++VT   LI+G+  E  +  A  L+ ++   G   S   Y  L+V +    R   A+
Sbjct: 385 ICPDKVTCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAK 444

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
            L  ++   G  P     + +I  LC    + +   +  ++       S  +  +  L+ 
Sbjct: 445 SLLQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAIT--YKALIC 502

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
            LCR + S+EA  L   ML+  + L  P + + + H+
Sbjct: 503 CLCRTSRSMEAESLMEEMLQSGM-LPDPDICRALMHV 538



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 147/328 (44%), Gaps = 6/328 (1%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           D +E  +EEG    +     + +  C K RL ++A ++ R M   ++ PD + Y  ++  
Sbjct: 270 DFLERMEEEGFEPDIVTYNTLISCYCRKGRL-DDAFYLYRIMYRRNVLPDLVSYTALMNG 328

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C++G +  A +L   M    L PDI+++ ++I G+C  G++ ++  L   M   G   +
Sbjct: 329 LCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPD 388

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            V    L++G  +   +  AL L+ E+E+ G   S ++  Y  V    C +G    A  +
Sbjct: 389 KVTCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMV--SICEEGRPFAAKSL 446

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L R+   G  P     + LI+  C   ++ +A  +  ++       S   Y +L+  L R
Sbjct: 447 LQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCR 506

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           T R  EAE L  +ML SG+ PD   C  ++   C    + +   L +   K       DS
Sbjct: 507 TSRSMEAESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAK--EFQIFDS 564

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           + ++ L+   C    +    +L   MLK
Sbjct: 565 ESYNTLVKTYCEDADATRLMELQDRMLK 592



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 92/417 (22%), Positives = 176/417 (42%), Gaps = 61/417 (14%)

Query: 65  VLHRCFPSQSQMGIRFFIWA----ALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAY 120
           VL RC  S S   + FF W      LQ S ++  F+ +        K+    + ++++  
Sbjct: 97  VLLRC-QSDSISALTFFSWVKNDLGLQPSIQNYCFLVHILAWSKEFKEAMKFLTELIKLV 155

Query: 121 KEEG-----------CVVSVKMMKVIFNLCEKAR----LANEAMWVLRKMPEFDLRPDTI 165
           K+             C        VIF++  KA     +  E     RK+ E    P  I
Sbjct: 156 KDCSFNEDVFQTLLFCCQDCNWDPVIFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVI 215

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
             N ++    +   +    ++ K M  + ++P+  T+  +   FC  G ++      + M
Sbjct: 216 SCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERM 275

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
           +  G   ++V Y+ L+   CR G ++ A  L   M +   +  P++V+YT+++   C +G
Sbjct: 276 EEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRR--NVLPDLVSYTALMNGLCKEG 333

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            ++EA  +  RM   G  P+ V+ +TLI G+C EG +                       
Sbjct: 334 KVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKM----------------------- 370

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
                       +E+  L  +M+ SG+ PD + C V+I       +++    L  ++E+ 
Sbjct: 371 ------------RESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELERF 418

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV-DKIVEHLKKS 461
           G    + +DI+  L++ +C +     A  L +  + +R ++ G  + +K++E L KS
Sbjct: 419 GV--PISTDIYDYLMVSICEEGRPFAAKSLLQ-RISQRGYVPGVEIYNKLIESLCKS 472



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 22/219 (10%)

Query: 116 VVEAYKEEGCVVSVKMMKV-----------------IFNLCEKARLANEAMWVLRKMPEF 158
           ++E Y++E  +VS   + V                 + ++CE+ R    A  +L+++ + 
Sbjct: 395 LIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGR-PFAAKSLLQRISQR 453

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKG-MGLIDLYPDIITYVSMIKGFCNAGRLED 217
              P   IYN +I   C K D IA   L+K  MG  ++ P  ITY ++I   C   R  +
Sbjct: 454 GYVPGVEIYNKLIESLC-KSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSME 512

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  L + M + G   +     AL+   C+   + +A  LL    KE         +Y ++
Sbjct: 513 AESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAKEFQIFDSE--SYNTL 570

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           ++ +C        + + DRM  +G APN  T   +I G 
Sbjct: 571 VKTYCEDADATRLMELQDRMLKVGFAPNIQTFRQMIHGL 609



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 8/180 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM-KVIFNLCEKARLANEAMWVLRKMPEFD 159
           CE  R    P     +++   + G V  V++  K+I +LC+   +A +A+ V  +M   +
Sbjct: 435 CEEGR----PFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIA-DALLVKSEMGHRN 489

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++P  I Y  +I   C     + A+ LM+ M    + PD     +++  +C    +  A 
Sbjct: 490 IKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAE 549

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L +   +     +  +Y+ L+   C      R +EL   M K G   +PN+ T+  +I 
Sbjct: 550 TLLQTFAKEFQIFDSESYNTLVKTYCEDADATRLMELQDRMLKVGF--APNIQTFRQMIH 607


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 162/343 (47%), Gaps = 39/343 (11%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA   + A  +L  M      P+ I+Y+ +I  FC+ G + +A E+   M      P + 
Sbjct: 391 KAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVH 450

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY S+I      GRL+ A  +   M +  C  N+V Y+A++DG+CR+G  E+AL+LL  M
Sbjct: 451 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 510

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           E++G  CSPNVVTYT++I      G +  +L +  +M   GC+PN VT   LI   C  G
Sbjct: 511 EEKG--CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAG 568

Query: 321 NLDEAYQL---------------------------------IDKVVAGGSVSSGGCYSSL 347
            LD+A  L                                 ++++ + G+V     Y  L
Sbjct: 569 LLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGML 628

Query: 348 VVELVRTKRLKEAEKLFSKML--ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           +    +  RL+ A +L  +M+   S VK D    + +I+ LCL  QV E F LY ++ + 
Sbjct: 629 IDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRR 688

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
           GF+  +   +   L+ GL       EA +L   +  + +  QG
Sbjct: 689 GFVPEL--SVFVCLIKGLVEVKKWDEALQLCYGICHEGVNWQG 729



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC   ++  +A  + ++M    + PD   Y  +I  FC+ G +  A  L + M  
Sbjct: 228 KVITFLCHATKV-EKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRS 286

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   P ++TY ++I  +  A ++  A  +F  M   GC  N V Y AL+DG+C+ G++ +
Sbjct: 287 VGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISK 346

Query: 253 ALE----LLGEMEKEGGD----------CSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A E    L+G  +    D           +PNVVTY +++   C    +  A  +LD M 
Sbjct: 347 AFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAML 406

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           + GC PN +    LI GFC  G +D A ++  ++   G + S   Y+SL+  + +  RL 
Sbjct: 407 SSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLD 466

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ S+ML     P+ +  + MI  LC  G+  +   L   +E+ G
Sbjct: 467 LAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 514



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 140/291 (48%), Gaps = 18/291 (6%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  +  GC  +V     + +   KA+   +A  +  +M +   RP+ + Y  ++   C
Sbjct: 280 LFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLC 339

Query: 176 EKGDMIAADELM-KGMGLID---------------LYPDIITYVSMIKGFCNAGRLEDAC 219
           + G++  A E+  K +G  D               L P+++TY +++ G C A +++ A 
Sbjct: 340 KAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAH 399

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M   GC  N + Y AL+DG C+ G ++ A E+  +M K G    P+V TYTS+I 
Sbjct: 400 ELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGY--LPSVHTYTSLID 457

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                G +  A+ +L +M    C PN VT + +I G C  G  ++A +L+  +   G   
Sbjct: 458 RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 517

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +   Y++L+  L +  ++  +  LF++M   G  P+ +   V+I  LC  G
Sbjct: 518 NVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAG 568



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 147/327 (44%), Gaps = 24/327 (7%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA L  +A W+  +M      P  + Y  +I  + +   +  A+++   M      P+ +
Sbjct: 270 KAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDV 329

Query: 201 TYVSMIKGFCNAGRLE----------------DACGLFKVMKRHGCAANLVAYSALLDGI 244
           TY +++ G C AG +                 D+   F    RH  A N+V Y AL+DG+
Sbjct: 330 TYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGL 389

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+   ++ A ELL  M   G  C PN + Y ++I  FC  G +  A  +  +M   G  P
Sbjct: 390 CKAHKVDHAHELLDAMLSSG--CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 447

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           +  T ++LI     +G LD A +++ +++      +   Y++++  L R    ++A KL 
Sbjct: 448 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 507

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           S M   G  P+ +  + +I  L   G++     L+  + + G   S +   + VL+  LC
Sbjct: 508 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG--CSPNYVTYRVLINHLC 565

Query: 425 RKNHSVEAAKLARFMLKKRIW---LQG 448
                ++ A+L    +K+  W   LQG
Sbjct: 566 AAG-LLDKARLLLGEMKQTYWPKYLQG 591



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 150/340 (44%), Gaps = 30/340 (8%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED--- 217
            P+  ++N+++  +C + D   A +L+  M      P  + Y   I   C   +L     
Sbjct: 109 NPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDL 168

Query: 218 ---ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
              A  ++  M    C  N V  +     +C +G  ++A +L+ EM ++G    P+  TY
Sbjct: 169 LDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGF--VPDTSTY 226

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + VI   C    +++A  +   M+ +G  P+  T + LI  FC  G +++A  L +++ +
Sbjct: 227 SKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRS 286

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G   +   Y++L+   ++ K++ +A  +F +M+ +G +P+ +    ++  LC  G + +
Sbjct: 287 VGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISK 346

Query: 395 GFCLYEDIEKIGFLSSVDSDI----------------HSVLLLGLCRKNHSVEAAKLARF 438
            F +Y  +  IG   S DSD                 +  L+ GLC+ +    A +L   
Sbjct: 347 AFEVYAKL--IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDA 404

Query: 439 MLKKRIWLQGPYVDKIVEHLKKSGD----EELITNLPKIG 474
           ML           D +++   K+G     +E+   + K G
Sbjct: 405 MLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 444



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 122/275 (44%), Gaps = 12/275 (4%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ R A+    + R+    D + DT++  ++I    E      A   +  M      P
Sbjct: 20  LCKEGRWADALDMIERE----DFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIP 75

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +++TY +++ GF    +L     +  +M   GC  N   +++L+   C       A +LL
Sbjct: 76  NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLL 135

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGK------GMMKEALGILDRMEALGCAPNRVTIST 311
             M   G  C P  V Y   I   CG+       ++  A  I   M A  C  N+V ++ 
Sbjct: 136 NRMTTCG--CPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVAN 193

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
             +  C  G  D+A+QLI +++  G V     YS ++  L    ++++A  LF +M   G
Sbjct: 194 FARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVG 253

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           V PD    +++I   C  G + +   L+E++  +G
Sbjct: 254 VTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG 288



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 2/208 (0%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +E+GC  +V     + +   KA   + ++ +  +M      P+ + Y  +I   C  G +
Sbjct: 511 EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLL 570

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L+  M        +  Y   I+GF  +     + G+ + M+ +G       Y  L
Sbjct: 571 DKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS--FIASLGILEEMESYGTVPIAPVYGML 628

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +D   + G +E A+EL  EM +       +   Y S+IQ  C    ++EA  +   M   
Sbjct: 629 IDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRR 688

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           G  P       LIKG       DEA QL
Sbjct: 689 GFVPELSVFVCLIKGLVEVKKWDEALQL 716


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 166/338 (49%), Gaps = 44/338 (13%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
            +V    ++  LC + R   +A+ +LR M    +RPD + Y  +IR  C+  D+  A EL
Sbjct: 112 TAVSYTTLMRALCAERR-TGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVEL 170

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           ++ M    + P+++ Y  +++G+C AGR E    +F+ M   G   ++V Y+ L+D +CR
Sbjct: 171 LREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCR 230

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL--------------- 291
            G +++A +++ +M + G    PNVVTY  +I   C +G +KEA+               
Sbjct: 231 EGKVKKATQVMDKMMERG--LEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDA 288

Query: 292 -----------GILDRMEALG-----------CAPNRVTISTLIKGFCVEGNLDEAYQLI 329
                      G+L+  EA+G             PN VT +++I G C  G + +A+Q+ 
Sbjct: 289 VTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVR 348

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           D +   G   +   ++ L+  L+R  ++K+A +L  +M +SG++PD    S++I   C  
Sbjct: 349 DMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKM 408

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSV-LLLGLCRK 426
            QV     L   + + G    +   +H + LL  LC +
Sbjct: 409 WQVDRAESLLSKMRRDGIEPEL---VHYIPLLAALCEQ 443



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 155/318 (48%), Gaps = 11/318 (3%)

Query: 81  FIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140
           F+   L+     +S   NR   +  + ++P+++  +           +V    V+  LC 
Sbjct: 37  FLAVLLRRGRAEASARLNRLLRLVPLPESPALLSSLPSVRD------AVSYNTVLAALCR 90

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +    + A+++LR M   + RP  + Y  ++R  C +     A  L++ M    + PD++
Sbjct: 91  QGGCLDAALFLLRVMAH-ETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVV 149

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY ++I+G C+A  ++ A  L + M   G   N+V YS LL G C+ G  E   ++  EM
Sbjct: 150 TYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEM 209

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G    P+VV YT +I   C +G +K+A  ++D+M   G  PN VT + LI   C EG
Sbjct: 210 SGRG--IEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEG 267

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML--ASGVKPDGLA 378
           ++ EA  L + ++  G       Y++L+  L     + EA  L  +M+   + V+P+ + 
Sbjct: 268 SVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVT 327

Query: 379 CSVMIRELCLGGQVLEGF 396
            + +I  LC  G++ + F
Sbjct: 328 FNSVIHGLCKTGRMRQAF 345



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 3/313 (0%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           V  +M    + PD ++Y  +I   C +G +  A ++M  M    L P+++TY  +I   C
Sbjct: 205 VFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMC 264

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G +++A  L   M   G A + V Y+ L+ G+  +  M+ A+ LL EM        PN
Sbjct: 265 KEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPN 324

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           VVT+ SVI   C  G M++A  + D M   GCA N VT + LI G      + +A +L+D
Sbjct: 325 VVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMD 384

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++ + G       YS L+    +  ++  AE L SKM   G++P+ +    ++  LC  G
Sbjct: 385 EMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQG 444

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
            + +    ++++ K      +D   +S ++ G CR      A +  + ML + +      
Sbjct: 445 MMEQARNFFDEMHKN---CKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVT 501

Query: 451 VDKIVEHLKKSGD 463
              ++     SGD
Sbjct: 502 YSMLINMFANSGD 514



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 161/358 (44%), Gaps = 43/358 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG--------------- 178
           +I +LC + ++  +A  V+ KM E  L P+ + YN +I   C++G               
Sbjct: 224 LIDSLCREGKV-KKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEK 282

Query: 179 ----DMIAADELMKG----------MGLID--------LYPDIITYVSMIKGFCNAGRLE 216
               D +  + L+ G          MGL++        + P+++T+ S+I G C  GR+ 
Sbjct: 283 GVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMR 342

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            A  +  +M  +GCA NLV ++ L+ G+ R+  +++A+EL+ EM   G    P+  TY+ 
Sbjct: 343 QAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSG--LEPDSFTYSI 400

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I  FC    +  A  +L +M   G  P  V    L+   C +G +++A    D++    
Sbjct: 401 LINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNC 460

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
            +     YS+++    R +  K AE+    ML  G+ PD +  S++I      G +    
Sbjct: 461 KLDVVA-YSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAE 519

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
            + + +   GF+   D  +   L+ G   K  + +  +L R M  K I L    +  I
Sbjct: 520 RVLKQMTASGFVP--DVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIISTI 575



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 7/234 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R++Q       V +   E GC  ++    ++     +     +AM ++ +M    L
Sbjct: 336 CKTGRMRQ----AFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGL 391

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD+  Y+ +I  FC+   +  A+ L+  M    + P+++ Y+ ++   C  G +E A  
Sbjct: 392 EPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARN 451

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F  M ++ C  ++VAYS ++ G CRL   + A E L  M  EG    P+ VTY+ +I +
Sbjct: 452 FFDEMHKN-CKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEG--LIPDSVTYSMLINM 508

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           F   G +  A  +L +M A G  P+     +LIKG+  +G+ ++  +LI ++ A
Sbjct: 509 FANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTA 562



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC+  R+  +A  V   M E     + + +N +I        +  A ELM 
Sbjct: 326 VTFNSVIHGLCKTGRM-RQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMD 384

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    L PD  TY  +I GFC   +++ A  L   M+R G    LV Y  LL  +C  G
Sbjct: 385 EMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQG 444

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ME+A     EM K   +C  +VV Y+++I   C     K A   L  M   G  P+ VT
Sbjct: 445 MMEQARNFFDEMHK---NCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVT 501

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            S LI  F   G+L  A +++ ++ A G V     + SL+
Sbjct: 502 YSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLI 541



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 233 NLVAYSALLDGICRLGS-MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
           + V+Y+ +L  +CR G  ++ AL LL  M  E     P  V+YT++++  C +    +A+
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHE---TRPTAVSYTTLMRALCAERRTGQAV 133

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
           G+L  M+A G  P+ VT  TLI+G C   ++D+A +L+ ++   G   +   YS L+   
Sbjct: 134 GLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGY 193

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +  R +   K+F +M   G++PD +  + +I  LC  G+V +   + + + + G   +V
Sbjct: 194 CKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNV 253

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
            +  ++VL+  +C++    EA  L   ML+K + L     + ++  L
Sbjct: 254 VT--YNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGL 298


>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 192/397 (48%), Gaps = 21/397 (5%)

Query: 59  STCVIEVLHRCFPSQSQMGIRFFIWA-----ALQSSYRHSSFMYNRACEMSRIKQNPSII 113
           S  V +VL   F S S +     +++      L+   R  +F+     E +R++     +
Sbjct: 246 SGVVFDVLISVFASNSMLENALDVFSNAKHVGLEPDIRTCNFLLKCLVEANRVE----FV 301

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNL------CEKARLANEAMWVLRKMPEFDLRPDTIIY 167
             V E  K+ G   ++    ++ N       C+      +A  +L K+     +P  + Y
Sbjct: 302 RRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAG--MRQAAVILGKIYRSGEKPTVVTY 359

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           +  I   C+ G++ AA  L++ +   +   +  ++  +I GFC  G + +A  + + MK 
Sbjct: 360 STYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKS 419

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   ++ +YS L++  C  G + + L+L+ EME       P++V+YTS+I   C K M+
Sbjct: 420 SGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEH--SQIKPSIVSYTSLIHGLCKKNML 477

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           + A+ I   + A  C  +     TLI GFC++G++D A +L+++++    V +     SL
Sbjct: 478 QNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSL 537

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +    +     +A ++F+ ML  G+ PD +AC+ ++   C  G   E   L ED ++ GF
Sbjct: 538 IRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGF 597

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             +++   ++ ++  LC++ +   A +L   MLK+ +
Sbjct: 598 --NLNPHSYNAIIYKLCKEGYPERALELLPRMLKRNV 632



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 151/299 (50%), Gaps = 5/299 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+K  L N A+ +   +     + D+ +Y  +I  FC +GDM +A +L++
Sbjct: 462 VSYTSLIHGLCKKNMLQN-AVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLE 520

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M   +L P   +  S+I+G+   G  + A  +F  M R G   + +A + +LDG CR G
Sbjct: 521 EMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGSCRAG 580

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
             + AL LL + ++ G + +P+  +Y ++I   C +G  + AL +L RM      P+ V 
Sbjct: 581 YFKEALTLLEDFQEHGFNLNPH--SYNAIIYKLCKEGYPERALELLPRMLKRNVLPSVVN 638

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            STLI GF  + N   A  L  ++V  G   +   Y+ L+     + ++ EA  +F +M 
Sbjct: 639 YSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMK 698

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
             G+  D ++ + +I   C   ++ + + L+E++ + G   S +   ++ ++ G C+ N
Sbjct: 699 ERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREG--CSPNVITYTCIIDGFCKSN 755



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 6/244 (2%)

Query: 141 KARLANEAMWVLRKMPE--FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           +A    EA+ +L    E  F+L P +  YN +I   C++G    A EL+  M   ++ P 
Sbjct: 578 RAGYFKEALTLLEDFQEHGFNLNPHS--YNAIIYKLCKEGYPERALELLPRMLKRNVLPS 635

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++ Y ++I GF      + A  LF  M + G   N+  Y+ L+        M  A  +  
Sbjct: 636 VVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFK 695

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM KE G C  + ++YT++I  FC    MK+A  + + M   GC+PN +T + +I GFC 
Sbjct: 696 EM-KERGLCL-DQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGFCK 753

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
              +D A  + DK+     +     Y+ L+    +     +A KL+  M   GV PD + 
Sbjct: 754 SNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGVLPDDIT 813

Query: 379 CSVM 382
            +V+
Sbjct: 814 HNVL 817



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 115/218 (52%), Gaps = 4/218 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + ++E ++E G  ++      +I+ LC++      A+ +L +M + ++ P  + Y+ +I 
Sbjct: 586 LTLLEDFQEHGFNLNPHSYNAIIYKLCKEG-YPERALELLPRMLKRNVLPSVVNYSTLIS 644

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            F ++ +   A  L   M  + +  +I TY  ++  F ++ ++ +A G+FK MK  G   
Sbjct: 645 GFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCL 704

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           + ++Y+ L+ G C    M++A  L  EM +EG  CSPNV+TYT +I  FC    +  A  
Sbjct: 705 DQISYTTLIVGFCNNREMKKAWALFEEMSREG--CSPNVITYTCIIDGFCKSNRIDLATW 762

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + D+M      P+ VT + LI  +   G  D+A++L D
Sbjct: 763 VFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYD 800



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 3/152 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G   ++    ++ ++   +   +EA  + ++M E  L  D I Y  +I  FC   +M  A
Sbjct: 666 GITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVGFCNNREMKKA 725

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             L + M      P++ITY  +I GFC + R++ A  +F  M R     ++V Y+ L+D 
Sbjct: 726 WALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDW 785

Query: 244 ICRLGSMERALELLGEMEKEG---GDCSPNVV 272
             + G  ++A +L   M+ +G    D + NV+
Sbjct: 786 YHKHGYFDQAHKLYDVMKDKGVLPDDITHNVL 817


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 141/281 (50%), Gaps = 4/281 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + +  ++   C+   +  A EL++ MG    +P+ + +  ++   C  GR  +A G 
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGF 67

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M+  G +  +V Y+ L+DG C+   + RALE+L EM   G +  PN VTY + +   
Sbjct: 68  IETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHE--PNHVTYNTFLHGL 125

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G + +AL +   M       +    +TLI G C  G L EAY L+D++   G V   
Sbjct: 126 CKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKP 185

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
           GCY++++  L +  R+ EA KLF +M  SG+ PD L   +M+   C G ++ +   L + 
Sbjct: 186 GCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQ 245

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           ++  G   +    I++ L+  L R     EA +L + M+ +
Sbjct: 246 MKSAGL--APREVIYNTLIDALNRAGRVSEAYRLLQEMISR 284



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 137/273 (50%), Gaps = 4/273 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
            ++VE   E GC  +  +   I + LC++ R A EA   +  M    + P  + YN +I 
Sbjct: 30  FELVEVMGERGCFPNALVFNGIMDALCKEGRSA-EAYGFIETMRSMGVSPTIVTYNLLID 88

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            FC++  +  A E+++ M      P+ +TY + + G C  G+++DA  LF+ M       
Sbjct: 89  GFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRL 148

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++  Y+ L+DG+C+ G +  A  LL EME  G  C P    Y +++   C    + EA  
Sbjct: 149 DVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG--CVPKPGCYNAILSWLCKGSRINEAHK 206

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +  RM   G  P+ +T   ++ G+C    +D+A  L+ ++ + G       Y++L+  L 
Sbjct: 207 LFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALN 266

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           R  R+ EA +L  +M++ G+ P+    ++M ++
Sbjct: 267 RAGRVSEAYRLLQEMISRGLSPNSRTYALMRKQ 299



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 139/282 (49%), Gaps = 4/282 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+GC+ +V    ++ + LC+  RL  +A  ++  M E    P+ +++N ++   C++G  
Sbjct: 3   EKGCIPTVVTFGILVDGLCKANRL-TDAFELVEVMGERGCFPNALVFNGIMDALCKEGRS 61

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A   ++ M  + + P I+TY  +I GFC   +L  A  + + M   G   N V Y+  
Sbjct: 62  AEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTF 121

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           L G+C+ G ++ AL L   M ++      +V  YT++I   C  G + EA  +LD ME  
Sbjct: 122 LHGLCKYGKVDDALALFRAMTEK--KIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENS 179

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GC P     + ++   C    ++EA++L  ++   G +     +  +V    R  R+ +A
Sbjct: 180 GCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDA 239

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
             L  +M ++G+ P  +  + +I  L   G+V E + L +++
Sbjct: 240 LLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEM 281



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   GC   +V +  L+DG+C+   +  A EL+  M + G  C PN + +  ++   C +
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERG--CFPNALVFNGIMDALCKE 58

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G   EA G ++ M ++G +P  VT + LI GFC E  L  A +++ ++   G   +   Y
Sbjct: 59  GRSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTY 118

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++ +  L +  ++ +A  LF  M    ++ D    + +I  LC  G++ E + L +++E 
Sbjct: 119 NTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMEN 178

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI---WL 446
            G +       ++ +L  LC+ +   EA KL + M    I   WL
Sbjct: 179 SGCVPK--PGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWL 221



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 37/196 (18%)

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C P VVT+  ++   C    + +A  +++ M   GC PN +  + ++   C EG   EAY
Sbjct: 6   CIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAY 65

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
             I+ + + G   +   Y+ L+    + ++L  A ++  +M   G +P+ +         
Sbjct: 66  GFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVT-------- 117

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
                                        ++  L GLC+     +A  L R M +K+I L
Sbjct: 118 -----------------------------YNTFLHGLCKYGKVDDALALFRAMTEKKIRL 148

Query: 447 QGPYVDKIVEHLKKSG 462
                  +++ L ++G
Sbjct: 149 DVYGYTTLIDGLCQAG 164


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 168/365 (46%), Gaps = 50/365 (13%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL-------------RPDTIIYN 168
           EE     +KM K  F +  K R  N  +  L K+   DL             +     YN
Sbjct: 3   EEASECFLKMRK--FRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYN 60

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I   C++GD+  A  L   M      PDI+TY S+I G    G L++   +F+ MK  
Sbjct: 61  IMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA 120

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
            C  +++ Y+AL++  C+   M +A E L EM+  G    PNVVTY++ I  FC +GM++
Sbjct: 121 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANG--LKPNVVTYSTFIDAFCKEGMLQ 178

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           EA+     M  +   PN  T ++LI   C  GNL EA +L+++++  G   +   Y++L+
Sbjct: 179 EAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL 238

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR------------------------ 384
             L    R+KEAE++F  ML +GV P+    + ++                         
Sbjct: 239 DGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK 298

Query: 385 -ELCLGGQVLEGFCLYEDIEKIGFL------SSVDSD--IHSVLLLGLCRKNHSVEAAKL 435
            +L L G +L G C    +E+   L      S ++++  I++ L+    +   + EA  L
Sbjct: 299 PDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTL 358

Query: 436 ARFML 440
              ML
Sbjct: 359 LEEML 363



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 165/359 (45%), Gaps = 20/359 (5%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR 143
           A ++ S    + M +  C+   ++   S+   +    KE G    +     + +   K  
Sbjct: 50  AGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQM----KEAGFTPDIVTYNSLIDGHGKLG 105

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           L +E + +  +M + D  PD I YN +I  FC+   M  A E +  M    L P+++TY 
Sbjct: 106 LLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYS 165

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           + I  FC  G L++A   F  M+R     N   Y++L+D  C+ G++  AL+L+ E+ + 
Sbjct: 166 TFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQA 225

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G     NVVTYT+++   C +G MKEA  +   M   G APN+ T + L+ GF     ++
Sbjct: 226 G--IKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEME 283

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A  ++ ++           Y +++  L    RL+EA+ L  ++  SG+  + +  + ++
Sbjct: 284 YAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLM 343

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
                 GQ  E   L E++     L  VD         GLC+ N    A KL   ML K
Sbjct: 344 DAYFKSGQATEALTLLEEM-----LDLVD---------GLCKNNCFEVAKKLFDEMLDK 388



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 159/352 (45%), Gaps = 18/352 (5%)

Query: 69  CFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS 128
           C     Q  I+FF+    + +   + F Y    + +    N +  + +VE   + G  ++
Sbjct: 172 CKEGMLQEAIKFFV-DMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLN 230

Query: 129 VKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           V     + + LCE+ R+  EA  V R M    + P+   Y  ++  F +  +M  A +++
Sbjct: 231 VVTYTALLDGLCEEGRM-KEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDIL 289

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           K M    + PD++ Y +++ G CN  RLE+A  L   +K  G   N V Y+ L+D   + 
Sbjct: 290 KEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKS 349

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    AL LL EM                ++   C     + A  + D M   G  P+++
Sbjct: 350 GQATEALTLLEEM--------------LDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKI 395

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
             + LI G    GNL EA  L D+++  G       Y++L+  L  + ++++A  L  +M
Sbjct: 396 AYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEM 455

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV-DSDIHSV 418
           +  GV PD +    +I++    G+V E   L  ++ K G ++ + D  + SV
Sbjct: 456 IGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGLSDHAVPSV 507


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 162/343 (47%), Gaps = 39/343 (11%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA   + A  +L  M      P+ I+Y+ +I  FC+ G + +A E+   M      P + 
Sbjct: 456 KAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVH 515

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY S+I      GRL+ A  +   M +  C  N+V Y+A++DG+CR+G  E+AL+LL  M
Sbjct: 516 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 575

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           E++G  CSPNVVTYT++I      G +  +L +  +M   GC+PN VT   LI   C  G
Sbjct: 576 EEKG--CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAG 633

Query: 321 NLDEAYQL---------------------------------IDKVVAGGSVSSGGCYSSL 347
            LD+A  L                                 ++++ + G+V     Y  L
Sbjct: 634 LLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGML 693

Query: 348 VVELVRTKRLKEAEKLFSKML--ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           +    +  RL+ A +L  +M+   S VK D    + +I+ LCL  QV E F LY ++ + 
Sbjct: 694 IDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRR 753

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
           GF+  +   +   L+ GL       EA +L   +  + +  QG
Sbjct: 754 GFVPEL--SVFVCLIKGLVEVKKWDEALQLCYGICHEGVNWQG 794



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC   ++  +A  + ++M    + PD   Y  +I  FC+ G +  A  L + M  
Sbjct: 293 KVITFLCHATKV-EKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRS 351

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   P ++TY ++I  +  A ++  A  +F  M   GC  N V Y AL+DG+C+ G++ +
Sbjct: 352 VGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISK 411

Query: 253 ALE----LLGEMEKEGGD----------CSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A E    L+G  +    D           +PNVVTY +++   C    +  A  +LD M 
Sbjct: 412 AFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAML 471

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           + GC PN +    LI GFC  G +D A ++  ++   G + S   Y+SL+  + +  RL 
Sbjct: 472 SSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLD 531

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ S+ML     P+ +  + MI  LC  G+  +   L   +E+ G
Sbjct: 532 LAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 579



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 140/291 (48%), Gaps = 18/291 (6%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  +  GC  +V     + +   KA+   +A  +  +M +   RP+ + Y  ++   C
Sbjct: 345 LFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLC 404

Query: 176 EKGDMIAADELM-KGMGLID---------------LYPDIITYVSMIKGFCNAGRLEDAC 219
           + G++  A E+  K +G  D               L P+++TY +++ G C A +++ A 
Sbjct: 405 KAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAH 464

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M   GC  N + Y AL+DG C+ G ++ A E+  +M K G    P+V TYTS+I 
Sbjct: 465 ELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGY--LPSVHTYTSLID 522

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                G +  A+ +L +M    C PN VT + +I G C  G  ++A +L+  +   G   
Sbjct: 523 RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 582

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +   Y++L+  L +  ++  +  LF++M   G  P+ +   V+I  LC  G
Sbjct: 583 NVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAG 633



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 147/327 (44%), Gaps = 24/327 (7%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA L  +A W+  +M      P  + Y  +I  + +   +  A+++   M      P+ +
Sbjct: 335 KAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDV 394

Query: 201 TYVSMIKGFCNAGRLE----------------DACGLFKVMKRHGCAANLVAYSALLDGI 244
           TY +++ G C AG +                 D+   F    RH  A N+V Y AL+DG+
Sbjct: 395 TYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGL 454

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+   ++ A ELL  M   G  C PN + Y ++I  FC  G +  A  +  +M   G  P
Sbjct: 455 CKAHKVDHAHELLDAMLSSG--CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 512

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           +  T ++LI     +G LD A +++ +++      +   Y++++  L R    ++A KL 
Sbjct: 513 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 572

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           S M   G  P+ +  + +I  L   G++     L+  + + G   S +   + VL+  LC
Sbjct: 573 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG--CSPNYVTYRVLINHLC 630

Query: 425 RKNHSVEAAKLARFMLKKRIW---LQG 448
                ++ A+L    +K+  W   LQG
Sbjct: 631 AAG-LLDKARLLLGEMKQTYWPKYLQG 656



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 137/324 (42%), Gaps = 13/324 (4%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEG-CVVSVKMMKVIFNLCEKARLANEA 148
           YR S   YN   ++        +   V +   E G C+    +      LC++ R A+  
Sbjct: 36  YRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADAL 95

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             + R+    D + DT++  ++I    E      A   +  M      P+++TY +++ G
Sbjct: 96  DMIERE----DFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSG 151

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           F    +L     +  +M   GC  N   +++L+   C       A +LL  M   G  C 
Sbjct: 152 FLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG--CP 209

Query: 269 PNVVTYTSVIQIFCGK------GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
           P  V Y   I   CG+       ++  A  I   M A  C  N+V ++   +  C  G  
Sbjct: 210 PGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKF 269

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           D+A+QLI +++  G V     YS ++  L    ++++A  LF +M   GV PD    +++
Sbjct: 270 DKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTIL 329

Query: 383 IRELCLGGQVLEGFCLYEDIEKIG 406
           I   C  G + +   L+E++  +G
Sbjct: 330 IDSFCKAGLIEQAQWLFEEMRSVG 353



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 125/287 (43%), Gaps = 14/287 (4%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           + +F  RP  + YN ++++    G +     + K M       D  T        C  GR
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
             DA     +++R     + V  + ++ G+      + A+  L  M      C PNVVTY
Sbjct: 91  WADA---LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMR--CNSCIPNVVTY 145

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            +++  F  K  +     I++ M   GC PN    ++L+  +C E +   AY+L++++  
Sbjct: 146 RTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTT 205

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKE------AEKLFSKMLASGVKPDGLACSVMIRELCL 388
            G       Y+  +  +   ++L        AEK++ +MLA+    + +  +   R LC 
Sbjct: 206 CGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCG 265

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            G+  + F L +++ + GF+   D+  +S ++  LC     VE A L
Sbjct: 266 VGKFDKAFQLIKEMMRKGFVP--DTSTYSKVITFLCHAT-KVEKAFL 309



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 2/208 (0%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +E+GC  +V     + +   KA   + ++ +  +M      P+ + Y  +I   C  G +
Sbjct: 576 EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLL 635

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L+  M        +  Y   I+GF  +     + G+ + M+ +G       Y  L
Sbjct: 636 DKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS--FIASLGILEEMESYGTVPIAPVYGML 693

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +D   + G +E A+EL  EM +       +   Y S+IQ  C    ++EA  +   M   
Sbjct: 694 IDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRR 753

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           G  P       LIKG       DEA QL
Sbjct: 754 GFVPELSVFVCLIKGLVEVKKWDEALQL 781


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 174/368 (47%), Gaps = 44/368 (11%)

Query: 134 VIFNLC----EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           V++N+C     KA   + A     ++    L+PD + Y ++I + C+ G +  A+EL   
Sbjct: 116 VLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQ 175

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M      P    Y +MI G+ +AGR EDA  L + ++  GC  ++V+++++L  + +   
Sbjct: 176 MEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRK 235

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--------- 300
           ++ AL L   M+K   D  PN  TY  +I + C  G ++EA  ILD ME           
Sbjct: 236 VDEALSLFEVMKK---DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTV 292

Query: 301 --------------------------GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
                                     GC P+ VT  +LI G   +G +DEAY+L +K++ 
Sbjct: 293 NIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLD 352

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G  ++   Y+SL+       R ++  K+F +++  G KPD    +  +  +   G+V +
Sbjct: 353 AGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEK 412

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           G  ++EDI   GFL  V S  +S+L+ GL +   + E + +   M ++   L     + +
Sbjct: 413 GRMIFEDIRSYGFLPDVRS--YSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAV 470

Query: 455 VEHLKKSG 462
           V+   KSG
Sbjct: 471 VDGFCKSG 478



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 135/281 (48%), Gaps = 2/281 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  +  G +  V+   ++ +   KA  A E   +   M +     D   YN V+  FC
Sbjct: 416 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 475

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A E+++ M    + P + TY +++ G     RL++A  LF+  K  G   N+V
Sbjct: 476 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVV 535

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS+L+DG  ++G ++ A  +L EM K+G   +PNV T+ S++        + EAL    
Sbjct: 536 LYSSLIDGFGKVGRIDEAYLILEEMMKKG--LTPNVYTWNSLLDALVKAEEINEALVCFQ 593

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+ + C PN  T S LI G C     ++A+     +   G V +   Y++++  L +  
Sbjct: 594 SMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVG 653

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
            + +A  LF +  A+G  PD  + + +I  +    + +E +
Sbjct: 654 NITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAY 694



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 142/280 (50%), Gaps = 14/280 (5%)

Query: 161 RPDTIIYNNVIRLF-----CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
           +PD  + N  +         EKG MI  D  ++  G +   PD+ +Y  +I G   AG+ 
Sbjct: 391 KPDLTLLNTYMDCVFKAGEVEKGRMIFED--IRSYGFL---PDVRSYSILIHGLTKAGQA 445

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
            +   +F  MK+ G A +  AY+A++DG C+ G + +A E+L EM+++     P V TY 
Sbjct: 446 RETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC--VQPTVATYG 503

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           +++        + EA  + +  ++ G   N V  S+LI GF   G +DEAY ++++++  
Sbjct: 504 AIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK 563

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   ++SL+  LV+ + + EA   F  M      P+    S++I  LC   +  + 
Sbjct: 564 GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKA 623

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           F  ++D++K G + +V +  ++ ++ GL +  +  +A  L
Sbjct: 624 FVFWQDMQKQGLVPNVVT--YTTMISGLAKVGNITDAYSL 661



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 140/289 (48%), Gaps = 3/289 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  +E GC+ SV     I     K R  +EA+ +   M + D  P++  YN +I + C
Sbjct: 207 LLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLC 265

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G +  A  ++  M    L+P+++T   M+   C A +LE+A  +F+   + GC  + V
Sbjct: 266 LGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCV 325

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y +L+DG+ + G ++ A  L  +M   G + +P  V YTS+I+ F   G  ++   +  
Sbjct: 326 TYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANP--VVYTSLIRNFFIHGRKEDGHKVFK 383

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            +   GC P+   ++T +      G +++   + + + + G +     YS L+  L +  
Sbjct: 384 ELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAG 443

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + +E   +F  M   G   D  A + ++   C  G+V + + + E++++
Sbjct: 444 QARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE 492



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 148/307 (48%), Gaps = 5/307 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+     +AR    A+ +LR+M E        ++  ++R    +G +  A  L+  +   
Sbjct: 50  VLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGS 109

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PDI+ Y   I  F  AG ++ AC  F  +K  G   + V+Y++++  +C+ G +  A
Sbjct: 110 CLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEA 169

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL  +ME E     P    Y ++I  +   G  ++A  +L+R+   GC P+ V+ ++++
Sbjct: 170 EELFAQMEAE--RSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSIL 227

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
                +  +DEA  L + V+   +  +   Y+ ++  L    R++EA ++  +M  + + 
Sbjct: 228 TCLGKKRKVDEALSLFE-VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLF 286

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ L  ++M+  LC   ++ E + ++E   + G   + D   +  L+ GL +K    EA 
Sbjct: 287 PNLLTVNIMVDRLCKARKLEEAYKIFESASQRG--CNPDCVTYCSLIDGLGKKGQVDEAY 344

Query: 434 KLARFML 440
           +L   ML
Sbjct: 345 RLFEKML 351


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 152/301 (50%), Gaps = 14/301 (4%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM---GLIDLYPDIITYVS 204
           A+ +LR+MP     P+ + YN VI  FC +G + A  E+M+ M   G I   PD  TY +
Sbjct: 135 ALELLRQMPS----PNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGI--APDKYTYAT 188

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           +I G+C  G++EDA  +F  M   G    N V Y+AL+ G C  G++E AL   GEM   
Sbjct: 189 VISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDR 248

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G   S  V TY   +     +G   EA  +++ M   G AP+  T + LI G+C EG   
Sbjct: 249 G--VSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEK 306

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +A ++ + +V  G  ++   Y+SL+  L     ++E ++LF+  +  G++PD    + +I
Sbjct: 307 KAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALI 366

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
              C GG +   F +  ++EK     + D   ++ L+ GLC      EA  L   M K+ 
Sbjct: 367 NSHCTGGDMDRAFEIMGEMEKKRI--TPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRG 424

Query: 444 I 444
           I
Sbjct: 425 I 425



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 162/372 (43%), Gaps = 49/372 (13%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM--KVIFNLCEKARLANEAMWVLRKMPEF 158
           C   R++      I+++   +E G +   K     VI   C+  ++ +        + E 
Sbjct: 158 CARGRVQAG----IEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEG 213

Query: 159 DLRPDTIIYNNVIRLFCEKGDM-----------------------------------IAA 183
            + P+ ++YN +I  +C++G++                                     A
Sbjct: 214 KVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEA 273

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             L++ MG   L PD  TY  +I G+C  G+ + A  +F+VM   G  A +V Y++L+  
Sbjct: 274 HALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHA 333

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +   G ++    L  +  + G    P++  Y ++I   C  G M  A  I+  ME     
Sbjct: 334 LSMKGMVQETDRLFNDAVRRG--IRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRIT 391

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ VT +TL++G C+ G LDEA  LI+++   G       Y++L+        +K+A K+
Sbjct: 392 PDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKV 451

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI--EKIGFLSSVDSDIHSVLLL 421
             +M+  G  P  L  + MI+ LCL GQ  +     ED+  E +G   + D   +  L+ 
Sbjct: 452 RDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDA----EDLVKEMVGNGITPDDSTYISLIE 507

Query: 422 GLCRKNHSVEAA 433
           GL  ++  + A 
Sbjct: 508 GLTTEDERLAAG 519



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 10/226 (4%)

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  + R     +   ++ +L  +C  G   RALELL +M       SPN VTY +VI  
Sbjct: 103 LFADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMP------SPNAVTYNTVIAG 156

Query: 281 FCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
           FC +G ++  + I+  M E  G AP++ T +T+I G+C  G +++A ++ D+++  G V 
Sbjct: 157 FCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVE 216

Query: 340 SGGC-YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y++L+        L+ A +   +M+  GV       ++ +  L + G+  E   L
Sbjct: 217 PNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHAL 276

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            E++ + G   + D+  +++L+ G C++    +A K+   M+ K I
Sbjct: 277 VEEMGEKGL--APDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGI 320


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 150/289 (51%), Gaps = 9/289 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +LR M + + RP+ I YN +I   C+   +  A  L   M    + PDI TY S+I 
Sbjct: 236 AIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIH 295

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             CN    +    L   M       N+V +S ++D +C+ G +  A +++  M K G   
Sbjct: 296 ALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRG--V 353

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+VVTYT+++   C +  M EA+ + D M   GC PN  + + LI G+C    +D+A  
Sbjct: 354 EPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMG 413

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L++++   G ++    Y++L+  L    RL+ A  LF +M+ASG  PD +   +++  LC
Sbjct: 414 LLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLC 473

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAK 434
               + E   L + IE     S++D+DI  +++ + G+CR    +EAA+
Sbjct: 474 KNHHLAEAMVLLKAIEG----SNLDADILVYNIAIDGMCRAG-ELEAAR 517



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 139/299 (46%), Gaps = 2/299 (0%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N S  I ++ +  ++ C  +V     I +   K R   EA  +  +M    + PD   YN
Sbjct: 232 NTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYN 291

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           ++I   C   +      L+  M    + P+++ + +++   C  G +  A  +  +M + 
Sbjct: 292 SLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKR 351

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   ++V Y+AL+DG C    M+ A+++   M  +G  C PNV +Y  +I  +C    M 
Sbjct: 352 GVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG--CVPNVRSYNILINGYCQIQRMD 409

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A+G+L++M   G   + VT +TLI G C  G L  A  L  ++VA G +     Y  L+
Sbjct: 410 KAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILL 469

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
             L +   L EA  L   +  S +  D L  ++ I  +C  G++     L+ ++   GF
Sbjct: 470 DYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQGF 528



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 131/299 (43%), Gaps = 8/299 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+    +M      P T+ +  ++    +         L   M    + PD+ T   +
Sbjct: 94  DDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNIL 153

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC+  RL  A  +   + + GC  +   ++ L+ G+C  G +  AL L  +   EG 
Sbjct: 154 INSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG- 212

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+VVTY +++   C  G    A+ +L  M    C PN +  +T+I   C +  + EA
Sbjct: 213 -FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 271

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           + L  +++  G       Y+SL+  L      K    L ++M+ S + P+ +  S ++  
Sbjct: 272 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 331

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC  G +     +  D+  +     V+ D+  ++ L+ G C ++   EA K+   M+ K
Sbjct: 332 LCKEGMI----AIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHK 386



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 108/248 (43%), Gaps = 4/248 (1%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L+DA   F  M       + V ++ LL  I ++      L L  +M+  G    P+V T 
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFG--IPPDVYTL 150

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +I  FC    +  A  +L ++  LGC P+  T +TLI+G CVEG + EA  L DK + 
Sbjct: 151 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 210

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y +L+  L +      A +L   M+    +P+ +A + +I  LC   QV E
Sbjct: 211 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 270

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
            F L+ ++   G   S D   ++ L+  LC          L   M+  +I         +
Sbjct: 271 AFNLFSEMITKGI--SPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 328

Query: 455 VEHLKKSG 462
           V+ L K G
Sbjct: 329 VDALCKEG 336



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 17/191 (8%)

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFF---IWAALQSSYRHSSFMYNRACE 102
           +E  + T  A +D          C  S+    ++ F   +      + R  + + N  C+
Sbjct: 353 VEPDVVTYTALMDG--------HCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQ 404

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR 161
           + R+ +     + ++E    +G +  +V    +I  LC   RL   A+ +  +M      
Sbjct: 405 IQRMDK----AMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRL-QHAIALFHEMVASGQI 459

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + Y  ++   C+   +  A  L+K +   +L  DI+ Y   I G C AG LE A  L
Sbjct: 460 PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDL 519

Query: 222 FKVMKRHGCAA 232
           F  +   G AA
Sbjct: 520 FSNLSCQGFAA 530


>gi|302763707|ref|XP_002965275.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
 gi|300167508|gb|EFJ34113.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
          Length = 445

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 132/256 (51%), Gaps = 2/256 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA L +EA  ++  M         + +N V+   C+ G    A ++M+ M L ++ P+I+
Sbjct: 130 KAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNIL 189

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T   ++  FC A R E+A G+  +M   G    +V ++ALL+  C    M+ A ELL  M
Sbjct: 190 TLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAELLETM 249

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            +    C PN VTY+ ++Q F   G M EA   L+++   G APN +  +  + G C  G
Sbjct: 250 AR--SKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTG 307

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            +D A + +  +   G  ++   Y+SLV    +  R+ EAE++  +M+A G  PD    S
Sbjct: 308 EMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYS 367

Query: 381 VMIRELCLGGQVLEGF 396
           V+I+ LC  GQ++  F
Sbjct: 368 VLIQGLCSAGQIVHAF 383



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 3/200 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C+ AR   EA+ +   M E    P  + +N ++ LFC    M +A EL++ M   
Sbjct: 194 ILHAFCKAAR-PEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAELLETMARS 252

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+ +TY  M++ F   GR+ +A    + +   G A NL+  +A + G+C+ G M+ A
Sbjct: 253 KCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLA 312

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
              L  M +EG  C  N  TY S+++ FC  G M EA  +L+ M A G  P+  T S LI
Sbjct: 313 SRFLTVMAEEG--CRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLI 370

Query: 314 KGFCVEGNLDEAYQLIDKVV 333
           +G C  G +  A+ ++ +V 
Sbjct: 371 QGLCSAGQIVHAFMVMLQVT 390



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 149/355 (41%), Gaps = 71/355 (20%)

Query: 146 NEAMWVLRKMPEFDLRPDTII--YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           +EA  ++ +  +  + P +++  +N +++ F E       DE    +  +D  P+ ++Y 
Sbjct: 31  DEAKRLVAEFKDTGMSPGSLVVLHNLMLKGFSEAR---LVDEAKSHLHRMDCKPNSVSYN 87

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++I   C++GR+++A    + M + G A N V Y+A+  G+ + G ++ A EL+G ME  
Sbjct: 88  TLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMESA 147

Query: 264 G---------------------------------GDCSPNVVTYTSVIQIFCGKGMMKEA 290
           G                                  +  PN++T   ++  FC     +EA
Sbjct: 148 GFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNILTLNLILHAFCKAARPEEA 207

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           LG+ D M  +G  P  VT + L++ FC    +D A +L++ +       +   YS +V +
Sbjct: 208 LGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAELLETMARSKCKPNFVTYSIMVQK 267

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ------------------- 391
                R+ EA     +++  G  P+ L C+  +  LC  G+                   
Sbjct: 268 FAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRAN 327

Query: 392 ------VLEGFCLYEDI--------EKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
                 ++EGFC    +        E I   S  DS  +SVL+ GLC     V A
Sbjct: 328 TATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIVHA 382



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 9/246 (3%)

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELL 257
            TY +++ G C AG  ++A  L    K  G +    +V ++ +L G      ++ A   L
Sbjct: 15  FTYGTLVHGHCLAGEFDEAKRLVAEFKDTGMSPGSLVVLHNLMLKGFSEARLVDEAKSHL 74

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M     DC PN V+Y ++I   C  G ++EA   L  M   G APNRVT + +  G  
Sbjct: 75  HRM-----DCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLG 129

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G LDEA++L+  + + G   +   ++ +V  L ++ +  EA K+   ML   ++P+ L
Sbjct: 130 KAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNIL 189

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             ++++   C   +  E   + + + ++GF  ++ +   + LL   C  +    AA+L  
Sbjct: 190 TLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVT--FNALLELFCNTDQMDSAAELLE 247

Query: 438 FMLKKR 443
            M + +
Sbjct: 248 TMARSK 253



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 12/137 (8%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           +  LC+   + + A   L  M E   R +T  YN+++  FC+ G M  A+ +++ M    
Sbjct: 300 VAGLCKTGEM-DLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEG 358

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----HGCAANLVAYSALLDGICRLGS 249
             PD  TY  +I+G C+AG++  A   F VM +          +   +  L++ +C LG 
Sbjct: 359 SLPDSTTYSVLIQGLCSAGQIVHA---FMVMLQVTRAVESARPDPATFVKLIEKLCELGE 415

Query: 250 MERA---LELLGEMEKE 263
           M+RA   LE +G+  +E
Sbjct: 416 MDRAALVLERMGDEHEE 432



 Score = 38.9 bits (89), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 36/186 (19%)

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI----DKVVAGGSV---------- 338
           +LDR        +  T  TL+ G C+ G  DEA +L+    D  ++ GS+          
Sbjct: 1   MLDRKTLGEFVHSEFTYGTLVHGHCLAGEFDEAKRLVAEFKDTGMSPGSLVVLHNLMLKG 60

Query: 339 --------------------SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
                                +   Y++L+  L  + R++EA +    M   GV P+ + 
Sbjct: 61  FSEARLVDEAKSHLHRMDCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVT 120

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            + M   L   G + E F L   +E  GF  ++ +   + ++  LC+     EA K+   
Sbjct: 121 YNAMATGLGKAGLLDEAFELMGVMESAGF--ALTAVTFNPVVEFLCKSGKPDEACKVMET 178

Query: 439 MLKKRI 444
           ML + I
Sbjct: 179 MLLRNI 184


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 168/334 (50%), Gaps = 10/334 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM-KGMGLIDLY 196
           LC   ++ +EA  +L K+P     P+ +++N +I  +  +G +  A  +M + M  +   
Sbjct: 332 LCRMGKV-DEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCG 386

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PDI TY ++I G C  G L  A  L   M+  GC  N++ Y+ L+D  C+ G +E A  +
Sbjct: 387 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 446

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EM  +G   + N V Y  +I   C    +++AL +   M + GC P+  T ++LI G 
Sbjct: 447 LDEMSGKG--LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGL 504

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C     +EA  L   ++  G +++   Y++L+   +R   ++EA KL + ML  G   D 
Sbjct: 505 CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDD 564

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I+ LC  G + +G  L+ED+   G   + ++   ++L+ GLCR  +   A +  
Sbjct: 565 ITYNGLIKALCRAGNIEKGLALFEDMMSKGL--NPNNISCNILINGLCRTGNIQHALEFL 622

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           R M+ + +       + ++  L K+G  +   NL
Sbjct: 623 RDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNL 656



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 141/289 (48%), Gaps = 4/289 (1%)

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC  +V    ++ +  C++ RL  EA  VL +M    L  + + YN +I   C+   + 
Sbjct: 418 KGCEPNVITYTILIDRFCKEGRLE-EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQ 476

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  +   M      PDI T+ S+I G C   + E+A GL++ M   G  AN + Y+ L+
Sbjct: 477 DALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLI 536

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
               R G+M+ AL+L+ +M   G  C  + +TY  +I+  C  G +++ L + + M + G
Sbjct: 537 HAFLRRGAMQEALKLVNDMLFRG--CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKG 594

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN ++ + LI G C  GN+  A + +  ++  G       Y+SL+  L +T R +EA 
Sbjct: 595 LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEAL 654

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
            LF K+   G+ PD +  + +I   C  G   +   L       GF+ +
Sbjct: 655 NLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPN 703



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 168/343 (48%), Gaps = 7/343 (2%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
            GCV +  + + + +   K    NE + +L +M      PD   +N+ I   C+   +  
Sbjct: 246 HGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHE 305

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +L+  M L    P+  TY  ++ G C  G++++A  L   +       N+V ++ L++
Sbjct: 306 AAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN----PNVVLFNTLIN 361

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G    G ++ A  ++ E     G C P++ TY ++I   C KG +  A  +++ M+  GC
Sbjct: 362 GYVSRGRLDEAKAVMHESMLSVG-CGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGC 420

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN +T + LI  FC EG L+EA  ++D++   G   +   Y+ L+  L + +++++A  
Sbjct: 421 EPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALN 480

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           +F  M + G KPD    + +I  LC   +  E   LY+D+   G +++  +  ++ L+  
Sbjct: 481 MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTIT--YNTLIHA 538

Query: 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
             R+    EA KL   ML +   L     + +++ L ++G+ E
Sbjct: 539 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIE 581



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +IF LC+  +   EA+ + + M    +  +TI YN +I  F  +G M  A +L+  M   
Sbjct: 500 LIFGLCKVNKFE-EALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFR 558

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               D ITY  +IK  C AG +E    LF+ M   G   N ++ + L++G+CR G+++ A
Sbjct: 559 GCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHA 618

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           LE L +M   G   +P++VTY S+I   C  G  +EAL + D+++  G  P+ +T +TLI
Sbjct: 619 LEFLRDMIHRG--LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 676

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              C EG  D+A+ L+ + V  G + +   +  LV   ++
Sbjct: 677 SWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIK 716



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 3/250 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  ++  +A+ +   M     +PD   +N++I   C+      A  L + M L 
Sbjct: 465 LISALCKDEKV-QDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLE 523

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  + ITY ++I  F   G +++A  L   M   GC  + + Y+ L+  +CR G++E+ 
Sbjct: 524 GVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKG 583

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L L  +M  +G   +PN ++   +I   C  G ++ AL  L  M   G  P+ VT ++LI
Sbjct: 584 LALFEDMMSKG--LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLI 641

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G   EA  L DK+   G       Y++L+    +     +A  L S+ + SG  
Sbjct: 642 NGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFI 701

Query: 374 PDGLACSVMI 383
           P+ +   +++
Sbjct: 702 PNEVTWYILV 711



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D I YN +I+  C  G++     L + M    L P+ I+   +I G C  G ++ A    
Sbjct: 563 DDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFL 622

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + M   G   ++V Y++L++G+C+ G  + AL L  +++ EG    P+ +TY ++I   C
Sbjct: 623 RDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG--ICPDAITYNTLISWHC 680

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            +GM  +A  +L R    G  PN VT   L+  F  EG+
Sbjct: 681 KEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 719



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 33/269 (12%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           ++ ++K +  AG    A  L   M+  + C     +Y+ +LD +      +    +  EM
Sbjct: 149 FILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEM 208

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G   SP V T+  V++  C    +  A  +L  M   GC PN +   TLI      G
Sbjct: 209 LSKG--ISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVG 266

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            ++E  +L+++++  G +     ++  +  L +  R+ EA KL  +ML  G  P+     
Sbjct: 267 RVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYG 326

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKI----------GFLS--------------------S 410
           V++  LC  G+V E   L   +             G++S                     
Sbjct: 327 VLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCG 386

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            D   ++ L+LGLC+K + V A +L   M
Sbjct: 387 PDIFTYNTLILGLCKKGYLVSARELMNEM 415



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 3/234 (1%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  +I     AG  +    L   MK+ G       +  ++    R G   +A  LL +M 
Sbjct: 114 YYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM- 172

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           +    C P   +Y  V+ +       K    +   M + G +P   T   ++K  C+   
Sbjct: 173 RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNE 232

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +D A  L+  +   G V +   Y +L+  L +  R+ E  KL  +ML  G  PD    + 
Sbjct: 233 VDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFND 292

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            I  LC   ++ E   L + +   GF  + +S  + VL+ GLCR     EA  L
Sbjct: 293 AIHGLCKMLRIHEAAKLVDRMLLRGF--TPNSFTYGVLMHGLCRMGKVDEARML 344



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 13/184 (7%)

Query: 80  FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK------ 133
           F    A+Q + +  + M  R C +  I  N  I         E+G  +   MM       
Sbjct: 539 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPN 598

Query: 134 ------VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
                 +I  LC    +   A+  LR M    L PD + YN++I   C+ G    A  L 
Sbjct: 599 NISCNILINGLCRTGNI-QHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 657

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             + +  + PD ITY ++I   C  G  +DA  L       G   N V +  L+    + 
Sbjct: 658 DKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKE 717

Query: 248 GSME 251
           G  E
Sbjct: 718 GDQE 721


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 219/449 (48%), Gaps = 30/449 (6%)

Query: 23  ALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFI 82
           ALHF        F+  ++  P     +L++    L     I+   + F   +QM +    
Sbjct: 53  ALHF--------FHLMMRSTPT---PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRL---- 97

Query: 83  WAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142
            + L S     + + N  C ++R+++  +    ++        V    ++K    LC + 
Sbjct: 98  -SGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIK---GLCMEH 153

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM------GLIDLY 196
           R++ EA  +  +M +    PD + Y  +I+  C  G++  A +L + M        I+  
Sbjct: 154 RIS-EATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCK 212

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P++ITY  ++ G C  GR ++A  LF+ MK  G   ++++Y++L+ G C  G  E +  L
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRL 272

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EM  +G    P++VT+  +I   C +G + EA  +L  M   G  P+ VT ++LI+GF
Sbjct: 273 LDEMLDQG--LQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGF 330

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C+ G+L+ A +L   + + G       Y+ L+    +T +++EA KL+++ML  G +P+ 
Sbjct: 331 CMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNV 390

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +    +++ + L G+V +   L+  ++  G   + +S  + + L GLC+ +   EA KL 
Sbjct: 391 ITYDSLLKGIFLAGKVDDAKKLFSVMKAHGI--AENSYTYGIFLDGLCKNDCLFEAMKLF 448

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
             +      L+   ++ +++ L K+G  E
Sbjct: 449 TELKSSNFKLEIENLNCLIDGLCKAGKLE 477



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 2/241 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A  +   MP     PD I YN +I  + +   +  A +L   M L+   P++ITY S+
Sbjct: 337 NSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSL 396

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +KG   AG+++DA  LF VMK HG A N   Y   LDG+C+   +  A++L  E+  +  
Sbjct: 397 LKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTEL--KSS 454

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +    +     +I   C  G ++ A  + +++   G  PN VT + +I GFC EG +D+A
Sbjct: 455 NFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKA 514

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             LI K+ A G       Y++L+     + +L+E  +L  +M    V PD + CS+++  
Sbjct: 515 NVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDM 574

Query: 386 L 386
           L
Sbjct: 575 L 575



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 173/360 (48%), Gaps = 7/360 (1%)

Query: 116 VVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           + E  K +G + S+     +I   C   +   E+  +L +M +  L+PD + +N +I   
Sbjct: 237 LFEEMKTQGMIPSIISYNSLIHGFCCAGKWE-ESKRLLDEMLDQGLQPDMVTFNVLIDTL 295

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C++G +I A +L+  M    + PD++TY S+I+GFC  G L  A  LF  M   GC  ++
Sbjct: 296 CKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDV 355

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           ++Y+ L++G  +   +E A++L  EM   G    PNV+TY S+++     G + +A  + 
Sbjct: 356 ISYNVLINGYSKTLKVEEAMKLYNEMLLVGK--RPNVITYDSLLKGIFLAGKVDDAKKLF 413

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             M+A G A N  T    + G C    L EA +L  ++ +          + L+  L + 
Sbjct: 414 SVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKA 473

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            +L+ A +LF K+   G +P+ +  ++MI   C  GQV +   L + +E  G   + D  
Sbjct: 474 GKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANG--CTPDII 531

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD-EELITNLPKI 473
            ++ L+ G    N   E  +L   M +K +         +V+ L K    +E +  LP+ 
Sbjct: 532 TYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRF 591



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 155/306 (50%), Gaps = 5/306 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC+  R  +EA  +  +M    + P  I YN++I  FC  G    +  L+  M   
Sbjct: 221 IVDGLCKVGR-EDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQ 279

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD++T+  +I   C  G++ +A  L  VM   G   +LV Y++L++G C +G +  A
Sbjct: 280 GLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSA 339

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL   M  +G  C P+V++Y  +I  +     ++EA+ + + M  +G  PN +T  +L+
Sbjct: 340 RELFVSMPSKG--CEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLL 397

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           KG  + G +D+A +L   + A G   +   Y   +  L +   L EA KLF+++ +S  K
Sbjct: 398 KGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFK 457

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            +    + +I  LC  G++   + L+E +   G   +V +  +++++ G CR+    +A 
Sbjct: 458 LEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVT--YTIMIHGFCREGQVDKAN 515

Query: 434 KLARFM 439
            L + M
Sbjct: 516 VLIQKM 521


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 139/264 (52%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++ A  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P++ T +TLI G C EG+LD A++
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++ + G   SV
Sbjct: 399 KKGDVWKGSKLLKEMHRDGHAPSV 422



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 4/238 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L   +      
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ + G   S  +  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 131 EEILECGYPAS--LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+LDE ++L   ++A G       YS L+  L +  ++  A +LF +ML  G+ P+G+
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGV 248

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP--DLITYNTLIYGLCKKGDLKQAHDL 304



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC++ R + +A  +LR+M    L+PDT  Y  +I  FC+KGD+    +L+K
Sbjct: 353 VAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLK 411

Query: 189 GMGLIDLYPDIITYVSMIKG 208
            M      P ++TY  ++ G
Sbjct: 412 EMHRDGHAPSVVTYNVLMNG 431


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 190/389 (48%), Gaps = 18/389 (4%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           + + N  C ++R+ +  +++  ++        V    ++K    LC + R++  A+   R
Sbjct: 135 NILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIK---GLCMEHRISKAALLFTR 191

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAA----DELMKGMGL--IDLYPDIITYVSMIK 207
            M +    P+ I Y  +++  C  G++  A     E++    L  I+  P +I+Y  +I 
Sbjct: 192 -MQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIID 250

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             C   R ++A  LF+ MK  G    +++Y++L+ G C  G  E A  L  EM  +G   
Sbjct: 251 ALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQG--V 308

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PNVVT+  +I + C +G + EA  +L+ M   G  PN +T ++LI+GFC+ G+L+ A +
Sbjct: 309 QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARE 368

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L   + + G      CY+ L+    +T +++EA KL++ ML  G +PD      ++  L 
Sbjct: 369 LFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLF 428

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
            GG+V +   L+  ++  G     D  I+ + L GLC+     EA +L   +    I L 
Sbjct: 429 QGGKVGDAKKLFGVMKVYGIPG--DLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLD 486

Query: 448 GPYVDKIVEHLKKSGD----EELITNLPK 472
               + +++ L K+G      EL   LP+
Sbjct: 487 IECFNCLIDGLCKAGKLETAWELFEKLPQ 515



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 148/305 (48%), Gaps = 6/305 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K +  ++  ++  +M    + PD    N ++   C    +     +M G+      PDI+
Sbjct: 108 KIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIV 167

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY ++IKG C   R+  A  LF  M++ GC  N + Y  L+ G+CR G++  AL+L  EM
Sbjct: 168 TYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEM 227

Query: 261 EKE----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             +    G +  P V++Y+ +I   C      EA  + + M+  G  P  ++ ++LI GF
Sbjct: 228 LNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGF 287

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G  +EA +L +++V  G   +   ++ L+  L +  ++ EA+ L   M+  G+ P+ 
Sbjct: 288 CCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNL 347

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           L  + +I   CL G +     L+  +   G     D   ++VL+ G C+ +   EA KL 
Sbjct: 348 LTYNSLIEGFCLVGDLNSARELFVSMPSKG--CEPDVICYTVLINGYCKTSKVEEAMKLY 405

Query: 437 RFMLK 441
             ML+
Sbjct: 406 NGMLQ 410



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 160/348 (45%), Gaps = 40/348 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K R  +EA  +  +M    + P  I Y ++I  FC  G    A  L   M   
Sbjct: 248 IIDALC-KDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQ 306

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+++T+  +I   C  G++ +A  L +VM + G   NL+ Y++L++G C +G +  A
Sbjct: 307 GVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSA 366

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL- 312
            EL   M  +G  C P+V+ YT +I  +C    ++EA+ + + M  +G  P+  T   L 
Sbjct: 367 RELFVSMPSKG--CEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALL 424

Query: 313 ----------------------------------IKGFCVEGNLDEAYQLIDKVVAGGSV 338
                                             + G C  G L EA +L +K+ +    
Sbjct: 425 TGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIK 484

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
               C++ L+  L +  +L+ A +LF K+    ++PD +  ++MI E C GGQV++   L
Sbjct: 485 LDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANIL 544

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           ++ +EK G   + D   ++ L+ G        +  +L   M+++ + L
Sbjct: 545 FQKMEKNG--CTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSL 590



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 69/129 (53%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EAM +  K+  ++++ D   +N +I   C+ G +  A EL + +   +L PD++TY  MI
Sbjct: 470 EAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMI 529

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
             FC  G++  A  LF+ M+++GC  + + Y+ L+ G      +E+ +ELL  M +    
Sbjct: 530 HEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVS 589

Query: 267 CSPNVVTYT 275
              N++ + 
Sbjct: 590 LDVNILRHN 598



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 47/241 (19%)

Query: 203 VSMIKGFCNAGRLE--DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           +SM    C  G +    A   F +M        L +++ LL G+ ++    +   L  +M
Sbjct: 63  LSMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQM 122

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G   SP+  T   ++   C    + E L ++  +   G  P+ VT +TLIKG C+E 
Sbjct: 123 RLSG--ISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCME- 179

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
                                              R+ +A  LF++M   G  P+ +   
Sbjct: 180 ----------------------------------HRISKAALLFTRMQKLGCTPNAITYG 205

Query: 381 VMIRELCLGGQVLEGFCLYED------IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
            +++ LC  G +     L+++      +  I F   V S  +S+++  LC+     EA  
Sbjct: 206 TLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVIS--YSIIIDALCKDRREDEARD 263

Query: 435 L 435
           L
Sbjct: 264 L 264



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 317 CVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           C  GN+   +A+Q    ++          ++ L+  L + K   +   L+++M  SG+ P
Sbjct: 70  CKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D    ++++  LC   +V EG  +   I + G++  + +  ++ L+ GLC ++   +AA 
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVT--YTTLIKGLCMEHRISKAAL 187

Query: 435 LARFMLK 441
           L   M K
Sbjct: 188 LFTRMQK 194


>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
          Length = 802

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 139/307 (45%), Gaps = 40/307 (13%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           KE G V        + ++  K   A+EA+W L+   E   R D + Y+ ++   C++G M
Sbjct: 375 KEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRM 434

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A +L+  M   D  PD++TY +++ GFC  G ++ A  L +VM  HG   N V+Y+AL
Sbjct: 435 SEAKDLINEM---DCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTAL 491

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV----------------------- 277
           L+G+CR G    A E++   E+     SPN +TY+ +                       
Sbjct: 492 LNGMCRTGKSLEAREMMNMSEEHW--WSPNSITYSVIMHGLRREGKLSEACDVVREMVLK 549

Query: 278 ------------IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
                       +Q  C  G   EA   ++     GCA N V  +T+I GFC    LD A
Sbjct: 550 GFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAA 609

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             ++D +      +    Y++LV  L +  R+ EA +L  KML  G+ P  +    +I  
Sbjct: 610 LSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHR 669

Query: 386 LCLGGQV 392
            C  G+V
Sbjct: 670 YCQMGKV 676



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 183/378 (48%), Gaps = 13/378 (3%)

Query: 75  QMGIRFFIWAALQSSYRHSSFMYNRACEM---SRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           ++ ++FF WA  Q  YRH   +Y    E+   +++ Q    ++ ++   K  G   + + 
Sbjct: 188 RVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLM---KRRGIYRTPEA 244

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
              +     +A    +A+ VL  M    + P+ +I N  I +F     +  A   ++ M 
Sbjct: 245 FSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQ 304

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           ++ + P+++TY  MI+G+C+  R+E+A  L + M   GC  + V+Y  ++  +C+   + 
Sbjct: 305 VVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIV 364

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
              +L+ +M KE G   P+ VTY ++I +        EAL  L   +  G   +++  S 
Sbjct: 365 EVRDLMKKMAKEHG-LVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSA 423

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           ++   C EG + EA  LI+++     V +   Y+++V    R   + +A+KL   M   G
Sbjct: 424 IVHALCKEGRMSEAKDLINEMDCPPDVVT---YTAVVNGFCRLGEVDKAKKLLQVMHTHG 480

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
            KP+ ++ + ++  +C  G+ LE   +    E+  +  S +S  +SV++ GL R+    E
Sbjct: 481 HKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWW--SPNSITYSVIMHGLRREGKLSE 538

Query: 432 AAKLARFMLKKRIWLQGP 449
           A  + R M+ K  +  GP
Sbjct: 539 ACDVVREMVLKG-FFPGP 555



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 162/346 (46%), Gaps = 14/346 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMP-EF 158
           C++ R+++     I+++E    +GC+   V    ++  LC++ R+  E   +++KM  E 
Sbjct: 323 CDLHRVEE----AIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIV-EVRDLMKKMAKEH 377

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            L PD + YN +I +  +      A   +K         D + Y +++   C  GR+ +A
Sbjct: 378 GLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEA 437

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L   M    C  ++V Y+A+++G CRLG +++A +LL  M   G    PN V+YT+++
Sbjct: 438 KDLINEMD---CPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGH--KPNTVSYTALL 492

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C  G   EA  +++  E    +PN +T S ++ G   EG L EA  ++ ++V  G  
Sbjct: 493 NGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFF 552

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                 + L+  L R  R  EA K   + L  G   + +  + +I   C   ++     +
Sbjct: 553 PGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSV 612

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            +D+  I      D   ++ L+  L +K    EA +L + ML K I
Sbjct: 613 LDDMYLIN--KHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGI 656



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 14/255 (5%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM-----KGMGLIDLYPDII 200
           +EA  V+R+M      P  +  N +++  C  G    A + M     KG  +     +++
Sbjct: 537 SEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAI-----NVV 591

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            + ++I GFC    L+ A  +   M      A++  Y+ L+D + + G +  A EL+ +M
Sbjct: 592 NFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKM 651

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G D +P  VTY +VI  +C  G + + + IL++M  +     R   + +I+  CV G
Sbjct: 652 LHKGIDPTP--VTYRTVIHRYCQMGKVDDLVAILEKM--ISRQKCRTIYNQVIEKLCVLG 707

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            L+EA  L+ KV+   S S      +L+   ++      A K+  +M    + PD   C 
Sbjct: 708 KLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCE 767

Query: 381 VMIRELCLGGQVLEG 395
            + + L L G+V E 
Sbjct: 768 KLSKRLVLKGKVDEA 782



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 98/216 (45%), Gaps = 5/216 (2%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           + + +  VI  FC+  ++ AA  ++  M LI+ + D+ TY +++      GR+ +A  L 
Sbjct: 589 NVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELM 648

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           K M   G     V Y  ++   C++G ++  + +L +M      C      Y  VI+  C
Sbjct: 649 KKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISR-QKCR---TIYNQVIEKLC 704

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G ++EA  +L ++       +  T   L++G+  +G    AY++  ++     +    
Sbjct: 705 VLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIPDVK 764

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASG-VKPDGL 377
               L   LV   ++ EA+KL  +++  G + P  L
Sbjct: 765 MCEKLSKRLVLKGKVDEADKLMLRLVERGHISPQSL 800


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 169/333 (50%), Gaps = 7/333 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K+R +NEA  +L +M   +L+P+ ++Y N+I  F  +G+   A +++K M   
Sbjct: 298 LINGLC-KSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA 356

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ ITY ++++G C  G+++ A  L K M R     + + Y+ +++G  R  S + A
Sbjct: 357 GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDA 416

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL EME  G   SPNV TY+ +I   C  G  ++A  +L+ M   G  PN    + LI
Sbjct: 417 FRLLSEMENAG--ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 474

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C EGN+  A ++ DK+     +    CY+SL+  L +  R++E+ K F++M   G+ 
Sbjct: 475 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 534

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE-A 432
           P+    S +I      G +     L + +   G      +D+  + LL    K+  +E  
Sbjct: 535 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKP---NDVIYIDLLESYFKSDDIEKV 591

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           +   + ML + + L       ++ +L  SG+ E
Sbjct: 592 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNME 624



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 174/374 (46%), Gaps = 23/374 (6%)

Query: 106 IKQNPSIIIDVVEAYKEEG-----CVVSVKMMKV------------IFNLCEKARLANEA 148
           +K N  +   ++  Y  EG     C +  KM KV            IF L +  R+  E+
Sbjct: 463 LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRV-EES 521

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
                +M E  L P+   Y+ +I  + + GD+ +A++L++ M    L P+ + Y+ +++ 
Sbjct: 522 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLES 581

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           +  +  +E     FK M   G   +   Y  L+  +   G+ME A  +L  +EK G    
Sbjct: 582 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNG--SV 639

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P+V  Y+S+I   C     ++A GILD M   G  PN V  + LI G C  G++  A  +
Sbjct: 640 PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNV 699

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            + ++A G V +   Y+SL+    +   +  A  L+++MLA+G+ PD    SV+      
Sbjct: 700 FNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSS 759

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
            G + +   L E++   G  +S+ S   + L+ G C++    E  KL   ++ + +    
Sbjct: 760 AGDLEQAMFLIEEMFLRGH-ASISS--FNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNA 816

Query: 449 PYVDKIVEHLKKSG 462
             ++ I+  L ++G
Sbjct: 817 LTIENIISGLSEAG 830



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 150/328 (45%), Gaps = 24/328 (7%)

Query: 116 VVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           V+   ++ G V  V +   +I  LC+ A    +A  +L +M +  + P+ + YN +I   
Sbjct: 629 VLSGIEKNGSVPDVHVYSSLISGLCKTAD-REKAFGILDEMSKKGVDPNIVCYNALIDGL 687

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ GD+  A  +   +    L P+ +TY S+I G C  G + +A  L+  M   G   + 
Sbjct: 688 CKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA 747

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             YS L  G    G +E+A+ L+ EM   G     ++ ++ +++  FC +G M+E L +L
Sbjct: 748 FVYSVLTTGCSSAGDLEQAMFLIEEMFLRG---HASISSFNNLVDGFCKRGKMQETLKLL 804

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             +   G  PN +TI  +I G    G L E + +  ++    S S+   +SSL ++++  
Sbjct: 805 HVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQ 864

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            ++     +   M+    K   L  ++M+R++ +      G   Y        L+ VD+ 
Sbjct: 865 GKIP--LDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSY--------LAIVDN- 913

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK 442
                   LCRK    EA  L + M K+
Sbjct: 914 --------LCRKGKLSEALNLLKEMDKR 933



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 35/193 (18%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTII--YNNVIRLFCEKGDMIAADELMK--- 188
           V+   C  A    +AM+++ +M    LR    I  +NN++  FC++G M    +L+    
Sbjct: 752 VLTTGCSSAGDLEQAMFLIEEM---FLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIM 808

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL-------- 240
           G GL+   P+ +T  ++I G   AG+L +   +F  +++    +    +S+L        
Sbjct: 809 GRGLV---PNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQG 865

Query: 241 ---LDGI-------CRLGSMERALELLGEMEKEGGD--CSPNVVTYTSVIQIFCGKGMMK 288
              LD +       C+ G++++AL L   +  +     CS    +Y +++   C KG + 
Sbjct: 866 KIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCS----SYLAIVDNLCRKGKLS 921

Query: 289 EALGILDRMEALG 301
           EAL +L  M+  G
Sbjct: 922 EALNLLKEMDKRG 934



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           MI+  C  G L+ A  L  V+          +Y A++D +CR G +  AL LL EM+K  
Sbjct: 875 MIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKR- 933

Query: 265 GDCSPNVVT 273
           G+  P +V 
Sbjct: 934 GNLQPTLVA 942



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           + ++ + V G +    G + S +    + +    A+K+  +M   G   + +  +V+I  
Sbjct: 209 HSVLQRAVEGSAAR--GRHGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAG 266

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           LC  G V E F   +D+E  G +   D   +  L+ GLC+   S EA  L
Sbjct: 267 LCRSGAVEEAFGFKKDMEDYGLVP--DGFTYGALINGLCKSRRSNEAKAL 314


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 161/309 (52%), Gaps = 5/309 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI   C +A L ++A+ V  +M      PD + YN ++   C++  ++ A+ L+  M   
Sbjct: 22  VIGGFC-RAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRER 80

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ T+ ++I G+C  G+L+ A  LF  M       ++V Y+ L+DG+CR G +++A
Sbjct: 81  GVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKA 140

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  +M     +  PN VTY+ +I   C KG +++A G LD M   G  PN +T +++I
Sbjct: 141 NDLWDDMHSR--EIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSII 198

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           KG+C  GN+ +  + + K++          Y++L+   ++  ++ +A KL + M    V+
Sbjct: 199 KGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQ 258

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  +++I    + G V E   ++E +   G     D   +  ++ G     +S EA 
Sbjct: 259 PDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI--EPDRYTYMSMINGHVTAGNSKEAF 316

Query: 434 KLARFMLKK 442
           +L   ML++
Sbjct: 317 QLHDEMLQR 325



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 14/301 (4%)

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADELMKGMGLIDLYPDIITYVSM 205
           M  LR+M  F L PD +IY  VI  FC  G   D +   + M G G +   PD++TY ++
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCL---PDVVTYNTL 57

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + G C   RL DA GL   M+  G   +L  ++ L+ G C  G +++AL+L   M  +  
Sbjct: 58  LNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ-- 115

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P++VTY ++I   C +G + +A  + D M +    PN VT S LI   C +G +++A
Sbjct: 116 RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDA 175

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           +  +D+++  G + +   Y+S++    R+  + + +K   KM+ + V PD +  + +I  
Sbjct: 176 FGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHG 235

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKR 443
                ++ + F L   +EK      V  D+  +++L+ G     +  EA  +   M  K 
Sbjct: 236 YIKEDKMHDAFKLLNMMEK----EKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKG 291

Query: 444 I 444
           I
Sbjct: 292 I 292



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 127/242 (52%), Gaps = 3/242 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C + +L ++A+ +   M    LRPD + YN +I   C +GD+  A++L   M   
Sbjct: 92  LIHGYCIEGKL-DKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSR 150

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +++P+ +TY  +I   C  G++EDA G    M   G   N++ Y++++ G CR G++ + 
Sbjct: 151 EIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKG 210

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            + L +M       SP+++TY ++I  +  +  M +A  +L+ ME     P+ VT + LI
Sbjct: 211 QKFLQKMMVN--KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLI 268

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GF V GN+ EA  + +K+ A G       Y S++   V     KEA +L  +ML  G  
Sbjct: 269 NGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFA 328

Query: 374 PD 375
           PD
Sbjct: 329 PD 330



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 140/285 (49%), Gaps = 4/285 (1%)

Query: 124 GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC+  V     + N LC++ RL  +A  +L +M E  + PD   +  +I  +C +G +  
Sbjct: 46  GCLPDVVTYNTLLNGLCKERRLL-DAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDK 104

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +L   M    L PDI+TY ++I G C  G L+ A  L+  M       N V YS L+D
Sbjct: 105 ALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID 164

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
             C  G +E A   L EM  +G    PN++TY S+I+ +C  G + +    L +M     
Sbjct: 165 SHCEKGQVEDAFGFLDEMINKG--ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 222

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
           +P+ +T +TLI G+  E  + +A++L++ +           Y+ L+        ++EA  
Sbjct: 223 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 282

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +F KM A G++PD      MI      G   E F L++++ + GF
Sbjct: 283 IFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGF 327


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 181/349 (51%), Gaps = 10/349 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I V      +G   +VK    + +   KA    ++ WV   M +  + PD  +++  I  
Sbjct: 264 IGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINA 322

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+ G +  A +L   M  + + P+++TY ++I G C  G L++A    + M + G  A 
Sbjct: 323 FCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNAT 382

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           L+ YS L++G+ +L     A  +L E  ++G   +PN V Y ++I  +C  G + +AL I
Sbjct: 383 LITYSVLINGLMKLEKFNEANSVLKETLEKG--FTPNEVVYNTLIDGYCKMGNLGDALRI 440

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M + G  PN VT++++I+GFC  G +++A  +++++++ G   + G +++++  L  
Sbjct: 441 RGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCM 500

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             R + A +   +ML   ++P+    + ++  LC  G+  +   L+  + + GF +++ +
Sbjct: 501 NSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVT 560

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              + L+ GLC+  +  EA +L + ML++     G  +DKI  +   SG
Sbjct: 561 T--NALIHGLCKTGNMQEAVRLLKKMLER-----GFVLDKITYNTLISG 602



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 136/290 (46%), Gaps = 4/290 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G V+       + + C K     E   +  +M +  + PDT  YN +I   C  G + 
Sbjct: 586 ERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLD 645

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  L       DL P++ TY  MI G+C A ++E+   LF  +       N V Y+ L+
Sbjct: 646 EAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLI 705

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
              CR G+   A +L  +M  +G    P   TY+S+I   C  G M++A  ++D M   G
Sbjct: 706 RAYCRNGNTVEAFKLHDDMRSKG--IPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEG 763

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN V  + LI G+C  G +D+   ++ ++ +     +   Y+ ++    ++  +K A 
Sbjct: 764 LLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAA 823

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           KL  +M+  G+ PD +  +V+    C  G++ EG  L ED   +GF S +
Sbjct: 824 KLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAED--GVGFNSPL 871



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 148/299 (49%), Gaps = 9/299 (3%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPE--FDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           SV +  +I   C+  ++  +A  +L +M    F + P    +  +I   C      +A  
Sbjct: 453 SVTLNSIIQGFCKIGQM-EQAECILEEMLSRGFSINPGA--FTTIIHWLCMNSRFESALR 509

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
            ++ M L ++ P+     +++ G C  G+  DA  L+  +   G  ANLV  +AL+ G+C
Sbjct: 510 FLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLC 569

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G+M+ A+ LL +M + G     + +TY ++I   C +G ++E   +   M   G  P+
Sbjct: 570 KTGNMQEAVRLLKKMLERGFVL--DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPD 627

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
             T + LI G C  G LDEA  L ++  +   V +   Y  ++    +  +++E EKLF+
Sbjct: 628 TFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFT 687

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           ++L   ++ + +  + +IR  C  G  +E F L++D+   G   +  +  +S L+ G+C
Sbjct: 688 ELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTAT--YSSLIHGMC 744



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 155/335 (46%), Gaps = 15/335 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM-----K 188
           +I  LC  +R  + A+  LR+M   ++RP+  +   ++   C++G    A EL      K
Sbjct: 494 IIHWLCMNSRFES-ALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK 552

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
           G G      +++T  ++I G C  G +++A  L K M   G   + + Y+ L+ G C+ G
Sbjct: 553 GFG-----ANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEG 607

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E   +L GEM K+G    P+  TY  +I   C  G + EA+ + +  ++    PN  T
Sbjct: 608 KVEEGFKLRGEMVKQG--IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYT 665

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
              +I G+C    ++E  +L  +++      +   Y++L+    R     EA KL   M 
Sbjct: 666 YGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR 725

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           + G+ P     S +I  +C  G++ +  CL +++ K G L +V    ++ L+ G C+   
Sbjct: 726 SKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVC--YTALIGGYCKLGQ 783

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             +   + + M    I         +++   KSGD
Sbjct: 784 MDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGD 818



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 137/300 (45%), Gaps = 42/300 (14%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D++ +V   + F N G   +A G+F+ +   G    +   + LL  + +   +E++  + 
Sbjct: 245 DLLIHVYCTQ-FRNVG-FRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVF 302

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M +     SP+V  +++ I  FC  G +++A+ +   ME LG +PN VT + LI G C
Sbjct: 303 ETMRQ---GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLC 359

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA--------EKLFSK--- 366
             GNLDEA++  +K+V  G  ++   YS L+  L++ ++  EA        EK F+    
Sbjct: 360 KHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEV 419

Query: 367 ------------------------MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
                                   M++ G+ P+ +  + +I+  C  GQ+ +  C+ E++
Sbjct: 420 VYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEM 479

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              GF  S++    + ++  LC  +    A +  R ML + +      +  +V  L K G
Sbjct: 480 LSRGF--SINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEG 537


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 166/334 (49%), Gaps = 11/334 (3%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKAR----LANEAMWVLRKMPEFDLRPDTIIYNN 169
           ID   A  EE     +K   V++N   K      L  +A+ ++  M +  + PD   YN 
Sbjct: 344 IDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNL 403

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           VI   C+ G +  A+ L+         PDI T+ ++I G+C   ++++A G+   M  HG
Sbjct: 404 VINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHG 463

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              +++ Y+++L+G+C+    E  +E    + ++G  C PN++TY  +I+  C    + E
Sbjct: 464 VTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKG--CLPNIITYNILIESLCKARKVTE 521

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-SSGGCYSSLV 348
           AL +L+ +   G  P+ V+  T+I GFC  G+LDEAYQL  ++     +  +   Y+ ++
Sbjct: 522 ALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMI 581

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF-CLYEDIEKIGF 407
                   +  A+KLF +M   G  PD     VMI   C  G V  G+  L ++IE IGF
Sbjct: 582 NAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIE-IGF 640

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           + S+ +     ++  LC ++   EA  +   M++
Sbjct: 641 VPSLTT--FGRVINCLCVQHRVHEAVGIVHLMVR 672



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 147/308 (47%), Gaps = 10/308 (3%)

Query: 138 LCEKARL--AN----EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
           LC K  L  AN    EA   L KM    L PD   YN +I  + + G +  A  ++K   
Sbjct: 261 LCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAK 320

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
                PD  TY S+I G C  G ++ A  LF+     G   ++V Y+ L+ G+ + G + 
Sbjct: 321 FKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVL 380

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
           +AL+L+ +M KEG   SP++ TY  VI   C  G + +A  +L+   A G  P+  T +T
Sbjct: 381 KALQLMNDMSKEG--MSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNT 438

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           LI G+C    +D A  ++D + + G       Y+S++  L +  + ++  + F  ++  G
Sbjct: 439 LIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKG 498

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
             P+ +  +++I  LC   +V E   L E+I   G +   D      ++ G C      E
Sbjct: 499 CLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIP--DPVSFGTVISGFCNNGDLDE 556

Query: 432 AAKLARFM 439
           A +L R M
Sbjct: 557 AYQLFRRM 564



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 38/252 (15%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD   +N +I  +C++  M  A  ++  M    + PD+ITY S++ G C A + ED    
Sbjct: 431 PDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMET 490

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           FK++   GC  N++ Y+ L++ +C+   +  AL+LL E+   G    P+ V++ +VI  F
Sbjct: 491 FKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRG--LIPDPVSFGTVISGF 548

Query: 282 CGKGMMKEALGILDRMEAL------------------------------------GCAPN 305
           C  G + EA  +  RME                                      GC P+
Sbjct: 549 CNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPD 608

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
             T   +I GFC  GN++  Y  + K +  G V S   +  ++  L    R+ EA  +  
Sbjct: 609 SYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVH 668

Query: 366 KMLASGVKPDGL 377
            M+ +GV P+ +
Sbjct: 669 LMVRTGVVPEAV 680



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 145/319 (45%), Gaps = 11/319 (3%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +DV E      C  S+     I N+  +    N+A  V  +M    + PD   +   I+ 
Sbjct: 96  VDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKS 155

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC     +AA  L+  M       + + Y ++I GF       +A  LF  M R G   +
Sbjct: 156 FCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPH 215

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK----- 288
           +  ++ L+  +C+ G ++   +LL ++ K G    PN+ T+   IQ  C KG+++     
Sbjct: 216 IATFNKLMHILCKKGHLQEGEKLLNKVLKNG--VCPNLFTFNIFIQGLCRKGVLEGANSK 273

Query: 289 --EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
             EA   L +M   G  P+  T +T+I G+   G + +A +++      G V     Y S
Sbjct: 274 VVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCS 333

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L++ + +   +  A  LF + L  G+KP  +  + +I+ L   G VL+   L  D+ K G
Sbjct: 334 LIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEG 393

Query: 407 FLSSVDSDIHSVLLLGLCR 425
              S D   +++++ GLC+
Sbjct: 394 M--SPDIWTYNLVINGLCK 410



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 136/310 (43%), Gaps = 15/310 (4%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ V  +M  ++  P    YN ++ +  E G    A ++   M    + PD+ T+   I
Sbjct: 94  EAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRI 153

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           K FC   R   A  L   M   GC  N V Y  ++ G         A EL  +M + G  
Sbjct: 154 KSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLG-- 211

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD--- 323
             P++ T+  ++ I C KG ++E   +L+++   G  PN  T +  I+G C +G L+   
Sbjct: 212 IFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGAN 271

Query: 324 ----EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
               EA   + K+V  G       Y++++    +  ++++A ++       G  PD    
Sbjct: 272 SKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTY 331

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
             +I  +C  G +     L+E+    G   S+   +++ L+ GL ++   ++A +L   M
Sbjct: 332 CSLIIGVCQDGDIDHALALFEEALGKGLKPSI--VLYNTLIKGLSQQGLVLKALQLMNDM 389

Query: 440 LKK----RIW 445
            K+     IW
Sbjct: 390 SKEGMSPDIW 399



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 107/195 (54%), Gaps = 3/195 (1%)

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            YVS ++ +   G++++A  +F+ M  + C  ++ +Y+A+++ +   G   +A ++   M
Sbjct: 78  VYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRM 137

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           + EG   +P+V T+T  I+ FC       AL +L+ M + GC  N V   T+I GF  E 
Sbjct: 138 KHEG--IAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEEN 195

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
              EAY+L +K++  G       ++ L+  L +   L+E EKL +K+L +GV P+    +
Sbjct: 196 YQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFN 255

Query: 381 VMIRELCLGGQVLEG 395
           + I+ LC  G VLEG
Sbjct: 256 IFIQGLCRKG-VLEG 269



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 11/286 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L  MP      + ++Y  VI  F E+   + A EL   M  + ++P I T+  ++ 
Sbjct: 165 ALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMH 224

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME-------RALELLGEM 260
             C  G L++   L   + ++G   NL  ++  + G+CR G +E        A   L +M
Sbjct: 225 ILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKM 284

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G    P+  TY ++I  +   G +++A  IL   +  G  P+  T  +LI G C +G
Sbjct: 285 VNKG--LEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDG 342

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           ++D A  L ++ +  G   S   Y++L+  L +   + +A +L + M   G+ PD    +
Sbjct: 343 DIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYN 402

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           ++I  LC  G V +   L       G+L  + +   + L+ G C++
Sbjct: 403 LVINGLCKMGCVSDANNLLNAAIAKGYLPDIFT--FNTLIDGYCKR 446



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 123/267 (46%), Gaps = 11/267 (4%)

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
           +Y + +R +  KG +  A ++ + M   +  P I +Y +++      G    A  ++  M
Sbjct: 78  VYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRM 137

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
           K  G A ++  ++  +   CR      AL LL  M  +G  C  N V Y +VI  F  + 
Sbjct: 138 KHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQG--CELNAVVYCTVISGFYEEN 195

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
              EA  + ++M  LG  P+  T + L+   C +G+L E  +L++KV+  G   +   ++
Sbjct: 196 YQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFN 255

Query: 346 SLVVELVR-------TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
             +  L R         ++ EAE    KM+  G++PD    + +I      G++ +   +
Sbjct: 256 IFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRI 315

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            +D +  GF+   D   +  L++G+C+
Sbjct: 316 LKDAKFKGFVP--DEFTYCSLIIGVCQ 340



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 6/198 (3%)

Query: 115 DVVEAYK---EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           DV+E +K   E+GC+ ++    ++     KAR   EA+ +L ++    L PD + +  VI
Sbjct: 486 DVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVI 545

Query: 172 RLFCEKGDMIAADELMKGM-GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
             FC  GD+  A +L + M     +   + TY  MI  F     ++ A  LF  M   GC
Sbjct: 546 SGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGC 605

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             +   Y  ++DG C++G++    + L + E E G   P++ T+  VI   C +  + EA
Sbjct: 606 DPDSYTYRVMIDGFCKVGNVNSGYDFLLK-EIEIG-FVPSLTTFGRVINCLCVQHRVHEA 663

Query: 291 LGILDRMEALGCAPNRVT 308
           +GI+  M   G  P  V 
Sbjct: 664 VGIVHLMVRTGVVPEAVV 681


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 149/271 (54%), Gaps = 4/271 (1%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
            N +  + V E  K++G   SV     +I  LC + ++  E + ++ +M +  L P+ I 
Sbjct: 278 SNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKV-EEGVKLMEEMEDLGLSPNEIT 336

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           +  V++ FC+KG M  A++ + GM   ++ PD++ Y  +I G+   G++EDA  + + M 
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMA 396

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           + G + N+  Y+ L+ G  R G    A  LL EM+++G     +VVTY  +I   C KG 
Sbjct: 397 KKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKG--IEADVVTYNVLIGALCCKGE 454

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +++A+ +LD M  +G  PN +T +T+I+GFC +GN+  AY++  ++      ++   Y+ 
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNV 514

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +    +  ++ EA  L ++ML   + P+G+
Sbjct: 515 FIKYFCQIGKMDEANDLLNEMLDKCLVPNGI 545



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 159/313 (50%), Gaps = 8/313 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADELMKGM 190
           VI  LC   +L  +A  V + +  + L P    YN++I  +C+KG   +M   D L+K M
Sbjct: 197 VISGLCRIGQL-RKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEM 255

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + P  +T+  +I G+C       A  +F+ MK+ G AA++V Y++L+ G+C  G +
Sbjct: 256 VEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKV 315

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E  ++L+ EME  G   SPN +T+  V++ FC KGMM +A   +D M      P+ V  +
Sbjct: 316 EEGVKLMEEMEDLG--LSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYT 373

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            LI G+   G +++A  + + +   G   +   Y+ L+    R+   + A  L  +M   
Sbjct: 374 ILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK 433

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G++ D +  +V+I  LC  G+V +   L +++ ++G     +   ++ ++ G C K +  
Sbjct: 434 GIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGL--EPNHLTYNTIIQGFCDKGNIK 491

Query: 431 EAAKLARFMLKKR 443
            A ++   M K R
Sbjct: 492 SAYEIRTRMEKCR 504



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 124/275 (45%), Gaps = 38/275 (13%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR---LGSMERA 253
           PDI T+ ++I G C  G+L  A  + K +K  G A ++  Y++L+DG C+    G+M   
Sbjct: 189 PDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 254 LELLGEMEKEG-------------GDC--------------------SPNVVTYTSVIQI 280
             LL EM + G             G C                    + +VVTY S+I  
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISG 308

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G ++E + +++ ME LG +PN +T   ++KGFC +G + +A   ID +        
Sbjct: 309 LCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPD 368

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ L+    R  ++++A  +   M   G+ P+    + +I      G       L +
Sbjct: 369 VVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLD 428

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           ++++ G     D   ++VL+  LC K    +A KL
Sbjct: 429 EMKEKGI--EADVVTYNVLIGALCCKGEVRKAVKL 461



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 128/272 (47%), Gaps = 11/272 (4%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P   +  +++ G   A R++ A   F+   R   + ++  ++ ++ G+CR+G + +A ++
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFC---GKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +++  G   +P+V TY S+I  +C   G G M     +L  M   G +P  VT   LI
Sbjct: 214 AKDIKAWG--LAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C   N   A ++ +++   G  +S   Y+SL+  L    +++E  KL  +M   G+ 
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVE 431
           P+ +    +++  C  G + +     + + +     +V+ D  I+++L+ G  R     +
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTE----RNVEPDVVIYTILIDGYRRLGKMED 387

Query: 432 AAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           A  +   M KK I       + ++    +SGD
Sbjct: 388 AMAVKEAMAKKGISPNVTTYNCLITGFSRSGD 419



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +++  KE+G    V    V+   LC K  +  +A+ +L +M E  L P+ + YN +I+ F
Sbjct: 426 LLDEMKEKGIEADVVTYNVLIGALCCKGEV-RKAVKLLDEMSEVGLEPNHLTYNTIIQGF 484

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+KG++ +A E+   M       +++TY   IK FC  G++++A  L   M       N 
Sbjct: 485 CDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNG 544

Query: 235 VAYSALLDGICRLG 248
           + Y  + +G+   G
Sbjct: 545 ITYETIKEGMMEKG 558


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 178/355 (50%), Gaps = 7/355 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           + G  ++V +  ++ N  C++  ++ +A  V  ++ +  L+P  + +N +I  +C+ G++
Sbjct: 233 DAGFPLNVYVFNILMNKFCKEGNIS-DAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNL 291

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
                L   M      PD+ TY ++I   C   +++ A GLF  M + G   N V ++ L
Sbjct: 292 DEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTL 351

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G  R G ++   E   +M  +G    P++V Y +++  FC  G +  A  I+D M   
Sbjct: 352 IHGHSRNGEIDLMKESYQKMLSKG--LQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRR 409

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P+++T +TLI GFC  G+++ A ++  ++   G       +S+LV  + +  R+ +A
Sbjct: 410 GLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDA 469

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           E+   +ML +G+KPD +  ++M+   C  G    GF L ++++  G + SV +  ++VLL
Sbjct: 470 ERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVT--YNVLL 527

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE-HLKKSGDEELITNLPKIG 474
            GLC+      A  L   ML   +       + ++E H + +   +     P+IG
Sbjct: 528 NGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEIG 582



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 156/323 (48%), Gaps = 21/323 (6%)

Query: 30  SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSS 89
           S A++ +  + K   +++ T+ +    ++  C +  L   F  + QM          +S 
Sbjct: 257 SDAQKVFDEITKR--SLQPTVVSFNTLINGYCKVGNLDEGFRLKHQME---------KSR 305

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
            R   F Y+ A   +  K+N    +D      +E C   +    VIF         N  +
Sbjct: 306 TRPDVFTYS-ALINALCKENK---MDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEI 361

Query: 150 WVLR----KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            +++    KM    L+PD ++YN ++  FC+ GD++AA  ++ GM    L PD ITY ++
Sbjct: 362 DLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTL 421

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GFC  G +E A  + K M ++G   + V +SAL+ G+C+ G +  A   L EM + G 
Sbjct: 422 IDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAG- 480

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+ VTYT ++  FC KG  +    +L  M++ G  P+ VT + L+ G C  G +  A
Sbjct: 481 -IKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNA 539

Query: 326 YQLIDKVVAGGSVSSGGCYSSLV 348
             L+D ++  G V     Y++L+
Sbjct: 540 DMLLDAMLNIGVVPDDITYNTLL 562


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 150/283 (53%), Gaps = 4/283 (1%)

Query: 121 KEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           KEE C   SV    +I  LCE  RL  EA  + ++M E   +P T  Y  +I+  C+ G 
Sbjct: 257 KEENCRPNSVTYSILIHGLCEAGRL-EEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGM 315

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
              A +++  M      P++ TY  +I   C  G++E+A G+F+ M +HG    ++ ++A
Sbjct: 316 TDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNA 375

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L++G C+ G +  A +LL  MEK  G+C PN+ TY  +++  C      +A  +L R+  
Sbjct: 376 LINGYCKEGWVVSAFQLLSVMEK--GNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD 433

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  P+RVT + L+ GFC EG L+ A+ + + + + G    G  +++L+  L +  RL++
Sbjct: 434 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 493

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           A  +   M+  G+  D +  + +I   C  G+  +   L+E++
Sbjct: 494 ANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENM 536



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 144/285 (50%), Gaps = 5/285 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIKGFCNAGRLEDACGL 221
           DT +  +++   C + D+  A  + + M    +  P+ +TY  +I G C AGRLE+A  L
Sbjct: 228 DTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQL 287

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M   GC  +   Y+ L+   C +G  ++A+++L EM  +   C PNV TYT +I   
Sbjct: 288 KQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKA--CVPNVHTYTILIDRL 345

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C +G ++EA G+  +M   G  P  +T + LI G+C EG +  A+QL+  +  G    + 
Sbjct: 346 CREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNI 405

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y+ L+  L R  +  +A  L  +++ +G+ PD +  ++++   C  GQ+   F ++  
Sbjct: 406 RTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNS 465

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           +   G     D    + L+ GLC+     +A  +   M+KK I L
Sbjct: 466 MNSAGL--EPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISL 508



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 162/359 (45%), Gaps = 56/359 (15%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C++ +L N A  +   M    L PD   +  +I   C+ G +  A+ ++  M    +  
Sbjct: 450 FCKEGQL-NMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISL 508

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFK---------------------------------- 223
           D +T+ ++I G C  G+ +D C LF+                                  
Sbjct: 509 DEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAML 568

Query: 224 -VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M ++G   ++V ++ L++G CR G    +L++L  M++ G  CSPNV TYT +I   C
Sbjct: 569 GKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG--CSPNVYTYTIIINGLC 626

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G ++EA  IL  M + G +PN  T + L+K     G LD A+Q++  +V  G   +  
Sbjct: 627 NNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSH 686

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            YS+L+   V +               + +    L+ +  +    L  +  +  CL  +I
Sbjct: 687 IYSALLSGFVLSN--------------TAIGARALSSTGDLDARSLSSEENDNNCLSNEI 732

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
           +K G  +    D+++ L++GLC++   +EA +L + M+K  ++     +  I+EH  K+
Sbjct: 733 KKCGVPT---EDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLF-PDKAISSIIEHYCKT 787



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 11/353 (3%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLA 145
           Q S R  + +    C++    +     + +++    + CV +V    ++ + LC + ++ 
Sbjct: 297 QPSTRTYTVLIKAKCDIGMTDK----AMKMLDEMATKACVPNVHTYTILIDRLCREGKI- 351

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            EA  V RKM +  L P  I +N +I  +C++G +++A +L+  M   +  P+I TY  +
Sbjct: 352 EEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNEL 411

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           ++G C   +   A  L + +  +G   + V Y+ L+DG C+ G +  A  +   M   G 
Sbjct: 412 MEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL 471

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  P+  T+T++I   C  G +++A GIL  M   G + + VT + LI G C  G   + 
Sbjct: 472 E--PDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDV 529

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L + +V    +++   ++  +  L +  +L EA  +  KM+  G+ P  +  +++I  
Sbjct: 530 CFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG 589

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            C  G+      + E +++ G   +V +  +++++ GLC  N  VE A+   F
Sbjct: 590 HCRAGETALSLKMLERMKQAGCSPNVYT--YTIIINGLC-NNGRVEEAETILF 639



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 173/389 (44%), Gaps = 24/389 (6%)

Query: 75  QMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV 134
           ++G+RFF W   QSSY +            RI+     ++ V+ +    G  V+ K + +
Sbjct: 84  ELGVRFFKWVCRQSSYCYDL--------DGRIQ-----LLGVLVSRDLFG--VAQKAVVL 128

Query: 135 IFNLCEKARLAN-EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +   CE +     + M  L  M E   R     Y+ ++    +      A  + + M   
Sbjct: 129 LIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNE 188

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
                 I Y +++   C  G ++ A      + R G   +    ++L+   CR   +  A
Sbjct: 189 GFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEA 248

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +  +M KE  +C PN VTY+ +I   C  G ++EA  +   M   GC P+  T + LI
Sbjct: 249 FRVFEKMSKEE-NCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLI 307

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           K  C  G  D+A +++D++     V +   Y+ L+  L R  +++EA  +F KML  G+ 
Sbjct: 308 KAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLC 367

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P  +  + +I   C  G V+  F L   +EK     ++ +  ++ L+ GLCR + S +A 
Sbjct: 368 PGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRT--YNELMEGLCRVSKSYKA- 424

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
               F+L +R+   G   D++  ++   G
Sbjct: 425 ----FLLLRRVVDNGLLPDRVTYNILVDG 449



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 18/272 (6%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E   E  C+ +        +   K    NEA  +L KM ++ L P  + +  +I   C
Sbjct: 532 LFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHC 591

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G+   + ++++ M      P++ TY  +I G CN GR+E+A  +   M   G + N  
Sbjct: 592 RAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHF 651

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L+    + G ++RA +++  M K G  C PN   Y++++  F    +   A+G   
Sbjct: 652 TYAVLVKAHVKAGRLDRAFQIVSTMVKNG--CQPNSHIYSALLSGFV---LSNTAIGA-R 705

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            + + G    R   S      C+   + +             V +   Y+ LVV L +  
Sbjct: 706 ALSSTGDLDARSLSSEENDNNCLSNEIKKC-----------GVPTEDLYNFLVVGLCKEG 754

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           R+ EA++L   M+  G+ PD  A S +I   C
Sbjct: 755 RIIEADQLTQDMVKHGLFPDK-AISSIIEHYC 785


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 169/333 (50%), Gaps = 7/333 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K+R +NEA  +L +M   +L+P+ ++Y N+I  F  +G+   A +++K M   
Sbjct: 320 LINGLC-KSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA 378

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ ITY ++++G C  G+++ A  L K M R     + + Y+ +++G  R  S + A
Sbjct: 379 GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDA 438

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL EME  G   SPNV TY+ +I   C  G  ++A  +L+ M   G  PN    + LI
Sbjct: 439 FRLLSEMENAG--ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 496

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C EGN+  A ++ DK+     +    CY+SL+  L +  R++E+ K F++M   G+ 
Sbjct: 497 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 556

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE-A 432
           P+    S +I      G +     L + +   G      +D+  + LL    K+  +E  
Sbjct: 557 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKP---NDVIYIDLLESYFKSDDIEKV 613

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           +   + ML + + L       ++ +L  SG+ E
Sbjct: 614 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNME 646



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 174/374 (46%), Gaps = 23/374 (6%)

Query: 106 IKQNPSIIIDVVEAYKEEG-----CVVSVKMMKV------------IFNLCEKARLANEA 148
           +K N  +   ++  Y  EG     C +  KM KV            IF L +  R+  E+
Sbjct: 485 LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRV-EES 543

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
                +M E  L P+   Y+ +I  + + GD+ +A++L++ M    L P+ + Y+ +++ 
Sbjct: 544 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLES 603

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           +  +  +E     FK M   G   +   Y  L+  +   G+ME A  +L  +EK G    
Sbjct: 604 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGS--V 661

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P+V  Y+S+I   C     ++A GILD M   G  PN V  + LI G C  G++  A  +
Sbjct: 662 PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNV 721

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            + ++A G V +   Y+SL+    +   +  A  L+++MLA+G+ PD    SV+      
Sbjct: 722 FNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSS 781

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
            G + +   L E++   G  +S+ S   + L+ G C++    E  KL   ++ + +    
Sbjct: 782 AGDLEQAMFLIEEMFLRGH-ASISS--FNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNA 838

Query: 449 PYVDKIVEHLKKSG 462
             ++ I+  L ++G
Sbjct: 839 LTIENIISGLSEAG 852



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 137/333 (41%), Gaps = 58/333 (17%)

Query: 116 VVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           V+   ++ G V  V +   +I  LC+ A    +A  +L +M +  + P+ + YN +I   
Sbjct: 651 VLSGIEKNGSVPDVHVYSSLISGLCKTAD-REKAFGILDEMSKKGVDPNIVCYNALIDGL 709

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ GD+  A  +   +    L P+ +TY S+I G C  G + +A  L+  M   G   + 
Sbjct: 710 CKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA 769

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             YS L  G    G +E+A+ L+ EM   G     ++ ++ +++  FC +G M+E L +L
Sbjct: 770 FVYSVLTTGCSSAGDLEQAMFLIEEMFLRG---HASISSFNNLVDGFCKRGKMQETLKLL 826

Query: 295 DRMEALGCAPNRVTISTLIKGF-------------------------------------- 316
             +   G  PN +TI  +I G                                       
Sbjct: 827 HVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQ 886

Query: 317 ---------------CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
                          C EGNLD+A  L D +VA  +      Y ++V  L R  +L EA 
Sbjct: 887 GKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEAL 946

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            L  +M   G+ P    C +++  L   G + E
Sbjct: 947 NLLKEMDKRGICPSENQCLILLTNLHTSGYIQE 979



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 43/262 (16%)

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G + ++  YS L++  C++   + A ++L EM + G  C  N VTY  +I   C  G ++
Sbjct: 239 GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERG--CGLNTVTYNVLIAGLCRSGAVE 296

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           EA G    ME  G  P+  T   LI G C     +EA  L+D++       +   Y++L+
Sbjct: 297 EAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLI 356

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ----------------- 391
              +R     EA K+  +M+A+GV+P+ +    ++R LC  GQ                 
Sbjct: 357 DGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHR 416

Query: 392 --------VLEG----------FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
                   ++EG          F L  ++E  G   +V +  +S+++ GLC+     +A+
Sbjct: 417 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYT--YSIMIHGLCQSGEPEKAS 474

Query: 434 KLARFM----LKKRIWLQGPYV 451
            L   M    LK   ++  P +
Sbjct: 475 DLLEEMTTKGLKPNAFVYAPLI 496



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 102/225 (45%), Gaps = 35/225 (15%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTII--YNNVIRLFCEKGDMIAADELMK--- 188
           V+   C  A    +AM+++ +M    LR    I  +NN++  FC++G M    +L+    
Sbjct: 774 VLTTGCSSAGDLEQAMFLIEEM---FLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIM 830

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL-------- 240
           G GL+   P+ +T  ++I G   AG+L +   +F  +++    +    +S+L        
Sbjct: 831 GRGLV---PNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQG 887

Query: 241 ---LDGI-------CRLGSMERALELLGEMEKEGGD--CSPNVVTYTSVIQIFCGKGMMK 288
              LD +       C+ G++++AL L   +  +     CS    +Y +++   C KG + 
Sbjct: 888 KIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCS----SYLAIVDNLCRKGKLS 943

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           EAL +L  M+  G  P+      L+      G + E   ++D ++
Sbjct: 944 EALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQEHNTVLDNML 988



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 24/239 (10%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD   +++M    C       A GL   M R   +  +V           L S+ RAL  
Sbjct: 122 PDAFAHLAM--SLCAGSLFNLANGLLIKMIRAYPSPPVV-----------LASIHRAL-- 166

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
                 + G  SP V+    ++  +   G +++A  ++  M   G AP+    + L+K  
Sbjct: 167 -----SDSGHRSPAVLDV--LVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDL 219

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
                +   +++ + +V  G       YS+L+    + +    A+K+  +M   G   + 
Sbjct: 220 LRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNT 279

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +  +V+I  LC  G V E F   +D+E  G +   D   +  L+ GLC+   S EA  L
Sbjct: 280 VTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVP--DGFTYGALINGLCKSRRSNEAKAL 336


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 160/322 (49%), Gaps = 4/322 (1%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +G V  +     +  +  + R  ++A+   R M +F L PD +IY  ++  +C  G+M+ 
Sbjct: 252 QGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLE 311

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A ++   M       D+I Y +++ G C    L DA  LF  M   G   +   ++ L+ 
Sbjct: 312 ALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIH 371

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G C+ G+M +AL L G M +   +  P++V Y ++I  FC  G M++A  + D M +   
Sbjct: 372 GHCQDGNMTKALSLFGTMTQR--NIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKI 429

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN +T   LI  +C  G++ EA++L D ++  G   +    ++++    R+    +A++
Sbjct: 430 FPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADE 489

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
              +M+A GV PD ++ + +I        + + F     +EK G L  + +  ++V++ G
Sbjct: 490 FLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIIT--YNVVMNG 547

Query: 423 LCRKNHSVEAAKLARFMLKKRI 444
            CR+    EA  + R M++K I
Sbjct: 548 FCRQGRMQEAELVLRKMIEKGI 569



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 141/286 (49%), Gaps = 2/286 (0%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E+GCV+ V     I N   K ++  +A  +  +M E    PD   +  +I   C+ G+M 
Sbjct: 321 EQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMT 380

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  L   M   ++ PDI+ Y ++I GFC  G +E A  L+  M       N + Y  L+
Sbjct: 381 KALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILI 440

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +  C +G +  A  L   M ++G    P +VT  +VI+ +C  G   +A   L RM A G
Sbjct: 441 NAYCSVGHVSEAFRLWDVMIEKG--IKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKG 498

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
            AP+ ++ +TLI GF  E N+D+A+  I+K+   G +     Y+ ++    R  R++EAE
Sbjct: 499 VAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAE 558

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
            +  KM+  G+ PD    + +I        + E F  ++++ + GF
Sbjct: 559 LVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGF 604



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 168/334 (50%), Gaps = 13/334 (3%)

Query: 118 EAYKE---EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           E ++E    G  ++V  + ++ N LC+  +  ++    L +M    +  D + YN +I  
Sbjct: 104 EVHREVVRSGIELNVYTLNIMVNALCKDGKF-DDVKSFLSEMEGNGIYADMVTYNTLIGA 162

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C +G +  A E+M  M    L P + TY ++I G C  GR   A G+   M   G + +
Sbjct: 163 YCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPD 222

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              Y+ LL   CR  +   A E+ GEM ++G    P++V+++S+I +F     + +AL  
Sbjct: 223 TTTYNTLLVESCRRDNFSEAKEIFGEMLRQG--VVPDLVSFSSLIAVFSRNRHLDQALVY 280

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M+  G  P+ V  + L+ G+C  GN+ EA ++ D+++  G V     Y++++  L +
Sbjct: 281 FRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCK 340

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            K L +A+KLF +M+  G  PD    + +I   C  G + +   L+  + +     ++  
Sbjct: 341 EKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQ----RNIKP 396

Query: 414 DI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           DI  ++ L+ G C+     +A++L   M+ ++I+
Sbjct: 397 DIVAYNTLIDGFCKVGEMEKASELWDGMISRKIF 430



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 164/332 (49%), Gaps = 6/332 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
            +++ +  ++G   S+     I N LC+K R A  A  +L +M    L PDT  YN ++ 
Sbjct: 173 FEIMNSMADKGLKPSLFTYNAIINGLCKKGRYA-RAKGILIEMLNIGLSPDTTTYNTLLV 231

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C + +   A E+   M    + PD++++ S+I  F     L+ A   F+ MK+ G   
Sbjct: 232 ESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVP 291

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           + V Y+ L+ G CR G+M  AL++  EM ++G  C  +V+ Y +++   C + M+ +A  
Sbjct: 292 DNVIYTVLMHGYCRNGNMLEALKIRDEMLEQG--CVLDVIAYNTILNGLCKEKMLTDADK 349

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D M   G  P+  T +TLI G C +GN+ +A  L   +           Y++L+    
Sbjct: 350 LFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFC 409

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +   +++A +L+  M++  + P+ +   ++I   C  G V E F L++ + + G   ++ 
Sbjct: 410 KVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLV 469

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +   + ++ G CR   S +A +    M+ K +
Sbjct: 470 T--CNTVIKGYCRSGDSSKADEFLGRMIAKGV 499



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 127/242 (52%), Gaps = 3/242 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+   +  +A+ +   M + +++PD + YN +I  FC+ G+M  A EL  GM   
Sbjct: 369 LIHGHCQDGNMT-KALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISR 427

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            ++P+ ITY  +I  +C+ G + +A  L+ VM   G    LV  + ++ G CR G   +A
Sbjct: 428 KIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKA 487

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E LG M  +G   +P+ ++Y ++I  F  +  M +A   +++ME  G  P+ +T + ++
Sbjct: 488 DEFLGRMIAKG--VAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVM 545

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC +G + EA  ++ K++  G       Y++L+   V    L EA +   +ML  G  
Sbjct: 546 NGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFA 605

Query: 374 PD 375
           PD
Sbjct: 606 PD 607



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 138/272 (50%), Gaps = 11/272 (4%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S++ G      +E A  + + + R G   N+   + +++ +C+ G  +     L EME  
Sbjct: 88  SLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGN 147

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G     ++VTY ++I  +C +G+++EA  I++ M   G  P+  T + +I G C +G   
Sbjct: 148 G--IYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYA 205

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A  ++ +++  G       Y++L+VE  R     EA+++F +ML  GV PD ++ S +I
Sbjct: 206 RAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLI 265

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
                   + +    + D++K G +   D+ I++VL+ G CR  + +EA K+   ML+  
Sbjct: 266 AVFSRNRHLDQALVYFRDMKKFGLVP--DNVIYTVLMHGYCRNGNMLEALKIRDEMLE-- 321

Query: 444 IWLQGPYVDKIVEHLKKSG--DEELITNLPKI 473
              QG  +D I  +   +G   E+++T+  K+
Sbjct: 322 ---QGCVLDVIAYNTILNGLCKEKMLTDADKL 350



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA  +   M E  ++P  +  N VI+ +C  GD   ADE +  M    + PD I+Y ++
Sbjct: 450 SEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTL 509

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GF     ++ A      M++ G   +++ Y+ +++G CR G M+ A  +L +M ++G 
Sbjct: 510 INGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKG- 568

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             +P+  TYT++I     +  + EA    D M   G AP+ V
Sbjct: 569 -INPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDV 609


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 180/407 (44%), Gaps = 39/407 (9%)

Query: 73  QSQMGIRFFIWAALQSSYRHS------------------------------SFMYNRACE 102
           +  + ++FF WA  Q  Y H+                               F+ N +  
Sbjct: 76  RPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNVKSVFCKFRGMGFLMNVSAA 135

Query: 103 MSRIKQNPSI-----IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157
            S IK   S+     ++ V    KE G   S+     + N    +     A  VL  M  
Sbjct: 136 NSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMEN 195

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
             + PD + YN +I+ +C+ G    A E  + M L ++ PD ITY+++I+     G  + 
Sbjct: 196 GKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDL 255

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
              L+  M  +G      AYS ++ G+C+ G       +  +M ++G  C  NV  YT++
Sbjct: 256 CLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKG--CKVNVAIYTAL 313

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I      G M EA+ + +RM+  G  P+ VT   ++   C  G LDEA + ++     G 
Sbjct: 314 IDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGV 373

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
             +   YSSL+  L +  R+ EAEKLF +M+  G  PD    + +I  L   G+  E   
Sbjct: 374 AVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALA 433

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            ++ +E  G   +V +  +++++ GL R++ + EA K+   M+ K I
Sbjct: 434 FFKRMEDEGCDQTVYT--YTIMINGLFREHKNEEALKMWDMMIDKGI 478



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 128/276 (46%), Gaps = 3/276 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V E   ++GC V+V +   + +   K     EAM +  +M +  L PD + Y  V+   C
Sbjct: 294 VFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMC 353

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A E ++   +  +  + + Y S+I G   AGR+ +A  LF+ M + GC  +  
Sbjct: 354 KSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSY 413

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+AL+D + + G  + AL     ME EG  C   V TYT +I     +   +EAL + D
Sbjct: 414 CYNALIDALAKCGKTDEALAFFKRMEDEG--CDQTVYTYTIMINGLFREHKNEEALKMWD 471

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   G  P       L  G C+ G +  A +L+D++   G +     +  ++  L +  
Sbjct: 472 MMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPETA-FEDMLNVLCKAG 530

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           R+KEA KL    +  G +  G   +V+I  L   G 
Sbjct: 531 RIKEACKLADGFVDRGREIPGRVRTVLINALRKAGN 566


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 161/310 (51%), Gaps = 9/310 (2%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157
           N  C  +R+++  S++  +VE   +   V+      +I +LC+   + N A+ +  +M  
Sbjct: 150 NGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTT---IIDSLCKNGHV-NYALSLFDQMEN 205

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           + +RPD ++Y +++   C  G    AD L++GM    + PD+IT+ ++I  F   G+  D
Sbjct: 206 YGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLD 265

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  L+  M R   A N+  Y++L++G C  G ++ A ++   ME +G  C P+VV YTS+
Sbjct: 266 AEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG--CFPDVVAYTSL 323

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I  FC    + +A+ I   M   G   N +T +TLI+GF   G  + A ++   +V+ G 
Sbjct: 324 INGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGV 383

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA---SGVKPDGLACSVMIRELCLGGQVLE 394
             +   Y+ L+  L    ++K+A  +F  M      GV P+    +V++  LC  G++ +
Sbjct: 384 PPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEK 443

Query: 395 GFCLYEDIEK 404
              ++ED+ K
Sbjct: 444 ALMVFEDMRK 453



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 185/438 (42%), Gaps = 91/438 (20%)

Query: 82  IWAALQSSYRH------SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI 135
            W     +YR        S  +N A ++         +  +++  K    +  +K   V+
Sbjct: 32  FWVRAFCNYREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVV 91

Query: 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
            NLC+  ++               +  D    N ++  FC+      A   +  M  +  
Sbjct: 92  INLCDHLQIMG-------------VSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGF 138

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            PDI+T+ S+I GFC   R+E+A  +   M   G   ++V Y+ ++D +C+ G +  AL 
Sbjct: 139 EPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALS 198

Query: 256 LLGEMEKEG-------------GDCS--------------------PNVVTYTSVIQIFC 282
           L  +ME  G             G C+                    P+V+T+ ++I  F 
Sbjct: 199 LFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFV 258

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL---------IDKVV 333
            +G   +A  + + M  +  APN  T ++LI GFC+EG +DEA Q+            VV
Sbjct: 259 KEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVV 318

Query: 334 AGGSVSSGGC--------------------------YSSLVVELVRTKRLKEAEKLFSKM 367
           A  S+ +G C                          Y++L+    +  +   A+++FS M
Sbjct: 319 AYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHM 378

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCR 425
           ++ GV P+    +V++  LC  G+V +   ++ED++K   +  V  +I  ++VLL GLC 
Sbjct: 379 VSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE-MDGVAPNIWTYNVLLHGLCY 437

Query: 426 KNHSVEAAKLARFMLKKR 443
            N  +E A +    ++KR
Sbjct: 438 -NGKLEKALMVFEDMRKR 454



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 160/333 (48%), Gaps = 45/333 (13%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + D +E Y   G    V M   + N LC   R   +A  +LR M +  ++PD I +N +I
Sbjct: 199 LFDQMENY---GIRPDVVMYTSLVNGLCNSGRW-RDADSLLRGMTKRKIKPDVITFNALI 254

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
             F ++G  + A+EL   M  + + P+I TY S+I GFC  G +++A  +F +M+  GC 
Sbjct: 255 DAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCF 314

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF---------- 281
            ++VAY++L++G C+   ++ A+++  EM ++G   + N +TYT++IQ F          
Sbjct: 315 PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG--LTGNTITYTTLIQGFGQVGKPNVAQ 372

Query: 282 -------------------------CGKGMMKEALGILDRM---EALGCAPNRVTISTLI 313
                                    C  G +K+AL I + M   E  G APN  T + L+
Sbjct: 373 EVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLL 432

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G L++A  + + +           Y+ ++  + +  ++K A  LF  + + GVK
Sbjct: 433 HGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVK 492

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           P+ +  + MI  L   G   E   L+  +++ G
Sbjct: 493 PNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 110/267 (41%), Gaps = 49/267 (18%)

Query: 206 IKGFCN----------AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
           ++ FCN          + +  +A  LF  M       +++ ++ LL+ I ++   +  + 
Sbjct: 34  VRAFCNYREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVIN 93

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           L   ++  G   S ++ T   ++  FC       A   L +M  LG  P+ VT ++LI G
Sbjct: 94  LCDHLQIMG--VSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLING 151

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           FC+ GN                                  R++EA  + ++M+  G+KPD
Sbjct: 152 FCL-GN----------------------------------RMEEAMSMVNQMVEMGIKPD 176

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  + +I  LC  G V     L++ +E  G     D  +++ L+ GLC      +A  L
Sbjct: 177 VVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRP--DVVMYTSLVNGLCNSGRWRDADSL 234

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            R M K++I       + +++   K G
Sbjct: 235 LRGMTKRKIKPDVITFNALIDAFVKEG 261



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 78/159 (49%), Gaps = 5/159 (3%)

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLR---PDTI 165
           P++  +V       G   +++   V+ + LC   ++  +A+ +   M + ++    P+  
Sbjct: 368 PNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVK-KALMIFEDMQKREMDGVAPNIW 426

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            YN ++   C  G +  A  + + M   ++   IITY  +I+G C AG++++A  LF  +
Sbjct: 427 TYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSL 486

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
              G   N+V Y+ ++ G+ R G    A  L  +M+++G
Sbjct: 487 PSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 162/338 (47%), Gaps = 40/338 (11%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L+PD + Y ++I + C+ G +  A+EL   M      P    Y +MI G+ +AGR EDA 
Sbjct: 14  LKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAY 73

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L + ++  GC  ++V+++++L  + +   ++ AL L   M+K   D  PN  TY  +I 
Sbjct: 74  KLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK---DAEPNSSTYNIIID 130

Query: 280 IFCGKGMMKEALGILDRMEAL-----------------------------------GCAP 304
           + C  G ++EA  ILD ME                                     GC P
Sbjct: 131 MLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNP 190

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           + VT  +LI G   +G +DEAY+L +K++  G  ++   Y+SL+       R ++  K+F
Sbjct: 191 DCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIF 250

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            +++  G KPD    +  +  +   G+V +G  ++EDI   GFL  V S  +S+L+ GL 
Sbjct: 251 KELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRS--YSILIHGLT 308

Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +   + E + +   M ++   L     + +V+   KSG
Sbjct: 309 KAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSG 346



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 135/281 (48%), Gaps = 2/281 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  +  G +  V+   ++ +   KA  A E   +   M +     D   YN V+  FC
Sbjct: 284 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 343

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A E+++ M    + P + TY +++ G     RL++A  LF+  K  G   N+V
Sbjct: 344 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVV 403

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS+L+DG  ++G ++ A  +L EM K+G   +PNV T+ S++        + EAL    
Sbjct: 404 LYSSLIDGFGKVGRIDEAYLILEEMMKKG--LTPNVYTWNSLLDALVKAEEINEALVCFQ 461

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+ + C PN  T S LI G C     ++A+     +   G V +   Y++++  L +  
Sbjct: 462 SMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVG 521

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
            + +A  LF +  A+G  PD  + + +I  +    + +E +
Sbjct: 522 NITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAY 562



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 142/280 (50%), Gaps = 14/280 (5%)

Query: 161 RPDTIIYNNVIRLF-----CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
           +PD  + N  +         EKG MI  D  ++  G +   PD+ +Y  +I G   AG+ 
Sbjct: 259 KPDLTLLNTYMDCVFKAGEVEKGRMIFED--IRSYGFL---PDVRSYSILIHGLTKAGQA 313

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
            +   +F  MK+ G A +  AY+A++DG C+ G + +A E+L EM+++     P V TY 
Sbjct: 314 RETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC--VQPTVATYG 371

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           +++        + EA  + +  ++ G   N V  S+LI GF   G +DEAY ++++++  
Sbjct: 372 AIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK 431

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   ++SL+  LV+ + + EA   F  M      P+    S++I  LC   +  + 
Sbjct: 432 GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKA 491

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           F  ++D++K G + +V +  ++ ++ GL +  +  +A  L
Sbjct: 492 FVFWQDMQKQGLVPNVVT--YTTMISGLAKVGNITDAYSL 529



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 140/289 (48%), Gaps = 3/289 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  +E GC+ SV     I     K R  +EA+ +   M + D  P++  YN +I + C
Sbjct: 75  LLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLC 133

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G +  A  ++  M    L+P+++T   M+   C A +LE+A  +F+   + GC  + V
Sbjct: 134 LGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCV 193

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y +L+DG+ + G ++ A  L  +M   G + +P  V YTS+I+ F   G  ++   I  
Sbjct: 194 TYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANP--VVYTSLIRNFFIHGRKEDGHKIFK 251

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            +   GC P+   ++T +      G +++   + + + + G +     YS L+  L +  
Sbjct: 252 ELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAG 311

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + +E   +F  M   G   D  A + ++   C  G+V + + + E++++
Sbjct: 312 QARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE 360



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 104/213 (48%), Gaps = 2/213 (0%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +++E  KE+    +V     I +   K    +EA  +  +     +  + ++Y+++I  F
Sbjct: 353 EILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGF 412

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            + G +  A  +++ M    L P++ T+ S++     A  + +A   F+ MK   C  N 
Sbjct: 413 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNT 472

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             YS L++G+CR+    +A     +M+K+G    PNVVTYT++I      G + +A  + 
Sbjct: 473 YTYSILINGLCRVQKYNKAFVFWQDMQKQG--LVPNVVTYTTMISGLAKVGNITDAYSLF 530

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +R +A G  P+  + + LI+G        EAYQ
Sbjct: 531 ERFKANGGIPDAASFNALIEGMSNANRAMEAYQ 563



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 110/223 (49%), Gaps = 5/223 (2%)

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A   F  +K  G   + V+Y++++  +C+ G +  A EL  +ME E     P    Y ++
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAE--RSVPCAYAYNTM 59

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I  +   G  ++A  +L+R+   GC P+ V+ ++++     +  +DEA  L + V+   +
Sbjct: 60  IMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFE-VMKKDA 118

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
             +   Y+ ++  L    R++EA ++  +M  + + P+ L  ++M+  LC   ++ E + 
Sbjct: 119 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYK 178

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           ++E   + G   + D   +  L+ GL +K    EA +L   ML
Sbjct: 179 IFESASQRG--CNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML 219



 Score = 39.3 bits (90), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A++   ++ A G       Y+S++  L +  RL EAE+LF++M A    P   A + MI 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
                G+  + + L E + + G + SV S   + +L  L +K    EA  L   M K
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVS--FNSILTCLGKKRKVDEALSLFEVMKK 116


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 150/283 (53%), Gaps = 4/283 (1%)

Query: 121 KEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           KEE C   SV    +I  LCE  RL  EA  + ++M E   +P T  Y  +I+  C+ G 
Sbjct: 234 KEENCRPNSVTYSILIHGLCEAGRL-EEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGM 292

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
              A +++  M      P++ TY  +I   C  G++E+A G+F+ M +HG    ++ ++A
Sbjct: 293 TDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNA 352

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L++G C+ G +  A +LL  MEK  G+C PN+ TY  +++  C      +A  +L R+  
Sbjct: 353 LINGYCKEGWVVSAFQLLSVMEK--GNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD 410

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  P+RVT + L+ GFC EG L+ A+ + + + + G    G  +++L+  L +  RL++
Sbjct: 411 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 470

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           A  +   M+  G+  D +  + +I   C  G+  +   L+E++
Sbjct: 471 ANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENM 513



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 181/433 (41%), Gaps = 67/433 (15%)

Query: 75  QMGIRFFIWAALQSSY-----------------------RHSSFMYNRACEMSRIKQNPS 111
           ++G+RFF W   QSSY                       + +  +  + CE S   +N  
Sbjct: 61  ELGVRFFKWVCRQSSYCYDLDGRIQLLGVLVSRDLFGVAQKAVVLLIQECEDS---ENGV 117

Query: 112 I-IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           + ++  ++   E G  +S      +     K  +   A  V R+M         I Y  V
Sbjct: 118 VKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTV 177

Query: 171 IRLFCEKG-----DMIAADELMKGMGLI-------------------------------D 194
           +   C+ G     +M     L  G GL                                +
Sbjct: 178 VNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEEN 237

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             P+ +TY  +I G C AGRLE+A  L + M   GC  +   Y+ L+   C +G  ++A+
Sbjct: 238 CRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAM 297

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           ++L EM  +   C PNV TYT +I   C +G ++EA G+  +M   G  P  +T + LI 
Sbjct: 298 KMLDEMATKA--CVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALIN 355

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G+C EG +  A+QL+  +  G    +   Y+ L+  L R  +  +A  L  +++ +G+ P
Sbjct: 356 GYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLP 415

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  ++++   C  GQ+   F ++  +   G     D    + L+ GLC+     +A  
Sbjct: 416 DRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL--EPDGFTFTALIDGLCKLGRLEQANG 473

Query: 435 LARFMLKKRIWLQ 447
           +   M+KK I L 
Sbjct: 474 ILGSMVKKGISLD 486



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 167/365 (45%), Gaps = 52/365 (14%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C++ +L N A  +   M    L PD   +  +I   C+ G +  A+ ++  M    +  
Sbjct: 427 FCKEGQL-NMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISL 485

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFK---------------------------------- 223
           D +T+ ++I G C  G+ +D C LF+                                  
Sbjct: 486 DEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAML 545

Query: 224 -VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M ++G   ++V ++ L++G CR G    +L++L  M++ G  CSPNV TYT +I   C
Sbjct: 546 GKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG--CSPNVYTYTIIINGLC 603

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G ++EA  IL  M + G +PN  T + L+K     G LD A+Q++  +V  G   +  
Sbjct: 604 NNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSH 663

Query: 343 CYSSLVVELVRT------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
            YS+L+   V +      + L     L ++ L+S    +    S + R +     V    
Sbjct: 664 IYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLM----DVDHAL 719

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456
            + ++I+K G  +    D+++ L++GLC++   +EA +L + M+K  ++     +  I+E
Sbjct: 720 KIRDEIKKCGVPT---EDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLF-PDKAISSIIE 775

Query: 457 HLKKS 461
           H  K+
Sbjct: 776 HYCKT 780



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 171/353 (48%), Gaps = 11/353 (3%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLA 145
           Q S R  + +    C++    +     + +++    + CV +V    ++ + LC + ++ 
Sbjct: 274 QPSTRTYTVLIKAKCDIGMTDK----AMKMLDEMATKACVPNVHTYTILIDRLCREGKI- 328

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            EA  V RKM +  L P  I +N +I  +C++G +++A +L+  M   +  P+I TY  +
Sbjct: 329 EEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNEL 388

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           ++G C   +   A  L + +  +G   + V Y+ L+DG C+ G +  A  +   M   G 
Sbjct: 389 MEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAG- 447

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+  T+T++I   C  G +++A GIL  M   G + + VT + LI G C  G   + 
Sbjct: 448 -LEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDV 506

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L + +V    +++   ++  +  L +  +L EA  +  KM+  G+ P  +  +++I  
Sbjct: 507 CFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG 566

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            C  G+      + E +++ G   +V +  +++++ GLC  N  VE A+   F
Sbjct: 567 HCRAGETALSLKMLERMKQAGCSPNVYT--YTIIINGLC-NNGRVEEAETILF 616



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 124/274 (45%), Gaps = 6/274 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E   E  C+ +        +   K    NEA  +L KM ++ L P  + +  +I   C
Sbjct: 509 LFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHC 568

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G+   + ++++ M      P++ TY  +I G CN GR+E+A  +   M   G + N  
Sbjct: 569 RAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHF 628

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ--IFCGKGMMKEALGI 293
            Y+ L+    + G ++RA +++  M K G  C PN   Y++++   +     +   AL  
Sbjct: 629 TYAVLVKAHVKAGRLDRAFQIVSTMVKNG--CQPNSHIYSALLSGFVLSNTAIGARALSS 686

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              ++A   +      + L        ++D A ++ D++   G V +   Y+ LVV L +
Sbjct: 687 TGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCG-VPTEDLYNFLVVGLCK 745

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
             R+ EA++L   M+  G+ PD  A S +I   C
Sbjct: 746 EGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYC 778


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 161/302 (53%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC ++R++ EA  + R M    + P+   YN ++  +C+   +  A EL + M   
Sbjct: 234 LIRGLCGESRIS-EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGD 292

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+++T+  +I G C    +  A      M   G   N+  Y+ L+DG C+ G++  A
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L L  E+EK   +  P+V TY+ +I+  CG   M+EA G+L  M+  G  PN VT +TLI
Sbjct: 353 LSLHSEIEKH--EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLI 410

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C EGN+++A ++  ++   G   +   +S+L+    +  +++ A  L+++M+  G+ 
Sbjct: 411 DGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL 470

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +A + +I      G   E F L++++++ G   +V +   S L+ GLC+     +A 
Sbjct: 471 PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT--LSCLIDGLCKDGRISDAI 528

Query: 434 KL 435
           KL
Sbjct: 529 KL 530



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 155/283 (54%), Gaps = 15/283 (5%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKE---EGCVVSVKMMKVIFN-LCEK 141
           L + Y +++ M +  C+++ +K+        +E Y+E   +G + +V    ++ + LC+ 
Sbjct: 260 LPNLYTYNTMM-DGYCKIAHVKK-------ALELYQEMLGDGLLPNVVTFGILIDGLCKT 311

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
             + +   +++  M  F + P+  +YN +I  +C+ G++  A  L   +   ++ PD+ T
Sbjct: 312 DEMVSARKFLI-DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFT 370

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  +IKG C   R+E+A GL + MK+ G   N V Y+ L+DG C+ G+ME+A+E+  +M 
Sbjct: 371 YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMT 430

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           ++G    PN++T++++I  +C  G M+ A+G+   M   G  P+ V  + LI G   +GN
Sbjct: 431 EKG--IEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
             EA++L  ++   G   +    S L+  L +  R+ +A KLF
Sbjct: 489 TKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 136/253 (53%), Gaps = 2/253 (0%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A+ + ++M    L P+ + +  +I   C+  +M++A + +  M    + P+I  Y  +I
Sbjct: 281 KALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLI 340

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C AG L +A  L   +++H    ++  YS L+ G+C +  ME A  LL EM+K+G  
Sbjct: 341 DGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG-- 398

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PN VTY ++I  +C +G M++A+ +  +M   G  PN +T STLI G+C  G ++ A 
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAM 458

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L  ++V  G +     Y++L+    +    KEA +L  +M  +G+ P+    S +I  L
Sbjct: 459 GLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGL 518

Query: 387 CLGGQVLEGFCLY 399
           C  G++ +   L+
Sbjct: 519 CKDGRISDAIKLF 531



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 171/372 (45%), Gaps = 16/372 (4%)

Query: 98  NRACEMSRIKQNPSIIIDVVEA---YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           +R  ++++  Q  S II V+     Y +  C++   +++ + N   ++R+      VL +
Sbjct: 61  SRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMR-DLIQCLQN-SRRSRICCSVFNVLSR 118

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           +      P+  ++  +I  F E G     +E +     +D+ P +     ++ G    GR
Sbjct: 119 LESSKFTPN--VFGVLIIAFSEMG---LVEEALWVYYKMDVLPAMQACNMVLDGLVKKGR 173

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EKEGGDCSPNVVT 273
            +    ++  M   G + N+V Y  L+DG CR G   +A  L  EM EK+     P VV 
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKK---IFPTVVI 230

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YT +I+  CG+  + EA  +   M   G  PN  T +T++ G+C   ++ +A +L  +++
Sbjct: 231 YTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEML 290

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G + +   +  L+  L +T  +  A K    M + GV P+    + +I   C  G + 
Sbjct: 291 GDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLS 350

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
           E   L+ +IEK   L  V +  +S+L+ GLC  +   EA  L + M KK         + 
Sbjct: 351 EALSLHSEIEKHEILPDVFT--YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 454 IVEHLKKSGDEE 465
           +++   K G+ E
Sbjct: 409 LIDGYCKEGNME 420



 Score = 42.0 bits (97), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 121/329 (36%), Gaps = 55/329 (16%)

Query: 16  IKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQ 75
           I+ +K+FA   T   P    +THL+   +N      T+K  L S+   +VL         
Sbjct: 573 IRVTKLFA---TNNQPKAHLHTHLKPPKSN-----QTLKRYLQSSNTSKVL--------- 615

Query: 76  MGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI 135
           +  R  +     S    S     +AC +            +VE  +    V++     +I
Sbjct: 616 LFFRILLRKNPSSIDSFSLMFALKACTLKS---------SLVEGKQMHALVINFGFEPII 666

Query: 136 FNLCEKARLANEAMWVLRKMPEFDLRP--DTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           F       + +    V      FD  P  + I + +VI  + +      A +L + M + 
Sbjct: 667 FLQTSLISMYSATGNVADAHNMFDEIPSKNLISWTSVISAYVDNQRPNKALQLFRQMQMD 726

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           D+ PDI+T    +    + G L+    +   ++  G   +L   ++L++   + G +  A
Sbjct: 727 DVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTA 786

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM----------MKEALGILDRMEALGCA 303
                   +      PN VT+  V+      G+          MKE   +  R+   GC 
Sbjct: 787 --------RRFSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGC- 837

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
                   ++   C  G L EAY+ I K+
Sbjct: 838 --------MVDLLCRAGLLTEAYEFILKM 858


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 154/304 (50%), Gaps = 8/304 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +++ V  KM +F  +P    Y +V+ +  E+  + +A    + M  + + P + +   +I
Sbjct: 132 DSIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLI 191

Query: 207 KGFC-NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           K FC N+G ++ A  LF+ M  HGC  +   Y  L++G+CR  S+  A ELL EME +G 
Sbjct: 192 KAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKG- 250

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            CSP+VVTYTS+I   C    + EA+ +L+ M+     PN  T S+L+ GFC  G+   A
Sbjct: 251 -CSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRA 309

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             +++ ++      +   YS+L+  L    ++ EA ++F +M   G KPD      ++  
Sbjct: 310 RDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNC 369

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLS-----SVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           LC   +  E     +++   G        S+    H+ ++ GLC  N+S  A +L   +L
Sbjct: 370 LCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVL 429

Query: 441 KKRI 444
            + I
Sbjct: 430 TRGI 433



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 9/248 (3%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +L++M      P  + Y ++I   C+  ++  A  L++ M   ++ P++ TY S++
Sbjct: 238 EAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLM 297

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC  G    A  + ++M +     N+++YS LL+G+C  G +  ALE+   M+ +G  
Sbjct: 298 DGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGF- 356

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS-------TLIKGFCVE 319
             P+   Y  ++   C     +EA   LD M   G  PNR+T S        +I G C  
Sbjct: 357 -KPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTI 415

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
            N + A+QL   V+  G   +   ++SL+      K L +  ++  +M+ +G  P G   
Sbjct: 416 NNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCNKKDLPKTSRILDEMVINGCIPQGEMW 475

Query: 380 SVMIRELC 387
           S M+   C
Sbjct: 476 STMVNCFC 483



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 128/262 (48%), Gaps = 11/262 (4%)

Query: 115 DVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++++  + +GC  SV     +I  LC+   + +EAM +L  M + ++ P+   Y++++  
Sbjct: 241 ELLQEMETKGCSPSVVTYTSIIHGLCQLNNV-DEAMRLLEDMKDKNIEPNVFTYSSLMDG 299

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+ G    A ++++ M    L P++I+Y +++ G CN G++ +A  +F  MK  G   +
Sbjct: 300 FCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPD 359

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT-------SVIQIFCGKGM 286
              Y  +++ +C +   + A   L EM   G    PN +T++        VI   C    
Sbjct: 360 AGLYGKIVNCLCDVSRFQEAANFLDEMVLCG--IKPNRITWSLHVRTHNRVIHGLCTINN 417

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
              A  +   +   G +    T ++L+K FC + +L +  +++D++V  G +  G  +S+
Sbjct: 418 SNRAFQLYLSVLTRGISITVDTFNSLLKCFCNKKDLPKTSRILDEMVINGCIPQGEMWST 477

Query: 347 LVVELVRTKRLKEAEKLFSKML 368
           +V      ++  +A KL    L
Sbjct: 478 MVNCFCDERKACDAMKLLQLQL 499



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 9/250 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR-LGSMERALEL 256
           D+ T+  MI    +A +   A  L   MK       +     +L  ICR  G + + L+ 
Sbjct: 78  DLNTFSLMISKLISANQFRLAETLLDRMKEE----KIDVTEDILLSICRAYGRIHKPLDS 133

Query: 257 LGEMEK-EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           +    K +   C P   +Y SV+ I   +  +K A      M  +G  P   +++ LIK 
Sbjct: 134 IRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKA 193

Query: 316 FCVE-GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           FC   G +D+A  L   +   G       Y +L+  L R + + EA++L  +M   G  P
Sbjct: 194 FCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSP 253

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
             +  + +I  LC    V E   L ED++      +V +  +S L+ G C+  HS  A  
Sbjct: 254 SVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFT--YSSLMDGFCKTGHSSRARD 311

Query: 435 LARFMLKKRI 444
           +   M++KR+
Sbjct: 312 ILELMIQKRL 321


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 146/275 (53%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 147 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 206

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+   M  +    
Sbjct: 207 GLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQS--L 264

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P++ T +TLI G C EG+LD A++
Sbjct: 265 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE 324

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+  +KPD    +++I E C
Sbjct: 325 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFC 384

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G  L +++++ G   SV +  ++VL+ G
Sbjct: 385 KKGDVWKGSKLLKEMQRDGHAPSVVT--YNVLMNG 417



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 109/215 (50%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M    L P+ + +  +I   C+ G +  A E+ K M   
Sbjct: 204 LINGLCKESKM-DDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQ 262

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L+ A  L   M   G   +   Y+ L+DG C+ G ++ A
Sbjct: 263 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 322

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E    M +E  +   + V YT++I   C +G   +A  +L  M ++   P+  T + +I
Sbjct: 323 FEHRKRMIQE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMII 380

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G   S   Y+ L+
Sbjct: 381 NEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLM 415



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 113/240 (47%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G   DA   +++ + H           +L+ + +L    +  +L+
Sbjct: 57  DIYVFSGLITAYLESGFXRDAIECYRLTREHKLWVPFDTCRKVLEHLMKL----KYFKLV 112

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 113 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 172

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   ++A G       YS L+  L +  ++ +A +LF +ML  G+ P+
Sbjct: 173 YIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPN 232

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 233 GVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLP--DLITYNTLIYGLCKKGDLKQAHDL 290



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            V    +I  LC++ R + +A  +LR+M   DL+PDT  Y  +I  FC+KGD+    +L+
Sbjct: 338 DVAYTALISGLCQEGR-SVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLL 396

Query: 188 KGMGLIDLYPDIITYVSMIKG 208
           K M      P ++TY  ++ G
Sbjct: 397 KEMQRDGHAPSVVTYNVLMNG 417


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 145/288 (50%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC+  R+ ++A  + ++M +  + PD   Y  +I  FC+ G +  A      M  
Sbjct: 457 KVITFLCQAKRV-DKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRS 515

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P+++TY +++  +  + +L  A  +F  M    C  N + YSAL+DG+C+ G +++
Sbjct: 516 AGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQK 575

Query: 253 ALE----LLGEMEK-------EGGDC---SPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A E    L+G  +        EG D    SPNVVTY +++   C    + +A  +LD M 
Sbjct: 576 ACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAML 635

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           A GC PN++    L+ GFC  G +D A ++  ++   G + S   Y+SL+  + +  RL 
Sbjct: 636 AAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLD 695

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ S+ML     P+ +  + M+  LC  G+  +   L   +EK G
Sbjct: 696 LAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKG 743



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 156/312 (50%), Gaps = 6/312 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC KA+  ++A  +L  M      P+ I+Y+ ++  FC+ G++ +A E+   M   
Sbjct: 614 LVNGLC-KAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKC 672

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P + TY S+I      GRL+ A  +   M +  C  N+V Y+A++DG+C+ G  E+A
Sbjct: 673 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKA 732

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L LL  MEK+G  CSPNVVTYT++I      G +   L +  +M+  GCAPN VT   LI
Sbjct: 733 LNLLSLMEKKG--CSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILI 790

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C  G LD+A+ L+D++           Y + V     +KR   +  L  +M +    
Sbjct: 791 NHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGF--SKRFLASLGLLEEMESHDTA 848

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF-LSSVDSDIHSVLLLGLCRKNHSVEA 432
           P      ++I      G++     L++++ ++   L+    D+H+ L+  LC  +   EA
Sbjct: 849 PIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEA 908

Query: 433 AKLARFMLKKRI 444
             L   M ++ I
Sbjct: 909 VALYSEMRRRGI 920



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/490 (19%), Positives = 186/490 (37%), Gaps = 79/490 (16%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI 106
           E+ L   +  L  + V+ VL        ++ +RFF+WA  Q  Y+H+   Y+   E+   
Sbjct: 89  ERFLRRYREFLTDSVVVAVLGAV--RSPELCVRFFLWAERQVGYKHTGACYDALAEVLGF 146

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
           +        ++    E+   V  +++ V+   C    L  EA+  L ++ +F  RP  + 
Sbjct: 147 EDPARTAERLLREIGEDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVT 206

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL----- 221
           YN ++++    G +  A  + K M       D  T  S  +  C  GR  DA  L     
Sbjct: 207 YNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDALDLLERED 266

Query: 222 FKV------------------------MKRHGCAA---NLVAYSALLDGICRLGSMERAL 254
           FK+                        + R  C +   N+V Y  LL G  +   +    
Sbjct: 267 FKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCK 326

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP---------- 304
            ++  M  EG  C+P+   + S++  +C       A  + +RM   GC P          
Sbjct: 327 RIINMMMTEG--CNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIG 384

Query: 305 -------------------------------NRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
                                          N++  +   +  C  G  ++A+Q++ +++
Sbjct: 385 SICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMM 444

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G V     Y+ ++  L + KR+ +A  LF +M   GV PD    +++I   C  G + 
Sbjct: 445 RKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIE 504

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
           +    ++++   G   +V +  ++ LL    +     +A  +   M+    +        
Sbjct: 505 QAQSWFDEMRSAGCSPNVVT--YTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSA 562

Query: 454 IVEHLKKSGD 463
           +++ L K+G+
Sbjct: 563 LIDGLCKAGE 572



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 146/337 (43%), Gaps = 26/337 (7%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC------NAGRL 215
           P   ++N+++  +C   D   A +L   M      P  + Y   I   C      N   L
Sbjct: 339 PSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELL 398

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           + A  +++ M    C  N +  +     +C +G  E+A +++ EM ++G    P+  TYT
Sbjct: 399 DLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKG--FVPDASTYT 456

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            VI   C    + +A  +   M+ +G  P+  T + LI  FC  G +++A    D++ + 
Sbjct: 457 KVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSA 516

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   Y++L+   +++K+L +A  +F +M+     P+ +  S +I  LC  G++ + 
Sbjct: 517 GCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKA 576

Query: 396 FCLY-------EDIEKIGFLSSVDSD-------IHSVLLLGLCRKNHSVEAAKLARFMLK 441
             +Y       ++IE   +    D+D        +  L+ GLC+     +A  L   ML 
Sbjct: 577 CEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLA 636

Query: 442 KRIWLQGPYVDKIVEHLKKSGD----EELITNLPKIG 474
                     D +V+   K G+    +E+   + K G
Sbjct: 637 AGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCG 673



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 90/236 (38%), Gaps = 39/236 (16%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC+      +A+ +L  M +    P+ + Y  +I    + G + A  EL  
Sbjct: 714 VTYTAMVDGLCKTGE-TEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFM 772

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAG---------------------------------RL 215
            M      P+ +TY  +I   C AG                                 R 
Sbjct: 773 QMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRF 832

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT-- 273
             + GL + M+ H  A     Y  L+D   + G +E ALEL  EM +     S N+ +  
Sbjct: 833 LASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSS--SLNMASKD 890

Query: 274 -YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
            +TS+IQ  C    ++EA+ +   M   G  P+      L+KG       +EA QL
Sbjct: 891 MHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQL 946



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT---YVS 204
           ++ +L +M   D  P   +Y  +I  F + G +  A EL K M  +    ++ +   + S
Sbjct: 835 SLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTS 894

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I+  C + ++E+A  L+  M+R G   +L A+  L+ G+        AL+L   + +EG
Sbjct: 895 LIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQEG 954


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 221/458 (48%), Gaps = 29/458 (6%)

Query: 25  HFTTA-SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIW 83
           H+TTA S  +  ++ L   P+        +   ++S C ++++   F     M     + 
Sbjct: 90  HYTTAISLVKEMHSSLGIKPDTF-----ILNVVINSLCHLKLVAFGFSVLGTM-----LK 139

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKA 142
             L+ S    + + N  C    +K +    +++V+  ++ G    VK   V+ N LC+  
Sbjct: 140 LGLEPSVVTFTILINGLC----VKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMG 195

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           + +    W LRKM E +  P+ ++Y+ V+   C+ G +  A  L   M    + P+++TY
Sbjct: 196 KTSEAVGW-LRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTY 254

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
             +I+G CN GR ++A  L   M + G   +L + + L+D +C+ G + +A  ++G M  
Sbjct: 255 TCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMIL 314

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    P+V TY S+I  +C +  M EA  + + M + GC P+ V  ++LI G+C   N+
Sbjct: 315 VGE--VPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNI 372

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           ++A  L+D+++  G       +++L+    +  R   A++LF  M   G  P+   C+++
Sbjct: 373 NKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAII 432

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVEAAKLARFML 440
           +  LC    + E   L+  +EK    S++D +  I+S++L G+C       A +L   + 
Sbjct: 433 LDGLCKSQLLSEALSLFHAMEK----SNLDLNIVIYSIILDGMCSAGKLNTALELFSCLP 488

Query: 441 KKRIWLQGPYVDKIVEHLKKSG----DEELITNLPKIG 474
            K + +       ++    K G     E+L++N+ + G
Sbjct: 489 AKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENG 526



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 161/337 (47%), Gaps = 4/337 (1%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           ++K   + I  V E +   G      ++ V+ N     +L      VL  M +  L P  
Sbjct: 87  KMKHYTTAISLVKEMHSSLGIKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSV 146

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + +  +I   C KGD+  A EL+  +       D+ TY  +I G C  G+  +A G  + 
Sbjct: 147 VTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRK 206

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+      N+V YS ++DG+C+ G +  AL L  EM  +G    PN+VTYT +IQ  C  
Sbjct: 207 MEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKG--IKPNLVTYTCLIQGLCNF 264

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G  KEA  +LD M  +G  P+  +++ L+   C EG + +A  +I  ++  G V     Y
Sbjct: 265 GRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTY 324

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +SL+       ++ EA ++F  M++ G  PD +A + +I   C    + +   L +++ K
Sbjct: 325 NSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIK 384

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +GF   V +   + L+ G C+    + A +L   M K
Sbjct: 385 VGFTPDVVT--WTTLIGGFCQVGRPLAAKELFLNMHK 419



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 38/288 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   R   EA  +L +M +  + PD    N ++ + C++G ++ A  ++  M L+
Sbjct: 257 LIQGLCNFGRW-KEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILV 315

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ TY S+I  +C   ++++A  +F++M   GC  ++VAY++L+ G C++ ++ +A
Sbjct: 316 GEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKA 375

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG---------------------------- 285
           + LL EM K G   +P+VVT+T++I  FC  G                            
Sbjct: 376 MHLLDEMIKVG--FTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIIL 433

Query: 286 -------MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                  ++ EAL +   ME      N V  S ++ G C  G L+ A +L   + A G  
Sbjct: 434 DGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQ 493

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            +   Y+ ++    +   L +AE L S M  +G  PD    +V ++ L
Sbjct: 494 INVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGL 541



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 2/241 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA  V   M      PD + Y ++I  +C+  ++  A  L+  M  +   PD++T+ ++
Sbjct: 338 DEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTL 397

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GFC  GR   A  LF  M ++G   NL   + +LDG+C+   +  AL L   MEK   
Sbjct: 398 IGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNL 457

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           D   N+V Y+ ++   C  G +  AL +   + A G   N    + +I GF  +G LD+A
Sbjct: 458 DL--NIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKA 515

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L+  +   G +     Y+  V  LV  + +  + K  + M   G   D     ++I  
Sbjct: 516 EDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATTTEMIINY 575

Query: 386 L 386
           L
Sbjct: 576 L 576



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 4/226 (1%)

Query: 95  FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLR 153
           F YN   +   ++        V E     GC+   V    +I   C K +  N+AM +L 
Sbjct: 322 FTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWC-KIKNINKAMHLLD 380

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M +    PD + +  +I  FC+ G  +AA EL   M      P++ T   ++ G C + 
Sbjct: 381 EMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQ 440

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            L +A  LF  M++     N+V YS +LDG+C  G +  ALEL   +  +G     NV  
Sbjct: 441 LLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKG--LQINVYA 498

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           YT +I  F  +G++ +A  +L  ME  GC P+  T +  ++G   E
Sbjct: 499 YTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAE 544



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 68/141 (48%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V +++   +I +   K++L +EA+ +   M + +L  + +IY+ ++   C  G +  A
Sbjct: 421 GQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTA 480

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            EL   +    L  ++  Y  MI GF   G L+ A  L   M+ +GC  +   Y+  + G
Sbjct: 481 LELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQG 540

Query: 244 ICRLGSMERALELLGEMEKEG 264
           +     + R+++ L  M  +G
Sbjct: 541 LVAEREIARSIKYLTMMRDKG 561


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 160/323 (49%), Gaps = 7/323 (2%)

Query: 114 IDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V    KE+G V  V     +I   C++  +  +A  +  +M    + P+  IYN ++ 
Sbjct: 544 LKVFSELKEKGLVPDVFTYSSLISGFCKQGEV-EKAFELHDEMCLKGIAPNIFIYNALVD 602

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C+ GD+  A +L  GM    L PD +TY +MI G+C +  + +A  LF  M   G   
Sbjct: 603 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQP 662

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +   Y+AL+ G C+ G ME+A+ L  EM ++G       +++ ++I  +C    ++EA  
Sbjct: 663 HSFVYNALVHGCCKEGDMEKAMNLFREMLQKG---FATTLSFNTLIDGYCKSCKIQEASQ 719

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M A    P+ VT +T+I   C  G ++EA  L  ++     +     Y+SL+    
Sbjct: 720 LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYN 779

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  +  E   LF KM+A GVKPD +   ++I   C    ++E F L +++   G L+   
Sbjct: 780 KLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTK-- 837

Query: 413 SDIHSVLLLGLCRKNHSVEAAKL 435
             IH +L+  LC++    EA+KL
Sbjct: 838 GTIHDLLITALCKREDLTEASKL 860



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 163/317 (51%), Gaps = 10/317 (3%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           SV    +I   C+   +A EA  +  +MP   ++P + +YN ++   C++GDM  A  L 
Sbjct: 629 SVTYSTMIDGYCKSENVA-EAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLF 687

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M L   +   +++ ++I G+C + ++++A  LF+ M       + V Y+ ++D  C+ 
Sbjct: 688 REM-LQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKA 746

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ME A  L  EM++   +   + VTYTS++  +   G   E   + ++M A G  P+ V
Sbjct: 747 GKMEEANLLFKEMQER--NLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEV 804

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T   +I   C E NL EA++L D+VV  G ++ G  +  L+  L + + L EA KL  +M
Sbjct: 805 TYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEM 864

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G+KP   ACS ++R     G++ E   ++E ++ +G +    +      L+ L   N
Sbjct: 865 GELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTT------LIDLVNGN 918

Query: 428 HSVEAAKLARFMLKKRI 444
            +   ++ AR ++K+ +
Sbjct: 919 LNDTDSEDARNLIKQLV 935



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 165/323 (51%), Gaps = 5/323 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           + G + +  +  V+ N   KA    EA+ + R +    + PD    +  I    + G + 
Sbjct: 482 DHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQ 541

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A ++   +    L PD+ TY S+I GFC  G +E A  L   M   G A N+  Y+AL+
Sbjct: 542 EALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALV 601

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG+C+ G ++RA +L   M ++G    P+ VTY+++I  +C    + EA  +   M + G
Sbjct: 602 DGLCKSGDIQRARKLFDGMPEKG--LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 659

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+    + L+ G C EG++++A  L  +++  G  ++   +++L+    ++ +++EA 
Sbjct: 660 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEAS 718

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +LF +M+A  + PD +  + +I   C  G++ E   L++++++   +  VD+  ++ L+ 
Sbjct: 719 QLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLI--VDTVTYTSLMY 776

Query: 422 GLCRKNHSVEAAKLARFMLKKRI 444
           G  +   S E   L   M+ K +
Sbjct: 777 GYNKLGQSSEVFALFEKMVAKGV 799



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 214/498 (42%), Gaps = 47/498 (9%)

Query: 9   ILSSSVNIKNSKIF-ALHFTTASPAERFYTHLQK-----NPNNIEKTLAT--VKAKLDST 60
           +L+      N+K F ++ F+T++P        Q+       NN +  + +  + +KL+  
Sbjct: 11  LLTDQNGFTNTKFFKSIEFSTSTPTSETLNFSQQISDFLKQNNWKTIMVSSHIPSKLNPD 70

Query: 61  CVIEVLHR------------CFPSQSQMGIRFFIWA-ALQSSYRHSSFMYNRA----CEM 103
            +  VLH+             + SQSQMG+  F+ + ++ +    +S ++  A     +M
Sbjct: 71  VIRAVLHQNQVGDPKRLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGVLTQM 130

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWV------------ 151
            R   + S I+D V  +       S  +  ++ +  ++  + +EA  V            
Sbjct: 131 IRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILIS 190

Query: 152 ------LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
                 LR M E  L P+T  Y  +    C    M  A    + M    L PD     ++
Sbjct: 191 LIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSAL 250

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GF   G +++   +  VM   G   NL+ Y+ L+ G+C+ G ME+A E+L  M   G 
Sbjct: 251 IDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG- 309

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C PN  T+  +I+ +C +  M  AL +LD ME     P+ V+   +I G C   +L  A
Sbjct: 310 -CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLA 368

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L++K+   G   +   YS+L++      R++EA +L   M  SGV PD    + +I  
Sbjct: 369 NKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISC 428

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           L   G++ E      +I+  G     D+      +LG  +     EAAK    ML   + 
Sbjct: 429 LSKAGKMEEASTYLLEIQGRGL--KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLM 486

Query: 446 LQGPYVDKIVEHLKKSGD 463
              P    ++    K+G+
Sbjct: 487 PNNPLYTVLINGHFKAGN 504



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 145/296 (48%), Gaps = 4/296 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +L  M    + PD   YN +I    + G M  A   +  +    L PD +T+ + I
Sbjct: 402 EARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 461

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+   G++ +A   F  M  HG   N   Y+ L++G  + G++  AL +   +   G  
Sbjct: 462 LGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALG-- 519

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+V T ++ I      G ++EAL +   ++  G  P+  T S+LI GFC +G +++A+
Sbjct: 520 VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 579

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L D++   G   +   Y++LV  L ++  ++ A KLF  M   G++PD +  S MI   
Sbjct: 580 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 639

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           C    V E F L+ ++   G      S +++ L+ G C++    +A  L R ML+K
Sbjct: 640 CKSENVAEAFSLFHEMPSKGV--QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK 693



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 198/471 (42%), Gaps = 82/471 (17%)

Query: 82  IWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVE-----AYKEEGCVVSVKMMKVIF 136
           ++  L  SY+    M + A  +  + +N SI+I ++      +  E+G V +     +I 
Sbjct: 158 VFDILIDSYKRMG-MLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIIT 216

Query: 137 -NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
             LC   R+ NEA     +M +  L+PD    + +I  F  +GD+     +   M    +
Sbjct: 217 AGLCRAKRM-NEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGI 275

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
             ++ITY  +I G C  G++E A  + K M   GC  N   +  L++G CR  +M RALE
Sbjct: 276 PINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALE 335

Query: 256 LLGEMEKEG-------------GDC--------------------SPNVVTYTSVIQIFC 282
           LL EMEK               G C                     PNVV Y+++I  + 
Sbjct: 336 LLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYA 395

Query: 283 GKGMMKEALGILDRMEALGCA-----------------------------------PNRV 307
            +G ++EA  +LD M   G A                                   P+ V
Sbjct: 396 SEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAV 455

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T    I G+   G + EA +  D+++  G + +   Y+ L+    +   L EA  +F  +
Sbjct: 456 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHL 515

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
            A GV PD   CS  I  L   G+V E   ++ ++++ G +  V +  +S L+ G C++ 
Sbjct: 516 HALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFT--YSSLISGFCKQG 573

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD----EELITNLPKIG 474
              +A +L   M  K I       + +V+ L KSGD     +L   +P+ G
Sbjct: 574 EVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 624



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 158/356 (44%), Gaps = 35/356 (9%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L +M + +L P  + Y  +I   C   D+  A++L++ M    L P+++ Y ++I 
Sbjct: 333 ALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIM 392

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G+ + GR+E+A  L   M   G A ++  Y+A++  + + G ME A   L E++  G   
Sbjct: 393 GYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRG--L 450

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+ VT+ + I  +   G M EA    D M   G  PN    + LI G    GNL EA  
Sbjct: 451 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 510

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           +   + A G +      S+ +  L++  R++EA K+FS++   G+ PD    S +I   C
Sbjct: 511 IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFC 570

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV---------------------------------DSD 414
             G+V + F L++++   G   ++                                 DS 
Sbjct: 571 KQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSV 630

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            +S ++ G C+  +  EA  L   M  K +       + +V    K GD E   NL
Sbjct: 631 TYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNL 686


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 158/302 (52%), Gaps = 5/302 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   + + A+ V+  M +    PD   YN V+   C+ G +  A  ++  M      P
Sbjct: 296 LCQNDHVGH-ALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLP 354

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI T+ ++I   C   RLE+A  L + +   G + ++  ++ L++ +C++G    AL L 
Sbjct: 355 DITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLF 414

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM+  G  C+P+ VTY ++I   C  G + +AL +L  ME+ GC  + +T +T+I G C
Sbjct: 415 EEMKNSG--CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 472

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +  ++EA ++ D++   G   +   +++L+  L + K++ +A  L ++M++ G++P+ +
Sbjct: 473 KKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNI 532

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + ++   C  G + +   + E +   GF   VD   +  L+ GLC+   +  A K+ R
Sbjct: 533 TYNSILTHYCKQGDIKKAADILETMTANGF--EVDVVTYGTLINGLCKAGRTQVALKVLR 590

Query: 438 FM 439
            M
Sbjct: 591 GM 592



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 142/301 (47%), Gaps = 3/301 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+      +G    V    ++ N   K    + A+ +  +M      PD + YN +I  
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G +  A +L+K M         ITY ++I G C   R+E+A  +F  M   G + N
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            + ++ L+DG+C+   ++ A  L+ +M  EG    PN +TY S++  +C +G +K+A  I
Sbjct: 496 AITFNTLIDGLCKDKKIDDAFGLINQMISEG--LQPNNITYNSILTHYCKQGDIKKAADI 553

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L+ M A G   + VT  TLI G C  G    A +++  +   G   +   Y+ ++  L R
Sbjct: 554 LETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFR 613

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIGFLSSVD 412
              +++A  LF +M   G  PD L   ++ R LC  GG + E F    ++   GF+    
Sbjct: 614 RNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFS 673

Query: 413 S 413
           S
Sbjct: 674 S 674



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 158/312 (50%), Gaps = 6/312 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM-WVLRKM-PEFDLRPDTIIYNNVIRL 173
           +V   + EG  V + ++    +  E  +L ++A+  +L ++ P F ++ DT++YN+++ +
Sbjct: 96  LVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNV 155

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             E   M   + +   MG   + PD++T+ +++K  C A ++  A  + + M   G A +
Sbjct: 156 LVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPD 215

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              ++ L+ G    GS+E AL +   M + G  CS   VT   +I  +C  G +++ALG 
Sbjct: 216 ETTFTTLMQGFVEEGSIEAALRVKARMLEMG--CSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           + +  A G  P+++T +T + G C   ++  A +++D +V  G       Y+ +V  L +
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             +L+EA+ + ++M+  G  PD    + +I  LC G ++ E   L   +   G   S D 
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGV--SPDV 391

Query: 414 DIHSVLLLGLCR 425
              ++L+  LC+
Sbjct: 392 YTFNILINALCK 403



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 170/386 (44%), Gaps = 41/386 (10%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           ++E+   E     +K   V FN     LC +A     A+ +L +M    + PD   +  +
Sbjct: 164 LLESVYSEMGARGIKPDVVTFNTLMKALC-RAHQVRTAVLMLEEMSSRGVAPDETTFTTL 222

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           ++ F E+G + AA  +   M  +      +T   +I G+C  GR+EDA G  +     G 
Sbjct: 223 MQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF 282

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             + + Y+  ++G+C+   +  AL+++  M +EG D  P+V TY  V+   C  G ++EA
Sbjct: 283 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHD--PDVFTYNIVVNCLCKNGQLEEA 340

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
            GIL++M   GC P+  T +TLI   C    L+EA  L  +V   G       ++ L+  
Sbjct: 341 KGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 400

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG---- 406
           L +      A +LF +M  SG  PD +  + +I  LC  G++ +   L +D+E  G    
Sbjct: 401 LCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRS 460

Query: 407 ---FLSSVDS-----------------DIHSV---------LLLGLCRKNHSVEAAKLAR 437
              + + +D                  D+  +         L+ GLC+     +A  L  
Sbjct: 461 TITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLIN 520

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGD 463
            M+ + +       + I+ H  K GD
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGD 546


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 165/349 (47%), Gaps = 37/349 (10%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    ++  LC+  +    A  +L  M E + RP    YN +I   C++ ++  A  L+
Sbjct: 45  TVTFNSIMDGLCKAGKF-ERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLV 103

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
                    PD++TY  +  G C  GR+++A  L K M  +GC  NLV Y+ L+DG+C+ 
Sbjct: 104 DEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKA 163

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
              E+A ELL  +   G    P+VVTYT ++   C +G + +AL +++ M   GC P+ +
Sbjct: 164 SKTEKAYELLETLVSSGF--VPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVI 221

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK----- 362
           T + L++G C  G +DEA+ +  ++V+    +    Y SLV    ++ R KEA+K     
Sbjct: 222 TYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGI 281

Query: 363 ---------------------------LFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
                                      +F  M   G  P+    ++++  LC  G+V E 
Sbjct: 282 RGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEA 341

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           F   E +   G +  V S  +++++ GL + +   EA ++   M++  I
Sbjct: 342 FPFLESMHSAGCVPDVVS--YNIIIDGLFKASKPKEARQVLDQMIQAGI 388



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 149/299 (49%), Gaps = 12/299 (4%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E  + PD   YN +I   C+      A E++  M    + PD +T+ S++ G C AG+
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            E A  L  VM    C  +   Y+ L+ G+C+  +++RA  L+ E    G    P+VVTY
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGF--VPDVVTY 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + +    C +G + EA  ++  M   GC PN VT +TLI G C     ++AY+L++ +V+
Sbjct: 119 SILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVS 178

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G V     Y+ +V  L +  RL +A K+   ML  G  P  +  + ++  LC  G+V E
Sbjct: 179 SGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDE 238

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG-PYVD 452
              +++  E +    + D+  +  L+ G C+ + + EA K+          ++G PY+D
Sbjct: 239 AHHIFK--EMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD-------GIRGTPYID 288



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 151/293 (51%), Gaps = 8/293 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KA   ++A  +L +M +  + PDT+ +N+++   C+ G    A  L+  M   
Sbjct: 16  LIDGLC-KASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAER 74

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +  P   TY ++I G C    ++ A  L       G   ++V YS L DG+C+ G ++ A
Sbjct: 75  NCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEA 134

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL+ EM   G  C+PN+VTY ++I   C     ++A  +L+ + + G  P+ VT + ++
Sbjct: 135 FELVKEMSGNG--CTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIV 192

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C EG LD+A ++++ ++  G   S   Y++L+  L RT R+ EA  +F +M++    
Sbjct: 193 DGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCT 252

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
            D LA   ++   C   +  E   + + I    ++     D+++ L+ G C++
Sbjct: 253 ADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYI-----DVYNALMDGYCKE 300



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 188/408 (46%), Gaps = 43/408 (10%)

Query: 91  RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAM 149
           R S   YN        +QN      +V+ +   G V  V    ++ + LC++ R+ +EA 
Sbjct: 77  RPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRI-DEAF 135

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            ++++M      P+ + YN +I   C+      A EL++ +      PD++TY  ++ G 
Sbjct: 136 ELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGL 195

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C  GRL+ A  + + M + GC  +++ Y+AL++G+CR G ++ A  +  EM  +  DC+ 
Sbjct: 196 CKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK--DCTA 253

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILD--------------------------------RM 297
           + + Y S++  +C     KEA  ++D                                 M
Sbjct: 254 DALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDM 313

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
              GC PN  T + ++ G C  G +DEA+  ++ + + G V     Y+ ++  L +  + 
Sbjct: 314 ACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKP 373

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--I 415
           KEA ++  +M+ +G+ PD +  + ++ + C   +  +   + +++ K G    VD D   
Sbjct: 374 KEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAG----VDPDNVT 429

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG-PYVDKIVEHLKKSG 462
           ++ L+ GL + N   +A +L   ML+    +      + I++ L K G
Sbjct: 430 YNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEG 477



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 173/373 (46%), Gaps = 42/373 (11%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+  R+ + P++  D+       GCV ++K   ++ + LC+  ++ +EA   L  M    
Sbjct: 298 CKEGRLDEIPNVFEDMAC----RGCVPNIKTYNIVMDGLCKHGKV-DEAFPFLESMHSAG 352

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             PD + YN +I    +      A +++  M    + PD +TY +++  FC   R +DA 
Sbjct: 353 CVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAV 412

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           G+ K M + G   + V Y+ L+ G+ +   +  A EL+ EM + G   S    TY ++I 
Sbjct: 413 GILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSA-CTTYNTIID 471

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV------V 333
             C +G +K+AL ++D M   G   N VT +  I   C EG LDEA  L+ ++      V
Sbjct: 472 RLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEV 531

Query: 334 AGGSVSSGGC---------------------------YSSLVVELVRTKRLKEAEKLFSK 366
           +  +V  G C                           ++ L+    +TKRL EA  L   
Sbjct: 532 SYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLEL 591

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M+  G  P  +  +++I  LC   +V + + L++++   G ++S  S  ++VL+ GLC +
Sbjct: 592 MVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVS--YTVLIYGLCGQ 649

Query: 427 NHSVEAAKLARFM 439
               EA ++   M
Sbjct: 650 GRGKEALQVLEEM 662



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 178/414 (42%), Gaps = 53/414 (12%)

Query: 81  FIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140
           F+ +         S + +  C+  RI +      ++V+     GC  ++     + +   
Sbjct: 106 FVSSGFVPDVVTYSILADGLCKRGRIDE----AFELVKEMSGNGCTPNLVTYNTLIDGLC 161

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA    +A  +L  +      PD + Y  ++   C++G +  A ++++GM      P +I
Sbjct: 162 KASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVI 221

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY----------------------- 237
           TY ++++G C  GR+++A  +FK M    C A+ +AY                       
Sbjct: 222 TYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGI 281

Query: 238 ---------SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
                    +AL+DG C+ G ++    +  +M   G  C PN+ TY  V+   C  G + 
Sbjct: 282 RGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRG--CVPNIKTYNIVMDGLCKHGKVD 339

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           EA   L+ M + GC P+ V+ + +I G        EA Q++D+++  G       Y++L+
Sbjct: 340 EAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLM 399

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
            +  + +R  +A  +   M+ +GV PD +  + +I  L    ++ + + L  ++ + G +
Sbjct: 400 AQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCV 459

Query: 409 SSVDSDIHSVLLLGLCRK--------------NHSVEAAKLARFMLKKRIWLQG 448
            S     ++ ++  LC++               H VEA  +   +   R+  +G
Sbjct: 460 VSA-CTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEG 512



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 164/367 (44%), Gaps = 52/367 (14%)

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           +E+    GCV  V    +I +   KA    EA  VL +M +  + PD + YN ++  FC+
Sbjct: 345 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 404

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL-V 235
           +     A  ++K M    + PD +TY ++I G     RL DA  L   M R+GC  +   
Sbjct: 405 EERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACT 464

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ ++D +C+ G +++AL L+  M   G     N VTY   I   C +G + EA  +L 
Sbjct: 465 TYNTIIDRLCKEGCLKQALLLMDHMTGHG--VEANTVTYNIFIDRLCKEGRLDEASSLLS 522

Query: 296 RMEALGCAPNRVTISTLI----------------------KGFCVEGN------------ 321
            M+ L    + V+ +T+I                      KG C+  +            
Sbjct: 523 EMDTL---RDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKT 579

Query: 322 --LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
             LDEA  L++ +V  G   S   Y+ ++  L +  ++ +A +LF +M   G+    ++ 
Sbjct: 580 KRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSY 639

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV----LLLGLCRKNHSVEAAKL 435
           +V+I  LC  G+  E   + E+      ++S D +I  +    L L L  +    EAA+L
Sbjct: 640 TVLIYGLCGQGRGKEALQVLEE------MASSDCEIDDLKCRKLYLALRGQGRGEEAAEL 693

Query: 436 ARFMLKK 442
            R M  K
Sbjct: 694 LRRMTTK 700


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 159/298 (53%), Gaps = 12/298 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+ N   KA+   EA  +L++  E    P+ I+Y  VI  FC+ G +  A EL+  M   
Sbjct: 81  VLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKER 140

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  D++ + ++I+G C  GR+++A   FK M    C+ N++ Y+ +++G+C+   ++ A
Sbjct: 141 GVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE-CSPNVITYNTVVNGLCKANRIDEA 199

Query: 254 LELLGEMEKE---GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           LEL  +MEK       C P+V++Y++VI   C    + +A     RM A+GCAPN VT S
Sbjct: 200 LELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYS 259

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           +LI G C      E  +L+  +   G   +   +++++  L +    ++A + F ++L S
Sbjct: 260 SLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKS 319

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGF-CLYEDIEKIGFLSSVDSDI--HSVLLLGLCR 425
           G KP+ +  +V +  LC  G+V E +  L E +E     S V  D+  +S ++ G C+
Sbjct: 320 GKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVE-----SKVTPDVITYSSIIDGFCK 372



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 189/398 (47%), Gaps = 54/398 (13%)

Query: 80  FFIWAALQSSYRHSSF----MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI 135
           FF WA  +  ++H+++    + N   +  R ++   ++ + +E      C  +  M   +
Sbjct: 62  FFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPL----CFPNEIMYTTV 117

Query: 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
            N   KA   ++A  +L +M E  ++ D ++++ +I+  C KG +  A E  K MG  + 
Sbjct: 118 INGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGE-EC 176

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----HGCAANLVAYSALLDGICRLGSM 250
            P++ITY +++ G C A R+++A  LF  M++     HGC  ++++YS ++D +C+   +
Sbjct: 177 SPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRV 236

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL---------------- 294
           ++A E    M   G  C+PNVVTY+S+I   C      E L +L                
Sbjct: 237 DKAYEYFKRMRAVG--CAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFN 294

Query: 295 -------------------DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
                              +R+   G  PN VT +  + G C  G +DEAY+++ ++V  
Sbjct: 295 AMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVES 354

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
                   YSS++    +  R+ +A+ +F++M+     P  +    ++       +  E 
Sbjct: 355 KVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREA 414

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           F ++ED+   GF+  + +  ++VL+  +C  + SVE+A
Sbjct: 415 FRVHEDMVNAGFIPGLQT--YNVLMDCVCGAD-SVESA 449



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 141/290 (48%), Gaps = 8/290 (2%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           +  LC+  R+ +EA  +L +M E  + PD I Y+++I  FC+ G M  AD++   M + +
Sbjct: 332 VHGLCKAGRV-DEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHE 390

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             P  +T+++++ GF    +  +A  + + M   G    L  Y+ L+D +C   S+E AL
Sbjct: 391 CIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESAL 450

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           E+  +M+++     P+  TY  +IQ  C    + EA   LD MEA    PN      L++
Sbjct: 451 EIYHKMKRKKR--QPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVE 508

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
             C +G +DEA  ++D VV  G    G  +  LV EL   K+ + A KL   + + G   
Sbjct: 509 VLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKL---LRSPGFVA 565

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           D    S+ + E+C  G+  E   + E +   G     D   +  +L  LC
Sbjct: 566 DAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRP--DEGTYVAVLRSLC 613



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 136/272 (50%), Gaps = 10/272 (3%)

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
           +P+ I Y ++I GFC AG+++ A  L   MK  G   +++ +S L+ G+CR G ++ ALE
Sbjct: 108 FPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALE 167

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME-----ALGCAPNRVTIS 310
               M   G +CSPNV+TY +V+   C    + EAL + D ME     + GC P+ ++ S
Sbjct: 168 QFKSM---GEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYS 224

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           T+I   C    +D+AY+   ++ A G   +   YSSL+  L +  R  E  +L   M   
Sbjct: 225 TVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEK 284

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G   + +  + M+  L    +  +    +E + K G   +V +  ++V + GLC+     
Sbjct: 285 GFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVT--YNVAVHGLCKAGRVD 342

Query: 431 EAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           EA ++   M++ ++         I++   K+G
Sbjct: 343 EAYRILLEMVESKVTPDVITYSSIIDGFCKAG 374



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 14/246 (5%)

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           + G   N    + LL+   +    E A  LL E E E   C PN + YT+VI  FC  G 
Sbjct: 69  KPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKE-ELEPL-CFPNEIMYTTVINGFCKAGQ 126

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG--CY 344
           + +A  +LD M+  G   + +  STLI+G C +G +DEA   +++  + G   S     Y
Sbjct: 127 VDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEA---LEQFKSMGEECSPNVITY 183

Query: 345 SSLVVELVRTKRLKEAEKLFSKM-----LASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +++V  L +  R+ EA +LF  M      + G +PD ++ S +I  LC   +V + +  +
Sbjct: 184 NTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYF 243

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459
           + +  +G   +V +  +S L+ GLC+ +   E  +L   M +K   +     + ++  L 
Sbjct: 244 KRMRAVGCAPNVVT--YSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALW 301

Query: 460 KSGDEE 465
           K+ ++E
Sbjct: 302 KNDEQE 307



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 105/245 (42%), Gaps = 34/245 (13%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G +  ++   V+ +    A     A+ +  KM     +PD   Y  +I+  C    +  A
Sbjct: 425 GFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEA 484

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF--------------------- 222
            E +  M   ++ P+     ++++  C  G +++AC +                      
Sbjct: 485 KEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEE 544

Query: 223 -----------KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
                      K+++  G  A+   YS  +  IC+ G  + A+E++ +M  +G    P+ 
Sbjct: 545 LYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKG--VRPDE 602

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
            TY +V++  CG   ++ A+   ++M + GCAP  VT + LI   C     DEA+++ + 
Sbjct: 603 GTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEA 662

Query: 332 VVAGG 336
           +VA G
Sbjct: 663 MVAAG 667



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 6/175 (3%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++  + +EA  VL  + E   +P    +  ++     +    AA +L++  G +    
Sbjct: 510 LCKQGEV-DEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFV---A 565

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D  TY   +   C AG+ ++A  + + M   G   +   Y A+L  +C L  +E A+   
Sbjct: 566 DAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEF 625

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
            +M   G  C+P +VTYT +I   C   M  EA  I + M A G  P   T+ TL
Sbjct: 626 EKMASRG--CAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTL 678



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 11/166 (6%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN--EAMWVLRKMPEF 158
           C+   + +  S++ +VVE     GC    +  K+   L E+  L    EA   L + P F
Sbjct: 511 CKQGEVDEACSVLDNVVEV----GCQPLGETFKI---LVEELYLRKKWEAASKLLRSPGF 563

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
               D   Y+  +   C+ G    A E+++ M L  + PD  TYV++++  C   R+E A
Sbjct: 564 --VADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESA 621

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
              F+ M   GCA  LV Y+ L+   C     + A  +   M   G
Sbjct: 622 IAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAG 667


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 169/358 (47%), Gaps = 11/358 (3%)

Query: 39  LQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN 98
            ++NP  +  +  T    +   C    L   F    +M +       +Q + R +S +  
Sbjct: 14  FRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVE-----GMQCNDRTTSIILQ 68

Query: 99  RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM-PE 157
             C   R+ Q        +E    +  VVS   +  I  LC+  R+ + A  + RKM   
Sbjct: 69  GLCRCGRVAQALEHFDASLELAHAQPDVVSYTTL--INGLCKLGRV-DAAFDLFRKMVAA 125

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
              RP+   YN ++   C++  + AA  ++      D  PD++TY +++      GR+++
Sbjct: 126 GGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDE 185

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A   F  M   G    LV+++A++ G+CR   +  ALE+  EM     D  PN+VTY+ V
Sbjct: 186 ALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDR--DFHPNLVTYSVV 243

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I   C    + EA  +LDRM + GC P+ V  + L+ GF   G LD A  L+ ++V+ G 
Sbjct: 244 IDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGC 303

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           +     Y+ ++ +L +  R+ +A ++F +++A+   P+ +  S +I   C   +V EG
Sbjct: 304 IPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEG 361



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 158/366 (43%), Gaps = 77/366 (21%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG-------------- 191
           N+A+ + R+ P   L   ++ YN +IR FC   D+ AA  L++ M               
Sbjct: 8   NQALQLFRENP-CQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSII 66

Query: 192 ----------------------LIDLYPDIITYVSMIKGFCNAGRLEDACGLF-KVMKRH 228
                                 L    PD+++Y ++I G C  GR++ A  LF K++   
Sbjct: 67  LQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAG 126

Query: 229 GCAANLVAYSALLDGICR-----------------------------------LGSMERA 253
           GC  N   Y+AL+DG+C+                                   LG ++ A
Sbjct: 127 GCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEA 186

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L    +M +EG    P +V++ ++I   C    + +AL + + M      PN VT S +I
Sbjct: 187 LATFTQMTEEG--YVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVI 244

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C    LDEA QL+D++V+ G       Y+ LV+      RL  A  L  +M++ G  
Sbjct: 245 DGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCI 304

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  +V+I +LC  G+V +   ++ ++  +    S +   +S L+ G CR +   E  
Sbjct: 305 PDVVTYTVVIDKLCKVGRVDDAHEIFREL--VANKCSPNVVTYSALIGGYCRASRVDEGG 362

Query: 434 KLARFM 439
           K+ R M
Sbjct: 363 KVMREM 368



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 122 EEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           EEG V + V    +I  LC   RLA +A+ V  +M + D  P+ + Y+ VI   C+   +
Sbjct: 195 EEGYVPTLVSFNAIITGLCRARRLA-DALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQL 253

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A +L+  M      PD++ Y  ++ GF  AGRL+ A GL + M   GC  ++V Y+ +
Sbjct: 254 DEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVV 313

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +D +C++G ++ A E+  E+      CSPNVVTY+++I  +C    + E   +   M  +
Sbjct: 314 IDKLCKVGRVDDAHEIFREL--VANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREM 368

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            C PN VT +T+I G  +    +EAY +  ++   G V     Y  L
Sbjct: 369 ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL 415


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 159/333 (47%), Gaps = 40/333 (12%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC KA   + A  +L  M      P+ I+Y+ +I  FC+ G + +A E+   M      P
Sbjct: 454 LC-KAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 512

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            + TY S+I      GRL+ A  +   M +  C  N+V Y+A++DG+CR+G  E+AL+LL
Sbjct: 513 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 572

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             ME++G  CSPNVVTYT++I      G +  +L +  +M   GC+PN VT   LI   C
Sbjct: 573 SLMEEKG--CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLC 630

Query: 318 VEGNLDEAYQL---------------------------------IDKVVAGGSVSSGGCY 344
             G LD+A  L                                 ++++ + G+V     Y
Sbjct: 631 AAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVY 690

Query: 345 SSLVVELVRTKRLKEAEKLFSKML--ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
             L+    +  RL+ A +L  +M+   S VK D    + +I+ LCL  QV E F LY ++
Sbjct: 691 GMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEM 750

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            + GF+  +   +   L+ GL       EA +L
Sbjct: 751 TRRGFVPEL--SVFVCLIKGLVEVKKWDEALQL 781



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC   ++  +A  + ++M    + PD   Y  +I  FC+ G +  A  L + M  
Sbjct: 293 KVITFLCHATKV-EKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRS 351

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   P ++TY ++I  +  A ++  A  +F  M   GC  N V Y AL+DG+C+ G++ +
Sbjct: 352 VGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISK 411

Query: 253 ALE----LLGEMEKEGGD----------CSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A E    L+G  +    D           +PNVVTY +++   C    +  A  +LD M 
Sbjct: 412 AFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAML 471

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           + GC PN +    LI GFC  G +D A ++  ++   G + S   Y+SL+  + +  RL 
Sbjct: 472 SSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLD 531

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ S+ML     P+ +  + MI  LC  G+  +   L   +E+ G
Sbjct: 532 LAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 579



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 140/291 (48%), Gaps = 18/291 (6%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  +  GC  +V     + +   KA+   +A  +  +M +   RP+ + Y  ++   C
Sbjct: 345 LFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLC 404

Query: 176 EKGDMIAADELM-KGMGLID---------------LYPDIITYVSMIKGFCNAGRLEDAC 219
           + G++  A E+  K +G  D               L P+++TY +++ G C A +++ A 
Sbjct: 405 KAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAH 464

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M   GC  N + Y AL+DG C+ G ++ A E+  +M K G    P+V TYTS+I 
Sbjct: 465 ELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGY--LPSVHTYTSLID 522

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                G +  A+ +L +M    C PN VT + +I G C  G  ++A +L+  +   G   
Sbjct: 523 RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 582

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +   Y++L+  L +  ++  +  LF++M   G  P+ +   V+I  LC  G
Sbjct: 583 NVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAG 633



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 147/327 (44%), Gaps = 24/327 (7%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA L  +A W+  +M      P  + Y  +I  + +   +  A+++   M      P+ +
Sbjct: 335 KAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDV 394

Query: 201 TYVSMIKGFCNAGRLE----------------DACGLFKVMKRHGCAANLVAYSALLDGI 244
           TY +++ G C AG +                 D+   F    RH  A N+V Y AL+DG+
Sbjct: 395 TYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGL 454

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+   ++ A ELL  M   G  C PN + Y ++I  FC  G +  A  +  +M   G  P
Sbjct: 455 CKAHKVDHAHELLDAMLSSG--CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 512

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           +  T ++LI     +G LD A +++ +++      +   Y++++  L R    ++A KL 
Sbjct: 513 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 572

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           S M   G  P+ +  + +I  L   G++     L+  + + G   S +   + VL+  LC
Sbjct: 573 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG--CSPNYVTYRVLINHLC 630

Query: 425 RKNHSVEAAKLARFMLKKRIW---LQG 448
                ++ A+L    +K+  W   LQG
Sbjct: 631 AAG-LLDKARLLLGEMKQTYWPKYLQG 656



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 137/324 (42%), Gaps = 13/324 (4%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEG-CVVSVKMMKVIFNLCEKARLANEA 148
           YR S   YN   ++        +   V +   E G C+    +      LC++ R A+  
Sbjct: 36  YRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADAL 95

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             + R+    D + DT++  ++I    E      A   +  M      P+++TY +++ G
Sbjct: 96  DMIERE----DFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSG 151

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           F    +L     +  +M   GC  N   +++L+   C       A +LL  M   G  C 
Sbjct: 152 FLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG--CP 209

Query: 269 PNVVTYTSVIQIFCGK------GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
           P  V Y   I   CG+       ++  A  I   M A  C  N+V ++   +  C  G  
Sbjct: 210 PGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKF 269

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           D+A+QLI +++  G V     YS ++  L    ++++A  LF +M   GV PD    +++
Sbjct: 270 DKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTIL 329

Query: 383 IRELCLGGQVLEGFCLYEDIEKIG 406
           I   C  G + +   L+E++  +G
Sbjct: 330 IDSFCKAGLIEQAQWLFEEMRSVG 353



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 125/287 (43%), Gaps = 14/287 (4%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           + +F  RP  + YN ++++    G +     + K M       D  T        C  GR
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
             DA     +++R     + V  + ++ G+      + A+  L  M      C PNVVTY
Sbjct: 91  WADA---LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMR--CNSCIPNVVTY 145

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            +++  F  K  +     I++ M   GC PN    ++L+  +C E +   AY+L++++  
Sbjct: 146 RTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTT 205

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKE------AEKLFSKMLASGVKPDGLACSVMIRELCL 388
            G       Y+  +  +   ++L        AEK++ +MLA+    + +  +   R LC 
Sbjct: 206 CGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCG 265

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            G+  + F L +++ + GF+   D+  +S ++  LC     VE A L
Sbjct: 266 VGKFDKAFQLIKEMMRKGFVP--DTSTYSKVITFLCHAT-KVEKAFL 309



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 2/208 (0%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +E+GC  +V     + +   KA   + ++ +  +M      P+ + Y  +I   C  G +
Sbjct: 576 EEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLL 635

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L+  M        +  Y   I+GF  +     + G+ + M+ +G       Y  L
Sbjct: 636 DKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS--FIASLGILEEMESYGTVPIAPVYGML 693

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +D   + G +E A+EL  EM +       +   Y S+IQ  C    ++EA  +   M   
Sbjct: 694 IDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRR 753

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           G  P       LIKG       DEA QL
Sbjct: 754 GFVPELSVFVCLIKGLVEVKKWDEALQL 781


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 165/357 (46%), Gaps = 54/357 (15%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I  LC+  R+ +EA   L +MP   + PD + Y  VI   C+ GD+ +A  ++  M    
Sbjct: 189 IKGLCKCDRV-DEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRG 244

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             PD++TY S+I GFC  G +E A GL   M + GC  N+VAY++LL  + RLG + +A 
Sbjct: 245 CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAE 304

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI- 313
           ++L EME+ G   +P+VV+Y + I   C    +K+A  + DRM   GC PN  + S LI 
Sbjct: 305 DMLVEMERRGF--TPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIV 362

Query: 314 ---------KGFCVEGNLDEAYQLIDKV-------------------------------V 333
                     G C  G  DEA  L  KV                               +
Sbjct: 363 DILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQI 422

Query: 334 AGGSVSSGGC----YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
               +    C    ++ LV  L    RL +AE +   M+  G  PD +    ++  +C  
Sbjct: 423 HKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKC 482

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           G+      L+E+  K G +  V +  +S L+ GL  +N + EA  L   ++++R W+
Sbjct: 483 GKSAAALELFEEAVKGGCVPDVVT--YSALITGLVHENMAEEAYLLFTKLVERR-WV 536



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 163/316 (51%), Gaps = 33/316 (10%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC KA    +A+ +L +M +    P+   YN ++   CE+  +  A ++++
Sbjct: 113 VTYTNIVDGLC-KAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLE 171

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +   +PD++TY S IKG C   R+++A    K + R     ++V+Y+ +++G+C+ G
Sbjct: 172 EMAVRGYFPDVVTYNSFIKGLCKCDRVDEA---RKFLARMPVTPDVVSYTTVINGLCKSG 228

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ A  +L  M   G  C+P+VVTY+S+I  FC  G ++ A+G+LD M  LGC PN V 
Sbjct: 229 DLDSASRMLDHMSNRG--CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVA 286

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            ++L+      G++ +A  ++ ++   G       Y++ +  L + +R+K+A+ +F +M+
Sbjct: 287 YNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMV 346

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G  P+  + S++I                           VD  +++VLL GLC+   
Sbjct: 347 ERGCTPNASSYSMLI---------------------------VDILLYTVLLDGLCKGGR 379

Query: 429 SVEAAKLARFMLKKRI 444
             EA  L   +L ++I
Sbjct: 380 FDEACALFSKVLDEKI 395



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 7/245 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD  T+  +++G C + +LE A  L   MK  GC  +   Y+AL+ G  +     +A + 
Sbjct: 40  PDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 99

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EM K    C P VVTYT+++   C     ++A+ +LD M   GC+PN  T + +++G 
Sbjct: 100 LAEMVK--NHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGL 157

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C E  LDEA ++++++   G       Y+S +  L +  R+ EA K  ++M    V PD 
Sbjct: 158 CEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDV 214

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           ++ + +I  LC  G +     + + +   G   + D   +S L+ G C+      A  L 
Sbjct: 215 VSYTTVINGLCKSGDLDSASRMLDHMSNRG--CTPDVVTYSSLIDGFCKGGEVERAMGLL 272

Query: 437 RFMLK 441
             MLK
Sbjct: 273 DSMLK 277



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 12/286 (4%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC   V     + +   K      AM +L  M +   RP+ + YN+++      G +  A
Sbjct: 244 GCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKA 303

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN---------- 233
           ++++  M      PD+++Y + I G C A R++ A  +F  M   GC  N          
Sbjct: 304 EDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVD 363

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           ++ Y+ LLDG+C+ G  + A  L  ++  E   C P+V  Y  ++   C +  + +AL I
Sbjct: 364 ILLYTVLLDGLCKGGRFDEACALFSKVLDEKI-CEPDVFFYNVMLDSHCKRRQIDKALQI 422

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
             +M    C  N VT + L+ G CV+  L +A  ++  +V  G +     Y +LV  + +
Sbjct: 423 HKQMLEKNCC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCK 481

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
             +   A +LF + +  G  PD +  S +I  L       E + L+
Sbjct: 482 CGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLF 527


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 149/276 (53%), Gaps = 7/276 (2%)

Query: 134 VIFNLCEKA--RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
           ++ N C++   RLA     V   + ++ LRP  + +N ++  + + GD+     L   M 
Sbjct: 142 LMHNFCKEGEIRLAQS---VFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
              + PD+ T+  +I G C   +++DA  LF  M  +G   N V ++ L+DG C+ G ++
Sbjct: 199 ASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
            A+E+  +M  +     P+++TY ++I   C KG +K+   ++D M   G  P+++T +T
Sbjct: 259 LAMEIYRQMLSQS--LLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTT 316

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           LI G C EG+L+ A++   +++          Y++L+  L +  R  +AEK+  +ML+ G
Sbjct: 317 LIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVG 376

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +KP+    +++I E C  G V  G  L +++++ G+
Sbjct: 377 LKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGY 412



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEA 148
           Y HS  + N  C+ S++     +  ++++     G V + V    +I   C+  R+ + A
Sbjct: 207 YTHSVLI-NGLCKESKMDDANELFDEMLB----NGLVPNGVTFTTLIDGHCKNGRV-DLA 260

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
           M + R+M    L PD I YN +I   C+KGD+    +L+  M +  L PD ITY ++I G
Sbjct: 261 MEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDG 320

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C  G LE A    K M +     +  AY+AL+ G+C+ G    A ++L EM   G    
Sbjct: 321 NCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVG--LK 378

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           P + TYT +I  FC KG +     +L  M+  G  PN VT
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPNXVT 418



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 43/268 (16%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ K H           +++ + +L    +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC +G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 121 WGFYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE +                             RLK      S M ASGV+PD
Sbjct: 181 YIKIGDLDEGF-----------------------------RLK------SVMQASGVQPD 205

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
               SV+I  LC   ++ +   L++++   G +   +    + L+ G C+      A ++
Sbjct: 206 VYTHSVLINGLCKESKMDDANELFDEMLBNGLVP--NGVTFTTLIDGHCKNGRVDLAMEI 263

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            R ML + +       + ++  L K GD
Sbjct: 264 YRQMLSQSLLPDLITYNTLIYGLCKKGD 291


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 183/385 (47%), Gaps = 39/385 (10%)

Query: 88  SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
           ++Y ++  ++   CE  +++   S++ D++      GC   V    ++     K R   +
Sbjct: 166 NAYTYNPLIHT-LCERGQVRDALSVLDDMLC----RGCAPDVVTYNILLEATCKGRGYRQ 220

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM ++  M      P+ + YN ++   C +GD+  A EL++ +      P  + Y +++K
Sbjct: 221 AMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK 280

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C+A R  DA  L   M R  C  N   ++ ++  +CR G +++A++LL +M K G  C
Sbjct: 281 GLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG--C 338

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           + N+VTY ++I   C +  +  A+G+L +M++ GC P+ VT +TL+KG C      +A +
Sbjct: 339 TANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEE 398

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+D +   G +     +++L+  L +   + +A ++F +M   G  P+ +  S +I  L 
Sbjct: 399 LMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLA 458

Query: 388 LG---GQVLEGF-------------------CLYED------IEKIGFLSSVDSDIHSVL 419
                 Q LE F                   CL +D      I+ +  L       H+VL
Sbjct: 459 KATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVL 518

Query: 420 ----LLGLCRKNHSVEAAKLARFML 440
               LLGLCR   +  A  +  +M+
Sbjct: 519 YNAILLGLCRNGKTEFAIDIMAYMV 543



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 152/304 (50%), Gaps = 8/304 (2%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C   RL  +A  V+  MP   ++P+   YN +I   CE+G +  A  ++  M      PD
Sbjct: 146 CRAGRLG-DARRVVGGMP---VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPD 201

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++TY  +++  C       A  L  +M+  GC  N V Y+ L+DG+C  G ++ ALELL 
Sbjct: 202 VVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLR 261

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
            +   G  C P+ V Y +V++  C      +A  ++  M    C PN  T + +I   C 
Sbjct: 262 NLPSHG--CKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCR 319

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           +G L +A QL++K+   G  ++   Y++++  L   + +  A  L SKM + G KPD + 
Sbjct: 320 KGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVT 379

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            + +++ LC   Q ++   L +++ + G L   D+   + L+  LC+K   V+A ++ + 
Sbjct: 380 YNTLLKGLCSAAQWVDAEELMDNMTQNGCLP--DNVTFNTLIGFLCQKGLMVDAIEVFKQ 437

Query: 439 MLKK 442
           M  K
Sbjct: 438 MPDK 441



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 158/317 (49%), Gaps = 14/317 (4%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD  + N ++R  C +G     D+  + +G       ++ Y ++  G+C AGRL DA   
Sbjct: 101 PDAALANRLVRDLCRRG---RPDDAERVVGACGPAATVVAYGALTDGYCRAGRLGDA--- 154

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            +V+       N   Y+ L+  +C  G +  AL +L +M   G  C+P+VVTY  +++  
Sbjct: 155 RRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRG--CAPDVVTYNILLEAT 212

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C     ++A+ ++D M A GC PN VT + L+ G C EG++D+A +L+  + + G   S 
Sbjct: 213 CKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPST 272

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++++  L   +R  +A++L ++ML     P+    +V+I  LC  G + +   L E 
Sbjct: 273 VNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEK 332

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA----AKLARFMLKKRIWLQGPYVDKIVEH 457
           + K G  +++ +  ++ ++ GLC + +   A    +K+  +  K  I      +  +   
Sbjct: 333 MSKHGCTANIVT--YNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSA 390

Query: 458 LKKSGDEELITNLPKIG 474
            +    EEL+ N+ + G
Sbjct: 391 AQWVDAEELMDNMTQNG 407



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 153/350 (43%), Gaps = 69/350 (19%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++++  + EGC  +     V+ + +C +  + ++A+ +LR +P    +P T+ YN V++
Sbjct: 222 MELIDLMRAEGCTPNNVTYNVLMDGMCGEGDV-DDALELLRNLPSHGCKPSTVNYNTVLK 280

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C       ADEL+  M   +  P+  T+  +I   C  G L+ A  L + M +HGC A
Sbjct: 281 GLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTA 340

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG---------------------------- 264
           N+V Y+A+++G+C   +++ A+ LL +M+  G                            
Sbjct: 341 NIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELM 400

Query: 265 -----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
                  C P+ VT+ ++I   C KG+M +A+ +  +M   GC PN +T ST+I G    
Sbjct: 401 DNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKA 460

Query: 320 GNLD----------------------------------EAYQLIDKVVAGGSVSSGGCYS 345
             LD                                  EA Q + K+   G       Y+
Sbjct: 461 TKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYN 520

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           ++++ L R  + + A  + + M++SG  PD L   ++I  L   G + E 
Sbjct: 521 AILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEA 570



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 121/254 (47%), Gaps = 34/254 (13%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I ++E   + GC  ++     I N LCE+ R  + AM +L KM  +  +PD + YN +++
Sbjct: 327 IQLLEKMSKHGCTANIVTYNAIINGLCEQ-RNVDGAMGLLSKMKSYGCKPDIVTYNTLLK 385

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C     + A+ELM  M      PD +T+ ++I   C  G + DA  +FK M   GC  
Sbjct: 386 GLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTP 445

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG----------GDC--------------- 267
           N + YS ++ G+ +   +++ALEL  EM  +G           +C               
Sbjct: 446 NSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVR 505

Query: 268 -------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
                  SP+ V Y +++   C  G  + A+ I+  M + GC P+ +T   LI+G   EG
Sbjct: 506 KLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEG 565

Query: 321 NLDEAYQLIDKVVA 334
            L+EA +L+ K+ +
Sbjct: 566 YLNEARELLIKLCS 579


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 139/264 (52%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   G +     L   M    + PD+ TY  +I 
Sbjct: 158 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLIN 217

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+   M  +    
Sbjct: 218 GLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQS--L 275

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P++ T +TLI G C EG+LD A++
Sbjct: 276 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE 335

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 336 HRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFC 395

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G   SV
Sbjct: 396 KKGDVWKGSKLLKEMQRNGHAPSV 419



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 4/226 (1%)

Query: 124 GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           G +  V    V+ N LC+++++ ++A  +  +M    L P+ + +  +I   C+ G +  
Sbjct: 204 GVLPDVYTYSVLINGLCKESKM-DDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDF 262

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   +   Y+ L+D
Sbjct: 263 AMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 322

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G C+ G ++ A E    M +E  +   + V Y ++I   C +G   +A  +L  M ++G 
Sbjct: 323 GCCKEGDLDTAFEHRKRMIQE--NIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGL 380

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            P+  T + +I  FC +G++ +  +L+ ++   G   S   Y+ L+
Sbjct: 381 KPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 426



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 111/238 (46%), Gaps = 4/238 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +   G L DA   +++ + H           +L+ + +L   +      
Sbjct: 68  DIYVFSGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFY 127

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ + G   S  +  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 128 EEILECGYPAS--LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 185

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+LDE ++L   ++A G +     YS L+  L +  ++ +A +LF +ML  G+ P+G+
Sbjct: 186 RLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGV 245

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A  L
Sbjct: 246 TFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLP--DLITYNTLIYGLCKKGDLKQAHDL 301



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC++ R + +A  +LR+M    L+PDT  Y  +I  FC+KGD+    +L+K
Sbjct: 350 VAYAALISGLCQEGR-SVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLK 408

Query: 189 GMGLIDLYPDIITYVSMIKG 208
            M      P ++TY  ++ G
Sbjct: 409 EMQRNGHAPSVVTYNVLMNG 428


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 167/350 (47%), Gaps = 23/350 (6%)

Query: 78  IRFFIWAALQSSYRH--SSF--MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMM 132
           +RFF W +    ++H  S F  M NR           ++ I ++++ + EG V  V +++
Sbjct: 95  LRFFHWVSRTHFFKHDMSCFVSMLNRLVRDRLFVPADNVRILMIKSCRNEGEVKRVIQVL 154

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDL----------------RPDTIIYNNVIRLFCE 176
             I    +          +L ++ +FD+                RP+   +N +I++ C 
Sbjct: 155 SEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCN 214

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
           KG +  A+ +M  +      PD  TY S+I G C  G L+ A  +F  M + GC  N V 
Sbjct: 215 KGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVT 274

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           YSAL++G+C  G +E A+++L EM  +G    P V  YT  I   C  G   EA+ +L +
Sbjct: 275 YSALINGLCSEGRLEEAMDMLEEMIDKG--IEPTVHAYTIPIVSLCDAGRSCEAVKLLGK 332

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M+  GC PN  T + LI G   +G  + A  +  K++A G V +   YS+L+ +L    R
Sbjct: 333 MKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGR 392

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            + A  +F  ML+    P+    +V+I+  C  G + +   +++ + K G
Sbjct: 393 FETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAG 442



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 173/378 (45%), Gaps = 45/378 (11%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVL 152
           S + N  C   R+++     +D++E   ++G   +V    + I +LC+  R + EA+ +L
Sbjct: 276 SALINGLCSEGRLEE----AMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGR-SCEAVKLL 330

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
            KM +    P+   Y  +I      G    A  +   M    L P  +TY ++I      
Sbjct: 331 GKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVE 390

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           GR E A  +F+ M  H    N   Y+ ++ G C +G +++A  +  +M K G   SPNV+
Sbjct: 391 GRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGP--SPNVI 448

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEA--------------------------------- 299
           TY  +I I+  +G M  A+ +L+ M+                                  
Sbjct: 449 TYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEM 508

Query: 300 --LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
              G +PN VT + +I G+     +D+A  L  K+V  G+V S G Y+ ++    +T R+
Sbjct: 509 VEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRI 568

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
            EAE    KM+  G+ P+ +  +  I  LC  G+    F ++ +++K  +  ++ +  +S
Sbjct: 569 SEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCT--YS 626

Query: 418 VLLLGLCRKNHSVEAAKL 435
            L+ GLC++  + +A +L
Sbjct: 627 SLIDGLCQEGQAEDAERL 644



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 165/367 (44%), Gaps = 14/367 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C +  I++  +I   +++A    G   +V    +I ++  K    N AM +L  M    L
Sbjct: 423 CSIGYIQKATAIFDQMLKA----GPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGL 478

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           + DT  Y N+I  F   G +  A  L   M    + P+++TY ++I G+    +++DA  
Sbjct: 479 KLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALA 538

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M   G   +   Y+ ++ G  +   +  A    G+M K+G    PNV+TYTS I  
Sbjct: 539 LFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQG--LLPNVITYTSFIDG 596

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G    A  I   M+     PN  T S+LI G C EG  ++A +L+D     G   +
Sbjct: 597 LCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPN 652

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++LV  L    R  EA++L   M   G++P       ++   C   +V     +++
Sbjct: 653 VDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFD 712

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI-VEHLK 459
            +   GF   +    +  L+  LC+ N   +A  + + MLKK  W     V  + ++ L 
Sbjct: 713 SMVTTGFQPCLSD--YKALICALCKANFRQKAQCMFQTMLKKH-WNSDEVVWTVLLDGLL 769

Query: 460 KSGDEEL 466
           K G+ +L
Sbjct: 770 KEGETDL 776



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 138/295 (46%), Gaps = 8/295 (2%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +   M   D  P+T  YN +I+ FC  G +  A  +   M      P++ITY  +I 
Sbjct: 396 ALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIH 455

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            +   G + +A  L ++MK +G   +   Y+ L+ G  R G +E A  L  EM + G   
Sbjct: 456 IYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHG--I 513

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SPNVVTY ++I  +     + +AL +  +M   G  P+  T + +I GF     + EA  
Sbjct: 514 SPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAEN 573

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              K+V  G + +   Y+S +  L +  R   A K+F +M      P+    S +I  LC
Sbjct: 574 FCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLC 633

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             GQ  +   L +D    G   +VD+  ++ L+ GLC K    EA +L   M KK
Sbjct: 634 QEGQAEDAERLLDD----GCEPNVDT--YTTLVRGLCGKGRCYEADQLVESMKKK 682



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 205 MIKGFCNAGRLEDACG-LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           MIK   N G ++     L ++   +     L ++S LL  + +        ++  EM   
Sbjct: 137 MIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLNS 196

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G    PN+ T+ ++I+I C KG ++EA  I+  +   G  P+  T ++LI G C  GNLD
Sbjct: 197 G--IRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLD 254

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A+++ D++V  G   +   YS+L+  L    RL+EA  +  +M+  G++P   A ++ I
Sbjct: 255 LAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPI 314

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
             LC  G+  E   L   ++K G   +V +  ++ L+ GL R
Sbjct: 315 VSLCDAGRSCEAVKLLGKMKKRGCGPNVQT--YTALISGLSR 354



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 122 EEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           ++GC  +V     +   LC K R   EA  ++  M +  L+P   IY  ++   C+  ++
Sbjct: 646 DDGCEPNVDTYTTLVRGLCGKGR-CYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEV 704

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
            +A ++   M      P +  Y ++I   C A   + A  +F+ M +    ++ V ++ L
Sbjct: 705 ESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVL 764

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           LDG+ + G  + +LELL  ME    +C+ N  T
Sbjct: 765 LDGLLKEGETDLSLELLHVMESR--NCTLNFQT 795


>gi|356498649|ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial-like [Glycine max]
          Length = 1034

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 195/435 (44%), Gaps = 6/435 (1%)

Query: 39  LQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN 98
           ++ + +++E+ L  +   L+S     VL RCF    Q+ +R F W  L+  + H++  YN
Sbjct: 136 VENDSSSVEERLENLSYGLNSEVFHMVLKRCFKV-PQLALRVFNWLKLKDGFSHTTRTYN 194

Query: 99  RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
               ++R  +   ++  +VE   E G    V    +I N   KAR  +EA+     M   
Sbjct: 195 TMLHIAREAKEFGLVKKLVEEMDECGIQKDVNTWTIIINHYGKARKISEALLAFENMKRC 254

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
              PD + Y  +I   C  G    A E    M   D+  D+  Y  ++     +G +   
Sbjct: 255 GCEPDAVSYGAIICSLCSAGKRDIAMEFYNEMVRKDMVLDVRLYKMVMNCMARSGDIAAV 314

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L   M R         +  +L   C  GS+E ALEL+ E++ +  D  P    Y +++
Sbjct: 315 SLLGNDMIRLSVMPEKCVHGCMLKSFCISGSIEEALELIRELKSKDLDLEPE--NYETLV 372

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
           +  C  G + +AL I+D M+       RV    +I G+    ++D A ++   +   G V
Sbjct: 373 RGLCKAGRITDALEIVDIMKRRDMVDGRVH-GIIINGYLGRNDVDRALEVFQCMKESGCV 431

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y+ L++ L R  R +EA  L+ +ML  G+KPD +A + M+        + + + +
Sbjct: 432 PTISTYTELMLHLFRLDRYEEACMLYDEMLGKGIKPDVVAITAMVAGHVSQNHISDAWKM 491

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
           ++ +E  G   +  S   +V +  LC+ + + +  K+   M   +  +Q   +D ++  +
Sbjct: 492 FKSMECQGIKPTWKS--FAVFIKELCKASQTDDIVKVLHEMQASKSRIQDKVLDLVITWM 549

Query: 459 KKSGDEELITNLPKI 473
           K  G+  +I  + ++
Sbjct: 550 KNKGELTVIEKIQQV 564



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/428 (21%), Positives = 174/428 (40%), Gaps = 53/428 (12%)

Query: 46   IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSR 105
            I++ L     +     V+E+L  C    S + ++FF W   Q+ YRH++  YN A +++ 
Sbjct: 634  IQEKLEKSTIQFSPELVMEILQSCNMHGSSV-LKFFSWIGKQTGYRHTAESYNIAIKIA- 691

Query: 106  IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165
                              GC    K M+ +F                     F++R ++ 
Sbjct: 692  ------------------GCGKDFKHMRSLF---------------------FEMRRNSY 712

Query: 166  -----IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC--NAGRLEDA 218
                  +  +I ++   G    A    K M   D  P   TY  +I   C     +++DA
Sbjct: 713  PITSETWTIMIMVYGRTGLTEMAMNCFKEMKADDYVPSRSTYKYLIIALCGRKGRKVDDA 772

Query: 219  CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
              ++  M   G   +       L  +C +G +  A      ++  G       ++Y+  I
Sbjct: 773  LKIYGEMISAGYVPDKELIETYLGCLCEVGRVLDARRCTDSLQNFGYTVP---LSYSLFI 829

Query: 279  QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
            +  C  G ++EAL + + +       +++T  +++ G   +G L+EA   +D +   G  
Sbjct: 830  RALCRAGKVEEALALHEEVGEEKFIIDQLTFGSIVHGLLRKGRLEEALAKVDVMKQNGIT 889

Query: 339  SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
             +   ++SL+V   + K++++A + F +ML SG +P  +  S +IR     G+ ++ + +
Sbjct: 890  PTIHVFTSLIVHFFKEKQVEKAIETFEEMLHSGYEPTIVTYSALIRGYMNVGRPIDAWDI 949

Query: 399  YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
            +  ++  G     D   +S+ L  LC+   S E  +L   ML   I         +V  L
Sbjct: 950  FYRMKLKGPFP--DFKTYSMFLTCLCKVGKSEEGMRLISEMLDSGIVPSTINFRTVVYGL 1007

Query: 459  KKSGDEEL 466
             + G  +L
Sbjct: 1008 NREGKHDL 1015


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 188/460 (40%), Gaps = 76/460 (16%)

Query: 17  KNSKIFALH---FTTASPA--ERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFP 71
           K S+   LH   FTTA  A        + +  N +E  L  +   L S  V +V+     
Sbjct: 17  KQSRFRCLHANLFTTAQGAAISNEVLTVMETVNPMEDALEKLAPFLSSEIVNDVMRE--Q 74

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
            + ++G RFFIW   + S+R S   +N   +M            ++E  K     +    
Sbjct: 75  RRPELGFRFFIWTTRRRSFR-SWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPT 133

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
             V+     K+ +A +A+    KM +F  +PD   YN+++ +  +K   + A  +   M 
Sbjct: 134 FSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQML 193

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS------------- 238
            ++  P+  T+V ++ G C  G+ +DA  +F  M + G   N + Y+             
Sbjct: 194 KLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTD 253

Query: 239 ----------------------ALLDGICRLGSMERALELLGEMEKEG------------ 264
                                 ALLDG C+LG ++ A  LL   EKEG            
Sbjct: 254 DVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLI 313

Query: 265 ---------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
                                    P+VV YT +I+ FC  GM+  AL +L+ M   G +
Sbjct: 314 DGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLS 373

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+    + LIKGFC  G LD+A  L  ++       +   Y+ L+  + R   L EA ++
Sbjct: 374 PDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQI 433

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           F++M   G  P  +  + +I  LC  G++ E   L+  +E
Sbjct: 434 FNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKME 473



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 192/433 (44%), Gaps = 78/433 (18%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++ +++EG V+ +K    + +   +A+  +E     RKM +  + PD ++Y  +IR FC
Sbjct: 293 LLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFC 352

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA----------------- 218
           E G +  A  ++  M    L PD   Y ++IKGFC+ G L+ A                 
Sbjct: 353 EVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSC 412

Query: 219 ------CGL------------FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
                 CG+            F  M+  GC+ +++ ++AL+DG+C+ G +E A  L  +M
Sbjct: 413 TYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM 472

Query: 261 E-----------KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           E            +G D   +  +  ++++  C  G++ +A  +L ++   G  P+ +T 
Sbjct: 473 EIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTY 532

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           + LI GFC   N++ A++L  ++   G       Y +L+    R  R ++A ++  +M+ 
Sbjct: 533 NVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVK 592

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLY-------------------EDIEK------ 404
           +G  P       ++   C  G++   F L+                   E  EK      
Sbjct: 593 NGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELEKA 652

Query: 405 ------IGF-LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457
                 + F L++ +   +++ L+GLC+   S EA K+   + + ++ +  P    ++  
Sbjct: 653 VRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLING 712

Query: 458 LKKSGDEELITNL 470
           L K G+ E+  ++
Sbjct: 713 LCKDGNLEMAVDI 725



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            +S L+    + G  E+A+E  G+M+  G  C P+V TY S++ +   K +   AL + +
Sbjct: 133 TFSVLIAAYAKSGMAEKAVESFGKMKDFG--CKPDVFTYNSILHVMVQKEVFLLALAVYN 190

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +M  L   PNR T   L+ G C  G  D+A ++ D++   G   +   Y+ ++  L + K
Sbjct: 191 QMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAK 250

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R  +  +L + M  SG  PD + C+ ++   C  GQ+ E F L +  EK G++  +    
Sbjct: 251 RTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKG-- 308

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +S L+ GL R     E  +  R M K  I
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKMFKAGI 337



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 124/302 (41%), Gaps = 35/302 (11%)

Query: 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165
           I +NPS+ + + +         S++ M  +  LCE   L  +A  +L ++ +  + PD +
Sbjct: 474 IGKNPSLFLRLSQGADRVMDTASLQTM--VERLCESG-LILKAYKLLMQLADSGVVPDIM 530

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            YN +I  FC+  ++  A +L + + L    PD +TY ++I GF    R EDA  +   M
Sbjct: 531 TYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQM 590

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALEL-----------------LGEMEKEGGDCS 268
            ++GC  +   Y  L+   CR G +  A  L                 L E   E G+  
Sbjct: 591 VKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELE 650

Query: 269 PNV---------------VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             V                 YT  +   C     +EAL I   ++      N  +   LI
Sbjct: 651 KAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLI 710

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C +GNL+ A  +    +  G +      + L+  L+   ++K A  L ++M ++G  
Sbjct: 711 NGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQDKMKHALDLLNRMNSAGYD 770

Query: 374 PD 375
            D
Sbjct: 771 LD 772


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 150/289 (51%), Gaps = 9/289 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +LR M + + RP+ I YN +I   C+   +  A  L   M    + PDI TY S+I 
Sbjct: 274 AIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIH 333

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             CN    +    L   M       N+V +S ++D +C+ G +  A +++  M K G   
Sbjct: 334 ALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRG--V 391

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+VVTYT+++   C +  M EA+ + D M   GC PN  + + LI G+C    +D+A  
Sbjct: 392 EPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMG 451

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L++++   G ++    Y++L+  L    RL+ A  LF +M+ASG  PD +   +++  LC
Sbjct: 452 LLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLC 511

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAK 434
               + E   L + IE     S++D+DI  +++ + G+CR    +EAA+
Sbjct: 512 KNHHLAEAMVLLKAIEG----SNLDADILVYNIAIDGMCRAG-ELEAAR 555



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 170/336 (50%), Gaps = 10/336 (2%)

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           ++  + NLCE   +      +L +M    + P+ ++++ V+   C++G +  A +++  M
Sbjct: 331 LIHALCNLCEWKHVTT----LLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMM 386

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + PD++TY +++ G C    +++A  +F  M   GC  N+ +Y+ L++G C++  M
Sbjct: 387 IKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRM 446

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           ++A+ LL +M  +G     + VTY ++I   C  G ++ A+ +   M A G  P+ VT  
Sbjct: 447 DKAMGLLEQMSLQG--LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYR 504

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE-LVRTKRLKEAEKLFSKMLA 369
            L+   C   +L EA  L+ K + G ++ +     ++ ++ + R   L+ A  LFS + +
Sbjct: 505 ILLDYLCKNHHLAEAMVLL-KAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSS 563

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            G++PD    ++MI  LC  G + E   L+  +++ G   S D  I++ ++ G  R N +
Sbjct: 564 KGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENG--CSRDGCIYNTIIRGFLRSNET 621

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
             A +L + ML +           IVE L   G ++
Sbjct: 622 FGATQLLQEMLAEGFSADVSTTTLIVEMLSDDGLDQ 657



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 156/331 (47%), Gaps = 4/331 (1%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N S  I ++ +  ++ C  +V     I +   K R   EA  +  +M    + PD   YN
Sbjct: 270 NTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYN 329

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           ++I   C   +      L+  M    + P+++ + +++   C  G +  A  +  +M + 
Sbjct: 330 SLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKR 389

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   ++V Y+AL+DG C    M+ A+++   M  +G  C PNV +Y  +I  +C    M 
Sbjct: 390 GVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG--CVPNVRSYNILINGYCQIQRMD 447

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A+G+L++M   G   + VT +TLI G C  G L  A  L  ++VA G +     Y  L+
Sbjct: 448 KAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILL 507

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L +   L EA  L   +  S +  D L  ++ I  +C  G++     L+ ++   G  
Sbjct: 508 DYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQ 567

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
             V +  +++++ GLC++    EA KL R M
Sbjct: 568 PDVRT--YNIMIHGLCKRGLLDEANKLFRKM 596



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 140/283 (49%), Gaps = 15/283 (5%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V +    +GCV +V+   ++ N  C+  R+ ++AM +L +M    L  DT+ YN +I 
Sbjct: 415 VKVFDTMVHKGCVPNVRSYNILINGYCQIQRM-DKAMGLLEQMSLQGLIADTVTYNTLIH 473

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G +  A  L   M      PD++TY  ++   C    L +A  L K ++     A
Sbjct: 474 GLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDA 533

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +++ Y+  +DG+CR G +E A +L   +  +G    P+V TY  +I   C +G++ EA  
Sbjct: 534 DILVYNIAIDGMCRAGELEAARDLFSNLSSKG--LQPDVRTYNIMIHGLCKRGLLDEANK 591

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +  +M+  GC+ +    +T+I+GF        A QL+ +++A G  S+    ++L+VE++
Sbjct: 592 LFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEG-FSADVSTTTLIVEML 650

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
               L ++   F ++   GV  +        REL L G  + G
Sbjct: 651 SDDGLDQS---FERLRLRGVGEED-------RELHLRGVAVLG 683



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 131/299 (43%), Gaps = 8/299 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+    +M      P T+ +  ++    +         L   M    + PD+ T   +
Sbjct: 132 DDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNIL 191

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC+  RL  A  +   + + GC  +   ++ L+ G+C  G +  AL L  +   EG 
Sbjct: 192 INSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG- 250

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+VVTY +++   C  G    A+ +L  M    C PN +  +T+I   C +  + EA
Sbjct: 251 -FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 309

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           + L  +++  G       Y+SL+  L      K    L ++M+ S + P+ +  S ++  
Sbjct: 310 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 369

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC  G +     +  D+  +     V+ D+  ++ L+ G C ++   EA K+   M+ K
Sbjct: 370 LCKEGMI----AIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHK 424



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 108/248 (43%), Gaps = 4/248 (1%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L+DA   F  M       + V ++ LL  I ++      L L  +M+  G    P+V T 
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFG--IPPDVYTL 188

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +I  FC    +  A  +L ++  LGC P+  T +TLI+G CVEG + EA  L DK + 
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 248

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y +L+  L +      A +L   M+    +P+ +A + +I  LC   QV E
Sbjct: 249 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 308

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
            F L+ ++   G   S D   ++ L+  LC          L   M+  +I         +
Sbjct: 309 AFNLFSEMITKGI--SPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 366

Query: 455 VEHLKKSG 462
           V+ L K G
Sbjct: 367 VDALCKEG 374


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 157/321 (48%), Gaps = 4/321 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V  V +  V+F  C K    ++   +L +M    ++P+  IY   IR  C +  M  A
Sbjct: 228 GLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEA 287

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           +++ + M +  + P++ TY +MI G+C  G L  A GL+K +       N+V +  L+DG
Sbjct: 288 EKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDG 347

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+   +  A  L   M K G D  PN+  Y  +I   C  G M EA+G+L  ME+L  +
Sbjct: 348 FCKARELVAARSLFVHMVKFGVD--PNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLS 405

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+  T + LI G C E  L EA +L  ++       S   Y+SL+    +   +++A  L
Sbjct: 406 PDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDL 465

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
            S+M +SGV+P+ +  S +I   C    +     LY ++   G +  V +  ++ L+   
Sbjct: 466 CSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVT--YTTLIDAH 523

Query: 424 CRKNHSVEAAKLARFMLKKRI 444
            ++ +  EA +L   ML+  I
Sbjct: 524 FKEANMKEALRLYSDMLEAGI 544



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 18/287 (6%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KAR    A  +   M +F + P+  +YN +I   C+ G+M+ A  L+  M  ++L PD+ 
Sbjct: 350 KARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVF 409

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  +I G C   RL +A  LF+ MK      + V Y++L+ G C+  ++E+AL+L  EM
Sbjct: 410 TYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEM 469

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G +  PN++T++++I  +C    +K A+G+   M   G  P+ VT +TLI     E 
Sbjct: 470 TSSGVE--PNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEA 527

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF--SKMLASG------- 371
           N+ EA +L   ++  G   +   ++ LV    +  RL +A   +  +   A+G       
Sbjct: 528 NMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRS 587

Query: 372 -VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
             K  G  C  +I  LC  G +L     + D++  G    V  DI S
Sbjct: 588 CWKYVGFTC--LIEGLCQNGYILRASRFFSDMKSGG----VTPDIWS 628



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 116/272 (42%), Gaps = 45/272 (16%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EAM +L +M   +L PD   Y  +I   C +  +  A+ L + M    ++P  +TY S+I
Sbjct: 391 EAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLI 450

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC    +E A  L   M   G   N++ +S L+DG C++ +++ A+ L  EM  +G  
Sbjct: 451 HGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKG-- 508

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN--------------------- 305
             P+VVTYT++I     +  MKEAL +   M   G  PN                     
Sbjct: 509 IVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAI 568

Query: 306 ----------------------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
                                  V  + LI+G C  G +  A +    + +GG       
Sbjct: 569 DFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWS 628

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           Y S++   +R KR+ +   L   M+ +G+ P+
Sbjct: 629 YVSMLKAHLREKRITDTMMLHCDMIKTGILPN 660


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 141/265 (53%), Gaps = 4/265 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +   C
Sbjct: 221 GLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ---C 277

Query: 268 S-PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+++TY ++I     KG +K+A  ++D M   G  P++ T  TLI G C EG+LD A+
Sbjct: 278 LLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAF 337

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +   +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E 
Sbjct: 338 EHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEF 397

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSV 411
           C  G V +G  L +++++ G + SV
Sbjct: 398 CKKGDVWKGSKLLKEMQRDGHVPSV 422



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 109/238 (45%), Gaps = 4/238 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI     +I  +  +G L DA   +++ + H           +L+ + +L   +      
Sbjct: 71  DIYVLSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ + G   S  +  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 131 EEILECGYPAS--LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+L+E ++L   ++A G       YS L+  L +  ++ +A +LF +ML  G+ P+G+
Sbjct: 189 RLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGV 248

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +I   C  G+V     +Y+ +     L   D   ++ L+ GL +K    +A  L
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLP--DLITYNTLIYGLXKKGDLKQAHDL 304



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            V    +I  LC++ R + +A  +LR+M    L+PD   Y  +I  FC+KGD+    +L+
Sbjct: 352 DVAYTALISGLCQEGR-SVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLL 410

Query: 188 KGMGLIDLYPDIITYVSMIKG 208
           K M      P ++TY  ++ G
Sbjct: 411 KEMQRDGHVPSVVTYNVLMNG 431


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 170/338 (50%), Gaps = 10/338 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM-KGMGL 192
           ++  LC   ++ +EA  +L K+P     P+ +++N +I  +  +G +  A  +M + M  
Sbjct: 346 LMHGLCRMGKV-DEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLS 400

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   PDI TY ++I G C  G L  A  L   M+  GC  N++ Y+ L+D  C+ G +E 
Sbjct: 401 VGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEE 460

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A  +L EM  +G   + N V Y  +I   C    +++AL +   M + GC P+  T ++L
Sbjct: 461 ARNVLDEMSGKG--LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSL 518

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G C     +EA  L   ++  G +++   Y++L+   +R   ++EA KL + ML  G 
Sbjct: 519 IFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGC 578

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
             D +  + +I+ LC  G + +G  L+ED+   G   + ++   ++L+ GLCR  +   A
Sbjct: 579 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGL--NPNNISCNILINGLCRTGNIQHA 636

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            +  R M+ + +       + ++  L K+G  +   NL
Sbjct: 637 LEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNL 674



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 141/289 (48%), Gaps = 4/289 (1%)

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC  +V    ++ +  C++ RL  EA  VL +M    L  + + YN +I   C+   + 
Sbjct: 436 KGCEPNVITYTILIDRFCKEGRL-EEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQ 494

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  +   M      PDI T+ S+I G C   + E+A GL++ M   G  AN + Y+ L+
Sbjct: 495 DALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLI 554

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
               R G+M+ AL+L+ +M   G  C  + +TY  +I+  C  G +++ L + + M + G
Sbjct: 555 HAFLRRGAMQEALKLVNDMLFRG--CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKG 612

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN ++ + LI G C  GN+  A + +  ++  G       Y+SL+  L +T R +EA 
Sbjct: 613 LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEAL 672

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
            LF K+   G+ PD +  + +I   C  G   +   L       GF+ +
Sbjct: 673 NLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPN 721



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 168/343 (48%), Gaps = 7/343 (2%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
            GCV +  + + + +   K    NE + +L +M      PD   +N+ I   C+   +  
Sbjct: 264 HGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHE 323

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +L+  M L    P+  TY  ++ G C  G++++A  L   +       N+V ++ L++
Sbjct: 324 AAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN----PNVVLFNTLIN 379

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G    G ++ A  ++ E     G C P++ TY ++I   C KG +  A  +++ M+  GC
Sbjct: 380 GYVSRGRLDEAKAVMHESMLSVG-CGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGC 438

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN +T + LI  FC EG L+EA  ++D++   G   +   Y+ L+  L + +++++A  
Sbjct: 439 EPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALN 498

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           +F  M + G KPD    + +I  LC   +  E   LY+D+   G +++  +  ++ L+  
Sbjct: 499 MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTIT--YNTLIHA 556

Query: 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
             R+    EA KL   ML +   L     + +++ L ++G+ E
Sbjct: 557 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIE 599



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +IF LC+  +   EA+ + + M    +  +TI YN +I  F  +G M  A +L+  M   
Sbjct: 518 LIFGLCKVNKF-EEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFR 576

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               D ITY  +IK  C AG +E    LF+ M   G   N ++ + L++G+CR G+++ A
Sbjct: 577 GCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHA 636

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           LE L +M   G   +P++VTY S+I   C  G  +EAL + D+++  G  P+ +T +TLI
Sbjct: 637 LEFLRDMIHRG--LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 694

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              C EG  D+A+ L+ + V  G + +   +  LV   ++
Sbjct: 695 SWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIK 734



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 3/250 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  ++  +A+ +   M     +PD   +N++I   C+      A  L + M L 
Sbjct: 483 LISALCKDEKV-QDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLE 541

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  + ITY ++I  F   G +++A  L   M   GC  + + Y+ L+  +CR G++E+ 
Sbjct: 542 GVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKG 601

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L L  +M  +G   +PN ++   +I   C  G ++ AL  L  M   G  P+ VT ++LI
Sbjct: 602 LALFEDMMSKG--LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLI 659

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G   EA  L DK+   G       Y++L+    +     +A  L S+ + SG  
Sbjct: 660 NGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFI 719

Query: 374 PDGLACSVMI 383
           P+ +   +++
Sbjct: 720 PNEVTWYILV 729



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D I YN +I+  C  G++     L + M    L P+ I+   +I G C  G ++ A    
Sbjct: 581 DDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFL 640

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + M   G   ++V Y++L++G+C+ G  + AL L  +++ EG    P+ +TY ++I   C
Sbjct: 641 RDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEG--ICPDAITYNTLISWHC 698

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            +GM  +A  +L R    G  PN VT   L+  F  EG+
Sbjct: 699 KEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGD 737



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 33/269 (12%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           ++ ++K +  AG    A  L   M+  + C     +Y+ +LD +      +    +  EM
Sbjct: 167 FILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEM 226

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G   SP V T+  V++  C    +  A  +L  M   GC PN +   TLI      G
Sbjct: 227 LSKG--ISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVG 284

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            ++E  +L+++++  G +     ++  +  L +  R+ EA KL  +ML  G  P+     
Sbjct: 285 RVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYG 344

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKI----------GFLS--------------------S 410
           V++  LC  G+V E   L   +             G++S                     
Sbjct: 345 VLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCG 404

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            D   ++ L+LGLC+K + V A +L   M
Sbjct: 405 PDIFTYNTLILGLCKKGYLVSARELMNEM 433



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 7/241 (2%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  +I     AG  +    L   MK+ G       +  ++    R G   +A  LL +M 
Sbjct: 132 YYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM- 190

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           +    C P   +Y  V+ +       K    +   M + G +P   T   ++K  C+   
Sbjct: 191 RGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNE 250

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +D A  L+  +   G V +   Y +L+  L +  R+ E  KL  +ML  G  PD    + 
Sbjct: 251 VDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFND 310

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            I  LC   ++ E   L + +   GF  + +S  + VL+ GLCR     E    AR +L 
Sbjct: 311 AIHGLCKMLRIHEAAKLVDRMLLRGF--TPNSFTYGVLMHGLCRMGKVDE----ARMLLN 364

Query: 442 K 442
           K
Sbjct: 365 K 365



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 13/184 (7%)

Query: 80  FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK------ 133
           F    A+Q + +  + M  R C +  I  N  I         E+G  +   MM       
Sbjct: 557 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPN 616

Query: 134 ------VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
                 +I  LC    +   A+  LR M    L PD + YN++I   C+ G    A  L 
Sbjct: 617 NISCNILINGLCRTGNI-QHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 675

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             + +  + PD ITY ++I   C  G  +DA  L       G   N V +  L+    + 
Sbjct: 676 DKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKE 735

Query: 248 GSME 251
           G  E
Sbjct: 736 GDQE 739


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 182/403 (45%), Gaps = 43/403 (10%)

Query: 84  AALQSSYRHS----SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139
           A   + +RHS    S M +R    +  +    ++  +    KEE C ++  +   I    
Sbjct: 40  AEYTNGFRHSHQTFSLMISRLVSANHFRLAEELLCRM----KEEKCNITEDIFLSICRAY 95

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
            +     +A+ V RKM E++  P    Y  V  +   +  +  A    + M  + + P +
Sbjct: 96  GRVHKPLDAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSV 155

Query: 200 ITYVSMIKGFC-NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            +   +IK  C N+G ++ A  +F+ M   GC  +   Y  L+ G+CRLG +  A EL  
Sbjct: 156 ASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFK 215

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EME +   CSP VVTY S+I   C    +  A+ +L+ M + G  PN  T S+L+ G C 
Sbjct: 216 EMETKA--CSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCK 273

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G    A +L+D +V+   + +   YS+LV  L +  +L+EA ++  +M   G++PD   
Sbjct: 274 SGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDA-- 331

Query: 379 CSVMIRELCLGGQVLEGFCLYEDI----EKIGFLS--------------SVDSDIHSVLL 420
                    L G+++ GFC   DI    E   FL               S+   IH++++
Sbjct: 332 --------GLYGKIISGFC---DICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVV 380

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            GLC + H   A +L   M  + I +     D +V +    GD
Sbjct: 381 QGLCTE-HPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGD 422



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 121 KEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           +E G   SV  + V+   LC+ +   + A+ + R+MP     P +  Y  +I   C  G 
Sbjct: 147 REMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGK 206

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           +  A EL K M      P ++TY S+I G C +  L+ A  L + M   G   N+  YS+
Sbjct: 207 IGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSS 266

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+DG C+ G   RALELL  M        PN++TY++++   C +G ++EA+ ILDRM+ 
Sbjct: 267 LMDGHCKSGCSSRALELLDMMVSRRH--LPNMITYSTLVHGLCKEGKLQEAVEILDRMKL 324

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS------SLVVELVR 353
            G  P+      +I GFC      EA   +D++V GG   +   +S      ++VV+ + 
Sbjct: 325 QGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLC 384

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           T+    A +L+  M   G+  D      ++   C  G + +   L +++
Sbjct: 385 TEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEM 433



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 102/248 (41%), Gaps = 44/248 (17%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+   L + A+ +L +M    ++P+   Y++++   C+ G    A EL+ 
Sbjct: 227 VTYXSLIHGLCQSKDL-DSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLD 285

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P++ITY +++ G C  G+L++A  +   MK  G   +   Y  ++ G C + 
Sbjct: 286 MMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDIC 345

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYT--------------------------------- 275
               A   L EM    G  SPN +T++                                 
Sbjct: 346 KFHEAANFLDEMVL--GGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGI 403

Query: 276 --------SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
                   S++  FC KG + +A  ++D M   GC P+  T + ++  F     + E+ +
Sbjct: 404 SIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEXTWNAVVCAFWDRRKVRESAE 463

Query: 328 LIDKVVAG 335
           L+   + G
Sbjct: 464 LVQVELMG 471


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 180/353 (50%), Gaps = 16/353 (4%)

Query: 60  TCVIEVLHRCFPSQSQMGI-RFFIWAALQSSYRHSSFMY----NRACEMSRIKQNPSIII 114
           TC   +L  CF   SQ  +   F+   ++  +    F +    N  C  +RI++  S++ 
Sbjct: 108 TC--NLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVN 165

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
            +VE   +   V+      +I +LC+   + N A+ +  +M  + +RPD ++Y +++   
Sbjct: 166 QMVEMGIKPDVVIYTT---IIDSLCKNGHVDN-ALSLFNQMENYGIRPDVVMYTSLVNGL 221

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C  G    AD L++GM    + PD+IT+ ++I  F   G+L DA  L+  M +   A N+
Sbjct: 222 CNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNI 281

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             Y++L++G+C  G ++ A ++   ME +G  C P+VV YTS+I  FC    +++A+ I 
Sbjct: 282 FTYTSLINGLCMEGRLDEARQMFYLMETKG--CFPDVVAYTSLINGFCKCKKVEDAMKIF 339

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             M   G   N +T +TLI+GF + G  + A ++   +V+ G   +   Y+ L+  L   
Sbjct: 340 YEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYN 399

Query: 355 KRLKEAEKLFSKMLA---SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
            ++ +A  +F  M      GV P+    +V++  LC  G++ +   ++ D++K
Sbjct: 400 GKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQK 452



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 160/305 (52%), Gaps = 8/305 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R   +A  +LR M +  ++PD I +N +I  F ++G ++ A EL   M  + + P
Sbjct: 221 LCNSGRW-RDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAP 279

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +I TY S+I G C  GRL++A  +F +M+  GC  ++VAY++L++G C+   +E A+++ 
Sbjct: 280 NIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIF 339

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM ++G   + N +TYT++IQ F   G    A  +   M + G  PN  T + L+   C
Sbjct: 340 YEMSQKG--LTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLC 397

Query: 318 VEGNLDEA---YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
             G +++A   ++ + K    G   +   Y+ L+  L    +L++A  +F  M    +  
Sbjct: 398 YNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDI 457

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
             +  +++I+ +C  G+V +   L+  +   G   +V +  ++ ++ GL R+   +EA  
Sbjct: 458 GIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVT--YTTMISGLFREGLMLEAHV 515

Query: 435 LARFM 439
           L R M
Sbjct: 516 LFRKM 520



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/444 (23%), Positives = 187/444 (42%), Gaps = 93/444 (20%)

Query: 76  MGIRFFIWAALQSSYRH------SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV 129
           +G+ F  W     +YR        S  +N A ++         +  +++  +    +  +
Sbjct: 27  LGLSF--WVRAFCNYREILRNGLHSLQFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKM 84

Query: 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           K   V+ NLC+  ++               +  D    N ++  FC+      A   +  
Sbjct: 85  KKFDVVINLCKHLQIMG-------------VSNDLYTCNLLMNCFCQSSQPCLASSFLGK 131

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           +  +   PDI T+ S+I GFC   R+E+A  +   M   G   ++V Y+ ++D +C+ G 
Sbjct: 132 LMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGH 191

Query: 250 MERALELLGEMEKEG-------------GDCS--------------------PNVVTYTS 276
           ++ AL L  +ME  G             G C+                    P+V+T+ +
Sbjct: 192 VDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNA 251

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL-------- 328
           +I  F  +G + +A  + + M  +  APN  T ++LI G C+EG LDEA Q+        
Sbjct: 252 LIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKG 311

Query: 329 -IDKVVAGGSVSSGGC--------------------------YSSLVVELVRTKRLKEAE 361
               VVA  S+ +G C                          Y++L+       +   A+
Sbjct: 312 CFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQ 371

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVL 419
           ++F  M++ GV P+    +V++  LC  G+V +   ++ED++K   +  V  +I  ++VL
Sbjct: 372 EVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKRE-IDGVPPNIRTYNVL 430

Query: 420 LLGLCRKNHSVEAAKLARFMLKKR 443
           L GLC  N  +E A +    ++KR
Sbjct: 431 LHGLCY-NGKLEKALMVFGDMQKR 453



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 110/264 (41%), Gaps = 40/264 (15%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A  +  +M +  + P+   Y ++I   C +G +  A ++   M     +PD++ Y S+I
Sbjct: 264 DAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLI 323

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC   ++EDA  +F  M + G   N + Y+ L+ G   +G    A E+ G M   G  
Sbjct: 324 NGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRG-- 381

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCAPNRVTISTL----------- 312
             PN+ TY  ++   C  G + +AL I + M   E  G  PN  T + L           
Sbjct: 382 VPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLE 441

Query: 313 ------------------------IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
                                   I+G C  G + +A  L   + + G   +   Y++++
Sbjct: 442 KALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMI 501

Query: 349 VELVRTKRLKEAEKLFSKMLASGV 372
             L R   + EA  LF KM   GV
Sbjct: 502 SGLFREGLMLEAHVLFRKMKEDGV 525



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 5/219 (2%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           + +GC   V     + N   K +   +AM +  +M +  L  +TI Y  +I+ F   G  
Sbjct: 308 ETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKP 367

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH---GCAANLVAY 237
             A E+   M    + P+I TY  ++   C  G++  A  +F+ M++    G   N+  Y
Sbjct: 368 NVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTY 427

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + LL G+C  G +E+AL + G+M+K   D    ++TYT +IQ  C  G +K+AL +   +
Sbjct: 428 NVLLHGLCYNGKLEKALMVFGDMQKR--DMDIGIITYTIIIQGMCKAGKVKDALNLFCSL 485

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
            + G  PN VT +T+I G   EG + EA+ L  K+   G
Sbjct: 486 PSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDG 524



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 49/267 (18%)

Query: 206 IKGFCN----------AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
           ++ FCN          + +  +A  LF  M       +++ ++ LL+ I ++   +  + 
Sbjct: 33  VRAFCNYREILRNGLHSLQFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVIN 92

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           L   ++  G   S ++ T   ++  FC       A   L ++  LG  P+  T ++LI G
Sbjct: 93  LCKHLQIMG--VSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLING 150

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           FC+ GN                                  R++EA  + ++M+  G+KPD
Sbjct: 151 FCL-GN----------------------------------RIEEAMSMVNQMVEMGIKPD 175

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  + +I  LC  G V     L+  +E  G     D  +++ L+ GLC      +A  L
Sbjct: 176 VVIYTTIIDSLCKNGHVDNALSLFNQMENYGI--RPDVVMYTSLVNGLCNSGRWRDADLL 233

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            R M+K++I       + +++   K G
Sbjct: 234 LRGMMKRKIKPDVITFNALIDAFVKEG 260



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 5/159 (3%)

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMP--EFDLRPDTI- 165
           P++  +V       G   +++   V+ + LC   ++ N+A+ +   M   E D  P  I 
Sbjct: 367 PNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKV-NKALMIFEDMQKREIDGVPPNIR 425

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            YN ++   C  G +  A  +   M   D+   IITY  +I+G C AG+++DA  LF  +
Sbjct: 426 TYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSL 485

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
              G   N+V Y+ ++ G+ R G M  A  L  +M+++G
Sbjct: 486 PSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDG 524


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 181/349 (51%), Gaps = 10/349 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I V      +G   +VK    + +   KA    ++ WV   M +  + PD  +++  I  
Sbjct: 197 IGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINA 255

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+ G +  A +L   M  + + P+++TY ++I G C  G L++A    + M + G  A 
Sbjct: 256 FCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNAT 315

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           L+ YS L++G+ +L     A  +L E  ++G   +PN V Y ++I  +C  G + +AL I
Sbjct: 316 LITYSVLINGLMKLEKFNEANSVLKETLEKG--FTPNEVVYNTLIDGYCKMGNLGDALRI 373

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M + G  PN VT++++I+GFC  G +++A  +++++++ G   + G +++++  L  
Sbjct: 374 RGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCM 433

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             R + A +   +ML   ++P+    + ++  LC  G+  +   L+  + + GF +++ +
Sbjct: 434 NSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVT 493

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              + L+ GLC+  +  EA +L + ML++     G  +DKI  +   SG
Sbjct: 494 T--NALIHGLCKTGNMQEAVRLLKKMLER-----GFVLDKITYNTLISG 535



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 105/190 (55%), Gaps = 2/190 (1%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           +L  ++++YN +IR +C  G+ + A +L   M    + P   TY S+I G CN GR+EDA
Sbjct: 626 NLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA 685

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L   M++ G   N+V Y+AL+ G C+LG M++ + +L EM     D  PN +TYT +I
Sbjct: 686 KCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSY--DIHPNKITYTVMI 743

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             +   G MK A  +L  M   G  P+ VT + L  GFC EG ++E +++ D +   G  
Sbjct: 744 DGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLP 803

Query: 339 SSGGCYSSLV 348
                Y++LV
Sbjct: 804 LDEITYTTLV 813



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 141/301 (46%), Gaps = 4/301 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G V+       + + C K     E   +  +M +  + PDT  YN +I   C  G + 
Sbjct: 519 ERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLD 578

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  L       DL P++ TY  MI G+C A ++E+   LF  +       N V Y+ L+
Sbjct: 579 EAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLI 638

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
              CR G+   A +L  +M  +G    P   TY+S+I   C  G M++A  ++D M   G
Sbjct: 639 RAYCRNGNTVEAFKLHDDMRSKG--IPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEG 696

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN V  + LI G+C  G +D+   ++ ++ +     +   Y+ ++    ++  +K A 
Sbjct: 697 LLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAA 756

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           KL  +M+  G+ PD +  +V+    C  G++ EGF + + + + G    +D   ++ L+ 
Sbjct: 757 KLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGL--PLDEITYTTLVH 814

Query: 422 G 422
           G
Sbjct: 815 G 815



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 148/299 (49%), Gaps = 9/299 (3%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPE--FDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           SV +  +I   C+  ++  +A  +L +M    F + P    +  +I   C      +A  
Sbjct: 386 SVTLNSIIQGFCKIGQM-EQAECILEEMLSRGFSINPGA--FTTIIHWLCMNSRFESALR 442

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
            ++ M L ++ P+     +++ G C  G+  DA  L+  +   G  ANLV  +AL+ G+C
Sbjct: 443 FLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLC 502

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G+M+ A+ LL +M + G     + +TY ++I   C +G ++E   +   M   G  P+
Sbjct: 503 KTGNMQEAVRLLKKMLERG--FVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPD 560

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
             T + LI G C  G LDEA  L ++  +   V +   Y  ++    +  +++E EKLF+
Sbjct: 561 TFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFT 620

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           ++L   ++ + +  + +IR  C  G  +E F L++D+   G   +  +  +S L+ G+C
Sbjct: 621 ELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTAT--YSSLIHGMC 677



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 155/335 (46%), Gaps = 15/335 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM-----K 188
           +I  LC  +R  + A+  LR+M   ++RP+  +   ++   C++G    A EL      K
Sbjct: 427 IIHWLCMNSRFES-ALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEK 485

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
           G G      +++T  ++I G C  G +++A  L K M   G   + + Y+ L+ G C+ G
Sbjct: 486 GFG-----ANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEG 540

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E   +L GEM K+G    P+  TY  +I   C  G + EA+ + +  ++    PN  T
Sbjct: 541 KVEEGFKLRGEMVKQG--IEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYT 598

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
              +I G+C    ++E  +L  +++      +   Y++L+    R     EA KL   M 
Sbjct: 599 YGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR 658

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           + G+ P     S +I  +C  G++ +  CL +++ K G L +V    ++ L+ G C+   
Sbjct: 659 SKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVC--YTALIGGYCKLGQ 716

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             +   + + M    I         +++   KSGD
Sbjct: 717 MDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGD 751



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 144/311 (46%), Gaps = 15/311 (4%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK------------ 133
           +Q + R    M  R   + +I  N  I     E   EEG  +  +M+K            
Sbjct: 507 MQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNL 566

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  +C   +L +EA+ +  +    DL P+   Y  +I  +C+   +   ++L   +   
Sbjct: 567 LIHGMCRIGKL-DEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ 625

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +L  + + Y ++I+ +C  G   +A  L   M+  G       YS+L+ G+C +G ME A
Sbjct: 626 NLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA 685

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L+ EM KEG    PNVV YT++I  +C  G M + + +L  M +    PN++T + +I
Sbjct: 686 KCLIDEMRKEG--LLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMI 743

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+   G++  A +L+ ++V  G V     Y+ L     +  +++E  K+   M   G+ 
Sbjct: 744 DGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLP 803

Query: 374 PDGLACSVMIR 384
            D +  + ++ 
Sbjct: 804 LDEITYTTLVH 814



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 137/300 (45%), Gaps = 42/300 (14%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D++ +V   + F N G   +A G+F+ +   G    +   + LL  + +   +E++  + 
Sbjct: 178 DLLIHVYCTQ-FRNVG-FRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVF 235

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M +     SP+V  +++ I  FC  G +++A+ +   ME LG +PN VT + LI G C
Sbjct: 236 ETMRQ---GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLC 292

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA--------EKLFSK--- 366
             GNLDEA++  +K+V  G  ++   YS L+  L++ ++  EA        EK F+    
Sbjct: 293 KHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEV 352

Query: 367 ------------------------MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
                                   M++ G+ P+ +  + +I+  C  GQ+ +  C+ E++
Sbjct: 353 VYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEM 412

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              GF  S++    + ++  LC  +    A +  R ML + +      +  +V  L K G
Sbjct: 413 LSRGF--SINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEG 470



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 65/128 (50%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++  ++EG + +V     +     K    ++ + VL++M  +D+ P+ I Y  +I  + 
Sbjct: 688 LIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYS 747

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + GDM  A +L+  M    + PD +TY  +  GFC  G++E+   +   M + G   + +
Sbjct: 748 KSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEI 807

Query: 236 AYSALLDG 243
            Y+ L+ G
Sbjct: 808 TYTTLVHG 815


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 163/312 (52%), Gaps = 8/312 (2%)

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           ++  + NLCE   +      +L +M +  + P+ +  N V+   C++G +  A +++  M
Sbjct: 202 LIHALCNLCEWKHVTT----LLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMM 257

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + PD++TY +++ G C    +++A  +F +M R+GC  N+V+Y+ L++G C++  +
Sbjct: 258 IQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRI 317

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           ++A+ L  EM ++  +  PN +TY+++I   C  G +++A+ + + M A G  PN VT S
Sbjct: 318 DKAMYLFEEMCRQ--ELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYS 375

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            L+   C    L EA  L+  +           Y+  +  + R   L+ A  LFS +   
Sbjct: 376 ILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPR 435

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G++PD    ++MIR LC  G + E   L+ ++++ G L   +   ++ +  GL + N + 
Sbjct: 436 GLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLR--NGCTYNTITQGLLQNNKTS 493

Query: 431 EAAKLARFMLKK 442
            A +L   ML +
Sbjct: 494 RAIQLLEEMLAR 505



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 210/449 (46%), Gaps = 35/449 (7%)

Query: 8   RILSSSVNIKNSKIFALHFTTASPA-ERFYT--HLQKNPNNIE-KTLATVKAKLDSTCVI 63
             LSSS N   SK  +LHF T   A   F+   H+   P   E   L T  AK+     +
Sbjct: 18  HFLSSSQNNFQSK--SLHFNTLDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTV 75

Query: 64  EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE 123
             L +   S    GI   ++          + + N  C ++R+    S++  +++   + 
Sbjct: 76  LSLSKKMDS---FGIPPDVYTL--------TIVINSFCHLNRVDFALSVLAKILKLGHQP 124

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
                  +++    LC   ++  EA+ V  KM     +P+ + Y  ++   C+   +  A
Sbjct: 125 DTATFTTLVR---GLCVVGKIG-EALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEA 180

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             L   M    + PDI TY S+I   CN    +    L   M +     N+V+ + ++D 
Sbjct: 181 LNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDA 240

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +C+ G +  A +++ +M  +GG   P+VVTY +++   C +  M EA+ + D M   GC 
Sbjct: 241 LCKEGKVTEAHDVV-DMMIQGG-VEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCV 298

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
            N V+ +TLI G+C    +D+A  L +++     + +   YS+L+  L    RL++A  L
Sbjct: 299 CNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIAL 358

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLL 421
           F++M+A G  P+ +  S+++  LC   ++ E   L + IE     S++D D  ++++ + 
Sbjct: 359 FNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEG----SNLDPDVQVYNIAID 414

Query: 422 GLCRKNHSVEAAK-----LARFMLKKRIW 445
           G+CR    +EAA+     LA   L+  +W
Sbjct: 415 GMCRAG-DLEAARDLFSNLAPRGLQPDVW 442



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 122/245 (49%), Gaps = 2/245 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+ V   M       + + YN +I  +C+   +  A  L + M   +L P+ +TY ++
Sbjct: 283 DEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTL 342

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C+ GRL+DA  LF  M   G   NLV YS LLD +C+   +  A+ LL  +E  G 
Sbjct: 343 IHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIE--GS 400

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  P+V  Y   I   C  G ++ A  +   +   G  P+  T + +I+G C  G LDEA
Sbjct: 401 NLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEA 460

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L  ++   G + +G  Y+++   L++  +   A +L  +MLA G   D    +++++ 
Sbjct: 461 SKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKM 520

Query: 386 LCLGG 390
           L   G
Sbjct: 521 LSDDG 525



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 122/249 (48%), Gaps = 3/249 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V +     GCV +V     + N   K +  ++AM++  +M   +L P+T+ Y+ +I  
Sbjct: 286 VKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHG 345

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G +  A  L   M      P+++TY  ++   C   RL +A  L K ++      +
Sbjct: 346 LCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPD 405

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+  +DG+CR G +E A +L   +   G    P+V T+  +I+  C +G++ EA  +
Sbjct: 406 VQVYNIAIDGMCRAGDLEAARDLFSNLAPRG--LQPDVWTHNIMIRGLCKRGLLDEASKL 463

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M+  GC  N  T +T+ +G         A QL+++++A G  S+    ++L+V+++ 
Sbjct: 464 FREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARG-FSADVSTTALLVKMLS 522

Query: 354 TKRLKEAEK 362
              L ++ K
Sbjct: 523 DDGLDQSVK 531



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 3/157 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+  RLA EAM +L+ +   +L PD  +YN  I   C  GD+ AA +L   +    L P
Sbjct: 381 LCKNHRLA-EAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQP 439

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ T+  MI+G C  G L++A  LF+ M  +GC  N   Y+ +  G+ +     RA++LL
Sbjct: 440 DVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLL 499

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
            EM   G   S +V T   ++++    G+ +    IL
Sbjct: 500 EEMLARG--FSADVSTTALLVKMLSDDGLDQSVKQIL 534


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 149/298 (50%), Gaps = 5/298 (1%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDIITYV 203
           A +A+ +L  M  F   PD + YN +I+ FC+  ++  A E+ K +    +  PD++TY 
Sbjct: 222 AEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYT 281

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           SMI G+C AG++ +A  L   M R G     V ++ L+DG  + G M  A E+ G+M   
Sbjct: 282 SMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISF 341

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G  C P+VVT+TS+I  +C  G + +   + + M A G  PN  T S LI   C E  L 
Sbjct: 342 G--CFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLL 399

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +A +L+ ++ +   +     Y+ ++    +  ++ EA  +  +M     KPD +  +++I
Sbjct: 400 KARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI 459

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
              C+ G++ E   ++  +  IG   S D    S LL  L +   + EA  L +   K
Sbjct: 460 IGHCMKGRMFEAVSIFHKMVAIG--CSPDKITVSSLLSCLLKAGMAKEAYHLNQIARK 515



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 183/383 (47%), Gaps = 27/383 (7%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           +   +G RF+ ++  + + RHS + YN             +   + E  K +G   + ++
Sbjct: 81  NNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRL 140

Query: 132 MK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           +  ++ +  EK +L      +L+    F++    ++ N+++        ++  D +   M
Sbjct: 141 LGFLVSSFAEKGKLHFATALLLQ---SFEVEGCCMVVNSLLN------TLVKLDRVEDAM 191

Query: 191 GLIDLY------PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L D +       D  T+  +I+G C  G+ E A  L  VM   GC  ++V Y+ L+ G 
Sbjct: 192 KLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGF 251

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+   + +A E+  ++ K G  CSP+VVTYTS+I  +C  G M+EA  +LD M  LG  P
Sbjct: 252 CKSNELNKASEMFKDV-KSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYP 310

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
             VT + L+ G+   G +  A ++  K+++ G       ++SL+    R  ++ +  +L+
Sbjct: 311 TNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLW 370

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD----SDIHSVLL 420
            +M A G+ P+    S++I  LC   ++L+        E +G L+S D      +++ ++
Sbjct: 371 EEMNARGMFPNAFTYSILINALCNENRLLKA------RELLGQLASKDIIPQPFMYNPVI 424

Query: 421 LGLCRKNHSVEAAKLARFMLKKR 443
            G C+     EA  +   M KK+
Sbjct: 425 DGFCKAGKVNEANVIVEEMEKKK 447



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 112/243 (46%), Gaps = 11/243 (4%)

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           FK+  RH    +   Y+ L   +C+ G  + A ++   M+ +G   SPN      ++  F
Sbjct: 95  FKLNIRH----SFWTYNLLTRSLCKAGLHDLAGQMFECMKSDG--VSPNNRLLGFLVSSF 148

Query: 282 CGKGMMKEALGIL-DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
             KG +  A  +L    E  GC    + +++L+        +++A +L D+ +   S + 
Sbjct: 149 AEKGKLHFATALLLQSFEVEGCC---MVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCND 205

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ L+  L    + ++A +L   M   G +PD +  + +I+  C   ++ +   +++
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           D+ K G + S D   ++ ++ G C+     EA+ L   ML+  I+      + +V+   K
Sbjct: 266 DV-KSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAK 324

Query: 461 SGD 463
           +G+
Sbjct: 325 AGE 327


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 158/300 (52%), Gaps = 5/300 (1%)

Query: 137 NLCEKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
           +LC KA+  ++A  +   M  E  + PD + Y+ +I  FC+  ++  A++L K M  ++ 
Sbjct: 130 SLC-KAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNC 188

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            P++ TY + + G    GR+ DA G+++ M   GC+ +++ YS L+ G       ++A E
Sbjct: 189 VPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHE 248

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           L   M   G  C PN VTY  ++   C +    EA  +  +M   GC P++VT +TL+ G
Sbjct: 249 LFEAMISRG--CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYG 306

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           FC  G +++A ++ D++V+ G       Y+ L+    R  +  EA +LF  M++   KPD
Sbjct: 307 FCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPD 366

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            ++ ++MI  L    ++ +   ++E +E+     S D   ++ L+ GLC +    EA K+
Sbjct: 367 TVSHNIMIDGLSKAKRLDDAVEVFERMEQ-DHGCSPDLVTYNSLIFGLCGEQRLSEAMKV 425



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 158/314 (50%), Gaps = 12/314 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG-- 191
           VI  LC+  R+ + A+ +L  M +    PD   ++ +I   C+   +  A E ++GM   
Sbjct: 55  VIQELCKAGRV-DSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRT 113

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM-KRHGCAANLVAYSALLDGICRLGSM 250
           +        +Y S++   C A ++  A  +F  M        ++V+YS L+DG C++  +
Sbjct: 114 ISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDEL 173

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
            RA +L  +M     +C PNV TY + +     KG + +A G+ + M + GC+P+ +T S
Sbjct: 174 GRAEKLYKQMIDL--NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYS 231

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           TLI GF +    D+A++L + +++ G   +   Y+ L+  L +  +  EA +LF KM+  
Sbjct: 232 TLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER 291

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNH 428
           G  PD +  + ++   C  G++ +   +++++   G     D D+  ++ LL G  R   
Sbjct: 292 GCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGH----DPDVVAYNCLLKGFFRAGK 347

Query: 429 SVEAAKLARFMLKK 442
             EA +L + M+ +
Sbjct: 348 PGEARQLFQVMVSR 361



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 129/270 (47%), Gaps = 5/270 (1%)

Query: 124 GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
            CV +V       N L  K R+A+ A  V  +M      PD I Y+ +I  F        
Sbjct: 187 NCVPNVTTYNAFLNGLMRKGRIAD-AQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQ 245

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A EL + M      P+ +TY  ++ G C   + ++A  LF+ M   GC  + V Y+ LL 
Sbjct: 246 AHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLY 305

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G C +G +E+A+E+  EM  +G D  P+VV Y  +++ F   G   EA  +   M +  C
Sbjct: 306 GFCNVGKIEQAVEVFDEMVSKGHD--PDVVAYNCLLKGFFRAGKPGEARQLFQVMVSREC 363

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELVRTKRLKEAE 361
            P+ V+ + +I G      LD+A ++ +++      S     Y+SL+  L   +RL EA 
Sbjct: 364 KPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAM 423

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           K+F ++    + PD  A +V++  +   G 
Sbjct: 424 KVFKEIDRLKLSPDPHAFNVLLEAMYAAGH 453



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 112/208 (53%), Gaps = 3/208 (1%)

Query: 115 DVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++ EA    GC   +V    ++  LC++++  +EA  + RKM E    PD + Y  ++  
Sbjct: 248 ELFEAMISRGCRPNAVTYNCLLHGLCKESK-PDEAHELFRKMVERGCDPDKVTYTTLLYG 306

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC  G +  A E+   M      PD++ Y  ++KGF  AG+  +A  LF+VM    C  +
Sbjct: 307 FCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPD 366

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            V+++ ++DG+ +   ++ A+E+   ME++ G CSP++VTY S+I   CG+  + EA+ +
Sbjct: 367 TVSHNIMIDGLSKAKRLDDAVEVFERMEQDHG-CSPDLVTYNSLIFGLCGEQRLSEAMKV 425

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGN 321
              ++ L  +P+    + L++     G+
Sbjct: 426 FKEIDRLKLSPDPHAFNVLLEAMYAAGH 453



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 6/224 (2%)

Query: 113 IIDVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           I D    Y+E    GC   V     + +    AR  ++A  +   M     RP+ + YN 
Sbjct: 208 IADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNC 267

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           ++   C++     A EL + M      PD +TY +++ GFCN G++E A  +F  M   G
Sbjct: 268 LLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKG 327

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              ++VAY+ LL G  R G    A +L   M     +C P+ V++  +I        + +
Sbjct: 328 HDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSR--ECKPDTVSHNIMIDGLSKAKRLDD 385

Query: 290 ALGILDRMEA-LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           A+ + +RME   GC+P+ VT ++LI G C E  L EA ++  ++
Sbjct: 386 AVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI 429


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 172/366 (46%), Gaps = 20/366 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+    +++ D+V     +  +       V+   C K  L +   W   +M    L
Sbjct: 340 CDKGRVSDALTVVEDMVH---HKVILDEAVYTTVLSGFCNKGDLVSARRW-FDEMQRKGL 395

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
             D + Y  +I   C  G++  A+++++ M    L  D +TY  ++ G+C  G++ +A  
Sbjct: 396 ATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQ 455

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +   M + G A N+V Y+AL DG+C+ G ++ A ELL EM  +G +   N  TY S+I  
Sbjct: 456 VHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLEL--NACTYNSLING 513

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G + +A+  +  M+A G  P+  T +TLI   C  G LD A+ L+ +++  G   +
Sbjct: 514 LCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPT 573

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG------QVLE 394
              Y+ L+     + R++  +KL   ML   + P+    + ++++ C+G       ++ +
Sbjct: 574 IVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYK 633

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           G C   ++E        + + +++L+ G C+     EA      M++K   L       +
Sbjct: 634 GMC-SRNVEP-------NENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSAL 685

Query: 455 VEHLKK 460
           +  L K
Sbjct: 686 IRLLNK 691



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 150/300 (50%), Gaps = 6/300 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C +  ++    ++ D+V    E    V   ++ +   LC+K R++ +A+ V+  M    +
Sbjct: 305 CALGELENAVKLLDDMVARGVEPNATVYTSVVAL---LCDKGRVS-DALTVVEDMVHHKV 360

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
             D  +Y  V+  FC KGD+++A      M    L  D +TY ++I G C AG L++A  
Sbjct: 361 ILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEK 420

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + + M       + V Y+ L+DG C+ G M  A ++   M + G   +PNVVTYT++   
Sbjct: 421 VLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRG--VAPNVVTYTALSDG 478

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G ++ A  +L  M   G   N  T ++LI G C  G LD+A + +  + A G    
Sbjct: 479 LCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPD 538

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+  L ++  L  A  L  +ML +G+KP  +  +V++   C+ G+V  G  L E
Sbjct: 539 VYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLE 598



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 161/315 (51%), Gaps = 21/315 (6%)

Query: 151 VLRKMPEFDLRPDTIIYNNVI-RLFCEKGDMIAADELMKGMGLIDLYPD--IITYVSMIK 207
           +LR++ ++ + P     N V+ RL  ++     A EL +G+      PD  + +Y  ++K
Sbjct: 222 LLRRVRQYGISPSPEACNAVLSRLPLDE-----AIELFQGL------PDKNVCSYNILLK 270

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             C AGR+EDA  LF  M       ++V Y  L+ G C LG +E A++LL +M   G   
Sbjct: 271 VLCGAGRVEDARQLFDEM---ASPPDVVTYGILIHGYCALGELENAVKLLDDMVARG--V 325

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PN   YTSV+ + C KG + +AL +++ M       +    +T++ GFC +G+L  A +
Sbjct: 326 EPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARR 385

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
             D++   G  + G  Y++L+  L R   LKEAEK+  +MLA  +  D +  +V++   C
Sbjct: 386 WFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYC 445

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
             G++ E F ++  + + G   +V +  ++ L  GLC++     A +L   M  K + L 
Sbjct: 446 KRGKMAEAFQVHNTMVQRGVAPNVVT--YTALSDGLCKQGDVQAANELLHEMSNKGLELN 503

Query: 448 GPYVDKIVEHLKKSG 462
               + ++  L K+G
Sbjct: 504 ACTYNSLINGLCKAG 518



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 154/314 (49%), Gaps = 5/314 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC    L  EA  VL++M    L  D + Y  ++  +C++G M  A ++  
Sbjct: 400 VTYTTLINGLCRAGEL-KEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHN 458

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P+++TY ++  G C  G ++ A  L   M   G   N   Y++L++G+C+ G
Sbjct: 459 TMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAG 518

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +++A+  + +M+  G    P+V TYT++I   C  G +  A  +L  M   G  P  VT
Sbjct: 519 YLDQAMRTMADMDAAG--LKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVT 576

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + L+ GFC+ G ++   +L++ ++      +   Y+SL+ +      +K   +++  M 
Sbjct: 577 YNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMC 636

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           +  V+P+    +++I+  C    + E    + ++ + GF  +  S  +S L+  L +K  
Sbjct: 637 SRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASS--YSALIRLLNKKKK 694

Query: 429 SVEAAKLARFMLKK 442
            VEA KL   M K+
Sbjct: 695 FVEARKLFHDMRKE 708



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 136/274 (49%), Gaps = 3/274 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C++ ++A EA  V   M +  + P+ + Y  +    C++GD+ AA+EL+  M    L  +
Sbjct: 445 CKRGKMA-EAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELN 503

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
             TY S+I G C AG L+ A      M   G   ++  Y+ L+D +C+ G ++RA +LL 
Sbjct: 504 ACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQ 563

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM   G    P +VTY  ++  FC  G ++    +L+ M      PN  T ++L+K +C+
Sbjct: 564 EMLDNG--IKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCI 621

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
             N+    ++   + +     +   Y+ L+    + + +KEA+   ++M+  G +    +
Sbjct: 622 GNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASS 681

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
            S +IR L    + +E   L+ D+ K GF +  D
Sbjct: 682 YSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPD 715



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 40/244 (16%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KA   ++AM  +  M    L+PD   Y  +I   C+ G++  A +L++ M   
Sbjct: 510 LINGLC-KAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDN 568

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P I+TY  ++ GFC +GR+E    L + M       N   Y++L+   C   +M+  
Sbjct: 569 GIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKST 628

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E+   M     +  PN  TY  +I+  C    MKEA    + M              + 
Sbjct: 629 TEIYKGMCSR--NVEPNENTYNILIKGHCKARSMKEAQYFHNEM--------------IE 672

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG-- 371
           KGF +                     +   YS+L+  L + K+  EA KLF  M   G  
Sbjct: 673 KGFRL---------------------TASSYSALIRLLNKKKKFVEARKLFHDMRKEGFT 711

Query: 372 VKPD 375
            +PD
Sbjct: 712 AEPD 715



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 2/161 (1%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           D+++   + G   ++    V+ N  C   R+      +L  M E ++ P+   YN++++ 
Sbjct: 560 DLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEG-GKKLLEWMLEKNIHPNATTYNSLMKQ 618

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C   +M +  E+ KGM   ++ P+  TY  +IKG C A  +++A      M   G    
Sbjct: 619 YCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLT 678

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
             +YSAL+  + +      A +L  +M KEG    P+V  +
Sbjct: 679 ASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNF 719


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 188/460 (40%), Gaps = 76/460 (16%)

Query: 17  KNSKIFALH---FTTASPA--ERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFP 71
           K S+   LH   FTTA  A        + +  N +E  L  +   L S  V +V+     
Sbjct: 17  KQSRFRCLHANLFTTAQGAAISNEVLTVMETVNPMEDALEKLAPFLSSEIVNDVMRE--Q 74

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
            + ++G RFFIW   + S+R S   +N   +M            ++E  K     +    
Sbjct: 75  RRPELGFRFFIWTTRRRSFR-SWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPT 133

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
             V+     K+ +A +A+    KM +F  +PD   YN+++ +  +K   + A  +   M 
Sbjct: 134 FSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQML 193

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLF----------------------------- 222
            ++  P+  T+V ++ G C  G+ +DA  +F                             
Sbjct: 194 KLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTD 253

Query: 223 ------KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG------------ 264
                   MK  GC  + +  +ALLDG C+LG ++ A  LL   EKEG            
Sbjct: 254 DVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLI 313

Query: 265 ---------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
                                    P+VV YT +I+ FC  GM+  AL +L+ M   G +
Sbjct: 314 DGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLS 373

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+    + LIKGFC  G LD+A  L  ++       +   Y+ L+  + R   L EA ++
Sbjct: 374 PDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQI 433

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           F++M   G  P  +  + +I  LC  G++ E   L+  +E
Sbjct: 434 FNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKME 473



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 178/364 (48%), Gaps = 16/364 (4%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++ +++EG V+ +K    + +   +A+  +E     RKM +  + PD ++Y  +IR FC
Sbjct: 293 LLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFC 352

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           E G +  A  ++  M    L PD   Y ++IKGFC+ G L+ A  L   + ++ C     
Sbjct: 353 EVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSC 412

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L+ G+CR G ++ A ++  +ME  G  CSP+++T+ ++I   C  G ++EA  +  
Sbjct: 413 TYTILICGMCRNGLLDEARQIFNQMENLG--CSPSIMTFNALIDGLCKAGELEEARHLFY 470

Query: 296 RMEALGCAPN---RVT-----ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           +ME +G  P+   R++     +     GF      ++A++++D++V  G   S   Y  L
Sbjct: 471 KME-IGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCL 529

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +    R  +L  A  L+ K L S    +     +       G       CL E    + F
Sbjct: 530 MTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELEKAVRCLLE----MNF 585

Query: 408 -LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
            L++ +   +++ L+GLC+   S EA K+   + + ++ +  P    ++  L K G+ E+
Sbjct: 586 KLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNLEM 645

Query: 467 ITNL 470
             ++
Sbjct: 646 AVDI 649



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            +S L+    + G  E+A+E  G+M+  G  C P+V TY S++ +   K +   AL + +
Sbjct: 133 TFSVLIAAYAKSGMAEKAVESFGKMKDFG--CKPDVFTYNSILHVMVQKEVFLLALAVYN 190

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +M  L   PNR T   L+ G C  G  D+A ++ D++   G   +   Y+ ++  L + K
Sbjct: 191 QMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAK 250

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R  +  +L + M  SG  PD + C+ ++   C  GQ+ E F L +  EK G++  +    
Sbjct: 251 RTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKG-- 308

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +S L+ GL R     E  +  R M K  I
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKMFKAGI 337


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 149/298 (50%), Gaps = 5/298 (1%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDIITYV 203
           A +A+ +L  M  F   PD + YN +I+ FC+  ++  A E+ K +    +  PD++TY 
Sbjct: 222 AEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYT 281

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           SMI G+C AG++ +A  L   M R G     V ++ L+DG  + G M  A E+ G+M   
Sbjct: 282 SMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISF 341

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G  C P+VVT+TS+I  +C  G + +   + + M A G  PN  T S LI   C E  L 
Sbjct: 342 G--CFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLL 399

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +A +L+ ++ +   +     Y+ ++    +  ++ EA  +  +M     KPD +  +++I
Sbjct: 400 KARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI 459

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
              C+ G++ E   ++  +  IG   S D    S LL  L +   + EA  L +   K
Sbjct: 460 IGHCMKGRMFEAVSIFHKMVAIG--CSPDKITVSSLLSCLLKAGMAKEAYHLNQIARK 515



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 183/383 (47%), Gaps = 27/383 (7%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           +   +G RF+ ++  + + RHS + YN             +   + E  K +G   + ++
Sbjct: 81  NNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRL 140

Query: 132 MK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           +  ++ +  EK +L      +L+    F++    ++ N+++        ++  D +   M
Sbjct: 141 LGFLVSSFAEKGKLHFATALLLQ---SFEVEGCCMVVNSLLN------TLVKLDRVEDAM 191

Query: 191 GLIDLY------PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L D +       D  T+  +I+G C  G+ E A  L  VM   GC  ++V Y+ L+ G 
Sbjct: 192 KLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGF 251

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+   + +A E+  ++ K G  CSP+VVTYTS+I  +C  G M+EA  +LD M  LG  P
Sbjct: 252 CKSNELNKASEMFKDV-KSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYP 310

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
             VT + L+ G+   G +  A ++  K+++ G       ++SL+    R  ++ +  +L+
Sbjct: 311 TNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLW 370

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD----SDIHSVLL 420
            +M A G+ P+    S++I  LC   ++L+        E +G L+S D      +++ ++
Sbjct: 371 EEMNARGMFPNAFTYSILINALCNENRLLKA------RELLGQLASKDIIPQPFMYNPVI 424

Query: 421 LGLCRKNHSVEAAKLARFMLKKR 443
            G C+     EA  +   M KK+
Sbjct: 425 DGFCKAGKVNEANVIVEEMEKKK 447



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 112/243 (46%), Gaps = 11/243 (4%)

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           FK+  RH    +   Y+ L   +C+ G  + A ++   M+ +G   SPN      ++  F
Sbjct: 95  FKLNIRH----SFWTYNLLTRSLCKAGLHDLAGQMFECMKSDG--VSPNNRLLGFLVSSF 148

Query: 282 CGKGMMKEALGIL-DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
             KG +  A  +L    E  GC    + +++L+        +++A +L D+ +   S + 
Sbjct: 149 AEKGKLHFATALLLQSFEVEGCC---MVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCND 205

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ L+  L    + ++A +L   M   G +PD +  + +I+  C   ++ +   +++
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           D+ K G + S D   ++ ++ G C+     EA+ L   ML+  I+      + +V+   K
Sbjct: 266 DV-KSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAK 324

Query: 461 SGD 463
           +G+
Sbjct: 325 AGE 327


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 152/296 (51%), Gaps = 2/296 (0%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EAM ++R+M    + PD + YN +I   C+   +  A  L+  M     +P+ +T  +++
Sbjct: 16  EAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLM 75

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C  GR+++A  L + MK+ G  A++V Y  L+ G C  G+++R  EL  EM  +G  
Sbjct: 76  DGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKG-- 133

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            S NVVTY+ ++   C  G  KEA  +L+ M   G  P+ VT + LI G C +G    A 
Sbjct: 134 ISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAM 193

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L++ +V  G   S   Y+ L+  L +   + +A K+   M+  G K D +  + +++ L
Sbjct: 194 DLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGL 253

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           C  G+V E   L+  +         +    ++L+ GLC++    +A K+ R M+KK
Sbjct: 254 CDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 309



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 140/280 (50%), Gaps = 4/280 (1%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N V++  C  G +  A  L++ MG   + PDI++Y ++I G C A +L++A GL   M+ 
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            GC  N V  + L+DG+C+ G M+ A+ELL  M+K+G D   +VV Y ++I  FC  G +
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFD--ADVVLYGTLISGFCNNGNL 119

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
                + D M   G + N VT S L+ G C  G   EA  +++ +   G       Y+ L
Sbjct: 120 DRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGL 179

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  L +  R   A  L + M+  G +P  +  +V++  LC  G V++ F +   + + G 
Sbjct: 180 IDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKG- 238

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
               D   ++ L+ GLC K    EA KL   M      L+
Sbjct: 239 -KKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLE 277



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 150/322 (46%), Gaps = 11/322 (3%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID--- 194
           LC K  L  +A  +LR M E   + D + YN +++  C+KG +  A +L   M   D   
Sbjct: 218 LC-KEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM--FDNEN 274

Query: 195 -LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P++ T+  +I G C  GRL  A  + + M + G   NLV Y+ LL G  + G ++ A
Sbjct: 275 CLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEA 334

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +EL  ++   G    PN  TY+ +I  FC   M+  A G+   M   G  P     +TL+
Sbjct: 335 MELWKQVLDLG--FVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLM 392

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C EG+L++A  L  ++           +++++   ++    +  ++L  KM+  G++
Sbjct: 393 ASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLR 452

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD L  S +I  L   G++ E     E +   GF  + D+ ++  LL GL  K  + E  
Sbjct: 453 PDALTFSTLINRLSKLGELDEAKSALERMVASGF--TPDALVYDSLLKGLSSKGDTTEII 510

Query: 434 KLARFMLKKRIWLQGPYVDKIV 455
            L   M  K   L    V  I+
Sbjct: 511 NLLHQMAAKGTVLDRKIVSTIL 532



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 123/256 (48%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  VL  M E  + PD + Y  +I   C+ G    A +L+  M      P  +TY  ++
Sbjct: 156 EANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLL 215

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C  G + DA  + ++M   G  A++V Y+ L+ G+C  G ++ AL+L   M      
Sbjct: 216 SGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENC 275

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PNV T+  +I   C +G + +A+ I  +M   G   N VT + L+ G    G + EA 
Sbjct: 276 LEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAM 335

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L  +V+  G V +   YS L+    + + L  A+ LF +M   G+ P     + ++  L
Sbjct: 336 ELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 395

Query: 387 CLGGQVLEGFCLYEDI 402
           C  G + +   L++++
Sbjct: 396 CKEGSLEQAKSLFQEM 411



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 119/248 (47%), Gaps = 2/248 (0%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C KA    EAM + +++ +    P++  Y+ +I  FC+   +  A  L   M    L P 
Sbjct: 325 CLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPA 384

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           +  Y +++   C  G LE A  LF+ M    C  ++++++ ++DG  + G  +   EL  
Sbjct: 385 LFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQM 444

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +M + G    P+ +T++++I      G + EA   L+RM A G  P+ +   +L+KG   
Sbjct: 445 KMVEMG--LRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSS 502

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           +G+  E   L+ ++ A G+V      S+++  L  + +  +  +L         +   ++
Sbjct: 503 KGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASIS 562

Query: 379 CSVMIREL 386
           C+ ++ +L
Sbjct: 563 CNELLMQL 570


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 184/383 (48%), Gaps = 50/383 (13%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V ++    ++  LC   R ++    VLR+M E    PD   YNN+++  C++     A E
Sbjct: 125 VDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALE 184

Query: 186 LM----------------------------------------KGMGLID------LYPDI 199
           L+                                        K M +++      + PD 
Sbjct: 185 LLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDC 244

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           +TY S++ G+C++G+ ++A G  K M+  G   N+V YS+L++ +C+ G    A ++   
Sbjct: 245 MTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDS 304

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M K G    P++ TY +++Q  C +G + E+  + D M  +G  P+ +T +TLI G C+ 
Sbjct: 305 MTKRG--LEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLA 362

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +DEA +L+  +V+ G       Y +L+    R  R+ +A  LF +M++SGV P+ +  
Sbjct: 363 GKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 422

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +++++ L    +      LY  I K G  + ++   ++++L GLC+ N + EA ++ + +
Sbjct: 423 NIILQGLFHTRRTAAAKELYVSITKSG--TQLELSTYNIILHGLCKNNLTDEALRMFQNL 480

Query: 440 LKKRIWLQGPYVDKIVEHLKKSG 462
               + L+    + ++  L K G
Sbjct: 481 CLTDLQLETRTFNIMIGALLKCG 503



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 161/327 (49%), Gaps = 20/327 (6%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC-EKGDMIAADEL 186
           +V    ++   C +A   +     L  + +   R D I +  +++  C +K    A D +
Sbjct: 91  TVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIV 150

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM---KRHGCAANLVAYSALLDG 243
           ++ M  +   PD+ +Y +++KG C+  R ++A  L  +M   +  G   ++V+Y+ +L+G
Sbjct: 151 LRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNG 210

Query: 244 ICRLG--------SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
             + G        +M++A+E+L  M K G    P+ +TY S++  +C  G  KEA+G L 
Sbjct: 211 FFKEGIQTKLTAQAMDKAMEVLNTMVKNG--VMPDCMTYNSILHGYCSSGQPKEAIGTLK 268

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +M + G  PN VT S+L+   C  G   EA ++ D +   G       Y +L+    +  
Sbjct: 269 KMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEG 328

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R+ E+EKLF  M+  GVKPD +  + +I   CL G++ E   L   +  +G    V  DI
Sbjct: 329 RVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG----VKPDI 384

Query: 416 --HSVLLLGLCRKNHSVEAAKLARFML 440
             +  L+ G CR +   +A  L + M+
Sbjct: 385 VTYGTLINGYCRVSRMDDALALFKEMV 411



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 6/349 (1%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
            P   I  ++  + +G   +V     + N LC+  R + EA  +   M +  L PD   Y
Sbjct: 259 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGR-STEARKIFDSMTKRGLEPDIATY 317

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
             +++  C++G +I +++L   M  I + PDIITY ++I G C AG++++A  L   M  
Sbjct: 318 RTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS 377

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   ++V Y  L++G CR+  M+ AL L  EM   G   SPN++TY  ++Q        
Sbjct: 378 VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG--VSPNIITYNIILQGLFHTRRT 435

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
             A  +   +   G      T + ++ G C     DEA ++   +           ++ +
Sbjct: 436 AAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 495

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  L++  R+ EA+ LF+   A+G+ PD    S+M   L   G + E   L+  +E+ G 
Sbjct: 496 IGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENG- 554

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456
             S DS + + ++  L ++     A      + +K   L+      ++E
Sbjct: 555 -CSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 602



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 127/266 (47%), Gaps = 14/266 (5%)

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           M   G   + P + TY  +I   C AGRL+        + + G   + + ++ LL G+C 
Sbjct: 80  MARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCA 139

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCA 303
                 A++++     E G C P+V +Y ++++  C +   +EAL +L  M      G  
Sbjct: 140 DKRTSDAMDIVLRRMTELG-CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSP 198

Query: 304 PNRVTISTLIKGFCVEG--------NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           P+ V+ +T++ GF  EG         +D+A ++++ +V  G +     Y+S++     + 
Sbjct: 199 PDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 258

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           + KEA     KM + GV+P+ +  S ++  LC  G+  E   +++ + K G     D   
Sbjct: 259 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGL--EPDIAT 316

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLK 441
           +  LL G C++   +E+ KL   M++
Sbjct: 317 YRTLLQGHCKEGRVIESEKLFDLMVR 342



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 108/290 (37%), Gaps = 60/290 (20%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-GDCSPNVVTY 274
           EDA  +F  + R G  A++   +  L  + R  S   A+     M + G G  +P V TY
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTY 95

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV---------------- 318
             +I   C  G +      L  +   G   + +T + L+KG C                 
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMT 155

Query: 319 --------------------EGNLDEAYQLIDKVV---AGGS----VSSGGCYSSLVVEL 351
                               E    EA +L+  +     GGS    VS     +    E 
Sbjct: 156 ELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEG 215

Query: 352 VRTK----RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           ++TK     + +A ++ + M+ +GV PD +  + ++   C  GQ  E     + +   G 
Sbjct: 216 IQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGV 275

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK---------RIWLQG 448
             +V +  +S L+  LC+   S EA K+   M K+         R  LQG
Sbjct: 276 EPNVVT--YSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 323


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 161/319 (50%), Gaps = 7/319 (2%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           EGCV +V+   V+          ++A+ +   M      P TI YN +IR  C  GD+  
Sbjct: 291 EGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKR 350

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  +   MG  D  PD+ TY ++I GF  AG L+ A  ++  M   GC  N+V Y+ ++D
Sbjct: 351 ALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVD 410

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            +C+    ++A  L+ +M  E  +C PN +T+ ++I+  C  G    AL +   M   GC
Sbjct: 411 VLCKKVMFDQAENLIDKMSLE--NCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGC 468

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN  T + L+ G   EGN ++A +++ +++  G   S   Y++ +  L + + +KEA  
Sbjct: 469 PPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMI 528

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           L  +M+  G++PD    + +I   C  G V     +   ++ +    ++ +  ++ L+ G
Sbjct: 529 LLGRMIIQGIQPDAFTFNAIIHAYCKEGNVRAAAWMLGRMDAVNCPRNIVA--YTSLMSG 586

Query: 423 LCRKNHSVEAAKLARFMLK 441
           LC + H ++ A +  ++LK
Sbjct: 587 LCSQ-HKLDDAMV--YLLK 602



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 2/260 (0%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C+  V+    + +   KA   + AM +   M     +P+ ++Y N++ + C+K     A+
Sbjct: 363 CLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAE 422

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L+  M L +  P+ +T+ ++I+  C+ GR   A  +F  M+R+GC  N   Y+ LL G+
Sbjct: 423 NLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGL 482

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            R G+ E AL +L EM   G + S  +V+Y + I   C   M+KEA+ +L RM   G  P
Sbjct: 483 FREGNCEDALRMLTEMLNHGFELS--LVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQP 540

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           +  T + +I  +C EGN+  A  ++ ++ A     +   Y+SL+  L    +L +A    
Sbjct: 541 DAFTFNAIIHAYCKEGNVRAAAWMLGRMDAVNCPRNIVAYTSLMSGLCSQHKLDDAMVYL 600

Query: 365 SKMLASGVKPDGLACSVMIR 384
            KML  G+ P+    +V++R
Sbjct: 601 LKMLYEGICPNEATWNVLVR 620



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 144/327 (44%), Gaps = 10/327 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C  +R       +     A  + GC   +V++   + +   +  L    + V   M +  
Sbjct: 98  CAFARAGAADRALKTFYRARHDLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDNMRKAG 157

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           + P+   YN +I+  C+   + AA  ++  M      PD +++ ++I   C   RL++A 
Sbjct: 158 VEPNVYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLDRLDEAR 217

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           G+   M   G      +Y+A++  +C    M     ++ EM   G    P+ V YTS++ 
Sbjct: 218 GILAEMTPVG-----ASYNAVVHALCGQFRMREVFLVVDEMVHRG--LRPDTVAYTSIVG 270

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            FC    ++ A  IL RM   GC PN  T + L+KGF  +G + +A  + + +VA G   
Sbjct: 271 AFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAP 330

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           S   Y+ L+  L     LK A  +FS M  S   PD    S +I      G +     ++
Sbjct: 331 STISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIW 390

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRK 426
            D+   G   +V   +++ ++  LC+K
Sbjct: 391 NDMTNAGCKPNV--VVYTNMVDVLCKK 415



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 111/256 (43%), Gaps = 37/256 (14%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           SI  D+  A  +   VV   M+ V   LC+K  + ++A  ++ KM   +  P+T+ +N +
Sbjct: 388 SIWNDMTNAGCKPNVVVYTNMVDV---LCKKV-MFDQAENLIDKMSLENCPPNTLTFNTL 443

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           IR  C+ G    A  +  GM      P+  TY  ++ G    G  EDA  +   M  HG 
Sbjct: 444 IRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHGF 503

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEME-------------------KEGG------ 265
             +LV+Y+  + G+C++  ++ A+ LLG M                    KEG       
Sbjct: 504 ELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTFNAIIHAYCKEGNVRAAAW 563

Query: 266 --------DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
                   +C  N+V YTS++   C +  + +A+  L +M   G  PN  T + L++G  
Sbjct: 564 MLGRMDAVNCPRNIVAYTSLMSGLCSQHKLDDAMVYLLKMLYEGICPNEATWNVLVRGIF 623

Query: 318 VEGNLDEAYQLIDKVV 333
                     LID ++
Sbjct: 624 THLGTIGPMHLIDHII 639



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 88/204 (43%), Gaps = 5/204 (2%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           + ++    AG L+      + M+  G A    A  A +    R G+ +RAL+       +
Sbjct: 60  ATVRRLAAAGDLDGVQYTLQEMRLRGVACPEGALVAAICAFARAGAADRALKTFYRARHD 119

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
            G  +P V  Y  ++     + ++   + + D M   G  PN  T + LIK  C    + 
Sbjct: 120 LGCAAPTVRVYNHLLDALLRENLVAAVVPVYDNMRKAGVEPNVYTYNLLIKALCQNDRVG 179

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A +++D++   G       +++++  L +  RL EA  + ++M      P G + + ++
Sbjct: 180 AARRMLDEMARKGCRPDEVSHTTIISALCKLDRLDEARGILAEM-----TPVGASYNAVV 234

Query: 384 RELCLGGQVLEGFCLYEDIEKIGF 407
             LC   ++ E F + +++   G 
Sbjct: 235 HALCGQFRMREVFLVVDEMVHRGL 258


>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
          Length = 714

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 159/314 (50%), Gaps = 5/314 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMIKGFCNAGRLEDACG 220
           P+ I Y+ +I   C  G +  A EL + M   D + PD +TY ++I GFC+  +++ A  
Sbjct: 277 PNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALK 336

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + + MK++GC  N+  YSAL++G C+ G +E A E+  EM+  G    P+ V YT++I  
Sbjct: 337 IMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLG--LKPDTVGYTTLINF 394

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC  G + EA+ +L  M    C  + VT + ++ G C EG  +EA  +++++   G   +
Sbjct: 395 FCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYEGVYLN 454

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y  ++  L R   L++A +L   ML  GV P     + ++  LC  G+V +      
Sbjct: 455 KASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALL 514

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
            + ++GF    +S   ++L+  +CR+   + A +L   ++ +   L    +    E  K 
Sbjct: 515 GLLELGFKPEPNS--WALLVELICRERKLLPAFELLDDLVIQEPILSNQELTTSPEMRKT 572

Query: 461 SGDEELITNLPKIG 474
           +  ++   N PK G
Sbjct: 573 TAVKDSPFNSPKTG 586



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 129/251 (51%), Gaps = 4/251 (1%)

Query: 213 GRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
           G ++ A  + + MK+ H    NL+ YS L++G+C  G ++ A+EL  EM  +     P+ 
Sbjct: 257 GDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKD-QILPDA 315

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           +TY ++I  FC    +  AL I++ M+  GC PN    S L+ GFC EG L+EA ++ D+
Sbjct: 316 LTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDE 375

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           + + G       Y++L+    R  R+ EA +L   M  +  + D +  +V++  LC  G+
Sbjct: 376 MKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGR 435

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV 451
             E   + E +   G    ++   + ++L  LCR+    +A +L   ML + +       
Sbjct: 436 FEEAXGMLERLPYEGVY--LNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATS 493

Query: 452 DKIVEHLKKSG 462
           ++++ HL ++G
Sbjct: 494 NELLVHLCEAG 504



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + ++E  K+ GC  +V     + N  C++ RL  EA  V  +M    L+PDT+ Y  +I 
Sbjct: 335 LKIMEFMKKNGCNPNVFNYSALMNGFCKEGRL-EEAKEVFDEMKSLGLKPDTVGYTTLIN 393

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            FC  G +  A EL+K M       D +T+  ++ G C  GR E+A G+ + +   G   
Sbjct: 394 FFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYEGVYL 453

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N  +Y  +L+ +CR G +++A +L+G M   G    P+  T   ++   C  G + +A+ 
Sbjct: 454 NKASYRIVLNSLCREGELQKATQLVGLMLGRG--VLPHFATSNELLVHLCEAGKVGDAVM 511

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
            L  +  LG  P   + + L++  C E  L  A++L+D +V
Sbjct: 512 ALLGLLELGFKPEPNSWALLVELICRERKLLPAFELLDDLV 552



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 132/275 (48%), Gaps = 5/275 (1%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + N  C   R+K+   +  ++V   K++    ++    +I   C   ++ + A+ ++ 
Sbjct: 283 STLINGLCGSGRLKEAIELFEEMVS--KDQILPDALTYNALINGFCHGXKV-DRALKIME 339

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M +    P+   Y+ ++  FC++G +  A E+   M  + L PD + Y ++I  FC AG
Sbjct: 340 FMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAG 399

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           R+++A  L K M  + C A+ V ++ +L G+CR G  E A  +L  +  EG     N  +
Sbjct: 400 RVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYEG--VYLNKAS 457

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y  V+   C +G +++A  ++  M   G  P+  T + L+   C  G + +A   +  ++
Sbjct: 458 YRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLL 517

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
             G       ++ LV  + R ++L  A +L   ++
Sbjct: 518 ELGFKPEPNSWALLVELICRERKLLPAFELLDDLV 552


>gi|224141281|ref|XP_002324003.1| predicted protein [Populus trichocarpa]
 gi|222867005|gb|EEF04136.1| predicted protein [Populus trichocarpa]
          Length = 626

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 159/321 (49%), Gaps = 8/321 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G V SV     + N   K+   +    V  +M    + P++  +N +  LFC+ GD+ 
Sbjct: 210 EVGYVPSVIACNYLLNGLLKSNHIHLCWHVYGEMGRVGVIPNSYTFNILTHLFCKDGDID 269

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
             ++ ++ M      PDI+TY ++I G+C  GRL DA  L+++M R     +LV+Y+AL+
Sbjct: 270 KMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGRLSDAFYLYRIMYRRCVLPDLVSYTALM 329

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G+C+ G +  A +LL  M   G   +P+VV+Y ++I  +C +G M E+  +L  M   G
Sbjct: 330 NGLCKEGRVREAHQLLHRMVHRG--LNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNG 387

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+  T   LI+G+  EG L  A  L+ ++   G   S   Y  LV  L    R   A+
Sbjct: 388 IFPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDRPFAAK 447

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVL 419
            L  +M   G  P     + +I  LC G  V +   L  +I     + +++ ++  +  L
Sbjct: 448 TLLERMSQRGYIPHVEIYNKLIESLCKGDCVADALSLKAEI----VVGNINPNLLTYKAL 503

Query: 420 LLGLCRKNHSVEAAKLARFML 440
           +  LCR   S+EA KL   ML
Sbjct: 504 IRCLCRMGRSIEAEKLMEEML 524



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 147/305 (48%), Gaps = 5/305 (1%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           D   D II++ +++ + + G +         +  +   P +I    ++ G   +  +   
Sbjct: 177 DCNWDPIIFDLLLKAYVKAGMIKEGFRTFMQILEVGYVPSVIACNYLLNGLLKSNHIHLC 236

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             ++  M R G   N   ++ L    C+ G +++  + L +ME+EG +  P++VTY ++I
Sbjct: 237 WHVYGEMGRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFE--PDIVTYNTLI 294

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             +CG+G + +A  +   M      P+ V+ + L+ G C EG + EA+QL+ ++V  G  
Sbjct: 295 NGYCGRGRLSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLN 354

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y++L+    +  ++ E++ L  +M+ +G+ PD   C V+I+     G ++    L
Sbjct: 355 PDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNL 414

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
             ++EK G   S+  DI+  L+  LC ++    A  L   M ++         +K++E L
Sbjct: 415 VVELEKFGV--SISPDIYDYLVASLCEEDRPFAAKTLLERMSQRGYIPHVEIYNKLIESL 472

Query: 459 KKSGD 463
            K GD
Sbjct: 473 CK-GD 476



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 153/331 (46%), Gaps = 12/331 (3%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           D +E  +EEG    +     + N  C + RL+ +A ++ R M    + PD + Y  ++  
Sbjct: 273 DFLEKMEEEGFEPDIVTYNTLINGYCGRGRLS-DAFYLYRIMYRRCVLPDLVSYTALMNG 331

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C++G +  A +L+  M    L PD+++Y ++I G+C  G++ ++  L   M  +G   +
Sbjct: 332 LCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFPD 391

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
                 L+ G  + G +  AL L+ E+EK G   SP++  Y  ++   C +     A  +
Sbjct: 392 SFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISPDIYDY--LVASLCEEDRPFAAKTL 449

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L+RM   G  P+    + LI+  C    + +A  L  ++V G    +   Y +L+  L R
Sbjct: 450 LERMSQRGYIPHVEIYNKLIESLCKGDCVADALSLKAEIVVGNINPNLLTYKALIRCLCR 509

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL---GGQVLEGFCLYEDIEKIGFLSS 410
             R  EAEKL  +ML  G++PD   C  MI   C     G+      L+    +I     
Sbjct: 510 MGRSIEAEKLMEEMLHFGLQPDPEICRAMIHGYCREKDAGKAESLLVLFAKEFQI----- 564

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            DS+ +S L+  +C      +  +L   MLK
Sbjct: 565 FDSESYSTLVRIVCEDGDVAKFMELQERMLK 595



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 119/279 (42%), Gaps = 34/279 (12%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ R+  EA  +L +M    L PD + YN +I  +C++G M+ +  L+  M    ++P
Sbjct: 332 LCKEGRV-REAHQLLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFP 390

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D  T   +I+G+   G L  A  L   +++ G + +   Y  L+  +C       A  LL
Sbjct: 391 DSFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDRPFAAKTLL 450

Query: 258 GEMEKEG-----------------GDC----------------SPNVVTYTSVIQIFCGK 284
             M + G                 GDC                +PN++TY ++I+  C  
Sbjct: 451 ERMSQRGYIPHVEIYNKLIESLCKGDCVADALSLKAEIVVGNINPNLLTYKALIRCLCRM 510

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G   EA  +++ M   G  P+      +I G+C E +  +A  L+        +     Y
Sbjct: 511 GRSIEAEKLMEEMLHFGLQPDPEICRAMIHGYCREKDAGKAESLLVLFAKEFQIFDSESY 570

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           S+LV  +     + +  +L  +ML  G  P+ L C  MI
Sbjct: 571 STLVRIVCEDGDVAKFMELQERMLKVGFAPNSLTCKYMI 609



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 106/219 (48%), Gaps = 22/219 (10%)

Query: 116 VVEAYKEEGCVVS-----VKMMK------------VIFNLCEKARLANEAMWVLRKMPEF 158
           +++ Y++EG ++S     V++ K            ++ +LCE+ R    A  +L +M + 
Sbjct: 398 LIQGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDR-PFAAKTLLERMSQR 456

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIKGFCNAGRLED 217
              P   IYN +I   C KGD +A    +K   ++ ++ P+++TY ++I+  C  GR  +
Sbjct: 457 GYIPHVEIYNKLIESLC-KGDCVADALSLKAEIVVGNINPNLLTYKALIRCLCRMGRSIE 515

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  L + M   G   +     A++ G CR     +A  LL    KE         +Y+++
Sbjct: 516 AEKLMEEMLHFGLQPDPEICRAMIHGYCREKDAGKAESLLVLFAKEFQIFDSE--SYSTL 573

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           ++I C  G + + + + +RM  +G APN +T   +I G 
Sbjct: 574 VRIVCEDGDVAKFMELQERMLKVGFAPNSLTCKYMIDGL 612


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 160/336 (47%), Gaps = 35/336 (10%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+ ++YN +I   C+ G++  A EL+  M    L  D++TY +++ G C +GR  DA  +
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARM 233

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M +     ++V ++AL+D   + G+++ A EL  EM +   D  PN VTY S+I   
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD--PNNVTYNSIINGL 291

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G + +A    D M + GC PN VT +TLI GFC    +DE  +L  ++   G  +  
Sbjct: 292 CMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADI 351

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV--------- 392
             Y++L+    +  +L+ A  +F  M++  V PD +   +++  LC+ G++         
Sbjct: 352 FTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDD 411

Query: 393 ----------------LEGFCLYEDIEKIGFL--------SSVDSDIHSVLLLGLCRKNH 428
                           + G C  + +EK   L           D+  +++++LGLC+   
Sbjct: 412 MRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGP 471

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464
             EA +L R M ++ I  Q    D  +E    S  E
Sbjct: 472 RREADELIRRMKEEGIICQMNAEDDHLEEHSSSNKE 507



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 164/340 (48%), Gaps = 8/340 (2%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           R +   ++  ++V +      V   +++    NL    R     ++  +KM  + +  D 
Sbjct: 51  RFEDAFALFFEMVHSQPLPSIVDFTRLLTATANL----RRYETVIYFSQKMELYGISHDL 106

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
             +  +I  FC    +  A  ++  M  +   P I+T+ S++ GFC   R+ DA  L  +
Sbjct: 107 YSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVIL 166

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M + G   N+V Y+ L+DG+C+ G +  ALELL EMEK+G     +VVTY +++   C  
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKG--LGADVVTYNTLLTGLCYS 224

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G   +A  +L  M      P+ VT + LI  F  +GNLDEA +L  +++      +   Y
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +S++  L    RL +A+K F  M + G  P+ +  + +I   C    V EG  L++ +  
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSC 344

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            GF  + D   ++ L+ G C+      A  +  +M+ +R+
Sbjct: 345 EGF--NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRV 382



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 162/330 (49%), Gaps = 4/330 (1%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARL 144
           ++S Y  +  +YN   +        +I ++++   +++G    V     +   LC   R 
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRW 227

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           ++ A  +LR M +  + PD + +  +I +F ++G++  A EL K M    + P+ +TY S
Sbjct: 228 SDAAR-MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNS 286

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C  GRL DA   F +M   GC  N+V Y+ L+ G C+   ++  ++L   M  EG
Sbjct: 287 IINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEG 346

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
            +   ++ TY ++I  +C  G ++ AL I   M +    P+ +T   L+ G CV G ++ 
Sbjct: 347 FN--ADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIES 404

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A    D +           Y+ ++  L +  ++++A +LF ++   GVKPD    ++MI 
Sbjct: 405 ALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMIL 464

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            LC  G   E   L   +++ G +  ++++
Sbjct: 465 GLCKNGPRREADELIRRMKEEGIICQMNAE 494



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 122/272 (44%), Gaps = 43/272 (15%)

Query: 208 GFCNAGRLEDACGLF-----------------------------------KVMKRHGCAA 232
           GF ++ R EDA  LF                                   + M+ +G + 
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISH 104

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L +++ L+   CR   +  AL +LG+M K G +  P++VT+ S++  FC    + +A  
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYE--PSIVTFGSLLHGFCLVNRIGDAFS 162

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           ++  M   G  PN V  +TLI G C  G L+ A +L++++   G  +    Y++L+  L 
Sbjct: 163 LVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLC 222

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
            + R  +A ++   M+   + PD +  + +I      G + E   LY+++ +    SSVD
Sbjct: 223 YSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQ----SSVD 278

Query: 413 SD--IHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +   ++ ++ GLC      +A K    M  K
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMASK 310


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 145/288 (50%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KV+  LC  +++   A  +  +M    L  D   Y  ++  FC+ G +  A +    M  
Sbjct: 488 KVLNYLCNASKM-ELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   P+++TY ++I  +  A ++  A  LF+ M   GC  N+V YSAL+DG C+ G +E+
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEK 606

Query: 253 ALELLGEM------------EKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A ++   M             K+  D S  PNVVTY +++  FC    ++EA  +LD M 
Sbjct: 607 ACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMS 666

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             GC PN++    LI G C  G LDEA ++  ++   G  ++   YSSL+    + KR  
Sbjct: 667 MEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQD 726

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ SKML +   P+ +  + MI  LC  G+  E + L + +E+ G
Sbjct: 727 LASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 774



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 183/388 (47%), Gaps = 23/388 (5%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI 106
           +K L   + KL  + VIEVL     ++    I FF+WA  Q  Y+H++ +YN   ++   
Sbjct: 120 QKFLRQFREKLSESLVIEVLR--LIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVR 177

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
             +  +  + ++  +++   V  + + V+     +    + A+  L ++ +F  RP    
Sbjct: 178 DDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRST 237

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +I+ F +   + +A  + + M L +L  D  T        C  G+  +A  L   ++
Sbjct: 238 YNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTL---VE 294

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
                 + V Y+ L+ G+C     E A++ L  M      C PNVVTY++++   CG  +
Sbjct: 295 TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRM--RATSCLPNVVTYSTLL---CG-CL 348

Query: 287 MKEALG----ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            K+ LG    +L+ M   GC P+    ++L+  +C  G+   AY+L+ K+V  G +    
Sbjct: 349 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYV 408

Query: 343 CYSSLVVELVRTKR------LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
            Y+ L+  +   K       L  AEK +S+MLA+GV  + +  S   R LC  G+  + F
Sbjct: 409 VYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAF 468

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            +  ++   GF+   D+  +S +L  LC
Sbjct: 469 SVIREMIGQGFIP--DTSTYSKVLNYLC 494



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 166/351 (47%), Gaps = 15/351 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+  R+++   ++    +A   EGC  +  +   + + LC+  +L +EA  V  +M E  
Sbjct: 650 CKSHRVEEARKLL----DAMSMEGCEPNQIVYDALIDGLCKVGKL-DEAQEVKTEMSEHG 704

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
                  Y+++I  + +      A +++  M      P+++ Y  MI G C  G+ ++A 
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 764

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L ++M+  GC  N+V Y+A++DG   +G +E  LELL  M  +G   +PN VTY  +I 
Sbjct: 765 KLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKG--VAPNYVTYRVLID 822

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G +  A  +L+ M+      +      +I+GF  E    E+  L+D++    +  
Sbjct: 823 HCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDEIGQDDTAP 880

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKM--LASGVKPDGLACSVMIRELCLGGQVLEGFC 397
               Y  L+  L++ +RL+ A +L  ++   ++ +       + +I  LCL  +V   F 
Sbjct: 881 FLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQ 940

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQ 447
           L+ ++ K G +  + S     L+ GL R +   EA  L  F+    I W++
Sbjct: 941 LFSEMTKKGVIPEMQS--FCSLIKGLFRNSKISEALLLLDFISHMEIQWIE 989



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 27/354 (7%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           CE S  ++     +D +   +   C+ +V     +   C   +       VL  M     
Sbjct: 313 CEASLFEE----AMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGC 368

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC------NAGR 214
            P   I+N+++  +C  GD   A +L+K M      P  + Y  +I   C      N   
Sbjct: 369 YPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDL 428

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L+ A   +  M   G   N +  S+    +C  G  E+A  ++ EM  +G    P+  TY
Sbjct: 429 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQG--FIPDTSTY 486

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + V+   C    M+ A  + + M+  G   +  T + ++  FC  G +++A +  +++  
Sbjct: 487 SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV-- 392
            G   +   Y++L+   ++ K++  A +LF  ML+ G  P+ +  S +I   C  GQV  
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEK 606

Query: 393 ----LEGFCLYEDIEKIG-FLSSVDSD-------IHSVLLLGLCRKNHSVEAAK 434
                E  C  +D+  +  +    D +        +  LL G C K+H VE A+
Sbjct: 607 ACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFC-KSHRVEEAR 659



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 110/251 (43%), Gaps = 8/251 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PDT+ Y  +I   CE      A + +  M      P+++TY +++ G  N  +L     +
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRV 359

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
             +M   GC  +   +++L+   C  G    A +LL +M K G    P  V Y  +I   
Sbjct: 360 LNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH--MPGYVVYNILIGSI 417

Query: 282 CGK------GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           CG        ++  A      M A G   N++ +S+  +  C  G  ++A+ +I +++  
Sbjct: 418 CGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQ 477

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G +     YS ++  L    +++ A  LF +M   G+  D    ++M+   C  G + + 
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 396 FCLYEDIEKIG 406
              + ++ ++G
Sbjct: 538 RKWFNEMREVG 548


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 185/408 (45%), Gaps = 41/408 (10%)

Query: 73  QSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132
           + ++ +RFF WA  Q  Y H    +    E+     +   I  V    K+ G +++    
Sbjct: 127 KPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAA 186

Query: 133 KVIFNLCEKARLANEAMWVLRKMPE-----------------------------FDLR-- 161
             +        L  E +WV R+M E                             F++   
Sbjct: 187 NSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDG 246

Query: 162 ----PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
               PDT+ YN +I+ +C+ G +  A E  + M + ++ PD ITY+++I+  C + R  D
Sbjct: 247 GKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQA-CYSERDFD 305

Query: 218 AC-GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            C  L+  M+  G      +YS ++ G+C+      A  +   M ++G  C  NV  YT+
Sbjct: 306 TCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKG--CRANVAIYTA 363

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I  +   G M+EA+ + +RM+  G  P+ VT S L+ G C  G LD+  +L D     G
Sbjct: 364 LIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKG 423

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
              +   Y+SL+  L +  R+++AE LF +M   G   D    + +I  L   G++ +  
Sbjct: 424 VAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQAL 483

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            L+  +E+ G   +V +   ++L+ GL +++ + EA K    M+ K I
Sbjct: 484 ALFGRMEEEGCDQTVYT--FTILIDGLFKEHKNEEAIKFWDKMIDKGI 529



 Score = 45.4 bits (106), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 103/300 (34%), Gaps = 91/300 (30%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V E   ++GC  +V +   + +   K     EAM +  +M      PD + Y+ ++   C
Sbjct: 345 VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLC 404

Query: 176 EKGDMIAADELM-----KGMGLIDLYPDIITYVSMIKGFCNAGRLED------------- 217
           + G +    EL      KG+ +  ++     Y S+I G   AGR+ED             
Sbjct: 405 KSGRLDDGMELFDFCRNKGVAINAMF-----YASLIDGLGKAGRIEDAENLFEEMSEKGC 459

Query: 218 ----------------------ACGLFKVMKRHGCAANLVAYSALLDGI----------- 244
                                 A  LF  M+  GC   +  ++ L+DG+           
Sbjct: 460 ARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIK 519

Query: 245 ------------------------CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
                                   C  G + RA ++L ++   G    P    +  +I  
Sbjct: 520 FWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMG--IIPE-TAFEDMINT 576

Query: 281 FCGKGMMKEAL----GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
            C    +KEA     GI+DR   +   P R+  + LI      GN D   +L+   +  G
Sbjct: 577 LCKAQRIKEACKLADGIVDRGREI---PGRIR-TVLINALRKAGNSDLVIKLMHSKIGIG 632


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 151/324 (46%), Gaps = 39/324 (12%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           KMP      D + Y  +I  FCE G +  A EL + M      PD+ T+ +++KG C+AG
Sbjct: 189 KMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMT----QPDMYTHAALVKGLCDAG 244

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--------- 264
           R E+   + + MK  G      AY+AL+D  CR    E A ++L EM   G         
Sbjct: 245 RGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCT 304

Query: 265 ------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
                                     C PNV TY +++Q FC  G + +A+ +LD+M   
Sbjct: 305 IVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMREC 364

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P+ VT + LI+G C++G++  A++L+  +   G  +    Y+ L+  L +T ++ EA
Sbjct: 365 GVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEA 424

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             LF  +   G++P+ +  + +I  LC  G+        E++   G+  + D+  +S  +
Sbjct: 425 CSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGY--APDTYTYSPFI 482

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
             LC+   S E       ML+K +
Sbjct: 483 ENLCKTKGSQEGLFFIDEMLQKDV 506



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 2/271 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++  KE G   + +    + +L  + + A EA  +L +M +  L P  +    V+  +C
Sbjct: 252 MLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYC 311

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            +G M  A  + + M      P++ TY ++++GFCNAG++  A  L   M+  G   ++V
Sbjct: 312 REGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVV 371

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L+ G C  G +  A  LL  M  EG   + +  TY  +I   C  G + EA  + D
Sbjct: 372 TYNLLIRGQCIDGHIGSAFRLLRLM--EGNGLAADQYTYNVLIDALCKTGKVDEACSLFD 429

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            +E  G  PN VT +T+I G C  G  D A   ++ +++ G       YS  +  L +TK
Sbjct: 430 GLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTK 489

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
             +E      +ML   VKP  +  +++I  L
Sbjct: 490 GSQEGLFFIDEMLQKDVKPSTVNYTIVINRL 520



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 148/302 (49%), Gaps = 9/302 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC +A L   A   L  M     RPD   +N++I  +C    +  A +L   M   
Sbjct: 135 LIRALCRRADL-RHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFR 193

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               D ++Y ++I+GFC AGR+++A  LF+ M +     ++  ++AL+ G+C  G  E  
Sbjct: 194 GFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ----PDMYTHAALVKGLCDAGRGEEG 249

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L +L +M++ G    P    Y +++ ++C +   +EA  IL+ M   G  P  VT + ++
Sbjct: 250 LCMLQKMKELGW--RPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVV 307

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             +C EG +  A ++ + +   G   +   Y+++V       ++ +A  L  +M   GV+
Sbjct: 308 NAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVE 367

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  +++IR  C+ G +   F L   +E  G   + D   ++VL+  LC+     EA 
Sbjct: 368 PDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGL--AADQYTYNVLIDALCKTGKVDEAC 425

Query: 434 KL 435
            L
Sbjct: 426 SL 427



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 138/280 (49%), Gaps = 12/280 (4%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P    YN +IR  C + D+  A   +  M      PD  T+ S+I G+C   +LE A  L
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDL 186

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  M   G + + V+Y+AL++G C  G ++ ALEL  EM +      P++ T+ ++++  
Sbjct: 187 FCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ------PDMYTHAALVKGL 240

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G  +E L +L +M+ LG  P     + L+  +C E   +EA ++++++   G +   
Sbjct: 241 CDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCV 300

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
              + +V    R  R+  A ++F  M   G +P+    + +++  C  G+V +   L + 
Sbjct: 301 VTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQ 360

Query: 402 IEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFM 439
           + + G    V+ D+  +++L+ G C   H   A +L R M
Sbjct: 361 MRECG----VEPDVVTYNLLIRGQCIDGHIGSAFRLLRLM 396



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 148/315 (46%), Gaps = 7/315 (2%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CVV+  +  V+   C + R++  A+ V   M      P+   YN +++ FC  G +  A 
Sbjct: 299 CVVTCTI--VVNAYCREGRMSG-AVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAM 355

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L+  M    + PD++TY  +I+G C  G +  A  L ++M+ +G AA+   Y+ L+D +
Sbjct: 356 ALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDAL 415

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G ++ A  L   +E  G    PN VT+ +VI   C  G    A   L+ M + G AP
Sbjct: 416 CKTGKVDEACSLFDGLEYRG--IRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAP 473

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           +  T S  I+  C      E    ID+++      S   Y+ ++  L   +    A +++
Sbjct: 474 DTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIW 533

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            +M++ G  PD +  +  +R  C  G++ E   +  +++K   +  VD+  ++ L+ G  
Sbjct: 534 GQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTI--VDAMAYNTLIDGHT 591

Query: 425 RKNHSVEAAKLARFM 439
               +  A  + + M
Sbjct: 592 SIGQTDRAVTILKHM 606



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V E+ + +GC  +V     I      A    +AM +L +M E  + PD + YN +IR 
Sbjct: 320 VRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRG 379

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G + +A  L++ M    L  D  TY  +I   C  G++++AC LF  ++  G   N
Sbjct: 380 QCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPN 439

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            V ++ +++G+C+ G  + A   L  M   G   +P+  TY+  I+  C     +E L  
Sbjct: 440 SVTFNTVINGLCKAGKFDVACTFLENMISAG--YAPDTYTYSPFIENLCKTKGSQEGLFF 497

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           +D M      P+ V  + +I     E N   A ++  ++V+ G       Y++ V     
Sbjct: 498 IDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCN 557

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
             RL EAE + ++M       D +A + +I
Sbjct: 558 EGRLDEAENVVTEMKKCRTIVDAMAYNTLI 587



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 139/322 (43%), Gaps = 43/322 (13%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI-RLFCEKGDMIAADELMKGMGLI 193
           I NLC K + + E ++ + +M + D++P T+ Y  VI RLF E+   +A   +   M   
Sbjct: 482 IENLC-KTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLAT-RIWGQMVSQ 539

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD++TY + ++ +CN GRL++A  +   MK+     + +AY+ L+DG   +G  +RA
Sbjct: 540 GCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRA 599

Query: 254 LELLGEMEKEGGDCSPNVVTY--------------------TSVIQIFCGKGMMKEALGI 293
           + +L  M   G    PN  T+                    TSV +       + +   +
Sbjct: 600 VTILKHM--TGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTI----ELADVFEL 653

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
            + M+      +  T  ++++GF  E  LDE   L+  +       +   Y++LV    +
Sbjct: 654 FELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCK 713

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS--- 410
            +   +A  L   M+  G  P+ +    ++  L   GQ         D  K  F SS   
Sbjct: 714 LRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQA--------DRAKEIFRSSRWK 765

Query: 411 ---VDSDIHSVLLLGLCRKNHS 429
               D  +  V++ G  RK H+
Sbjct: 766 EYNTDEIVWKVIIDGFIRKGHA 787



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
           AP   T + LI+  C   +L  A + +  +V  G       ++SL++   RT++L+ A  
Sbjct: 126 APTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHD 185

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           LF KM   G   D ++ + +I   C  G++ E   L+ +      ++  D   H+ L+ G
Sbjct: 186 LFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFRE------MTQPDMYTHAALVKG 239

Query: 423 LC 424
           LC
Sbjct: 240 LC 241



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 73/170 (42%), Gaps = 8/170 (4%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + ++ E  K+     S +    I     + R  +E   ++  M E +L  +  IYN ++ 
Sbjct: 650 VFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVN 709

Query: 173 LFCE---KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
            FC+     D  A    M G G +   P++I Y  ++ G    G+ + A  +F+  +   
Sbjct: 710 CFCKLRMYSDAWALLCSMIGHGFL---PNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKE 766

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
              + + +  ++DG  R G  +   +++  +E+    C P+  TY  + +
Sbjct: 767 YNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQM--KCKPSDETYAMLTE 814


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 160/310 (51%), Gaps = 11/310 (3%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I  LC  +R+  +A  V   M +    P+ I YN ++   C  G M  A  L + M    
Sbjct: 57  ISGLCRASRIG-DAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAG 115

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             PD++TY +++ GFC  G+L++A  +F    + G   ++V Y+AL++G C+   ++ A 
Sbjct: 116 YSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQ 175

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA-LGILDRMEALGCAPNRVTISTLI 313
            +L  M  E     P+VVTY S++   C  G + EA + I+D+    G +PN +T STLI
Sbjct: 176 RILQRMVSE--SLVPDVVTYNSLVNGLCKNGRVDEARMLIVDK----GFSPNVITYSTLI 229

Query: 314 KGFCVE-GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
            G C E   L+ A QL++K+V  G       Y++L+  L R + + EA KLF  +L  G 
Sbjct: 230 SGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGY 289

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           +P+    +++I  L    +V E F L+  + K G     D+  ++V + GLC+     +A
Sbjct: 290 EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGL--EPDAITYTVFIDGLCKAGRVEDA 347

Query: 433 AKLARFMLKK 442
             + + M +K
Sbjct: 348 LLMLKDMDEK 357



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 158/305 (51%), Gaps = 10/305 (3%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D   +N  I   C    +  A  +  GM     +P+ ITY +++ G CN GR+ DA  L+
Sbjct: 49  DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALY 108

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + M + G + ++V Y+ LL G C++G ++ AL++     K G    P+VVTY ++I  FC
Sbjct: 109 ERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRG--FVPDVVTYNALINGFC 166

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI-DKVVAGGSVSSG 341
               + EA  IL RM +    P+ VT ++L+ G C  G +DEA  LI DK  +   ++  
Sbjct: 167 KADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVIT-- 224

Query: 342 GCYSSLVVELVRT-KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
             YS+L+  L R  +RL+ A +L  KM+ +G KPD ++ + +I  L     V E   L+ 
Sbjct: 225 --YSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFG 282

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
            + + G+   V +  +++L+ GL +++   EA +L   ++K  +          ++ L K
Sbjct: 283 SVLRQGYEPEVPT--YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCK 340

Query: 461 SGDEE 465
           +G  E
Sbjct: 341 AGRVE 345



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/269 (33%), Positives = 135/269 (50%), Gaps = 11/269 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+  R++    ++ D+     E+GCV  V     + N LC++ R+ +EA  +L  M    
Sbjct: 339 CKAGRVEDALLMLKDM----DEKGCVPDVVSHNAVINGLCKEKRV-DEAEVLLSGMEAKG 393

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA---GRLE 216
             P+ I +N +I   C  G    A    K M    + P ++TY  ++ G C A   GR++
Sbjct: 394 CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIK 453

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           +A  LF  M   G   ++V YSAL+DG+ + G ++ A  LLG ME +G  C PNV TY S
Sbjct: 454 EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKG--CIPNVYTYNS 511

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   CG   + EAL +   M   GC P+ +T  T+I   C +  +D+A  L D  +  G
Sbjct: 512 LISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAG 571

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V + G Y SL+  L    R+ EA KL  
Sbjct: 572 VVPTSGMYFSLIDGLCAVARVDEALKLLQ 600



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 173/350 (49%), Gaps = 13/350 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+  R+ +   +I+D  + +       S     +I  LC + R    A  +L KM
Sbjct: 196 LVNGLCKNGRVDEARMLIVD--KGFSPNVITYST----LISGLCRELRRLESARQLLEKM 249

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
                +PD + YN +I     +  +  A +L   +      P++ TY  +I G     R+
Sbjct: 250 VLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRV 309

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
            +A  LF  + +HG   + + Y+  +DG+C+ G +E AL +L +M+++G  C P+VV++ 
Sbjct: 310 NEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG--CVPDVVSHN 367

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           +VI   C +  + EA  +L  MEA GC+PN ++ +TLI G C  G   +A     +++  
Sbjct: 368 AVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKR 427

Query: 336 GSVSSGGCYSSLVVELVRTK---RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           G   +   Y+ LV  L + +   R+KEA  LF  M+  G  PD +  S +I  L   G++
Sbjct: 428 GVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKL 487

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +   L   +E  G + +V +  ++ L+ GLC  +   EA +L   M++K
Sbjct: 488 DDARRLLGAMEAKGCIPNVYT--YNSLISGLCGLDKVDEALELFVAMVEK 535



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 182/398 (45%), Gaps = 50/398 (12%)

Query: 86  LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141
           +++ Y      YN      C++ ++ +   I    V+     G V  V     + N   K
Sbjct: 112 IKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVK----RGFVPDVVTYNALINGFCK 167

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           A   +EA  +L++M    L PD + YN+++   C+ G +  A  L+   G     P++IT
Sbjct: 168 ADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKG---FSPNVIT 224

Query: 202 YVSMIKGFCNA-GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           Y ++I G C    RLE A  L + M  +GC  ++V+Y+AL+ G+ R   +  AL+L G +
Sbjct: 225 YSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSV 284

Query: 261 EKEGGD---------------------------------CSPNVVTYTSVIQIFCGKGMM 287
            ++G +                                   P+ +TYT  I   C  G +
Sbjct: 285 LRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRV 344

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           ++AL +L  M+  GC P+ V+ + +I G C E  +DEA  L+  + A G   +   +++L
Sbjct: 345 EDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTL 404

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG---GQVLEGFCLYEDIEK 404
           +    R  + K+A   F +ML  GVKP  +  ++++  LC     G++ E   L++ + +
Sbjct: 405 ICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIE 464

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            G +  V +  +S L+ GL +     +A +L   M  K
Sbjct: 465 KGRVPDVVT--YSALIDGLGKAGKLDDARRLLGAMEAK 500



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 6/269 (2%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I  LC+  R+  +A+ +L+ M E    PD + +N VI   C++  +  A+ L+ GM    
Sbjct: 335 IDGLCKAGRV-EDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 393

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---GSME 251
             P+ I++ ++I G C AG+ + A   FK M + G    +V Y+ L+DG+C+    G ++
Sbjct: 394 CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIK 453

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
            A+ L   M ++G    P+VVTY+++I      G + +A  +L  MEA GC PN  T ++
Sbjct: 454 EAITLFDAMIEKGR--VPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNS 511

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           LI G C    +DEA +L   +V  G V     Y +++  L + + + +A  LF   L +G
Sbjct: 512 LISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAG 571

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           V P       +I  LC   +V E   L +
Sbjct: 572 VVPTSGMYFSLIDGLCAVARVDEALKLLQ 600



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 9/244 (3%)

Query: 192 LIDLY-PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
           L+ +Y PD  T   +++    +G++E A    + +   G   ++  ++  + G+CR   +
Sbjct: 8   LVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASRI 66

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
             A  +   M K G    PN +TY +++   C  G M +A  + +RM   G +P+ VT +
Sbjct: 67  GDAQTVFDGMRKHG--FWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYN 124

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           TL+ GFC  G LDEA ++ D  V  G V     Y++L+    +  +L EA+++  +M++ 
Sbjct: 125 TLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE 184

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
            + PD +  + ++  LC  G+V E   L  D    GF  +V +  +S L+ GLCR+   +
Sbjct: 185 SLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVIT--YSTLISGLCRELRRL 239

Query: 431 EAAK 434
           E+A+
Sbjct: 240 ESAR 243



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 99  RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           +A +  RIK+     I + +A  E+G V  V     + +   KA   ++A  +L  M   
Sbjct: 445 KARQEGRIKE----AITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAK 500

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
              P+   YN++I   C    +  A EL   M      PD ITY ++I   C    ++ A
Sbjct: 501 GCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKA 560

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
             LF      G       Y +L+DG+C +  ++ AL+LL
Sbjct: 561 LALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 146/251 (58%), Gaps = 11/251 (4%)

Query: 167 YNNVIRLFCEKGDMIAA----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           YN ++ +F +   ++ A    D+++K  G++   PD+ TY ++I+G+C  G +E+A  +F
Sbjct: 220 YNAILGVFVKANRIMLARAVFDQIVK-EGVVK--PDVSTYTTIIRGYCKMGMIENAKNVF 276

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   GC  NLV Y+ +++G C+ G ME A++++ +M  E  DC P+ VTYT++I  +C
Sbjct: 277 DEM---GCKPNLVTYNTMINGFCKKGLMESAMKIVDQM-TETEDCMPDTVTYTTLIDGYC 332

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            +G ++EA+  ++ M +  C PN +T + +I G C+ GN+DEA +++ ++   G   +  
Sbjct: 333 KRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVA 392

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            ++S++  L    +L +A +   +M+  G++ D  A  V++ E C  G+  +   L +++
Sbjct: 393 THTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEM 452

Query: 403 EKIGFLSSVDS 413
           +  G   SV S
Sbjct: 453 KSRGINPSVSS 463



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 142/276 (51%), Gaps = 11/276 (3%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++PD   Y  +IR +C+ G +  A  +   MG     P+++TY +MI GFC  G +E A 
Sbjct: 249 VKPDVSTYTTIIRGYCKMGMIENAKNVFDEMGC---KPNLVTYNTMINGFCKKGLMESAM 305

Query: 220 GLFKVM-KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
            +   M +   C  + V Y+ L+DG C+ G +E A++ + EM     +C PNV+TY ++I
Sbjct: 306 KIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSR--NCEPNVLTYNAII 363

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C  G + EA  ++ RM   G   N  T ++++KG CV G LD+A + + ++V  G  
Sbjct: 364 YGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGME 423

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
           +    Y  +V E  +  +  +A  L  +M + G+ P   + + + R L   G+  +   +
Sbjct: 424 ADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLI 483

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCR---KNHSVE 431
              ++++G   +  S  +S ++ GLC+   + H VE
Sbjct: 484 LRQMKQLGCTPNFLS--YSTVIDGLCKAKGRMHEVE 517



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 136/278 (48%), Gaps = 8/278 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRK 154
           M N  C+   ++    I+  + E    E C+  +V    +I   C++  L  EAM  + +
Sbjct: 291 MINGFCKKGLMESAMKIVDQMTET---EDCMPDTVTYTTLIDGYCKRGEL-EEAMKYMEE 346

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M   +  P+ + YN +I   C  G++  A  +M  M L  L  ++ T+ S++KG C  G+
Sbjct: 347 MVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGK 406

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L+DA    K M   G  A+  AY  +++  C++G  + A+ LL EM+  G   +P+V ++
Sbjct: 407 LDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRG--INPSVSSF 464

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC-VEGNLDEAYQLIDKVV 333
            +V +I    G   +A  IL +M+ LGC PN ++ ST+I G C  +G + E  + +D + 
Sbjct: 465 NAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMC 524

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
             G       YS LV           A +LF +ML  G
Sbjct: 525 RNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMG 562



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 7/221 (3%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
            +K + + G +  A   F   K+      L +Y+A+L    +   +  A  +  ++ KEG
Sbjct: 188 FVKAYGDRGDIRGAIHWFHRAKKMESGRCLFSYNAILGVFVKANRIMLARAVFDQIVKEG 247

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               P+V TYT++I+ +C  GM++ A  + D M   GC PN VT +T+I GFC +G ++ 
Sbjct: 248 V-VKPDVSTYTTIIRGYCKMGMIENAKNVFDEM---GCKPNLVTYNTMINGFCKKGLMES 303

Query: 325 AYQLIDKVV-AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           A +++D++      +     Y++L+    +   L+EA K   +M++   +P+ L  + +I
Sbjct: 304 AMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAII 363

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
             LCL G V E   +   +   G   +V +  H+ +L GLC
Sbjct: 364 YGLCLNGNVDEAKRMMTRMRLNGLKDNVAT--HTSILKGLC 402


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 153/299 (51%), Gaps = 6/299 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++V     +GC  ++    ++ +  C+K +L  EA  +LR+M       +T+ YN +I 
Sbjct: 402 LELVNDMDAKGCKPNLNTYTILIDGFCKKGQL-EEAGLILREMLTKGFSLNTVGYNALIS 460

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C+ G +  A ++   M      PDI T+ S+I G C    +EDA  L++ M   G  A
Sbjct: 461 ALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIA 520

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N V ++ L+    R G ++ AL+L+ +M   G  C  + +TY  +I+  C  G +++ LG
Sbjct: 521 NSVTFNTLIHAFLRRGEIQEALKLVNDMLFRG--CPLDEITYNGLIKALCKTGAVEKGLG 578

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + + M   G  P+ +T + LI GFC  G +  A + +  ++  G       Y+SL+  L 
Sbjct: 579 LFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLC 638

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG-FCLYEDIEKIGFLSS 410
           +  R++EA  LF K+ A G++PD +  + +I  LC  G   +  F LY  +E  GF+ +
Sbjct: 639 KRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVEN-GFVPN 696



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 175/394 (44%), Gaps = 10/394 (2%)

Query: 71  PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVK 130
           P   +  +  F WA  Q  Y HS  +Y    +         +I  ++   KEEG V    
Sbjct: 81  PLDVETSMEIFKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRES 140

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           +  +I     +A L  +A  +L  M   +   P    YN V+ +         A  +   
Sbjct: 141 LFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYD 200

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M    + P+  T+  ++K  C    +++AC L + M +HGC  N + Y  L+D + +   
Sbjct: 201 MLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDR 260

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           ++ AL+LL EM   G  C P+V T+ +VI  FC    + E   ++DRM   G  PN +T 
Sbjct: 261 VDEALKLLEEMFLMG--CPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTY 318

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL-FSKML 368
             L+ G C    +DEA  L+ KV     V     +++LV   VR  RL EA    + KM+
Sbjct: 319 GYLMHGLCKTCRIDEAQALLSKVPGPNVVH----FNTLVNGFVRNGRLNEATAFVYDKMI 374

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
            +G  PD    S ++  LC  G       L  D++  G   ++++  +++L+ G C+K  
Sbjct: 375 NNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNT--YTILIDGFCKKGQ 432

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
             EA  + R ML K   L     + ++  L K G
Sbjct: 433 LEEAGLILREMLTKGFSLNTVGYNALISALCKHG 466



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 153/306 (50%), Gaps = 10/306 (3%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY- 196
           LC+  R+ +EA  +L K+P     P+ + +N ++  F   G +  A   +    + + Y 
Sbjct: 325 LCKTCRI-DEAQALLSKVPG----PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYV 379

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+ T+ +++ G C  G    A  L   M   GC  NL  Y+ L+DG C+ G +E A  +
Sbjct: 380 PDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLI 439

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EM  +G   S N V Y ++I   C  G + EAL +   M + GC P+  T ++LI G 
Sbjct: 440 LREMLTKG--FSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGL 497

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    +++A  L   +V  G +++   +++L+   +R   ++EA KL + ML  G   D 
Sbjct: 498 CRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDE 557

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I+ LC  G V +G  L+E++ + G   S+ +   ++L+ G C       A +  
Sbjct: 558 ITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIIT--CNILINGFCTAGKVHNALEFM 615

Query: 437 RFMLKK 442
           R M+ +
Sbjct: 616 RDMIHR 621



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 169/344 (49%), Gaps = 7/344 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           + GCV +  + + + +   K    +EA+ +L +M      PD   +N VI  FC    ++
Sbjct: 238 KHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVL 297

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
              +L+  M L    P+ +TY  ++ G C   R+++A  L   +       N+V ++ L+
Sbjct: 298 EGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVP----GPNVVHFNTLV 353

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G  R G +  A   + +     G   P+V T+++++   C KG+   AL +++ M+A G
Sbjct: 354 NGFVRNGRLNEATAFVYDKMINNGYV-PDVFTFSTLVNGLCKKGLFGSALELVNDMDAKG 412

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C PN  T + LI GFC +G L+EA  ++ +++  G   +   Y++L+  L +  ++ EA 
Sbjct: 413 CKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEAL 472

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
            +F +M + G KPD    + +I  LC   ++ +   LY D+   G ++  +S   + L+ 
Sbjct: 473 DMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIA--NSVTFNTLIH 530

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
              R+    EA KL   ML +   L     + +++ L K+G  E
Sbjct: 531 AFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVE 574



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 4/236 (1%)

Query: 114 IDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +D+      +GC   +     +IF LC    +  +A+ + R M    +  +++ +N +I 
Sbjct: 472 LDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEM-EDALALYRDMVLEGVIANSVTFNTLIH 530

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            F  +G++  A +L+  M       D ITY  +IK  C  G +E   GLF+ M R G   
Sbjct: 531 AFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTP 590

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +++  + L++G C  G +  ALE + +M   G   SP++VTY S+I   C +G ++EAL 
Sbjct: 591 SIITCNILINGFCTAGKVHNALEFMRDMIHRG--FSPDIVTYNSLINGLCKRGRIQEALN 648

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           + ++++A G  P+ +T +TLI   C EG  D+A  L+ + V  G V +   ++ LV
Sbjct: 649 LFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILV 704



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 14/165 (8%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLID------LYPDIITYVSMIKGFCNAGRLE 216
           D I YN +I+  C+ G       + KG+GL +      L P IIT   +I GFC AG++ 
Sbjct: 556 DEITYNGLIKALCKTG------AVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVH 609

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           +A    + M   G + ++V Y++L++G+C+ G ++ AL L  +++ EG    P+ +TY +
Sbjct: 610 NALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEG--IQPDSITYNT 667

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           +I   C +G   +A  +L R    G  PN VT + L+  F  + N
Sbjct: 668 LICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQSN 712


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 143/288 (49%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LCE  ++  +A  + ++M    + PD   Y  +I  FC+ G +  A      M  
Sbjct: 460 KVITFLCEAMKV-EKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMES 518

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   P ++TY +++  +    ++  A  +F  M   GCA N + YSAL+DG+C+ G  ++
Sbjct: 519 VGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQK 578

Query: 253 ALELLGEM-------------EKEGGDC-SPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A E+  +M             E E  D  +PNVVTY ++I   C    + +A  +LD M 
Sbjct: 579 ACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMS 638

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           + GC PN +    LI GFC  G LD A ++  ++   G + +   Y+SL+  + + +RL 
Sbjct: 639 SNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLD 698

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ S+ML S   P+ +  + MI  LC  G+  +   L   +EK G
Sbjct: 699 LAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRG 746



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 163/350 (46%), Gaps = 41/350 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KA    +A  +L  M      P+ IIY+ +I  FC+ G +  A E+   M   
Sbjct: 617 LIDGLC-KAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKC 675

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P + TY S+I       RL+ A  +   M    C  N+V Y+A++DG+CR+G  ++A
Sbjct: 676 GYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKA 735

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+LL  MEK G  C+PNVVTYTS+I      G +  +L +  +M   GCAPN VT   LI
Sbjct: 736 LKLLSMMEKRG--CNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLI 793

Query: 314 KGFCVEGNLDEAYQLIDK---------------VVAG------------------GSVSS 340
              C  G LDEA+ L+ +               VV G                  G VS 
Sbjct: 794 NHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSI 853

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA---CSVMIRELCLGGQVLEGFC 397
              Y  L+    +  RL++A +L  +M+      +  +    + +I+ LCL  Q+ + F 
Sbjct: 854 APVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFE 913

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
           LY +I + G +  + + I   L+ GL + N   EA +L   M  + +  Q
Sbjct: 914 LYSEITRKGVVPELSAFI--CLIKGLIKVNKWNEALQLCYSMCDEGVNWQ 961



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 142/297 (47%), Gaps = 18/297 (6%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG----- 178
           GC  SV     + +   K +   +A  +  +M +    P+TI Y+ ++   C+ G     
Sbjct: 520 GCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKA 579

Query: 179 -----------DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
                      D + +D   +G     + P+++TY ++I G C A ++ DA  L  VM  
Sbjct: 580 CEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSS 639

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
           +GC  N + Y AL+DG C++G ++ A E+   M K G    P V TYTS+I        +
Sbjct: 640 NGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGY--LPTVHTYTSLIDAMFKDRRL 697

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
             A+ +L +M    C PN VT + +I G C  G   +A +L+  +   G   +   Y+SL
Sbjct: 698 DLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSL 757

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +  L ++ ++  + +LF++M+  G  P+ +   V+I   C  G + E   L  ++++
Sbjct: 758 IDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ 814



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/492 (20%), Positives = 184/492 (37%), Gaps = 79/492 (16%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI 106
           E+ L   +  L+   V+ VL        ++ +RFF+WA  Q  Y H+   YN   E+   
Sbjct: 92  ERFLRRHRDFLNDAVVVAVLRSV--RTPELCVRFFLWAERQVGYSHTGACYNALAEVLHF 149

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
                    ++    E+   V  +++ VI   C +     +A+  L ++ +F  RP    
Sbjct: 150 DDRARTTERLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGAT 209

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA-------- 218
           YN ++++    G M     + K M  +    D  T     +  C  GR  DA        
Sbjct: 210 YNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWSDALVMIERED 269

Query: 219 ------------CGLFKV------------MKRHGCAANLVAYSALLDGICRLGSMERAL 254
                        GL +             M+ + C  N+V Y  LL G  +   +    
Sbjct: 270 FKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCK 329

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP---------- 304
            ++  M  EG  C+PN   + S++  +C       A  +L+RM   GC P          
Sbjct: 330 RIISMMMNEG--CNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIG 387

Query: 305 -------------------------------NRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
                                          N+V  +   +  C  G  D+A+Q+I  ++
Sbjct: 388 SICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMM 447

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G V     YS ++  L    ++++A  LF +M + GV PD    +++I   C  G + 
Sbjct: 448 RKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIE 507

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
           +    ++++E +G   SV +  ++ LL    +     +A+ +   M+             
Sbjct: 508 QARSWFDEMESVGCSPSVVT--YTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSA 565

Query: 454 IVEHLKKSGDEE 465
           +V+ L K+G+ +
Sbjct: 566 LVDGLCKAGESQ 577



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 137/300 (45%), Gaps = 26/300 (8%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED---- 217
           P+  ++N+++  +C   D   A +L+  M      P  + Y   I   C+   L      
Sbjct: 342 PNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLL 401

Query: 218 --ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
             A  +++ M    C  N V  +     +C +G  ++A +++  M ++G    P+  TY+
Sbjct: 402 ALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGF--VPDTSTYS 459

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            VI   C    +++A  +   M+++G  P+  T + LI  FC  G +++A    D++ + 
Sbjct: 460 KVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESV 519

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   S   Y++L+   ++TK++ +A  +F +M+ +G  P+ +  S ++  LC  G+  + 
Sbjct: 520 GCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKA 579

Query: 396 FCLYEDIEKIGFLSSVDSDI----------------HSVLLLGLCRKNHSVEAAKLARFM 439
             +Y  +  IG   +V SD                 +  L+ GLC+ +  V+A +L   M
Sbjct: 580 CEVYAKM--IGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVM 637



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 7/211 (3%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           ++ GC  +V     + +   K+   + ++ +  +M      P+ + Y  +I   C  G +
Sbjct: 743 EKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLL 802

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L+  M        +  Y S+++GF  + +   + GL + ++ HG  +    Y  L
Sbjct: 803 DEAHSLLSEMKQTYWPKYVQGYCSVVQGF--SKKFIASLGLLEELESHGMVSIAPVYGLL 860

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVV---TYTSVIQIFCGKGMMKEALGILDRM 297
           +D   + G +E+ALEL  EM +     S N+    TYTS+IQ  C    +++A  +   +
Sbjct: 861 IDSFSKAGRLEKALELHKEMMEVSS--SLNITSKDTYTSLIQALCLASQLEKAFELYSEI 918

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
              G  P       LIKG       +EA QL
Sbjct: 919 TRKGVVPELSAFICLIKGLIKVNKWNEALQL 949


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 183/385 (47%), Gaps = 39/385 (10%)

Query: 88  SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
           ++Y ++  ++   CE  +++   S++ D++      GC   V    ++     K R   +
Sbjct: 6   NAYTYNPLIHT-LCERGQVRDALSVLDDMLC----RGCAPDVVTYNILLEATCKGRGYRQ 60

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM ++  M      P+ + YN ++   C +GD+  A EL++ +      P  + Y +++K
Sbjct: 61  AMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK 120

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C+A R  DA  L   M R  C  N   ++ ++  +CR G +++A++LL +M K G  C
Sbjct: 121 GLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG--C 178

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           + N+VTY ++I   C +  +  A+G+L +M++ GC P+ VT +TL+KG C      +A +
Sbjct: 179 TANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEE 238

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+D +   G +     +++L+  L +   + +A ++F +M   G  P+ +  S +I  L 
Sbjct: 239 LMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLA 298

Query: 388 LG---GQVLEGF-------------------CLYED------IEKIGFLSSVDSDIHSVL 419
                 Q LE F                   CL +D      I+ +  L       H+VL
Sbjct: 299 KATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVL 358

Query: 420 ----LLGLCRKNHSVEAAKLARFML 440
               LLGLCR   +  A  +  +M+
Sbjct: 359 YNAILLGLCRNGKTEFAIDIMAYMV 383



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 163/327 (49%), Gaps = 10/327 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LCE+ ++  +A+ VL  M      PD + YN ++   C+      A EL+  M   
Sbjct: 13  LIHTLCERGQV-RDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAE 71

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+ +TY  ++ G C  G ++DA  L + +  HGC  + V Y+ +L G+C       A
Sbjct: 72  GCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDA 131

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL+ EM +E  +C PN  T+  VI   C KG++++A+ +L++M   GC  N VT + +I
Sbjct: 132 DELVTEMLRE--NCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAII 189

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C + N+D A  L+ K+ + G       Y++L+  L    R  +AE+L   M  +G  
Sbjct: 190 NGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCL 249

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  + +I  LC  G +++   +++ +   G   + +S  +S ++ GL +     +A 
Sbjct: 250 PDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKG--CTPNSITYSTIISGLAKATKLDQAL 307

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKK 460
           +L   M  K     G   DKI + L +
Sbjct: 308 ELFNEMGHK-----GFNPDKIYQLLAE 329



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 4/283 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++P+   YN +I   CE+G +  A  ++  M      PD++TY  +++  C       A 
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L  +M+  GC  N V Y+ L+DG+C  G ++ ALELL  +   G  C P+ V Y +V++
Sbjct: 63  ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHG--CKPSTVNYNTVLK 120

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C      +A  ++  M    C PN  T + +I   C +G L +A QL++K+   G  +
Sbjct: 121 GLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTA 180

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y++++  L   + +  A  L SKM + G KPD +  + +++ LC   + ++   L 
Sbjct: 181 NIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELM 240

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +++ + G L   D+   + L+  LC+K   V+A ++ + M  K
Sbjct: 241 DNMTQNGCLP--DNVTFNTLIGFLCQKGLMVDAIEVFKQMPDK 281



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 153/350 (43%), Gaps = 69/350 (19%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++++  + EGC  +     V+ + +C +  + ++A+ +LR +P    +P T+ YN V++
Sbjct: 62  MELIDLMRAEGCTPNNVTYNVLMDGMCGEGDV-DDALELLRNLPSHGCKPSTVNYNTVLK 120

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C       ADEL+  M   +  P+  T+  +I   C  G L+ A  L + M +HGC A
Sbjct: 121 GLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTA 180

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG---------------------------- 264
           N+V Y+A+++G+C   +++ A+ LL +M+  G                            
Sbjct: 181 NIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELM 240

Query: 265 -----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
                  C P+ VT+ ++I   C KG+M +A+ +  +M   GC PN +T ST+I G    
Sbjct: 241 DNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKA 300

Query: 320 GNLD----------------------------------EAYQLIDKVVAGGSVSSGGCYS 345
             LD                                  EA Q + K+   G       Y+
Sbjct: 301 TKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYN 360

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           ++++ L R  + + A  + + M++SG  PD L   ++I  L   G + E 
Sbjct: 361 AILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEA 410



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 121/254 (47%), Gaps = 34/254 (13%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I ++E   + GC  ++     I N LCE+ R  + AM +L KM  +  +PD + YN +++
Sbjct: 167 IQLLEKMSKHGCTANIVTYNAIINGLCEQ-RNVDGAMGLLSKMKSYGCKPDIVTYNTLLK 225

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C     + A+ELM  M      PD +T+ ++I   C  G + DA  +FK M   GC  
Sbjct: 226 GLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTP 285

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG----------GDC--------------- 267
           N + YS ++ G+ +   +++ALEL  EM  +G           +C               
Sbjct: 286 NSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVR 345

Query: 268 -------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
                  SP+ V Y +++   C  G  + A+ I+  M + GC P+ +T   LI+G   EG
Sbjct: 346 KLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEG 405

Query: 321 NLDEAYQLIDKVVA 334
            L+EA +L+ K+ +
Sbjct: 406 YLNEARELLIKLCS 419



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 126/246 (51%), Gaps = 8/246 (3%)

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y+ L+  +C  G +  AL +L +M   G  C+P+VVTY  +++  C     ++A+ 
Sbjct: 6   NAYTYNPLIHTLCERGQVRDALSVLDDMLCRG--CAPDVVTYNILLEATCKGRGYRQAME 63

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           ++D M A GC PN VT + L+ G C EG++D+A +L+  + + G   S   Y++++  L 
Sbjct: 64  LIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLC 123

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
             +R  +A++L ++ML     P+    +V+I  LC  G + +   L E + K G  +++ 
Sbjct: 124 SAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIV 183

Query: 413 SDIHSVLLLGLCRKNHSVEA----AKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
           +  ++ ++ GLC + +   A    +K+  +  K  I      +  +    +    EEL+ 
Sbjct: 184 T--YNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMD 241

Query: 469 NLPKIG 474
           N+ + G
Sbjct: 242 NMTQNG 247


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 148/277 (53%), Gaps = 3/277 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LCE  R  + A W+LR M +  + P+ I +  +I  F + G ++ A EL   M  +
Sbjct: 229 LVTGLCEIGRWGDAA-WLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQM 287

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +YPD+ TY S+I G C  G L++A  +F +M+R+GC  N V Y+ L+ G C+   +E  
Sbjct: 288 SVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDG 347

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +++  EM ++G     N +TYT +IQ +C  G    A  + ++M +    P+  T + L+
Sbjct: 348 MKIFYEMSQKG--VVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLL 405

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G +++A  + + +       +   Y+ ++  + +  ++++A  LF  + + G+K
Sbjct: 406 DGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMK 465

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           P+ +  + MI   C  G + E   L++ +++ GFL +
Sbjct: 466 PNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPN 502



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 146/289 (50%), Gaps = 9/289 (3%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C   R+  +A+ +  ++     +P+ + Y  +IR  C+   +  A EL   MG     P+
Sbjct: 164 CHWNRI-EDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPN 222

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++TY +++ G C  GR  DA  L + M +     N++ ++AL+D   ++G +  A EL  
Sbjct: 223 VVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYN 282

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
            M +      P+V TY S+I   C  G++ EA  +   ME  GC PN V  +TLI GFC 
Sbjct: 283 VMIQM--SVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCK 340

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
              +++  ++  ++   G V++   Y+ L+       R   A+++F++M +    PD   
Sbjct: 341 SKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRT 400

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCR 425
            +V++  LC  G+V +   ++E + K      +D +I  +++++ G+C+
Sbjct: 401 YNVLLDGLCCNGKVEKALMIFEYMRK----REMDINIVTYTIIIQGMCK 445



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 158/323 (48%), Gaps = 22/323 (6%)

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADELMKGMGLIDLYPDIITYVSMIKG 208
           L KM +    PD + + +++  +C      D IA  + + GMG     P+++TY ++I+ 
Sbjct: 141 LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGF---KPNVVTYTTLIRC 197

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C    L  A  LF  M  +G   N+V Y+AL+ G+C +G    A  LL +M K      
Sbjct: 198 LCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKR--RIE 255

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           PNV+T+T++I  F   G + EA  + + M  +   P+  T  +LI G C+ G LDEA Q+
Sbjct: 256 PNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQM 315

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
              +   G   +   Y++L+    ++KR+++  K+F +M   GV  + +  +V+I+  CL
Sbjct: 316 FYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCL 375

Query: 389 GGQVLEGFCLYEDIEKIGF--LSS----VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            G+         D+ +  F  +SS     D   ++VLL GLC      +A  +  +M K+
Sbjct: 376 VGR--------PDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKR 427

Query: 443 RIWLQGPYVDKIVEHLKKSGDEE 465
            + +       I++ + K G  E
Sbjct: 428 EMDINIVTYTIIIQGMCKLGKVE 450



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 170/344 (49%), Gaps = 8/344 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C  +RI+   ++   ++    +   V    +++    LC K R  N A+ +  +M
Sbjct: 159 LLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRC---LC-KNRHLNHAVELFNQM 214

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
                RP+ + YN ++   CE G    A  L++ M    + P++IT+ ++I  F   G+L
Sbjct: 215 GTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKL 274

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
            +A  L+ VM +     ++  Y +L++G+C  G ++ A ++   ME+ G  C PN V YT
Sbjct: 275 MEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNG--CYPNEVIYT 332

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           ++I  FC    +++ + I   M   G   N +T + LI+G+C+ G  D A ++ +++ + 
Sbjct: 333 TLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSR 392

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
            +      Y+ L+  L    ++++A  +F  M    +  + +  +++I+ +C  G+V + 
Sbjct: 393 RAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDA 452

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           F L+  +   G   +V +  ++ ++ G CR+    EA  L + M
Sbjct: 453 FDLFCSLFSKGMKPNVIT--YTTMISGFCRRGLIHEADSLFKKM 494



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 4/186 (2%)

Query: 121 KEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           +  GC  + V    +I   C+  R+  + M +  +M +  +  +TI Y  +I+ +C  G 
Sbjct: 320 ERNGCYPNEVIYTTLIHGFCKSKRV-EDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGR 378

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
              A E+   M      PDI TY  ++ G C  G++E A  +F+ M++     N+V Y+ 
Sbjct: 379 PDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTI 438

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           ++ G+C+LG +E A +L   +  +G    PNV+TYT++I  FC +G++ EA  +  +M+ 
Sbjct: 439 IIQGMCKLGKVEDAFDLFCSLFSKG--MKPNVITYTTMISGFCRRGLIHEADSLFKKMKE 496

Query: 300 LGCAPN 305
            G  PN
Sbjct: 497 DGFLPN 502



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 126/259 (48%), Gaps = 9/259 (3%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P II +  ++       R +    LF+ M+  G    L   + ++  +C      RA   
Sbjct: 81  PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCF 140

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           LG+M K G +  P++VT+TS++  +C    +++A+ + D++  +G  PN VT +TLI+  
Sbjct: 141 LGKMMKLGFE--PDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCL 198

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C   +L+ A +L +++   GS  +   Y++LV  L    R  +A  L   M+   ++P+ 
Sbjct: 199 CKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNV 258

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I      G+++E   LY  + ++     V +  +  L+ GLC      EA ++ 
Sbjct: 259 ITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFT--YGSLINGLCMYGLLDEARQM- 315

Query: 437 RFMLKKRIWLQGPYVDKIV 455
            F L +R    G Y ++++
Sbjct: 316 -FYLMER---NGCYPNEVI 330


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 144/279 (51%), Gaps = 3/279 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD      ++   CE G +  A    + M  +   P++I + S+I G C  G ++ A  +
Sbjct: 273 PDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEM 332

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M R+G   N+  ++AL+DG+C+ G  E+A  L  ++ +      PNV TYTS+I  +
Sbjct: 333 LEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVR-SDIYKPNVHTYTSMIGGY 391

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C +  +  A  +  RM+  G  PN  T +TLI G C  GN D AY+L++ +   G   + 
Sbjct: 392 CKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNI 451

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++++  L +  R  EA +L +K  + G++ DG+  +++I+E C    + +    +  
Sbjct: 452 YTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCR 511

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           + K GF    D  ++++L+   CR+    E+ +L + ++
Sbjct: 512 MNKTGF--EADMRLNNILIAAFCRQKKMKESERLFQLVV 548



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 170/441 (38%), Gaps = 114/441 (25%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM------- 190
           LCE   L N A+W  RKM +   +P+ I + ++I   C+KG +  A E+++ M       
Sbjct: 285 LCENG-LVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKP 343

Query: 191 ------GLID----------------------LY-PDIITYVSMIKGFCNAGRLEDACGL 221
                  LID                      +Y P++ TY SMI G+C   +L  A  L
Sbjct: 344 NVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEML 403

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV---------- 271
           F  MK  G   N+  Y+ L++G C+ G+ +RA EL+  M+ EG    PN+          
Sbjct: 404 FSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEG--FRPNIYTYNAVIDSL 461

Query: 272 -------------------------VTYTSVIQIFCGKGMMKEALGILDRME-------- 298
                                    VTYT +IQ  C +  +K+AL    RM         
Sbjct: 462 CKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADM 521

Query: 299 ---------------------------ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
                                      +LG  P + T +++I G+C EG+ D A +    
Sbjct: 522 RLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHN 581

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +   G V     Y SL+  L +   + EA KL+  M+  G+ P  +    +  E C    
Sbjct: 582 MKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRND 641

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV 451
                 + E ++K  ++ +V +     L+  LC +     AA   + +L+K        +
Sbjct: 642 SASAMIVLEPLDKKLWIRTVRT-----LVRKLCSEKKVGVAALFFQKLLEKDSSADRVTL 696

Query: 452 DKIVEHLKKSGDEELITNLPK 472
                   +SG   L+ +L +
Sbjct: 697 AAFTTACSESGKNNLVADLTE 717



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 93/190 (48%), Gaps = 4/190 (2%)

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +++ F   G + EA+G++  M+  G +P+ +T++ +++     G +D A  + D++   G
Sbjct: 176 MLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRG 235

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
                  +  +V+   R  +++EA++  S M+  G  PD   C++++  LC  G V    
Sbjct: 236 VCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAI 295

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK-IV 455
             +  +  +GF  ++ +   + L+ GLC+K    +A ++   M++   W    Y    ++
Sbjct: 296 WYFRKMIDLGFKPNLIN--FTSLIDGLCKKGSIKQAFEMLEEMVRNG-WKPNVYTHTALI 352

Query: 456 EHLKKSGDEE 465
           + L K G  E
Sbjct: 353 DGLCKRGWTE 362


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 150/283 (53%), Gaps = 4/283 (1%)

Query: 121 KEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           KEE C   SV    +I  LCE  RL  EA  + ++M E   +P T  Y  +I+  C+ G 
Sbjct: 191 KEESCRPNSVTYSILIHGLCEAGRL-EEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGM 249

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
              A +++  M      P++ TY  +I   C  G++E+A G+F+ M +HG    ++ ++A
Sbjct: 250 TDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNA 309

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L++G C+ G +  A +LL  MEK  G+C PN+ TY  +++  C      +A  +L R+  
Sbjct: 310 LINGYCKEGWVVSAFQLLSVMEK--GNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD 367

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  P+RVT + L+ GFC EG L+ A+ + + + + G    G  +++L+  L +  RL++
Sbjct: 368 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 427

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           A  +   M+  G+  D +  + +I   C  G+  +   L+E++
Sbjct: 428 ANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENM 470



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 182/433 (42%), Gaps = 67/433 (15%)

Query: 75  QMGIRFFIWAALQSSY-----------------------RHSSFMYNRACEMSRIKQNPS 111
           ++G+RFF W   QSSY                       + +  +  + CE S   +N  
Sbjct: 18  ELGVRFFKWVCRQSSYCYDLDGRIQLLGVLVSRDLFGVAQKAVVLLIQECEDS---ENGV 74

Query: 112 I-IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           + ++  ++   E G  +S      +     K  +   A  V R+M         I Y  V
Sbjct: 75  VKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTV 134

Query: 171 IRLFCEKG-----DMIAADELMKGMGLI---------------DL--------------- 195
           +   C+ G     +M     L  G GL                DL               
Sbjct: 135 VNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEES 194

Query: 196 -YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             P+ +TY  +I G C AGRLE+A  L + M   GC  +   Y+ L+   C +G  ++A+
Sbjct: 195 CRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAM 254

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           ++L EM  +   C PNV TYT +I   C +G ++EA G+  +M   G  P  +T + LI 
Sbjct: 255 KMLDEMATKA--CVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALIN 312

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G+C EG +  A+QL+  +  G    +   Y+ L+  L R  +  +A  L  +++ +G+ P
Sbjct: 313 GYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLP 372

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  ++++   C  GQ+   F ++  +   G     D    + L+ GLC+     +A  
Sbjct: 373 DRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL--EPDGFTFTALIDGLCKLGRLEQANG 430

Query: 435 LARFMLKKRIWLQ 447
           +   M+KK I L 
Sbjct: 431 ILGSMVKKGISLD 443



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 167/365 (45%), Gaps = 52/365 (14%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C++ +L N A  +   M    L PD   +  +I   C+ G +  A+ ++  M    +  
Sbjct: 384 FCKEGQL-NMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISL 442

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFK---------------------------------- 223
           D +T+ ++I G C  G+ +D C LF+                                  
Sbjct: 443 DEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAML 502

Query: 224 -VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M ++G   ++V ++ L++G CR G    +L++L  M++ G  CSPNV TYT +I   C
Sbjct: 503 GKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG--CSPNVYTYTIIINGLC 560

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G ++EA  IL  M + G +PN  T + L+K     G LD A+Q++  +V  G   +  
Sbjct: 561 NNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSH 620

Query: 343 CYSSLVVELVRT------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
            YS+L+   V +      + L     L ++ L+S    +    S + R +     V    
Sbjct: 621 IYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLM----DVDHAL 676

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456
            + ++I+K G  +    D+++ L++GLC++   +EA +L + M+K  ++     +  I+E
Sbjct: 677 KIRDEIKKCGVPT---EDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLF-PDKAISSIIE 732

Query: 457 HLKKS 461
           H  K+
Sbjct: 733 HYCKT 737



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 171/353 (48%), Gaps = 11/353 (3%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLA 145
           Q S R  + +    C++    +     + +++    + CV +V    ++ + LC + ++ 
Sbjct: 231 QPSTRTYTVLIKAKCDIGMTDK----AMKMLDEMATKACVPNVHTYTILIDRLCREGKI- 285

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            EA  V RKM +  L P  I +N +I  +C++G +++A +L+  M   +  P+I TY  +
Sbjct: 286 EEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNEL 345

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           ++G C   +   A  L + +  +G   + V Y+ L+DG C+ G +  A  +   M   G 
Sbjct: 346 MEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAG- 404

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+  T+T++I   C  G +++A GIL  M   G + + VT + LI G C  G   + 
Sbjct: 405 -LEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDV 463

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L + +V    +++   ++  +  L +  +L EA  +  KM+  G+ P  +  +++I  
Sbjct: 464 CFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG 523

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            C  G+      + E +++ G   +V +  +++++ GLC  N  VE A+   F
Sbjct: 524 HCRAGETALSLKMLERMKQAGCSPNVYT--YTIIINGLC-NNGRVEEAETILF 573



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 124/274 (45%), Gaps = 6/274 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E   E  C+ +        +   K    NEA  +L KM ++ L P  + +  +I   C
Sbjct: 466 LFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHC 525

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G+   + ++++ M      P++ TY  +I G CN GR+E+A  +   M   G + N  
Sbjct: 526 RAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHF 585

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ--IFCGKGMMKEALGI 293
            Y+ L+    + G ++RA +++  M K G  C PN   Y++++   +     +   AL  
Sbjct: 586 TYAVLVKAHVKAGRLDRAFQIVSTMVKNG--CQPNSHIYSALLSGFVLSNTAIGARALSS 643

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              ++A   +      + L        ++D A ++ D++   G V +   Y+ LVV L +
Sbjct: 644 TGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCG-VPTEDLYNFLVVGLCK 702

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
             R+ EA++L   M+  G+ PD  A S +I   C
Sbjct: 703 EGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYC 735


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 148/275 (53%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+    +L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++ A  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG + +A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 279 LPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E+C
Sbjct: 339 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G  L ++++  G   SV +  ++VL+ G
Sbjct: 399 KKGDVGKGSKLLKEMQXDGHAPSVVT--YNVLMNG 431


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 140/261 (53%), Gaps = 2/261 (0%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           V   + ++ LRP  + +N ++  +   GD+     L   M    + PD+ TY  +I G C
Sbjct: 150 VFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLC 209

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
              +++ A  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    S +
Sbjct: 210 KESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--LSAD 267

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           ++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+L+ A++   
Sbjct: 268 LITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRK 327

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C  G
Sbjct: 328 RMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKG 387

Query: 391 QVLEGFCLYEDIEKIGFLSSV 411
            V  G  L +++++ G + SV
Sbjct: 388 DVWTGSKLLKEMQRDGHVPSV 408



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 131/274 (47%), Gaps = 15/274 (5%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+++ L++G  RLG ++   
Sbjct: 124 YPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGF 183

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  +  A  + D M   G  PN VT +TLI 
Sbjct: 184 RLKSAMHASG--VEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLID 241

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++    +    Y++L+  L +   LK+A+ L  +M   G+KP
Sbjct: 242 GHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKP 301

Query: 375 DGLACSVMIRELCLGGQVLEGF-----CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           D +  + +I   C  G +   F      + E+I        +D  +++ L+ GLC++  S
Sbjct: 302 DKITYTTLIDGCCKEGDLETAFEHRKRMIQENIR-------LDDVVYTTLISGLCQEGRS 354

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V+A K+ R ML   +         I+    K GD
Sbjct: 355 VDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGD 388



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 106/216 (49%), Gaps = 8/216 (3%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVL 152
           S + N  C+ S+I     +  ++++    +G V + V    +I   C+  R+ + AM + 
Sbjct: 202 SVLINGLCKESKIDGANELFDEMLD----KGLVPNGVTFTTLIDGHCKNGRV-DLAMEIY 256

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           ++M    L  D I YN +I   C+KGD+  A  L+  M +  L PD ITY ++I G C  
Sbjct: 257 KQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKE 316

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G LE A    K M +     + V Y+ L+ G+C+ G    A ++L EM   G    P+  
Sbjct: 317 GDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVG--LKPDTG 374

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           TYT +I  FC KG +     +L  M+  G  P+ VT
Sbjct: 375 TYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 185/408 (45%), Gaps = 41/408 (10%)

Query: 73  QSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132
           + ++ +RFF WA  Q  Y H    +    E+     +   I  V    K+ G +++    
Sbjct: 129 KPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRGLLMTESAA 188

Query: 133 KVIFNLCEKARLANEAMWVLRKMPE-----------------------------FDLR-- 161
             +        L  E +WV R+M E                             F++   
Sbjct: 189 NSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDG 248

Query: 162 ----PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
               PDT+ YN +I+ +C+ G +  A E  + M + ++ PD ITY+++I+  C + R  D
Sbjct: 249 GKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQA-CYSERDFD 307

Query: 218 AC-GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            C  L+  M+  G      +YS ++ G+C+      A  +   M ++G  C  NV  YT+
Sbjct: 308 TCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKG--CRANVAIYTA 365

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I  +   G M+EA+ + +RM+  G  P+ VT S L+ G C  G LD+  +L D     G
Sbjct: 366 LIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKG 425

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
              +   Y+SL+  L +  R+++AE LF +M   G   D    + +I  L   G++ +  
Sbjct: 426 VAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQAL 485

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            L+  +E+ G   +V +   ++L+ GL +++ + EA K    M+ K I
Sbjct: 486 ALFGRMEEEGCDQTVYT--FTILIDGLFKEHKNEEAIKFWDKMIDKGI 531



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 103/300 (34%), Gaps = 91/300 (30%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V E   ++GC  +V +   + +   K     EAM +  +M      PD + Y+ ++   C
Sbjct: 347 VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLC 406

Query: 176 EKGDMIAADELM-----KGMGLIDLYPDIITYVSMIKGFCNAGRLED------------- 217
           + G +    EL      KG+ +  ++     Y S+I G   AGR+ED             
Sbjct: 407 KSGRLDDGMELFDFCRNKGVAINAMF-----YASLIDGLGKAGRIEDAENLFEEMSEKGC 461

Query: 218 ----------------------ACGLFKVMKRHGCAANLVAYSALLDGI----------- 244
                                 A  LF  M+  GC   +  ++ L+DG+           
Sbjct: 462 ARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIK 521

Query: 245 ------------------------CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
                                   C  G + RA ++L ++   G    P    +  +I  
Sbjct: 522 FWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDDLAPMG--IIPE-TAFEDMINT 578

Query: 281 FCGKGMMKEAL----GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
            C    +KEA     GI+DR   +   P R+  + LI      GN D   +L+   +  G
Sbjct: 579 LCKAQRIKEACKLADGIVDRGREI---PGRIR-TVLINALRKAGNSDLVIKLMHSKIGIG 634


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 178/369 (48%), Gaps = 17/369 (4%)

Query: 116 VVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLR-----PDTIIYNN 169
           V+    E GC+  V     ++  LC++ R + EA+ +L  M   D R     PD + YN 
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENR-SQEALELLHMMA--DDRGGGSPPDVVSYNT 206

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           V+  F ++GD   A      M    + PD++TY S+I   C A  ++ A  +   M ++G
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              + + Y+++L G C  G  + A+  L +M  +G    PNVVTY+S++   C  G   E
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDG--VEPNVVTYSSLMNYLCKNGRSTE 324

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  I D M   G  P+  T  TL++G+  +G L E + L+D +V  G       ++ L+ 
Sbjct: 325 ARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILIC 384

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
              + +++ +A  +FSKM   G+ P+ +    +I  LC  G V +    +E +   G   
Sbjct: 385 AYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 444

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG----DEE 465
           ++   +++ L+ GLC  +   +A +L   ML + I L   + + I++   K G     E+
Sbjct: 445 NI--IVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 502

Query: 466 LITNLPKIG 474
           L   + +IG
Sbjct: 503 LFDLMVRIG 511



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 182/389 (46%), Gaps = 41/389 (10%)

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           P   I  ++  + +G   +V     + N LC+  R + EA  +   M +  L PD   Y 
Sbjct: 287 PKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGR-STEARKIFDSMTKRGLEPDIATYR 345

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +++ +  KG ++    L+  M    + PD   +  +I  +    +++ A  +F  M++H
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQH 405

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ--------- 279
           G   N+V Y  ++D +C+ GS++ A+    +M  EG   +PN++ YTS+I          
Sbjct: 406 GLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEG--LTPNIIVYTSLIHGLCTCDKWD 463

Query: 280 ------------------IF--------CGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
                             IF        C +G + E+  + D M  +G  P+ +T +TLI
Sbjct: 464 KAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 523

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C+ G +DEA +L+  +V+ G       Y +L+    R  R+ +A  LF +M++SGV 
Sbjct: 524 DGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVS 583

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  +++++ L    +      LY  I K G  + ++   ++++L GLC+ N + EA 
Sbjct: 584 PNIITYNIILQGLFHTRRTAAAKELYVSITKSG--TQLELSTYNIILHGLCKNNLTDEAL 641

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           ++ + +    + L+    + ++  L K G
Sbjct: 642 RMFQNLCLTDLQLETRTFNIMIGALLKCG 670



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 3/268 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C+ ++    +I + C++ R+  E+  +   M    ++PD I YN +I   C  G M  A 
Sbjct: 478 CLNTIFFNSIIDSHCKEGRVI-ESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEAT 536

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L+  M  + + PDI+TY ++I G+C   R++DA  LFK M   G + N++ Y+ +L G+
Sbjct: 537 KLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 596

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
                   A EL   + K G      + TY  ++   C   +  EAL +   +       
Sbjct: 597 FHTRRTAAAKELYVSITKSGTQLE--LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 654

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + +I      G +DEA  L     A G V     YS +   L+    L+E + LF
Sbjct: 655 ETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLF 714

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQV 392
             M  +G   D    + ++R+L   G +
Sbjct: 715 LSMEENGCSADSRMLNSIVRKLLQRGDI 742



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 130/274 (47%), Gaps = 15/274 (5%)

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           M   G   + P + TY  +I   C AGRL+        + + G   + + ++ LL G+C 
Sbjct: 80  MARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCA 139

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCA 303
                 A++++     E G C P+V +Y ++++  C +   +EAL +L  M      G  
Sbjct: 140 DKRTSDAMDIVLRRMTELG-CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSP 198

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ V+ +T++ GF  EG+ D+AY    +++  G +     YSS++  L + + + +A ++
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEV 258

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
            + M+ +GV PD +  + ++   C  GQ  E     + +   G   +V +  +S L+  L
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVT--YSSLMNYL 316

Query: 424 CRKNHSVEAAKLARFMLKK---------RIWLQG 448
           C+   S EA K+   M K+         R  LQG
Sbjct: 317 CKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 350



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 110/264 (41%), Gaps = 9/264 (3%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-GDCSPNVVTY 274
           EDA  +F  + R G  A++   +  L  + R  S   A+     M + G G  +P V TY
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTY 95

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI-DKVV 333
             +I   C  G +      L  +   G   + +T + L+KG C +    +A  ++  ++ 
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMT 155

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML---ASGVKPDGLACSVMIRELCLGG 390
             G +     Y++L+  L    R +EA +L   M      G  PD ++ + ++      G
Sbjct: 156 ELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEG 215

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
              + +  Y ++   G L  V +  +S ++  LC+     +A ++   M+K  +      
Sbjct: 216 DSDKAYSTYHEMLDRGILPDVVT--YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 273

Query: 451 VDKIVEHLKKSGD-EELITNLPKI 473
            + I+     SG  +E I  L K+
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKM 297



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC K  L +EA+ + + +   DL+ +T  +N +I    + G M  A +L       
Sbjct: 627 ILHGLC-KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSAN 685

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ TY  M +     G LE+   LF  M+ +GC+A+    ++++  + + G + RA
Sbjct: 686 GLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 745


>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
 gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
          Length = 600

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 157/327 (48%), Gaps = 4/327 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V +     G  VS  +   + ++C KA  A  A  ++ +M    +  D   YN VI L+C
Sbjct: 171 VFDEMARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYC 230

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +KG    A  +   M    +  D +T+ S+I G C  GR+++A  LF  M       + V
Sbjct: 231 KKGMRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNV 290

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L+DG CR G++E A++L GEME  G    P V TY ++++  C  G MKE   +L+
Sbjct: 291 TYTTLIDGYCRAGNIEEAVKLRGEMEATG--MLPGVATYNAILRKLCEDGKMKEVNQLLN 348

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+      + VT +TLI  +C  G++  A ++  K++  G   +   Y +L+    + K
Sbjct: 349 EMDERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAK 408

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            L EA++ F +M+ +G  P+    S ++   C          + +++ K G     D  +
Sbjct: 409 ELDEAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGL--PPDKAV 466

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +  L+  LCRK    +A K+   M  K
Sbjct: 467 YRSLIRRLCRKGLVDQAQKVFDQMQSK 493



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 148/313 (47%), Gaps = 5/313 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI   C+K  +  EAM V  +M +  +R DT+ +N++I   C+ G +  A +L   M   
Sbjct: 225 VIALYCKKG-MRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAA 283

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD +TY ++I G+C AG +E+A  L   M+  G    +  Y+A+L  +C  G M+  
Sbjct: 284 QATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEV 343

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +LL EM++       + VT  ++I  +C +G M  A  +  +M   G   N+ T   LI
Sbjct: 344 NQLLNEMDER--KVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALI 401

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC    LDEA +   ++V  G   +   +S LV    +         +  +++  G+ 
Sbjct: 402 HGFCKAKELDEAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLP 461

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD      +IR LC  G V +   +++ ++  G +   DS +++ L      +   V A+
Sbjct: 462 PDKAVYRSLIRRLCRKGLVDQAQKVFDQMQSKGLVG--DSLVYATLAYTYLTEGKPVAAS 519

Query: 434 KLARFMLKKRIWL 446
                M K ++++
Sbjct: 520 NTLDGMAKNQLYI 532



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 148/320 (46%), Gaps = 4/320 (1%)

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           P   + V +  +  G          +     +AR+   A  V  +M    L   T +YN 
Sbjct: 130 PHDALRVFDQMRARGLAPDAHACTALLTALARARMTATARRVFDEMARAGLAVSTHVYNA 189

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           ++ +  + GD   A+ L+  M    +  D  +Y ++I  +C  G   +A  +   M + G
Sbjct: 190 MLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVRDRMDKEG 249

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
             A+ V +++L+ G+C+ G ++ A +L  EM       +P+ VTYT++I  +C  G ++E
Sbjct: 250 IRADTVTWNSLIHGLCKYGRVKEAAQLFTEM--AAAQATPDNVTYTTLIDGYCRAGNIEE 307

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A+ +   MEA G  P   T + +++  C +G + E  QL++++      +     ++L+ 
Sbjct: 308 AVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLIN 367

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
              +   +  A K+  KM+ SG++ +      +I   C   ++ E    +  +   GF  
Sbjct: 368 AYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAGF-- 425

Query: 410 SVDSDIHSVLLLGLCRKNHS 429
           S +  + S L+ G C+KN++
Sbjct: 426 SPNYSVFSWLVDGFCKKNNA 445


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 145/288 (50%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KV+  LC  +++   A  +  +M    L  D   Y  ++  FC+ G +  A +    M  
Sbjct: 488 KVLNYLCNASKM-ELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   P+++TY ++I  +  A ++  A  LF+ M   GC  N+V YSAL+DG C+ G +E+
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEK 606

Query: 253 ALELLGEM------------EKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A ++   M             K+  D S  PNVVTY +++  FC    ++EA  +LD M 
Sbjct: 607 ACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMS 666

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             GC PN++    LI G C  G LDEA ++  ++   G  ++   YSSL+    + KR  
Sbjct: 667 MEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQD 726

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ SKML +   P+ +  + MI  LC  G+  E + L + +E+ G
Sbjct: 727 LASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 774



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 183/388 (47%), Gaps = 23/388 (5%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI 106
           +K L   + KL  + VIEVL     ++    I FF+WA  Q  Y+H++ +YN   ++   
Sbjct: 120 QKFLRQFREKLSESLVIEVLR--LIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVR 177

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
             +  +  + ++  +++   V  + + V+     +    + A+  L ++ +F  RP    
Sbjct: 178 DDDEKVPEEFLQQIRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRST 237

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +I+ F +   + +A  + + M L +L  D  T        C  G+  +A  L   ++
Sbjct: 238 YNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTL---VE 294

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
                 + V Y+ L+ G+C     E A++ L  M      C PNVVTY++++   CG  +
Sbjct: 295 TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRM--RATSCLPNVVTYSTLL---CG-CL 348

Query: 287 MKEALG----ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            K+ LG    +L+ M   GC P+    ++L+  +C  G+   AY+L+ K+V  G +    
Sbjct: 349 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYV 408

Query: 343 CYSSLVVELVRTKR------LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
            Y+ L+  +   K       L  AEK +S+MLA+GV  + +  S   R LC  G+  + F
Sbjct: 409 VYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAF 468

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            +  ++   GF+   D+  +S +L  LC
Sbjct: 469 SVIREMIGQGFIP--DTSTYSKVLNYLC 494



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 162/342 (47%), Gaps = 14/342 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+  R+++   ++    +A   EGC  +  +   + + LC+  +L +EA  V  +M E  
Sbjct: 650 CKSHRVEEARKLL----DAMSMEGCEPNQIVYDALIDGLCKVGKL-DEAQEVKTEMSEHG 704

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
                  Y+++I  + +      A +++  M      P+++ Y  MI G C  G+ ++A 
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 764

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L ++M+  GC  N+V Y+A++DG   +G +E  LELL  M  +G   +PN VTY  +I 
Sbjct: 765 KLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKG--VAPNYVTYRVLID 822

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G +  A  +L+ M+      +      +I+GF  E    E+  L+D++    +  
Sbjct: 823 HCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDEIGQDDTAP 880

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKM--LASGVKPDGLACSVMIRELCLGGQVLEGFC 397
               Y  L+  L++ +RL+ A +L  ++   ++ +       + +I  LCL  +V   F 
Sbjct: 881 FLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQ 940

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           L+ ++ K G +  + S     L+ GL R +   EA  L  F+
Sbjct: 941 LFSEMTKKGVIPEMQS--FCSLIKGLFRNSKISEALLLLDFI 980



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 27/354 (7%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           CE S  ++     +D +   +   C+ +V     +   C   +       VL  M     
Sbjct: 313 CEASLFEE----AMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGC 368

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC------NAGR 214
            P   I+N+++  +C  GD   A +L+K M      P  + Y  +I   C      N   
Sbjct: 369 YPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDL 428

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L+ A   +  M   G   N +  S+    +C  G  E+A  ++ EM  +G    P+  TY
Sbjct: 429 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGF--IPDTSTY 486

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + V+   C    M+ A  + + M+  G   +  T + ++  FC  G +++A +  +++  
Sbjct: 487 SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV-- 392
            G   +   Y++L+   ++ K++  A +LF  ML+ G  P+ +  S +I   C  GQV  
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEK 606

Query: 393 ----LEGFCLYEDIEKIG-FLSSVDSD-------IHSVLLLGLCRKNHSVEAAK 434
                E  C  +D+  +  +    D +        +  LL G C K+H VE A+
Sbjct: 607 ACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFC-KSHRVEEAR 659



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 110/251 (43%), Gaps = 8/251 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PDT+ Y  +I   CE      A + +  M      P+++TY +++ G  N  +L     +
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRV 359

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
             +M   GC  +   +++L+   C  G    A +LL +M K G    P  V Y  +I   
Sbjct: 360 LNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH--MPGYVVYNILIGSI 417

Query: 282 CGK------GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           CG        ++  A      M A G   N++ +S+  +  C  G  ++A+ +I +++  
Sbjct: 418 CGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQ 477

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G +     YS ++  L    +++ A  LF +M   G+  D    ++M+   C  G + + 
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 396 FCLYEDIEKIG 406
              + ++ ++G
Sbjct: 538 RKWFNEMREVG 548


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 158/308 (51%), Gaps = 4/308 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V M   I +   K +L NEA  +  +M    + PD + Y+ +I  FC  G +  A +L 
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLF 283

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M L ++ PD+ T+  ++  FC  G++++   +F +M + G   N V Y++L+DG C +
Sbjct: 284 NKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLV 343

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             + +A  +   M +  G  +P++ +Y+ +I  FC      EA+ +   M      P+ V
Sbjct: 344 KEVNKAKSIFNTMAQ--GGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVV 401

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S+LI G    G +  A QL+D++   G   +   Y+S++  L +  ++ +A  L +K+
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKL 461

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G++P+    S++I+ LC  G++ +   ++E +   G   +++ D +++++ G C + 
Sbjct: 462 KDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKG--HNLNVDTYTIMIQGFCVEG 519

Query: 428 HSVEAAKL 435
              EA  L
Sbjct: 520 LFNEALAL 527



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 162/322 (50%), Gaps = 4/322 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K++  +  +++ +KM    ++P+ +  N +I  FC+ G +  A  +   +  +   PD I
Sbjct: 97  KSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTI 156

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T+ ++IKG C  G+++ A      +   G   + ++Y  L+ G+C++G    AL+LL  +
Sbjct: 157 TFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRV 216

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           +  G    PNVV Y ++I   C   ++ EA  +   M + G +P+ VT S LI GFC+ G
Sbjct: 217 D--GNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILG 274

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            L++A  L +K++          ++ LV    +  ++KE + +F  M+  G+KP+ +  +
Sbjct: 275 KLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYN 334

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            ++   CL  +V +   ++  + + G    + S  +S+++ G C+     EA  L + M 
Sbjct: 335 SLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQS--YSIMINGFCKIKKFDEAMNLFKEMH 392

Query: 441 KKRIWLQGPYVDKIVEHLKKSG 462
           +K I         +++ L KSG
Sbjct: 393 RKNIIPDVVTYSSLIDGLSKSG 414



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 155/309 (50%), Gaps = 11/309 (3%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A+ +  KM   +++PD   +N ++  FC+ G M     +   M    + P+ +TY S+
Sbjct: 277 NDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSL 336

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + G+C    +  A  +F  M + G   ++ +YS +++G C++   + A+ L  EM ++  
Sbjct: 337 MDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRK-- 394

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  P+VVTY+S+I      G +  AL ++D+M   G  P   T ++++   C    +D+A
Sbjct: 395 NIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKA 454

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L+ K+   G   +   YS L+  L ++ +L++A K+F  +L  G   +    ++MI+ 
Sbjct: 455 IALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQG 514

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK--- 442
            C+ G   E   L   +E  G +   D+  + +++L L +K+ +  A KL R M+ +   
Sbjct: 515 FCVEGLFNEALALLSKMEDNGCIP--DAKTYEIIILSLFKKDENDMAEKLLREMIARGVR 572

Query: 443 ----RIWLQ 447
                IW Q
Sbjct: 573 PRQIAIWFQ 581



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 161/371 (43%), Gaps = 48/371 (12%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM 103
           N ++  +      +DS C +++++  F   S+M     I   +       S + +  C +
Sbjct: 219 NLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM-----ISKGISPDVVTYSALISGFCIL 273

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRP 162
            ++       ID+      E     V    ++ N  C+  ++  E   V   M +  ++P
Sbjct: 274 GKLND----AIDLFNKMILENIKPDVYTFNILVNAFCKDGKMK-EGKTVFDMMMKQGIKP 328

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           + + YN+++  +C   ++  A  +   M    + PDI +Y  MI GFC   + ++A  LF
Sbjct: 329 NFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLF 388

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           K M R     ++V YS+L+DG+ + G +  AL+L+ +M   G    P + TY S++   C
Sbjct: 389 KEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG--VPPTIRTYNSILDALC 446

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIK---------------------------- 314
               + +A+ +L +++  G  PN  T S LIK                            
Sbjct: 447 KIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVD 506

Query: 315 -------GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
                  GFCVEG  +EA  L+ K+   G +     Y  +++ L +      AEKL  +M
Sbjct: 507 TYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREM 566

Query: 368 LASGVKPDGLA 378
           +A GV+P  +A
Sbjct: 567 IARGVRPRQIA 577



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 126/284 (44%), Gaps = 43/284 (15%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + I+Y S    F +   ++DA  LF  + R         ++ +L  + +       L L 
Sbjct: 49  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLS 108

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +ME  G    PN+V    +I  FC  G++  A  +  ++  +G  P+ +T +TLIKG C
Sbjct: 109 QKMEFRG--IKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLC 166

Query: 318 VEGNLDEAYQLIDKVVA---------GGSVSSGGC------------------------- 343
           ++G + +A+   DKVVA          G++  G C                         
Sbjct: 167 LKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVV 226

Query: 344 -YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y++++  + + K + EA  LFS+M++ G+ PD +  S +I   C+ G++ +   L+  +
Sbjct: 227 MYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKM 286

Query: 403 EKIGFLSSVDSDIHS--VLLLGLCRKNHSVEAAKLARFMLKKRI 444
                L ++  D+++  +L+   C+     E   +   M+K+ I
Sbjct: 287 ----ILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGI 326



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 123/267 (46%), Gaps = 17/267 (6%)

Query: 46  IEKTLATVKAKLDSTCVIEVLHRC---FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE 102
           I+    T  + +D  C+++ +++    F + +Q G+       +QS     S M N  C+
Sbjct: 326 IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVN----PDIQSY----SIMINGFCK 377

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP 162
           + +  +  ++     E +++      V    +I  L +  R++  A+ ++ +M +  + P
Sbjct: 378 IKKFDEAMNLF---KEMHRKNIIPDVVTYSSLIDGLSKSGRIS-YALQLVDQMHDRGVPP 433

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
               YN+++   C+   +  A  L+  +    + P++ TY  +IKG C +G+LEDA  +F
Sbjct: 434 TIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVF 493

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + +   G   N+  Y+ ++ G C  G    AL LL +ME  G  C P+  TY  +I    
Sbjct: 494 EGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNG--CIPDAKTYEIIILSLF 551

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTI 309
            K     A  +L  M A G  P ++ I
Sbjct: 552 KKDENDMAEKLLREMIARGVRPRQIAI 578



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 7/150 (4%)

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N ++ S+    F    ++D+A  L ++++   +      ++ ++  LV++K       L 
Sbjct: 49  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLS 108

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            KM   G+KP+ + C+++I   C  G +   F ++  I K+G++   D+   + L+ GLC
Sbjct: 109 QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVP--DTITFTTLIKGLC 166

Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
            K    +A     F+   ++   G + D+I
Sbjct: 167 LKGQIQQA-----FLFHDKVVALGFHFDQI 191


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 192/399 (48%), Gaps = 10/399 (2%)

Query: 77  GIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136
            + FF W++    +  S   YN   +++   +   +   V++  K  G  ++V     + 
Sbjct: 161 SLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALV 220

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
               +A LA EA+    +M ++   PD + ++ VI   C+K     A      +      
Sbjct: 221 RRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKH-RFE 279

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD++ Y S++ G+C AG +  A  +F  MK  G   N+  YS ++D +CR G + RA ++
Sbjct: 280 PDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDV 339

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             EM   G  C PN VT+ S++++    G  ++ L + ++M+ LGC  + ++ + +I+  
Sbjct: 340 FSEMIDAG--CDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESH 397

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C + NL+EA ++++ +V  G   +   ++ +   + +   +  A +++++M     +P+ 
Sbjct: 398 CRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNT 457

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           L  ++++R             + +++++     +V++  + +L+   C   H   A KL 
Sbjct: 458 LTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNT--YRILISMFCDMKHWNNAYKLM 515

Query: 437 RFMLKKRIWLQGPYV-DKIVEHLKKSGD----EELITNL 470
             M++++       V + ++E L+K+G     EEL+  +
Sbjct: 516 MEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKM 554



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 7/228 (3%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           DV     + GC  +      +  +  KA    + + V  +M       DTI YN +I   
Sbjct: 338 DVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESH 397

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C   ++  A +++  M    + P+  T+  +         +  A  ++  MK   C  N 
Sbjct: 398 CRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNT 457

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALG 292
           + Y+ L+    R+ +  R+ +++ +M+KE  +    PNV TY  +I +FC       A  
Sbjct: 458 LTYNILM----RMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILISMFCDMKHWNNAYK 513

Query: 293 ILDRMEALGC-APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
           ++  M    C  PN     T+++     G L +  +L+DK+VA G V+
Sbjct: 514 LMMEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKMVARGFVT 561



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 1/149 (0%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           ++G   +      IF    K    N A  +  +M E + +P+T+ YN ++R+F E     
Sbjct: 415 KKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTD 474

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC-AANLVAYSAL 240
              ++ K M    + P++ TY  +I  FC+     +A  L   M    C   NL  Y  +
Sbjct: 475 MVLKMKKEMDESQVEPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETV 534

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSP 269
           L+ + + G +++  EL+ +M   G    P
Sbjct: 535 LELLRKAGQLKKHEELVDKMVARGFVTRP 563



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 3/190 (1%)

Query: 113 IIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           ++ V    K  GC   ++    +I + C    L  EA  +L  M +  + P+   +N + 
Sbjct: 371 VLKVYNQMKRLGCPADTISYNFIIESHCRDENL-EEAAKILNLMVKKGVAPNASTFNFIF 429

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
               +  D+  A  +   M  ++  P+ +TY  +++ F  +   +    + K M      
Sbjct: 430 GCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVE 489

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            N+  Y  L+   C +     A +L+ EM +E     PN+  Y +V+++    G +K+  
Sbjct: 490 PNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKC-LRPNLSVYETVLELLRKAGQLKKHE 548

Query: 292 GILDRMEALG 301
            ++D+M A G
Sbjct: 549 ELVDKMVARG 558


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 189/389 (48%), Gaps = 9/389 (2%)

Query: 77  GIRFFIWAALQSSYRHSSFMYNRACEM---SRIKQNPSIIIDVVEAYKEEGCVVSVKMMK 133
            +RFF WA     YRH S +Y    E+   +++ Q    I+ ++   + + C  +   + 
Sbjct: 229 ALRFFYWADRLWRYRHDSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVM 288

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V ++   + R   +AM VL  M +  + P+  I N  I +     ++  A    + M LI
Sbjct: 289 VSYSRAGRLR---DAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLI 345

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+++TY  +IKG+CN  +++ A  L   M   GC+ + V+Y  ++  +CR   +   
Sbjct: 346 GIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEI 405

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL+ +M+ +     P+ VTY S+IQ+    G   EAL IL   E L    ++V  S ++
Sbjct: 406 RELIKKMQTD-SKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIV 464

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             +C EG + +A +L+ ++ + G       Y+S++    R  +L +A+K+  +M     K
Sbjct: 465 HAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCK 524

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  +  +  LC  G+ LE   +    E+  +  + ++  +SV++ GL R+    EA 
Sbjct: 525 PNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWW--TPNAITYSVVVHGLRREGKLNEAC 582

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            + R M+ K  +     ++ +V  L + G
Sbjct: 583 DVVREMIGKGFFPNPVEINLLVHSLCRDG 611



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 134/283 (47%), Gaps = 37/283 (13%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            +EA+ +L++  +   + D + Y+ ++  +C++G +  A EL+  M      PD++TY S
Sbjct: 438 GDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTS 497

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           ++ GFC  G+L+ A  + + M +H C  N V Y+  L+G+CR G    A +++   E+E 
Sbjct: 498 VLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEW 557

Query: 265 GDCSPNVVTYTSV-----------------------------------IQIFCGKGMMKE 289
              +PN +TY+ V                                   +   C  G  +E
Sbjct: 558 W--TPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPRE 615

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  +L      GCA N V  +T+I GFC + +L+ A  L+D +           Y++L+ 
Sbjct: 616 ANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALID 675

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            L +T R++EA +L  KML  G+ P  +    +I + C  G+V
Sbjct: 676 ALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRV 718



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 173/352 (49%), Gaps = 27/352 (7%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKM-PEF 158
           C + ++ Q     +++++    +GC    V    V+  LC   RL NE   +++KM  + 
Sbjct: 362 CNVHQVDQ----AMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRL-NEIRELIKKMQTDS 416

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            L PD + YN++I++  + G    A E+++    +    D + Y +++  +C  G+++ A
Sbjct: 417 KLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKA 476

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L   M   GC  ++V Y+++LDG CR+G +++A +++ +M K    C PN VTYT+ +
Sbjct: 477 KELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKH--HCKPNAVTYTTFL 534

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C  G   EA  +++  E     PN +T S ++ G   EG L+EA  ++ +++  G  
Sbjct: 535 NGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFF 594

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +    + LV  L R  + +EA +L  + +  G       C+V +        V+ GFC 
Sbjct: 595 PNPVEINLLVHSLCRDGKPREANQLLKECMNKG-------CAVNVVNFT---TVIHGFCQ 644

Query: 399 YEDIE-KIGFLSSV-------DSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +D+E  +  L  +       D+  ++ L+  L + +   EA +L   ML++
Sbjct: 645 KDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQ 696



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 6/219 (2%)

Query: 123 EGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC V+V     VI   C+K  L   A+ +L  M   +  PDT+ Y  +I    +   + 
Sbjct: 626 KGCAVNVVNFTTVIHGFCQKDDL-EAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIE 684

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A EL   M    L P  +TY S+I  +C  GR+ED   L K M     +    AY+ ++
Sbjct: 685 EATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVEDLLKLLKKMLLK--SRFQTAYNLVI 742

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           + +C+ G +E A  LLGE+ +       +  T   +++ +   G+   A  +  RM    
Sbjct: 743 EKLCKFGYLEEANSLLGEVLRTAS--RTDAKTCHVLMESYLNVGIPMSAYKVACRMFNRN 800

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
             P+      + K   VEG L+EA +L+ + V  G VS+
Sbjct: 801 LIPDLKLCEKVSKRLVVEGKLEEADRLVLRFVERGHVSA 839


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 163/336 (48%), Gaps = 9/336 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +VE   +  C  +V    VI ++CE   L  E     R++ E    P   +YN +I   C
Sbjct: 204 LVEMSNKGCCPDAVSYTTVISSMCEVG-LVKEG----RELAE-RFEPVVSVYNALINGLC 257

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++ D   A ELM+ M    + P++I+Y ++I   CN+G++E A      M + GC  N+ 
Sbjct: 258 KEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIY 317

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
             S+L+ G    G+   AL+L  +M + G    PNVV Y +++Q FC  G + +A+ +  
Sbjct: 318 TLSSLVKGCFLRGTTFDALDLWNQMIR-GFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFS 376

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            ME +GC+PN  T  +LI GF   G+LD A  + +K++  G   +   Y+++V  L R  
Sbjct: 377 HMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHS 436

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           + KEAE L   M      P     +  I+ LC  G++     ++  +E+       +   
Sbjct: 437 KFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQ-QHRCPPNIVT 495

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPY 450
           ++ LL GL + N   EA  L R +  + + W    Y
Sbjct: 496 YNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTY 531



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 131/271 (48%), Gaps = 3/271 (1%)

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           F L+P+ + YN +++ FC  G+++ A  +   M  I   P+I TY S+I GF   G L+ 
Sbjct: 346 FGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDG 405

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  ++  M   GC  N+V Y+ +++ +CR    + A  L+  M KE  +C+P+V T+ + 
Sbjct: 406 AVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKE--NCAPSVPTFNAF 463

Query: 278 IQIFCGKGMMKEALGILDRMEALG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           I+  C  G +  A  +  +ME    C PN VT + L+ G      ++EAY L  ++   G
Sbjct: 464 IKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRG 523

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
              S   Y++L+           A +L  KM+  G  PD +  +++I   C  G+     
Sbjct: 524 VEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAA 583

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
            + + +         D   ++ ++ GLCR N
Sbjct: 584 QMLDLVSCGRRKWRPDVISYTNVIWGLCRSN 614



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 139/273 (50%), Gaps = 5/273 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V    +E GC  +++    + N   K    + A+++  KM      P+ ++Y N++  
Sbjct: 372 VSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEA 431

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM-KRHGCAA 232
            C       A+ L++ M   +  P + T+ + IKG C+AGRL+ A  +F+ M ++H C  
Sbjct: 432 LCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPP 491

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N+V Y+ LLDG+ +   +E A  L  E+   G + S +  TY +++   C  G+   AL 
Sbjct: 492 NIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSS--TYNTLLHGSCNAGLPGIALQ 549

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC--YSSLVVE 350
           ++ +M   G +P+ +T++ +I  +C +G  + A Q++D V  G          Y++++  
Sbjct: 550 LVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWG 609

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           L R+   ++   L  +M+++G+ P     SV+I
Sbjct: 610 LCRSNCREDGVILLERMISAGIVPSIATWSVLI 642



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/456 (22%), Positives = 191/456 (41%), Gaps = 48/456 (10%)

Query: 39  LQKNPNNIE-KTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMY 97
           L ++PN+ E K L  VK     +CV   LH            FF   A  + ++H+   +
Sbjct: 32  LTESPNHAEIKELDVVKRLRQESCVPLALH------------FFKSIANSNLFKHTPLTF 79

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157
                   +      +  +++  K +G   S  +   + ++  +  LA  A+ +  ++ E
Sbjct: 80  EVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKE 139

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           F   P   IYN+V+     +  +     + + M      P++ TY  ++K  C   +++ 
Sbjct: 140 FGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDG 199

Query: 218 ACGLFKVMKRHGCAANLVAYS------------------------------ALLDGICRL 247
           A  L   M   GC  + V+Y+                              AL++G+C+ 
Sbjct: 200 AKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVYNALINGLCKE 259

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
              + A EL+ EM ++G   SPNV++Y+++I + C  G ++ A   L +M   GC PN  
Sbjct: 260 HDYKGAFELMREMVEKG--ISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIY 317

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAG-GSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           T+S+L+KG  + G   +A  L ++++ G G   +   Y++LV        + +A  +FS 
Sbjct: 318 TLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSH 377

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M   G  P+      +I      G +     ++  +   G   +V   +++ ++  LCR 
Sbjct: 378 MEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNV--VVYTNMVEALCRH 435

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +   EA  L   M K+      P  +  ++ L  +G
Sbjct: 436 SKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAG 471



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 9/219 (4%)

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ++    LL +M+ +G  CS ++  + SVI ++   G+ + A+ +  R++  GC P+  
Sbjct: 90  GQVDSVQYLLQQMKLQGFHCSEDL--FISVISVYRQVGLAERAVEMFYRIKEFGCDPSVK 147

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
             + ++     E  +   Y +   +   G   +   Y+ L+  L +  ++  A+KL  +M
Sbjct: 148 IYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEM 207

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  PD ++ + +I  +C  G V EG  L E  E +         +++ L+ GLC+++
Sbjct: 208 SNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPV-------VSVYNALINGLCKEH 260

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
               A +L R M++K I         ++  L  SG  EL
Sbjct: 261 DYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIEL 299


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 157/304 (51%), Gaps = 12/304 (3%)

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
           E A+LANE       M E  L P+   +N ++   C+ G +  AD L+K M     +PDI
Sbjct: 409 EAAQLANE-------MSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDI 461

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            T+  +I G+    ++E+A  +  VM  +G   ++  Y++LL+G+C+    E  +E    
Sbjct: 462 FTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKT 521

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M ++G  C+PN+ T+  +++  C    + EALG+L+ M+     P+ VT  TLI GFC  
Sbjct: 522 MVEKG--CAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKN 579

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLA 378
           G+LD AY L  K+     VSS     ++++     K  +  AEKLF +M+   + PDG  
Sbjct: 580 GDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYT 639

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
             +M+   C  G V  G+    ++ + GF+ S+ +     ++  LC ++   EAA +   
Sbjct: 640 YRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTT--LGRVINCLCVEDRVYEAAGIIHR 697

Query: 439 MLKK 442
           M++K
Sbjct: 698 MVQK 701



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 140/316 (44%), Gaps = 4/316 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ V  +M  +D  P    YN ++ +  + G    A ++   M    + PD+ ++   +
Sbjct: 94  EAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRM 153

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           K FC   R   A  L   M   GC  N+VAY  ++ G           EL G+M   G  
Sbjct: 154 KSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASG-- 211

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            S  + T+  ++++ C KG +KE   +LD++   G  PN  T +  I+G C  G LD A 
Sbjct: 212 VSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAV 271

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +++  ++  G       Y++L+  L +  + +EAE    KM+  G++PD    + +I   
Sbjct: 272 RMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGY 331

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           C GG V     +  D    GF+   D   +  L+ GLC +  +  A  L    L K I  
Sbjct: 332 CKGGMVQLAERIVGDAVFNGFVP--DQFTYRSLIDGLCHEGETNRALALFNEALGKGIKP 389

Query: 447 QGPYVDKIVEHLKKSG 462
                + +++ L   G
Sbjct: 390 NVILYNTLIKGLSNQG 405



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 159/367 (43%), Gaps = 37/367 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I+ LC+ ++   EA   L KM    L PD+  YN +I  +C KG M+   E + G  + 
Sbjct: 292 LIYGLCKNSKF-QEAEVYLGKMVNEGLEPDSYTYNTLIAGYC-KGGMVQLAERIVGDAVF 349

Query: 194 DLY-PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           + + PD  TY S+I G C+ G    A  LF      G   N++ Y+ L+ G+   G +  
Sbjct: 350 NGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILE 409

Query: 253 ALELLGEMEKEG-------------GDCS--------------------PNVVTYTSVIQ 279
           A +L  EM ++G             G C                     P++ T+  +I 
Sbjct: 410 AAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIH 469

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +  +  M+ AL ILD M   G  P+  T ++L+ G C     ++  +    +V  G   
Sbjct: 470 GYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAP 529

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   ++ L+  L R ++L EA  L  +M    V PD +    +I   C  G +   + L+
Sbjct: 530 NLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLF 589

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459
             +E+  +  S  +  +++++     K +   A KL + M+ + +   G     +V+   
Sbjct: 590 RKMEE-AYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFC 648

Query: 460 KSGDEEL 466
           K+G+  L
Sbjct: 649 KTGNVNL 655



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 144/306 (47%), Gaps = 5/306 (1%)

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           + C+ +R  + A+ +L  M       + + Y  V+  F E+       EL   M    + 
Sbjct: 155 SFCKTSR-PHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVS 213

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
             + T+  +++  C  G +++   L   + + G   NL  Y+  + G+C+ G ++ A+ +
Sbjct: 214 LCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRM 273

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           +G + ++G    P+V+TY ++I   C     +EA   L +M   G  P+  T +TLI G+
Sbjct: 274 VGCLIEQGP--KPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGY 331

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G +  A +++   V  G V     Y SL+  L        A  LF++ L  G+KP+ 
Sbjct: 332 CKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNV 391

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I+ L   G +LE   L  ++ + G +  V +   ++L+ GLC+     +A  L 
Sbjct: 392 ILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQT--FNILVNGLCKMGCVSDADGLV 449

Query: 437 RFMLKK 442
           + M+ K
Sbjct: 450 KVMISK 455



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 136/313 (43%), Gaps = 44/313 (14%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E+G +  V+   ++ N   K    ++A  +++ M      PD   +N +I  +  +  M 
Sbjct: 419 EKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKME 478

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A E++  M    + PD+ TY S++ G C   + ED    +K M   GCA NL  ++ LL
Sbjct: 479 NALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILL 538

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA-- 299
           + +CR   ++ AL LL EM+ +    +P+ VT+ ++I  FC  G +  A  +  +ME   
Sbjct: 539 ESLCRYRKLDEALGLLEEMKNK--SVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAY 596

Query: 300 ------------------------------------LGCAPNRVTISTLIKGFCVEGNLD 323
                                               LG  P+  T   ++ GFC  GN++
Sbjct: 597 KVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLG--PDGYTYRLMVDGFCKTGNVN 654

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA--CSV 381
             Y+ + +++  G + S      ++  L    R+ EA  +  +M+  G+ P+ +   C V
Sbjct: 655 LGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTICDV 714

Query: 382 MIRELCLGGQVLE 394
             +E+     VLE
Sbjct: 715 DKKEVAAPKLVLE 727



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 114/235 (48%), Gaps = 12/235 (5%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           YV  +K +   G++++A  +F+ M  + C   + +Y+A++  +   G  ++A ++   M 
Sbjct: 79  YVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMR 138

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G   +P+V ++T  ++ FC       AL +L+ M + GC  N V   T++ GF  E  
Sbjct: 139 DRG--ITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENF 196

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
             E Y+L  K++A G       ++ L+  L +   +KE EKL  K++  GV P+    ++
Sbjct: 197 KAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNL 256

Query: 382 MIRELC----LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            I+ LC    L G V    CL E   K       D   ++ L+ GLC+ +   EA
Sbjct: 257 FIQGLCQRGELDGAVRMVGCLIEQGPK------PDVITYNNLIYGLCKNSKFQEA 305



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 14/223 (6%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYK---EEGCVVSVKMMKVIFNLCEKARLAN 146
           Y ++S + N  C+ S+ +       DV+E YK   E+GC  ++    ++     + R  +
Sbjct: 497 YTYNSLL-NGLCKTSKFE-------DVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLD 548

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDIITYVSM 205
           EA+ +L +M    + PD + +  +I  FC+ GD+  A  L + M     +     TY  +
Sbjct: 549 EALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNII 608

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  F     +  A  LF+ M       +   Y  ++DG C+ G++    + L EM + G 
Sbjct: 609 IHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENG- 667

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
              P++ T   VI   C +  + EA GI+ RM   G  P  V 
Sbjct: 668 -FIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVN 709



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 116/274 (42%), Gaps = 44/274 (16%)

Query: 218 ACGLFKVMKRH-GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           A  +F  M++  G    L  Y ++++ +   G  E   E+L +M +  G+     V Y  
Sbjct: 23  ALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGV-YVG 81

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
            ++ +  KG ++EA+ + +RM+   C P   + + ++      G  D+A+++  ++   G
Sbjct: 82  AMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRG 141

Query: 337 -----------------------------SVSSGGC------YSSLVVELVRTKRLKEAE 361
                                        ++SS GC      Y ++V          E  
Sbjct: 142 ITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGY 201

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +LF KMLASGV       + ++R LC  G V E   L + + K G L ++ +  +++ + 
Sbjct: 202 ELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFT--YNLFIQ 259

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
           GLC++     A ++   +++     QGP  D I 
Sbjct: 260 GLCQRGELDGAVRMVGCLIE-----QGPKPDVIT 288


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 160/323 (49%), Gaps = 7/323 (2%)

Query: 114 IDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V    KE+G V  V     +I   C++  +  +A  +  +M    + P+  IYN ++ 
Sbjct: 633 LKVFSELKEKGLVPDVFTYSSLISGFCKQGEV-EKAFELHDEMCLKGIAPNIFIYNALVD 691

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C+ GD+  A +L  GM    L PD +TY +MI G+C +  + +A  LF  M   G   
Sbjct: 692 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQP 751

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +   Y+AL+ G C+ G ME+A+ L  EM ++G       +++ ++I  +C    ++EA  
Sbjct: 752 HSFVYNALVHGCCKEGDMEKAMNLFREMLQKG---FATTLSFNTLIDGYCKSCKIQEASQ 808

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M A    P+ VT +T+I   C  G ++EA  L  ++     +     Y+SL+    
Sbjct: 809 LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYN 868

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  +  E   LF KM+A GVKPD +   ++I   C    ++E F L +++   G L+   
Sbjct: 869 KLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTK-- 926

Query: 413 SDIHSVLLLGLCRKNHSVEAAKL 435
             IH +L+  LC++    EA+KL
Sbjct: 927 GTIHDLLITALCKREDLTEASKL 949



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 163/317 (51%), Gaps = 10/317 (3%)

Query: 128  SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            SV    +I   C+   +A EA  +  +MP   ++P + +YN ++   C++GDM  A  L 
Sbjct: 718  SVTYSTMIDGYCKSENVA-EAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLF 776

Query: 188  KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
            + M L   +   +++ ++I G+C + ++++A  LF+ M       + V Y+ ++D  C+ 
Sbjct: 777  REM-LQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKA 835

Query: 248  GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
            G ME A  L  EM++   +   + VTYTS++  +   G   E   + ++M A G  P+ V
Sbjct: 836  GKMEEANLLFKEMQER--NLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEV 893

Query: 308  TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            T   +I   C E NL EA++L D+VV  G ++ G  +  L+  L + + L EA KL  +M
Sbjct: 894  TYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEM 953

Query: 368  LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
               G+KP   AC+ ++R     G++ E   ++E ++ +G +    +      L+ L   N
Sbjct: 954  GELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTT------LIDLVNGN 1007

Query: 428  HSVEAAKLARFMLKKRI 444
             +   ++ AR ++K+ +
Sbjct: 1008 LNDTDSEDARNLIKQLV 1024



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 166/323 (51%), Gaps = 5/323 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           + G + +  +  V+ N   KA    EA+ + R++    + PD    +  I    + G + 
Sbjct: 571 DHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQ 630

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A ++   +    L PD+ TY S+I GFC  G +E A  L   M   G A N+  Y+AL+
Sbjct: 631 EALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALV 690

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG+C+ G ++RA +L   M ++G    P+ VTY+++I  +C    + EA  +   M + G
Sbjct: 691 DGLCKSGDIQRARKLFDGMPEKG--LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 748

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+    + L+ G C EG++++A  L  +++  G  ++   +++L+    ++ +++EA 
Sbjct: 749 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEAS 807

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +LF +M+A  + PD +  + +I   C  G++ E   L++++++   +  VD+  ++ L+ 
Sbjct: 808 QLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLI--VDTVTYTSLMY 865

Query: 422 GLCRKNHSVEAAKLARFMLKKRI 444
           G  +   S E   L   M+ K +
Sbjct: 866 GYNKLGQSSEVFALFEKMVAKGV 888



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 131/258 (50%), Gaps = 3/258 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   L   A  VL +M E  L P+  IY+ VI   C+ GD+  A EL + MG   L P
Sbjct: 238 LCKTGDLRG-AKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVP 296

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +  TY  +  G C A R+ +A   F+ M++ G   +  A SAL+DG  R G ++  L + 
Sbjct: 297 NTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIK 356

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M   G     N++TY  +I   C  G M++A  IL  M  LGC PN  T   LI+G+C
Sbjct: 357 DVMVSCG--IPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYC 414

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            E N+  A +L+D++     V S   Y +++  L   K L  A KL  KM  SG+KP+ +
Sbjct: 415 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 474

Query: 378 ACSVMIRELCLGGQVLEG 395
             S++I      G++ E 
Sbjct: 475 VYSILIMAYASEGRIEEA 492



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 145/296 (48%), Gaps = 4/296 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +L  M    + PD   YN +I    + G M  A   +  +    L PD +T+ + I
Sbjct: 491 EARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFI 550

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+   G++ +A   F  M  HG   N   Y+ L++G  + G++  AL +   +   G  
Sbjct: 551 LGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALG-- 608

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+V T ++ I      G ++EAL +   ++  G  P+  T S+LI GFC +G +++A+
Sbjct: 609 VLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 668

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L D++   G   +   Y++LV  L ++  ++ A KLF  M   G++PD +  S MI   
Sbjct: 669 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 728

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           C    V E F L+ ++   G      S +++ L+ G C++    +A  L R ML+K
Sbjct: 729 CKSENVAEAFSLFHEMPSKGV--QPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK 782



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 150/332 (45%), Gaps = 7/332 (2%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C+   LAN+   +L KM    L+P+ ++Y+ +I  +  +G +  A  L+ GM    + PD
Sbjct: 451 CKDLSLANK---LLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPD 507

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           I  Y ++I     AG++E+A      ++  G   + V + A + G  + G M  A +   
Sbjct: 508 IFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFD 567

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM   G    PN   YT +I      G + EAL I  R+ ALG  P+  T S  I G   
Sbjct: 568 EMLDHG--LMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLK 625

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G + EA ++  ++   G V     YSSL+    +   +++A +L  +M   G+ P+   
Sbjct: 626 NGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFI 685

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            + ++  LC  G +     L++ + + G     DS  +S ++ G C+  +  EA  L   
Sbjct: 686 YNALVDGLCKSGDIQRARKLFDGMPEKGL--EPDSVTYSTMIDGYCKSENVAEAFSLFHE 743

Query: 439 MLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           M  K +       + +V    K GD E   NL
Sbjct: 744 MPSKGVQPHSFVYNALVHGCCKEGDMEKAMNL 775



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 182/434 (41%), Gaps = 76/434 (17%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++  +  E+G V +     +I   LC   R+ NEA     +M +  L+PD    + +I 
Sbjct: 283 VELKRSMGEKGLVPNTYTYTIITAGLCRAKRM-NEAKLTFEEMQKTGLKPDYNACSALID 341

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            F  +GD+     +   M    +  ++ITY  +I G C  G++E A  + K M   GC  
Sbjct: 342 GFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKP 401

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG-------------GDC------------ 267
           N   +  L++G CR  +M RALELL EMEK               G C            
Sbjct: 402 NSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLL 461

Query: 268 --------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA---------------- 303
                    PNVV Y+ +I  +  +G ++EA  +LD M   G A                
Sbjct: 462 EKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKA 521

Query: 304 -------------------PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
                              P+ VT    I G+   G + EA +  D+++  G + +   Y
Sbjct: 522 GKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLY 581

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + L+    +   L EA  +F ++ A GV PD   CS  I  L   G+V E   ++ ++++
Sbjct: 582 TVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE 641

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD- 463
            G +  V +  +S L+ G C++    +A +L   M  K I       + +V+ L KSGD 
Sbjct: 642 KGLVPDVFT--YSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDI 699

Query: 464 ---EELITNLPKIG 474
               +L   +P+ G
Sbjct: 700 QRARKLFDGMPEKG 713



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 8/243 (3%)

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           + +  +I  +   G L++A  +F V K      +L+  ++LL  + + G ME   ++   
Sbjct: 159 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNG 218

Query: 260 M--EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
           M   K G D    V TYT ++   C  G ++ A  +L  M+  G  PN    S +I+G C
Sbjct: 219 MLDAKMGFD----VYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMC 274

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G++DEA +L   +   G V +   Y+ +   L R KR+ EA+  F +M  +G+KPD  
Sbjct: 275 QVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYN 334

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           ACS +I      G + E   + + +   G    ++   ++VL+ GLC+     +AA++ +
Sbjct: 335 ACSALIDGFMREGDIDEVLRIKDVMVSCGI--PINLITYNVLIHGLCKFGKMEKAAEILK 392

Query: 438 FML 440
            M+
Sbjct: 393 GMV 395


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 183/388 (47%), Gaps = 44/388 (11%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV-- 170
           ++V++  + +GC  ++    VI N +C + R+ ++A  +L ++  +  +PD + Y  V  
Sbjct: 207 MNVLDEMRAKGCTPNIVTYNVIINGMCREGRV-DDAKEILNRLSSYGFQPDIVSYTTVLK 265

Query: 171 ---------------------------------IRLFCEKGDMIAADELMKGMGLIDLYP 197
                                            +R FC  G +  A ++++ M      P
Sbjct: 266 GLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTP 325

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +      +I   C  GR++DA      M  +GC  + ++Y+ +L G+CR G  E A ELL
Sbjct: 326 NTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELL 385

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM ++  +C PN VT+ + I I C KG++++A+ +++ M   GC+   VT + L+ GFC
Sbjct: 386 PEMVRK--NCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFC 443

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
           V+G +D A +L + +    +  +   Y++L+  L   +RL  A +L ++M+      + +
Sbjct: 444 VQGRVDSALELFNNLPCEPNTIT---YTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAV 500

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             +V++   C  G V E   L   + + G   ++ +   + LL G+ +  +S EA +L  
Sbjct: 501 TFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLIT--FNTLLDGITKDCNSEEALELLH 558

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            ++ K + L       +V+ L +    E
Sbjct: 559 GLVSKGVSLDTITYSSVVDVLSREDRTE 586



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 160/341 (46%), Gaps = 7/341 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           + GC  SV    V+     K+    EAM VL +M      P+ + YN +I   C +G + 
Sbjct: 180 QRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 239

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A E++  +      PDI++Y +++KG C A R +D   LF  M    C  N V +  L+
Sbjct: 240 DAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLV 299

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
              CR G +ERA+++L +M + G  C+PN      VI   C +G + +A   L+ M   G
Sbjct: 300 RFFCRGGMVERAIQVLQQMSQHG--CTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYG 357

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C P+ ++ +T+++G C  G  + A +L+ ++V      +   +++ +  L +   +++A 
Sbjct: 358 CNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAI 417

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           KL   M   G     +  + ++   C+ G+V     L+ ++         ++  ++ LL 
Sbjct: 418 KLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP-----CEPNTITYTTLLT 472

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           GLC       AA+L   M++K   L     + +V    + G
Sbjct: 473 GLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKG 513



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 147/297 (49%), Gaps = 42/297 (14%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I V++   + GC  +  +  ++ N +C++ R+ ++A   L  M  +   PDTI Y  V+R
Sbjct: 312 IQVLQQMSQHGCTPNTTLCNIVINAICKQGRV-DDAYDFLNNMGMYGCNPDTISYTTVLR 370

Query: 173 LFCEKGDMIAADELM-----------------------------KGMGLIDLYPD----- 198
             C  G    A EL+                             + + LI+L P+     
Sbjct: 371 GLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSV 430

Query: 199 -IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            I+TY +++ GFC  GR++ A  LF  +    C  N + Y+ LL G+C    ++ A ELL
Sbjct: 431 GIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLDAAAELL 487

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM ++  DC  N VT+  ++  FC KG ++EA+ ++++M   GC PN +T +TL+ G  
Sbjct: 488 AEMIQK--DCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGIT 545

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
            + N +EA +L+  +V+ G       YSS+V  L R  R +EA ++   +   G++P
Sbjct: 546 KDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRP 602



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 141/282 (50%), Gaps = 11/282 (3%)

Query: 133 KVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V FN     LC+K  L  +A+ ++  MPE+      + YN ++  FC +G + +A EL 
Sbjct: 397 EVTFNTFICILCQKG-LIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELF 455

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             +      P+ ITY +++ G C+A RL+ A  L   M +  C  N V ++ L+   C+ 
Sbjct: 456 NNL---PCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQK 512

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +E A+EL+ +M + G  C+PN++T+ +++         +EAL +L  + + G + + +
Sbjct: 513 GFVEEAMELVNQMMEHG--CTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTI 570

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S+++     E   +EA Q++  V   G     G Y+ ++  L +     +A   F+ M
Sbjct: 571 TYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYM 630

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
           +++G  P+     ++I  L   G + E   +  ++   G LS
Sbjct: 631 VSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVLS 672



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 4/219 (1%)

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M + GC  ++V Y+ LL+ +C+      A+ +L EM  +G  C+PN+VTY  +I   C 
Sbjct: 177 TMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKG--CTPNIVTYNVIINGMCR 234

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
           +G + +A  IL+R+ + G  P+ V+ +T++KG C     D+   L  ++V    V +   
Sbjct: 235 EGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVT 294

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           +  LV    R   ++ A ++  +M   G  P+   C+++I  +C  G+V + +    ++ 
Sbjct: 295 FDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMG 354

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             G   + D+  ++ +L GLCR      A +L   M++K
Sbjct: 355 MYG--CNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRK 391



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 67/151 (44%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++V    E GC  ++     + +   K   + EA+ +L  +    +  DTI Y++V+ +
Sbjct: 519 MELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDV 578

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
              +     A +++  +  + + P +  Y  ++   C     + A   F  M  +GC  N
Sbjct: 579 LSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPN 638

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEG 264
              Y  L++G+   G ++ A  +L E+  +G
Sbjct: 639 ESTYIILIEGLAHEGLLKEARYVLSELYAKG 669


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 153/310 (49%), Gaps = 5/310 (1%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDIITYV 203
           A +A+ +L  M  F   PD + YN +I+ FC+  ++  A+E+   +       PD++TY 
Sbjct: 222 AEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYT 281

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           SMI G+C AG++++A  L   M R G     V ++ L+DG  + G M  A E+ G+M   
Sbjct: 282 SMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISF 341

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G  C P+VVT+TS+I  +C  G + +   + + M A G  PN  T S LI   C E  L 
Sbjct: 342 G--CFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLL 399

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +A +L+ ++ +   +     Y+ ++    +  ++ EA  +  +M     KPD +  +++I
Sbjct: 400 KARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILI 459

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
              C+ G++ E   ++  +  IG   S D    S LL  L +   + EA  L +   K +
Sbjct: 460 IGHCMKGRMFEAVSIFHKMVAIG--CSPDKITVSSLLSCLLKAGMAKEAYHLNQIAHKGQ 517

Query: 444 IWLQGPYVDK 453
           I    P   K
Sbjct: 518 INDGAPLETK 527



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 189/392 (48%), Gaps = 42/392 (10%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           +   +G RF+ ++  + + RHS + YN    ++R                          
Sbjct: 81  NNPHIGFRFWEFSRFKLNIRHSFWTYNL---LTR-------------------------- 111

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
                +LC KA + + A  +   M    + P++ +   ++  F EKG +  A  L+  + 
Sbjct: 112 -----SLC-KAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALL--LQ 163

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
             ++    +   S++       R+EDA  LF+   R     +   ++ L+ G+C +G  E
Sbjct: 164 SYEVEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAE 223

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-GCAPNRVTIS 310
           +A+ELLG M   G  C P++VTY ++I+ FC    +K+A  + D +++  GC+P+ VT +
Sbjct: 224 KAVELLGGMS--GFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYT 281

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           ++I G+C  G + EA  L+D ++  G   +   ++ LV    +   +  AE++  KM++ 
Sbjct: 282 SMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISF 341

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G  PD +  + +I   C  GQV +GF L+E++   G     ++  +S+L+  LC++N  +
Sbjct: 342 GCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFP--NAFTYSILINALCKENRLL 399

Query: 431 EAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +A +L   +  K I  Q    + +++   K+G
Sbjct: 400 KARELLGQLASKDIIPQPFMYNPVIDGFCKAG 431



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 109/243 (44%), Gaps = 11/243 (4%)

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           FK+  RH    +   Y+ L   +C+ G  + A ++   M+ +G   SPN      ++  F
Sbjct: 95  FKLNIRH----SFWTYNLLTRSLCKAGMHDLAGQMFECMKSDG--ISPNSRLLGFLVSSF 148

Query: 282 CGKGMMKEALGIL-DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
             KG +  A  +L    E  GC    + +++L+        +++A +L ++ +   S + 
Sbjct: 149 AEKGKLHCATALLLQSYEVEGCC---MVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCND 205

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ L+  L    + ++A +L   M   G  PD +  + +I+  C   ++ +   +++
Sbjct: 206 TKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFD 265

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           D++     S  D   ++ ++ G C+     EA+ L   ML+  I+      + +V+   K
Sbjct: 266 DVKSSSGCSP-DVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAK 324

Query: 461 SGD 463
           +G+
Sbjct: 325 AGE 327


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 169/333 (50%), Gaps = 7/333 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K+R +NEA  +L +M   +L+P+ ++Y N+I  F  +G+   A +++K M   
Sbjct: 193 LINGLC-KSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAA 251

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ ITY ++++G C  G+++ A  L K M R     + + Y+ +++G  R  + + A
Sbjct: 252 GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDA 311

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL EME  G   SPNV TY+ +I   C  G  ++A  +L+ M   G  PN    + LI
Sbjct: 312 FRLLSEMENAG--ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 369

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C EGN+  A ++ DK+     +    CY+SL+  L +  R++E+ K F++M   G+ 
Sbjct: 370 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLL 429

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE-A 432
           P+    S +I      G +     L + +   G      +D+  + LL    K+  +E  
Sbjct: 430 PNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKP---NDVIYIDLLESYFKSDDIEKV 486

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           +   + ML + + L       ++ +L  SG+ E
Sbjct: 487 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNME 519



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 175/374 (46%), Gaps = 23/374 (6%)

Query: 106 IKQNPSIIIDVVEAYKEEG-----CVVSVKMMKV------------IFNLCEKARLANEA 148
           +K N  +   ++  Y  EG     C +  KM KV            IF L +  R+  E+
Sbjct: 358 LKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRV-EES 416

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
                +M E  L P+   Y+ +I  + + GD+ +A++L++ M    L P+ + Y+ +++ 
Sbjct: 417 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLES 476

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           +  +  +E     FK M   G   +   Y  L+  +   G+ME A  +L E+EK G    
Sbjct: 477 YFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGS--V 534

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P+V  Y+S+I   C     ++A GILD M   G  PN V  + LI G C  G++  A  +
Sbjct: 535 PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNV 594

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            + ++A G V +   Y+SL+    +   +  A  L+++MLA+G+ PD    SV+      
Sbjct: 595 FNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSS 654

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
            G + +   L E++   G  +S+ S   + L+ G C++    E  KL   ++ + +    
Sbjct: 655 AGDLEQAMFLIEEMFLRGH-ASISS--FNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNA 711

Query: 449 PYVDKIVEHLKKSG 462
             ++ I+  L ++G
Sbjct: 712 LTIENIISGLSEAG 725



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 150/328 (45%), Gaps = 24/328 (7%)

Query: 116 VVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           V+   ++ G V  V +   +I  LC+ A    +A  +L +M +  + P+ + YN +I   
Sbjct: 524 VLSEIEKNGSVPDVHVYSSLISGLCKTAD-REKAFGILDEMSKKGVDPNIVCYNALIDGL 582

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ GD+  A  +   +    L P+ +TY S+I G C  G + +A  L+  M   G   + 
Sbjct: 583 CKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDA 642

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             YS L  G    G +E+A+ L+ EM   G     ++ ++ +++  FC +G M+E L +L
Sbjct: 643 FVYSVLTTGCSSAGDLEQAMFLIEEMFLRG---HASISSFNNLVDGFCKRGKMQETLKLL 699

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             +   G  PN +TI  +I G    G L E + +  ++    S S+   +SSL ++++  
Sbjct: 700 HVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQ 759

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            ++     +   M+    K   L  ++M+R++ +      G   Y        L+ VD+ 
Sbjct: 760 GKI--PLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSY--------LAIVDN- 808

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK 442
                   LCRK    EA  L + M K+
Sbjct: 809 --------LCRKGKLSEALNLLKEMDKR 828



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 4/242 (1%)

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G + ++  YS L++  C++   + A ++L EM + G  C  N VTY  +I   C  G ++
Sbjct: 112 GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERG--CGLNTVTYNVLIAGLCRSGAVE 169

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           EA G    ME  G  P+  T   LI G C     +EA  L+D++       +   Y++L+
Sbjct: 170 EAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLI 229

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
              +R     EA K+  +M+A+GV+P+ +    ++R LC  GQ+     L + + +    
Sbjct: 230 DGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS-- 287

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
              D+  +++++ G  R ++  +A +L   M    I         ++  L +SG+ E  +
Sbjct: 288 HRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 347

Query: 469 NL 470
           +L
Sbjct: 348 DL 349



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 11/189 (5%)

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
           L S+ RAL        + G  SP V+    ++  +   G +++A  ++  M   G AP+ 
Sbjct: 32  LASIHRALS-------DSGHRSPAVLDV--LVDTYKKSGRVQDAAEVVLMMRDRGLAPSI 82

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
              + L+K       +   +++ + +V  G       YS+L+    + +    A+K+  +
Sbjct: 83  RCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVE 142

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M   G   + +  +V+I  LC  G V E F   +D+E  G +   D   +  L+ GLC+ 
Sbjct: 143 MRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVP--DGFTYGALINGLCKS 200

Query: 427 NHSVEAAKL 435
             S EA  L
Sbjct: 201 RRSNEAKAL 209



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 35/188 (18%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTII--YNNVIRLFCEKGDMIAADELMK---GMGLI 193
           C  A    +AM+++ +M    LR    I  +NN++  FC++G M    +L+    G GL+
Sbjct: 652 CSSAGDLEQAMFLIEEM---FLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLV 708

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL-----------LD 242
              P+ +T  ++I G   AG+L +   +F  +++    +    +S+L           LD
Sbjct: 709 ---PNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLD 765

Query: 243 GI-------CRLGSMERALELLGEMEKEGGD--CSPNVVTYTSVIQIFCGKGMMKEALGI 293
            +       C+ G++++AL L   +  +     CS    +Y +++   C KG + EAL +
Sbjct: 766 VVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCS----SYLAIVDNLCRKGKLSEALNL 821

Query: 294 LDRMEALG 301
           L  M+  G
Sbjct: 822 LKEMDKRG 829



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           MI+  C  G L+ A  L  V+          +Y A++D +CR G +  AL LL EM+K  
Sbjct: 770 MIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKR- 828

Query: 265 GDCSPNVV 272
           G+  P +V
Sbjct: 829 GNLQPTLV 836


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 178/369 (48%), Gaps = 17/369 (4%)

Query: 116 VVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLR-----PDTIIYNN 169
           V+    E GC+  V     ++  LC++ R + EA+ +L  M   D R     PD + YN 
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENR-SQEALELLHMMA--DDRGGGSPPDVVSYNT 206

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           V+  F ++GD   A      M    + PD++TY S+I   C A  ++ A  +   M ++G
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              + + Y+++L G C  G  + A+  L +M  +G    PNVVTY+S++   C  G   E
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDG--VEPNVVTYSSLMNYLCKNGRSTE 324

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  I D M   G  P+  T  TL++G+  +G L E + L+D +V  G       ++ L+ 
Sbjct: 325 ARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILIC 384

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
              + +++ +A  +FSKM   G+ P+ +    +I  LC  G V +    +E +   G   
Sbjct: 385 AYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTP 444

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG----DEE 465
           ++   +++ L+ GLC  +   +A +L   ML + I L   + + I++   K G     E+
Sbjct: 445 NI--IVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 502

Query: 466 LITNLPKIG 474
           L   + +IG
Sbjct: 503 LFDLMVRIG 511



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 182/390 (46%), Gaps = 41/390 (10%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
            P   I  ++  + +G   +V     + N LC+  R + EA  +   M +  L PD   Y
Sbjct: 286 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGR-STEARKIFDSMTKRGLEPDIATY 344

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
             +++ +  KG ++    L+  M    + PD   +  +I  +    +++ A  +F  M++
Sbjct: 345 RTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQ 404

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ-------- 279
           HG   N+V Y  ++D +C+ GS++ A+    +M  EG   +PN++ YTS+I         
Sbjct: 405 HGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEG--LTPNIIVYTSLIHGLCTCDKW 462

Query: 280 -------------------IF--------CGKGMMKEALGILDRMEALGCAPNRVTISTL 312
                              IF        C +G + E+  + D M  +G  P+ +T +TL
Sbjct: 463 DKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTL 522

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G C+ G +DEA +L+  +V+ G       Y +L+    R  R+ +A  LF +M++SGV
Sbjct: 523 IDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV 582

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            P+ +  +++++ L    +      LY  I K G  + ++   ++++L GLC+ N + EA
Sbjct: 583 SPNIITYNIILQGLFHTRRTAAAKELYVSITKSG--TQLELSTYNIILHGLCKNNLTDEA 640

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            ++ + +    + L+    + ++  L K G
Sbjct: 641 LRMFQNLCLTDLQLETRTFNIMIGALLKCG 670



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 3/268 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C+ ++    +I + C++ R+  E+  +   M    ++PD I YN +I   C  G M  A 
Sbjct: 478 CLNTIFFNSIIDSHCKEGRVI-ESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEAT 536

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L+  M  + + PDI+TY ++I G+C   R++DA  LFK M   G + N++ Y+ +L G+
Sbjct: 537 KLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 596

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
                   A EL   + K G      + TY  ++   C   +  EAL +   +       
Sbjct: 597 FHTRRTAAAKELYVSITKSGTQLE--LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 654

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + +I      G +DEA  L     A G V     YS +   L+    L+E + LF
Sbjct: 655 ETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLF 714

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQV 392
             M  +G   D    + ++R+L   G +
Sbjct: 715 LSMEENGCSADSRMLNSIVRKLLQRGDI 742



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 127/264 (48%), Gaps = 15/264 (5%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P + TY  +I   C AGRL+        + + G   + + ++ LL G+C       A+++
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCAPNRVTISTLI 313
           +     E G C P+V +Y ++++  C +   +EAL +L  M      G  P+ V+ +T++
Sbjct: 150 VLRRMTELG-CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVL 208

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GF  EG+ D+AY    +++  G +     YSS++  L + + + +A ++ + M+ +GV 
Sbjct: 209 NGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVM 268

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  + ++   C  GQ  E     + +   G   +V +  +S L+  LC+   S EA 
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVT--YSSLMNYLCKNGRSTEAR 326

Query: 434 KLARFMLKK---------RIWLQG 448
           K+   M K+         R  LQG
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQG 350



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 110/264 (41%), Gaps = 9/264 (3%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-GDCSPNVVTY 274
           EDA  +F  + R G  A++   +  L  + R  S   A+     M + G G  +P V TY
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVAR-HSPAAAVSRYNRMARAGAGKVTPTVHTY 95

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI-DKVV 333
             +I   C  G +      L  +   G   + +T + L+KG C +    +A  ++  ++ 
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMT 155

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML---ASGVKPDGLACSVMIRELCLGG 390
             G +     Y++L+  L    R +EA +L   M      G  PD ++ + ++      G
Sbjct: 156 ELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEG 215

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
              + +  Y ++   G L  V +  +S ++  LC+     +A ++   M+K  +      
Sbjct: 216 DSDKAYSTYHEMLDRGILPDVVT--YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMT 273

Query: 451 VDKIVEHLKKSGD-EELITNLPKI 473
            + I+     SG  +E I  L K+
Sbjct: 274 YNSILHGYCSSGQPKEAIGTLKKM 297



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC K  L +EA+ + + +   DL+ +T  +N +I    + G M  A +L       
Sbjct: 627 ILHGLC-KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSAN 685

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ TY  M +     G LE+   LF  M+ +GC+A+    ++++  + + G + RA
Sbjct: 686 GLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRA 745


>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
 gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
          Length = 370

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 152/341 (44%), Gaps = 31/341 (9%)

Query: 5   SLSRILSSSVNIKNSKIFALHFTTASPAERFYT---------HLQKNPNNI---EKTLAT 52
           S S +L    N           T  SP E F           H + NPN     + T   
Sbjct: 30  SDSNLLEDDSNDDEEHTIKTPKTPLSPEETFVAEKLHSLIKDHYRNNPNKTLPPDPTYTI 89

Query: 53  VKAKLDSTCVIEVLHRCFPS------QSQMGIR----------FFIWAALQSSYRHSSFM 96
               LD +  I  +H   PS      +   G+R          FF WA+ Q  +  S   
Sbjct: 90  PSLSLDFSQTISTVHSISPSIIRHVIEQSGGVRHGIPVPQVLAFFNWASYQDGFDKSPEA 149

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           +N   + +   +   +   V++  K     ++V+   ++     +A LA EA+    +M 
Sbjct: 150 FNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRYVRAGLAAEAIHAFNRME 209

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           +++ +PD I ++ +I + C K     A E    +      PD+I Y ++++G+C AG + 
Sbjct: 210 DYNCKPDKIAFSILISILCRKRRASEAQEFFDSLK-DKFEPDVIVYTNLVRGWCRAGNIS 268

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           +A  +F  MK  G   N+  YS ++D +CR G + RA ++  EM   G  C PN +TY S
Sbjct: 269 EAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAG--CQPNSITYNS 326

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
           +++I    G  ++ L + ++M+ LGC P+ VT + LI+  C
Sbjct: 327 LMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHC 367



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 126/279 (45%), Gaps = 18/279 (6%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           +PSII  V+E        + V  +   FN        +++     +M +F  +       
Sbjct: 107 SPSIIRHVIEQSGGVRHGIPVPQVLAFFNWASYQDGFDKSPEAFNEMVDFAGK------- 159

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
             +R+F     +I   +LMK     D+   + T+  +++ +  AG   +A   F  M+ +
Sbjct: 160 --VRMFDLAWHVI---DLMKAR---DVEITVETFSILMRRYVRAGLAAEAIHAFNRMEDY 211

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
            C  + +A+S L+  +CR      A E    ++ +     P+V+ YT++++ +C  G + 
Sbjct: 212 NCKPDKIAFSILISILCRKRRASEAQEFFDSLKDK---FEPDVIVYTNLVRGWCRAGNIS 268

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           EA  +   M+  G  PN  T S +I   C  G +  A+ +  +++  G   +   Y+SL+
Sbjct: 269 EAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITYNSLM 328

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              V+  R ++  +++++M   G +PD +  + +I   C
Sbjct: 329 RIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETHC 367



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 93/199 (46%), Gaps = 4/199 (2%)

Query: 209 FCNAGRLED-ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           F    R+ D A  +  +MK       +  +S L+    R G    A+     ME    +C
Sbjct: 156 FAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRYVRAGLAAEAIHAFNRME--DYNC 213

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+ + ++ +I I C K    EA    D ++     P+ +  + L++G+C  GN+ EA +
Sbjct: 214 KPDKIAFSILISILCRKRRASEAQEFFDSLKD-KFEPDVIVYTNLVRGWCRAGNISEAER 272

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           +  ++   G   +   YS ++  L R  ++  A  +F++ML +G +P+ +  + ++R   
Sbjct: 273 VFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHV 332

Query: 388 LGGQVLEGFCLYEDIEKIG 406
             G+  +   +Y  ++++G
Sbjct: 333 KAGRTEKVLQVYNQMKRLG 351


>gi|56201849|dbj|BAD73299.1| fertility restorer B-like [Oryza sativa Japonica Group]
 gi|56202086|dbj|BAD73615.1| fertility restorer B-like [Oryza sativa Japonica Group]
          Length = 647

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 152/302 (50%), Gaps = 13/302 (4%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P T  YN +++  C     +  D+ ++    I   PD  +Y ++I G C  GRL +A  L
Sbjct: 270 PTTATYNVLVKAHCSDA-AVPIDDAVRVFRNIP-KPDACSYNTVIDGLCRRGRLPEARDL 327

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  M  +G A  +V Y+ L+  + R    + AL+L  EM + G    PNVVTY+S+I   
Sbjct: 328 FAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRG--IMPNVVTYSSLIDGL 385

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G    A+ +LDRM      PN +T S++I G C EG L +A +++D++   G     
Sbjct: 386 CKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDA 445

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV-------MIRELCLGGQVLE 394
           G +  L+V L    R  EA     +M  +G++P+ L  S+       ++  LC  G+V+ 
Sbjct: 446 GLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVR 505

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
            F +Y+ +   G +S+  +  H +L+  L +KN+  +AA + R ML +R   +    D I
Sbjct: 506 AFQVYQSMRTRG-ISTKPTTFH-LLVECLSKKNNLEKAAHVVRDMLSERCIPERETWDTI 563

Query: 455 VE 456
           V 
Sbjct: 564 VR 565



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 127/311 (40%), Gaps = 19/311 (6%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   R+ +   +  +++      G   +V     + +   +    ++A+ +  +M    +
Sbjct: 316 CRRGRLPEARDLFAEMIA----NGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGI 371

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + Y+++I   C+ G   +A EL+  M      P+ ITY S+I G C  G L  A  
Sbjct: 372 MPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAME 431

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT----- 275
           +   M+  G   +   +  L+ G+C  G    A   L EM   G    PN +T++     
Sbjct: 432 ILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAG--IRPNRLTWSLHGRI 489

Query: 276 --SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
             +V+   C KG +  A  +   M   G +    T   L++    + NL++A  ++  ++
Sbjct: 490 NDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAAHVVRDML 549

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKL------FSKMLASGVKPDGLACSVMIRELC 387
           +   +     + ++V      K+L+    +       +K+ A   K   ++    +  LC
Sbjct: 550 SERCIPERETWDTIVRAYWSKKKLRAVGSVQGPCAAVAKVGARNWKTGTVSEGRNLMFLC 609

Query: 388 LGGQVLEGFCL 398
           LG   L G  L
Sbjct: 610 LGDCFLHGLML 620



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG--NLDEAYQLID 330
           +YT+V+        +  A  +L  M A G AP   T + L+K  C +    +D+A ++  
Sbjct: 239 SYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFR 298

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
            +    + S    Y++++  L R  RL EA  LF++M+A+G  P  +  + +I  L    
Sbjct: 299 NIPKPDACS----YNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREA 354

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
              +   L++++ + G + +V +  +S L+ GLC+   +  A +L   M+K+R
Sbjct: 355 CFDDALKLFDEMARRGIMPNVVT--YSSLIDGLCKGGRAASAVELLDRMVKER 405


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 180/366 (49%), Gaps = 10/366 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIII-DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVL 152
           + + N  C+M R++     I  ++ + ++ +     V     +  LC+   +++ A+ V+
Sbjct: 271 NVLINGYCKMGRVEDALGYIQQEIADGFEPD----QVTYNTFVHGLCQNGHVSH-ALKVM 325

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
             M +    PD   YN VI    + G++  A  ++  M      PD  T+ ++I    + 
Sbjct: 326 DLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQ 385

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            RLE+A  L + +   G + ++  ++ L++ +C++G     + L  EM+  G  C+P+ V
Sbjct: 386 NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSG--CTPDEV 443

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TY  +I   C  G +  AL +L+ ME+ GC  + VT +T+I   C +  ++EA ++ D++
Sbjct: 444 TYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQM 503

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            A G   S   +++L+  L + KR+ +A +L  +M+  G++P+ +  + ++   C  G +
Sbjct: 504 DAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNI 563

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452
            +   + E +   GF   +D   +  L+ GLC+   +  A KL R M  K I       +
Sbjct: 564 KKAADILETMTANGF--EIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYN 621

Query: 453 KIVEHL 458
            +++ L
Sbjct: 622 PVIQSL 627



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 141/301 (46%), Gaps = 3/301 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+      +G    V    ++ N   K    +  + +  +M      PD + YN +I  
Sbjct: 392 LDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDH 451

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G +  A +L+  M         +TY ++I   C   R+E+A  +F  M   G + +
Sbjct: 452 LCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRS 511

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            V ++ L+DG+C+   ++ A EL+ +M KEG    PN +TY S++  +C +G +K+A  I
Sbjct: 512 AVTFNTLIDGLCKAKRIDDATELIEQMVKEG--LQPNNITYNSILTHYCKQGNIKKAADI 569

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L+ M A G   + VT  TLI G C  G    A +L+  +   G   +   Y+ ++  L R
Sbjct: 570 LETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFR 629

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIGFLSSVD 412
              L++A  LF +M   G  PD L   ++ R LC  GG + E F    ++   GF+    
Sbjct: 630 RNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFS 689

Query: 413 S 413
           S
Sbjct: 690 S 690



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 149/307 (48%), Gaps = 5/307 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V +  +I  LC +A     A+ +L +M    + PD   +  +++ F E+G + AA  +  
Sbjct: 198 VTLNTLIKALC-RAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKA 256

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P  +T   +I G+C  GR+EDA G  +     G   + V Y+  + G+C+ G
Sbjct: 257 KMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNG 316

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  AL+++  M +EG D  P+V TY +VI      G + EA GI+++M   GC P+  T
Sbjct: 317 HVSHALKVMDLMLQEGHD--PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTT 374

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI     +  L+EA  L  ++   G       ++ L+  L +        +LF +M 
Sbjct: 375 FNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMK 434

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           +SG  PD +  +++I  LC  G++     L  ++E  G   S  +  ++ ++  LC+K  
Sbjct: 435 SSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVT--YNTIIDALCKKMR 492

Query: 429 SVEAAKL 435
             EA ++
Sbjct: 493 IEEAEEV 499



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 176/391 (45%), Gaps = 42/391 (10%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           S  +  +R    A  +  +  SS +Y    +         ++  +V   + EG  V   +
Sbjct: 67  SDPEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVV 126

Query: 132 MKVIFNLCEKARLANEAM-WVLRKMPE--FDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           ++       + R  ++A+  VL ++    F ++ DT+++N+++ +  E   +   + +  
Sbjct: 127 VRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYN 186

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD++T  ++IK  C A ++  A  + + M  HG A +   ++ L+ G    G
Sbjct: 187 EMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEG 246

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           S+E AL +  +M + G  CSP  VT   +I  +C  G +++ALG + +  A G  P++VT
Sbjct: 247 SIEAALRVKAKMMEAG--CSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVT 304

Query: 309 ISTLIKGFCVEGN-----------------------------------LDEAYQLIDKVV 333
            +T + G C  G+                                   LDEA  +++++V
Sbjct: 305 YNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 364

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G +     +++L+V L    RL+EA  L  ++   G+ PD    +++I  LC  G   
Sbjct: 365 DRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPH 424

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            G  L+E+++  G   + D   +++L+  LC
Sbjct: 425 LGIRLFEEMKSSG--CTPDEVTYNILIDHLC 453



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 124/269 (46%), Gaps = 4/269 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D + +  ++       +L+    ++  M   G   ++V  + L+  +CR   +  A+ +L
Sbjct: 161 DTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLML 220

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM   G   +P+  T+T+++Q F  +G ++ AL +  +M   GC+P  VT++ LI G+C
Sbjct: 221 EEMSSHG--VAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYC 278

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G +++A   I + +A G       Y++ V  L +   +  A K+   ML  G  PD  
Sbjct: 279 KMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVF 338

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I  L   G++ E   +   +   G L   D+   + L++ L  +N   EA  LAR
Sbjct: 339 TYNTVINCLSKNGELDEAKGIVNQMVDRGCLP--DTTTFNTLIVALSSQNRLEEALDLAR 396

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
            +  K +       + ++  L K GD  L
Sbjct: 397 ELTVKGLSPDVYTFNILINALCKVGDPHL 425



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 98/190 (51%), Gaps = 4/190 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    +I  LC KA+  ++A  ++ +M +  L+P+ I YN+++  +C++G++  A +++
Sbjct: 512 AVTFNTLIDGLC-KAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADIL 570

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M       D++TY ++I G C AGR + A  L + M+  G      AY+ ++  + R 
Sbjct: 571 ETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRR 630

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC-GKGMMKEALGILDRMEALGCAPNR 306
            ++  AL L  EM + G    P+ +TY  V +  C G G +KEA   L  M   G  P  
Sbjct: 631 NNLRDALNLFREMTEVGE--PPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEF 688

Query: 307 VTISTLIKGF 316
            +   L +G 
Sbjct: 689 SSFRMLAEGL 698


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 153/293 (52%), Gaps = 5/293 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I N+C KA+L N+A  +  +M    + PD   YN +I  F     +  A +L   M   
Sbjct: 207 IIDNMC-KAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKE 265

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ P++ T+  ++ GFC  G++ DA  +  +M +     ++V Y++L+DG C +  + +A
Sbjct: 266 NINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKA 325

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++   M    G    NV  YT+++  FC   M+ EA+ + + M      PN VT S+LI
Sbjct: 326 KDIFDSMA--SGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLI 383

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G +  A +L+D++   G   +   YSS++  L +   + +A  L + +   G++
Sbjct: 384 DGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIR 443

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           PD    +++I+ LC  G++ +   ++ED+   G+  ++D   ++V++ G C K
Sbjct: 444 PDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGY--NLDVYAYTVMIQGFCDK 494



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 154/295 (52%), Gaps = 4/295 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A+ +  KM + ++ P+   +N ++  FC++G +  A  ++  M   D+ PD++TY S+
Sbjct: 253 NYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSL 312

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + G+C+  ++  A  +F  M   G  AN+  Y+ +++G C++  ++ A+ L  EM     
Sbjct: 313 MDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCR-- 370

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PNVVTY+S+I   C  G +  AL ++D M   G  PN VT S+++   C   ++D+A
Sbjct: 371 KIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKA 430

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L+  +   G       Y+ L+  L ++ RL++A+ +F  +L  G   D  A +VMI+ 
Sbjct: 431 IALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQG 490

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            C  G   +   L   +E  G + +  +  + +++L L  K+ +  A KL R M+
Sbjct: 491 FCDKGFFDKALALLSKMEDNGCIPNAKT--YELVILSLFEKDENDTAEKLLREMI 543



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 118/250 (47%), Gaps = 8/250 (3%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P    +  ++     A     A  L + M+ +G  ++   ++ L++   +LG    +  +
Sbjct: 59  PPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSI 118

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             ++ K+G    P  +T+ ++I+  C KG + +AL   D++ A G   ++V+  TLI G 
Sbjct: 119 FAKILKKG--YHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGL 176

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G +  A QL+ +V       +   Y+ ++  + + K + +A  L+S+M+A  + PD 
Sbjct: 177 CKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDV 236

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCRKNHSVEAAK 434
              + +I       ++     L+  ++K     +++ ++++  +L+ G C++    +A  
Sbjct: 237 FTYNALISGFSAVSKLNYAIDLFNKMKK----ENINPNVYTFNILVDGFCKEGKVNDAKV 292

Query: 435 LARFMLKKRI 444
           +   M+K  I
Sbjct: 293 VLAIMMKDDI 302



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 14/169 (8%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++ RI       + +V+   + G   ++     I +   K    ++A+ +L  + +  +
Sbjct: 387 CKLGRI----FYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGI 442

Query: 161 RPDTIIYNNVIRLFCEKGDM-----IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
           RPD   Y  +I+  C+ G +     +  D L+KG  L     D+  Y  MI+GFC+ G  
Sbjct: 443 RPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNL-----DVYAYTVMIQGFCDKGFF 497

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           + A  L   M+ +GC  N   Y  ++  +      + A +LL EM   G
Sbjct: 498 DKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRG 546


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 145/288 (50%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KV+  LC  +++   A  +  +M    L  D   Y  ++  FC+ G +  A +    M  
Sbjct: 447 KVLNYLCNASKM-ELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 505

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   P+++TY ++I  +  A ++  A  LF+ M   GC  N+V YSAL+DG C+ G +E+
Sbjct: 506 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEK 565

Query: 253 ALELLGEM------------EKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A ++   M             K+  D S  PNVVTY +++  FC    ++EA  +LD M 
Sbjct: 566 ACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMS 625

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             GC PN++    LI G C  G LDEA ++  ++   G  ++   YSSL+    + KR  
Sbjct: 626 MEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQD 685

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ SKML +   P+ +  + MI  LC  G+  E + L + +E+ G
Sbjct: 686 LASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 733



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 183/388 (47%), Gaps = 23/388 (5%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI 106
           +K L   + KL  + VIEVL     ++    I FF+WA  Q  Y+H++ +YN   ++   
Sbjct: 79  QKFLRQFREKLSESLVIEVLR--LIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVR 136

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
             +  +  + ++  +++   V  + + V+     +    + A+  L ++ +F  RP    
Sbjct: 137 DDDEKVPEEFLQQIRDDDKEVFGQFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRST 196

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +I+ F +   + +A  + + M L +L  D  T        C  G+  +A  L   ++
Sbjct: 197 YNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTL---VE 253

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
                 + V Y+ L+ G+C     E A++ L  M      C PNVVTY++++   CG  +
Sbjct: 254 TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRM--RATSCLPNVVTYSTLL---CG-CL 307

Query: 287 MKEALG----ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            K+ LG    +L+ M   GC P+    ++L+  +C  G+   AY+L+ K+V  G +    
Sbjct: 308 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYV 367

Query: 343 CYSSLVVELVRTKR------LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
            Y+ L+  +   K       L  AEK +S+MLA+GV  + +  S   R LC  G+  + F
Sbjct: 368 VYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAF 427

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            +  ++   GF+   D+  +S +L  LC
Sbjct: 428 SVIREMIGQGFIP--DTSTYSKVLNYLC 453



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 162/342 (47%), Gaps = 14/342 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+  R+++   ++    +A   EGC  +  +   + + LC+  +L +EA  V  +M E  
Sbjct: 609 CKSHRVEEARKLL----DAMSMEGCEPNQIVYDALIDGLCKVGKL-DEAQEVKTEMSEHG 663

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
                  Y+++I  + +      A +++  M      P+++ Y  MI G C  G+ ++A 
Sbjct: 664 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 723

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L ++M+  GC  N+V Y+A++DG   +G +E  LELL  M  +G   +PN VTY  +I 
Sbjct: 724 KLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKG--VAPNYVTYRVLID 781

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G +  A  +L+ M+      +      +I+GF  E    E+  L+D++    +  
Sbjct: 782 HCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDEIGQDDTAP 839

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKM--LASGVKPDGLACSVMIRELCLGGQVLEGFC 397
               Y  L+  L++ +RL+ A +L  ++   ++ +       + +I  LCL  +V   F 
Sbjct: 840 FLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQ 899

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           L+ ++ K G +  + S     L+ GL R +   EA  L  F+
Sbjct: 900 LFSEMTKKGVIPEMQS--FCSLIKGLFRNSKISEALLLLDFI 939



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 27/354 (7%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           CE S  ++     +D +   +   C+ +V     +   C   +       VL  M     
Sbjct: 272 CEASLFEE----AMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGC 327

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC------NAGR 214
            P   I+N+++  +C  GD   A +L+K M      P  + Y  +I   C      N   
Sbjct: 328 YPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDL 387

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L+ A   +  M   G   N +  S+    +C  G  E+A  ++ EM  +G    P+  TY
Sbjct: 388 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQG--FIPDTSTY 445

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + V+   C    M+ A  + + M+  G   +  T + ++  FC  G +++A +  +++  
Sbjct: 446 SKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 505

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV-- 392
            G   +   Y++L+   ++ K++  A +LF  ML+ G  P+ +  S +I   C  GQV  
Sbjct: 506 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEK 565

Query: 393 ----LEGFCLYEDIEKIG-FLSSVDSD-------IHSVLLLGLCRKNHSVEAAK 434
                E  C  +D+  +  +    D +        +  LL G C K+H VE A+
Sbjct: 566 ACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFC-KSHRVEEAR 618



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 110/251 (43%), Gaps = 8/251 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PDT+ Y  +I   CE      A + +  M      P+++TY +++ G  N  +L     +
Sbjct: 259 PDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRV 318

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
             +M   GC  +   +++L+   C  G    A +LL +M K G    P  V Y  +I   
Sbjct: 319 LNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH--MPGYVVYNILIGSI 376

Query: 282 CGK------GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           CG        ++  A      M A G   N++ +S+  +  C  G  ++A+ +I +++  
Sbjct: 377 CGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQ 436

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G +     YS ++  L    +++ A  LF +M   G+  D    ++M+   C  G + + 
Sbjct: 437 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 496

Query: 396 FCLYEDIEKIG 406
              + ++ ++G
Sbjct: 497 RKWFNEMREVG 507


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 184/375 (49%), Gaps = 39/375 (10%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + N  C   R+ +  +++  +VE  K+   +V+V  +  I  LC K R++ EA+ ++ 
Sbjct: 173 STLVNGFCLEGRVSEAVALVDRMVEM-KQRPDLVTVSTL--INGLCLKGRVS-EALVLID 228

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M E+  +PD + Y  V+   C+ G+   A +L + M   ++   ++ Y  +I   C  G
Sbjct: 229 RMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDG 288

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM------------- 260
             +DA  LF  M+  G  A++V YS+L+ G+C  G  +   ++L EM             
Sbjct: 289 SFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFS 348

Query: 261 ------EKEGG--------------DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
                  KEG                 +P+ +TY S+I  FC +  + EA  + D M + 
Sbjct: 349 ALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK 408

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GC P+ VT S LI  +C    +D+  +L  ++ + G + +   Y++LV+   ++ +L  A
Sbjct: 409 GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA 468

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           ++LF +M++ GV P  +   +++  LC  G++ +   ++E ++K      +   I+++++
Sbjct: 469 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGI--GIYNIII 526

Query: 421 LGLCRKNHSVEAAKL 435
            G+C  +   +A  L
Sbjct: 527 HGMCNASKVDDAWSL 541



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 159/317 (50%), Gaps = 5/317 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++    ++   C + R++ EA+ ++ +M E   RPD +  + +I   C KG +  A  L+
Sbjct: 169 TITFSTLVNGFCLEGRVS-EAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLI 227

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M      PD +TY  ++   C +G    A  LF+ M+     A++V YS ++D +C+ 
Sbjct: 228 DRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKD 287

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           GS + AL L  EME +G     +VVTY+S+I   C  G   +   +L  M      P+ V
Sbjct: 288 GSFDDALSLFNEMEMKG--IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVV 345

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S LI  F  EG L EA +L ++++  G       Y+SL+    +   L EA ++F  M
Sbjct: 346 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 405

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           ++ G +PD +  S++I   C   +V +G  L+ +I   G + +  +  ++ L+LG C+  
Sbjct: 406 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTIT--YNTLVLGFCQSG 463

Query: 428 HSVEAAKLARFMLKKRI 444
               A +L + M+ + +
Sbjct: 464 KLNAAKELFQEMVSRGV 480



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 137/268 (51%), Gaps = 7/268 (2%)

Query: 144 LANEAMW-----VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           L N+  W     +LR+M   ++ PD + ++ +I +F ++G ++ A EL   M    + PD
Sbjct: 319 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 378

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            ITY S+I GFC    L +A  +F +M   GC  ++V YS L++  C+   ++  + L  
Sbjct: 379 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 438

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           E+  +G    PN +TY +++  FC  G +  A  +   M + G  P+ VT   L+ G C 
Sbjct: 439 EISSKG--LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 496

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G L++A ++ +K+         G Y+ ++  +    ++ +A  LF  +   GVKPD + 
Sbjct: 497 NGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 556

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            +VMI  LC  G + E   L+  +++ G
Sbjct: 557 YNVMIGGLCKKGSLSEADMLFRKMKEDG 584



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 125/247 (50%), Gaps = 6/247 (2%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC   +    ++ N   KA+  ++ M + R++    L P+TI YN ++  FC+ G + A
Sbjct: 408 KGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA 467

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A EL + M    + P ++TY  ++ G C+ G L  A  +F+ M++      +  Y+ ++ 
Sbjct: 468 AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIH 527

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C    ++ A  L   +  +G    P+VVTY  +I   C KG + EA  +  +M+  GC
Sbjct: 528 GMCNASKVDDAWSLFCSLSDKG--VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 585

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+  T + LI+       L  + +LI+++   G  S+      +V++++  +RL   +K
Sbjct: 586 TPDDFTYNILIRAHLGGSGLISSVELIEEMKVCG-FSADSSTIKMVIDMLSDRRL---DK 641

Query: 363 LFSKMLA 369
            F  ML+
Sbjct: 642 SFLDMLS 648



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P  I +  +        + +   G  K M+ +G   ++   + +++  CR   +  A  +
Sbjct: 97  PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSV 156

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           LG   K G +  P+ +T+++++  FC +G + EA+ ++DRM  +   P+ VT+STLI G 
Sbjct: 157 LGRAWKLGYE--PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGL 214

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C++G + EA  LID++V  G       Y  ++  L ++     A  LF KM    +K   
Sbjct: 215 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 274

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  S++I  LC  G   +   L+ ++E  G  + V +  +S L+ GLC      + AK+ 
Sbjct: 275 VQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT--YSSLIGGLCNDGKWDDGAKML 332

Query: 437 RFMLKKRI 444
           R M+ + I
Sbjct: 333 REMIGRNI 340



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 118/275 (42%), Gaps = 37/275 (13%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M    + PDTI YN++I  FC++  +  A+++   M      PDI+TY  +I
Sbjct: 362 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 421

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
             +C A R++D   LF+ +   G   N + Y+ L+ G C+ G +  A EL  EM   G  
Sbjct: 422 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG-- 479

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-------------------------- 300
             P+VVTY  ++   C  G + +AL I ++M+                            
Sbjct: 480 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 539

Query: 301 ---------GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
                    G  P+ VT + +I G C +G+L EA  L  K+   G       Y+ L+   
Sbjct: 540 SLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 599

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +    L  + +L  +M   G   D     ++I  L
Sbjct: 600 LGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML 634


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 169/321 (52%), Gaps = 5/321 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+  +++ EA  +L +M ++DL P++  Y+ ++  FC +G +  A  +   M  +
Sbjct: 365 LINGYCKNGQVS-EAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRV 423

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  +++T+ S++KG C  G  EDA  ++ +M + G   + V+Y  LLD + ++G   RA
Sbjct: 424 GIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRA 483

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L L  ++   G   S     + ++I  FC    M EA    +RM+ LG  P+ VT  TLI
Sbjct: 484 LALWNDILARGYGRS--TYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLI 541

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C  GN++EA+++ +K+     + S   Y+SL+  L ++K+ +E   L S+M   G+ 
Sbjct: 542 DGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLS 601

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +    +I   C  G++ + F  Y D+ + GF  +V   I S ++  L R     EA 
Sbjct: 602 PNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNV--IICSKIVSSLYRLGRIDEAN 659

Query: 434 KLARFMLKKRIWLQGPYVDKI 454
            L + M+   ++L   Y D++
Sbjct: 660 MLLQKMVNLDVFLDHGYFDRL 680



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 147/322 (45%), Gaps = 35/322 (10%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  V  KM +  + P   +YN++I    +        +L+  M L  L P+++TY ++I
Sbjct: 552 EAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLI 611

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM------ 260
            G+C+ GRL+ A   +  M   G A N++  S ++  + RLG ++ A  LL +M      
Sbjct: 612 AGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVF 671

Query: 261 ----------EKEGGDCS-----------------PNVVTYTSVIQIFCGKGMMKEALGI 293
                     + + G+                   PN V Y   I   C  G + +A  I
Sbjct: 672 LDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKI 731

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              +   G +P+  T  TLI G+   GN+++A+ L D+++  G   +   Y++L+  L +
Sbjct: 732 FSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCK 791

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           +  L  A+KLF K+   G+ P+ ++ +++I   C  G   E   L   + K G   S+ +
Sbjct: 792 SGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLIT 851

Query: 414 DIHSVLLLGLCRKNHSVEAAKL 435
             +S L+ G C++    +A  L
Sbjct: 852 --YSALIYGFCKQGDMGKATNL 871



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 179/405 (44%), Gaps = 60/405 (14%)

Query: 78  IRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137
           + FF  A+ QS++R +    N  C++  I     +  D   +Y  E    S         
Sbjct: 78  LHFFKLASKQSNFRPN---VNSHCKLVHILSRARMY-DETRSYLNELVTPS--------- 124

Query: 138 LCEKARLANEAMW--VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG---- 191
              K   ++  +W  ++R   +F   P   +++ +++++CEKG +  A  +   MG    
Sbjct: 125 ---KNNYSSLVVWNELVRVFEDFKFSP--TVFDMILKIYCEKGMIKNALHVFDNMGKLGC 179

Query: 192 -------------------------------LIDLYPDIITYVSMIKGFCNAGRLEDACG 220
                                           + + PD+ T   M+  +C  G +  A  
Sbjct: 180 VPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVAVD 239

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
             K M   G   N+V Y++L+DG   +G MERA  +L  M + G     N VT T +I+ 
Sbjct: 240 FVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERG--ILRNKVTLTLLIKG 297

Query: 281 FCGKGMMKEALGILDRME-ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
           +C +  ++EA  +L  ME + G   +      LI G+C    +D+A +L D+++  G   
Sbjct: 298 YCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRM 357

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +    ++L+    +  ++ EAE+L  +M+   ++P+  + S ++   C  G V +   +Y
Sbjct: 358 NLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVY 417

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            ++ ++G  S+V +  H+ LL GLCR     +A  +   MLK+ +
Sbjct: 418 NEMLRVGIQSNVVT--HNSLLKGLCRVGAFEDALHVWHLMLKRGV 460



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 141/330 (42%), Gaps = 47/330 (14%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V E  ++E  + S+++   +     K++   E M +L +M    L P+ + Y  +I  +C
Sbjct: 556 VKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWC 615

Query: 176 EKGDMIAA-----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR--- 227
           ++G +  A     D + KG       P++I    ++      GR+++A  L + M     
Sbjct: 616 DEGRLDKAFTAYFDMIEKGFA-----PNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDV 670

Query: 228 ---HG-----------------------------CAANLVAYSALLDGICRLGSMERALE 255
              HG                                N V Y+  + G+C+ G ++ A +
Sbjct: 671 FLDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKK 730

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           +   +   G   SP+  TY ++I  +   G + +A  + D M   G APN +T + LI G
Sbjct: 731 IFSSLLLRG--FSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALING 788

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C  GNLD A +L DK+   G   +   Y+ L+    +    +EA  L +KML  G+ P 
Sbjct: 789 LCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPS 848

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
            +  S +I   C  G + +   L +++ ++
Sbjct: 849 LITYSALIYGFCKQGDMGKATNLLDEMREL 878



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 76/141 (53%), Gaps = 4/141 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A  +  +M +  L P+ I YN +I   C+ G++  A +L   + L  L P++I+Y  +
Sbjct: 761 NDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNIL 820

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G+C  G   +A  L   M + G + +L+ YSAL+ G C+ G M +A  LL EM +   
Sbjct: 821 IDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFA 880

Query: 266 DCSPNVVTYTSVIQ--IFCGK 284
           D   N+  +  +++  + CG+
Sbjct: 881 D--QNIAKFVKLVEGHVKCGE 899


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 168/335 (50%), Gaps = 16/335 (4%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F++N+A E           + +V+   + GC  ++    V+ N LC++    + A+ 
Sbjct: 160 HGLFLHNKASEA----------VALVDRMVQRGCQPNLVTYGVVVNGLCKRGD-TDLALN 208

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L KM    +  D +I+N +I   C+   +  A  L K M    + P+++TY S+I   C
Sbjct: 209 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLC 268

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           + GR  DA  L   M       NLV ++AL+D   + G    A +L  +M K   D  P+
Sbjct: 269 SYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID--PD 326

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY S++  FC    + +A  + + M +  C P+ VT +TLIKGFC    +++  +L  
Sbjct: 327 IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR 386

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V     Y++L+  L        A+K+F +M++ GV PD +  S+++  LC  G
Sbjct: 387 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 446

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           ++ +   +++ ++K      +D  I++ ++ G+C+
Sbjct: 447 KLEKALEVFDYMQKSEI--KLDIYIYTTMIEGMCK 479



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 182/359 (50%), Gaps = 11/359 (3%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++ +EA K E  VV      +I +LC K R  ++A+ + ++M    +RP+ + Y+++I 
Sbjct: 209 LLNKMEAAKIEADVVIFN--TIIDSLC-KYRHVDDALNLFKEMETKGIRPNVVTYSSLIS 265

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G    A +L+  M    + P+++T+ ++I  F   G+  +A  L+  M +     
Sbjct: 266 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP 325

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++  Y++L++G C    +++A ++   M  +  DC P+VVTY ++I+ FC    +++   
Sbjct: 326 DIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK--DCFPDVVTYNTLIKGFCKSKRVEDGTE 383

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M   G   + VT +TLI+G   +G+ D A ++  ++V+ G       YS L+  L 
Sbjct: 384 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 443

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              +L++A ++F  M  S +K D    + MI  +C  G+V +G+ L+  +   G   +V 
Sbjct: 444 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 503

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK-RIWLQGPYVDKIVEHLK---KSGDEELI 467
           +  ++ ++ GLC K    EA  L + M +   +   G Y   I  HL+   K+   ELI
Sbjct: 504 T--YNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELI 560



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 5/312 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V +  ++   C   R++ +A+ ++ +M E   RPDTI +  +I           A  L+ 
Sbjct: 118 VTLSSLLNGYCHGKRIS-DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVD 176

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P+++TY  ++ G C  G  + A  L   M+     A++V ++ ++D +C+  
Sbjct: 177 RMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYR 236

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ AL L  EME +G    PNVVTY+S+I   C  G   +A  +L  M      PN VT
Sbjct: 237 HVDDALNLFKEMETKG--IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 294

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + LI  F  EG   EA +L D ++          Y+SLV       RL +A+++F  M+
Sbjct: 295 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMV 354

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           +    PD +  + +I+  C   +V +G  L+ ++   G +   D+  ++ L+ GL     
Sbjct: 355 SKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG--DTVTYTTLIQGLFHDGD 412

Query: 429 SVEAAKLARFML 440
              A K+ + M+
Sbjct: 413 CDNAQKVFKQMV 424



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 166/362 (45%), Gaps = 22/362 (6%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
            ++I + E  +    V  +    ++ N  C +++++  A+ +L KM +    P  +  ++
Sbjct: 64  DVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQIS-LALALLGKMMKLGYEPSIVTLSS 122

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           ++  +C    +  A  L+  M  +   PD IT+ ++I G     +  +A  L   M + G
Sbjct: 123 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 182

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           C  NLV Y  +++G+C+ G  + AL LL +M  E      +VV + ++I   C    + +
Sbjct: 183 CQPNLVTYGVVVNGLCKRGDTDLALNLLNKM--EAAKIEADVVIFNTIIDSLCKYRHVDD 240

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           AL +   ME  G  PN VT S+LI   C  G   +A QL+  ++      +   +++L+ 
Sbjct: 241 ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALID 300

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK----I 405
             V+  +  EAEKL+  M+   + PD    + ++           GFC+++ ++K     
Sbjct: 301 AFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLV----------NGFCMHDRLDKAKQMF 350

Query: 406 GFLSSVD--SDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
            F+ S D   D+  ++ L+ G C+     +  +L R M  + +         +++ L   
Sbjct: 351 EFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHD 410

Query: 462 GD 463
           GD
Sbjct: 411 GD 412



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 137/286 (47%), Gaps = 10/286 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + +N ++    +         L + M  +++   + TY  +I  FC   ++  A  L
Sbjct: 45  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 104

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M + G   ++V  S+LL+G C    +  A+ L+ +M + G    P+ +T+T++I   
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG--YRPDTITFTTLIHGL 162

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
                  EA+ ++DRM   GC PN VT   ++ G C  G+ D A  L++K+ A    +  
Sbjct: 163 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADV 222

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             +++++  L + + + +A  LF +M   G++P+ +  S +I  LC  G+  +   L  D
Sbjct: 223 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 282

Query: 402 -IEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            IEK      ++ ++   + L+    ++   VEA KL   M+K+ I
Sbjct: 283 MIEK-----KINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 323



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 128/278 (46%), Gaps = 39/278 (14%)

Query: 202 YVSMIKGFCNAGRLEDACGLF-----------------------------------KVMK 226
           Y  +++   +  +L+DA GLF                                   + M+
Sbjct: 15  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 74

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           R      L  Y+ L++  CR   +  AL LLG+M K G +  P++VT +S++  +C    
Sbjct: 75  RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYE--PSIVTLSSLLNGYCHGKR 132

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + +A+ ++D+M  +G  P+ +T +TLI G  +     EA  L+D++V  G   +   Y  
Sbjct: 133 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 192

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           +V  L +      A  L +KM A+ ++ D +  + +I  LC    V +   L++++E  G
Sbjct: 193 VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 252

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
              +V +  +S L+  LC      +A++L   M++K+I
Sbjct: 253 IRPNVVT--YSSLISCLCSYGRWSDASQLLSDMIEKKI 288


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 184/375 (49%), Gaps = 39/375 (10%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + N  C   R+ +  +++  +VE  K+   +V+V  +  I  LC K R++ EA+ ++ 
Sbjct: 144 STLVNGFCLEGRVSEAVALVDRMVEM-KQRPDLVTVSTL--INGLCLKGRVS-EALVLID 199

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M E+  +PD + Y  V+   C+ G+   A +L + M   ++   ++ Y  +I   C  G
Sbjct: 200 RMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDG 259

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM------------- 260
             +DA  LF  M+  G  A++V YS+L+ G+C  G  +   ++L EM             
Sbjct: 260 SFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFS 319

Query: 261 ------EKEGG--------------DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
                  KEG                 +P+ +TY S+I  FC +  + EA  + D M + 
Sbjct: 320 ALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK 379

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GC P+ VT S LI  +C    +D+  +L  ++ + G + +   Y++LV+   ++ +L  A
Sbjct: 380 GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA 439

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           ++LF +M++ GV P  +   +++  LC  G++ +   ++E ++K      +   I+++++
Sbjct: 440 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGI--GIYNIII 497

Query: 421 LGLCRKNHSVEAAKL 435
            G+C  +   +A  L
Sbjct: 498 HGMCNASKVDDAWSL 512



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 159/317 (50%), Gaps = 5/317 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++    ++   C + R++ EA+ ++ +M E   RPD +  + +I   C KG +  A  L+
Sbjct: 140 TITFSTLVNGFCLEGRVS-EAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLI 198

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M      PD +TY  ++   C +G    A  LF+ M+     A++V YS ++D +C+ 
Sbjct: 199 DRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKD 258

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           GS + AL L  EME +G     +VVTY+S+I   C  G   +   +L  M      P+ V
Sbjct: 259 GSFDDALSLFNEMEMKG--IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVV 316

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S LI  F  EG L EA +L ++++  G       Y+SL+    +   L EA ++F  M
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           ++ G +PD +  S++I   C   +V +G  L+ +I   G + +  +  ++ L+LG C+  
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTIT--YNTLVLGFCQSG 434

Query: 428 HSVEAAKLARFMLKKRI 444
               A +L + M+ + +
Sbjct: 435 KLNAAKELFQEMVSRGV 451



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 137/268 (51%), Gaps = 7/268 (2%)

Query: 144 LANEAMW-----VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           L N+  W     +LR+M   ++ PD + ++ +I +F ++G ++ A EL   M    + PD
Sbjct: 290 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 349

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            ITY S+I GFC    L +A  +F +M   GC  ++V YS L++  C+   ++  + L  
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 409

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           E+  +G    PN +TY +++  FC  G +  A  +   M + G  P+ VT   L+ G C 
Sbjct: 410 EISSKG--LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 467

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G L++A ++ +K+         G Y+ ++  +    ++ +A  LF  +   GVKPD + 
Sbjct: 468 NGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 527

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            +VMI  LC  G + E   L+  +++ G
Sbjct: 528 YNVMIGGLCKKGSLSEADMLFRKMKEDG 555



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 125/247 (50%), Gaps = 6/247 (2%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC   +    ++ N   KA+  ++ M + R++    L P+TI YN ++  FC+ G + A
Sbjct: 379 KGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA 438

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A EL + M    + P ++TY  ++ G C+ G L  A  +F+ M++      +  Y+ ++ 
Sbjct: 439 AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIH 498

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C    ++ A  L   +  +G    P+VVTY  +I   C KG + EA  +  +M+  GC
Sbjct: 499 GMCNASKVDDAWSLFCSLSDKG--VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 556

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+  T + LI+       L  + +LI+++   G  S+      +V++++  +RL   +K
Sbjct: 557 TPDDFTYNILIRAHLGGSGLISSVELIEEMKVCG-FSADSSTIKMVIDMLSDRRL---DK 612

Query: 363 LFSKMLA 369
            F  ML+
Sbjct: 613 SFLDMLS 619



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P  I +  +        + +   G  K M+ +G   ++   + +++  CR   +  A  +
Sbjct: 68  PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSV 127

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           LG   K G +  P+ +T+++++  FC +G + EA+ ++DRM  +   P+ VT+STLI G 
Sbjct: 128 LGRAWKLGYE--PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGL 185

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C++G + EA  LID++V  G       Y  ++  L ++     A  LF KM    +K   
Sbjct: 186 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 245

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  S++I  LC  G   +   L+ ++E  G  + V +  +S L+ GLC      + AK+ 
Sbjct: 246 VQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT--YSSLIGGLCNDGKWDDGAKML 303

Query: 437 RFMLKKRI 444
           R M+ + I
Sbjct: 304 REMIGRNI 311



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 121/275 (44%), Gaps = 37/275 (13%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M    + PDTI YN++I  FC++  +  A+++   M      PDI+TY  +I
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 392

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
             +C A R++D   LF+ +   G   N + Y+ L+ G C+ G +  A EL  EM   G  
Sbjct: 393 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG-- 450

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRME---------------------------- 298
             P+VVTY  ++   C  G + +AL I ++M+                            
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510

Query: 299 ALGCA-------PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
           +L C+       P+ VT + +I G C +G+L EA  L  K+   G       Y+ L+   
Sbjct: 511 SLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAH 570

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +    L  + +L  +M   G   D     ++I  L
Sbjct: 571 LGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML 605


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 140/279 (50%), Gaps = 8/279 (2%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           D +P+ + Y  +++  C  G +  A   +  M    L PD+ TY  +I   C A R+  A
Sbjct: 5   DCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRA 64

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
              F+ M       ++V Y+ LL G+C+ G + +A  L G ME  G   +P+ VTYT++I
Sbjct: 65  IEFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSME--GAGITPSDVTYTTLI 118

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
            +FC     + A G+L  M +  C+P   +  ++I G C    +D+AYQL +++   G  
Sbjct: 119 DVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCK 178

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y++L+  L   +RL EA+ L + M+ +  +PD +  + +I  LC   ++ E F L
Sbjct: 179 PDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVL 238

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           ++ + K G   + D   H+VL+  LC +     A  + R
Sbjct: 239 FQGMAKQG--CAPDLVTHTVLVSKLCIRRKLRPALSVVR 275



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 126/251 (50%), Gaps = 7/251 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   ++ ++A   + +M    L PD   YN VI   C+   +  A E  + M      P
Sbjct: 20  LCRTGKI-DKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMP----EP 74

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D++TY +++ G C  GR+  AC LF  M+  G   + V Y+ L+D  C++   E A  LL
Sbjct: 75  DVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLL 134

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M      CSP V +Y S+I   C    + +A  + + M+  GC P+RVT +TLI G C
Sbjct: 135 QLMASR--KCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLC 192

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
           V+  L EA  L+  +V          +++L+  L  T R+KEA  LF  M   G  PD +
Sbjct: 193 VKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLV 252

Query: 378 ACSVMIRELCL 388
             +V++ +LC+
Sbjct: 253 THTVLVSKLCI 263



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 173/411 (42%), Gaps = 49/411 (11%)

Query: 95  FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           ++    C   +I +  S I ++      E  V  V    V+ +   KAR  + A+     
Sbjct: 15  YLVKALCRTGKIDKACSTIAEMAR----EKLVPDVFTYNVVIDTLCKARRISRAIEFFET 70

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           MPE    PD + YN ++   C+ G +  A  L   M    + P  +TY ++I  FC   +
Sbjct: 71  MPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQ 126

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            E A GL ++M    C+  + +Y ++++G+C+   +++A +L  EM+  G  C P+ VTY
Sbjct: 127 FETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAG--CKPDRVTY 184

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            ++I   C K  + EA  +L  M      P+++T + LI+G C    + EA+ L   +  
Sbjct: 185 NTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAK 244

Query: 335 GGSVSS---------------------------GGC------YSSLVVELVRTKRLKEAE 361
            G                                 C      Y+ +  EL R +    A 
Sbjct: 245 QGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAA 304

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVL 419
           +L  KM   GV P+ +  +   + L   G   EG   Y +  ++     ++ D+  ++VL
Sbjct: 305 RLLQKMARRGVAPNVVTYTAFFKGL---GDWKEGMRAYREFRRM-LEQGIEPDMVAYNVL 360

Query: 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           + G C+ N    A K+ R+M +  +       + +V H  + G  E I  L
Sbjct: 361 VDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGEL 411



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 132/295 (44%), Gaps = 42/295 (14%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K R  ++A  +  +M     +PD + YN +I   C K  +  A +L+  M   
Sbjct: 152 IINGLC-KNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVEN 210

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC-------- 245
              PD IT+ ++I+G C   R+++A  LF+ M + GCA +LV ++ L+  +C        
Sbjct: 211 SFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPA 270

Query: 246 -------------------------RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
                                    R    +RA  LL +M + G   +PNVVTYT+    
Sbjct: 271 LSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRG--VAPNVVTYTA---F 325

Query: 281 FCGKGMMKEALGI---LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           F G G  KE +       RM   G  P+ V  + L+ GFC    LD A +++  +   G 
Sbjct: 326 FKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGL 385

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
             +   Y++LV    R  +++   +L   M++ G +PD    S ++  L   GQV
Sbjct: 386 PPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQV 440



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 58/113 (51%)

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
            R+M E  + PD + YN ++  FC+   +  A+++++ M    L P+I+TY +++   C 
Sbjct: 342 FRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCR 401

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
            G++E    L   M   G   ++  +S L+ G+ R+G ++ A   L     +G
Sbjct: 402 KGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQVDAAYSFLNLAMSQG 454



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C+  RL + A  ++R M +  L P+ + YN ++   C KG + A  EL+  M      P
Sbjct: 364 FCKANRL-DMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQP 422

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           D+ T+ +++ G    G+++ A     +    G
Sbjct: 423 DVATWSTLVAGLFRVGQVDAAYSFLNLAMSQG 454


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 149/298 (50%), Gaps = 6/298 (2%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           D+V      GC  +V    ++ N   KA L  EA  VL +M    L  +++IYN +I   
Sbjct: 411 DLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICAL 470

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C K  +  A  L+  M      PD+ TY S+I G C   R+++A  LF  M   G  AN 
Sbjct: 471 CRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANN 530

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V Y+ L+  + R G+ ++AL L+ +M   G  C+ + +TY  +I+ FC  G +++ L + 
Sbjct: 531 VTYNTLIHALLRRGAFQKALTLVNDMLFRG--CTLDKITYNGLIKAFCKVGNIEKGLELY 588

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           ++M   G   + ++ + +I G C  G +D A++ +   +  G V     Y+S++  L + 
Sbjct: 589 EQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKV 648

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL--YEDIEKIGFLSS 410
            R+KEA  LF ++   GV+PD    +  I   C  G V +  CL  Y  IE  GF+ S
Sbjct: 649 GRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDA-CLFFYRGIEN-GFVPS 704



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 156/341 (45%), Gaps = 11/341 (3%)

Query: 95  FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           F+ +  C + ++ +   I+I +        C  +  +  +I       +L     ++   
Sbjct: 328 FLLHGLCRIGKLNEARKILIKI-------PCPNNAILNTLINGYVMSGQLKEAQSFLNET 380

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M  F  +PD   YN ++   C++G +  A +L+  M      P++ITY  ++ G C AG 
Sbjct: 381 MINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGL 440

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           LE+A  +   M   G   N V Y+ L+  +CR   +  AL LL EM  +G  C P++ TY
Sbjct: 441 LEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKG--CKPDLFTY 498

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            S+I   C    + EA  +   M   G   N VT +TLI      G   +A  L++ ++ 
Sbjct: 499 NSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLF 558

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y+ L+    +   +++  +L+ +M+  G+  D ++C++MI  LC  G+V  
Sbjct: 559 RGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDN 618

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            F    D    GF+  + +  ++ +L GLC+     EA  L
Sbjct: 619 AFEFLRDAINRGFVPDIVT--YNSVLNGLCKVGRIKEALNL 657



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 164/344 (47%), Gaps = 7/344 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           + GCV +  + + + +   +    +EA+ +L +M      PD   +N+VI   C+   + 
Sbjct: 246 KHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIH 305

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L+  M L   YPD +TY  ++ G C  G+L +A    K++ +  C  N +  + L+
Sbjct: 306 DATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEA---RKILIKIPCPNNAIL-NTLI 361

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G    G ++ A   L E     G   P++ TY  ++   C +G +  A  +++ M   G
Sbjct: 362 NGYVMSGQLKEAQSFLNETMINFG-FQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRG 420

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C PN +T + L+ G C  G L+EA  ++ ++ A G   +   Y+ L+  L R +++  A 
Sbjct: 421 CEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVAL 480

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
            L S+M   G KPD    + +I  LC   ++ E F L+ ++   G  +  ++  ++ L+ 
Sbjct: 481 NLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG--AVANNVTYNTLIH 538

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            L R+    +A  L   ML +   L     + +++   K G+ E
Sbjct: 539 ALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIE 582



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 129/263 (49%), Gaps = 6/263 (2%)

Query: 93  SSFMYN-RACEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMW 150
           +S +YN   C + R K+   + ++++     +GC   +     +I+ LC+  R+ +EA  
Sbjct: 459 NSVIYNCLICALCR-KEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRI-DEAFR 516

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +   M       + + YN +I     +G    A  L+  M       D ITY  +IK FC
Sbjct: 517 LFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFC 576

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G +E    L++ M   G  A+ ++ + +++G+C++G ++ A E L +    G    P+
Sbjct: 577 KVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRG--FVPD 634

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           +VTY SV+   C  G +KEAL + DR++  G  P+  T +T I   C EG +++A     
Sbjct: 635 IVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFY 694

Query: 331 KVVAGGSVSSGGCYSSLVVELVR 353
           + +  G V S   ++ LV  L++
Sbjct: 695 RGIENGFVPSNLTWNVLVYTLLK 717



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 161/353 (45%), Gaps = 18/353 (5%)

Query: 87  QSSYRHSSFMY----NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142
           Q  Y H+  +Y    N+   + + K    +I  ++   KEEG V    +  +I     KA
Sbjct: 105 QKGYCHTFDVYYVFINKLGAIGKFK----LIDKLLMQMKEEGIVFRESIFMIIMKHYGKA 160

Query: 143 RLANEAMWVLRKMPEFDL-RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
               +A+ +L  M    L  P    Y+ V+ +         A  +   M    + P + T
Sbjct: 161 GQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFT 220

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           +  ++K  C    ++ AC L + M +HGC  N + Y  L+  + +   +  AL+LL EM 
Sbjct: 221 FGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMF 280

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G  C P+V T+  VI   C    + +A  ++DRM   G  P+ +T   L+ G C  G 
Sbjct: 281 VMG--CMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGK 338

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK-MLASGVKPDGLACS 380
           L+EA +++ K+       +    ++L+   V + +LKEA+   ++ M+  G +PD    +
Sbjct: 339 LNEARKILIKI----PCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYN 394

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           +++  LC  G +     L  ++ + G   +V +  +++L+ GLC+     EA 
Sbjct: 395 ILMHGLCKEGSLSFARDLVNEMSRRGCEPNVIT--YAILVNGLCKAGLLEEAG 445



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 89/170 (52%), Gaps = 2/170 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D I YN +I+ FC+ G++    EL + M +  L  D I+   MI G C  G++++A    
Sbjct: 564 DKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFL 623

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           +     G   ++V Y+++L+G+C++G ++ AL L   ++ EG    P+  TY + I   C
Sbjct: 624 RDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEG--VRPDAFTYNTFISWQC 681

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
            +GM+ +A     R    G  P+ +T + L+     + N +  + ++D++
Sbjct: 682 KEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFFVLDEL 731



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 3/235 (1%)

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            Y   I      G+ +    L   MK  G       +  ++    + G   +A+ LL +M
Sbjct: 114 VYYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDM 173

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            +    C P   +Y  V++I       + A  +   M + G +P   T   ++K  C+  
Sbjct: 174 -RAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFN 232

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            +D A  L+  +   G V +   Y +L+  L +  ++ EA KL  +M   G  PD    +
Sbjct: 233 EVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFN 292

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +I  LC   ++ +   L + +   GF    D+  +  LL GLCR     EA K+
Sbjct: 293 DVIHGLCKVNKIHDATKLVDRMLLRGFYP--DNMTYGFLLHGLCRIGKLNEARKI 345



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 13/189 (6%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSI--------IIDVVEAYKE---EGCVVSVKMM 132
            A Q +    + M  R C + +I  N  I        I   +E Y++   +G        
Sbjct: 544 GAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISC 603

Query: 133 KVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
            ++ N LC+  ++ N A   LR        PD + YN+V+   C+ G +  A  L   + 
Sbjct: 604 NIMINGLCKVGKVDN-AFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQ 662

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           +  + PD  TY + I   C  G + DAC  F     +G   + + ++ L+  + +  + E
Sbjct: 663 VEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQE 722

Query: 252 RALELLGEM 260
               +L E+
Sbjct: 723 NNFFVLDEL 731


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 141/264 (53%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   ++++A  LF  M  +G   N V ++ L+DG C+ G ++ A+E+  ++  +G   
Sbjct: 215 GLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQG--F 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M      P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+   ML+ G+KPD    +++I E C
Sbjct: 333 YRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V  G  L +++ + G +  V
Sbjct: 393 KKGDVKTGSKLLKEMXRDGHVPCV 416



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 5/269 (1%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+++ L+ G  RLG ++   
Sbjct: 132 YPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGF 191

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M EA  + + M   G  PN VT +TLI 
Sbjct: 192 RLKSAMHASG--VQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLID 249

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++ G       Y++L+  L +   LK+A  L  +M    +KP
Sbjct: 250 GHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKP 309

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  + +I   C  G +   F   + + K      +D   ++ L+ GLC++  SV+A K
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFEYRKRMIKENI--RLDDVAYTALISGLCQEGRSVDAEK 367

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           + R ML   +         I+    K GD
Sbjct: 368 MLRGMLSVGLKPDNGTYTMIINEFCKKGD 396



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++ +   +  ++++     G V + V    +I   C+  
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDEANELFNEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + +++      PD I YN +I   C+KGD+  A +L+  M + +L PD ITY
Sbjct: 256 RV-DLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE A    K M +     + VAY+AL+ G+C+ G    A ++L  M  
Sbjct: 315 TTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLS 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P+  TYT +I  FC KG +K    +L  M   G  P  VT
Sbjct: 375 VG--LKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHVPCVVT 418



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 128/270 (47%), Gaps = 8/270 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G + DA   F++ + H           +L+ + +L    +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               KE  +C    ++  +  ++  FC +G M+ A  + D +   G  P+ V+ +TL+ G
Sbjct: 121 WGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSG 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   + A G       YS L+  L +  ++ EA +LF++ML +G+ P+
Sbjct: 181 YIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +   GF  S D   ++ L+ GLC+K    +A  L
Sbjct: 241 GVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGF--SPDLITYNTLIFGLCKKGDLKQARDL 298

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
              M  K +         +++   K GD E
Sbjct: 299 IDEMSMKELKPDKITYTTLIDGSCKEGDLE 328



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 4/221 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A    G    V    V+ N LC+++++ +EA  +  +M +  L P+ + +  +I   C+ 
Sbjct: 196 AMHASGVQPDVYTYSVLINGLCKESKM-DEANELFNEMLDNGLVPNGVTFTTLIDGHCKN 254

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K +      PD+ITY ++I G C  G L+ A  L   M       + + Y
Sbjct: 255 GRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITY 314

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G +E A E    M KE  +   + V YT++I   C +G   +A  +L  M
Sbjct: 315 TTLIDGSCKEGDLETAFEYRKRMIKE--NIRLDDVAYTALISGLCQEGRSVDAEKMLRGM 372

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
            ++G  P+  T + +I  FC +G++    +L+ ++   G V
Sbjct: 373 LSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHV 413


>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
          Length = 571

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 152/302 (50%), Gaps = 13/302 (4%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P T  YN +++  C     +  D+ ++    I   PD  +Y ++I G C  GRL +A  L
Sbjct: 171 PTTATYNVLVKAHCSDA-AVPIDDAVRVFRNIP-KPDACSYNTVIDGLCRRGRLPEARDL 228

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  M  +G A  +V Y+ L+  + R    + AL+L  EM + G    PNVVTY+S+I   
Sbjct: 229 FAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRG--IMPNVVTYSSLIDGL 286

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G    A+ +LDRM      PN +T S++I G C EG L +A +++D++   G     
Sbjct: 287 CKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDA 346

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV-------MIRELCLGGQVLE 394
           G +  L+V L    R  EA     +M  +G++P+ L  S+       ++  LC  G+V+ 
Sbjct: 347 GLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVR 406

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
            F +Y+ +   G +S+  +  H +L+  L +KN+  +AA + R ML +R   +    D I
Sbjct: 407 AFQVYQSMRTRG-ISTKPTTFH-LLVECLSKKNNLEKAAHVVRDMLSERCIPERETWDTI 464

Query: 455 VE 456
           V 
Sbjct: 465 VR 466



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 111/265 (41%), Gaps = 13/265 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   R+ +   +  +++      G   +V     + +   +    ++A+ +  +M    +
Sbjct: 217 CRRGRLPEARDLFAEMIA----NGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGI 272

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + Y+++I   C+ G   +A EL+  M      P+ ITY S+I G C  G L  A  
Sbjct: 273 MPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAME 332

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT----- 275
           +   M+  G   +   +  L+ G+C  G    A   L EM   G    PN +T++     
Sbjct: 333 ILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAG--IRPNRLTWSLHGRI 390

Query: 276 --SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
             +V+   C KG +  A  +   M   G +    T   L++    + NL++A  ++  ++
Sbjct: 391 NDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAAHVVRDML 450

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLK 358
           +   +     + ++V      K+L+
Sbjct: 451 SERCIPERETWDTIVRAYWSKKKLR 475



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 8/192 (4%)

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG--NLDEAYQLID 330
           +YT+V+        +  A  +L  M A G AP   T + L+K  C +    +D+A ++  
Sbjct: 140 SYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFR 199

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
            +    + S    Y++++  L R  RL EA  LF++M+A+G  P  +  + +I  L    
Sbjct: 200 NIPKPDACS----YNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREA 255

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
              +   L++++ + G + +V +  +S L+ GLC+   +  A +L   M+K+R       
Sbjct: 256 CFDDALKLFDEMARRGIMPNVVT--YSSLIDGLCKGGRAASAVELLDRMVKERKLPNTIT 313

Query: 451 VDKIVEHLKKSG 462
              +++ L K G
Sbjct: 314 YSSVIDGLCKEG 325


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 162/364 (44%), Gaps = 39/364 (10%)

Query: 66  LHRCFPSQSQ--MGIRFFIWAALQSSYRHSSFMYNR-ACEMSRIKQ-------------- 108
           +H+   SQ+   + +  F  A+ Q  ++HS   Y+   C++ R +Q              
Sbjct: 103 VHKLIASQTDALLAMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKD 162

Query: 109 ----NPSIIIDVVEAYKEEGCVVSV----------------KMMKVIFNLCEKARLANEA 148
                P + +D++E Y E G                     K   V+  +  + +    A
Sbjct: 163 GCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETA 222

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
           + + +K+ EF + P+T  YN +IR  C    +  A  L   M      PD+ TY  +++G
Sbjct: 223 LSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQG 282

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C   +++ A G+   M   G   + + Y+ LL+ +CR  ++  A  LL +M+  G  C+
Sbjct: 283 LCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMG--CN 340

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P+V+ Y +VI  FC +G   +A  IL  M   GC PN ++  TL+ G C EG  DEA   
Sbjct: 341 PDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDF 400

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
           ++++++ G +     Y  L+  L    ++ EA ++   M    + P     SV++  +C 
Sbjct: 401 VEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLMRICE 460

Query: 389 GGQV 392
             Q 
Sbjct: 461 DSQT 464



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 111/212 (52%), Gaps = 5/212 (2%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           ++GC+  V+   ++   LC K+++   A+ VL +M      PD + YN ++   C K ++
Sbjct: 266 KQGCIPDVETYSILMQGLCRKSQVKT-ALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNL 324

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L+  M ++   PD+I Y ++I GFC  GR  DAC + + M  +GC  N ++Y  L
Sbjct: 325 REAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTL 384

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++G+C  G  + A + + EM   G    P++  Y  +I   C +G + EA  +L  M   
Sbjct: 385 VNGLCNEGKFDEAKDFVEEMISNG--FIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQ 442

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
             AP+  T S L+   C E +  EA +L+DK+
Sbjct: 443 TLAPHESTWSVLLMRIC-EDSQTEARELVDKL 473



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 7/203 (3%)

Query: 236 AYSALLDGICRLGSME--RALE-LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +YS     IC+LG     + +E L+ +M K+G   +P +  +  +I+I+   GM  EA+ 
Sbjct: 132 SYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGL--FVDIIEIYGEVGMPNEAIK 189

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
              +M   G  P     + L+        L+ A  L  K+   G   +   Y+ L+    
Sbjct: 190 AFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRAHC 249

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
            + +L  A  LF+KM   G  PD    S++++ LC   QV     + +++   G++   D
Sbjct: 250 HSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVP--D 307

Query: 413 SDIHSVLLLGLCRKNHSVEAAKL 435
           +  ++ LL  LCRK +  EA +L
Sbjct: 308 ALTYNTLLNSLCRKMNLREAYRL 330



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 5/173 (2%)

Query: 273 TYTSVIQIFCGKG---MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +Y++   + C  G     K   G++ +M   GC         +I+ +   G  +EA +  
Sbjct: 132 SYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAF 191

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            +++  G       ++ L++ L+  K L+ A  LF K+   G+ P+    +++IR  C  
Sbjct: 192 HQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHS 251

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            ++   + L+  + K G +  V++  +S+L+ GLCRK+    A  +   ML K
Sbjct: 252 DKLSHAYFLFNKMHKQGCIPDVET--YSILMQGLCRKSQVKTALGVLDEMLNK 302


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 150/287 (52%), Gaps = 2/287 (0%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E GCV+ V     + N   + ++ ++A  + ++M E  + PD      +I  +C+ G+M 
Sbjct: 427 ERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMT 486

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  L + M L  L PD++TY +++ GFC  G +E A  L+  M       + +++S L+
Sbjct: 487 KALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILI 546

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G C LG +  A  L  EM+++G    P +VT  ++I+ +   G + +A   L+ M + G
Sbjct: 547 NGFCSLGLVSEAFRLWDEMKEKG--IKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEG 604

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+ +T +TLI  F  E N D A+ LI+ +   G + +   Y++++    R  R++EAE
Sbjct: 605 VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAE 664

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
            +  KM+  G+ PD    + +I        + E F +++++ + GF+
Sbjct: 665 MVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFV 711



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 167/333 (50%), Gaps = 10/333 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           V E + + G +V+V  + ++ N LC+  +L N  ++ L +M E  +  D + YN ++  +
Sbjct: 211 VYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVY-LSEMEEKGVYADLVTYNTLVNAY 269

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C +G +  A  L+  M    L P + TY ++I G C  G  E A  +   M   G   N 
Sbjct: 270 CRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNA 329

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             ++ +L   CR   +  A  +  EM + G    P++++++S++ +F   G +  AL   
Sbjct: 330 ATFNPMLVESCRKEDVWEAERVFNEMLQRG--VVPDLISFSSIVGVFSRNGELGRALAYF 387

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           ++M+ +G  P+ V  + LI G+C   ++  A ++ +++V  G V     Y++L+  L R 
Sbjct: 388 EKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRG 447

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
           K L +A++LF +M+  GV PD    + +I   C  G + +   L+E +     L S+  D
Sbjct: 448 KMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMT----LRSLKPD 503

Query: 415 I--HSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           +  ++ L+ G C+     +A +L   M+ + I+
Sbjct: 504 VVTYNTLMDGFCKVGEMEKAKELWYDMISREIF 536



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 138/292 (47%), Gaps = 15/292 (5%)

Query: 96  MYNRACEMSRIKQNP--------SIIIDVVEAYKE--EGCVVS--VKMMKVIFNLCEKAR 143
           M  R C M  +  N          ++ D  E +KE  E  V      +  +I   C+   
Sbjct: 425 MVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGN 484

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           +  +A+ +   M    L+PD + YN ++  FC+ G+M  A EL   M   +++P  I++ 
Sbjct: 485 MT-KALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFS 543

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            +I GFC+ G + +A  L+  MK  G    LV  + ++ G  R G++ +A + L  M  E
Sbjct: 544 ILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISE 603

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G    P+ +TY ++I  F  +     A  +++ ME  G  PN VT + ++ GF   G + 
Sbjct: 604 G--VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQ 661

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           EA  ++ K++  G       Y+SL+   V    +KEA ++  +ML  G  PD
Sbjct: 662 EAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 4/297 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+    KM    L PDT+IY  +I  +C   D+  A ++   M       D++TY +++ 
Sbjct: 383 ALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLN 442

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C    L+DA  LFK M   G   +    + L+ G C+ G+M +AL L   M       
Sbjct: 443 GLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRS--L 500

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+VVTY +++  FC  G M++A  +   M +    P+ ++ S LI GFC  G + EA++
Sbjct: 501 KPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFR 560

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L D++   G   +    ++++   +R   L +A    + M++ GV PD +  + +I    
Sbjct: 561 LWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFV 620

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
                   F L  ++E+ G L ++ +  ++ +L G  R     EA  +   M+ K I
Sbjct: 621 KEENFDRAFFLINNMEERGLLPNLVT--YNAILGGFSRHGRMQEAEMVLHKMIDKGI 675



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 131/239 (54%), Gaps = 4/239 (1%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           +++      G ++ A  +++   + G   N+   + +++ +C+ G ++     L EME++
Sbjct: 194 ALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEK 253

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G     ++VTY +++  +C +G++ EA G++D M   G  P   T + LI G C EG+ +
Sbjct: 254 G--VYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYE 311

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A +++D+++  G   +   ++ ++VE  R + + EAE++F++ML  GV PD ++ S ++
Sbjct: 312 RAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIV 371

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
                 G++      +E ++ +G +   D+ I+++L+ G CR +    A K+   M+++
Sbjct: 372 GVFSRNGELGRALAYFEKMKGVGLVP--DTVIYTILINGYCRNDDVSGALKMRNEMVER 428



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 4/176 (2%)

Query: 89  SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
           SY   S + N  C +  + +       + +  KE+G   ++     I     +A   ++A
Sbjct: 538 SYISFSILINGFCSLGLVSE----AFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKA 593

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
              L  M    + PD I YN +I  F ++ +   A  L+  M    L P+++TY +++ G
Sbjct: 594 NDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGG 653

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           F   GR+++A  +   M   G   +   Y++L++G     +M+ A  +  EM + G
Sbjct: 654 FSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRG 709


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 168/335 (50%), Gaps = 16/335 (4%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F++N+A E           + +V+   + GC  ++    V+ N LC++    + A+ 
Sbjct: 198 HGLFLHNKASEA----------VALVDRMVQRGCQPNLVTYGVVVNGLCKRGD-TDLALN 246

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L KM    +  D +I+N +I   C+   +  A  L K M    + P+++TY S+I   C
Sbjct: 247 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLC 306

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           + GR  DA  L   M       NLV ++AL+D   + G    A +L  +M K   D  P+
Sbjct: 307 SYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID--PD 364

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY S++  FC    + +A  + + M +  C P+ VT +TLIKGFC    +++  +L  
Sbjct: 365 IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR 424

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V     Y++L+  L        A+K+F +M++ GV PD +  S+++  LC  G
Sbjct: 425 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 484

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           ++ +   +++ ++K      +D  I++ ++ G+C+
Sbjct: 485 KLEKALEVFDYMQKSEI--KLDIYIYTTMIEGMCK 517



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 182/359 (50%), Gaps = 11/359 (3%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++ +EA K E  VV      +I +LC K R  ++A+ + ++M    +RP+ + Y+++I 
Sbjct: 247 LLNKMEAAKIEADVVIFN--TIIDSLC-KYRHVDDALNLFKEMETKGIRPNVVTYSSLIS 303

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G    A +L+  M    + P+++T+ ++I  F   G+  +A  L+  M +     
Sbjct: 304 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDP 363

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++  Y++L++G C    +++A ++   M  +  DC P+VVTY ++I+ FC    +++   
Sbjct: 364 DIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK--DCFPDVVTYNTLIKGFCKSKRVEDGTE 421

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M   G   + VT +TLI+G   +G+ D A ++  ++V+ G       YS L+  L 
Sbjct: 422 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 481

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              +L++A ++F  M  S +K D    + MI  +C  G+V +G+ L+  +   G   +V 
Sbjct: 482 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 541

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK-RIWLQGPYVDKIVEHLK---KSGDEELI 467
           +  ++ ++ GLC K    EA  L + M +   +   G Y   I  HL+   K+   ELI
Sbjct: 542 T--YNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELI 598



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 148/312 (47%), Gaps = 5/312 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V +  ++   C   R++ +A+ ++ +M E   RPDTI +  +I           A  L+ 
Sbjct: 156 VTLSSLLNGYCHGKRIS-DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVD 214

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P+++TY  ++ G C  G  + A  L   M+     A++V ++ ++D +C+  
Sbjct: 215 RMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYR 274

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ AL L  EME +G    PNVVTY+S+I   C  G   +A  +L  M      PN VT
Sbjct: 275 HVDDALNLFKEMETKG--IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 332

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + LI  F  EG   EA +L D ++          Y+SLV       RL +A+++F  M+
Sbjct: 333 FNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMV 392

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           +    PD +  + +I+  C   +V +G  L+ ++   G +   D+  ++ L+ GL     
Sbjct: 393 SKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG--DTVTYTTLIQGLFHDGD 450

Query: 429 SVEAAKLARFML 440
              A K+ + M+
Sbjct: 451 CDNAQKVFKQMV 462



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 166/362 (45%), Gaps = 22/362 (6%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
            ++I + E  +    V  +    ++ N  C +++++  A+ +L KM +    P  +  ++
Sbjct: 102 DVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQIS-LALALLGKMMKLGYEPSIVTLSS 160

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           ++  +C    +  A  L+  M  +   PD IT+ ++I G     +  +A  L   M + G
Sbjct: 161 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           C  NLV Y  +++G+C+ G  + AL LL +M  E      +VV + ++I   C    + +
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDTDLALNLLNKM--EAAKIEADVVIFNTIIDSLCKYRHVDD 278

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           AL +   ME  G  PN VT S+LI   C  G   +A QL+  ++      +   +++L+ 
Sbjct: 279 ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALID 338

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK----I 405
             V+  +  EAEKL+  M+   + PD    + ++           GFC+++ ++K     
Sbjct: 339 AFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLV----------NGFCMHDRLDKAKQMF 388

Query: 406 GFLSSVD--SDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
            F+ S D   D+  ++ L+ G C+     +  +L R M  + +         +++ L   
Sbjct: 389 EFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHD 448

Query: 462 GD 463
           GD
Sbjct: 449 GD 450



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 137/286 (47%), Gaps = 10/286 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + +N ++    +         L + M  +++   + TY  +I  FC   ++  A  L
Sbjct: 83  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M + G   ++V  S+LL+G C    +  A+ L+ +M + G    P+ +T+T++I   
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG--YRPDTITFTTLIHGL 200

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
                  EA+ ++DRM   GC PN VT   ++ G C  G+ D A  L++K+ A    +  
Sbjct: 201 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADV 260

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             +++++  L + + + +A  LF +M   G++P+ +  S +I  LC  G+  +   L  D
Sbjct: 261 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 320

Query: 402 -IEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            IEK      ++ ++   + L+    ++   VEA KL   M+K+ I
Sbjct: 321 MIEK-----KINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 361



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 128/278 (46%), Gaps = 39/278 (14%)

Query: 202 YVSMIKGFCNAGRLEDACGLF-----------------------------------KVMK 226
           Y  +++   +  +L+DA GLF                                   + M+
Sbjct: 53  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 112

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           R      L  Y+ L++  CR   +  AL LLG+M K G +  P++VT +S++  +C    
Sbjct: 113 RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYE--PSIVTLSSLLNGYCHGKR 170

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + +A+ ++D+M  +G  P+ +T +TLI G  +     EA  L+D++V  G   +   Y  
Sbjct: 171 ISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGV 230

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           +V  L +      A  L +KM A+ ++ D +  + +I  LC    V +   L++++E  G
Sbjct: 231 VVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKG 290

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
              +V +  +S L+  LC      +A++L   M++K+I
Sbjct: 291 IRPNVVT--YSSLISCLCSYGRWSDASQLLSDMIEKKI 326


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 134/264 (50%), Gaps = 2/264 (0%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V +V     + N   K    +    V  +M  F + P+   +N +  + C+ GD    
Sbjct: 263 GFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKV 322

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           ++ ++ M      PDI+TY ++I  +C  GRL+DA  L+K+M R G   +LV+Y+AL++G
Sbjct: 323 NKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNG 382

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +C+ G +  A +L   M   G   SP++VTY ++I  +C +G M+E+  +L  M   G +
Sbjct: 383 LCKEGRVREAHQLFHRMVHRG--LSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGIS 440

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+  T   L++G+  EG    A  L+ ++   G   S   YS L+V L R  R   A+ L
Sbjct: 441 PDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNL 500

Query: 364 FSKMLASGVKPDGLACSVMIRELC 387
             +M   G K +    + +I+  C
Sbjct: 501 LERMSQDGHKXELEIYNELIKSFC 524



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 184/422 (43%), Gaps = 49/422 (11%)

Query: 41  KNPNNI-----------EKTLATVKAKLDSTC-------VIEVLHRCFPSQSQMGIRFFI 82
           +NPNNI              LA +  ++++         +  VL RC  S S   + FF 
Sbjct: 109 QNPNNIVNLICSNLKQHNSNLALLHTEVNALLPHLGAQEISRVLLRC-QSDSFTALSFFN 167

Query: 83  WAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE-- 140
           W       R S+             QN  II+  +          S    + I  LCE  
Sbjct: 168 WVKNDLGLRPST-------------QNYCIIVHTL--------AWSRNFSQAIKFLCELV 206

Query: 141 ---KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
              K  L  E ++    +   D   D ++++ +++ +   G +       + M  +   P
Sbjct: 207 ELVKDDLPGEDVFKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVP 266

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            +IT   ++ G       +    +++ M+R G A NL  ++ L   +C+ G   +  + L
Sbjct: 267 TVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFL 326

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +ME+EG D  P++VTY ++I  +C KG + +A  +   M   G  P+ V+ + L+ G C
Sbjct: 327 EKMEEEGFD--PDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLC 384

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            EG + EA+QL  ++V  G       Y++L+    +  +++E+  L   M+ +G+ PD  
Sbjct: 385 KEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSF 444

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
            C V++      G+ L    L  ++++ G   S+  DI+S L++ LCR+N    A  L  
Sbjct: 445 TCWVLVEGYGKEGKFLSALNLVVELQRFGV--SISQDIYSYLIVALCRENRPFAAKNLLE 502

Query: 438 FM 439
            M
Sbjct: 503 RM 504



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 123/288 (42%), Gaps = 47/288 (16%)

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           L KM E    PD + YN +I  +C KG +  A  L K M    + PD+++Y +++ G C 
Sbjct: 326 LEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCK 385

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
            GR+ +A  LF  M   G + ++V Y+ L+ G C+ G M+ +  LL +M   G   SP+ 
Sbjct: 386 EGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNG--ISPDS 443

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
            T   +++ +  +G    AL ++  ++  G + ++   S LI   C E     A  L+++
Sbjct: 444 FTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLER 503

Query: 332 VVAGGSVSSGGCYSSLV----------------VELV-------------------RTKR 356
           +   G       Y+ L+                +E+V                   R  R
Sbjct: 504 MSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSR 563

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
             E E L  +M+ASG  PD   C  +            G+C   DI+K
Sbjct: 564 SMEGESLVGEMVASGXLPDLEICRAL----------FYGYCRENDIDK 601



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 7/194 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC + R    A  +L +M +   + +  IYN +I+ FC+  D IA   L+K M ++
Sbjct: 484 LIVALCRENR-PFAAKNLLERMSQDGHKXELEIYNELIKSFCQ-CDCIAEALLLK-MEMV 540

Query: 194 D--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           D  + P++ TY ++J       R  +   L   M   G   +L    AL  G CR   ++
Sbjct: 541 DKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMVASGXLPDLEICRALFYGYCRENDID 600

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
           +A  LL    KE      +  ++ ++I+I   KG +  +L I D M  +G  PN +T   
Sbjct: 601 KAESLLSFXAKEFQ--IHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPNPLTCKY 658

Query: 312 LIKGFCVEGNLDEA 325
           +I G      +D A
Sbjct: 659 VIDGLWKARRVDSA 672


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 152/313 (48%), Gaps = 8/313 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRK 154
           + N  C+  R K    +I    +    +G  V V    V I NLC  +R A +   +L++
Sbjct: 216 LLNWYCKKGRYKAASQLI----DCMASKGIGVDVCTYNVFIDNLCRDSRSA-KGYLLLKR 270

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M    + P+ I YN +I  F  +G +  A ++   M L +L P+ ITY ++I G C  G 
Sbjct: 271 MRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGN 330

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           + +A  L  VM  HG   N V Y ALL+G+ +         +L  M   G   S   ++Y
Sbjct: 331 IGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSH--ISY 388

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           T++I   C  GM++EA+ +LD M  +   P+ VT S LI GF   G ++ A +++ K+  
Sbjct: 389 TAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYK 448

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G V +G  YS+L+    +   LKEA   ++ M  SG   D   C+V++   C  G++ E
Sbjct: 449 TGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEE 508

Query: 395 GFCLYEDIEKIGF 407
                  + ++G 
Sbjct: 509 AEYFMNHMSRMGL 521



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 164/377 (43%), Gaps = 41/377 (10%)

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +G    V    ++ N LCE+ +  N A ++LRKM E  + P  + YN ++  +C+KG   
Sbjct: 169 KGICPDVATFNILLNALCERGKFKN-AGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRYK 227

Query: 182 AADELM-----KGMGL--------ID----------------------LYPDIITYVSMI 206
           AA +L+     KG+G+        ID                      +YP+ ITY ++I
Sbjct: 228 AASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTLI 287

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GF   G++E A  +F  M       N + Y+ L+ G C  G++  AL L+  M   G  
Sbjct: 288 SGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHG-- 345

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PN VTY +++              IL+RM   G   + ++ + +I G C  G L+EA 
Sbjct: 346 LRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAV 405

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           QL+D ++          +S L+    R  ++  A+++  KM  +G+ P+G+  S +I   
Sbjct: 406 QLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNY 465

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           C  G + E    Y  +   G ++  D    +VL+   CR     EA      M +  +  
Sbjct: 466 CKMGYLKEALNAYAVMNHSGHVA--DHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLDP 523

Query: 447 QGPYVDKIVEHLKKSGD 463
                D I+     SGD
Sbjct: 524 NSVTFDCIINGYGNSGD 540



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 167/360 (46%), Gaps = 5/360 (1%)

Query: 112 IIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           ++  ++E  +  G  VS +    +I  LC+   L  EA+ +L  M +  + PD + ++ +
Sbjct: 368 MVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLE-EAVQLLDDMLKVSVNPDVVTFSVL 426

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I  F   G +  A E+M  M    L P+ I Y ++I  +C  G L++A   + VM   G 
Sbjct: 427 INGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGH 486

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
            A+    + L+   CR G +E A   +  M + G D  PN VT+  +I  +   G   +A
Sbjct: 487 VADHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLD--PNSVTFDCIINGYGNSGDALKA 544

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             + D+M + G  P+  T   L+KG C+ G+++EA +   ++    +      +++ +  
Sbjct: 545 FSVFDKMNSFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRLRCIPNAVDNVIFNTKLTS 604

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             R+  L +A  L ++M+ +   PD    + +I  LC  G+++    L     + G LS 
Sbjct: 605 TCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSP 664

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            +  +++ L+ GL +  H+  A  +   ML K +       + I++   + G    + ++
Sbjct: 665 -NPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDI 723



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 151/331 (45%), Gaps = 4/331 (1%)

Query: 107  KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
            K   S + D++   K +    ++    ++ +   K         + + M      PD   
Sbjct: 714  KGKTSKVNDILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFS 773

Query: 167  YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
            ++++I  +C+      A ++++ + L     D  T+  +I  FC    ++ A  L K M 
Sbjct: 774  WHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMN 833

Query: 227  RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
            +     N+  Y+AL +G+ R     +A  +L  + + G    P    Y ++I   C  G 
Sbjct: 834  QFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGS--VPTNKQYITLINGMCRVGN 891

Query: 287  MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
            +K A+ + D M+ LG + + V +S +++G      ++ A  ++D ++    + +   +++
Sbjct: 892  IKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQIIPTVATFTT 951

Query: 347  LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            L+    +   + +A +L S M    VK D +A +V+I  LC  G +   F LYE++++  
Sbjct: 952  LMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQRD 1011

Query: 407  FLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
                 ++ I+ VL+   C  N+ +E+ KL R
Sbjct: 1012 LWP--NTSIYIVLIDSFCAGNYQIESEKLLR 1040



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 165/367 (44%), Gaps = 23/367 (6%)

Query: 99  RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           +A E   +  NP++   +V+   + G                    A  A+++  +M   
Sbjct: 655 KAIEKGLLSPNPAVYTSLVDGLLKHGH-------------------ARAALYIFEEMLNK 695

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           D+ PDT+ +N +I  +  KG     ++++  M   +L  ++ TY  ++ G+     +   
Sbjct: 696 DVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILLHGYAKRHAMARC 755

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L+K M RHG   +  ++ +L+ G C+  S + A+++L  +  EG     +  T+  +I
Sbjct: 756 FMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGH--VIDRFTFNMLI 813

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             FC +  MK+A  ++ +M      PN  T + L  G     +  +A++++  ++  GSV
Sbjct: 814 TKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSV 873

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y +L+  + R   +K A KL  +M   G+    +A S ++R L    ++     +
Sbjct: 874 PTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWV 933

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
            + + ++  + +V +   + L+   C++ +  +A +L   M    + L     + ++  L
Sbjct: 934 LDLMLEMQIIPTVAT--FTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLISGL 991

Query: 459 KKSGDEE 465
             +GD E
Sbjct: 992 CANGDIE 998


>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 602

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 180/384 (46%), Gaps = 8/384 (2%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV---IFNLCEKAR 143
           ++ YR     +N A +         +I  + E   E G    V +  V   I   C   +
Sbjct: 183 EAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCNDNK 242

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           ++  A  +LR+  E  L P    +N +I  FC++ +     EL+  M + +  PDI TY 
Sbjct: 243 VS-RAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQ 301

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            +I GFC       A  +F  +K  G A ++V Y+ L+ G C++G +E A +L  EM  +
Sbjct: 302 EIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDK 361

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G    PN  +Y ++I  FC  G + EA+ +  +M   G     ++ +TLI G C+ G  D
Sbjct: 362 G--FLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTD 419

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           EAY    ++     V     Y++L+    R  ++ ++  L  ++ A G++P   + + +I
Sbjct: 420 EAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLI 479

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           ++LC  G V E   ++ D+   G    V +  H  ++ GLC + + VE  +    MLK  
Sbjct: 480 QKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDH--IISGLCEQGYVVEGMEWLITMLKSN 537

Query: 444 IWLQGPYVDKIVEHLKKSGDEELI 467
           +  Q     K+++ L + G E L+
Sbjct: 538 LKPQKETFYKLIQSLIQIGKELLL 561



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 166/364 (45%), Gaps = 9/364 (2%)

Query: 76  MGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI 135
           + +RFF+W + Q  +       N+      + +  + +      Y  E       +   I
Sbjct: 105 LSLRFFLWLSSQPEFLPHPVSCNKL--FDALLEAKACVPAKSFLYSFEFSPEPASLENYI 162

Query: 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
             +CE   L  EA++    + E   RP    +N   +   + G      +L +GM    +
Sbjct: 163 RCVCEGG-LVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGV 221

Query: 196 YPD--IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             D  I T   +I+ FCN  ++  A  + +     G      A++ L+ G C+  +  R 
Sbjct: 222 QKDVDIETVGYLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRV 281

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           LEL+  M  +  +  P++ TY  +I  FC   M  +A  + + ++  G AP+ V  +TLI
Sbjct: 282 LELVHTMIVKNRN--PDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLI 339

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC  G L++A +L  +++  G + +   Y++L+    +   L EA KL+ KML SG K
Sbjct: 340 HGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYK 399

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
              L+C+ +I  LCL G+  E +  + ++     +  V +  ++ L+ G CR+   +++ 
Sbjct: 400 ETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVIT--YNTLIQGFCREGKVLQST 457

Query: 434 KLAR 437
            L +
Sbjct: 458 DLLK 461


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 167/332 (50%), Gaps = 9/332 (2%)

Query: 118 EAYKE---EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           E Y+E    G  V+V  + ++ N LC+  ++ N   + L  M E  + PD + YN +I  
Sbjct: 240 EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSF-LSDMEEKGVFPDVVTYNTLINA 298

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C +G +  A ELM  M    L P + TY ++I G C  G+   A G+   M + G + +
Sbjct: 299 YCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 358

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              Y+ LL   CR  +M  A  +  EM  +G    P++V+++++I +    G + +AL  
Sbjct: 359 TATYNILLVECCRNDNMMDAERIFDEMPSQG--VVPDLVSFSALIGLLSKNGCLDQALKY 416

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M+  G AP+ V  + LI GFC  G + EA ++ D+++  G V     Y++++  L +
Sbjct: 417 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK 476

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            K L EA++LF++M   GV PD    + +I      G + +   L+E + +      V +
Sbjct: 477 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 536

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
             ++ L+ G C+ +   +  +L   M+ +RI+
Sbjct: 537 --YNTLIDGFCKGSEMEKVNELWNDMISRRIY 566



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 146/287 (50%), Gaps = 2/287 (0%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E+GCV+ V     I N   K ++ +EA  +  +M E  + PD   +  +I  + + G+M 
Sbjct: 457 EQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMN 516

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  L + M   +L PD++TY ++I GFC    +E    L+  M       N ++Y  L+
Sbjct: 517 KAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 576

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G C +G +  A  L  EM ++G + +  ++T  ++++ +C  G   +A   L  M   G
Sbjct: 577 NGYCNMGCVSEAFRLWDEMVEKGFEAT--IITCNTIVKGYCRAGNAVKADEFLSNMLLKG 634

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+ +T +TLI GF  E N+D A+ L++K+   G +     Y+ ++    R  R++EAE
Sbjct: 635 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAE 694

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
            +  KM+  GV PD    + +I        + E F +++++ + GF+
Sbjct: 695 LIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFV 741



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 168/327 (51%), Gaps = 5/327 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +    A  VL +M +  + PDT  YN ++   C   +M+ A+ +   M   
Sbjct: 330 IINGLCKTGKYL-RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQ 388

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD++++ ++I      G L+ A   F+ MK  G A + V Y+ L+ G CR G M  A
Sbjct: 389 GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEA 448

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L++  EM ++G  C  +VVTY +++   C + M+ EA  +   M   G  P+  T +TLI
Sbjct: 449 LKVRDEMLEQG--CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLI 506

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+  +GN+++A  L + ++          Y++L+    +   +++  +L++ M++  + 
Sbjct: 507 NGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY 566

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ ++  ++I   C  G V E F L++++ + GF +++ +   + ++ G CR  ++V+A 
Sbjct: 567 PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIIT--CNTIVKGYCRAGNAVKAD 624

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKK 460
           +    ML K I   G   + ++    K
Sbjct: 625 EFLSNMLLKGIVPDGITYNTLINGFIK 651



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 2/254 (0%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G          + N   K    N+A+ +   M + +L+PD + YN +I  FC+  +M 
Sbjct: 492 ERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEME 551

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
             +EL   M    +YP+ I+Y  +I G+CN G + +A  L+  M   G  A ++  + ++
Sbjct: 552 KVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIV 611

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G CR G+  +A E L  M  +G    P+ +TY ++I  F  +  M  A  ++++ME  G
Sbjct: 612 KGYCRAGNAVKADEFLSNMLLKG--IVPDGITYNTLINGFIKEENMDRAFALVNKMENSG 669

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+ +T + ++ GF  +G + EA  ++ K++  G       Y+SL+   V    LKEA 
Sbjct: 670 LLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAF 729

Query: 362 KLFSKMLASGVKPD 375
           ++  +ML  G  PD
Sbjct: 730 RVHDEMLQRGFVPD 743



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 153/329 (46%), Gaps = 4/329 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + +    +G V  +     +  L  K    ++A+   R M    L PD +IY  +I  FC
Sbjct: 381 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC 440

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G M  A ++   M       D++TY +++ G C    L +A  LF  M   G   +  
Sbjct: 441 RNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY 500

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L++G  + G+M +A+ L   M +   +  P+VVTY ++I  FC    M++   + +
Sbjct: 501 TFTTLINGYSKDGNMNKAVTLFEMMIQR--NLKPDVVTYNTLIDGFCKGSEMEKVNELWN 558

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M +    PN ++   LI G+C  G + EA++L D++V  G  ++    +++V    R  
Sbjct: 559 DMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAG 618

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
              +A++  S ML  G+ PDG+  + +I        +   F L   +E  G L  V +  
Sbjct: 619 NAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVIT-- 676

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           ++V+L G  R+    EA  +   M+++ +
Sbjct: 677 YNVILNGFSRQGRMQEAELIMLKMIERGV 705



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 140/275 (50%), Gaps = 8/275 (2%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S++ G    G ++ A  +++ + R G   N+   + +++ +C+   +E     L +ME++
Sbjct: 224 SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEK 283

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G    P+VVTY ++I  +C +G+++EA  ++D M   G  P   T + +I G C  G   
Sbjct: 284 G--VFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYL 341

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A  ++D+++  G       Y+ L+VE  R   + +AE++F +M + GV PD ++ S +I
Sbjct: 342 RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI 401

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
             L   G + +    + D++  G   + D+ I+++L+ G CR     EA K+   ML++ 
Sbjct: 402 GLLSKNGCLDQALKYFRDMKNAGL--APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 459

Query: 444 IWLQGPYVDKIVEHLKK----SGDEELITNLPKIG 474
             L     + I+  L K    S  +EL T + + G
Sbjct: 460 CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERG 494


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 165/345 (47%), Gaps = 8/345 (2%)

Query: 123 EGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC+ + V    +I   CE AR  +EA+ +  +M E +  P    Y  +I   C+ G   
Sbjct: 268 KGCLRNEVSYTNLIHGFCE-ARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKT 326

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  + K M      P++ TY  +I   C     +DA  +   M   G   ++V Y+AL+
Sbjct: 327 EALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALI 386

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG C+ G    ALE+L  ME    +CSPN  TY  +I  FC    + +A+ +L +M    
Sbjct: 387 DGYCKKGLSASALEILSLME--SNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERK 444

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN VT + LI G C EG+L  AY+L+  +   G V     YS  +  L +   ++EA 
Sbjct: 445 LQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEAR 504

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
            LF  +   G+K + +  S +I   C  G+V +G  L + +   G +   +S  ++ L+ 
Sbjct: 505 SLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVP--NSITYNSLID 562

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
           G C++ +  EA  L   M+K+ I         ++++L K  D+E 
Sbjct: 563 GYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLK--DDEF 605



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 3/274 (1%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           ++I   C + +  ++AM +L KM E  L+P+ + YN +I   C++GD+ +A +L+  M  
Sbjct: 419 ELILGFC-RGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNE 477

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             L PD  TY   I   C  G +E+A  LF+ +K  G  AN V YS L+DG C++G +  
Sbjct: 478 SGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSD 537

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
              LL +M   G  C PN +TY S+I  +C +   KEA  ++D M      P   T + L
Sbjct: 538 GRFLLDKMLSAG--CVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTIL 595

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I     +   D+A+ + D++++ GS      Y++ +       RLK+AE L  KM A G+
Sbjct: 596 IDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGI 655

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            PD +  ++ I      G +   F + + + ++G
Sbjct: 656 MPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVG 689



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 149/333 (44%), Gaps = 43/333 (12%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA   + K+ +  L  DT  Y ++I  +C   ++ AA+ +   M       + ++Y ++I
Sbjct: 222 EAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLI 281

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC A R+++A  LF  M    C   +  Y+ ++  +C+LG    AL +  EM ++   
Sbjct: 282 HGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEK--H 339

Query: 267 CSPNVVTYT-----------------------------------SVIQIFCGKGMMKEAL 291
           C PNV TYT                                   ++I  +C KG+   AL
Sbjct: 340 CQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASAL 399

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            IL  ME+  C+PN  T + LI GFC   N+ +A  L+ K++      +   Y+ L+   
Sbjct: 400 EILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQ 459

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +   L  A KL S M  SG+ PD    SV I  LC  G V E   L+E +++ G     
Sbjct: 460 CKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGI--KA 517

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +  I+S L+ G C+    V      RF+L K +
Sbjct: 518 NEVIYSTLIDGYCK----VGKVSDGRFLLDKML 546



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 160/358 (44%), Gaps = 41/358 (11%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI-FNLCEKARLANEAMWVLRKMPEFD 159
           CE  R+ +     + +     E+ C  +V+   VI F LC+  R   EA+ + ++M E  
Sbjct: 285 CEARRVDE----ALKLFSQMHEDNCWPTVRTYTVIIFALCQLGR-KTEALNMFKEMTEKH 339

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            +P+   Y  +I   CE  +   A +++ GM    L P ++TY ++I G+C  G    A 
Sbjct: 340 CQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASAL 399

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE-------------GGD 266
            +  +M+ + C+ N   Y+ L+ G CR  ++ +A+ LL +M +               G 
Sbjct: 400 EILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQ 459

Query: 267 CS--------------------PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
           C                     P+  TY+  I   C +G+++EA  + + ++  G   N 
Sbjct: 460 CKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANE 519

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           V  STLI G+C  G + +   L+DK+++ G V +   Y+SL+    + K  KEA  L   
Sbjct: 520 VIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDI 579

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           M+   ++P     +++I  L    +  +   +++ +   G  S  D  I++  +   C
Sbjct: 580 MIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTG--SHPDVFIYTAFIHAYC 635



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 184/411 (44%), Gaps = 38/411 (9%)

Query: 75  QMGIRFFIWAALQSSYRHS-----SFM-------YNRACEMSRI--------KQNPSIII 114
           Q  + FF W   +  ++H+     S +       Y R  E  RI         +N   ++
Sbjct: 91  QTALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAENMRILMIKSTDSSENALFVL 150

Query: 115 DV-------VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           ++       V+A+K +   ++++   ++  L  +  + +E   V  +M +  + P+    
Sbjct: 151 EMLRSMNRRVDAFKFK---LTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTL 207

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N ++  +C+ G+++ A+  +  +    L  D  TY S+I G+C    ++ A  +F  M  
Sbjct: 208 NTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPN 267

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            GC  N V+Y+ L+ G C    ++ AL+L  +M ++  +C P V TYT +I   C  G  
Sbjct: 268 KGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHED--NCWPTVRTYTVIIFALCQLGRK 325

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            EAL +   M    C PN  T + LI   C + N D+A ++++ ++  G + S   Y++L
Sbjct: 326 TEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNAL 385

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +    +      A ++ S M ++   P+    + +I   C G  + +   L   + +   
Sbjct: 386 IDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKL 445

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI----WLQGPYVDKI 454
             +V +  +++L+ G C++     A KL   M +  +    W    ++D +
Sbjct: 446 QPNVVT--YNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTL 494



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 99/259 (38%), Gaps = 31/259 (11%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD  IY   I  +C  G +  A+ L+  M    + PD + Y   I  +   G ++ A G
Sbjct: 621 HPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFG 680

Query: 221 LFKVMKRHGCAANLVAYSALLDGIC-----------------------------RLGSME 251
           + K M   GC  +   YS L+  +                              R    E
Sbjct: 681 ILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYE 740

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
             L+L G+M + G  C+PN  TY   I   C  G ++ A  + D M+  G +PN    ++
Sbjct: 741 FTLDLFGKMAEHG--CAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNS 798

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           L+   C  G   EA + +D ++    +        L+  L      ++A+++F   L   
Sbjct: 799 LLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCE 858

Query: 372 VKPDGLACSVMIRELCLGG 390
              D +   V+I  L   G
Sbjct: 859 YNYDEMVWKVLIDGLLKKG 877



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 89/220 (40%), Gaps = 32/220 (14%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I   C   RL  +A  ++ KM    + PDT++Y   I  +   G +  A  ++K M  + 
Sbjct: 631 IHAYCSHGRL-KDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVG 689

Query: 195 LYPDIITYVSMIKGFCNAG-----------------------------RLEDACGLFKVM 225
             P   TY  +IK   NA                                E    LF  M
Sbjct: 690 CEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKM 749

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
             HGCA N   Y   + G+C++G +E A  L   M+++G   SPN   Y S++   C  G
Sbjct: 750 AEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQ--SPNEDIYNSLLGCSCQLG 807

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  EA+  LD M      P+  +   L+ G   EGN ++A
Sbjct: 808 LYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKA 847



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 58/153 (37%), Gaps = 33/153 (21%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE- 255
           P+  TY   I G C  G LE A  LF  MK  G + N   Y++LL   C+LG    A+  
Sbjct: 756 PNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRW 815

Query: 256 ------------------LLGEMEKEGGD------------CSPNV--VTYTSVIQIFCG 283
                             LL  +  EG D            C  N   + +  +I     
Sbjct: 816 LDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLK 875

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           KG+  +   +   ME  GC  +  T S LI+GF
Sbjct: 876 KGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGF 908


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 171/368 (46%), Gaps = 44/368 (11%)

Query: 134 VIFNLC----EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           V++N+C     KA   + A     ++    L+PD + Y ++I + C+ G +  A+EL   
Sbjct: 253 VLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQ 312

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M      P    Y +MI G+ +AG+ E+A  L   +K  GC  ++V+++++L  + +   
Sbjct: 313 METERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRK 372

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-------- 301
           ++ AL L   M+K   D  PN  TY  +I + C  G ++EA  I D ME  G        
Sbjct: 373 VDEALTLFEAMKK---DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTV 429

Query: 302 ---------------------------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
                                      C PN VT  +LI G   +GN+D+AY+L + ++ 
Sbjct: 430 NIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLD 489

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G  ++   Y+SL+       R ++  K+F +M   G +PD    +  +  +   G V +
Sbjct: 490 TGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEK 549

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           G  ++EDI+  GFL  V S  +S+L+ GL +   + E + +   M ++   L     + +
Sbjct: 550 GRAIFEDIKGYGFLPDVRS--YSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAV 607

Query: 455 VEHLKKSG 462
           V+   KSG
Sbjct: 608 VDGFCKSG 615



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 142/286 (49%), Gaps = 2/286 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  K  G +  V+   ++ +   KA  A E   +   M +     D   YN V+  FC
Sbjct: 553 IFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFC 612

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A E+++ M +  + P + TY S+I G     RL++A  LF+  K  G   N++
Sbjct: 613 KSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVI 672

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS+L+DG  ++G ++ A  +L EM K+G   +PNV T+ S++        + EAL    
Sbjct: 673 VYSSLIDGFGKVGRIDEAYLILEEMMKKG--LTPNVYTWNSLMDALVKAEEINEALICFQ 730

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+ + C+PN  T S LI G C     ++A+    ++   G V +   Y++++  L +  
Sbjct: 731 SMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVG 790

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
            + +A  LF +  A+G  PD  + + +I  +    + +E + ++E+
Sbjct: 791 NITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEE 836



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 147/288 (51%), Gaps = 10/288 (3%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDM---IAADELMKGMGLIDLYPDIITYVSMIK 207
           + ++M     +PD  + N  +    + GD+    A  E +KG G +   PD+ +Y  +I 
Sbjct: 518 IFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFL---PDVRSYSILIH 574

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G   AG+  +   +F  MK+ G A +  AY+A++DG C+ G +++A E+L EM+ +    
Sbjct: 575 GLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVK--RV 632

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P V TY S+I        + EA  + +  ++ G   N +  S+LI GF   G +DEAY 
Sbjct: 633 PPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYL 692

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           ++++++  G   +   ++SL+  LV+ + + EA   F  M      P+    S++I  LC
Sbjct: 693 ILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLC 752

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
              +  + F  +++++K G + +V +  ++ ++ GL +  +  +A  L
Sbjct: 753 RVQKYNKAFVFWQEMQKQGLVPNVVT--YTTMIAGLAKVGNITDACSL 798



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 136/288 (47%), Gaps = 3/288 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++  KE GC+ SV     I     K R  +EA+ +   M + D  P++  YN +I + C
Sbjct: 344 LLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKK-DAEPNSSTYNIIIDMLC 402

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G +  A  +   M    L+P+++T   M+   C A + E A  +F+   + GC  N V
Sbjct: 403 MAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSV 462

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y +L+DG+ + G+++ A  L   M   G + +P  V YTS+I+ F   G  ++   I  
Sbjct: 463 TYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANP--VVYTSLIRNFFMHGRKEDGHKIFK 520

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   GC P+   ++T +      G++++   + + +   G +     YS L+  L +  
Sbjct: 521 EMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAG 580

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           + +E   +F  M   G   D  A + ++   C  G++ + + + E+++
Sbjct: 581 QARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMK 628



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 131/271 (48%), Gaps = 3/271 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           + R  ++A  V+  M     RP    Y  +I    E      A EL++ M  +     + 
Sbjct: 159 RTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVP 218

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            + ++++     GR+E A  L   +K      ++V Y+  +D   + G+++ A +   E+
Sbjct: 219 LFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHEL 278

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           + +G    P+ V+YTS+I + C  G + EA  +  +ME     P     +T+I G+   G
Sbjct: 279 KSQG--LKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAG 336

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
             + AY+L+D++   G + S   ++S++  L + +++ EA  LF  M     +P+    +
Sbjct: 337 QFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAM-KKDAEPNSSTYN 395

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           ++I  LC+ G+V E + + +++E  G   ++
Sbjct: 396 IIIDMLCMAGKVEEAYMIRDEMEHAGLFPNL 426



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 147/307 (47%), Gaps = 5/307 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+     +AR    A+ +LR+M E        ++  ++R    +G +  A  L+  +   
Sbjct: 187 VLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGS 246

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PDI+ Y   I  F  AG ++ A   F  +K  G   + V+Y++++  +C+ G +  A
Sbjct: 247 CLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEA 306

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL G+ME E     P    Y ++I  +   G  + A  +LD+++  GC P+ V+ ++++
Sbjct: 307 EELFGQMETE--RAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSIL 364

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
                +  +DEA  L + +      +S   Y+ ++  L    +++EA  +  +M  +G+ 
Sbjct: 365 TCLGKKRKVDEALTLFEAMKKDAEPNS-STYNIIIDMLCMAGKVEEAYMIRDEMEHAGLF 423

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ L  ++M+  LC   +    + ++E   + G   + +S  +  L+ GL +K +  +A 
Sbjct: 424 PNLLTVNIMVDRLCKAKKFEPAYEMFETASQRG--CNPNSVTYCSLIDGLGKKGNVDDAY 481

Query: 434 KLARFML 440
           +L   ML
Sbjct: 482 RLFENML 488



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 113/234 (48%), Gaps = 3/234 (1%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +V+E  K +    +V     I +   K    +EA  +  +     +  + I+Y+++I  F
Sbjct: 622 EVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGF 681

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            + G +  A  +++ M    L P++ T+ S++     A  + +A   F+ MK   C+ N 
Sbjct: 682 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNT 741

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             YS L++G+CR+    +A     EM+K+G    PNVVTYT++I      G + +A  + 
Sbjct: 742 YTYSILINGLCRVQKYNKAFVFWQEMQKQG--LVPNVVTYTTMIAGLAKVGNITDACSLF 799

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV-VAGGSVSSGGCYSSL 347
           +R +A G  P+  + + LI+G        EAY + ++  + G  ++   C S L
Sbjct: 800 ERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLL 853



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 4/260 (1%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN V+       D+ A +++++ M ++           ++       RL+DA  +   M+
Sbjct: 117 YNAVLPFLSH--DLAAMEKVLEEMSVLGYGVPNPACADLVSALVRTRRLDDAERVIAAMR 174

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           R        AY+ L+  +      ERALELL +M++ G +    V  +T++++    +G 
Sbjct: 175 RLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVG--VPLFTTLVRALAREGR 232

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           ++ AL ++D ++     P+ V  +  I  F   GN+D A++   ++ + G       Y+S
Sbjct: 233 VEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTS 292

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++  L +  RL EAE+LF +M      P   A + MI      GQ    + L + +++ G
Sbjct: 293 MIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERG 352

Query: 407 FLSSVDSDIHSVLLLGLCRK 426
            + SV S    +  LG  RK
Sbjct: 353 CIPSVVSFNSILTCLGKKRK 372


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 180/355 (50%), Gaps = 9/355 (2%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CV +     V+ +   KA++  +A  V  +M +    PDTI Y  +I  F +   M  A 
Sbjct: 429 CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEAR 488

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L+  M      P  +TY S++ GFC    + +A  +   M+  GC   L  +++LL   
Sbjct: 489 KLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 548

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
              G  E A ++L EM   G  C+P+V+ YTS+I +    G + EA  + D M   GCAP
Sbjct: 549 LSKGRAEEAYQVLTEMTARG--CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAP 606

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           + +T  T+I+ F   GN++ A ++++ +   G       Y+SL+   V+ +R+ +A  ++
Sbjct: 607 DALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVY 666

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED-IEKIGFLSSVDSDIHSVLLLGL 423
            +M+ASG+KP+ +  +V++  L   G+    F L+++ +EK     ++ S  +++L+ GL
Sbjct: 667 DRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVS--YTILIDGL 724

Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD----EELITNLPKIG 474
            +     EA    + M+ + I  +      ++  L K+G     ++L+ ++ K+G
Sbjct: 725 GKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLG 779



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 141/274 (51%), Gaps = 12/274 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++ R+     +++ +VE          ++   ++     +A   ++A+ + + +  +  
Sbjct: 275 CKLGRVDDGLKLLLQMVECDN----FPDIQTYNILVAGFSRANRLDDALELFKLLSSYGC 330

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P+   Y  +I+       +  A  + +     D   D+I+Y ++IKG  ++ R+++AC 
Sbjct: 331 KPNAATYTTIIQ------GLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACE 384

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF+ +K  GC+ N+VAY+A++DG+ + G +E  L+   +M   G  C P   TYT VI  
Sbjct: 385 LFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMS--GSSCVPTRTTYTVVIDG 442

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C   M+ +A  + ++M   GC P+ +T +TLI GF     +DEA +L+D ++  G   +
Sbjct: 443 LCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPT 502

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
              Y S+V    +   + EA+++ ++M   G +P
Sbjct: 503 AVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEP 536



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 38/291 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +IF LC KA   +EA  + + +    +    + YN+++  +C+ G +    +L+  M   
Sbjct: 235 LIFALC-KAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVEC 293

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           D +PDI TY  ++ GF  A RL+DA  LFK++  +GC  N   Y+ ++ G+     ME A
Sbjct: 294 DNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEA 353

Query: 254 LELLGE--------------------------MEK-EGGDCSPNVVTYTSVIQIFCGKGM 286
                E                           EK +   CSPNVV YT+VI      G 
Sbjct: 354 KAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGR 413

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +++ L   + M    C P R T + +I G C    L +A ++ +++V  G V     Y++
Sbjct: 414 IEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTT 473

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
           L+    +  ++ EA KL   ML  G +P  +            G ++ GFC
Sbjct: 474 LIDGFSKASKMDEARKLLDVMLTKGPEPTAVTY----------GSIVHGFC 514



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 126/256 (49%), Gaps = 3/256 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+  L++M    L PD +  N V+   C+   +  A EL   M  +   P I++Y ++I
Sbjct: 3   EALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVI 62

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G  +  ++++A   F  M  +GC  +++A++ L+ G C+ G  +    LL +  K    
Sbjct: 63  SGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR--- 119

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+V  YTSVI  +C  G +     IL+ M A GC P+      LI   C  G +DEAY
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAY 179

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L +++   G +     + +L+  L    +L EA +L+ +M+  G +P       +I  L
Sbjct: 180 ELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFAL 239

Query: 387 CLGGQVLEGFCLYEDI 402
           C  G+V E   +Y+ +
Sbjct: 240 CKAGKVDEANEIYQTV 255



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 185/379 (48%), Gaps = 22/379 (5%)

Query: 69  CFPSQSQMGIRFFIWAALQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEG 124
           C   Q Q+G    +  AL+  +R   F+Y       C+   +     I+ +++ A    G
Sbjct: 101 CKAGQPQVG-HMLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAA----G 154

Query: 125 CVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           C+       V+ + LC+  R+ +EA  +  +M +     D + +  +I      G +  A
Sbjct: 155 CIPDAAAYFVLIDPLCKLGRV-DEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEA 213

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            EL + M      P +    S+I   C AG++++A  +++ +     A + VAY++L+DG
Sbjct: 214 CELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDG 273

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+LG ++  L+LL +M +   D  P++ TY  ++  F     + +AL +   + + GC 
Sbjct: 274 YCKLGRVDDGLKLLLQMVE--CDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCK 331

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN  T +T+I+G      ++EA    D+ +   S      Y++++  L  +KR+ EA +L
Sbjct: 332 PNAATYTTIIQGLYDAQRMEEAKAFFDEALDVIS------YTTVIKGLADSKRIDEACEL 385

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F K+  +G  P+ +A + +I  L   G++ +G   +ED+     + +  +  ++V++ GL
Sbjct: 386 FEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTT--YTVVIDGL 443

Query: 424 CRKNHSVEAAKLARFMLKK 442
           C+     +A K+   M++K
Sbjct: 444 CKAQMLPDACKVFEQMVQK 462



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 138/316 (43%), Gaps = 39/316 (12%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
            +V    ++   C K  + NEA  V+ +M E    P   I+ +++  +  KG    A ++
Sbjct: 502 TAVTYGSIVHGFC-KLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 560

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           +  M      PD+I Y S+I    + GR+ +A  +F  M   GCA + + Y  ++    +
Sbjct: 561 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 620

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
           +G++E A E+L  M K G    P+   Y S++  +     + +A G+ DRM A G  PN 
Sbjct: 621 IGNVEAAGEILELMAKSG--VGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNA 678

Query: 307 VTISTLIKGFCVEGNLDEAYQL--------------------IDKVVAGGSVSSG----- 341
           VT + L+ G   +G  D A+ L                    ID +   G VS       
Sbjct: 679 VTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQ 738

Query: 342 -----------GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
                        Y+SL+  L +  R+ EA+KL   M+  GV PD  A S +I  L    
Sbjct: 739 EMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSS 798

Query: 391 QVLEGFCLYEDIEKIG 406
            V   + +++++ K G
Sbjct: 799 MVDTAWDVFQEMMKRG 814



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 163/364 (44%), Gaps = 18/364 (4%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D ++     G +  V    ++ N   KAR  ++A+ +  +MP     P  + YN VI  
Sbjct: 5   LDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISG 64

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF-KVMKRHGCAA 232
                 M  A +    M      PD+I + ++I GFC AG+ +    L  + +KR     
Sbjct: 65  LASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF--RP 122

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++  Y++++ G C+ G ++   ++L EM   G  C P+   Y  +I   C  G + EA  
Sbjct: 123 DVFLYTSVIHGYCKAGDLDTGFKILEEMLAAG--CIPDAAAYFVLIDPLCKLGRVDEAYE 180

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + +RM   GC  + VT  TLI+     G LDEA +L  +++  G         SL+  L 
Sbjct: 181 LFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALC 240

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF-CLYEDIEKIGFLSSV 411
           +  ++ EA +++  ++A  V    +A + ++   C  G+V +G   L + +E   F    
Sbjct: 241 KAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNF---P 297

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFM---------LKKRIWLQGPYVDKIVEHLKKSG 462
           D   +++L+ G  R N   +A +L + +               +QG Y  + +E  K   
Sbjct: 298 DIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFF 357

Query: 463 DEEL 466
           DE L
Sbjct: 358 DEAL 361



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 155/361 (42%), Gaps = 23/361 (6%)

Query: 39  LQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIR-----FFIWAALQSSYRHS 93
           L K P   E T  T  + +   C +++++      +QM  R      FI+ +L S Y   
Sbjct: 495 LTKGP---EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSK 551

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
                RA E  +          V+      GC   V +   + +L        EA  V  
Sbjct: 552 ----GRAEEAYQ----------VLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFD 597

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M E    PD + Y  +I+ F + G++ AA E+++ M    + PD   Y S++ G+    
Sbjct: 598 SMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLE 657

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           R++ A G++  M   G   N V ++ L+ G+ + G  +RA  L  EM  E  +  P +V+
Sbjct: 658 RVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEM-LEKDEVPPTLVS 716

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YT +I      G + EA      M   G  P   T ++LI      G + EA +L++ +V
Sbjct: 717 YTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMV 776

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G       YS+L+  L+ +  +  A  +F +M+  G  P+ +   V+ R     G+ L
Sbjct: 777 KLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRAL 836

Query: 394 E 394
           +
Sbjct: 837 D 837



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 135/266 (50%), Gaps = 7/266 (2%)

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           M  A + +K M    L PD++    ++ G C A +++ A  LF  M   GC   +V+Y+ 
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           ++ G+  +  M+ A +    M   G  C P+V+ +T++I  FC  G  +    +L+  +A
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNG--CEPDVIAFTTLIHGFCKAGQPQVGHMLLN--QA 116

Query: 300 LG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           L    P+    +++I G+C  G+LD  ++++++++A G +     Y  L+  L +  R+ 
Sbjct: 117 LKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVD 176

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
           EA +LF +M  SG   D +    +I  L   G++ E   LY ++ + G+   +  ++   
Sbjct: 177 EAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYL--EVQDS 234

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRI 444
           L+  LC+     EA ++ + ++ K++
Sbjct: 235 LIFALCKAGKVDEANEIYQTVVAKKV 260



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 18/344 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C++ R+ +      ++ E  ++ GC+   V  M +I  L    +L +EA  + R+M E  
Sbjct: 170 CKLGRVDE----AYELFERMRKSGCLGDYVTFMTLIEALSNHGKL-DEACELYREMIERG 224

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             P   + +++I   C+ G +  A+E+ + +    +    + Y S++ G+C  GR++D  
Sbjct: 225 YEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGL 284

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M       ++  Y+ L+ G  R   ++ ALEL   +   G  C PN  TYT++IQ
Sbjct: 285 KLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYG--CKPNAATYTTIIQ 342

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                  M+EA    D  EAL    + ++ +T+IKG      +DEA +L +K+   G   
Sbjct: 343 GLYDAQRMEEAKAFFD--EAL----DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSP 396

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC-L 398
           +   Y++++  L++  R+++  K F  M  S   P     +V+I  LC   Q+L   C +
Sbjct: 397 NVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLC-KAQMLPDACKV 455

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +E + + G +   D+  ++ L+ G  + +   EA KL   ML K
Sbjct: 456 FEQMVQKGCVP--DTITYTTLIDGFSKASKMDEARKLLDVMLTK 497


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 140/281 (49%), Gaps = 4/281 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + +  ++   C+   +  A EL++ M     +P+ + +  ++   C  GR  +A G 
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGY 67

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M+  G +  +V Y+ L+DG C+   + RALE+L EM   G +  PN VTY + +   
Sbjct: 68  IETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHE--PNHVTYNTFLHGL 125

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G + +AL +   M       +    +TLI G C  G L EAY L+D++   G V   
Sbjct: 126 CKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKP 185

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
           GCY++++  L +  R+ EA KLF +M  SG+ PD L   +M+   C G ++ +   L + 
Sbjct: 186 GCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQ 245

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           ++  G   +    I++ L+  L R     EA +L + M+ +
Sbjct: 246 MKSAGL--APREVIYNTLIDALNRAGRVSEAYRLLQEMISR 284



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 137/273 (50%), Gaps = 4/273 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
            ++VE   E GC  +  +   I + LC++ R A EA   +  M    + P  + YN +I 
Sbjct: 30  FELVEVMAERGCFPNALVFNGIMDALCKEGRSA-EAYGYIETMRSMGVSPTIVTYNILID 88

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            FC++  +  A E+++ M      P+ +TY + + G C  G+++DA  LF+ M       
Sbjct: 89  GFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRL 148

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++  Y+ L+DG+C+ G +  A  LL EME  G  C P    Y +++   C    + EA  
Sbjct: 149 DVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG--CVPKPGCYNAILSWLCKGSRINEAHK 206

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +  RM   G  P+ +T   ++ G+C    +D+A  L+ ++ + G       Y++L+  L 
Sbjct: 207 LFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALN 266

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           R  R+ EA +L  +M++ G+ P+    ++M ++
Sbjct: 267 RAGRVSEAYRLLQEMISRGLSPNSRTYALMRKQ 299



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 139/282 (49%), Gaps = 4/282 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+GC+ +V    ++ + LC+  RL  +A  ++  M E    P+ +++N ++   C++G  
Sbjct: 3   EKGCIPTVVTFGILVDGLCKANRL-TDAFELVEVMAERGCFPNALVFNGIMDALCKEGRS 61

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A   ++ M  + + P I+TY  +I GFC   +L  A  + + M   G   N V Y+  
Sbjct: 62  AEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTF 121

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           L G+C+ G ++ AL L   M ++      +V  YT++I   C  G + EA  +LD ME  
Sbjct: 122 LHGLCKYGKVDDALALFRAMTEK--KIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENS 179

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GC P     + ++   C    ++EA++L  ++   G +     +  +V    R  R+ +A
Sbjct: 180 GCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDA 239

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
             L  +M ++G+ P  +  + +I  L   G+V E + L +++
Sbjct: 240 LLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEM 281



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   GC   +V +  L+DG+C+   +  A EL+  M + G  C PN + +  ++   C +
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERG--CFPNALVFNGIMDALCKE 58

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G   EA G ++ M ++G +P  VT + LI GFC E  L  A +++ ++   G   +   Y
Sbjct: 59  GRSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTY 118

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++ +  L +  ++ +A  LF  M    ++ D    + +I  LC  G++ E + L +++E 
Sbjct: 119 NTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMEN 178

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI---WL 446
            G +       ++ +L  LC+ +   EA KL + M    I   WL
Sbjct: 179 SGCVPK--PGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWL 221



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 37/196 (18%)

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C P VVT+  ++   C    + +A  +++ M   GC PN +  + ++   C EG   EAY
Sbjct: 6   CIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAY 65

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
             I+ + + G   +   Y+ L+    + ++L  A ++  +M   G +P+ +         
Sbjct: 66  GYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVT-------- 117

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
                                        ++  L GLC+     +A  L R M +K+I L
Sbjct: 118 -----------------------------YNTFLHGLCKYGKVDDALALFRAMTEKKIRL 148

Query: 447 QGPYVDKIVEHLKKSG 462
                  +++ L ++G
Sbjct: 149 DVYGYTTLIDGLCQAG 164


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 153/297 (51%), Gaps = 4/297 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V M   I +   K +L NEA  +  +M    + PD + YN +I  FC  G M  A +L 
Sbjct: 211 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLF 270

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M   ++ P++ T+  ++ GFC   RL++A  +  +M + G   ++  Y++L+D  C +
Sbjct: 271 NKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLV 330

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             + +A  +   + + G   +PN+ +Y+ +I  FC    + EA+ +   M      P+ V
Sbjct: 331 KEVNKAKHIFNTISQRG--VNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVV 388

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T ++LI G C  G +  A +L+D++   G       Y+S++  L +  ++ +A  L +KM
Sbjct: 389 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 448

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
              G++PD    + ++  LC  G++ +   ++ED+   G++  +D +I++ ++ G C
Sbjct: 449 KDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYI--LDVNIYTAMIQGFC 503



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 129/246 (52%), Gaps = 3/246 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C++ RL  EA  VL  M +  ++PD   YN+++  +C   ++  A  +   +    + P
Sbjct: 292 FCKERRLK-EAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNP 350

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +I +Y  MI GFC   ++++A  LFK M  +    ++V Y++L+DG+C+LG +  AL+L+
Sbjct: 351 NIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLV 410

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM   G     + +TY S++   C    + +A+ +L +M+  G  P+  T +TL+ G C
Sbjct: 411 DEMHDRG--VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLC 468

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G L++A  + + ++  G +     Y++++          E+  L SKM  +G  P+ +
Sbjct: 469 KNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAV 528

Query: 378 ACSVMI 383
              ++I
Sbjct: 529 TYEIII 534



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 142/292 (48%), Gaps = 4/292 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           +  VL K+ +    P+ I    +I+  C KG +  A +    +  +  + + ++Y ++I 
Sbjct: 126 SFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLIN 185

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G+   A  L + +       N+V Y+ ++D +C++  +  A +L  EM  +G   
Sbjct: 186 GLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG--I 243

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+VVTY ++I  FC  G MK+A  + ++M      PN  T + L+ GFC E  L EA  
Sbjct: 244 SPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKN 303

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           ++  ++  G       Y+SL+      K + +A+ +F+ +   GV P+  + S+MI   C
Sbjct: 304 VLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFC 363

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
              +V E   L++++     +  V +  ++ L+ GLC+      A KL   M
Sbjct: 364 KIKKVDEAMNLFKEMHCNNIIPDVVT--YNSLIDGLCKLGKISYALKLVDEM 413



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 130/311 (41%), Gaps = 70/311 (22%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P I  +  ++     +        L + M+ +G  ++LV  S L++   +LG    +  +
Sbjct: 70  PSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSV 129

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L ++ K G +  PNV+T T++I+  C KG + +AL   D++ ALG   N+V+  TLI G 
Sbjct: 130 LAKILKMGYE--PNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGL 187

Query: 317 C--------------VEGNL---------------------DEAYQLIDKVVAGGSVSSG 341
           C              V+G L                     +EA+ L  ++V+ G     
Sbjct: 188 CKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDV 247

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC-------------- 387
             Y++L+       ++K+A  LF+KM+   + P+    ++++   C              
Sbjct: 248 VTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAM 307

Query: 388 -----------LGGQVLEGFCLYEDIEKIGFLSS------VDSDIH--SVLLLGLCRKNH 428
                          +++ +CL +++ K   + +      V+ +IH  S+++ G C+   
Sbjct: 308 MMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKK 367

Query: 429 SVEAAKLARFM 439
             EA  L + M
Sbjct: 368 VDEAMNLFKEM 378



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 120/259 (46%), Gaps = 43/259 (16%)

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           +++ +     ++  +  +L  + +       + L  +ME  G   + ++V  + +I  F 
Sbjct: 61  RLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNG--ITSDLVILSILINCFS 118

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA-------- 334
             G    +  +L ++  +G  PN +T++TLIKG C++G + +A Q  DKVVA        
Sbjct: 119 QLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKV 178

Query: 335 -GGSVSSGGC--------------------------YSSLVVELVRTKRLKEAEKLFSKM 367
             G++ +G C                          Y++++  + + K + EA  L+S+M
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 238

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCR 425
           ++ G+ PD +  + +I   C+ G++ +   L+  +       +++ ++++  +L+ G C+
Sbjct: 239 VSKGISPDVVTYNALISGFCIVGKMKDATDLFNKM----IFENINPNVYTFNILVDGFCK 294

Query: 426 KNHSVEAAKLARFMLKKRI 444
           +    EA  +   M+K+ I
Sbjct: 295 ERRLKEAKNVLAMMMKQGI 313



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 11/132 (8%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM-----IAADELMKGMGL 192
           LC+  ++ ++A+ +L KM +  ++PD   Y  ++   C+ G +     +  D L+KG  L
Sbjct: 432 LCKNHQV-DKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYIL 490

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
                D+  Y +MI+GFC+ G  +++  L   M+ +GC  N V Y  ++  +      ++
Sbjct: 491 -----DVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDK 545

Query: 253 ALELLGEMEKEG 264
           A +LL EM   G
Sbjct: 546 AEKLLREMITRG 557


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 170/339 (50%), Gaps = 21/339 (6%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL---MKGMGLIDLYPDIITYV 203
           +A+ +LR+M    L PD   YN VIR FCE  ++  A EL   MKG G       ++T+ 
Sbjct: 160 KAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSG---CSWSLVTWG 216

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            +I  FC AG++++A G  K MK  G  A+LV Y++L+ G C  G ++R   L  E+ + 
Sbjct: 217 ILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLER 276

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G   SP  +TY ++I+ FC  G +KEA  I + M   G  PN  T + LI G C  G   
Sbjct: 277 GD--SPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTK 334

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           EA QL++ ++      +   Y+ ++ +L +   + +A ++   M     +PD +  ++++
Sbjct: 335 EALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILL 394

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK- 442
             LC  G + E   L   + K    +  D   ++ L+ GLC++N   +A  +   +++K 
Sbjct: 395 GGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKL 454

Query: 443 ----RI--------WLQGPYVDKIVEHLKKSGDEELITN 469
               R+         L+   V+K +E  K+  D +++ N
Sbjct: 455 GAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRN 493



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 165/320 (51%), Gaps = 18/320 (5%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++    K  GC  S+    ++ +   KA   +EAM  L++M    L  D ++Y ++IR 
Sbjct: 197 LELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRG 256

Query: 174 FCEKGDMIAADELMKGMGLIDLY------PDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           FC+ G      EL +G  L D        P  ITY ++I+GFC  G+L++A  +F+ M  
Sbjct: 257 FCDCG------ELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIE 310

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   N+  Y+ L+DG+C +G  + AL+LL  M ++  D  PN VTY  +I   C  G++
Sbjct: 311 RGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEK--DEEPNAVTYNIIINKLCKDGLV 368

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC--YS 345
            +A+ I++ M+     P+ +T + L+ G C +G+LDEA +L+  ++   S +      Y+
Sbjct: 369 ADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYN 428

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           +L+  L +  RL +A  ++  ++      D +  ++++      G V +   L++ I   
Sbjct: 429 ALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDS 488

Query: 406 GFLSSVDSDIHSVLLLGLCR 425
             +   +SD ++ ++ G C+
Sbjct: 489 KIVR--NSDTYTAMIDGFCK 506



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 147/278 (52%), Gaps = 6/278 (2%)

Query: 166 IYNNVIRL--FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
           +YN+ I L   C   +   A  L++ M    L PD+ +Y ++I+GFC    LE A  L  
Sbjct: 142 VYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELAN 201

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            MK  GC+ +LV +  L+D  C+ G M+ A+  L EM+  G     ++V YTS+I+ FC 
Sbjct: 202 EMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMG--LEADLVVYTSLIRGFCD 259

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G +     + D +   G +P  +T +TLI+GFC  G L EA ++ + ++  G   +   
Sbjct: 260 CGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYT 319

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+ L+  L    + KEA +L + M+    +P+ +  +++I +LC  G V +   + E ++
Sbjct: 320 YTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMK 379

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           K    +  D+  +++LL GLC K    EA+KL   MLK
Sbjct: 380 KRR--TRPDNITYNILLGGLCAKGDLDEASKLLYLMLK 415



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 6/247 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           ++  +  ++KG C       A  L + M+R+    ++ +Y+ ++ G C    +E+ALEL 
Sbjct: 141 NVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELA 200

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM+  G  CS ++VT+  +I  FC  G M EA+G L  M+ +G   + V  ++LI+GFC
Sbjct: 201 NEMK--GSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFC 258

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G LD    L D+V+  G       Y++L+    +  +LKEA ++F  M+  GV+P+  
Sbjct: 259 DCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVY 318

Query: 378 ACSVMIRELCLGGQVLEGFCLYE-DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
             + +I  LC  G+  E   L    IEK    ++V    +++++  LC+     +A ++ 
Sbjct: 319 TYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAV---TYNIIINKLCKDGLVADAVEIV 375

Query: 437 RFMLKKR 443
             M K+R
Sbjct: 376 ELMKKRR 382



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 162/359 (45%), Gaps = 15/359 (4%)

Query: 58  DSTCVI--EVLHRCFPSQSQMG-----IRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP 110
           DS C I    L R F    Q+        F I   ++ +    + + +  C + + K+  
Sbjct: 278 DSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEAL 337

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
            ++  ++E  +E   V       +I N   K  L  +A+ ++  M +   RPD I YN +
Sbjct: 338 QLLNLMIEKDEEPNAVT----YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLY--PDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           +   C KGD+  A +L+  M     Y  PD+I+Y ++I G C   RL  A  ++ ++   
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
             A + V  + LL+   + G + +A+EL  ++         N  TYT++I  FC  GM+ 
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISD--SKIVRNSDTYTAMIDGFCKTGMLN 511

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            A G+L +M      P+    + L+   C EG+LD+A++L +++    +      ++ ++
Sbjct: 512 VAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMI 571

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
              ++   +K AE L   M  +G+ PD    S +I      G + E    ++ +   GF
Sbjct: 572 DGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGF 630



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 180/378 (47%), Gaps = 23/378 (6%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+   + +  ++  +V+E   +  C ++   +  I   C+  +L  EA  +   M E  +
Sbjct: 258 CDCGELDRGKALFDEVLER-GDSPCAITYNTL--IRGFCKLGQL-KEASEIFEFMIERGV 313

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           RP+   Y  +I   C  G    A +L+  M   D  P+ +TY  +I   C  G + DA  
Sbjct: 314 RPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVE 373

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + ++MK+     + + Y+ LL G+C  G ++ A +LL  M K+     P+V++Y ++I  
Sbjct: 374 IVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHG 433

Query: 281 FCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            C +  + +AL I D + E LG A +RVT + L+      G++++A +L  ++     V 
Sbjct: 434 LCKENRLHQALDIYDLLVEKLG-AGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVR 492

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y++++    +T  L  A+ L  KM  S ++P     + ++  LC  G + + + L+
Sbjct: 493 NSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLF 552

Query: 400 EDIEK-------IGFLSSVD-----SDIHSV--LLLGLCRKNHSVEAAKLARFMLKKRIW 445
           E++++       + F   +D      DI S   LL+G+ R   S +    ++ + +   +
Sbjct: 553 EEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINR---F 609

Query: 446 LQGPYVDKIVEHLKKSGD 463
           L+  Y+D+ +    K  D
Sbjct: 610 LKLGYLDEAISFFDKMVD 627



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 3/190 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K  + N A  +L KM   +L+P    YN ++   C++G +  A  L + M   + +PD++
Sbjct: 506 KTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVV 565

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           ++  MI G   AG ++ A  L   M R G + +L  YS L++   +LG ++ A+    +M
Sbjct: 566 SFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKM 625

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC-VE 319
              G +  P+     SV++    +G   +   ++ ++       ++    T++   C   
Sbjct: 626 VDSGFE--PDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNSS 683

Query: 320 GNLDEAYQLI 329
            N+D A +L+
Sbjct: 684 ANMDLAKRLL 693



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 107/229 (46%), Gaps = 4/229 (1%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           E A   ++ M       N V+ S LL+   ++     A  +L  M K G   + NV  + 
Sbjct: 89  ELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRG--FAFNVYNHN 146

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +++  C      +A+ +L  M      P+  + +T+I+GFC    L++A +L +++   
Sbjct: 147 ILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGS 206

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   S   +  L+    +  ++ EA     +M   G++ D +  + +IR  C  G++  G
Sbjct: 207 GCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRG 266

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             L++++ + G   S  +  ++ L+ G C+     EA+++  FM+++ +
Sbjct: 267 KALFDEVLERG--DSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGV 313


>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 180/384 (46%), Gaps = 8/384 (2%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV---IFNLCEKAR 143
           ++ YR     +N A +         +I  + E   E G    V +  V   I   C   +
Sbjct: 219 EAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCNDNK 278

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           ++  A  +LR+  E  L P    +N +I  FC++ +     EL+  M + +  PDI TY 
Sbjct: 279 VS-RAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQ 337

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            +I GFC       A  +F  +K  G A ++V Y+ L+ G C++G +E A +L  EM  +
Sbjct: 338 EIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDK 397

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G    PN  +Y ++I  FC  G + EA+ +  +M   G     ++ +TLI G C+ G  D
Sbjct: 398 G--FLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTD 455

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           EAY    ++     V     Y++L+    R  ++ ++  L  ++ A G++P   + + +I
Sbjct: 456 EAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLI 515

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           ++LC  G V E   ++ D+   G    V +  H  ++ GLC + + VE  +    MLK  
Sbjct: 516 QKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDH--IISGLCEQGYVVEGMEWLITMLKSN 573

Query: 444 IWLQGPYVDKIVEHLKKSGDEELI 467
           +  Q     K+++ L + G E L+
Sbjct: 574 LKPQKETFYKLIQSLIQIGKELLL 597



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 166/364 (45%), Gaps = 9/364 (2%)

Query: 76  MGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI 135
           + +RFF+W + Q  +       N+      + +  + +      Y  E       +   I
Sbjct: 141 LSLRFFLWLSSQPEFLPHPVSCNKL--FDALLEAKACVPAKSFLYSFEFSPEPASLENYI 198

Query: 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
             +CE   L  EA++    + E   RP    +N   +   + G      +L +GM    +
Sbjct: 199 RCVCEGG-LVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGV 257

Query: 196 YPD--IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             D  I T   +I+ FCN  ++  A  + +     G      A++ L+ G C+  +  R 
Sbjct: 258 QKDVDIETVGYLIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRV 317

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           LEL+  M  +  +  P++ TY  +I  FC   M  +A  + + ++  G AP+ V  +TLI
Sbjct: 318 LELVHTMIVKNRN--PDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLI 375

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC  G L++A +L  +++  G + +   Y++L+    +   L EA KL+ KML SG K
Sbjct: 376 HGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYK 435

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
              L+C+ +I  LCL G+  E +  + ++     +  V +  ++ L+ G CR+   +++ 
Sbjct: 436 ETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVIT--YNTLIQGFCREGKVLQST 493

Query: 434 KLAR 437
            L +
Sbjct: 494 DLLK 497


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 117/479 (24%), Positives = 213/479 (44%), Gaps = 58/479 (12%)

Query: 2   PRFSLSRILSSSVNIKNSKIFALHFTTASPAE----------------RFYTHLQKNPNN 45
           PRF ++ +++  +  ++      H    +P E                R+YT L KN + 
Sbjct: 39  PRFDVA-VIADLIEKQHWSKLGFHVKDINPNELFRQLISSELNPDLCLRYYTWLVKNRD- 96

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSR 105
                  +   L+ T   ++LH    ++    IR F+   +++   H       A  M  
Sbjct: 97  -------ISVSLELT--FKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCD 147

Query: 106 IKQNPSIIIDVV--------------EAYKEEG------CVVSVKMMKVIFNLCEKARLA 145
                SII D++              EA+K  G        +S K + V   L ++ R A
Sbjct: 148 NVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVA--LLKQNRSA 205

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            +  ++ ++M    ++P+   +N VI   C+ G M  A ++M+ M +    P++++Y ++
Sbjct: 206 -DVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTL 264

Query: 206 IKGFCN---AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
           I G+C     G++  A  + K M  +  + NL  ++ L+DG  +  ++  +L++  EM  
Sbjct: 265 IDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLD 324

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
           +  D  PNV+TY S+I   C  G + EA+G+ D+M + G  PN +T  +LI GFC  G +
Sbjct: 325 Q--DVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMM 382

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            EA  + D V   G+  +   Y+ L+    +  ++ +   L  +M   G+ PD    + +
Sbjct: 383 KEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCL 442

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           I  LC  G +     L++ +   G    V      +L+ G C +  S +AA L + M K
Sbjct: 443 IAGLCRNGNIEAAKKLFDQLTNKGLPDLV---TFHILMEGYCSRGESRKAAMLLKEMSK 498



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 173/378 (45%), Gaps = 47/378 (12%)

Query: 106 IKQNPSIIIDVVEAYKE---EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLR 161
           +KQN S   DV   YKE        +V    V+ N LC+  ++ N+A  V+  M  +   
Sbjct: 199 LKQNRSA--DVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKM-NKARDVMEDMKVYGYS 255

Query: 162 PDTIIYNNVIRLFCE---KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           P+ + YN +I  +C+    G M  AD ++K M   ++ P++ T+  +I GF     L  +
Sbjct: 256 PNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGS 315

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             +FK M       N++ Y++L++G+C  G +  A+ +  +M   G    PN++TY S+I
Sbjct: 316 LKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAG--VQPNLITYHSLI 373

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             FC  GMMKEAL + D ++  G  P     + LI  +C  G +D+ + L +++   G V
Sbjct: 374 NGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIV 433

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSK-------------------------------- 366
              G Y+ L+  L R   ++ A+KLF +                                
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILMEGYCSRGESRKAAMLL 493

Query: 367 --MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
             M   G+KP  L  ++M++  C  G +     +   +EK   L  ++   ++VLL G  
Sbjct: 494 KEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRL-RMNVASYNVLLQGYS 552

Query: 425 RKNHSVEAAKLARFMLKK 442
           +K    +A  L   ML+K
Sbjct: 553 QKGKLEDANMLLNEMLEK 570



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 109/216 (50%), Gaps = 9/216 (4%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+ ++ K +G   + +M  ++ +   K    ++   +  +M    + PD   YN +I  
Sbjct: 386 LDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAG 445

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G++ AA +L   +    L PD++T+  +++G+C+ G    A  L K M + G    
Sbjct: 446 LCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPR 504

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            + Y+ ++ G C+ G+++ A  +  +MEKE      NV +Y  ++Q +  KG +++A  +
Sbjct: 505 HLTYNIMMKGYCKEGNLKAATNMRTQMEKE-RRLRMNVASYNVLLQGYSQKGKLEDANML 563

Query: 294 LDRMEALGCAPNRVTISTLI-----KGFC--VEGNL 322
           L+ M   G  PNR+T   +      KGF   +EG+L
Sbjct: 564 LNEMLEKGLVPNRITYEIVKEEMVDKGFVPDIEGHL 599


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 163/310 (52%), Gaps = 18/310 (5%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC  S+    ++ +   KA   +EAM +L++M    L  D I+Y ++IR FC+ G     
Sbjct: 207 GCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCG----- 261

Query: 184 DELMKGMGLIDLY------PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
            EL +G  L D        P  ITY ++I+GFC  GRL++A  +F+ M   G   N+  Y
Sbjct: 262 -ELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTY 320

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG+C +G  + AL+LL  M ++  D  PNVVTY  +I   C   ++ +AL I++ M
Sbjct: 321 TGLIDGLCGVGKTKEALQLLNLMLQK--DEEPNVVTYNIIINKLCKDSLVADALEIVELM 378

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG--CYSSLVVELVRTK 355
           +     P+ +T ++L+ G C +G+LDEA +L+  ++   S +      +++L+  L +  
Sbjct: 379 KKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGN 438

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           RL +A  ++  ++      D +  ++++      G V +   L++ I     +   +SD 
Sbjct: 439 RLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVP--NSDT 496

Query: 416 HSVLLLGLCR 425
           ++ ++ G C+
Sbjct: 497 YTTMIDGFCK 506



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 151/296 (51%), Gaps = 2/296 (0%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A+ +LR+M +  L PD + YN VIR FCE  ++  A +L   M        ++T+  +I
Sbjct: 160 KAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILI 219

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
             FC AG++++A GL K MK  G  A+L+ Y++L+ G C  G ++R   L  E+ + G  
Sbjct: 220 DAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGD- 278

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            SP  +TY ++I+ FC  G +KEA  I + M   G  PN  T + LI G C  G   EA 
Sbjct: 279 -SPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEAL 337

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           QL++ ++      +   Y+ ++ +L +   + +A ++   M     +PD +  + ++  L
Sbjct: 338 QLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGL 397

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           C  G + E   L   + K    +  D    + L+ GLC+ N   +A  +   +++K
Sbjct: 398 CAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEK 453



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 147/275 (53%), Gaps = 4/275 (1%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +++  C   +   A  L++ M    L PD+++Y ++I+GFC    LE A  L   M+
Sbjct: 145 YNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQ 204

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             GC+ +LV +  L+D  C+ G M+ A+ LL EM+ +G     +++ YTS+I+ FC  G 
Sbjct: 205 GSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKG--LEADLIVYTSLIRGFCDCGE 262

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +     + D +   G +P  +T +TLI+GFC  G L EA ++ + ++  G   +   Y+ 
Sbjct: 263 LDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTG 322

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+  L    + KEA +L + ML    +P+ +  +++I +LC    V +   + E ++K  
Sbjct: 323 LIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRR 382

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
             +  D+  ++ LL GLC K    EA+KL   MLK
Sbjct: 383 --TRPDNITYNSLLGGLCAKGDLDEASKLLYLMLK 415



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 128/250 (51%), Gaps = 12/250 (4%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           ++  Y  ++KG C       A  L + M+++    ++V+Y+ ++ G C    +E+AL+L 
Sbjct: 141 NVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLA 200

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM+  G  CS ++VT+  +I  FC  G M EA+G+L  M+  G   + +  ++LI+GFC
Sbjct: 201 NEMQGSG--CSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFC 258

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G LD    L D+V+  G       Y++L+    +  RLKEA ++F  M+  GV+P+  
Sbjct: 259 DCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVY 318

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD----IHSVLLLGLCRKNHSVEAA 433
             + +I  LC  G+  E   L      +  +   D +     +++++  LC+ +   +A 
Sbjct: 319 TYTGLIDGLCGVGKTKEALQL------LNLMLQKDEEPNVVTYNIIINKLCKDSLVADAL 372

Query: 434 KLARFMLKKR 443
           ++   M K+R
Sbjct: 373 EIVELMKKRR 382



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 141/288 (48%), Gaps = 7/288 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           EE  VV+  +  +I  LC K  L  +A+ ++  M +   RPD I YN+++   C KGD+ 
Sbjct: 348 EEPNVVTYNI--IINKLC-KDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLD 404

Query: 182 AADELMKGMGLIDLY--PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
            A +L+  M     Y  PD+I++ ++I G C   RL  A  ++ ++     A ++V  + 
Sbjct: 405 EASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNI 464

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           LL+   + G + +A+EL  ++        PN  TYT++I  FC  GM+  A G+L +M  
Sbjct: 465 LLNSTLKSGDVNKAMELWKQISNS--KIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRL 522

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
               P+    + L+   C +G LD+A++L +++    S      ++ ++   ++   +K 
Sbjct: 523 SELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKS 582

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           AE L   M  +G+ PD    S +I      G + E    ++ +   GF
Sbjct: 583 AESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGF 630



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 149/305 (48%), Gaps = 6/305 (1%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+   + +  ++  +V+E   +  C ++   +  I   C+  RL  EA  +   M E  +
Sbjct: 258 CDCGELDRGKALFDEVLER-GDSPCAITYNTL--IRGFCKLGRL-KEASEIFEFMMERGV 313

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           RP+   Y  +I   C  G    A +L+  M   D  P+++TY  +I   C    + DA  
Sbjct: 314 RPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALE 373

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + ++MK+     + + Y++LL G+C  G ++ A +LL  M K+     P+V+++ ++I  
Sbjct: 374 IVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHG 433

Query: 281 FCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            C    + +AL I D + E LG A + VT + L+      G++++A +L  ++     V 
Sbjct: 434 LCKGNRLHQALDIYDLLVEKLG-AGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVP 492

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y++++    +T  L  A+ L  KM  S + P     + ++  LC  G + + + L+
Sbjct: 493 NSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLF 552

Query: 400 EDIEK 404
           E++++
Sbjct: 553 EEMQR 557



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 114/233 (48%), Gaps = 6/233 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+ +R+ Q     +D+ +   E+     +    ++ N   K+   N+AM + +++    +
Sbjct: 435 CKGNRLHQ----ALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKI 490

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P++  Y  +I  FC+ G +  A  L+  M L +L P +  Y  ++   C  G L+ A  
Sbjct: 491 VPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWR 550

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF+ M+R     ++++++ ++DG  + G ++ A  LL  M   G   SP++ TY+ +I  
Sbjct: 551 LFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAG--LSPDLFTYSKLINR 608

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           F   G + EA+   D+M   G  P+     +++K    +G  D+  + + K+V
Sbjct: 609 FLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKLTEFVKKLV 661



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 123/277 (44%), Gaps = 39/277 (14%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           NN++       +   A    + M   D + + ++   +++ F    +   A G+  +M +
Sbjct: 76  NNLMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLK 135

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G A N+  Y+ LL G+CR     +A+ LL EM +      P+VV+Y +VI+ FC    +
Sbjct: 136 RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNS--LMPDVVSYNTVIRGFCEGKEL 193

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           ++AL + + M+  GC+ + VT   LI  FC  G +DEA  L+ ++   G  +    Y+SL
Sbjct: 194 EKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSL 253

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +        L   + LF ++L  G  P  +  + +IR          GFC      K+G 
Sbjct: 254 IRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIR----------GFC------KLGR 297

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           L                      EA+++  FM+++ +
Sbjct: 298 LK---------------------EASEIFEFMMERGV 313



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 3/190 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K  + N A  +L KM   +L P    YN ++   C+KG +  A  L + M   D +PD+I
Sbjct: 506 KTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVI 565

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           ++  MI G   AG ++ A  L   M   G + +L  YS L++   +LG ++ A+    +M
Sbjct: 566 SFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKM 625

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC-VE 319
              G +  P+     SV++    +G   +    + ++       ++    T++   C   
Sbjct: 626 IDSGFE--PDAHICDSVLKYCISQGETDKLTEFVKKLVDKDVVLDKELTCTVMDYMCSSS 683

Query: 320 GNLDEAYQLI 329
           GN+D A +L+
Sbjct: 684 GNMDIAKRLL 693


>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 193/400 (48%), Gaps = 15/400 (3%)

Query: 40  QKNP-NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGI---RFFIWAALQSSYRHSSF 95
            ++P +++E +L     ++ +  V +VL RC    + +G    RFF+WA     ++HS  
Sbjct: 53  HRHPRHDLELSLTPFSTQISTDLVEQVLKRC----NHLGFSAHRFFLWAKSIPGFQHSVQ 108

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEE--GCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
            ++   E+    +  +I+ D +   +E    C ++ ++  +IF    +A L + A+    
Sbjct: 109 SFHILVEILGRSKQFAILWDFLIETRESDSSCKITNEIFWIIFTAYSRADLPDGAIRSFV 168

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M EF ++P  I  + ++   C+K  +  A +    +    L     TY  +I G+   G
Sbjct: 169 RMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQVKSHFLLT-TKTYSILINGWGKIG 227

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
               A  LF  M   GC  +L+AY+ LL+ +C+ G ++ A++ L +M  +     P+  T
Sbjct: 228 DSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAMDFLNDMLSKK--VEPDAFT 285

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y+  I+ +C    +  A G+LD+M      PN  T + +IK  C    ++EAYQL+D+++
Sbjct: 286 YSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCIIKRLCKIKKVEEAYQLLDEMI 345

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           + G       Y+++         +  A KL S+M      PD    +++++ L   G+  
Sbjct: 346 SSGLKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPDRHTYNMVLKLLIRIGRFD 405

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           +   ++E +    F  SV +  +SV++ GLC+K   +E A
Sbjct: 406 KATEVWECMGDKKFYPSVST--YSVMIHGLCKKKGKLEEA 443



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 119/250 (47%), Gaps = 3/250 (1%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           +++ K   ++ N   K   + +A  +   M E     D + YNN++   C+ G +  A +
Sbjct: 210 LLTTKTYSILINGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAMD 269

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
            +  M    + PD  TY   I+ +C+A  +  A G+   M+R     N+  Y+ ++  +C
Sbjct: 270 FLNDMLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCIIKRLC 329

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           ++  +E A +LL EM   G    P+  +Y ++    C    +  AL ++ RME   C P+
Sbjct: 330 KIKKVEEAYQLLDEMISSG--LKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPD 387

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLF 364
           R T + ++K     G  D+A ++ + +       S   YS ++  L + K +L+EA K F
Sbjct: 388 RHTYNMVLKLLIRIGRFDKATEVWECMGDKKFYPSVSTYSVMIHGLCKKKGKLEEACKYF 447

Query: 365 SKMLASGVKP 374
           + M+  G+ P
Sbjct: 448 AMMIDEGIPP 457


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 189/373 (50%), Gaps = 30/373 (8%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKE---EGCVVSVKMMKVIFN-LCEK 141
           L + Y +++ M +  C+++ +K+        +E Y E   +G + +V    ++ + LC+ 
Sbjct: 260 LPNLYTYNTMM-DGYCKIAHVKK-------ALELYXEMLGDGLLPNVVTFGILIDGLCKT 311

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
             + +   +++  M  F + P+  +YN +I  +C+ G++  A  L   +   ++ PD+ T
Sbjct: 312 DEMVSARKFLI-DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFT 370

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  +IKG C   R+E+A GL + MK+ G   N V Y+ L+DG C+ G+ME+A+E+  +M 
Sbjct: 371 YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMT 430

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           ++G    PN++T++++I  +C  G M+ A+G+   M   G  P+ V  + LI G   +GN
Sbjct: 431 EKG--IEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF-------------SKML 368
             EA++L  ++   G   +    S L+  L +  R+ +A KLF             +++ 
Sbjct: 489 TKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELD 548

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
            S   P+ +  + +I+ LC  G++ +    + D+   G    V + I  V++ G  R  H
Sbjct: 549 RSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCI--VIIQGHFRAMH 606

Query: 429 SVEAAKLARFMLK 441
             +   L   +LK
Sbjct: 607 LRDVMMLQADILK 619



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 163/371 (43%), Gaps = 73/371 (19%)

Query: 134 VIFNLCEKARLANEAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           V+  L +K R   + MW V   M      P+ + Y  +I   C +GD + A  L   M  
Sbjct: 164 VLDGLVKKGRF--DTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIE 221

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             ++P ++ Y  +I+G C   R+ +A  +F+ M+  G   NL  Y+ ++DG C++  +++
Sbjct: 222 KKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKK 281

Query: 253 ALELLGEMEKEG-------------GDCS--------------------PNVVTYTSVIQ 279
           ALEL  EM  +G             G C                     PN+  Y  +I 
Sbjct: 282 ALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLID 341

Query: 280 IFCGKGMMKEAL-----------------------------------GILDRMEALGCAP 304
            +C  G + EAL                                   G+L  M+  G  P
Sbjct: 342 GYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLP 401

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N VT +TLI G+C EGN+++A ++  ++   G   +   +S+L+    +  +++ A  L+
Sbjct: 402 NAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLY 461

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           ++M+  G+ PD +A + +I      G   E F L++++++ G   +V +   S L+ GLC
Sbjct: 462 TEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT--LSCLIDGLC 519

Query: 425 RKNHSVEAAKL 435
           +     +A KL
Sbjct: 520 KDGRISDAIKL 530



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 169/375 (45%), Gaps = 22/375 (5%)

Query: 98  NRACEMSRIKQNPSIIIDVVEA---YKEEGCVVSVKMMKVIFNLCEKARLAN---EAMWV 151
           +R  ++++  Q  S II V+     Y +  C     +M+ +    +K+R +        V
Sbjct: 61  SRRADLAKNPQLYSAIIHVLTGAKLYAKARC-----LMRDLIQCLQKSRRSRICCSVFNV 115

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           L ++      P+  ++  +I  F E G     +E +     +D+ P +     ++ G   
Sbjct: 116 LSRLESSKFTPN--VFGVLIIAFSEMG---LVEEALWVYYKMDVLPAMQACNMVLDGLVK 170

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EKEGGDCSPN 270
            GR +    ++  M   G + N+V Y  L+DG CR G   +A  L  EM EK+     P 
Sbjct: 171 KGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKK---IFPT 227

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           VV YT +I+  CG+  + EA  +   M   G  PN  T +T++ G+C   ++ +A +L  
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYX 287

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +++  G + +   +  L+  L +T  +  A K    M + GV P+    + +I   C  G
Sbjct: 288 EMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAG 347

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
            + E   L+ +IEK   L  V +  +S+L+ GLC  +   EA  L + M KK        
Sbjct: 348 NLSEALSLHSEIEKHEILPDVFT--YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVT 405

Query: 451 VDKIVEHLKKSGDEE 465
            + +++   K G+ E
Sbjct: 406 YNTLIDGYCKEGNME 420



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 123/287 (42%), Gaps = 51/287 (17%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   R+  EA  +L++M +    P+ + YN +I  +C++G+M  A E+   M   
Sbjct: 374 LIKGLCGVDRM-EEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEK 432

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+IIT+ ++I G+C AG++E A GL+  M   G   ++VAY+AL+DG  + G+ + A
Sbjct: 433 GIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEA 492

Query: 254 LELLGEME---------------------------------KEGGD-------------C 267
             L  EM+                                 K G D             C
Sbjct: 493 FRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLC 552

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SPN V YT++IQ  C  G + +A      M   G  P+  T   +I+G     +L +   
Sbjct: 553 SPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMM 612

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           L   ++  G + +   Y  L      +  LK A          GV+P
Sbjct: 613 LQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSF----CGEGVQP 655


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 177/365 (48%), Gaps = 40/365 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LC   R A +   +LR M +  + P+ + YN ++  F  +G ++ A +L+  M   
Sbjct: 269 LIHDLCRSNRSA-KGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTF 327

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVM---------------------------- 225
            L P+ +T+ ++I G  + G  ++A  +F +M                            
Sbjct: 328 GLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLA 387

Query: 226 -------KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
                  KR+G     + Y+ ++DG+C+ G ++ A+ +L EM K+G D  P++VTY+++I
Sbjct: 388 RGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGID--PDIVTYSALI 445

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             FC  G +K A  I+ R+  +G +PN +  STLI   C  G L E  ++ + ++  G+ 
Sbjct: 446 NGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNT 505

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                ++ LV  L +  ++ EAE+    M + G+ P+ ++   +I      G+ L+ F +
Sbjct: 506 PDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSV 565

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
           ++++ K+G   +  +  +  LL GLC+  H + A K  + +      +     + ++  +
Sbjct: 566 FDEMTKVGHHPTFFT--YGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAM 623

Query: 459 KKSGD 463
            KSG+
Sbjct: 624 CKSGN 628



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 164/363 (45%), Gaps = 37/363 (10%)

Query: 81  FIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVI---- 135
           F++ AL ++YR  +              NPS+   ++  Y  EG +  S+++ +++    
Sbjct: 107 FVFGALMATYRLCN-------------SNPSVFDILIRVYLREGMIQDSLEIFRLMGLYG 153

Query: 136 FN----LCEK------ARLANEAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           FN     C            + ++W  L++M +  + PD   +N +I + C +G    + 
Sbjct: 154 FNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSS 213

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            LM+ M      P I+TY +++  +C  GR + A  L   M   G  A++  Y+ L+  +
Sbjct: 214 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDL 273

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           CR     +   LL +M K      PN VTY +++  F  +G +  A  +L+ M   G +P
Sbjct: 274 CRSNRSAKGYLLLRDMRKRM--IHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSP 331

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N VT + LI G   EGN  EA ++   + A G + +   Y  L+  L +      A   +
Sbjct: 332 NHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFY 391

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLG 422
            +M  +GV    +  + MI  LC  G + E   +  ++ K G    +D DI  +S L+ G
Sbjct: 392 MRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDG----IDPDIVTYSALING 447

Query: 423 LCR 425
            CR
Sbjct: 448 FCR 450



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 136/285 (47%), Gaps = 5/285 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CV  +    +I  LC+   L +EA+ +L +M +  + PD + Y+ +I  FC  G +  A 
Sbjct: 400 CVGRITYTGMIDGLCKNGFL-DEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAK 458

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           E++  +  + L P+ I Y ++I   C  G L++   +++ M   G   +   ++ L+  +
Sbjct: 459 EIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSL 518

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G +  A E +  M  +G    PN V++  +I  +   G   +A  + D M  +G  P
Sbjct: 519 CKAGKVAEAEEFMRCMTSDG--ILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHP 576

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVV-AGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
              T  +L+KG C  G+L  A + +  +     +V +  C ++L+  + ++  L +A  L
Sbjct: 577 TFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMC-NTLITAMCKSGNLDKAVSL 635

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
           F +M+   + PD    + +I  LC  G+ +      ++ E  G L
Sbjct: 636 FGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNL 680



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 167/407 (41%), Gaps = 47/407 (11%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMW 150
           +S+ +YN  C M  +K+     I + EA   EG         V + +LC+  ++A EA  
Sbjct: 476 YSTLIYN-CCRMGCLKET----IRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVA-EAEE 529

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
            +R M    + P+ + ++ +I  +   G+ + A  +   M  +  +P   TY S++KG C
Sbjct: 530 FMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 589

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM---------- 260
             G L  A    K ++    A + V  + L+  +C+ G++++A+ L GEM          
Sbjct: 590 KGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSF 649

Query: 261 -----------------------EKEG-GDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
                                  E E  G+  PN V YT  +      G  K       +
Sbjct: 650 TYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQ 709

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M+ LG   + VT + +I G+   G +++ + L+ ++       +   Y+ L+    + K 
Sbjct: 710 MDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKH 769

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
           +  +  L+  M+ SG+ PD L C  +I  +C    +  G      I K      V+ D H
Sbjct: 770 VSTSFMLYRSMILSGILPDKLTCYSIILGICESNMLEIGL----KILKAFICRGVEVDRH 825

Query: 417 SV-LLLGLCRKNHSVEAA-KLARFMLKKRIWLQGPYVDKIVEHLKKS 461
           +  +L+  C  N  +  A  +   M    I L     D IV  L ++
Sbjct: 826 TFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRN 872



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/332 (20%), Positives = 138/332 (41%), Gaps = 39/332 (11%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A  V  +M +    P    Y ++++  C+ G +IAA++ +K +  +    D +   ++I
Sbjct: 561 KAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLI 620

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
              C +G L+ A  LF  M +     +   Y++L+ G+CR G    A+    E E  G +
Sbjct: 621 TAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARG-N 679

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PN V YT  +      G  K       +M+ LG   + VT + +I G+   G +++ +
Sbjct: 680 LVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTH 739

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC------- 379
            L+ ++       +   Y+ L+    + K +  +  L+  M+ SG+ PD L C       
Sbjct: 740 DLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGI 799

Query: 380 ----------------------------SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
                                       +++I + C  G++   F +   +  +G   S+
Sbjct: 800 CESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGI--SL 857

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           D +    ++  L R NH  + +++    + K+
Sbjct: 858 DKNTCDAIVSVLNR-NHRFQESRMVLHEMSKQ 888



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 148/378 (39%), Gaps = 78/378 (20%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK-GMGL 192
           +I  +C+   L ++A+ +  +M +  + PD+  Y ++I   C KG  + A    K     
Sbjct: 619 LITAMCKSGNL-DKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEAR 677

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
            +L P+ + Y   + G   AG+ +      + M + G   ++V  +A++DG  R+G +E+
Sbjct: 678 GNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEK 737

Query: 253 ALELLGEMEKEGGDCSPNVVTYT-----------------------------------SV 277
             +LL EM  +  +  PN+ TY                                    S+
Sbjct: 738 THDLLFEMGNQ--NQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSI 795

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG- 336
           I   C   M++  L IL      G   +R T + LI   C  G ++ A+ +++ + + G 
Sbjct: 796 ILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGI 855

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD--------------------- 375
           S+    C  ++V  L R  R +E+  +  +M   G+ P+                     
Sbjct: 856 SLDKNTC-DAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAF 914

Query: 376 --------------GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
                          +A S M+R L   G+  E   L   + K+  + ++ S   + L+ 
Sbjct: 915 VVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIAS--FTTLMH 972

Query: 422 GLCRKNHSVEAAKLARFM 439
             C+  +  EA +L   M
Sbjct: 973 LFCKNGNVTEALELRVVM 990



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 37/298 (12%)

Query: 151  VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
            +L +M   +  P+   YN ++  + ++  +  +  L + M L  + PD +T  S+I G C
Sbjct: 741  LLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGIC 800

Query: 211  NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL-------------- 256
             +  LE    + K     G   +   ++ L+   C  G +  A ++              
Sbjct: 801  ESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKN 860

Query: 257  ---------------------LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
                                 L EM K+G   SP    Y  ++   C  G +K A  + +
Sbjct: 861  TCDAIVSVLNRNHRFQESRMVLHEMSKQG--ISPESRKYIGLLNGLCRVGDIKTAFVVKE 918

Query: 296  RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
             M A    P  V  S +++     G  DEA  L+  ++    V +   +++L+    +  
Sbjct: 919  EMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNG 978

Query: 356  RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             + EA +L   M   G+K D ++ +V+I  LC  G +   F L+E++++ GFL++V +
Sbjct: 979  NVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTT 1036



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%)

Query: 145  ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            A+EA  +LR M +  L P    +  ++ LFC+ G++  A EL   M    L  D+++Y  
Sbjct: 945  ADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNV 1004

Query: 205  MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
            +I G C  G +  A  LF+ MKR G  AN+  Y AL+ GI   G+
Sbjct: 1005 LITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGGILSQGT 1049



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 2/152 (1%)

Query: 197  PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
            P+   Y+ ++ G C  G ++ A  + + M  H      VA SA++  + + G  + A  L
Sbjct: 892  PESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLL 951

Query: 257  LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
            L  M K      P + ++T+++ +FC  G + EAL +   M   G   + V+ + LI G 
Sbjct: 952  LRSMLKM--KLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGL 1009

Query: 317  CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            C +G++  A++L +++   G +++   Y +LV
Sbjct: 1010 CAKGDMAIAFELFEEMKRDGFLANVTTYKALV 1041



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 128  SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            S K + ++  LC    +   A  V  +M    + P  +  + ++R   + G    A  L+
Sbjct: 894  SRKYIGLLNGLCRVGDIKT-AFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLL 952

Query: 188  KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
            + M  + L P I ++ +++  FC  G + +A  L  VM   G   +LV+Y+ L+ G+C  
Sbjct: 953  RSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGLCAK 1012

Query: 248  GSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
            G M  A EL  EM+++G     NV TY +++
Sbjct: 1013 GDMAIAFELFEEMKRDG--FLANVTTYKALV 1041



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 109/264 (41%), Gaps = 9/264 (3%)

Query: 60   TCVIEVLHRCFPSQSQMGIRF---FIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDV 116
            TC   +L  C  +  ++G++    FI   ++      + + ++ C    I        D+
Sbjct: 791  TCYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINW----AFDM 846

Query: 117  VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
            V      G  +       I ++  +     E+  VL +M +  + P++  Y  ++   C 
Sbjct: 847  VNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCR 906

Query: 177  KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
             GD+  A  + + M    + P  +   +M++     G+ ++A  L + M +      + +
Sbjct: 907  VGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIAS 966

Query: 237  YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
            ++ L+   C+ G++  ALEL   M   G     ++V+Y  +I   C KG M  A  + + 
Sbjct: 967  FTTLMHLFCKNGNVTEALELRVVMSNCG--LKLDLVSYNVLITGLCAKGDMAIAFELFEE 1024

Query: 297  MEALGCAPNRVTISTLIKGFCVEG 320
            M+  G   N  T   L+ G   +G
Sbjct: 1025 MKRDGFLANVTTYKALVGGILSQG 1048



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 78/180 (43%), Gaps = 6/180 (3%)

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C+ N   +  +I+++  +GM++++L I   M   G  P+  T + ++            +
Sbjct: 119 CNSNPSVFDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVW 178

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
             + +++          ++ L+  L      K++  L  KM  SG  P  +  + ++   
Sbjct: 179 SFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWY 238

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           C  G+      L + +     L  V++D+  +++L+  LCR N S +   L R M K+ I
Sbjct: 239 CKKGRFKAAIELLDHMN----LKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMI 294


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 179/366 (48%), Gaps = 10/366 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIII-DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVL 152
           + + N  C+M R++     I  ++ + ++ +     V     +  LC+   +++ A+ V+
Sbjct: 269 NVLINGYCKMGRVEDALGYIQKEIADGFEPD----QVTYNTFVHCLCQNGHVSH-ALKVM 323

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
             M +    PD   YN VI    + G++  A  ++  M      PD  T+ ++I   C+ 
Sbjct: 324 DLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQ 383

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            RLE+A  L + +   G + ++  ++ L++ +C++G     + L  EM+  G  C+P+ V
Sbjct: 384 NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSG--CAPDEV 441

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TY  +I   C  G +  AL +L  ME+ GC  + VT +T+I   C +  ++EA ++ D++
Sbjct: 442 TYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQM 501

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            A G   S   +++L+  L + KR+ +A +L  +M+  G++P  +  + ++   C  G +
Sbjct: 502 DAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDL 561

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452
            +   + E +   GF   +D   +  L+ GLC+   +  A KL R M  K I       +
Sbjct: 562 KKAADILETMTANGF--EIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYN 619

Query: 453 KIVEHL 458
            +++ L
Sbjct: 620 PVIQSL 625



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 150/314 (47%), Gaps = 7/314 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C  +R+++     +D+      +G    V    ++ N   K    +  + +  +M     
Sbjct: 381 CSQNRLEE----ALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGC 436

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD + YN +I   C  G ++ A +L+K M         +TY ++I   C   R+E+A  
Sbjct: 437 APDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEE 496

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +F  M  HG + + V ++ L+DG+C+   ++ A EL+ +M KEG    P+ +TY S++  
Sbjct: 497 VFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEG--LQPSNITYNSILTH 554

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +C +G +K+A  IL+ M A G   + VT  TLI G C  G    A +L+  +   G   +
Sbjct: 555 YCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPT 614

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL-GGQVLEGFCLY 399
              Y+ ++  L R   L++A  LF +M   G  PD L   ++ R LC  GG + E F   
Sbjct: 615 PKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFL 674

Query: 400 EDIEKIGFLSSVDS 413
            ++   GF+    S
Sbjct: 675 VEMVNKGFMPEFSS 688



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 182/407 (44%), Gaps = 42/407 (10%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
           Y H   + N   E SR+K   S+  ++ +   +   V    ++K    LC +A     A+
Sbjct: 163 YNH---LLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKA---LC-RAHQVRTAV 215

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            +L +M    + PD   +  +++ F E+G + AA  +   M      P  +T   +I G+
Sbjct: 216 LMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGY 275

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C  GR+EDA G  +     G   + V Y+  +  +C+ G +  AL+++  M +EG D  P
Sbjct: 276 CKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHD--P 333

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +V TY +VI      G + EA GI+++M   GC P+  T +TLI   C +  L+EA  L 
Sbjct: 334 DVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLA 393

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            ++   G       ++ L+  L +        +LF +M +SG  PD +  +++I  LC  
Sbjct: 394 RELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSM 453

Query: 390 GQVLEGFCLYEDIEKIG-------FLSSVDS-----------------DIHSV------- 418
           G+++    L +++E  G       + + +D+                 D H +       
Sbjct: 454 GKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTF 513

Query: 419 --LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             L+ GLC+     +A +L   M+K+ +       + I+ H  K GD
Sbjct: 514 NTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGD 560



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 161/358 (44%), Gaps = 36/358 (10%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR-KMPEFDLRPDTIIYNNVIRLF 174
           +V   + EG      +++       + R  ++A+ ++R ++  F ++ DT +YN+++ + 
Sbjct: 111 LVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVL 170

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            E   M   + +   M    + PD++T  ++IK  C A ++  A  + + M  H  A + 
Sbjct: 171 AEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDE 230

Query: 235 VAYSALLDGICRLGSMERALEL--------------------------------LGEMEK 262
             ++ L+ G    GS+E AL +                                LG ++K
Sbjct: 231 TTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQK 290

Query: 263 EGGD-CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           E  D   P+ VTY + +   C  G +  AL ++D M   G  P+  T +T+I      G 
Sbjct: 291 EIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGE 350

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           LDEA  +++++V  G +     +++L+V L    RL+EA  L  ++   G+ PD    ++
Sbjct: 351 LDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNI 410

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +I  LC  G    G  L+E+++  G   + D   +++L+  LC     V A  L + M
Sbjct: 411 LINALCKVGDPHLGIRLFEEMKSSG--CAPDEVTYNILIDHLCSMGKLVNALDLLKEM 466



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 129/285 (45%), Gaps = 4/285 (1%)

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
           A D +   +    +  D   Y  ++       R++    ++  M   G   ++V  + L+
Sbjct: 143 AVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLI 202

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
             +CR   +  A+ +L EM       +P+  T+T+++Q F  +G ++ AL +  +M   G
Sbjct: 203 KALCRAHQVRTAVLMLEEMSSHA--VAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETG 260

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C+P RVT++ LI G+C  G +++A   I K +A G       Y++ V  L +   +  A 
Sbjct: 261 CSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHAL 320

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           K+   ML  G  PD    + +I  L   G++ E   +   +   G L   D+   + L++
Sbjct: 321 KVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLP--DTTTFNTLIV 378

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
            LC +N   EA  LAR +  K +       + ++  L K GD  L
Sbjct: 379 ALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHL 423


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 147/313 (46%), Gaps = 13/313 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KAR    A+ +L  M         + Y  +I   C+ GD+ AA  L++ M   
Sbjct: 16  LIAGLC-KARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADA 74

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+++TY ++I G C A R  DA    K M R GC  +LV Y++L+ G+C    M+ A
Sbjct: 75  GCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDA 134

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +L E+  E G   P+VVTY + I   C  G + + L +L+ M+  G +P+ VT  ++I
Sbjct: 135 GLVLQELMIESGRI-PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSII 193

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C    +D+A+Q+   ++  G V     YS ++  L R  RL   E++   M+ SG  
Sbjct: 194 SGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHY 253

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
                 + +I  L   G +      YE   + G +  V +  H+  +  LCR        
Sbjct: 254 ALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYT--HNAFIGALCRS------- 304

Query: 434 KLARFMLKKRIWL 446
              +F L K I L
Sbjct: 305 --GKFPLAKNILL 315



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 3/233 (1%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M     R D  IYN +I   C+      A EL+  M        ++TY ++I G C +G 
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L+ A  L + M   GCA N+V Y+AL+DG+C+      A++ +  M + G  C P++VTY
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSG--CEPDLVTY 118

Query: 275 TSVIQIFCGKGMMKEA-LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
            S+I   C    M +A L + + M   G  P+ VT +T I G C  G LD+  ++++++ 
Sbjct: 119 NSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMD 178

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            GG       + S++  L +  R+ +A ++F  ML  G  PD L  S+M+  L
Sbjct: 179 RGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNL 231



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 156/314 (49%), Gaps = 8/314 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+   L + A  +L+KM +    P+ + Y  +I   C+      A + +K
Sbjct: 46  VTYTTLIDGLCKSGDL-DAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVK 104

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF--KVMKRHGCAANLVAYSALLDGICR 246
            M      PD++TY S+I G C A R++DA GL   ++M   G   ++V Y+  + G+C+
Sbjct: 105 RMLRSGCEPDLVTYNSLIHGLCMANRMDDA-GLVLQELMIESGRIPDVVTYNTFISGLCK 163

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G +++ LE+L EM++  G  SP+VVT+ S+I   C    + +A  +   M   GC P+ 
Sbjct: 164 AGKLDKGLEMLEEMDR--GGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDS 221

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           +T S ++        LD   ++++ +V  G  +    Y+ L+  L+R   ++ A   + +
Sbjct: 222 LTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQ 281

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
            + +G   +    +  I  LC  G+      +   + + G L ++ S  ++ ++ GLC+ 
Sbjct: 282 AMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLS--YNFVIDGLCKS 339

Query: 427 NHSVEAAKLARFML 440
            +  +A KL+R ML
Sbjct: 340 GNVDDAWKLSRKML 353



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 137/269 (50%), Gaps = 5/269 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D   Y ++I G C A +   A  L  VM  +G  A++V Y+ L+DG+C+ G ++ A  LL
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M   G  C+PNVVTYT++I   C      +A+  + RM   GC P+ VT ++LI G C
Sbjct: 69  QKMADAG--CAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLC 126

Query: 318 VEGNLDEAYQLIDKV-VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           +   +D+A  ++ ++ +  G +     Y++ +  L +  +L +  ++  +M   G+ PD 
Sbjct: 127 MANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDV 186

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +    +I  LC   ++ + F +++ + + G +   DS  +S++L  L R N      ++ 
Sbjct: 187 VTFCSIISGLCKANRIDDAFQVFKGMLERGCVP--DSLTYSIMLDNLSRANRLDTVEEVL 244

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
             M+K   +        ++  L ++GD E
Sbjct: 245 EHMVKSGHYALSATYAPLIHALIRAGDIE 273



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 147/340 (43%), Gaps = 46/340 (13%)

Query: 108 QNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
           + P   I  V+     GC    V    +I  LC   R+ +  + +   M E    PD + 
Sbjct: 94  RRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVT 153

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN  I   C+ G +    E+++ M    + PD++T+ S+I G C A R++DA  +FK M 
Sbjct: 154 YNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGML 213

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG------------------GD-- 266
             GC  + + YS +LD + R   ++   E+L  M K G                  GD  
Sbjct: 214 ERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIE 273

Query: 267 -------------CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
                        C   V T+ + I   C  G    A  IL  M   G  PN ++ + +I
Sbjct: 274 SASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVI 333

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGC------YSSLVVELVRTKRLKEAEKLFSKM 367
            G C  GN+D+A++L  K+     + SG C      +++L+    +  RL +A++L  +M
Sbjct: 334 DGLCKSGNVDDAWKLSRKM-----LDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEM 388

Query: 368 LASGV-KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A  +  PD +  + MI      G + +   L E+++ +G
Sbjct: 389 KAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 154/300 (51%), Gaps = 4/300 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V M   I +   K +L NEA  +  +M    + PD + Y+ +I  FC  G +  A  L 
Sbjct: 195 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLF 254

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M   ++ PD+ T+  ++ GFC  GR+++A  +  +M + G   ++V Y +L+DG C +
Sbjct: 255 NKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLV 314

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             + +A  +   M +  G  + NV +Y  +I  FC    + EA+ +   M      P+ V
Sbjct: 315 KQVNKAKSIFNTMAQ--GGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVV 372

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T ++LI G C  G +  A +L+D++   G       Y+S++  L +  ++ +A  L +KM
Sbjct: 373 TYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 432

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G++PD    +++I  LC GG++ +   ++ED+   G+  +V +  ++V++ G C  +
Sbjct: 433 KDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYT--YTVMIQGFCDND 490



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 156/306 (50%), Gaps = 6/306 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++ +  +I  LC K ++ ++A+    K+       + + Y  +I   C+ G   AA +L+
Sbjct: 126 AITLTTLIKGLCLKGQI-HQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLL 184

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + +    + P+++ Y ++I   C    + +A  L+  M   G + ++V YSAL+ G C L
Sbjct: 185 RRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCIL 244

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +  A+ L  +M  E  + +P+V T++ ++  FC +G +KEA  +L  M   G  P+ V
Sbjct: 245 GKLNDAIGLFNKMISE--EINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVV 302

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T  +L+ G+C+   +++A  + + +  GG  ++   Y+ ++    + K++ EA  LF +M
Sbjct: 303 TYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEM 362

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
               + PD +  + +I  LC  G++     L +++   G     D   ++ +L  LC KN
Sbjct: 363 HCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPH--DKITYNSILDALC-KN 419

Query: 428 HSVEAA 433
           H V+ A
Sbjct: 420 HQVDKA 425



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 2/231 (0%)

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
            +  N+A  +   M +  +  +   YN +I  FC+   +  A  L K M   ++ PD++T
Sbjct: 314 VKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVT 373

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y S+I G C +G++  A  L   M   G   + + Y+++LD +C+   +++A+ LL +M+
Sbjct: 374 YNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMK 433

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            EG    P++ TYT +I   C  G +K+A  I + +   G      T + +I+GFC    
Sbjct: 434 DEG--IQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDL 491

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
            D+A  L+ K+   G + +   Y  +++ L        AEKL  +M+A G+
Sbjct: 492 FDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGL 542



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 137/279 (49%), Gaps = 4/279 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ I    +I+  C KG +  A      +  +  + + + Y ++I G C  G+   A  
Sbjct: 123 EPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQ 182

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L + +       N+V Y+ ++D +C++  +  A +L  EM  +G   SP+VVTY+++I  
Sbjct: 183 LLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG--ISPDVVTYSALISG 240

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC  G + +A+G+ ++M +    P+  T S L+ GFC EG + EA  ++  ++  G    
Sbjct: 241 FCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPD 300

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y SL+      K++ +A+ +F+ M   GV  +  + ++MI   C   +V E   L++
Sbjct: 301 VVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFK 360

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           ++     +  V +  ++ L+ GLC+      A KL   M
Sbjct: 361 EMHCKNIIPDVVT--YNSLIDGLCKSGKISYALKLVDEM 397



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 129/254 (50%), Gaps = 8/254 (3%)

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           I+  P I  +  ++         + A  L + M+ +G A++LV ++ L++   +LG    
Sbjct: 50  INPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHF 109

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           +  +   + K+G +  PN +T T++I+  C KG + +AL   D++ ALG   N+V   TL
Sbjct: 110 SFSVFANILKKGYE--PNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTL 167

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G C  G    A QL+ +V       +   Y++++  + + K + EA  L+S+M++ G+
Sbjct: 168 INGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGI 227

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH--SVLLLGLCRKNHSV 430
            PD +  S +I   C+ G++ +   L+  +        ++ D++  S+L+ G C++    
Sbjct: 228 SPDVVTYSALISGFCILGKLNDAIGLFNKM----ISEEINPDVYTFSILVDGFCKEGRVK 283

Query: 431 EAAKLARFMLKKRI 444
           EA  +   M+K+ I
Sbjct: 284 EAKNVLAMMMKQGI 297



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +     + G   +V+   ++ N   K +  +EAM + ++M   ++ PD + YN++I   C
Sbjct: 323 IFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLC 382

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A +L+  M    +  D ITY S++   C   +++ A  L   MK  G   ++ 
Sbjct: 383 KSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMY 442

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L+DG+C+ G ++ A  +  ++  +G + +  V TYT +IQ FC   +  +AL +L 
Sbjct: 443 TYTILIDGLCKGGRLKDAQNIFEDLLVKGYNIT--VYTYTVMIQGFCDNDLFDKALALLS 500

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +ME  GC PN  T   +I     +   D A +L+ +++A G
Sbjct: 501 KMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARG 541


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 186/389 (47%), Gaps = 65/389 (16%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKE---EGCVVSVKMMKVIFN-LCEK 141
           L + Y +++ M +  C+++ +K+        +E Y+E   +G + +V    ++ + LC+ 
Sbjct: 260 LPNLYTYNTMM-DGYCKIAHVKK-------ALELYQEMLGDGLLPNVVTFGILIDGLCKT 311

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
             + +   +++  M  F + P+  +YN +I  +C+ G++  A  L   +   ++ PD+ T
Sbjct: 312 DEMVSARKFLI-DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFT 370

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  +IKG C   R+E+A GL + MK+ G   N V Y+ L+DG C+ G+ME+A+E+  +M 
Sbjct: 371 YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMT 430

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           ++G    PN++T++++I  +C  G M+ A+G+   M   G  P+ V  + LI G   +GN
Sbjct: 431 EKG--IEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488

Query: 322 LDEAYQ-------------------LIDKVVAGGSVSSG--------------------- 341
             EA++                   LID +   G +S                       
Sbjct: 489 TKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELD 548

Query: 342 --------GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
                     Y++L+  L    R+ +A K FS M  SG++PD   C V+I+       + 
Sbjct: 549 RSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLR 608

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           +   L  DI K+G +   +S ++ VL  G
Sbjct: 609 DVMMLQADILKMGIIP--NSSVYRVLAKG 635



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 163/371 (43%), Gaps = 73/371 (19%)

Query: 134 VIFNLCEKARLANEAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           V+  L +K R   + MW V   M      P+ + Y  +I   C +GD + A  L   M  
Sbjct: 164 VLDGLVKKGRF--DTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIE 221

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             ++P ++ Y  +I+G C   R+ +A  +F+ M+  G   NL  Y+ ++DG C++  +++
Sbjct: 222 KKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKK 281

Query: 253 ALELLGEMEKEG-------------GDCS--------------------PNVVTYTSVIQ 279
           ALEL  EM  +G             G C                     PN+  Y  +I 
Sbjct: 282 ALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLID 341

Query: 280 IFCGKGMMKEAL-----------------------------------GILDRMEALGCAP 304
            +C  G + EAL                                   G+L  M+  G  P
Sbjct: 342 GYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLP 401

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N VT +TLI G+C EGN+++A ++  ++   G   +   +S+L+    +  +++ A  L+
Sbjct: 402 NAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLY 461

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           ++M+  G+ PD +A + +I      G   E F L++++++ G   +V +   S L+ GLC
Sbjct: 462 TEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT--LSCLIDGLC 519

Query: 425 RKNHSVEAAKL 435
           +     +A KL
Sbjct: 520 KDGRISDAIKL 530



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 171/372 (45%), Gaps = 16/372 (4%)

Query: 98  NRACEMSRIKQNPSIIIDVVEA---YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           +R  ++++  Q  S II V+     Y +  C++   +++ + N   ++R+      VL +
Sbjct: 61  SRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMR-DLIQCLQN-SRRSRICCSVFNVLSR 118

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           +      P+  ++  +I  F E G     +E +     +D+ P +     ++ G    GR
Sbjct: 119 LESSKFTPN--VFGVLIIAFSEMG---LVEEALWVYYKMDVLPAMQACNMVLDGLVKKGR 173

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EKEGGDCSPNVVT 273
            +    ++  M   G + N+V Y  L+DG CR G   +A  L  EM EK+     P VV 
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKK---IFPTVVI 230

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YT +I+  CG+  + EA  +   M   G  PN  T +T++ G+C   ++ +A +L  +++
Sbjct: 231 YTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEML 290

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G + +   +  L+  L +T  +  A K    M + GV P+    + +I   C  G + 
Sbjct: 291 GDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLS 350

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
           E   L+ +IEK   L  V +  +S+L+ GLC  +   EA  L + M KK         + 
Sbjct: 351 EALSLHSEIEKHEILPDVFT--YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 454 IVEHLKKSGDEE 465
           +++   K G+ E
Sbjct: 409 LIDGYCKEGNME 420



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 128/293 (43%), Gaps = 52/293 (17%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   R+  EA  +L++M +    P+ + YN +I  +C++G+M  A E+   M   
Sbjct: 374 LIKGLCGVDRM-EEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEK 432

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+IIT+ ++I G+C AG++E A GL+  M   G   ++VAY+AL+DG  + G+ + A
Sbjct: 433 GIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEA 492

Query: 254 LELLGEME---------------------------------KEGGD-------------C 267
             L  EM+                                 K G D             C
Sbjct: 493 FRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLC 552

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SPN V YT++IQ  C  G + +A      M   G  P+  T   +I+G     +L +   
Sbjct: 553 SPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMM 612

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           L   ++  G + +   Y  L      +  LK A +    +  SG+   G+ CS
Sbjct: 613 LQADILKMGIIPNSSVYRVLAKGYEESGYLKSALRCSEDL--SGI---GIGCS 660


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 164/388 (42%), Gaps = 70/388 (18%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +G   S+     + +   +A L  +A+ +  +M E++++P+ + YN +I  +CE+GDM  
Sbjct: 501 KGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSK 560

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E +K M    + PD  +Y  +I G C  G+  +A      + +  C  N + Y+ LL 
Sbjct: 561 AFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLH 620

Query: 243 GICRLGSMERALELLGEMEKEGGDCS---------------------------------P 269
           G CR G +E AL +  EM + G D                                   P
Sbjct: 621 GFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKP 680

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           + V YTS+I      G  KEA GI D M   GC PN VT + +I G C  G ++EA  L 
Sbjct: 681 DDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLC 740

Query: 330 DKVVAGGSVSSG---GC--------------------------------YSSLVVELVRT 354
            K+    SV +    GC                                Y+ L+    R 
Sbjct: 741 SKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQ 800

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            R++EA +L ++M+  GV PD +  + MI ELC    V +   L+  + + G     D  
Sbjct: 801 GRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRP--DRV 858

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            ++ L+ G C      +A +L   ML++
Sbjct: 859 AYNTLIHGCCVAGEMGKATELRNEMLRQ 886



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 152/315 (48%), Gaps = 8/315 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ +++++ +F + P+  +YN +I   C+      A+ L   MG I L P+ +TY  +I
Sbjct: 350 EALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILI 409

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
             FC  G+L+ A      M   G   ++  Y++L++G C+ G +  A   + EM  +   
Sbjct: 410 DMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINK--K 467

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P VVTYTS++  +C KG + +AL +   M   G AP+  T +TL+ G    G + +A 
Sbjct: 468 LEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAV 527

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L +++       +   Y+ ++        + +A +   +M   G+ PD  +   +I  L
Sbjct: 528 KLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGL 587

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           CL GQ  E     + + K      ++   ++ LL G CR+    EA  + + M+++ + L
Sbjct: 588 CLTGQASEAKVFVDGLHKGN--CELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDL 645

Query: 447 Q----GPYVDKIVEH 457
                G  +D  ++H
Sbjct: 646 DLVCYGVLIDGSLKH 660



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 3/246 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C + +L + A+  L +M +  L+     YN++I   C+ GD+ AA+  M  M    L P
Sbjct: 412 FCRRGKL-DTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEP 470

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            ++TY S++ G+C+ G++  A  L+  M   G A ++  ++ LL G+ R G +  A++L 
Sbjct: 471 TVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM +   +  PN VTY  +I+ +C +G M +A   L  M   G  P+  +   LI G C
Sbjct: 531 NEMAE--WNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLC 588

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
           + G   EA   +D +  G    +  CY+ L+    R  +L+EA  +  +M+  GV  D +
Sbjct: 589 LTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLV 648

Query: 378 ACSVMI 383
              V+I
Sbjct: 649 CYGVLI 654



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 154/368 (41%), Gaps = 35/368 (9%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V+ +  + +   K R    AM +   M    +RPD  IY  VIR  CE  D+  A E++ 
Sbjct: 192 VRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIA 251

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M       +I+ Y  +I G C   ++ +A G+ K +       ++V Y  L+ G+C++ 
Sbjct: 252 HMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQ 311

Query: 249 SMERALELLGEM-------------------EKEGG--------------DCSPNVVTYT 275
             E  LE++ EM                    K G                 SPN+  Y 
Sbjct: 312 EFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYN 371

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           ++I   C      EA  + DRM  +G  PN VT S LI  FC  G LD A   + ++V  
Sbjct: 372 ALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDT 431

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   S   Y+SL+    +   +  AE   ++M+   ++P  +  + ++   C  G++ + 
Sbjct: 432 GLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKA 491

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
             LY ++   G   S+ +   + LL GL R     +A KL   M +  +       + ++
Sbjct: 492 LRLYHEMTGKGIAPSIYT--FTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMI 549

Query: 456 EHLKKSGD 463
           E   + GD
Sbjct: 550 EGYCEEGD 557



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 173/388 (44%), Gaps = 22/388 (5%)

Query: 75  QMGIRFFIWAALQSSYRHSSFMY-----------------NRACEMSRIKQNPSIIIDVV 117
           ++G+RFF +  L   + HS+  +                 +    +      PS + +V+
Sbjct: 85  KLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSDVFNVL 144

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCE 176
            +  E+  + S     ++     ++R   + + V + M  +  L P+    + ++    +
Sbjct: 145 FSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVK 204

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
                 A EL   M  + + PD+  Y  +I+  C    L  A  +   M+  GC  N+V 
Sbjct: 205 FRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVP 264

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y+ L+DG+C+   +  A+ +  ++   G D  P+VVTY +++   C     +  L ++D 
Sbjct: 265 YNVLIDGLCKKQKVWEAVGIKKDLA--GKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDE 322

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M  L  +P+   +S+L++G    G ++EA  L+ +VV  G   +   Y++L+  L + ++
Sbjct: 323 MLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRK 382

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
             EAE LF +M   G++P+ +  S++I   C  G++        ++   G   SV    +
Sbjct: 383 FHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYP--Y 440

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + L+ G C+      A      M+ K++
Sbjct: 441 NSLINGHCKFGDISAAEGFMAEMINKKL 468



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 43/228 (18%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD---ELMKGMGLIDLYPDIITYVSMIK 207
           +L++M +  L+PD +IY ++I    + GD   A    +LM   G +   P+ +TY ++I 
Sbjct: 669 LLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCV---PNEVTYTAVIN 725

Query: 208 GFCNAGRLEDA------------------CGLF------------KVMKRH-----GCAA 232
           G C AG + +A                   G F            K ++ H     G  A
Sbjct: 726 GLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLA 785

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y+ L+ G CR G +E A EL+  M  +G   SP+ +TYT++I   C +  +K+A+ 
Sbjct: 786 NTATYNMLIRGFCRQGRIEEASELITRMIGDG--VSPDCITYTTMINELCRRNDVKKAIE 843

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           + + M   G  P+RV  +TLI G CV G + +A +L ++++  G + +
Sbjct: 844 LWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 6/191 (3%)

Query: 123 EGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE-KGDM 180
           EGCV + V    VI  LC KA   NEA  +  KM      P+ + Y   + +  + + DM
Sbjct: 711 EGCVPNEVTYTAVINGLC-KAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDM 769

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A EL   + L  L  +  TY  +I+GFC  GR+E+A  L   M   G + + + Y+ +
Sbjct: 770 QKAVELHNAI-LKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTM 828

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++ +CR   +++A+EL   M ++G    P+ V Y ++I   C  G M +A  + + M   
Sbjct: 829 INELCRRNDVKKAIELWNSMTEKG--IRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQ 886

Query: 301 GCAPNRVTIST 311
           G  PN  T  T
Sbjct: 887 GLIPNNKTSRT 897



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 2/169 (1%)

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P   T+S L+ G     +   A +L + +V+ G       Y+ ++  L   K L  A+++
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEM 249

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
            + M A+G   + +  +V+I  LC   +V E   + +D+   G     D   +  L+ GL
Sbjct: 250 IAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLA--GKDLKPDVVTYCTLVYGL 307

Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
           C+        ++   ML  R       V  +VE L+K G  E   NL K
Sbjct: 308 CKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVK 356


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 146/273 (53%), Gaps = 3/273 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LCE  R ++ A W+LR M +  ++P+ I +  +I  F + G ++ A EL K M  + +YP
Sbjct: 232 LCEIGRWSDAA-WLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYP 290

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ TY ++I G C  GRL++A  +F +M+ +G   N V Y+ L+ G C+   +E   ++ 
Sbjct: 291 DVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIF 350

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM ++G     N +TYT +IQ +C  G    A  + ++M +    P+  T + L+ G C
Sbjct: 351 YEMSQKG--LVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLC 408

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G +++A  +   +       +   Y+ ++  + +  ++++A  LF  + + G+KP+ +
Sbjct: 409 YNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVI 468

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             + MI   C  G + E   L++ +++ GFL +
Sbjct: 469 TYTTMISGFCRRGFIHEADALFKKMKEDGFLPN 501



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 171/363 (47%), Gaps = 22/363 (6%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           ++I + E  +  G    +    ++ N   ++     A   L KM +    PD + + +++
Sbjct: 100 VVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLL 159

Query: 172 RLFCEKG---DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
             FC      D +A  + + GMG     P+++TY ++I   C    L  A  +F  M  +
Sbjct: 160 HGFCHWNRIEDALALFDQIVGMGF---RPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDN 216

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   N+V Y++L+ G+C +G    A  LL +M K G    PNV+T+T++I  F   G + 
Sbjct: 217 GIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRG--IQPNVITFTALIDAFVKVGKIM 274

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           EA  +   M  +   P+  T + LI G C  G LDEA Q+   + + G   +   Y++L+
Sbjct: 275 EAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLI 334

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF- 407
               ++KR+++  K+F +M   G+  + +  +V+I+  CL G+         D+ +  F 
Sbjct: 335 HGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGR--------PDVAQEVFN 386

Query: 408 -----LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
                 +  D   ++VLL GLC   +  +A  + ++M K+ + +       I++ + K G
Sbjct: 387 QMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVG 446

Query: 463 DEE 465
             E
Sbjct: 447 KVE 449



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 159/311 (51%), Gaps = 5/311 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC K R  N A+ +  +M +  +RP+ + YN+++   CE G    A  L++
Sbjct: 188 VTYTTLIHCLC-KNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLR 246

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P++IT+ ++I  F   G++ +A  L+KVM +     ++  Y+AL++G+C  G
Sbjct: 247 DMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYG 306

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ A ++   ME  G    PN VTYT++I  FC    +++   I   M   G   N +T
Sbjct: 307 RLDEARQMFYLMESNG--YYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTIT 364

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + LI+G+C+ G  D A ++ +++ +  +      Y+ L+  L     +++A  +F  M 
Sbjct: 365 YTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMR 424

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
              +  + +  +++I+ +C  G+V + F L+  +   G   +V +  ++ ++ G CR+  
Sbjct: 425 KREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVIT--YTTMISGFCRRGF 482

Query: 429 SVEAAKLARFM 439
             EA  L + M
Sbjct: 483 IHEADALFKKM 493



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 162/364 (44%), Gaps = 25/364 (6%)

Query: 67  HRCFPSQSQMGIRFFIWAALQSSYRH------SSFMYNRACEMSRIKQNPSIIIDVVEAY 120
           H   P+ S  G  F  W    S+YR        +  +N A ++     +   +  +V+  
Sbjct: 29  HGASPTLSLCG--FCFWIRAFSNYRKILRNGLHNLQFNEALDLFTRMVHSRPLPSIVDFT 86

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +    +  +K   V+ +L E+ ++               + P     N V+   C     
Sbjct: 87  RLLSVIAKMKRFDVVISLFEQMQI-------------LGISPVLYTCNIVMNCVCRSSQP 133

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A   +  M  +   PD++T+ S++ GFC+  R+EDA  LF  +   G   N+V Y+ L
Sbjct: 134 CRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTL 193

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +  +C+   +  A+E+  +M   G    PNVVTY S++   C  G   +A  +L  M   
Sbjct: 194 IHCLCKNRHLNHAVEIFNQMGDNG--IRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKR 251

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN +T + LI  F   G + EA +L   ++          Y++L+  L    RL EA
Sbjct: 252 GIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEA 311

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            ++F  M ++G  P+ +  + +I   C   +V +G  ++ ++ + G ++  ++  ++VL+
Sbjct: 312 RQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVA--NTITYTVLI 369

Query: 421 LGLC 424
            G C
Sbjct: 370 QGYC 373



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 141/298 (47%), Gaps = 6/298 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           NEA+ +  +M      P  + +  ++ +  +         L + M ++ + P + T   +
Sbjct: 64  NEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIV 123

Query: 206 IKGFCNAGR-LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +   C + +    +C L K+MK  G   +LV +++LL G C    +E AL L  ++   G
Sbjct: 124 MNCVCRSSQPCRASCFLGKMMKL-GFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMG 182

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PNVVTYT++I   C    +  A+ I ++M   G  PN VT ++L+ G C  G   +
Sbjct: 183 --FRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSD 240

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  L+  ++  G   +   +++L+   V+  ++ EA++L+  M+   V PD    + +I 
Sbjct: 241 AAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALIN 300

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            LC  G++ E   ++  +E  G+    +   ++ L+ G C+     +  K+   M +K
Sbjct: 301 GLCTYGRLDEARQMFYLMESNGYYP--NEVTYTTLIHGFCKSKRVEDGTKIFYEMSQK 356


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 156/319 (48%), Gaps = 6/319 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V ++ +  V+ + C K+    +A  +L +M    + PD   YN +I L+C+KG    A
Sbjct: 192 GVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEA 251

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             +   M    + PDI+TY S+I GFC  GR+ +A  LF+ +  +G   N V Y+ L+DG
Sbjct: 252 LGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDG 309

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            CR+  +E AL L   ME EG    P VVTY S+++  C +G +K+A  +L+ M      
Sbjct: 310 YCRVNDLEEALRLREVMEVEG--LHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVE 367

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ VT +TLI  +C  G++  A ++  K++  G       + +L+    +   +  A++ 
Sbjct: 368 PDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEF 427

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
             +ML +G  P     S ++              L +++ + G    VD  ++  L+  L
Sbjct: 428 LFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLF--VDISVYRALIRRL 485

Query: 424 CRKNHSVEAAKLARFMLKK 442
           C+ +    A ++   M  K
Sbjct: 486 CKIDKIESAERIFTLMQGK 504



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 145/284 (51%), Gaps = 7/284 (2%)

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
           SR+ Q+    I V E  +  G    +    V+ N   KARL N    V +KM    + P+
Sbjct: 140 SRMTQDA---IQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPN 196

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
             I+N +I   C+ GD+  A++L+  M    ++PD+ TY ++I  +C  G   +A G+  
Sbjct: 197 IHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQD 256

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M+R G + ++V Y++L+ G CR G M  AL L  E+       +PN VTYT++I  +C 
Sbjct: 257 RMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI----NGATPNHVTYTTLIDGYCR 312

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
              ++EAL + + ME  G  P  VT +++++  C EG + +A +L++++           
Sbjct: 313 VNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVT 372

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
            ++L+    +   +  A K+  KML +G+KPD      +I   C
Sbjct: 373 CNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFC 416



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 169/361 (46%), Gaps = 23/361 (6%)

Query: 83  WAALQSSYRHSSFMYNRACEMSRIK-----QNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137
           W  + +  +H  F   +   + RI       +PS++  VV  + +      +    VIF 
Sbjct: 79  WTMIHTLAKHKQFKTAQNL-LERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIF- 136

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPD----TIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
               +R+  +A+ V   M     +P     T++ N++ +      +M+   ++ K M  +
Sbjct: 137 -YANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAK--ARLTNMVW--KVYKKMVRV 191

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+I  +  +I   C +G +E A  L   M+      +L  Y+ L+   C+ G    A
Sbjct: 192 GVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEA 251

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L +   ME+  G  SP++VTY S+I  FC +G M+EAL +   +   G  PN VT +TLI
Sbjct: 252 LGIQDRMER--GGVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTLI 307

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C   +L+EA +L + +   G       Y+S++ +L    ++K+A +L ++M    V+
Sbjct: 308 DGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVE 367

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD + C+ +I   C  G +     + + + + G     D      L+ G C K H V++A
Sbjct: 368 PDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGL--KPDQFTFKALIHGFC-KLHEVDSA 424

Query: 434 K 434
           K
Sbjct: 425 K 425



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 110/254 (43%), Gaps = 38/254 (14%)

Query: 152 LRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           LR++ E + L P  + YN+++R  CE+G +  A+ L+  M    + PD +T  ++I  +C
Sbjct: 322 LREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYC 381

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G +  A  + K M   G   +   + AL+ G C+L  ++ A E L EM          
Sbjct: 382 KIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEM---------- 431

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
                                  LD     G +P+  T S L+  +  + N +   +L D
Sbjct: 432 -----------------------LD----AGFSPSYSTYSWLVDSYYDQDNKEAVIRLPD 464

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G       Y +L+  L +  +++ AE++F+ M   G+K D +  + +       G
Sbjct: 465 ELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAG 524

Query: 391 QVLEGFCLYEDIEK 404
           + +    + ++++K
Sbjct: 525 KAIAASDMLDEMDK 538



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 6/153 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM V +KM E  L+PD   +  +I  FC+  ++ +A E +  M      P   TY  ++ 
Sbjct: 389 AMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVD 448

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--G 265
            + +    E    L   + R G   ++  Y AL+  +C++  +E A  +   M+ +G  G
Sbjct: 449 SYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKG 508

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           D     V YTS+   +   G    A  +LD M+
Sbjct: 509 DS----VVYTSLAYAYFKAGKAIAASDMLDEMD 537


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 180/355 (50%), Gaps = 9/355 (2%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CV +     V+ +   KA++  +A  V  +M +    PDTI Y  +I  F +   M  A 
Sbjct: 174 CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEAR 233

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L+  M      P  +TY S++ GFC    + +A  +   M+  GC   L  +++LL   
Sbjct: 234 KLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 293

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
              G  E A ++L EM   G  C+P+V+ YTS+I +    G + EA  + D M   GCAP
Sbjct: 294 LSKGRAEEAYQVLTEMTARG--CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAP 351

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           + +T  T+I+ F   GN++ A ++++ +   G       Y+SL+   V+ +R+ +A  ++
Sbjct: 352 DALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVY 411

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED-IEKIGFLSSVDSDIHSVLLLGL 423
            +M+ASG+KP+ +  +V++  L   G+    F L+++ +EK     ++ S  +++L+ GL
Sbjct: 412 DRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVS--YTILIDGL 469

Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG----DEELITNLPKIG 474
            +     EA    + M+ + I  +      ++  L K+G     ++L+ ++ K+G
Sbjct: 470 GKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLG 524



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 179/380 (47%), Gaps = 25/380 (6%)

Query: 100 ACEMSRIKQNPSI-----IIDVVEAYK------EEGCVVSV-KMMKVIFNLCEKARLANE 147
            CE + +  N  I     I  + EAYK      + GC   V     +I   C+  +    
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA--DELMKGMGLIDLYPDIITYVSM 205
              + + +  F  RPD  +Y +VI  +C+ GD+       +     L     D+I+Y ++
Sbjct: 62  HKLLNQALKRF--RPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASL-----DVISYTTV 114

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           IKG  ++ R+++AC LF+ +K  GC+ N+VAY+A++DG+ + G +E  L+   EM   G 
Sbjct: 115 IKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMS--GS 172

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C P   TYT VI   C   M+ +A  + ++M   GC P+ +T +TLI GF     +DEA
Sbjct: 173 SCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEA 232

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L+D ++  G   +   Y S+V    +   + EA+++ ++M   G +P     + ++  
Sbjct: 233 RKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSY 292

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
               G+  E + +  ++   G   + D  +++ L+  L       EA  +   M++K   
Sbjct: 293 YLSKGRAEEAYQVLTEMTARG--CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCA 350

Query: 446 LQGPYVDKIVEHLKKSGDEE 465
                   I+++  K G+ E
Sbjct: 351 PDALTYGTIIQNFSKIGNVE 370



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 152/346 (43%), Gaps = 45/346 (13%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           +++A +M   ++    ++DV+     E   V+     ++   C K  + NEA  V+ +M 
Sbjct: 223 FSKASKMDEARK----LLDVMLTKGPEPTAVTYG--SIVHGFC-KLDMINEAKEVIAQMR 275

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           E    P   I+ +++  +  KG    A +++  M      PD+I Y S+I    + GR+ 
Sbjct: 276 ERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVP 335

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           +A  +F  M   GCA + + Y  ++    ++G++E A E+L  M K G    P+   Y S
Sbjct: 336 EARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSG--VGPDCFAYNS 393

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL-------- 328
           ++  +     + +A G+ DRM A G  PN VT + L+ G   +G  D A+ L        
Sbjct: 394 LMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKE 453

Query: 329 ------------IDKVVAGGSVSSG----------------GCYSSLVVELVRTKRLKEA 360
                       ID +   G VS                    Y+SL+  L +  R+ EA
Sbjct: 454 EVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEA 513

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           +KL   M+  GV PD  A S +I  L     V   + +++++ K G
Sbjct: 514 KKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG 559



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 157/362 (43%), Gaps = 25/362 (6%)

Query: 39  LQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIR-----FFIWAALQSSYRHS 93
           L K P   E T  T  + +   C +++++      +QM  R      FI+ +L S Y   
Sbjct: 240 LTKGP---EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSK 296

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
                RA E  +          V+      GC   V +   + +L        EA  V  
Sbjct: 297 ----GRAEEAYQ----------VLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFD 342

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M E    PD + Y  +I+ F + G++ AA E+++ M    + PD   Y S++ G+    
Sbjct: 343 SMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLE 402

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EKEGGDCSPNVV 272
           R++ A G++  M   G   N V ++ L+ G+ + G  +RA  L  EM EKE  +  P +V
Sbjct: 403 RVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKE--EVPPTLV 460

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           +YT +I      G + EA      M   G  P   T ++LI      G + EA +L++ +
Sbjct: 461 SYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM 520

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           V  G       YS+L+  L+ +  +  A  +F +M+  G  P+ +   V+ R     G+ 
Sbjct: 521 VKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRA 580

Query: 393 LE 394
           L+
Sbjct: 581 LD 582



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
           +GC P  V+ +T+I G      +DEAY+  + ++  G       +++L+    +  + + 
Sbjct: 1   MGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQV 60

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
             KL ++ L    +PD    + +I   C  G +  G+        +   +S+D   ++ +
Sbjct: 61  GHKLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGY-----FRAVTPKASLDVISYTTV 114

Query: 420 LLGLCRKNHSVEAAKL 435
           + GL       EA +L
Sbjct: 115 IKGLADSKRIDEACEL 130


>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 142/245 (57%), Gaps = 4/245 (1%)

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDIITYVSMIKG 208
           ++L      +L P+T I+N +++  C+ GD+ +A E+++ M    + YP++ITY ++I G
Sbjct: 186 FLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLING 245

Query: 209 FCNAGRLEDACGLFKVM-KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            C +GRL++A  LF+ M  +     + + Y+AL++G C    ++RAL+++  M+K G  C
Sbjct: 246 LCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNG--C 303

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +PNV  Y++++  FC +G ++EA  + D M++LG  P+ V  +TLI  FC  G +DEA +
Sbjct: 304 NPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAME 363

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+  +      +    ++ ++  L R  R +EA  +  ++   GV  +  +  +++  LC
Sbjct: 364 LLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLC 423

Query: 388 LGGQV 392
             G++
Sbjct: 424 REGEL 428



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 158/307 (51%), Gaps = 10/307 (3%)

Query: 135 IFNLCEKARLAN----EAMWVLRKMPEFDLR-PDTIIYNNVIRLFCEKGDMIAADELMKG 189
           IFN+  K    N     A  V+ +M +  +  P+ I Y+ +I   C  G +  A EL + 
Sbjct: 202 IFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEE 261

Query: 190 MGLID-LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
           M   D + PD +TY ++I GFC+  +++ A  + + MK++GC  N+  YSAL++G C+ G
Sbjct: 262 MVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEG 321

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E A E+  EM+  G    P+ V YT++I  FC  G + EA+ +L  M    C  + VT
Sbjct: 322 RLEEAKEVFDEMKSLG--LKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVT 379

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + ++ G C EG  +EA  +++++   G   +   Y  ++  L R   L++A +L   ML
Sbjct: 380 FNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLML 439

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             GV P     + ++  LC  G+V +       + ++GF    +S   ++L+  +CR+  
Sbjct: 440 GRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNS--WALLVELICRERK 497

Query: 429 SVEAAKL 435
            + A +L
Sbjct: 498 LLPAFEL 504



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 139/270 (51%), Gaps = 4/270 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +I  LC   RL  EA+ +  +M   D + PD + YN +I  FC    +  A ++M+ M  
Sbjct: 242 LINGLCGSGRL-KEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKK 300

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P++  Y +++ GFC  GRLE+A  +F  MK  G   + V Y+ L++  CR G ++ 
Sbjct: 301 NGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDE 360

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+ELL +M +    C  + VT+  ++   C +G  +EA G+L+R+   G   N+ +   +
Sbjct: 361 AMELLKDMRE--NKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIV 418

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +   C EG L +A QL+  ++  G +      + L+V L    ++ +A      +L  G 
Sbjct: 419 LNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGF 478

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           KP+  + ++++  +C   ++L  F L +D+
Sbjct: 479 KPEPNSWALLVELICRERKLLPAFELLDDL 508



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 141/278 (50%), Gaps = 4/278 (1%)

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGI 244
           L+     ++L P+   +  ++K  C  G ++ A  + + MK+ H    NL+ YS L++G+
Sbjct: 187 LLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGL 246

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C  G ++ A+EL  EM  +     P+ +TY ++I  FC    +  AL I++ M+  GC P
Sbjct: 247 CGSGRLKEAIELFEEMVSKD-QILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNP 305

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N    S L+ GFC EG L+EA ++ D++ + G       Y++L+    R  R+ EA +L 
Sbjct: 306 NVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELL 365

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
             M  +  + D +  +V++  LC  G+  E   + E +   G   +  S  + ++L  LC
Sbjct: 366 KDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKAS--YRIVLNSLC 423

Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           R+    +A +L   ML + +       ++++ HL ++G
Sbjct: 424 REGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAG 461



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + ++E  K+ GC  +V     + N  C++ RL  EA  V  +M    L+PDT+ Y  +I 
Sbjct: 292 LKIMEFMKKNGCNPNVFNYSALMNGFCKEGRL-EEAKEVFDEMKSLGLKPDTVGYTTLIN 350

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            FC  G +  A EL+K M       D +T+  ++ G C  GR E+A G+ + +   G   
Sbjct: 351 FFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYL 410

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N  +Y  +L+ +CR G +++A +L+G M   G    P+  T   ++   C  G + +A+ 
Sbjct: 411 NKASYRIVLNSLCREGELQKATQLVGLMLGRG--VLPHFATSNELLVHLCEAGKVGDAVM 468

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
            L  +  LG  P   + + L++  C E  L  A++L+D +V
Sbjct: 469 ALLGLLELGFKPEPNSWALLVELICRERKLLPAFELLDDLV 509



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 133/275 (48%), Gaps = 5/275 (1%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + N  C   R+K+   +  ++V   K++    ++    +I   C   ++ + A+ ++ 
Sbjct: 240 STLINGLCGSGRLKEAIELFEEMVS--KDQILPDALTYNALINGFCHGEKV-DRALKIME 296

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M +    P+   Y+ ++  FC++G +  A E+   M  + L PD + Y ++I  FC AG
Sbjct: 297 FMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAG 356

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           R+++A  L K M+ + C A+ V ++ +L G+CR G  E A  +L  +  EG     N  +
Sbjct: 357 RVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEG--VYLNKAS 414

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y  V+   C +G +++A  ++  M   G  P+  T + L+   C  G + +A   +  ++
Sbjct: 415 YRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLL 474

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
             G       ++ LV  + R ++L  A +L   ++
Sbjct: 475 ELGFKPEPNSWALLVELICRERKLLPAFELLDDLV 509


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 156/319 (48%), Gaps = 6/319 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V ++ +  V+ + C K+    +A  +L +M    + PD   YN +I L+C+KG    A
Sbjct: 192 GVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEA 251

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             +   M    + PDI+TY S+I GFC  GR+ +A  LF+ +  +G   N V Y+ L+DG
Sbjct: 252 LGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDG 309

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            CR+  +E AL L   ME EG    P VVTY S+++  C +G +K+A  +L+ M      
Sbjct: 310 YCRVNDLEEALRLREVMEVEG--LHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVE 367

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ VT +TLI  +C  G++  A ++  K++  G       + +L+    +   +  A++ 
Sbjct: 368 PDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEF 427

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
             +ML +G  P     S ++              L +++ + G    VD  ++  L+  L
Sbjct: 428 LFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLF--VDISVYRALIRRL 485

Query: 424 CRKNHSVEAAKLARFMLKK 442
           C+ +    A ++   M  K
Sbjct: 486 CKIDKIESAERIFTLMQGK 504



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 145/284 (51%), Gaps = 7/284 (2%)

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
           SR+ Q+    I V E  +  G    +    V+ N   KARL N    V +KM    + P+
Sbjct: 140 SRMTQDA---IQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPN 196

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
             I+N +I   C+ GD+  A++L+  M    ++PD+ TY ++I  +C  G   +A G+  
Sbjct: 197 IHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQD 256

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M+R G + ++V Y++L+ G CR G M  AL L  E+       +PN VTYT++I  +C 
Sbjct: 257 RMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREI----NGATPNHVTYTTLIDGYCR 312

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
              ++EAL + + ME  G  P  VT +++++  C EG + +A +L++++           
Sbjct: 313 VNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVT 372

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
            ++L+    +   +  A K+  KML +G+KPD      +I   C
Sbjct: 373 CNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFC 416



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 169/361 (46%), Gaps = 23/361 (6%)

Query: 83  WAALQSSYRHSSFMYNRACEMSRIK-----QNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137
           W  + +  +H  F   +   + RI       +PS++  VV  + +      +    VIF 
Sbjct: 79  WTMIHTLAKHKQFKTAQNL-LERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIF- 136

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPD----TIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
               +R+  +A+ V   M     +P     T++ N++ +      +M+   ++ K M  +
Sbjct: 137 -YANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAK--ARLTNMVW--KVYKKMVRV 191

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+I  +  +I   C +G +E A  L   M+      +L  Y+ L+   C+ G    A
Sbjct: 192 GVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEA 251

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L +   ME+  G  SP++VTY S+I  FC +G M+EAL +   +   G  PN VT +TLI
Sbjct: 252 LGIQDRMER--GGVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTLI 307

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C   +L+EA +L + +   G       Y+S++ +L    ++K+A +L ++M    V+
Sbjct: 308 DGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVE 367

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD + C+ +I   C  G +     + + + + G     D      L+ G C K H V++A
Sbjct: 368 PDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGL--KPDQFTFKALIHGFC-KLHEVDSA 424

Query: 434 K 434
           K
Sbjct: 425 K 425



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 110/254 (43%), Gaps = 38/254 (14%)

Query: 152 LRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           LR++ E + L P  + YN+++R  CE+G +  A+ L+  M    + PD +T  ++I  +C
Sbjct: 322 LREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYC 381

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G +  A  + K M   G   +   + AL+ G C+L  ++ A E L EM          
Sbjct: 382 KIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEM---------- 431

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
                                  LD     G +P+  T S L+  +  + N +   +L D
Sbjct: 432 -----------------------LDA----GFSPSYSTYSWLVDSYYDQDNKEAVIRLPD 464

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G       Y +L+  L +  +++ AE++F+ M   G+K D +  + +       G
Sbjct: 465 ELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAG 524

Query: 391 QVLEGFCLYEDIEK 404
           + +    + ++++K
Sbjct: 525 KAIAASDMLDEMDK 538



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 6/153 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM V +KM E  L+PD   +  +I  FC+  ++ +A E +  M      P   TY  ++ 
Sbjct: 389 AMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVD 448

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--G 265
            + +    E    L   + R G   ++  Y AL+  +C++  +E A  +   M+ +G  G
Sbjct: 449 SYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKG 508

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           D     V YTS+   +   G    A  +LD M+
Sbjct: 509 DS----VVYTSLAYAYFKAGKAIAASDMLDEMD 537


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           VVS+ ++  I  LC+     + A+ + ++MP    +PD+  Y  +I   C  G++  A E
Sbjct: 155 VVSLNIL--IKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKE 212

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L K M        ++TY S+I G C +  L++A GL + MKR+    N+  YS+L+DG+C
Sbjct: 213 LFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLC 272

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G   +A++LL  M+K+     PN+VTY+++I   C +  ++EA+ ILDRM   G  PN
Sbjct: 273 KGGHSSQAMQLLEVMDKKHH--LPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPN 330

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
                 +I G C  G+  EA   ID++V GG   +   +S
Sbjct: 331 AGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWS 370



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 176/355 (49%), Gaps = 10/355 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  K+E C+V+  +   I     +     +A+ V  KM  F LRP    Y  ++ +  
Sbjct: 72  MLERMKQEKCMVTEDIFLSICRGYGRVHRPLDAIRVFHKMEGFQLRPTQKAYLTILDILV 131

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC-NAGRLEDACGLFKVMKRHGCAANL 234
           E+  +  A    + M  + +   +++   +IK  C N   ++ A  +F+ M   GC  + 
Sbjct: 132 EENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDS 191

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             Y  L++G+CRLG++  A EL  EME++G   S +VVTYTS+I   C    + EA+G+L
Sbjct: 192 YTYGTLINGLCRLGNISEAKELFKEMEQKG--FSASVVTYTSLIHGLCQSNNLDEAIGLL 249

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           + M+     PN  T S+L+ G C  G+  +A QL++ +     + +   YS+L+  L + 
Sbjct: 250 EEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKE 309

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS----- 409
           ++L+EA ++  +M   G+KP+      +I  LC  G   E     +++  +G +S     
Sbjct: 310 RKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEM-VLGGISPNRAS 368

Query: 410 -SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            S+   +H++++ GLC       A +L   M  + I ++    D +V+   K GD
Sbjct: 369 WSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKRGD 423



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 155/302 (51%), Gaps = 14/302 (4%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI-AADELMKGMGLIDLYPDIITYVSMI 206
           A+   R+M E  +    +  N +I+  C+  + + +A  + + M      PD  TY ++I
Sbjct: 139 AIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLI 198

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C  G + +A  LFK M++ G +A++V Y++L+ G+C+  +++ A+ LL EM++   D
Sbjct: 199 NGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKR--ND 256

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PNV TY+S++   C  G   +A+ +L+ M+     PN VT STLI G C E  L EA 
Sbjct: 257 IEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAV 316

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +++D++   G   + G Y  ++  L      +EA     +M+  G+ P+  + S+ +R  
Sbjct: 317 EILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVR-- 374

Query: 387 CLGGQVLEGFCLYEDIEKIG--FLS------SVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            +   V++G C   D  +    +LS      SV+ D    L+   C++    +AA++   
Sbjct: 375 -MHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILEE 433

Query: 439 ML 440
           M+
Sbjct: 434 MV 435



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 9/248 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR-LGSMERALEL 256
           D  T+  +I       +   A G+ + MK+  C   +V     L  ICR  G + R L+ 
Sbjct: 49  DHETFGLIISRLVTVNQFRPAEGMLERMKQEKC---MVTEDIFL-SICRGYGRVHRPLDA 104

Query: 257 LGEMEK-EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           +    K EG    P    Y +++ I   +  +K A+G    M  LG   + V+++ LIK 
Sbjct: 105 IRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKA 164

Query: 316 FCV-EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
            C  +  +D A ++  ++   G       Y +L+  L R   + EA++LF +M   G   
Sbjct: 165 LCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSA 224

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
             +  + +I  LC    + E   L E++++     +V +  +S L+ GLC+  HS +A +
Sbjct: 225 SVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFT--YSSLMDGLCKGGHSSQAMQ 282

Query: 435 LARFMLKK 442
           L   M KK
Sbjct: 283 LLEVMDKK 290


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 166/331 (50%), Gaps = 4/331 (1%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           +  +V++   ++GC  SV    ++          NEA+ +  ++    LRPD   YN +I
Sbjct: 184 LAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAII 243

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           R  C++G    A + ++ +      PD+++Y  +++ F N  R ED   L K M   GC 
Sbjct: 244 RGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCE 303

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            N+V +S L+   CR G +  A+ +L  M+++G   +P+  +Y  +I  FC +G +  A+
Sbjct: 304 PNVVTHSILISSFCREGRVREAVNVLEVMKEKG--LTPDSYSYDPLISAFCKEGRLDLAI 361

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
             L++M + GC P+ V  +T++   C  G  D A  + +K+   G   +   Y+++   L
Sbjct: 362 EYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSAL 421

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
                  +A ++ S+M+  G+ PD +  + +I  LC  G V E   L  D+E   F  +V
Sbjct: 422 WSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTV 481

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            S   +++LLG+C+ +   E  +L   M++K
Sbjct: 482 IS--FNIVLLGMCKAHRVFEGIELLITMVEK 510



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 157/298 (52%), Gaps = 10/298 (3%)

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           +MK++   C   +  NE+++ L  +     +PD ++   +I+ F    ++  A   M+ M
Sbjct: 65  LMKLLNRSCRAGK-HNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKA---MRVM 120

Query: 191 GLIDLY--PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +++ Y  PD+ +Y +MI GF  A +++ A  +F  M+  G + ++V Y+ ++  +C  G
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRG 180

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E A E++ E+ K+G  C P+V+TYT +I+    +G + EAL + D + + G  P+  T
Sbjct: 181 KLELAFEVMDELLKDG--CKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYT 238

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + +I+G C EG  D A   +  + A G       Y+ L+   +   R ++ E+L   M+
Sbjct: 239 YNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMV 298

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
            SG +P+ +  S++I   C  G+V E   + E +++ G   + DS  +  L+   C++
Sbjct: 299 LSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGL--TPDSYSYDPLISAFCKE 354



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 160/332 (48%), Gaps = 8/332 (2%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++++E Y +   V S   M   F+   KA   + A  V  +M      PD + YN +I 
Sbjct: 119 VMEILETYGDPD-VYSYNAMISGFS---KANQIDSANQVFDRMRSRGFSPDVVTYNIMIG 174

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C +G +  A E+M  +      P +ITY  +I+     GR+ +A  LF  +   G   
Sbjct: 175 SLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRP 234

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +L  Y+A++ GIC+ G  +RAL+ +  +   G  C+P+VV+Y  +++ F  K   ++   
Sbjct: 235 DLYTYNAIIRGICKEGMEDRALDFVRHLSARG--CNPDVVSYNILLRSFLNKSRWEDGER 292

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           ++  M   GC PN VT S LI  FC EG + EA  +++ +   G       Y  L+    
Sbjct: 293 LMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFC 352

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  RL  A +   KM++ G  PD +  + ++  LC  G       ++E ++++G   +V 
Sbjct: 353 KEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVR 412

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +  ++ +   L    + ++A ++   M++K I
Sbjct: 413 A--YNTMFSALWSCGNKIKALEMISEMIRKGI 442



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 152/308 (49%), Gaps = 5/308 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  +C++  + + A+  +R +      PD + YN ++R F  K      + LMK M L 
Sbjct: 242 IIRGICKEG-MEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLS 300

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+++T+  +I  FC  GR+ +A  + +VMK  G   +  +Y  L+   C+ G ++ A
Sbjct: 301 GCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLA 360

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +E L +M  +G  C P++V Y +++   C  G    AL + ++++ +GC P     +T+ 
Sbjct: 361 IEYLEKMVSDG--CLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMF 418

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
                 GN  +A ++I +++  G       Y+SL+  L R   + EA  L   M A+  +
Sbjct: 419 SALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQ 478

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P  ++ ++++  +C   +V EG  L   + + G L +  S  + +L+ G+       EA 
Sbjct: 479 PTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETS--YVLLIEGIAYAGWRAEAM 536

Query: 434 KLARFMLK 441
           +LA  + +
Sbjct: 537 ELANSLYR 544



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 4/250 (1%)

Query: 124 GCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC  +V    + I + C + R+  EA+ VL  M E  L PD+  Y+ +I  FC++G +  
Sbjct: 301 GCEPNVVTHSILISSFCREGRV-REAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDL 359

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E ++ M      PDI+ Y +++   C  G  + A  +F+ +   GC   + AY+ +  
Sbjct: 360 AIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFS 419

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            +   G+  +ALE++ EM ++G D  P+ +TY S+I   C  G++ EA+G+L  MEA   
Sbjct: 420 ALWSCGNKIKALEMISEMIRKGID--PDEITYNSLISCLCRDGLVDEAIGLLVDMEATRF 477

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P  ++ + ++ G C    + E  +L+  +V  G + +   Y  L+  +       EA +
Sbjct: 478 QPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAME 537

Query: 363 LFSKMLASGV 372
           L + +   GV
Sbjct: 538 LANSLYRLGV 547



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 131/290 (45%), Gaps = 36/290 (12%)

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C AG+  ++    + +   G   ++V  + L+ G     ++++A+ ++  +E  G    P
Sbjct: 73  CRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG---DP 129

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +V +Y ++I  F     +  A  + DRM + G +P+ VT + +I   C  G L+ A++++
Sbjct: 130 DVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVM 189

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           D+++  G   S   Y+ L+   +   R+ EA +LF ++++ G++PD    + +IR +C  
Sbjct: 190 DELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKE 249

Query: 390 GQ-------------------------VLEGF---CLYEDIEKI---GFLSSVDSDI--H 416
           G                          +L  F     +ED E++     LS  + ++  H
Sbjct: 250 GMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTH 309

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
           S+L+   CR+    EA  +   M +K +       D ++    K G  +L
Sbjct: 310 SILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDL 359



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 2/190 (1%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + I+ +E    +GC+  +     I     K   A+ A+ V  K+ E    P    YN + 
Sbjct: 359 LAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMF 418

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
                 G+ I A E++  M    + PD ITY S+I   C  G +++A GL   M+     
Sbjct: 419 SALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQ 478

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
             +++++ +L G+C+   +   +ELL  M ++G  C PN  +Y  +I+     G   EA+
Sbjct: 479 PTVISFNIVLLGMCKAHRVFEGIELLITMVEKG--CLPNETSYVLLIEGIAYAGWRAEAM 536

Query: 292 GILDRMEALG 301
            + + +  LG
Sbjct: 537 ELANSLYRLG 546



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 3/175 (1%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + +DV E   E GC  +V+    +F+         +A+ ++ +M    + PD I YN++I
Sbjct: 394 LALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLI 453

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
              C  G +  A  L+  M      P +I++  ++ G C A R+ +   L   M   GC 
Sbjct: 454 SCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCL 513

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTSVIQIFCG 283
            N  +Y  L++GI   G    A+EL   + + G   GD S  +     ++ ++ G
Sbjct: 514 PNETSYVLLIEGIAYAGWRAEAMELANSLYRLGVISGDSSKRLNKTFPMLDVYKG 568


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 155/311 (49%), Gaps = 6/311 (1%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           +Q + R +S +    C   R+ Q        +E    +  VVS   +  I  LC+  R+ 
Sbjct: 6   MQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTL--INGLCKLGRV- 62

Query: 146 NEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           + A  + RKM      RP+   YN ++   C++  + AA  ++      D  PD++TY +
Sbjct: 63  DAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNT 122

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           ++      GR+++A   F  M   G    LV+++A++ G+CR   +  ALE+  EM    
Sbjct: 123 LMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDR- 181

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
            D  PN+VTY+ VI   C    + EA  +LDRM + GC P+ V  + L+ GF   G LD 
Sbjct: 182 -DFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDS 240

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  L+ ++V+ G +     Y+ ++ +L +  R+ +A ++F +++A+   P+ +  S +I 
Sbjct: 241 ALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIG 300

Query: 385 ELCLGGQVLEG 395
             C   +V EG
Sbjct: 301 GYCRASRVDEG 311



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 5/307 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-GL 192
           ++  LC   R+A         +     +PD + Y  +I   C+ G + AA +L + M   
Sbjct: 16  ILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAA 75

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P+  TY +++ G C   RL+ A  +    ++   A ++V Y+ L+  + +LG ++ 
Sbjct: 76  GGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDE 135

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           AL    +M +EG    P +V++ ++I   C    + +AL + + M      PN VT S +
Sbjct: 136 ALATFTQMTEEG--YVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVV 193

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G C    LDEA QL+D++V+ G       Y+ LV+      RL  A  L  +M++ G 
Sbjct: 194 IDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGC 253

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD +  +V+I +LC  G+V +   ++   E +    S +   +S L+ G CR +   E 
Sbjct: 254 IPDVVTYTVVIDKLCKVGRVDDAHEIFR--ELVANKCSPNVVTYSALIGGYCRASRVDEG 311

Query: 433 AKLARFM 439
            K+ R M
Sbjct: 312 GKVMREM 318



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 122 EEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           EEG V + V    +I  LC   RLA +A+ V  +M + D  P+ + Y+ VI   C+   +
Sbjct: 145 EEGYVPTLVSFNAIITGLCRARRLA-DALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQL 203

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A +L+  M      PD++ Y  ++ GF  AGRL+ A GL + M   GC  ++V Y+ +
Sbjct: 204 DEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVV 263

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +D +C++G ++ A E+  E+      CSPNVVTY+++I  +C    + E   +   M  +
Sbjct: 264 IDKLCKVGRVDDAHEIFREL--VANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREM 318

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            C PN VT +T+I G  +    +EAY +  ++   G V     Y  L
Sbjct: 319 ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGL 365



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 16/225 (7%)

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   G   N    S +L G+CR G + +ALE   +   E     P+VV+YT++I   C  
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHF-DASLELAHAQPDVVSYTTLINGLCKL 59

Query: 285 GMMKEALGILDRMEAL-GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
           G +  A  +  +M A  GC PN  T + L+ G C +  LD A  +I +            
Sbjct: 60  GRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVT 119

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y++L+  L +  R+ EA   F++M   G  P  ++ + +I  LC   ++ +   ++ ++ 
Sbjct: 120 YNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEM- 178

Query: 404 KIGFLSSVDSDIH------SVLLLGLCRKNHSVEAAKLARFMLKK 442
                  +D D H      SV++ GLC+ +   EA +L   M+ +
Sbjct: 179 -------IDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE 216


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 167/346 (48%), Gaps = 6/346 (1%)

Query: 120 YKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
           Y + G  +      ++ N LC+  +++  A  VL+ +    L P  +IYN +I  +C+ G
Sbjct: 146 YLKNGVTIGDYTCSILLNGLCKDGKVS-IAEEVLQSLVNAGLVPTRVIYNTLINGYCQTG 204

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
           ++  A      M    + PD ITY ++I G C A R+ +A  L   M+ +G    +  ++
Sbjct: 205 ELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFN 264

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            L+D   R G +E+   +L EM++ G    PNVV+Y S++  FC  G + EA+ ILD M 
Sbjct: 265 TLIDAYGRTGQLEKCFIVLSEMQENG--LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMF 322

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
                PN    + +I  +   G  D+A+ L++K+ + G   S   Y+ L+  L    ++ 
Sbjct: 323 HKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQIS 382

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
           EAE++ + +    + PD ++ + +I   C  G + +   L + + K G  S+V +  +  
Sbjct: 383 EAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRT--YHQ 440

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464
           L+ GL       E   L + M++  +       + +VE   K G+E
Sbjct: 441 LISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNE 486



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 142/324 (43%), Gaps = 14/324 (4%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +A    +A+ V  +M E  + P+ I YN +I    + GD+ A   L   M    L P+ I
Sbjct: 27  RAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAI 86

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  ++ G C AGR+ +   L   M       +   YS L DG+ R G  +  L L G+ 
Sbjct: 87  TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKY 146

Query: 261 EKEG---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            K G   GD      T + ++   C  G +  A  +L  +   G  P RV  +TLI G+C
Sbjct: 147 LKNGVTIGD-----YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYC 201

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G L+ A+    ++ +         Y++L+  L + +R+  A+ L  +M  +GV P   
Sbjct: 202 QTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVE 261

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I      GQ+ + F +  ++++ G   +V S  +  ++   C+     EA  +  
Sbjct: 262 TFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS--YGSIVNAFCKNGKIPEAVAILD 319

Query: 438 FMLKKRI----WLQGPYVDKIVEH 457
            M  K +     +    +D  VEH
Sbjct: 320 DMFHKDVLPNAQVYNAIIDAYVEH 343



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 137/312 (43%), Gaps = 11/312 (3%)

Query: 57  LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDV 116
           ++  C    L   F +  QM  R      ++  +   + + N  C+  RI     +++++
Sbjct: 197 INGYCQTGELEGAFSTFGQMKSRH-----IKPDHITYNALINGLCKAERITNAQDLLMEM 251

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
               ++ G   +V+    + +   +     +   VL +M E  L+P+ + Y +++  FC+
Sbjct: 252 ----QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 307

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
            G +  A  ++  M   D+ P+   Y ++I  +   G  + A  L + MK +G + ++V 
Sbjct: 308 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVT 367

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y+ L+ G+C    +  A E++  +        P+ V+Y ++I   C +G + +AL +  R
Sbjct: 368 YNLLIKGLCNQSQISEAEEIINSLSNH--RLIPDAVSYNTLISACCYRGNIDKALDLQQR 425

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M   G      T   LI G    G L+E   L  K++    V S   ++ +V    +   
Sbjct: 426 MHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGN 485

Query: 357 LKEAEKLFSKML 368
             +AE L  +ML
Sbjct: 486 EIKAEDLRKEML 497



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 110/252 (43%), Gaps = 2/252 (0%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+   YN VI      G    A E+   M    + P+ ITY +MI G    G LE    L
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M  HG   N + Y+ LL G+CR G M     LL EM  +     P+  TY+ +    
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQ--KMVPDGFTYSILFDGL 130

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
              G  K  L +  +    G      T S L+ G C +G +  A +++  +V  G V + 
Sbjct: 131 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 190

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++L+    +T  L+ A   F +M +  +KPD +  + +I  LC   ++     L  +
Sbjct: 191 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 250

Query: 402 IEKIGFLSSVDS 413
           ++  G   +V++
Sbjct: 251 MQDNGVNPTVET 262



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 5/206 (2%)

Query: 221 LFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           + + M R G    N  +Y+ ++ G+ R G    A+E+  EM +      PN +TY ++I 
Sbjct: 1   MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERA--VLPNHITYNTMID 58

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                G ++    + D+M   G  PN +T + L+ G C  G + E   L+D++ +   V 
Sbjct: 59  GHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVP 118

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
            G  YS L   L R    K    LF K L +GV      CS+++  LC  G+V     + 
Sbjct: 119 DGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVL 178

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCR 425
           + +   G + +    I++ L+ G C+
Sbjct: 179 QSLVNAGLVPT--RVIYNTLINGYCQ 202



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+ ++  + R  R  +A ++F +M    V P+ +  + MI     GG +  GF L + + 
Sbjct: 18  YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMV 77

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             G     ++  ++VLL GLCR     E + L   M  +++   G     + + L ++GD
Sbjct: 78  CHGL--KPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGD 135

Query: 464 EELITNL 470
            + + +L
Sbjct: 136 SKAMLSL 142


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 167/346 (48%), Gaps = 43/346 (12%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD---MIAADELMKGMG 191
           I  LC+  +L N+A  V+  +  +   P+ + YN +I   C+KG    M  AD ++K M 
Sbjct: 207 INGLCKAGKL-NKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEML 265

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
              + P+ IT+ ++I GFC    +  A   F+ M+R G   N+V Y++L++G+   G ++
Sbjct: 266 ANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLD 325

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
            A+ L  +M   G    PN+VT+ ++I  FC K M+KEA  + D +      PN +T +T
Sbjct: 326 EAIALWDKMVGLG--LKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNT 383

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK------------- 358
           +I  FC  G ++E + L + ++  G   +   Y+ L+  L R + ++             
Sbjct: 384 MIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE 443

Query: 359 ----------------------EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
                                 +AEKL  +ML  GVKP+ +  + ++   C+ G +    
Sbjct: 444 LKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAAL 503

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +   +EK G  ++V +  ++VL+ G C+     +A +L   ML+K
Sbjct: 504 KVRTQMEKEGKRANVVT--YNVLIKGFCKTGKLEDANRLLNEMLEK 547



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 132/245 (53%), Gaps = 2/245 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+ +  KM    L+P+ + +N +I  FC+K  +  A +L   +   DL P+ IT+ +M
Sbjct: 325 DEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTM 384

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC AG +E+   L   M   G   N+  Y+ L+ G+CR  ++  A +LL EME    
Sbjct: 385 IDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENY-- 442

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +   +VVTY  +I  +C  G   +A  +L  M  +G  PN VT +TL+ G+C+EGNL  A
Sbjct: 443 ELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAA 502

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            ++  ++   G  ++   Y+ L+    +T +L++A +L ++ML  G+ P+     V+  E
Sbjct: 503 LKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVVRLE 562

Query: 386 LCLGG 390
           +   G
Sbjct: 563 MLEKG 567



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 126/243 (51%), Gaps = 8/243 (3%)

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS---ME 251
           + P++ T+   I G C AG+L  A  + + +K  G + N+V Y+ L+DG C+ GS   M 
Sbjct: 196 IQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMY 255

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
           RA  +L EM        PN +T+ ++I  FC    +  A    + M+  G  PN VT ++
Sbjct: 256 RADAILKEML--ANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNS 313

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           LI G    G LDEA  L DK+V  G   +   +++L+    + K +KEA KLF  +    
Sbjct: 314 LINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQD 373

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           + P+ +  + MI   C  G + EGF L+  +   G   +V +  ++ L+ GLCR N +V 
Sbjct: 374 LVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVST--YNCLIAGLCR-NQNVR 430

Query: 432 AAK 434
           AAK
Sbjct: 431 AAK 433



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 149/303 (49%), Gaps = 7/303 (2%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K     E  +V ++M +  ++P+   +N  I   C+ G +  A+++++ +      P+I+
Sbjct: 177 KGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIV 236

Query: 201 TYVSMIKGFC---NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           TY ++I G C   +AG++  A  + K M  +    N + ++ L+DG C+  ++  A    
Sbjct: 237 TYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAF 296

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM+++G    PN+VTY S+I      G + EA+ + D+M  LG  PN VT + LI GFC
Sbjct: 297 EEMQRQG--LKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFC 354

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +  + EA +L D +     V +   +++++    +   ++E   L + ML  G+ P+  
Sbjct: 355 KKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVS 414

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I  LC    V     L  ++E   +    D   +++L+ G C+     +A KL  
Sbjct: 415 TYNCLIAGLCRNQNVRAAKKLLNEME--NYELKADVVTYNILIGGWCKDGEPSKAEKLLG 472

Query: 438 FML 440
            ML
Sbjct: 473 EML 475



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 2/221 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K ++  EA  +   + E DL P+ I +N +I  FC+ G M     L   M    ++P++ 
Sbjct: 355 KKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVS 414

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  +I G C    +  A  L   M+ +   A++V Y+ L+ G C+ G   +A +LLGEM
Sbjct: 415 TYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEM 474

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G    PN VTY +++  +C +G +K AL +  +ME  G   N VT + LIKGFC  G
Sbjct: 475 LNVG--VKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTG 532

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
            L++A +L+++++  G   +   Y  + +E++    + + E
Sbjct: 533 KLEDANRLLNEMLEKGLNPNRTTYDVVRLEMLEKGFIPDIE 573



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 84/150 (56%), Gaps = 2/150 (1%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L +M  ++L+ D + YN +I  +C+ G+   A++L+  M  + + P+ +TY +++ G+C
Sbjct: 435 LLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYC 494

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G L+ A  +   M++ G  AN+V Y+ L+ G C+ G +E A  LL EM ++G   +PN
Sbjct: 495 MEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKG--LNPN 552

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
             TY  V      KG + +  G L  + ++
Sbjct: 553 RTTYDVVRLEMLEKGFIPDIEGHLYNISSM 582


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 179/361 (49%), Gaps = 17/361 (4%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
           Y H+S + +  C++   ++   + + +V++   +  V +  +M  I   C++ +LA   M
Sbjct: 287 YTHTSLI-DGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVM--IGGYCKEGKLARAEM 343

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            +L +M E  L P+T  Y  +I   C  G    A ELM  M L    P+I TY ++I GF
Sbjct: 344 -LLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGF 402

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C  G+++ A  + ++    G   + V Y+ L+   C+ G +  AL+L  +M +    C P
Sbjct: 403 CKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENS--CHP 460

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           ++ TYT++I ++C +  M+++  + D+  ++G  P + T +++I G+C  G    A ++ 
Sbjct: 461 DIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVF 520

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           +++V  G +     Y +L+  L +  RL+EA  LF  ML   + P  + C  +  E C  
Sbjct: 521 ERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYCRR 580

Query: 390 GQVLEGFCLYEDIEK----------IGFLSSVDS-DIHSVLLLGLCRKNHSVEAAKLARF 438
            +        + ++K          +  LS+VD+ D  S+ L  +  K+++V+ A    F
Sbjct: 581 DKTTIAVSFLDGLDKRQQAHAADALVRKLSAVDNLDAASLFLKNVLDKHYAVDHATYTSF 640

Query: 439 M 439
           +
Sbjct: 641 I 641



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 138/280 (49%), Gaps = 2/280 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C++ R   EA  +L  M       D+     V+R FC +G       L   M  +
Sbjct: 187 LVLGCCQEGRF-EEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEM 245

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+++ Y + + G C  G ++ A  + + M   G   N+  +++L+DG+C++G  ERA
Sbjct: 246 GNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERA 305

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  ++ K      PNV TYT +I  +C +G +  A  +L RM   G APN  T +TLI
Sbjct: 306 FRLFLKLVKSSS-YKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 364

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G+ D A++L++K+   G + +   Y++++    +  ++++A K+     + G+ 
Sbjct: 365 DGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLC 424

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           PD +  +++I E C  G +     L+  + +      +D+
Sbjct: 425 PDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDT 464



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 31/293 (10%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           DLR    +Y     LF  +G++  A E                  +M+  F    RL +A
Sbjct: 88  DLRHLMRLYATAATLFVARGNLPMAHEAA---------------RAMVAAFAETNRLREA 132

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             +   ++ HG    LV  +A  + + R+G  +R          +G    P+  ++ +++
Sbjct: 133 TDMLLELRSHGLP--LVVETA--NWVLRVGLRQRHHFAHARQAFDGMGVRPDARSFRALV 188

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C +G  +EA  +L  M   G + +  T + +++ FC +G   +   L  ++V  G+ 
Sbjct: 189 LGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNP 248

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y++ V  L +   +K+A  +  +M+  G+KP+    + +I  LC  G     F L
Sbjct: 249 PNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRL 308

Query: 399 YEDIEKIGFLSSVDSDIH--SVLLLGLCRKNHSVEAAKLARF-MLKKRIWLQG 448
           +  + K    SS   ++H  +V++ G C++       KLAR  ML  R+  QG
Sbjct: 309 FLKLVKS---SSYKPNVHTYTVMIGGYCKE------GKLARAEMLLGRMVEQG 352


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 167/344 (48%), Gaps = 6/344 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           + G  +      ++ N LC+  +++  A  VL+ +    L P  +IYN +I  +C+ G++
Sbjct: 329 KNGVTIGDYTCSILLNGLCKDGKVS-IAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL 387

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A      M    + PD ITY ++I G C A R+ +A  L   M+ +G    +  ++ L
Sbjct: 388 EGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 447

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +D   R G +E+   +L EM++ G    PNVV+Y S++  FC  G + EA+ ILD M   
Sbjct: 448 IDAYGRTGQLEKCFIVLSEMQENG--LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK 505

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
              PN    + +I  +   G  D+A+ L++K+ + G   S   Y+ L+  L    ++ EA
Sbjct: 506 DVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEA 565

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           E++ + +    + PD ++ + +I   C  G + +   L + + K G  S+V +  +  L+
Sbjct: 566 EEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRT--YHQLI 623

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464
            GL      +E   L + M++  +       + +VE   K G+E
Sbjct: 624 SGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNE 667



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 142/324 (43%), Gaps = 14/324 (4%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +A    +A+ V  +M E  + P+ I YN +I    + GD+ A   L   M    L P+ I
Sbjct: 208 RAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAI 267

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  ++ G C AGR+ +   L   M       +   YS L DG+ R G  +  L L G+ 
Sbjct: 268 TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKS 327

Query: 261 EKEG---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            K G   GD      T + ++   C  G +  A  +L  +   G  P RV  +TLI G+C
Sbjct: 328 LKNGVTIGD-----YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYC 382

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G L+ A+    ++ +         Y++L+  L + +R+  A+ L  +M  +GV P   
Sbjct: 383 QTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVE 442

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I      GQ+ + F +  ++++ G   +V S  +  ++   C+     EA  +  
Sbjct: 443 TFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS--YGSIVNAFCKNGKIPEAVAILD 500

Query: 438 FMLKKRI----WLQGPYVDKIVEH 457
            M  K +     +    +D  VEH
Sbjct: 501 DMFHKDVLPNAQVYNAIIDAYVEH 524



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 3/276 (1%)

Query: 139 CEKARLANEAMWVLRKMP-EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           C  A    EA+ +LR+M  +    P+   YN VI      G    A E+   M    + P
Sbjct: 170 CVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLP 229

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + ITY +MI G    G LE    L   M  HG   N + Y+ LL G+CR G M     LL
Sbjct: 230 NHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALL 289

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM  +     P+  TY+ +       G  K  L +  +    G      T S L+ G C
Sbjct: 290 DEMASQ--KMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLC 347

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +G +  A +++  +V  G V +   Y++L+    +T  L+ A   F +M +  +KPD +
Sbjct: 348 KDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHI 407

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             + +I  LC   ++     L  +++  G   +V++
Sbjct: 408 TYNALINGLCKAERITNAQDLLMEMQDNGVNPTVET 443



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 5/230 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALE 255
           PD   +   ++    AG L +A G+ + M R G    N  +Y+ ++ G+ R G    A+E
Sbjct: 158 PDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVE 217

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           +  EM +      PN +TY ++I      G ++    + D+M   G  PN +T + L+ G
Sbjct: 218 VFDEMTERA--VLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSG 275

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C  G + E   L+D++ +   V  G  YS L   L R    K    LF K L +GV   
Sbjct: 276 LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIG 335

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
              CS+++  LC  G+V     + + +   G + +    I++ L+ G C+
Sbjct: 336 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT--RVIYNTLINGYCQ 383



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 136/312 (43%), Gaps = 11/312 (3%)

Query: 57  LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDV 116
           ++  C    L   F +  QM  R      ++  +   + + N  C+  RI     +++++
Sbjct: 378 INGYCQTGELEGAFSTFGQMKSRH-----IKPDHITYNALINGLCKAERITNAQDLLMEM 432

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
               ++ G   +V+    + +   +     +   VL +M E  L+P+ + Y +++  FC+
Sbjct: 433 ----QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 488

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
            G +  A  ++  M   D+ P+   Y ++I  +   G  + A  L + MK +G + ++V 
Sbjct: 489 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVT 548

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y+ L+ G+C    +  A E++  +        P+ V+Y ++I   C +G + +AL +  R
Sbjct: 549 YNLLIKGLCNQSQISEAEEIINSLSNH--RLIPDAVSYNTLISACCYRGNIDKALDLQQR 606

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M   G      T   LI G    G L E   L  K++    V S   ++ +V    +   
Sbjct: 607 MHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGN 666

Query: 357 LKEAEKLFSKML 368
             +AE L  +ML
Sbjct: 667 EIKAEDLRKEML 678



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 102/229 (44%), Gaps = 9/229 (3%)

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM---MKEALGILDRMEALGC 302
           RL   + AL LL ++  E     P++ +   +++     G    ++ A GIL    + G 
Sbjct: 100 RLRLPDGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGIL---ASAGA 156

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG-CYSSLVVELVRTKRLKEAE 361
            P+    +  ++     G+L EA  ++ ++   G+       Y+ ++  + R  R  +A 
Sbjct: 157 RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 216

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           ++F +M    V P+ +  + MI     GG +  GF L + +   G     ++  ++VLL 
Sbjct: 217 EVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGL--KPNAITYNVLLS 274

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           GLCR     E + L   M  +++   G     + + L ++GD + + +L
Sbjct: 275 GLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSL 323


>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 643

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 162/327 (49%), Gaps = 14/327 (4%)

Query: 124 GCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC  +V     ++  L +  R+ ++A+ + R M      P T+ YN +IR  C  GD+  
Sbjct: 289 GCTPNVVTFTALVRGLFDDGRV-HDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKG 347

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  ++  M     +P++ TY ++I GF  AG L  A  ++  M R GC  N+V Y+ ++D
Sbjct: 348 ASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVD 407

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
             C+     +A  L+ +M  E  +C PN VT+ ++I+  C    +  ALG+   M   GC
Sbjct: 408 VFCKKLMFNQAKSLIDKMLLE--NCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGC 465

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN  T + LI G   EGN  +A  ++ ++ + G   S   Y+++V  L +T+  +EA  
Sbjct: 466 VPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMV 525

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD----IHSV 418
              KM+  G++P+    S +I   C  G+V     +      +G ++ V+      ++++
Sbjct: 526 FVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWM------LGAMNVVNCHRNILVYTI 579

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRIW 445
           L+  LC ++  V+A      ML + I+
Sbjct: 580 LMAELCNQDKLVDAMTYLLKMLYEGIY 606



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 148/302 (49%), Gaps = 9/302 (2%)

Query: 83  WAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142
           WA    SY   + +    C +  +K   SI+     + ++ GC  +V+    + +   KA
Sbjct: 325 WAPSTVSY---NILIRGLCSVGDLKGASSIL----NSMEQHGCFPNVRTYSTLIDGFSKA 377

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
                A+ +   M     +P+ ++Y N++ +FC+K     A  L+  M L +  P+ +T+
Sbjct: 378 GDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTF 437

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I+  C+  R+  A G+F  M+RHGC  N   Y+ L+ G+ R G+   AL ++ EM+ 
Sbjct: 438 NTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQS 497

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G + S  +VTY +V+   C   M +EA+  + +M   G  PN  T S +I  +C EG +
Sbjct: 498 HGIELS--LVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEV 555

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
             A  ++  +       +   Y+ L+ EL    +L +A     KML  G+ P+ +  +V+
Sbjct: 556 RMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVL 615

Query: 383 IR 384
           +R
Sbjct: 616 VR 617



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 122/268 (45%), Gaps = 7/268 (2%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C    +    + V   M +  + P+   YN ++R  C+   + AA +++  M      PD
Sbjct: 134 CCGENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPD 193

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            +TY +++   C   RL++A  +   M          +Y+A++  +CR   M+    ++ 
Sbjct: 194 DVTYATIVSVLCKLDRLDEATEVLAAMP-----PVAASYNAIVLALCREFRMQEVFSVVS 248

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +M   G    PNV+TYT+++  FC  G ++ A  IL RM   GC PN VT + L++G   
Sbjct: 249 DMVGRG--LQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFD 306

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           +G + +A  +   +VA G   S   Y+ L+  L     LK A  + + M   G  P+   
Sbjct: 307 DGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRT 366

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            S +I      G +     ++ D+ + G
Sbjct: 367 YSTLIDGFSKAGDLGGAISIWNDMSRSG 394



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    V+  LC+  R++ EAM  + KM    ++P+   ++ +I  +C++G++  A  ++ 
Sbjct: 505 VTYNTVVSGLCQ-TRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLG 563

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR-L 247
            M +++ + +I+ Y  ++   CN  +L DA      M   G   N V ++ L+ G+ R L
Sbjct: 564 AMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGVFRNL 623

Query: 248 GSME 251
           G +E
Sbjct: 624 GCIE 627


>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
 gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
 gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
          Length = 642

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 164/344 (47%), Gaps = 26/344 (7%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V+   + EG V  V     + +   +     +A  V  +M    L  +  +Y+ VI  FC
Sbjct: 300 VMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFC 359

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G++  A ++ + M    + P+++ Y +MI G  N G++ +A  LF+ M    CA N++
Sbjct: 360 KSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNII 419

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y +++ G  ++G   RAL +  EM   G  C PN V+Y+ +I   C  G +K+A+ +  
Sbjct: 420 TYGSIIQGYFKIGDTSRALSVWEEM--IGAGCVPNAVSYSILINGLCNVGRLKDAMMVWK 477

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG-CYSSLVVELVRT 354
            M   GCAP+ +  +++IKG CV G +D   +L   ++A G        Y+ L+  L+  
Sbjct: 478 HMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLA 537

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG--FLSSVD 412
           K L  A  L ++ML  G  PD + C++ +RE   G             E+ G  FL    
Sbjct: 538 KDLPRAMDLLNRMLDQGCDPDTVTCNIFLREFGAG-------------ERKGREFLEG-- 582

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456
                 L++ LC +  ++ A ++   ML K I  + P  + +V 
Sbjct: 583 ------LVVRLCDRRRNMAAGEVLMVMLAKYIVPEAPIWEMVVR 620



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 140/283 (49%), Gaps = 7/283 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P T  YN ++      G   AA  +M+ M    + P ++TY +++ G    GR++DA  +
Sbjct: 276 PTTATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKV 335

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M+R+G A N   YS ++ G C+ G ++ AL++   M        PNVV Y+++I   
Sbjct: 336 AEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVAS--PVRPNVVLYSAMIGGL 393

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
              G M EA  +   M    CAPN +T  ++I+G+   G+   A  + ++++  G V + 
Sbjct: 394 ANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGAGCVPNA 453

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             YS L+  L    RLK+A  ++  ML  G  PD +A + MI+ LC+ G V  G  L+ D
Sbjct: 454 VSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYD 513

Query: 402 IEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +   G     D D+  ++VLL GL        A  L   ML +
Sbjct: 514 MLASG---HADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLDQ 553



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 38/283 (13%)

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACG--------------------------------- 220
           DL PD  TY +++    +AGR++DA                                   
Sbjct: 204 DLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVAAEAFNPVLRAMLRAGDVKGAA 263

Query: 221 -LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF  M+  GC      Y+ L+ G+   G    A+ ++  ME+EG    P V+TY +V+ 
Sbjct: 264 KLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRMEREG--VVPGVMTYGAVVD 321

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                G +K+A  + + ME  G A N    ST+I GFC  G +D A ++ + +VA     
Sbjct: 322 GLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRP 381

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   YS+++  L    ++ EAE LF +M+ S   P+ +    +I+     G       ++
Sbjct: 382 NVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVW 441

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           E++   G + +  S  +S+L+ GLC      +A  + + ML +
Sbjct: 442 EEMIGAGCVPNAVS--YSILINGLCNVGRLKDAMMVWKHMLDR 482


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 158/324 (48%), Gaps = 10/324 (3%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V  V +  V+F  C K  L ++   +L +M    ++P+  IY   I   C    M  A
Sbjct: 194 GLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEA 253

Query: 184 D---ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
           +   ELMK  G++   P++ TY +MI G+C  G +  A GL+K +       N+V +  L
Sbjct: 254 EKMFELMKKHGVL---PNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTL 310

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG C+   +  A  L   M K G D  PN+  Y  +I   C  G M EA+G+L  ME+L
Sbjct: 311 VDGFCKARELVTARSLFVHMVKFGVD--PNLYVYNCLIHGHCKSGNMLEAVGLLSEMESL 368

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
             +P+  T + LI G C+E  + EA +L  K+       S   Y+SL+    +   +++A
Sbjct: 369 NLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQA 428

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             L S+M ASGV+P+ +  S +I   C    +     LY ++   G +  V +  ++ L+
Sbjct: 429 LDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVT--YTALI 486

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
               ++ +  EA +L   ML+  I
Sbjct: 487 DAHFKEANMKEALRLYSDMLEAGI 510



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 169/377 (44%), Gaps = 57/377 (15%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I +LC   ++  EA  +   M +  + P+   Y+ +I  +C+ G++  A  L K + + +
Sbjct: 241 ILDLCRDNKM-EEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAE 299

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           L P+++ + +++ GFC A  L  A  LF  M + G   NL  Y+ L+ G C+ G+M  A+
Sbjct: 300 LLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAV 359

Query: 255 ELLGEMEKEGGDCSPNVVTYT-----------------------------------SVIQ 279
            LL EME    + SP+V TYT                                   S+I 
Sbjct: 360 GLLSEME--SLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIH 417

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +C +  M++AL +   M A G  PN +T STLI G+C   ++  A  L  ++   G V 
Sbjct: 418 GYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVP 477

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y++L+    +   +KEA +L+S ML +G+ P+    + ++      G++      Y
Sbjct: 478 DVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFY 537

Query: 400 EDIEK-------IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452
           ++  +       +GF         + L+ GLC+  + + A   +RF    R     P + 
Sbjct: 538 QENNQQRSCWNHVGF---------TCLIEGLCQNGYILRA---SRFFSDMRSCGITPDIC 585

Query: 453 KIVEHLKKSGDEELITN 469
             V  LK    E+ IT+
Sbjct: 586 SYVSMLKGHLQEKRITD 602



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 78/167 (46%), Gaps = 5/167 (2%)

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           ++ +I  F   G+ +EAL +   M+   C+P+     +++ G       D  +     ++
Sbjct: 135 FSLLIMEFLEMGLFEEALWVSREMK---CSPDSKACLSILNGLVRRRRFDSVWVDYQLMI 191

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           + G V     Y  L     +     + EKL  +M + G+KP+    ++ I +LC   ++ 
Sbjct: 192 SRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKME 251

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           E   ++E ++K G L ++ +  +S ++ G C+  +  +A  L + +L
Sbjct: 252 EAEKMFELMKKHGVLPNLYT--YSAMIDGYCKTGNVRQAYGLYKEIL 296


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 162/335 (48%), Gaps = 5/335 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    +I  LC + + A  AM    +M     +P+   YN +I+ FC+ G    A  L+
Sbjct: 154 AVTFSSLINGLCFEDKFA-RAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLL 212

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           K M      PDI+ Y ++I G C    + +A  +F  +K  G   ++  YS L+ G+C  
Sbjct: 213 KKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNS 272

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
              E A  L  EM     +  P+VVT+  ++   C +GM+ EA GI+  M   G  PN  
Sbjct: 273 DQKEEASALFNEMMSL--NIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYA 330

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T ++L+ G+C++  + EA  + D ++  G + +   Y+ L+    + +R+ EA +LF +M
Sbjct: 331 TYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEM 390

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G+ P+    + +I  LC  G+  E   L++D++  G   S D    ++LL  LC+  
Sbjct: 391 SFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQG--CSPDLVTCTILLDSLCKLG 448

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +   A +L R M    +       D ++  + KSG
Sbjct: 449 YLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSG 483



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 122/259 (47%), Gaps = 3/259 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K RL +EA+ +  ++    +RPD   Y+ ++   C       A  L   M  +
Sbjct: 230 IIDGLC-KDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSL 288

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ PD++T+  ++   C  G L +A G+ K+M   G   N   Y++L++G C    +  A
Sbjct: 289 NIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEA 348

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +   M  +G  C PNVV+Y  +I  +C    + EA  + D M   G  PN    +TLI
Sbjct: 349 RMVFDAMITKG--CMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLI 406

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G   EA +L   + A G        + L+  L +   L  A +LF  M  S +K
Sbjct: 407 SGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLK 466

Query: 374 PDGLACSVMIRELCLGGQV 392
           P+ +   ++IR +   G++
Sbjct: 467 PNLVTYDILIRAMYKSGKI 485



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 128/259 (49%), Gaps = 8/259 (3%)

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L K + L+ +  D+  +  +I  F    R++ A  +   + + G   + V +S+L++G+C
Sbjct: 106 LSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLC 165

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
                 RA+E   EM   G    PN+ TY ++I+ FC  G    A+G+L +M+  G  P+
Sbjct: 166 FEDKFARAMEFFDEMVASG--YQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPD 223

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  +T+I G C +  + EA  +  ++   G       YS L+  L  + + +EA  LF+
Sbjct: 224 IVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFN 283

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGL 423
           +M++  + PD +  ++++ +LC  G + E     + I KI     V+ +   ++ L+ G 
Sbjct: 284 EMMSLNIMPDVVTFNILVDKLCKEGMLSEA----QGIIKIMIEKGVEPNYATYNSLMNGY 339

Query: 424 CRKNHSVEAAKLARFMLKK 442
           C +N   EA  +   M+ K
Sbjct: 340 CLQNKVFEARMVFDAMITK 358



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 16/259 (6%)

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG------SMERALELLGEMEKE 263
           C+   +EDA   F  M        +V +  LL  + R+       S+ + +ELL  +E++
Sbjct: 60  CSLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELL-RIERD 118

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
                  V  +  +I  F     +  A  +L ++  LG  P+ VT S+LI G C E    
Sbjct: 119 -------VFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFA 171

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A +  D++VA G   +   Y++++    +  +   A  L  KM  +G +PD +  + +I
Sbjct: 172 RAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTII 231

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
             LC    V E   ++ +I+  G    V +  +S+L+ GLC  +   EA+ L   M+   
Sbjct: 232 DGLCKDRLVSEALDIFSEIKGKGVRPDVFT--YSILMHGLCNSDQKEEASALFNEMMSLN 289

Query: 444 IWLQGPYVDKIVEHLKKSG 462
           I       + +V+ L K G
Sbjct: 290 IMPDVVTFNILVDKLCKEG 308



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 9/208 (4%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMS 104
           NI   + T    +D  C   +L     S++Q  I+  I   ++ +Y   + + N  C  +
Sbjct: 289 NIMPDVVTFNILVDKLCKEGML-----SEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQN 343

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           ++ +       V +A   +GC+ +V    ++ N   KA+  +EA  +  +M    L P+T
Sbjct: 344 KVFEARM----VFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNT 399

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
             YN +I   C+ G    A EL K M      PD++T   ++   C  G L++A  LF+ 
Sbjct: 400 FNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRA 459

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMER 252
           M+      NLV Y  L+  + + G + R
Sbjct: 460 MQDSCLKPNLVTYDILIRAMYKSGKIYR 487


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 198/409 (48%), Gaps = 40/409 (9%)

Query: 77  GIRFFIWAALQS-SYRHSSFMY-----NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVK 130
           G+RFF W + +  S++  SF        RA  ++ + +N    I+     +  GCV   K
Sbjct: 84  GLRFFDWVSNKGFSHKEQSFFLMLEFLGRARNLN-VARNFLFSIE----RRSNGCV---K 135

Query: 131 MMKVIFNLCEK----ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA--- 183
           +    FN   +    A L  E++ + + M +  + P  + +N+++ +  ++G    A   
Sbjct: 136 LQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDL 195

Query: 184 -DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
            DE+ +  G+    PD  T+ ++I GFC    +++A  +FK M+ + C  ++V Y+ ++D
Sbjct: 196 FDEMRRTYGVT---PDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIID 252

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+CR G ++ A  +L  M K+  D  PNVV+YT++++ +C K  + EA+ +   M + G 
Sbjct: 253 GLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGL 312

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-----SVSSGGC-YSSLVVELVRTKR 356
            PN VT +TLIKG       DE    I  ++ GG     + +   C ++ L+        
Sbjct: 313 KPNAVTYNTLIKGLSEAHRYDE----IKDILIGGNDAFTTFAPDACTFNILIKAHCDAGH 368

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD---- 412
           L  A K+F +ML   + PD  + SV+IR LC+  +      L+ ++ +   L   D    
Sbjct: 369 LDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKP 428

Query: 413 -SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
            +  ++ +   LC    + +A K+ R ++K+ +     Y   I  H ++
Sbjct: 429 LAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPPSYKTLITGHCRE 477



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 109/260 (41%), Gaps = 8/260 (3%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG--MGLIDLYPDIITYV 203
           +EA+ V   M    L+P+ + YN +I+   E        +++ G         PD  T+ 
Sbjct: 298 DEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFN 357

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EK 262
            +IK  C+AG L+ A  +F+ M       +  +YS L+  +C     +RA  L  E+ EK
Sbjct: 358 ILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEK 417

Query: 263 E---GGD-CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           E   G D C P    Y  + +  C  G  K+A  +  ++   G   +  +  TLI G C 
Sbjct: 418 EVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRG-VQDPPSYKTLITGHCR 476

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           EG    AY+L+  ++    V     Y  L+  L++      A     +ML S   P    
Sbjct: 477 EGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRSSYLPVATT 536

Query: 379 CSVMIRELCLGGQVLEGFCL 398
              ++ EL       E FCL
Sbjct: 537 FHSVLAELAKRKFANESFCL 556



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 99/246 (40%), Gaps = 6/246 (2%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P    YN +    C  G    A+++ + + +     D  +Y ++I G C  G+ + A  
Sbjct: 427 KPLAAAYNPMFEYLCANGKTKQAEKVFRQL-MKRGVQDPPSYKTLITGHCREGKFKPAYE 485

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L  +M R     +L  Y  L+DG+ ++G    A + L  M +      P   T+ SV+  
Sbjct: 486 LLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLR--SSYLPVATTFHSVLAE 543

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
              +    E+  ++  M       N    + +++        ++A+ ++  +   G +  
Sbjct: 544 LAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQKEKAFLIVRLLYDNGYLVK 603

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
                 L+  L   ++L +A  L    L      D   C+ +I  LC   +  E F LY 
Sbjct: 604 ---MEELLGYLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTVIEGLCKHKRHSEAFSLYN 660

Query: 401 DIEKIG 406
           ++ ++G
Sbjct: 661 ELVELG 666


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 149/299 (49%), Gaps = 4/299 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A  ++ K+  F   P+  +YN +I   C+ GD+  A+ L   M L++L P+ ITY  +
Sbjct: 347 DDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSIL 406

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC +GRL+ A   F  M + G    + AY++L++G C+ G +  A  L  EM  +G 
Sbjct: 407 IDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKG- 465

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P   T+TS+I  +C    +++A  + ++M   G  PN  T + LI G C    + EA
Sbjct: 466 -VEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEA 524

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L D++V      +   Y+ L+    R  ++ +A +L   M   G+ PD      +I  
Sbjct: 525 SELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISG 584

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           LC  G+V +     +D+ K      ++   +S LL G C++   +EA   +  M+++ I
Sbjct: 585 LCSTGRVSKAKDFIDDLHKQNV--KLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGI 641



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 153/308 (49%), Gaps = 7/308 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   R+ +    I D+   +K+   +  +    ++   C++ RL  EA+    +M +  +
Sbjct: 586 CSTGRVSKAKDFIDDL---HKQNVKLNEMCYSALLHGYCQEGRLM-EALSASCEMIQRGI 641

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
             D + +  +I    ++ D     +L+K M    L PD + Y SMI  +   G  + A  
Sbjct: 642 NMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFE 701

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            + +M    C  N+V Y+AL++G+C+ G M+RA  L   M+    +  PN +TY   +  
Sbjct: 702 CWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQ--AANVPPNSITYGCFLDN 759

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
              +G MKEA+G+   M   G   N VT + +I+GFC  G   EA +++ ++   G    
Sbjct: 760 LTKEGNMKEAIGLHHAMLK-GLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPD 818

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              YS+L+ E  R+  +  + KL+  ML  G++PD +A +++I   C+ G++ + F L +
Sbjct: 819 CVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRD 878

Query: 401 DIEKIGFL 408
           D+ + G +
Sbjct: 879 DMLRRGII 886



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 149/322 (46%), Gaps = 10/322 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LC+   L ++A  +   M   +LRP+ I Y+ +I  FC  G +  A      M   
Sbjct: 371 LINSLCKGGDL-DKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQD 429

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +   +  Y S+I G C  G L  A  LF  M   G       +++L+ G C+   +++A
Sbjct: 430 GIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKA 489

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  +M   G   +PNV T+T++I   C    M EA  + D +      P  VT + LI
Sbjct: 490 FKLYNKMIDNG--ITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLI 547

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           +G+C +G +D+A++L++ +   G V     Y  L+  L  T R+ +A+     +    VK
Sbjct: 548 EGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVK 607

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            + +  S ++   C  G+++E   L    E I    ++D   H+VL+ G  +     +  
Sbjct: 608 LNEMCYSALLHGYCQEGRLMEA--LSASCEMIQRGINMDLVCHAVLIDGALK-----QPD 660

Query: 434 KLARFMLKKRIWLQGPYVDKIV 455
           +   F L K +  QG   D ++
Sbjct: 661 RKTFFDLLKDMHDQGLRPDNVI 682



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 3/225 (1%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L+ M +  LRPD +IY ++I  + ++G    A E    M   + +P+++TY +++ G C
Sbjct: 667 LLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLC 726

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
            AG ++ A  LFK M+      N + Y   LD + + G+M+ A+ L   M K       N
Sbjct: 727 KAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLK---GLLAN 783

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
            VT+  +I+ FC  G   EA  +L  M   G  P+ VT STLI  +C  GN+  + +L D
Sbjct: 784 TVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWD 843

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            ++  G       Y+ L+        L +A +L   ML  G+ PD
Sbjct: 844 TMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 146/312 (46%), Gaps = 6/312 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   ++A EA  +  ++ E  ++P  + YN +I  +C  G +  A EL++ M   
Sbjct: 511 LISGLCSTNKMA-EASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQK 569

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD  TY  +I G C+ GR+  A      + +     N + YSALL G C+ G +  A
Sbjct: 570 GLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEA 629

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L    EM + G   + ++V +  +I     +   K    +L  M   G  P+ V  +++I
Sbjct: 630 LSASCEMIQRG--INMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMI 687

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             +  EG+  +A++  D +V      +   Y++L+  L +   +  A  LF +M A+ V 
Sbjct: 688 DTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVP 747

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +     +  L   G + E   L+  + K G L++  +  H++++ G C+     EA 
Sbjct: 748 PNSITYGCFLDNLTKEGNMKEAIGLHHAMLK-GLLANTVT--HNIIIRGFCKLGRFHEAT 804

Query: 434 KLARFMLKKRIW 445
           K+   M +  I+
Sbjct: 805 KVLSEMTENGIF 816



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 157/363 (43%), Gaps = 42/363 (11%)

Query: 129 VKMMKVIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           +K  +V +N+     C   ++ ++A  +L  M +  L PDT  Y  +I   C  G +  A
Sbjct: 536 IKPTEVTYNVLIEGYCRDGKI-DKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKA 594

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            + +  +   ++  + + Y +++ G+C  GRL +A      M + G   +LV ++ L+DG
Sbjct: 595 KDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDG 654

Query: 244 ICRLGSMERALELLGEMEKEG---------------------------------GDCSPN 270
             +    +   +LL +M  +G                                  +C PN
Sbjct: 655 ALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPN 714

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           VVTYT+++   C  G M  A  +  RM+A    PN +T    +     EGN+ EA  L  
Sbjct: 715 VVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGL-H 773

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
             +  G +++   ++ ++    +  R  EA K+ S+M  +G+ PD +  S +I E C  G
Sbjct: 774 HAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSG 833

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
            V     L++ +   G     D   +++L+ G C      +A +L   ML++ I     Y
Sbjct: 834 NVGASVKLWDTMLNRGL--EPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPDNKY 891

Query: 451 VDK 453
           + K
Sbjct: 892 LQK 894



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 138/320 (43%), Gaps = 39/320 (12%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +RPD    + V+R  CE  D + A E ++ M        I+TY  +I G C   R+ +A 
Sbjct: 221 VRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAV 280

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            + + +   G AA++V Y  L+ G CRL   E  ++L+ EM + G   SP     + ++ 
Sbjct: 281 EVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELG--FSPTEAAVSGLVD 338

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL----------- 328
               +G + +A  ++ ++   G  PN    + LI   C  G+LD+A  L           
Sbjct: 339 GLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRP 398

Query: 329 ------------------------IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
                                    D+++  G   +   Y+SL+    +   L  AE LF
Sbjct: 399 NGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLF 458

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            +M   GV+P     + +I   C   QV + F LY  +   G   +V +   + L+ GLC
Sbjct: 459 IEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYT--FTALISGLC 516

Query: 425 RKNHSVEAAKLARFMLKKRI 444
             N   EA++L   +++++I
Sbjct: 517 STNKMAEASELFDELVERKI 536



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/428 (21%), Positives = 193/428 (45%), Gaps = 33/428 (7%)

Query: 25  HFTTASPAE----RFYTHL-----QKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQ 75
           HF+ + P E    RF + L      K    +    A++ + L    V +VL       ++
Sbjct: 26  HFSASKPDEENDCRFVSLLCDIVRGKQSWKVAFNDASISSTLRPHHVEQVLMNTL-DDAK 84

Query: 76  MGIRFFIWAALQSSYRHSSFMYN---RACEMSRI--------------KQNPSIIID-VV 117
           + +RFF +  L  +  HS+  Y     A   SR+              + +P  +    +
Sbjct: 85  LALRFFNFLGLHKNMNHSTTSYAIMVHALVHSRLFWPANSLLHTLLLRESHPKCVFSHFL 144

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           ++YK      ++    ++ N    +R+  +A+ +++ M   +L P+    + ++    + 
Sbjct: 145 DSYKRCKFSSTLGFNLLVQNYVLSSRIF-DAVVIVKLMFANNLLPEVRTLSALLNGLLKV 203

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
              I   EL        + PD  T  ++++  C       A    + M+ +G   ++V Y
Sbjct: 204 RKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTY 263

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+ G+C+   +  A+E+   +  +G   + +VVTY +++  FC     +  + ++D M
Sbjct: 264 NVLIHGLCKGDRVSEAVEVKRSLGGKG--LAADVVTYCTLVLGFCRLQQFEAGIQLMDEM 321

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
             LG +P    +S L+ G   +G +D+AY+L+ KV   G V +   Y++L+  L +   L
Sbjct: 322 VELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDL 381

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
            +AE L+S M    ++P+G+  S++I   C  G++      ++ + + G   +V +  ++
Sbjct: 382 DKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYA--YN 439

Query: 418 VLLLGLCR 425
            L+ G C+
Sbjct: 440 SLINGQCK 447


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 178/356 (50%), Gaps = 36/356 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  ++  E   VLR+M +  + PD +IY  +I  FC+ G+  AA +L   M   
Sbjct: 186 IILLLCKSGKVV-EGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAR 244

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ PD I + ++I G   +G++ +A  LF  M + G   + V Y+AL+DG C+LG M++A
Sbjct: 245 EIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKA 304

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  +M + G   +PNVVTYT++    C  G +  A  +L  M   G   N  T +T++
Sbjct: 305 FFLHNQMVQIG--LTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIV 362

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  GN+ +A +L++++   G       Y++L+    +T  + +A +L  +ML  G++
Sbjct: 363 NGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQ 422

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV---------------------- 411
           P  +  +V++  LC+ G++ +G  L + + + G + +                       
Sbjct: 423 PTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEI 482

Query: 412 -----------DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456
                      DS+ +++L+ G C+  +  EA  L + M++KR  L     + +++
Sbjct: 483 YRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIK 538



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 173/349 (49%), Gaps = 7/349 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++  YK+ G    V    V F +  +A L NEA     K+  + +       N  +    
Sbjct: 28  LIYTYKDWGSDPHV--FDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLS 85

Query: 176 EKGDMIA-ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            K DM+    ++      + +  +  +Y  ++      G++ +A  L   M+  GC  ++
Sbjct: 86  SKRDMLGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDV 145

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V+Y+ ++DG C +G +++ ++L+ EM+ +G    PN+ TY+S+I + C  G + E   +L
Sbjct: 146 VSYTTIIDGYCHVGELQKVVQLVKEMQLKG--LKPNLYTYSSIILLLCKSGKVVEGEKVL 203

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             M   G  P+ V  +TLI GFC  GN   AY+L  ++ A   V     +S+L+  L  +
Sbjct: 204 REMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGS 263

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            ++ EA+KLF++M+  G +PD +  + +I   C  G++ + F L+  + +IG   +V + 
Sbjct: 264 GKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVT- 322

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            ++ L  GLC+      A +L   M +K + L     + IV  L K+G+
Sbjct: 323 -YTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGN 370



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 155/289 (53%), Gaps = 4/289 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M +    PD + Y  +I  +C+ G+M  A  L   M  I L P+++TY ++ 
Sbjct: 268 EADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALA 327

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C +G L+ A  L   M R G   N+  Y+ +++G+C+ G++ +A++L+ EM++ G  
Sbjct: 328 DGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAG-- 385

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+ +TYT+++  +   G M +A  +L  M   G  P  VT + L+ G C+ G L++  
Sbjct: 386 LHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGE 445

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+  ++  G + +   Y+S++ +      ++ + +++  M A GV PD    +++I+  
Sbjct: 446 RLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGH 505

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           C    + E + L++++ +  F  ++ +  ++ L+ G  ++   +EA +L
Sbjct: 506 CKARNMKEAWFLHKEMVEKRF--NLTASSYNALIKGFFKRKKLLEARQL 552



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 177/381 (46%), Gaps = 39/381 (10%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           +++ V   + + G   + +   ++ N   +     EA  +L +M      PD + Y  +I
Sbjct: 93  MVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTII 152

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
             +C  G++    +L+K M L  L P++ TY S+I   C +G++ +   + + M + G  
Sbjct: 153 DGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVF 212

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEME------------------------------ 261
            + V Y+ L+DG C+LG+ + A +L  EME                              
Sbjct: 213 PDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKL 272

Query: 262 -----KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
                K+G +  P+ VTYT++I  +C  G MK+A  + ++M  +G  PN VT + L  G 
Sbjct: 273 FNEMIKKGFE--PDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGL 330

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G LD A +L+ ++   G   +   Y+++V  L +   + +A KL  +M  +G+ PD 
Sbjct: 331 CKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDT 390

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + ++      G++++   L  ++   G   +V +   +VL+ GLC      +  +L 
Sbjct: 391 ITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVT--FNVLMNGLCMSGKLEDGERLL 448

Query: 437 RFMLKKRIWLQGPYVDKIVEH 457
           ++ML+K I       + I++ 
Sbjct: 449 KWMLEKGIMPNAATYNSIMKQ 469



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 4/227 (1%)

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +G  +++     I N LC+   +  +A+ ++ +M E  L PDTI Y  ++  + + G+M+
Sbjct: 349 KGLQLNISTYNTIVNGLCKAGNIL-QAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMV 407

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A EL++ M    L P ++T+  ++ G C +G+LED   L K M   G   N   Y++++
Sbjct: 408 KARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIM 467

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
              C   +M  + E+   M  +G    P+  TY  +I+  C    MKEA  +   M    
Sbjct: 468 KQYCIRNNMRISTEIYRGMCAQG--VVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKR 525

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
                 + + LIKGF     L EA QL +++   G V+S   Y+  V
Sbjct: 526 FNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFV 572



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 37/174 (21%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           + G   +V    V+ N LC   +L  +   +L+ M E  + P+   YN++++ +C + +M
Sbjct: 418 DRGLQPTVVTFNVLMNGLCMSGKL-EDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNM 476

Query: 181 IAADELMKGMGLIDLYPDIITYV-----------------------------------SM 205
             + E+ +GM    + PD  TY                                    ++
Sbjct: 477 RISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNAL 536

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           IKGF    +L +A  LF+ M+R G  A+   Y+  +D     G+ME  LEL  E
Sbjct: 537 IKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDE 590



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/203 (19%), Positives = 89/203 (43%), Gaps = 7/203 (3%)

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE- 324
           D   +   +    Q+    G++ EA    D++   G A +  + +  +   C+    D  
Sbjct: 34  DWGSDPHVFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLT--CLSSKRDML 91

Query: 325 --AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
               ++  +    G   +   Y+ L+  L R  +++EA  L  +M   G  PD ++ + +
Sbjct: 92  GMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTI 151

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           I   C  G++ +   L ++++  G   ++ +  +S ++L LC+    VE  K+ R M+K+
Sbjct: 152 IDGYCHVGELQKVVQLVKEMQLKGLKPNLYT--YSSIILLLCKSGKVVEGEKVLREMMKR 209

Query: 443 RIWLQGPYVDKIVEHLKKSGDEE 465
            ++        +++   K G+ +
Sbjct: 210 GVFPDHVIYTTLIDGFCKLGNTQ 232


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 167/346 (48%), Gaps = 6/346 (1%)

Query: 120 YKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
           Y + G  +      ++ N LC+  +++  A  VL+ +    L P  +IYN +I  +C+ G
Sbjct: 331 YLKNGVTIGDYTCSILLNGLCKDGKVS-IAEEVLQSLVNAGLVPTRVIYNTLINGYCQTG 389

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
           ++  A      M    + PD ITY ++I G C A R+ +A  L   M+ +G    +  ++
Sbjct: 390 ELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFN 449

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            L+D   R G +E+   +L EM++ G    PNVV+Y S++  FC  G + EA+ ILD M 
Sbjct: 450 TLIDAYGRTGQLEKCFIVLSEMQENG--LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMF 507

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
                PN    + +I  +   G  D+A+ L++K+ + G   S   Y+ L+  L    ++ 
Sbjct: 508 HKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQIS 567

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
           EAE++ + +    + PD ++ + +I   C  G + +   L + + K G  S+V +  +  
Sbjct: 568 EAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRT--YHQ 625

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464
           L+ GL       E   L + M++  +       + +VE   K G+E
Sbjct: 626 LISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNE 671



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 142/324 (43%), Gaps = 14/324 (4%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +A    +A+ V  +M E  + P+ I YN +I    + GD+ A   L   M    L P+ I
Sbjct: 212 RAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAI 271

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  ++ G C AGR+ +   L   M       +   YS L DG+ R G  +  L L G+ 
Sbjct: 272 TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKY 331

Query: 261 EKEG---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            K G   GD      T + ++   C  G +  A  +L  +   G  P RV  +TLI G+C
Sbjct: 332 LKNGVTIGD-----YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYC 386

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G L+ A+    ++ +         Y++L+  L + +R+  A+ L  +M  +GV P   
Sbjct: 387 QTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVE 446

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I      GQ+ + F +  ++++ G   +V S  +  ++   C+     EA  +  
Sbjct: 447 TFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS--YGSIVNAFCKNGKIPEAVAILD 504

Query: 438 FMLKKRI----WLQGPYVDKIVEH 457
            M  K +     +    +D  VEH
Sbjct: 505 DMFHKDVLPNAQVYNAIIDAYVEH 528



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 3/276 (1%)

Query: 139 CEKARLANEAMWVLRKMP-EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           C  A    EA+ +LR+M  +    P+   YN VI      G    A E+   M    + P
Sbjct: 174 CVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLP 233

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + ITY +MI G    G LE    L   M  HG   N + Y+ LL G+CR G M     LL
Sbjct: 234 NHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALL 293

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM  +     P+  TY+ +       G  K  L +  +    G      T S L+ G C
Sbjct: 294 DEMASQ--KMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLC 351

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +G +  A +++  +V  G V +   Y++L+    +T  L+ A   F +M +  +KPD +
Sbjct: 352 KDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHI 411

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             + +I  LC   ++     L  +++  G   +V++
Sbjct: 412 TYNALINGLCKAERITNAQDLLMEMQDNGVNPTVET 447



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 116/276 (42%), Gaps = 5/276 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDIITYVSMIKGFCNAGRLEDAC 219
           RPDT  +N  ++     GD+  A  +++ MG      P+  +Y  +I G   AGR  DA 
Sbjct: 161 RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 220

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +F  M       N + Y+ ++DG  + G +E    L  +M   G    PN +TY  ++ 
Sbjct: 221 EVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHG--LKPNAITYNVLLS 278

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G M E   +LD M +    P+  T S L  G    G+      L  K +  G   
Sbjct: 279 GLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTI 338

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
                S L+  L +  ++  AE++   ++ +G+ P  +  + +I   C  G++   F  +
Sbjct: 339 GDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTF 398

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             ++        D   ++ L+ GLC+      A  L
Sbjct: 399 GQMKSRHI--KPDHITYNALINGLCKAERITNAQDL 432



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 137/312 (43%), Gaps = 11/312 (3%)

Query: 57  LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDV 116
           ++  C    L   F +  QM  R      ++  +   + + N  C+  RI     +++++
Sbjct: 382 INGYCQTGELEGAFSTFGQMKSRH-----IKPDHITYNALINGLCKAERITNAQDLLMEM 436

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
               ++ G   +V+    + +   +     +   VL +M E  L+P+ + Y +++  FC+
Sbjct: 437 ----QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 492

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
            G +  A  ++  M   D+ P+   Y ++I  +   G  + A  L + MK +G + ++V 
Sbjct: 493 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVT 552

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y+ L+ G+C    +  A E++  +        P+ V+Y ++I   C +G + +AL +  R
Sbjct: 553 YNLLIKGLCNQSQISEAEEIINSLSNH--RLIPDAVSYNTLISACCYRGNIDKALDLQQR 610

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M   G      T   LI G    G L+E   L  K++    V S   ++ +V    +   
Sbjct: 611 MHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGN 670

Query: 357 LKEAEKLFSKML 368
             +AE L  +ML
Sbjct: 671 EIKAEDLRKEML 682



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 102/229 (44%), Gaps = 9/229 (3%)

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM---MKEALGILDRMEALGC 302
           RL   + AL LL ++  E     P++ +   +++     G    ++ A GIL    + G 
Sbjct: 104 RLRLPDGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGIL---ASAGA 160

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG-CYSSLVVELVRTKRLKEAE 361
            P+    +  ++     G+L EA  ++ ++   G+       Y+ ++  + R  R  +A 
Sbjct: 161 RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 220

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           ++F +M    V P+ +  + MI     GG +  GF L + +   G     ++  ++VLL 
Sbjct: 221 EVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGL--KPNAITYNVLLS 278

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           GLCR     E + L   M  +++   G     + + L ++GD + + +L
Sbjct: 279 GLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSL 327


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 148/298 (49%), Gaps = 6/298 (2%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           D+V      GC  +V    ++ N   KA L  EA  VL +M    L  +++IYN +I   
Sbjct: 411 DLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICAL 470

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C K  +  A  L+  M      PD+ TY S+I G C   R+++A  LF  M   G  AN 
Sbjct: 471 CRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANN 530

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V Y+ L+  + R G+ ++AL L+ +M   G  C+ + +TY  +I+ FC  G +++ L + 
Sbjct: 531 VTYNTLIHALLRRGAFQKALTLVNDMLFRG--CTLDKITYNGLIKAFCKVGNIEKGLELY 588

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           ++M   G   + ++ + +I G C  G +D A++ +   +  G V     Y+S++  L + 
Sbjct: 589 EQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKV 648

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC--LYEDIEKIGFLSS 410
            R+KEA  LF ++   GV+PD    +  I   C  G V +  C   Y  IE  GF+ S
Sbjct: 649 GRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDA-CSFFYRGIEN-GFVPS 704



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 156/341 (45%), Gaps = 11/341 (3%)

Query: 95  FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           F+ +  C + ++ +   I+I +        C  +  +  +I       +L     ++   
Sbjct: 328 FLLHGLCRIGKLNEARKILIKI-------PCPNNAILNTLINGYVMSGQLKEAQSFLNET 380

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M  F  +PD   YN ++   C++G +  A +L+  M      P++ITY  ++ G C AG 
Sbjct: 381 MINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGL 440

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           LE+A  +   M   G   N V Y+ L+  +CR   +  AL LL EM  +G  C P++ TY
Sbjct: 441 LEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKG--CKPDLFTY 498

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            S+I   C    + EA  +   M   G   N VT +TLI      G   +A  L++ ++ 
Sbjct: 499 NSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLF 558

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G       Y+ L+    +   +++  +L+ +M+  G+  D ++C++MI  LC  G+V  
Sbjct: 559 RGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDN 618

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            F    D    GF+  + +  ++ +L GLC+     EA  L
Sbjct: 619 AFEFLRDAINRGFVPDIVT--YNSVLNGLCKVGRIKEALNL 657



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 164/344 (47%), Gaps = 7/344 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           + GCV +  + + + +   +    +EA+ +L +M      PD   +N+VI   C+   + 
Sbjct: 246 KHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIH 305

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L+  M L   YPD +TY  ++ G C  G+L +A    K++ +  C  N +  + L+
Sbjct: 306 DATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEA---RKILIKIPCPNNAIL-NTLI 361

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G    G ++ A   L E     G   P++ TY  ++   C +G +  A  +++ M   G
Sbjct: 362 NGYVMSGQLKEAQSFLNETMINFG-FQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRG 420

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C PN +T + L+ G C  G L+EA  ++ ++ A G   +   Y+ L+  L R +++  A 
Sbjct: 421 CEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVAL 480

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
            L S+M   G KPD    + +I  LC   ++ E F L+ ++   G  +  ++  ++ L+ 
Sbjct: 481 NLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG--AVANNVTYNTLIH 538

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            L R+    +A  L   ML +   L     + +++   K G+ E
Sbjct: 539 ALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIE 582



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 129/263 (49%), Gaps = 6/263 (2%)

Query: 93  SSFMYN-RACEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMW 150
           +S +YN   C + R K+   + ++++     +GC   +     +I+ LC+  R+ +EA  
Sbjct: 459 NSVIYNCLICALCR-KEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRI-DEAFR 516

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +   M       + + YN +I     +G    A  L+  M       D ITY  +IK FC
Sbjct: 517 LFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFC 576

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G +E    L++ M   G  A+ ++ + +++G+C++G ++ A E L +    G    P+
Sbjct: 577 KVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRG--FVPD 634

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           +VTY SV+   C  G +KEAL + DR++  G  P+  T +T I   C EG +++A     
Sbjct: 635 IVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFY 694

Query: 331 KVVAGGSVSSGGCYSSLVVELVR 353
           + +  G V S   ++ LV  L++
Sbjct: 695 RGIENGFVPSNLTWNVLVYTLLK 717



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 161/353 (45%), Gaps = 18/353 (5%)

Query: 87  QSSYRHSSFMY----NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142
           Q  Y H+  +Y    N+   + + K    +I  ++   KEEG V    +  +I     KA
Sbjct: 105 QKGYCHTFDVYYVFINKLGAIGKFK----LIDKLLMQMKEEGIVFRESIFMIIMKHYGKA 160

Query: 143 RLANEAMWVLRKMPEFDL-RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
               +A+ +L  M    L  P    Y+ V+ +         A  +   M    + P + T
Sbjct: 161 GQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFT 220

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           +  ++K  C    ++ AC L + M +HGC  N + Y  L+  + +   +  AL+LL EM 
Sbjct: 221 FGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMF 280

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G  C P+V T+  VI   C    + +A  ++DRM   G  P+ +T   L+ G C  G 
Sbjct: 281 VMG--CMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGK 338

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK-MLASGVKPDGLACS 380
           L+EA +++ K+       +    ++L+   V + +LKEA+   ++ M+  G +PD    +
Sbjct: 339 LNEARKILIKI----PCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYN 394

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           +++  LC  G +     L  ++ + G   +V +  +++L+ GLC+     EA 
Sbjct: 395 ILMHGLCKEGSLSFARDLVNEMSRRGCEPNVIT--YAILVNGLCKAGLLEEAG 445



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 89/170 (52%), Gaps = 2/170 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D I YN +I+ FC+ G++    EL + M +  L  D I+   MI G C  G++++A    
Sbjct: 564 DKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFL 623

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           +     G   ++V Y+++L+G+C++G ++ AL L   ++ EG    P+  TY + I   C
Sbjct: 624 RDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEG--VRPDAFTYNTFISWQC 681

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
            +GM+ +A     R    G  P+ +T + L+     + N +  + ++D++
Sbjct: 682 KEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFFVLDEL 731



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 96/234 (41%), Gaps = 3/234 (1%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y   I      G+ +    L   MK  G       +  ++    + G   +A+ LL +M 
Sbjct: 115 YYVFINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDM- 173

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           +    C P   +Y  V++I       + A  +   M + G +P   T   ++K  C+   
Sbjct: 174 RAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNE 233

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +D A  L+  +   G V +   Y +L+  L +  ++ EA KL  +M   G  PD    + 
Sbjct: 234 VDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFND 293

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +I  LC   ++ +   L + +   GF    D+  +  LL GLCR     EA K+
Sbjct: 294 VIHGLCKVNKIHDATKLVDRMLLRGFYP--DNMTYGFLLHGLCRIGKLNEARKI 345



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 13/189 (6%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSI--------IIDVVEAYKE---EGCVVSVKMM 132
            A Q +    + M  R C + +I  N  I        I   +E Y++   +G        
Sbjct: 544 GAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISC 603

Query: 133 KVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
            ++ N LC+  ++ N A   LR        PD + YN+V+   C+ G +  A  L   + 
Sbjct: 604 NIMINGLCKVGKVDN-AFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQ 662

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           +  + PD  TY + I   C  G + DAC  F     +G   + + ++ L+  + +  + E
Sbjct: 663 VEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQE 722

Query: 252 RALELLGEM 260
               +L E+
Sbjct: 723 NNFFVLDEL 731


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 160/308 (51%), Gaps = 4/308 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V M   I +   K +  N+A  +  +M    + P+ + Y+ +I  F   G +  A +L 
Sbjct: 196 NVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLF 255

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M L ++ PD+ T+  ++ GFC  G++++   +F +M + G   N+V Y +L+DG C +
Sbjct: 256 NKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLV 315

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             + +A  +L  M + G   +P++ +Y  +I  FC    + EA+ +   M      P+ V
Sbjct: 316 KEVNKAKSILYTMSQRG--VNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVV 373

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T ++LI G C  G +  A +L+D++   G       YSS++  L +  ++ +A  L +K+
Sbjct: 374 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKL 433

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G++P+    +++I  LC GG++ +   ++ED+   G+  +V++  ++V++ G C K 
Sbjct: 434 KDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNT--YTVMIHGFCNKG 491

Query: 428 HSVEAAKL 435
              EA  L
Sbjct: 492 LFDEALAL 499



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 129/249 (51%), Gaps = 3/249 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C+  ++  E   V   M +  ++P+ + Y +++  +C   ++  A  ++  M    + P
Sbjct: 277 FCKDGKMK-EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNP 335

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI +Y  +I GFC   ++++A  LFK M       ++V Y++L+DG+C+LG +  AL+L+
Sbjct: 336 DIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLV 395

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM   G    P+++TY+S++   C    + +A+ +L +++  G  PN  T + LI G C
Sbjct: 396 DEMHDRG--VPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLC 453

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G L++A+ + + ++  G   +   Y+ ++          EA  L SKM  +   PD +
Sbjct: 454 KGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAV 513

Query: 378 ACSVMIREL 386
              ++IR L
Sbjct: 514 TYEIIIRSL 522



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 187/422 (44%), Gaps = 50/422 (11%)

Query: 53  VKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI-KQNPS 111
           V  K  S   ++  H  F   S   I F  ++++ +++ +++ + +     SR+ +QNP+
Sbjct: 14  VPKKFHSFQFLKNTHFNFIPYSSSKINFIPYSSISTTFHNNNDVVDAFSLFSRLLRQNPT 73

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA--NEAMWVLRKMPEF-DLRPDTIIYN 168
                +E  K  G +V  K    + +L ++      N  ++  +   +     P+TI + 
Sbjct: 74  P--PAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHPHQLMGYHPNTITFT 131

Query: 169 NVIRLFCEKG-------------------DMIAADELMKGM-------GLIDLY------ 196
            +I+  C KG                   D +    L+ G+         +DL       
Sbjct: 132 TLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGN 191

Query: 197 ---PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+++ Y ++I G C    + DA  L+  M   G + N+V YSAL+ G   +G ++ A
Sbjct: 192 LVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDA 251

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++L  +M  E  +  P+V T+  ++  FC  G MKE   +   M   G  PN VT  +L+
Sbjct: 252 IDLFNKMILE--NIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLM 309

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C+   +++A  ++  +   G       Y+ L+    + K++ EA  LF +M    + 
Sbjct: 310 DGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHII 369

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVE 431
           PD +  + +I  LC  G++     L +++   G    V  DI  +S +L  LC KNH V+
Sbjct: 370 PDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG----VPPDIITYSSILDALC-KNHQVD 424

Query: 432 AA 433
            A
Sbjct: 425 KA 426



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 3/228 (1%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
            N+A  +L  M +  + PD   YN +I  FC+   +  A  L K M    + PD++TY S
Sbjct: 318 VNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNS 377

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C  G++  A  L   M   G   +++ YS++LD +C+   +++A+ LL +++ +G
Sbjct: 378 LIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQG 437

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PN+ TYT +I   C  G +++A  I + +   G      T + +I GFC +G  DE
Sbjct: 438 --IRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDE 495

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           A  L+ K+     +     Y  ++  L       +AEKL  +M+  G+
Sbjct: 496 ALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKL-REMITRGL 542



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 105/195 (53%), Gaps = 2/195 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K +  +EAM + ++M    + PD + YN++I   C+ G +  A +L+  M    + PDII
Sbjct: 349 KIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDII 408

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY S++   C   +++ A  L   +K  G   N+  Y+ L+DG+C+ G +E A  +  ++
Sbjct: 409 TYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDL 468

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G + + N  TYT +I  FC KG+  EAL +L +M+   C P+ VT   +I+    + 
Sbjct: 469 LVKGYNITVN--TYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKD 526

Query: 321 NLDEAYQLIDKVVAG 335
             D+A +L + +  G
Sbjct: 527 ENDKAEKLREMITRG 541



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 115/284 (40%), Gaps = 62/284 (21%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + I Y S+   F N   + DA  LF  + R       + ++ +L  + +       L L 
Sbjct: 40  NFIPYSSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLS 99

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +ME EG   +P +  +    Q+                   +G  PN +T +TLIKG C
Sbjct: 100 QQMEFEG--INPVLFHFQHPHQL-------------------MGYHPNTITFTTLIKGLC 138

Query: 318 VEGNLDEAYQLIDKVVA---------GGSVSSGGC------------------------- 343
           ++G + +A    D VVA          G++  G C                         
Sbjct: 139 LKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVV 198

Query: 344 -YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            YS+++  + + K + +A  L+S+M++ G+ P+ +  S +I      GQ+ +   L+  +
Sbjct: 199 MYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKM 258

Query: 403 EKIGFLSSVDSDIHS--VLLLGLCRKNHSVEAAKLARFMLKKRI 444
                L ++  D+++  +L+ G C+     E   +   M+K+ I
Sbjct: 259 ----ILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGI 298


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 158/307 (51%), Gaps = 12/307 (3%)

Query: 148 AMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           A+ +LRKM E   + P+ +IYN +I    + G    A  L   M   +++PDI+TY  MI
Sbjct: 236 ALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMI 295

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC +GR  DA  L + M       ++V +SAL++   + G    A EL  EM      
Sbjct: 296 NGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRS-- 353

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+ VTY+S+I  FC +  +  A  +       GC+P+ +T +TLI G+C    +D+  
Sbjct: 354 IIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGI 413

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+ ++   G V++   Y++L+    +   L  A+ L  +M++SGV P+ + C+ ++  L
Sbjct: 414 KLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGL 473

Query: 387 CLGGQVLEGFCLYE-------DIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLAR 437
           C  G++ +   +++       DI+     + V+ D+  +++L+ GL  +   +EA +L  
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYE 533

Query: 438 FMLKKRI 444
            M  + I
Sbjct: 534 EMPHRGI 540



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 150/303 (49%), Gaps = 16/303 (5%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R + +A  +L++M E  + PD + ++ +I  F ++G    A+EL   M   
Sbjct: 294 MINGFCISGRWS-DAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPR 352

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P  +TY SMI GFC   RL+ A  +F +    GC+ +++ ++ L+ G CR   ++  
Sbjct: 353 SIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDG 412

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++LL EM + G     N +TYT++I  FC  G +  A  +L  M + G  PN VT +TL+
Sbjct: 413 IKLLHEMTEAG--LVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLL 470

Query: 314 KGFCVEGNLDEAYQLI-----DKVVAGGSVSSGG------CYSSLVVELVRTKRLKEAEK 362
            G C  G L +A ++       K+    S    G       Y+ L+  L+   +  EAE+
Sbjct: 471 DGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEE 530

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           L+ +M   G+ PD +  S MI  LC   ++ E   +++ +    F  S D    + L+ G
Sbjct: 531 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSF--SPDVVTFNTLITG 588

Query: 423 LCR 425
            C+
Sbjct: 589 YCK 591



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 147/298 (49%), Gaps = 16/298 (5%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M    + P T+ Y+++I  FC++  + AA+ +          PDIIT+ ++I
Sbjct: 341 EAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLI 400

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C A R++D   L   M   G  AN + Y+ L+ G C++G +  A +LL EM   G  
Sbjct: 401 AGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSG-- 458

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----------GCAPNRVTISTLIKG 315
             PNVVT  +++   C  G +K+AL +   M+             G  P+  T + LI G
Sbjct: 459 VCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICG 518

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
              EG   EA +L +++   G V     YSS++  L +  RL EA ++F  M +    PD
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPD 578

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            +  + +I   C  G V +G  L+ ++ + G ++  D+  +  L+ G  RK  +++ A
Sbjct: 579 VVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVA--DAITYITLIYGF-RKVDNIDGA 633



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 142/274 (51%), Gaps = 13/274 (4%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +A+  ++ + +L +M E  L  +TI Y  +I  FC+ GD+ AA +L++ M    + P+++
Sbjct: 405 RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVV 464

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCAANLVAYSALLDGICRLGS 249
           T  +++ G C+ G+L+DA  +FK M++           +G   ++  Y+ L+ G+   G 
Sbjct: 465 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGK 524

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
              A EL  EM   G    P+ +TY+S+I   C +  + EA  + D M +   +P+ VT 
Sbjct: 525 FLEAEELYEEMPHRG--IVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTF 582

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           +TLI G+C  G +D+  +L  ++   G V+    Y +L+    +   +  A  +F +M++
Sbjct: 583 NTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMIS 642

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           SGV PD +    M+  L    ++     + ED++
Sbjct: 643 SGVYPDTITIRNMLTGLWSKEELERAVAMLEDLQ 676



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 150/317 (47%), Gaps = 10/317 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC + R++ EA+ +  +M     +P+ + +  ++   C +G ++ A  L+ 
Sbjct: 152 VTFNTLLHGLCVEDRIS-EALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLD 206

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRL 247
            M    L P+ ITY +++ G C  G    A  L + M+       N+V Y+ ++DG+ + 
Sbjct: 207 RMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKD 266

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    A  L  EM+++  +  P++VTY  +I  FC  G   +A  +L  M      P+ V
Sbjct: 267 GRHSDAHNLFIEMQEK--EIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVV 324

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S LI  F  EG   EA +L D+++    + S   YSS++    +  RL  AE +F   
Sbjct: 325 TFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLT 384

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  PD +  + +I   C   +V +G  L  ++ + G +++  +  ++ L+ G C+  
Sbjct: 385 PTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTIT--YTTLIHGFCQVG 442

Query: 428 HSVEAAKLARFMLKKRI 444
               A  L + M+   +
Sbjct: 443 DLNAAQDLLQEMISSGV 459



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 136/283 (48%), Gaps = 10/283 (3%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           +KM    +  +   +  +++ FC    +  A      +  +  +P ++T+ +++ G C  
Sbjct: 105 KKMEMLRMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVE 164

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            R+ +A  LF  M    C  N+V ++ L++G+CR G +  A+ LL  M ++G    PN +
Sbjct: 165 DRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDG--LQPNQI 218

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           TY +++   C  G    AL +L +ME +    PN V  +T+I G   +G   +A+ L  +
Sbjct: 219 TYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIE 278

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +           Y+ ++     + R  +AE+L  +ML   + PD +  S +I      G+
Sbjct: 279 MQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGK 338

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
             E   LY+++     + S  +  +S ++ G C++N  ++AA+
Sbjct: 339 FFEAEELYDEMLPRSIIPSTVT--YSSMIDGFCKQNR-LDAAE 378



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 129/262 (49%), Gaps = 13/262 (4%)

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L K M ++ +  +  ++  ++K FC+  +L  A   F  + + G    +V ++ LL G+C
Sbjct: 103 LHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLC 162

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
               +  AL+L  +M      C PNVVT+T+++   C +G + EA+ +LDRM   G  PN
Sbjct: 163 VEDRISEALDLFHQM------CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPN 216

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKV-VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           ++T  T++ G C  G+   A  L+ K+      + +   Y++++  L +  R  +A  LF
Sbjct: 217 QITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLF 276

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLG 422
            +M    + PD +  + MI   C+ G+  +   L +++ +      ++ D+   S L+  
Sbjct: 277 IEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLE----RKINPDVVTFSALINA 332

Query: 423 LCRKNHSVEAAKLARFMLKKRI 444
             ++    EA +L   ML + I
Sbjct: 333 FVKEGKFFEAEELYDEMLPRSI 354



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 112/238 (47%), Gaps = 7/238 (2%)

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF     L+DA  LF  M R     +++ +  L+  + R+G  +  + L  +ME     C
Sbjct: 55  GFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPC 114

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             N  ++T +++ FC    +  AL    ++  LG  P  VT +TL+ G CVE  + EA  
Sbjct: 115 --NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALD 172

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  ++     V+    +++L+  L R  R+ EA  L  +ML  G++P+ +    ++  +C
Sbjct: 173 LFHQMCKPNVVT----FTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMC 228

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
             G  +    L   +E++  +   +  I++ ++ GL +     +A  L   M +K I+
Sbjct: 229 KMGDTVSALNLLRKMEEVSHIIP-NVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIF 285



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++    +I  LC+++RL +EA  +   M      PD + +N +I  +C+ G +    EL 
Sbjct: 544 TITYSSMIDGLCKQSRL-DEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELF 602

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             MG   +  D ITY+++I GF     ++ A  +F+ M   G   + +    +L G+   
Sbjct: 603 CEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSK 662

Query: 248 GSMERALELLGEMEKEGG 265
             +ERA+ +L +++   G
Sbjct: 663 EELERAVAMLEDLQMSVG 680


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 142/288 (49%), Gaps = 8/288 (2%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMP 156
           N+ C+  R K        V +  +E G   + V    +I  LC + + ANEA  V+ +M 
Sbjct: 276 NQLCKDGRTKD----AFKVFDEMRERGVSCNIVTYNTLIGGLCREMK-ANEANKVMDQMK 330

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
            + + P+ I YN +I  FC  G +  A  L + +    L P ++TY  ++ GFC  G   
Sbjct: 331 SYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTS 390

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            A  + K M+  G   + V Y+ L+D   R  +ME A++L   ME+ G    P+V TY+ 
Sbjct: 391 GAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELG--LVPDVHTYSV 448

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I  FC KG M EA  +   M      PN V  +T+I G+C EG+   A +L   +    
Sbjct: 449 LIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKE 508

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
              +   YS L+  L + ++LKEAE L  KM+ SG+ P    C+++ R
Sbjct: 509 LAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLISR 556



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 156/317 (49%), Gaps = 4/317 (1%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V+ V    ++   C +A    ++  +L ++ EF   P+ +IY  +I   C+KG++  A +
Sbjct: 160 VLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKD 219

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L   MG   L  +  TY  +I G    G  +    +++ M+ HG   NL  Y+ +++ +C
Sbjct: 220 LFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLC 279

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G  + A ++  EM + G  C  N+VTY ++I   C +    EA  ++D+M++    PN
Sbjct: 280 KDGRTKDAFKVFDEMRERGVSC--NIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPN 337

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            +T +TLI GFC  G L +A  L   + + G   S   Y+ LV    R      A K+  
Sbjct: 338 LITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVK 397

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +M   G+KP  +  +++I        +     L   +E++G +  V +  +SVL+ G C 
Sbjct: 398 EMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHT--YSVLIHGFCI 455

Query: 426 KNHSVEAAKLARFMLKK 442
           K    EA++L + M++K
Sbjct: 456 KGQMNEASRLFKSMVEK 472



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 143/304 (47%), Gaps = 4/304 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K  +  +   +  KM E  + P+   YN V+   C+ G    A ++   M    +  +I+
Sbjct: 245 KNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIV 304

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY ++I G C   +  +A  +   MK +    NL+ Y+ L+DG C +G + +AL L  ++
Sbjct: 305 TYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDL 364

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           +  G   SP++VTY  ++  FC KG    A  ++  ME  G  P++VT + LI  F    
Sbjct: 365 KSRG--LSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           N++ A QL   +   G V     YS L+       ++ EA +LF  M+   ++P+ +  +
Sbjct: 423 NMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYN 482

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            MI   C  G       L+ D+E+     +V S  +S L+  LC++    EA  L   M+
Sbjct: 483 TMILGYCKEGSSYRALRLFRDMEEKELAPNVAS--YSYLIRVLCKERKLKEAEDLVEKMI 540

Query: 441 KKRI 444
              I
Sbjct: 541 DSGI 544


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 139/264 (52%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 143 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLIN 202

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+   M  +    
Sbjct: 203 GLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQS--L 260

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C  G +K+A  ++D M   G  P++ T +TLI G C EG+LD A++
Sbjct: 261 LPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFK 320

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  +  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 321 HRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFC 380

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G   SV
Sbjct: 381 KKGDVWKGSKLLKEMQRNGHAPSV 404



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+++++ ++A  +  +M    L P+ + +  +I   C+ G +  A E+ K M   
Sbjct: 200 LINGLCKESKM-DDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQ 258

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ITY ++I G C  G L+ A  L   M   G   +   Y+ L+DG C+ G ++ A
Sbjct: 259 SLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 318

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +    M +E  +   + V YT++I   C +G   +A  +L  M ++G  P+  T + +I
Sbjct: 319 FKHRKRMIQE--NIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMII 376

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             FC +G++ +  +L+ ++   G   S   Y+ L+
Sbjct: 377 NEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLM 411



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 113/240 (47%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    R  +L+
Sbjct: 53  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKL----RYFKLV 108

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 109 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNG 168

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   ++A G       YS L+  L +  ++ +A +LF +ML  G+ P+
Sbjct: 169 YIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPN 228

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+     +A  L
Sbjct: 229 GVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLP--DLITYNTLIYGLCKNGDLKQAHDL 286



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            V    +I  LC++ + + +A  +LR+M    L+PD   Y  +I  FC+KGD+    +L+
Sbjct: 334 DVAYTALISGLCQEGQ-SVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLL 392

Query: 188 KGMGLIDLYPDIITYVSMIKG 208
           K M      P ++TY  ++ G
Sbjct: 393 KEMQRNGHAPSVVTYNVLMNG 413


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 208/454 (45%), Gaps = 39/454 (8%)

Query: 9   ILSSSVNIKNSKIFALHFTTASPAERFYT---HLQKNPNNIE--------------KTLA 51
             SSS N  +SK  +LHF T   A   +    H+   P+ ++               T+ 
Sbjct: 19  FFSSSQNNFHSK--SLHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVL 76

Query: 52  TVKAKLDSTCV------IEVLHRCFPSQSQMGIRFFIWAAL-----QSSYRHSSFMYNRA 100
           ++  ++DS  V      + +L   F   +++G  F + A +     Q      + +    
Sbjct: 77  SLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGL 136

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   +I +     + + +   +EG   +V     + N   K    + A+ +LR M + + 
Sbjct: 137 CVEGKIGE----ALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNC 192

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD +IY ++I   C+   +  A  L   M    + PDI TY S++   CN    +    
Sbjct: 193 QPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTT 252

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M       ++V +S ++D +C+ G +  A E++  M + G    P+VVTYT+++  
Sbjct: 253 LLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRG--VEPDVVTYTTLMDG 310

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +  M EA+ + D M   G AP+ ++ +TLI G+C    +D+A  L +++     +  
Sbjct: 311 HCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPD 370

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+  L    RL++A  LF +M+A G  PD +  S+++  LC    + E   L +
Sbjct: 371 TKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLK 430

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
            IE      + D  ++++++ G+CR    +EAA+
Sbjct: 431 AIEASNL--NPDIQVYNIIIDGMCRAGE-LEAAR 461



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 160/327 (48%), Gaps = 4/327 (1%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N S  I ++ + ++  C   V +   I +   K R   EA  +  +M    + PD   Y 
Sbjct: 176 NTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYT 235

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           +++   C   +      L+  M    + PD++ + +++   C  G++ +A  +  +M + 
Sbjct: 236 SLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQR 295

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   ++V Y+ L+DG C    M+ A+++   M ++G   +P+V++YT++I  +C    + 
Sbjct: 296 GVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG--FAPDVISYTTLINGYCKIHKID 353

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A+ + + M      P+  T +TL+ G C  G L +A  L  ++VA G +     YS L+
Sbjct: 354 KAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILL 413

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L +   L+EA  L   + AS + PD    +++I  +C  G++     L+ ++   G  
Sbjct: 414 DSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLH 473

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            SV +  +++++ GLC++    EA KL
Sbjct: 474 PSVWT--YNIMIHGLCKRGLLNEANKL 498



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 146/320 (45%), Gaps = 41/320 (12%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
             ++  + NLCE   +      +L +M    + PD +I++ V+   C++G +  A E++ 
Sbjct: 235 TSLVHALCNLCEWKHVTT----LLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVD 290

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD++TY +++ G C    +++A  +F +M R G A ++++Y+ L++G C++ 
Sbjct: 291 MMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIH 350

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +++A+ L  EM ++  +  P+  TY +++   C  G +++A+ +   M A G  P+ VT
Sbjct: 351 KIDKAMYLFEEMCRK--EWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVT 408

Query: 309 ISTL-----------------------------------IKGFCVEGNLDEAYQLIDKVV 333
            S L                                   I G C  G L+ A  L   + 
Sbjct: 409 YSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLS 468

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           + G   S   Y+ ++  L +   L EA KLF +M  +   PDG   + + R      + L
Sbjct: 469 SKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETL 528

Query: 394 EGFCLYEDIEKIGFLSSVDS 413
               L E++   GF + V +
Sbjct: 529 RAIQLLEEMLARGFSADVST 548



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 3/215 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++AM++  +M   +  PDT  YN ++   C  G +  A  L   M      PD++TY  +
Sbjct: 353 DKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSIL 412

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +   C    LE+A  L K ++      ++  Y+ ++DG+CR G +E A +L   +  +G 
Sbjct: 413 LDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG- 471

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+V TY  +I   C +G++ EA  +   M+   C+P+  T +T+ +GF        A
Sbjct: 472 -LHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRA 530

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
            QL+++++A G  S+    ++L+VE++    L ++
Sbjct: 531 IQLLEEMLARG-FSADVSTTTLLVEMLSDDGLDQS 564



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 116/253 (45%), Gaps = 14/253 (5%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P I+ +  ++              L   M   G   N+   + L++  C L  +  A  +
Sbjct: 54  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 113

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L ++ K G    P+  T+T++I+  C +G + EAL + D+M   G  PN VT  TLI G 
Sbjct: 114 LAKILKLGH--QPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGL 171

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  GN   A +L+  +  G        Y+S++  L + +++ EA  LFS+M+  G+ PD 
Sbjct: 172 CKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDI 231

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKI--GFLSS---VDSDIHSVLLLGLCRKNHSVE 431
              + ++  LC         C ++ +  +    ++S    D  I S ++  LC++    E
Sbjct: 232 FTYTSLVHALC-------NLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTE 284

Query: 432 AAKLARFMLKKRI 444
           A ++   M+++ +
Sbjct: 285 AHEIVDMMIQRGV 297



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           +LC+   L  EAM +L+ +   +L PD  +YN +I   C  G++ AA +L   +    L+
Sbjct: 415 SLCKNCHL-EEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLH 473

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P + TY  MI G C  G L +A  LF  M  + C+ +   Y+ +  G  +     RA++L
Sbjct: 474 PSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQL 533

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           L EM   G   S +V T T ++++    G+
Sbjct: 534 LEEMLARG--FSADVSTTTLLVEMLSDDGL 561


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 152/300 (50%), Gaps = 4/300 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++ +   E+GC + V     I N LC+K  LA +A  +  +M E  + PD   +  +I 
Sbjct: 380 LEIRDKMLEQGCALDVVAYNTILNGLCKKKLLA-DANALFDEMVERGVVPDFCTFTTLIH 438

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C++G+M  A  L   M   ++ PDI+TY  +I GFC    +E A  L+  M       
Sbjct: 439 GHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFP 498

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N ++Y+ L++G C LG +  A  L  EM ++G    P +VT  +VI+ +C  G + +A  
Sbjct: 499 NHISYAILVNGYCNLGFVSEAFRLWDEMIRKG--IKPTLVTCNTVIKGYCRSGDLSKADE 556

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
            L +M + G  P+ +T +TLI GF     +D+A+ LI+K+   G       Y+ ++    
Sbjct: 557 FLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFC 616

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           R  R++EAE +  KM+  G+ PD    + +I        + E F  ++++ + GF+   D
Sbjct: 617 RQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPDDD 676



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 4/322 (1%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K  G V    +  ++ N   +  + +EA+ +  KM E     D + YN ++   C+K  +
Sbjct: 352 KTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLL 411

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A+ L   M    + PD  T+ ++I G C  G +  A  LF +M +     ++V Y+ L
Sbjct: 412 ADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNIL 471

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG C+   ME+A EL  EM        PN ++Y  ++  +C  G + EA  + D M   
Sbjct: 472 IDGFCKTTEMEKANELWNEMISR--KIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRK 529

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P  VT +T+IKG+C  G+L +A + + K+++ G       Y++L+   V+ + + +A
Sbjct: 530 GIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKA 589

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             L +KM   G++PD +  +V++   C  G++ E   +   + + G     D   ++ L+
Sbjct: 590 FFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGI--DPDRSTYTTLI 647

Query: 421 LGLCRKNHSVEAAKLARFMLKK 442
            G   +++  EA +    ML++
Sbjct: 648 NGYVSQDNLKEAFRFHDEMLQR 669



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 160/333 (48%), Gaps = 11/333 (3%)

Query: 118 EAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           E Y E    G  ++V  + ++ N   K    ++    L  M +  +  D + YN +I  +
Sbjct: 171 EVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAY 230

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C +G +  A E+M  M    L P + TY ++I G C  GR   A G+F  M   G + + 
Sbjct: 231 CREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDT 290

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             Y+ LL   CR  +   A ++  +M   G   SP++++++S+I +    G + +AL   
Sbjct: 291 TTYNTLLVESCRNNNFLEAKDIFSDMLHRG--VSPDLISFSSLIGVSSRNGHLDQALMYF 348

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             M+  G  P+ V  + LI G+C  G + EA ++ DK++  G       Y++++  L + 
Sbjct: 349 RDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKK 408

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
           K L +A  LF +M+  GV PD    + +I   C  G + +   L+  + +     ++  D
Sbjct: 409 KLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQ----KNIKPD 464

Query: 415 I--HSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           I  +++L+ G C+     +A +L   M+ ++I+
Sbjct: 465 IVTYNILIDGFCKTTEMEKANELWNEMISRKIF 497



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 132/278 (47%), Gaps = 35/278 (12%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D + +  +I+ +  A +L +    FK+++R G   ++ A ++LL G+ ++G ++ A E+ 
Sbjct: 114 DNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVY 173

Query: 258 GEMEKEG---------------------GDCSP------------NVVTYTSVIQIFCGK 284
            E+ + G                      D  P            ++VTY ++I  +C +
Sbjct: 174 NEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCRE 233

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G++ EA  +++ M   G  P   T + +I G C +G    A  + +++++ G       Y
Sbjct: 234 GLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTY 293

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++L+VE  R     EA+ +FS ML  GV PD ++ S +I      G + +    + D++ 
Sbjct: 294 NTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKT 353

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            G +   D+ I+++L+ G CR     EA ++   ML++
Sbjct: 354 SGLVP--DNVIYTILINGYCRNGMMSEALEIRDKMLEQ 389


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 171/333 (51%), Gaps = 13/333 (3%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA----DELMKGM 190
           I  LC++ R+  EA  VL K+ E  L P+ + YN +I   C KGD+  A    DE+M   
Sbjct: 294 ISRLCKERRIE-EASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMM-NR 351

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
           G++     + TY  +I       R+E+A  + K M+  G   ++V Y+  ++G CR G+ 
Sbjct: 352 GIV---ASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNA 408

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           ++AL L  EM ++  +  P V TYTS+I +F  +  M EA     +    G  P+ +  +
Sbjct: 409 KKALSLFDEMVEK--NIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFN 466

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            LI G CV GN+D A+QL+ ++     V     +++L+    R ++++EA+KL  +M   
Sbjct: 467 ALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKER 526

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G+KPD ++ + +I      G + +   +++++  +GF  ++ +  ++ L+ G  +   + 
Sbjct: 527 GIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLT--YNALIQGYSKIGEAD 584

Query: 431 EAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            A +L R M  K I         ++E +K + D
Sbjct: 585 HAEELLREMQSKGITPDDSTYLYVIEAMKTNDD 617



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 154/351 (43%), Gaps = 39/351 (11%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A +V  +M + +++   + +N +I + C +G    A + +  M +  + P+++TY ++I 
Sbjct: 201 AWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVIN 260

Query: 208 GFCNAGRLEDACGLFKVMK-----------------------------------RHGCAA 232
           G+C  G+ E A  +FK MK                                     G   
Sbjct: 261 GYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVP 320

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N V Y+AL+DG C  G +++A     EM   G   S  V TY  +I     +  ++EA  
Sbjct: 321 NAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVAS--VFTYNLLIHALFLEKRIEEAED 378

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           ++  M   G  P+ VT +  I G+C  GN  +A  L D++V      +   Y+SL+    
Sbjct: 379 MIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFG 438

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  R+ EAE+ F K +  G+ PD +  + +I   C+ G +   F L ++++    +   D
Sbjct: 439 KRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVP--D 496

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
               + L+ G CR+    EA KL   M ++ I       + ++    K GD
Sbjct: 497 EVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGD 547



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 147/286 (51%), Gaps = 6/286 (2%)

Query: 114 IDVVEAYKEE----GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           +D   AY++E    G V SV    ++ +     +   EA  ++++M E  + PD + YN 
Sbjct: 338 LDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNI 397

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
            I  +C  G+   A  L   M   ++ P + TY S+I  F    R+ +A   FK   + G
Sbjct: 398 QINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEG 457

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              +++ ++AL+DG C  G+++RA +LL EM  +     P+ VT+ +++Q +C +  ++E
Sbjct: 458 MLPDIIMFNALIDGHCVNGNIDRAFQLLKEM--DNAKVVPDEVTFNTLMQGYCRERKVEE 515

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  +LD M+  G  P+ ++ +TLI G+   G++ +A ++ D++++ G   +   Y++L+ 
Sbjct: 516 AKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQ 575

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
              +      AE+L  +M + G+ PD      +I  +     ++E 
Sbjct: 576 GYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDDLVEN 621



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 162/323 (50%), Gaps = 4/323 (1%)

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           P++I + +   +    V +  +  ++ +   + R  +EA+  L  M E ++ P T   N+
Sbjct: 128 PTVIFNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNS 187

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           ++ L  +   +  A  + + M  +++   I+T+  MI   C  G+ + A      M+ +G
Sbjct: 188 LLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYG 247

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              N+V Y+ +++G C  G  E A ++   M+ +  +  P+  TY S I   C +  ++E
Sbjct: 248 VKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDK--NLKPDCYTYNSFISRLCKERRIEE 305

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A G+L ++   G  PN VT + LI G C +G+LD+A+   D+++  G V+S   Y+ L+ 
Sbjct: 306 ASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIH 365

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L   KR++EAE +  +M   GV+PD +  ++ I   C  G   +   L++++ +     
Sbjct: 366 ALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRP 425

Query: 410 SVDSDIHSVLLLGLCRKNHSVEA 432
           +V++    + + G  ++N   EA
Sbjct: 426 TVETYTSLIDVFG--KRNRMSEA 446


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 167/346 (48%), Gaps = 6/346 (1%)

Query: 120 YKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
           Y + G  +      ++ N LC+  +++  A  VL+ +    L P  +IYN +I  +C+ G
Sbjct: 194 YLKNGVTIGDYTCSILLNGLCKDGKVS-IAEEVLQSLVNAGLVPTRVIYNTLINGYCQTG 252

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
           ++  A      M    + PD ITY ++I G C A R+ +A  L   M+ +G    +  ++
Sbjct: 253 ELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFN 312

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            L+D   R G +E+   +L EM++ G    PNVV+Y S++  FC  G + EA+ ILD M 
Sbjct: 313 TLIDAYGRTGQLEKCFIVLSEMQENG--LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMF 370

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
                PN    + +I  +   G  D+A+ L++K+ + G   S   Y+ L+  L    ++ 
Sbjct: 371 HKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQIS 430

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
           EAE++ + +    + PD ++ + +I   C  G + +   L + + K G  S+V +  +  
Sbjct: 431 EAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRT--YHQ 488

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464
           L+ GL       E   L + M++  +       + +VE   K G+E
Sbjct: 489 LISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNE 534



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 142/324 (43%), Gaps = 14/324 (4%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +A    +A+ V  +M E  + P+ I YN +I    + GD+ A   L   M    L P+ I
Sbjct: 75  RAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAI 134

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  ++ G C AGR+ +   L   M       +   YS L DG+ R G  +  L L G+ 
Sbjct: 135 TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKY 194

Query: 261 EKEG---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            K G   GD      T + ++   C  G +  A  +L  +   G  P RV  +TLI G+C
Sbjct: 195 LKNGVTIGD-----YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYC 249

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G L+ A+    ++ +         Y++L+  L + +R+  A+ L  +M  +GV P   
Sbjct: 250 QTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVE 309

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I      GQ+ + F +  ++++ G   +V S  +  ++   C+     EA  +  
Sbjct: 310 TFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS--YGSIVNAFCKNGKIPEAVAILD 367

Query: 438 FMLKKRI----WLQGPYVDKIVEH 457
            M  K +     +    +D  VEH
Sbjct: 368 DMFHKDVLPNAQVYNAIIDAYVEH 391



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 121/276 (43%), Gaps = 3/276 (1%)

Query: 139 CEKARLANEAMWVLRKMP-EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           C  A    EA+ +LR+M  +    P+   YN VI      G    A E+   M    + P
Sbjct: 37  CVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLP 96

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + ITY +MI G    G LE    L   M  HG   N + Y+ LL G+CR G M     LL
Sbjct: 97  NHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALL 156

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM  +     P+  TY+ +       G  K  L +  +    G      T S L+ G C
Sbjct: 157 DEMASQ--KMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLC 214

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +G +  A +++  +V  G V +   Y++L+    +T  L+ A   F +M +  +KPD +
Sbjct: 215 KDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHI 274

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             + +I  LC   ++     L  +++  G   +V++
Sbjct: 275 TYNALINGLCKAERITNAQDLLMEMQDNGVNPTVET 310



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 137/312 (43%), Gaps = 11/312 (3%)

Query: 57  LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDV 116
           ++  C    L   F +  QM  R      ++  +   + + N  C+  RI     +++++
Sbjct: 245 INGYCQTGELEGAFSTFGQMKSRH-----IKPDHITYNALINGLCKAERITNAQDLLMEM 299

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
               ++ G   +V+    + +   +     +   VL +M E  L+P+ + Y +++  FC+
Sbjct: 300 ----QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 355

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
            G +  A  ++  M   D+ P+   Y ++I  +   G  + A  L + MK +G + ++V 
Sbjct: 356 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVT 415

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y+ L+ G+C    +  A E++  +        P+ V+Y ++I   C +G + +AL +  R
Sbjct: 416 YNLLIKGLCNQSQISEAEEIINSLSNH--RLIPDAVSYNTLISACCYRGNIDKALDLQQR 473

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M   G      T   LI G    G L+E   L  K++    V S   ++ +V    +   
Sbjct: 474 MHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGN 533

Query: 357 LKEAEKLFSKML 368
             +AE L  +ML
Sbjct: 534 EIKAEDLRKEML 545



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 116/276 (42%), Gaps = 5/276 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDIITYVSMIKGFCNAGRLEDAC 219
           RPDT  +N  ++     GD+  A  +++ MG      P+  +Y  +I G   AGR  DA 
Sbjct: 24  RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 83

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +F  M       N + Y+ ++DG  + G +E    L  +M   G    PN +TY  ++ 
Sbjct: 84  EVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHG--LKPNAITYNVLLS 141

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G M E   +LD M +    P+  T S L  G    G+      L  K +  G   
Sbjct: 142 GLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTI 201

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
                S L+  L +  ++  AE++   ++ +G+ P  +  + +I   C  G++   F  +
Sbjct: 202 GDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTF 261

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             ++        D   ++ L+ GLC+      A  L
Sbjct: 262 GQMKSRHI--KPDHITYNALINGLCKAERITNAQDL 295



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 84/185 (45%), Gaps = 6/185 (3%)

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG-CYS 345
           ++ A GIL    + G  P+    +  ++     G+L EA  ++ ++   G+       Y+
Sbjct: 11  VRRAFGIL---ASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYN 67

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
            ++  + R  R  +A ++F +M    V P+ +  + MI     GG +  GF L + +   
Sbjct: 68  VVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCH 127

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           G     ++  ++VLL GLCR     E + L   M  +++   G     + + L ++GD +
Sbjct: 128 GL--KPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSK 185

Query: 466 LITNL 470
            + +L
Sbjct: 186 AMLSL 190


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 157/314 (50%), Gaps = 12/314 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   CE      +A+ +L  M   ++  +  +YN ++   C+ G    A +L+  M   
Sbjct: 10  IVRGYCEDGE-TRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATT 68

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS---- 249
              PDI TY  +I   C  GRLEDA GL ++M+   C  ++V Y+ L+ G+CR G+    
Sbjct: 69  SCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFR 128

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           +ERA  L  EM  +G   +P  VTYT VI       M ++A  +LD M   GCA + VT 
Sbjct: 129 VERAFRLFEEMVDKGH--TPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTY 186

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           + LI  F   G +D+A  L  ++   G +     Y+S+V    +  +++EA KLF++M A
Sbjct: 187 NMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKA 246

Query: 370 SGVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
            G+ P+G   +  I + CL  G++ +      ++ K G    VD+  +  L+  +C+   
Sbjct: 247 RGIFPNGRTYTS-ITDACLKAGRMQDAHAYLVEMRKEGL---VDAISYVALISTICKLGK 302

Query: 429 SVEAAKLARFMLKK 442
                +L R ML+K
Sbjct: 303 GKLGFQLLREMLEK 316



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 155/312 (49%), Gaps = 13/312 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFD 159
           CE    +Q  +++    E  K      + K+  +I  +LC+  +   EA+ +L  M    
Sbjct: 15  CEDGETRQALALL----EHMKNAEVPANAKLYNIILTHLCKHGK-EKEALDLLHSMATTS 69

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG----RL 215
             PD   YN +I   C+ G +  A  L++ M   D   DI+TY ++I G C  G    R+
Sbjct: 70  CAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRV 129

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           E A  LF+ M   G     V Y+ ++D + R+   E+A ++L  M + G  C+ ++VTY 
Sbjct: 130 ERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENG--CAFDLVTYN 187

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I  F   GMM +A+ +   M   GC P+ VT ++++ GFC  G ++EA +L  ++ A 
Sbjct: 188 MLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKAR 247

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +G  Y+S+    ++  R+++A     +M   G+  D ++   +I  +C  G+   G
Sbjct: 248 GIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGL-VDAISYVALISTICKLGKGKLG 306

Query: 396 FCLYEDIEKIGF 407
           F L  ++ + GF
Sbjct: 307 FQLLREMLEKGF 318



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 135/269 (50%), Gaps = 8/269 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +  TY ++++G+C  G    A  L + MK     AN   Y+ +L  +C+ G  + AL+LL
Sbjct: 3   NAFTYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLL 62

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M      C+P++ TY  +I   C  G +++A G+++ M+A  C  + VT +TLI G C
Sbjct: 63  HSMATTS--CAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLC 120

Query: 318 VEGN----LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            +GN    ++ A++L +++V  G   +   Y+ ++  L+R K  ++A+K+   M  +G  
Sbjct: 121 RKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCA 180

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            D +  +++I      G + +   L+ ++   G +  V +  ++ ++ G C+     EA 
Sbjct: 181 FDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVT--YNSVVDGFCKAGKVEEAN 238

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           KL   M  + I+  G     I +   K+G
Sbjct: 239 KLFAEMKARGIFPNGRTYTSITDACLKAG 267



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 3/192 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+ +   + ++  +A  VL  M E     D + YN +I  F + G M  A +L   M   
Sbjct: 153 VVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTR 212

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD++TY S++ GFC AG++E+A  LF  MK  G   N   Y+++ D   + G M+ A
Sbjct: 213 GCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDA 272

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
              L EM KEG     + ++Y ++I   C  G  K    +L  M   G  PN VT + + 
Sbjct: 273 HAYLVEMRKEG---LVDAISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVF 329

Query: 314 KGFCVEGNLDEA 325
           +    E N D+A
Sbjct: 330 EALSKESNTDDA 341



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 87/164 (53%), Gaps = 3/164 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++   E GC   +    ++ N   KA + ++AM +  +MP     PD + YN+V+  FC
Sbjct: 170 VLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFC 229

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A++L   M    ++P+  TY S+      AGR++DA      M++ G   + +
Sbjct: 230 KAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGL-VDAI 288

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           +Y AL+  IC+LG  +   +LL EM ++G    PN+VT+  V +
Sbjct: 289 SYVALISTICKLGKGKLGFQLLREMLEKG--FKPNLVTFNVVFE 330


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 164/329 (49%), Gaps = 9/329 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI +LC +A LA+ A+  L  M     RPD   +N++I  +C    +  A +L   M L 
Sbjct: 17  VIRSLCRRADLAS-ALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLR 75

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               D+++Y ++I+GFC  GR+++A  LF  M +     ++  Y+AL+ G+C+ G  E  
Sbjct: 76  GFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ----PDMHMYAALVKGLCKAGRGEEG 131

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L +L  M++ G    P+   Y +V+   C +   KEA  +L  M   G AP  VT + +I
Sbjct: 132 LLMLRRMKELGW--RPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVI 189

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             +C EG + +A ++++ +   G   +   Y++LV       ++ +A  L +KM   GV 
Sbjct: 190 NAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVN 249

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  +++IR  C+ G +   F L   +E  G ++  D   ++ L+  LC+   + +A 
Sbjct: 250 PDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIA--DQYTYNALINALCKDGRTDQAC 307

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            L   +  + I       + ++  L KSG
Sbjct: 308 SLFDSLETRGIKPNAVTFNSLINGLCKSG 336



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 133/266 (50%), Gaps = 2/266 (0%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           KE G   S +    + +     R A EA  +L++M E  L P  +    VI  +C++G M
Sbjct: 139 KELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRM 198

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  +++ M L    P++ TY ++++GFCN G++  A  L   M+  G   + V Y+ L
Sbjct: 199 SDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLL 258

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G C  G +E A  LL  ME +G     +  TY ++I   C  G   +A  + D +E  
Sbjct: 259 IRGQCIDGHIESAFRLLRLMEGDG--LIADQYTYNALINALCKDGRTDQACSLFDSLETR 316

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN VT ++LI G C  G +D A++ ++K+V+ G       YSS +  L + K  +E 
Sbjct: 317 GIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEG 376

Query: 361 EKLFSKMLASGVKPDGLACSVMIREL 386
                +ML   VKP  +  +++I +L
Sbjct: 377 LSFIGEMLQKDVKPSTVNYTIVIHKL 402



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 155/326 (47%), Gaps = 43/326 (13%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           KMP      D + Y  +I  FCE G +   DE ++  G +D  PD+  Y +++KG C AG
Sbjct: 71  KMPLRGFAQDVVSYAALIEGFCETGRI---DEAVELFGEMD-QPDMHMYAALVKGLCKAG 126

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLD------------------------------- 242
           R E+   + + MK  G   +  AY+A++D                               
Sbjct: 127 RGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCT 186

Query: 243 ----GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
                 C+ G M  AL +L  M+  G  C PNV TY +++Q FC +G + +A+ +L++M 
Sbjct: 187 AVINAYCKEGRMSDALRVLELMKLRG--CKPNVWTYNALVQGFCNEGKVHKAMALLNKMR 244

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             G  P+ VT + LI+G C++G+++ A++L+  +   G ++    Y++L+  L +  R  
Sbjct: 245 VCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTD 304

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
           +A  LF  +   G+KP+ +  + +I  LC  G+V   +   E +   G   + D+  +S 
Sbjct: 305 QACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAG--CTPDTYTYSS 362

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRI 444
            +  LC+   S E       ML+K +
Sbjct: 363 FIEHLCKMKGSQEGLSFIGEMLQKDV 388



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 159/313 (50%), Gaps = 10/313 (3%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CVV+     VI   C++ R++ +A+ VL  M     +P+   YN +++ FC +G +  A 
Sbjct: 181 CVVTCT--AVINAYCKEGRMS-DALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAM 237

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L+  M +  + PD +TY  +I+G C  G +E A  L ++M+  G  A+   Y+AL++ +
Sbjct: 238 ALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINAL 297

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G  ++A  L   +E  G    PN VT+ S+I   C  G +  A   L++M + GC P
Sbjct: 298 CKDGRTDQACSLFDSLETRG--IKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTP 355

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           +  T S+ I+  C      E    I +++      S   Y+ ++ +L++ +      + +
Sbjct: 356 DTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTW 415

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG-- 422
            +M++SG  PD +  +  +R  C+ G++ E   +  ++ K G   +VD+  ++ L+ G  
Sbjct: 416 GEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGV--TVDTMAYNTLMDGHA 473

Query: 423 -LCRKNHSVEAAK 434
            + + +H+V   K
Sbjct: 474 SIGQTDHAVSILK 486



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 141/312 (45%), Gaps = 22/312 (7%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I +LC K + + E +  + +M + D++P T+ Y  VI    ++ +          M    
Sbjct: 364 IEHLC-KMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSG 422

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             PD++TY + ++ +C  GRL +A  +   M ++G   + +AY+ L+DG   +G  + A+
Sbjct: 423 CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAV 482

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL-----------------GILDRM 297
            +L +M        PN  TY  +++      ++++ L                 G+ D M
Sbjct: 483 SILKQMTSVAS--VPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVM 540

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           +     PN  T S++++GF  +G  +EA  L+  +       +   Y++LV    ++KR 
Sbjct: 541 KKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRY 600

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
            +A  L   M+  G  P  ++   ++  L   GQ  +   ++ +     +  S D  +  
Sbjct: 601 LDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDY--SPDEIVWK 658

Query: 418 VLLLGLCRKNHS 429
           V++ GL +K HS
Sbjct: 659 VIIDGLIKKGHS 670



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 139/314 (44%), Gaps = 23/314 (7%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R  ++A  +   +    ++P+ + +N++I   C+ G +  A + ++ M   
Sbjct: 293 LINALCKDGR-TDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSA 351

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  TY S I+  C     ++       M +     + V Y+ ++  + +  +    
Sbjct: 352 GCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLV 411

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
               GEM   G  C+P+VVTYT+ ++ +C +G + EA  +L  M   G   + +  +TL+
Sbjct: 412 ARTWGEMVSSG--CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 469

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G    G  D A  ++ ++ +  SV +   Y  L+  LVR + +++   L          
Sbjct: 470 DGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPL---------T 520

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P G+  ++ + ++         F L++ ++K  FL   +S  +S +L G      + EA 
Sbjct: 521 PAGVWKAIELTDV---------FGLFDVMKKNEFLP--NSGTYSSILEGFSEDGRTEEAT 569

Query: 434 KLARFMLKKRIWLQ 447
            L   M +  I L 
Sbjct: 570 SLVSLMKEDSISLN 583



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 6/170 (3%)

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TY +VI+  C +  +  AL  L  M   G  P+  T ++LI G+C    +D A  L DK+
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
              G       Y++L+     T R+ EA +LF +M     +PD    + +++ LC  G+ 
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEM----DQPDMHMYAALVKGLCKAGRG 128

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            EG  +   ++++G+  S  +  ++ ++   C +  + EA ++ + M +K
Sbjct: 129 EEGLLMLRRMKELGWRPSTRA--YAAVVDFRCWERKAKEAEEMLQEMFEK 176



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 6/162 (3%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--GLIDLYPDIITYVSMIKGFCNA 212
           M + +  P++  Y++++  F E G    A  L+  M    I L  DI  Y +++  FC +
Sbjct: 540 MKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDI--YTALVTCFCKS 597

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            R  DA  L   M +HG   +L++Y  LL G+   G  ++A E+   M     D SP+ +
Sbjct: 598 KRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIF--MNSRWKDYSPDEI 655

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            +  +I     KG    +  ++  +E + C P+  T + L +
Sbjct: 656 VWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTE 697


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 144/288 (50%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LCE  ++  +A  + ++M    + PD   Y  +I  FC+ G +  A      M  
Sbjct: 293 KVITFLCEAMKV-EKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRS 351

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           I    +++TY +++  +  A +L  A  +F  M   GC  N + YSAL+DG+C+ G +++
Sbjct: 352 IGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQK 411

Query: 253 ALE----LLGEMEKEGGD----------CSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A E    L+G  +  G D           +PNVVTY ++I   C    + +A  +LD M 
Sbjct: 412 ACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAML 471

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           + GC PN +    LI GFC  G +D A ++  ++   G + +   Y+SL+  + + +RL 
Sbjct: 472 SNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLD 531

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ S+M+ S   P+ +  + MI  LC  G+  +   L   +E+ G
Sbjct: 532 LAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKG 579



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 160/339 (47%), Gaps = 43/339 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KA    +A  +L  M      P+ IIY+ +I  FC+ G +  A E+   M   
Sbjct: 450 LIDGLC-KAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKC 508

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P + TY S+I       RL+ A  +   M    C  N+V Y+A++DG+CR+G  ++A
Sbjct: 509 GYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKA 568

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+LL  ME++G  CSPNVVTYT++I      G +  +L +  +M   GCAPN VT   LI
Sbjct: 569 LKLLSMMEEKG--CSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLI 626

Query: 314 KGFCVEGNLDEAYQLIDK---------------VVAG------------------GSVSS 340
              C  G LDEA+ L+ +               VV G                  G+V  
Sbjct: 627 NHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPI 686

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKML----ASGVKPDGLACSVMIRELCLGGQVLEGF 396
              Y  L+    +  RL+EA +L  +M+    +  +    +  S +I+ LCL  Q+ + F
Sbjct: 687 APVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTS-LIQALCLASQLEKAF 745

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            LY +I + G +  +   +   L+ GL + N   EA +L
Sbjct: 746 ELYSEITRKGVVPEL--SVFVCLIKGLIKVNKWNEALQL 782



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 140/297 (47%), Gaps = 18/297 (6%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG----- 178
           GC  +V     + +   KA+   +A  +  +M +    P+TI Y+ ++   C+ G     
Sbjct: 353 GCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKA 412

Query: 179 -----------DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
                      D + +D   +G     + P+++TY ++I G C A ++ DA  L   M  
Sbjct: 413 CEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLS 472

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
           +GC  N + Y AL+DG C++G ++ A E+   M K G    P V TYTS+I        +
Sbjct: 473 NGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGY--LPTVHTYTSLIDAMFKDRRL 530

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
             A+ +L +M    C PN VT + +I G C  G   +A +L+  +   G   +   Y++L
Sbjct: 531 DLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTAL 590

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +  L ++ ++  + +LF +M   G  P+ +   V+I   C  G + E   L  ++++
Sbjct: 591 IDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ 647



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 162/395 (41%), Gaps = 65/395 (16%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +A L +EA+  L +M      P+ + Y  ++  F +K  +     ++  M      P+  
Sbjct: 119 EASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPS 178

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI---------------- 244
            + S++  +CNA     A  L K M   GC    VAY+  +  I                
Sbjct: 179 LFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAE 238

Query: 245 -------------------------CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
                                    C +G  + A +++  M  +G    P+  TY+ VI 
Sbjct: 239 KVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGF--VPDTSTYSKVIT 296

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C    +++A  +   M+++G  P+  T + LI  FC  G +++A    D++ + G  +
Sbjct: 297 FLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSA 356

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y++L+   ++ K+L +A  +F++M+ +G  P+ +  S ++  LC  G++ +   +Y
Sbjct: 357 NVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVY 416

Query: 400 EDIEKIGFLSSVDSDI----------------HSVLLLGLCRKNHSVEAAKLARFMLKKR 443
             +  IG   +V SD                 +  L+ GLC+ +  V+A +L   ML   
Sbjct: 417 TKL--IGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNG 474

Query: 444 IWLQGPYVDKIVEHLKKSGD----EELITNLPKIG 474
                   D +++   K G     +E+   + K G
Sbjct: 475 CEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCG 509



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/383 (20%), Positives = 138/383 (36%), Gaps = 77/383 (20%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           ++ +F  RP    YN ++++    G M     + K M       D  T     +  C  G
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 214 RLEDA--------------------CGLFKV------------MKRHGCAANLVAYSALL 241
           R  DA                     GL +             M+ + C  N+V Y  LL
Sbjct: 90  RWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLL 149

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G  +   +     ++  M KEG  C+PN   + S++  +C       A  +L RM   G
Sbjct: 150 TGFLKKKQLGWCKRIINMMMKEG--CNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCG 207

Query: 302 CAP-----------------------------------------NRVTISTLIKGFCVEG 320
           C P                                         N+V  +   +  C  G
Sbjct: 208 CPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMG 267

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
             D A+Q+I  ++  G V     YS ++  L    ++++A  LF +M + GV PD    +
Sbjct: 268 KFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYT 327

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           ++I   C  G + +    ++++  IG  ++V +  ++ LL    +     +A+ +   M+
Sbjct: 328 ILIDSFCKAGLIEQARSWFDEMRSIGCSANVVT--YTALLHAYLKAKQLPQASDIFNRMI 385

Query: 441 KKRIWLQGPYVDKIVEHLKKSGD 463
                        +V+ L K+G+
Sbjct: 386 DAGCPPNTITYSALVDGLCKAGE 408



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            AD  +K  G     P   TY ++++    AG+++    + K M   G   +        
Sbjct: 26  TADPELKDFGY---RPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFA 82

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
             +C+ G    AL ++   E+E  D   + V  T +I       +  EA+  L RM    
Sbjct: 83  QALCKEGRWSDALVMI---ERE--DFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNS 137

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C PN VT  TL+ GF  +  L    ++I+ ++  G   +   ++SLV      +    A 
Sbjct: 138 CIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAY 197

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           KL  +M   G  P  +A ++ I  +C GG+ L    L    EK+
Sbjct: 198 KLLKRMADCGCPPGYVAYNIFIGSIC-GGEELPSPDLLALAEKV 240



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 7/211 (3%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +E+GC  +V     + +   K+   + ++ +  +M      P+ + Y  +I   C  G +
Sbjct: 576 EEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLL 635

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L+  M        +  Y S+++GF  + +   + GL + ++ HG       Y  L
Sbjct: 636 DEAHSLLSEMKQTYWPKYLQGYCSVVQGF--SKKFIASLGLLEELESHGTVPIAPVYGLL 693

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVT---YTSVIQIFCGKGMMKEALGILDRM 297
           +D   + G +E ALEL  EM +     S N+ +   YTS+IQ  C    +++A  +   +
Sbjct: 694 IDNFSKAGRLEEALELHKEMMELSS--SLNITSKDMYTSLIQALCLASQLEKAFELYSEI 751

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
              G  P       LIKG       +EA QL
Sbjct: 752 TRKGVVPELSVFVCLIKGLIKVNKWNEALQL 782


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 170/345 (49%), Gaps = 36/345 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  +C++ R+   A+ +L +M +  + P+ + Y+ +I   C  G++  A  L   M L 
Sbjct: 250 LIDGMCKEGRI-EVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLR 308

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               +I T+  +IKG    G+L +A  L+K+M + GC  N+VAY+ L+ G+C  GS+E A
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEA 368

Query: 254 LELLGEMEKEG------------------GD---------------CSPNVVTYTSVIQI 280
           L++  +M++ G                  GD               C PNVVTYT ++ +
Sbjct: 369 LQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV 428

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C   M  +A  ++++M   GC PN +T +T IKG C  G ++ A +L++++   G + +
Sbjct: 429 LCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPN 488

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ L+  L R  + +EA  LF ++ A  ++P+ +  + ++      G + E   L+ 
Sbjct: 489 ITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFG 548

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
                G  ++ DS  ++ ++   C++     AA+L   +   + W
Sbjct: 549 KALVRG--TAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEW 591



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 140/276 (50%), Gaps = 4/276 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            +P   +YN +I   C++G +  A +L+  M    + P++++Y  +I   C +G +E A 
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF  M   GC AN+  ++ L+ G    G +  AL+L   M ++G  C PNVV Y ++I 
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG--CEPNVVAYNTLIH 357

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G ++EAL + D+M+  GC PN  T S LI GF   G+L  A +  +++++ G   
Sbjct: 358 GLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRP 417

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+ +V  L +     +A  L  KM   G  P+ +  +  I+ LC  G+V     L 
Sbjct: 418 NVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLL 477

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           E ++  G L ++ +  ++ LL  L R N   EA  L
Sbjct: 478 ERMQGHGCLPNITT--YNELLDALFRMNKYEEAFGL 511



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 173/368 (47%), Gaps = 23/368 (6%)

Query: 80  FFIWAALQSSYRHSSFMY-------NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132
           FF   A  ++++H++  Y        R CEM  ++        +++  K +G      + 
Sbjct: 60  FFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQY-------ILQQMKMDGINCCEDLF 112

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
             I N  ++   A +A+ +  ++ EF  +P   IYN+++     +      + L   M  
Sbjct: 113 ICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKK 172

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             L P++ TY  ++K  C   R++ A  LF  M   GC  + V Y+ ++  +C+ G ++ 
Sbjct: 173 DGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDD 232

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A EL G  +       P+V  Y ++I   C +G ++ A+ +L  M   G  PN V+ S +
Sbjct: 233 ARELAGRFK-------PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCI 285

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I   CV GN++ A+ L  ++   G  ++   ++ L+       +L EA  L+  M+  G 
Sbjct: 286 INSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGC 345

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           +P+ +A + +I  LC  G + E   + + +++ G L +V +  +S+L+ G  +    V A
Sbjct: 346 EPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTT--YSILIDGFAKSGDLVGA 403

Query: 433 AKLARFML 440
           ++    M+
Sbjct: 404 SETWNRMI 411



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 133/272 (48%), Gaps = 3/272 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V +  +  GC+ +V    ++ +   K+     A     +M     RP+ + Y  ++ +
Sbjct: 369 LQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV 428

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C+      A+ L++ M L    P+ IT+ + IKG C  GR+E A  L + M+ HGC  N
Sbjct: 429 LCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPN 488

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+ LLD + R+   E A  L  E+E    +  PN+VTY +V+  F   GMM EAL +
Sbjct: 489 ITTYNELLDALFRMNKYEEAFGLFQEIEAR--NLQPNLVTYNTVLYGFSRAGMMGEALQL 546

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELV 352
             +    G AP+ +T +T+I  +C +G +  A QL+++V +          Y+SL+    
Sbjct: 547 FGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGAC 606

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
               ++EA     K +  G+ P+    + ++R
Sbjct: 607 NWMNIEEAMAFLDKAINQGICPNFATWNALVR 638



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRK 154
           M +  C+ S   Q  S+    VE    EGC   ++     I  LC   R+   AM +L +
Sbjct: 425 MVDVLCKNSMFDQANSL----VEKMTLEGCTPNTITFNTFIKGLCGNGRV-EWAMKLLER 479

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M      P+   YN ++           A  L + +   +L P+++TY +++ GF  AG 
Sbjct: 480 MQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGM 539

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           + +A  LF      G A + + Y+ ++   C+ G ++ A +L+ E      +  P+++TY
Sbjct: 540 MGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLV-ERVSSMKEWHPDIITY 598

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           TS+I   C    ++EA+  LD+    G  PN  T + L++ F
Sbjct: 599 TSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 150/304 (49%), Gaps = 18/304 (5%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R + +A  +L++M E  + PD + YN +I  F ++G    A+EL   M   
Sbjct: 296 MIVGFCSSGRWS-DAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 354

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ ITY SMI GFC   RL+ A  +F +M   GC+ NL+ ++ L+DG C    ++  
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +ELL EM + G     +  TY ++I  F   G +  AL +L  M + G  P+ VT  TL+
Sbjct: 415 MELLHEMTETG--LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 314 KGFCVEGNLDEAYQLIDKVVA------------GGSVSSGGCYSSLVVELVRTKRLKEAE 361
            G C  G L +A ++  KV+              G       Y+ L+  L+   +  EAE
Sbjct: 473 DGLCDNGKLKDALEMF-KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +L+ +M   G+ PD +  S MI  LC   ++ E   +++ +    F  +V +   + L+ 
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVT--FTTLIN 589

Query: 422 GLCR 425
           G C+
Sbjct: 590 GYCK 593



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 143/278 (51%), Gaps = 17/278 (6%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  ++     + +    A+  ++ M +L +M E  L  DT  YN +I  F   GD+ A
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNA 448

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCA 231
           A +L++ M    L PDI+T  +++ G C+ G+L+DA  +FKVM++           +G  
Sbjct: 449 ALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVE 508

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            ++  Y+ L+ G+   G    A EL  EM   G    P+ +TY+S+I   C +  + EA 
Sbjct: 509 PDVQTYNILISGLINEGKFLEAEELYEEMPHRG--IVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            + D M +   +PN VT +TLI G+C  G +D+  +L  ++   G V++   Y +L+   
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            +   +  A  +F +M++SGV PD    ++ IR +  G
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPD----TITIRNMLTG 660



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 147/298 (49%), Gaps = 7/298 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC + R++ EA+ +  +M E   RP+ + +  ++   C +G ++ A  L+ 
Sbjct: 150 VTFNTLLHGLCVEDRVS-EALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLD 208

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRL 247
            M    L P  ITY +++ G C  G    A  L + M+       N+V YSA++D +C+ 
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    A  L  EM+++G    P++ TY S+I  FC  G   +A  +L  M     +P+ V
Sbjct: 269 GRHSDAQNLFTEMQEKG--IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + LI  F  EG   EA +L D+++  G + +   YSS++    +  RL  AE +F  M
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLG 422
              G  P+ +  + +I   C   ++ +G  L  ++ + G +   ++ ++ IH   L+G
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 151/314 (48%), Gaps = 9/314 (2%)

Query: 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           K+M V+  + E+  L    + + +KM    +R D   +  +I+ FC    +  A      
Sbjct: 84  KLMGVVVRM-ERPDLV---ISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGK 139

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           +  + L+PD++T+ +++ G C   R+ +A  LF  M    C  N+V ++ L++G+CR G 
Sbjct: 140 ITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGR 199

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-CAPNRVT 308
           +  A+ LL  M ++G    P  +TY +++   C KG    AL +L +ME +    PN V 
Sbjct: 200 IVEAVALLDRMMEDG--LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S +I   C +G   +A  L  ++   G       Y+S++V    + R  +AE+L  +ML
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
              + PD +  + +I      G+  E   LY+++   G + +  +  +S ++ G C++N 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT--YSSMIDGFCKQNR 375

Query: 429 SVEAAKLARFMLKK 442
              A  +   M  K
Sbjct: 376 LDAAEHMFYLMATK 389



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 138 LCEKARLAN--EAMWVLRK--------MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           LC+  +L +  E   V++K         P   + PD   YN +I     +G  + A+EL 
Sbjct: 475 LCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 534

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M    + PD ITY SMI G C   RL++A  +F  M     + N+V ++ L++G C+ 
Sbjct: 535 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 594

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ++  LEL  EM + G     N +TY ++I  F   G +  AL I   M + G  P+ +
Sbjct: 595 GRVDDGLELFCEMGRRG--IVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI 652

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
           TI  ++ G   +  L  A  +++K+     +S GG
Sbjct: 653 TIRNMLTGLWSKEELKRAVAMLEKLQMSMDLSFGG 687



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 113/238 (47%), Gaps = 3/238 (1%)

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF     LEDA  LF  M R     ++V +  L+  + R+   +  + L  +ME++   C
Sbjct: 53  GFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRC 112

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             ++ ++T +I+ FC    +  AL    ++  LG  P+ VT +TL+ G CVE  + EA  
Sbjct: 113 --DIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALN 170

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  ++       +   +++L+  L R  R+ EA  L  +M+  G++P  +    ++  +C
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
             G  +    L   +E++  +   +  I+S ++  LC+     +A  L   M +K I+
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIP-NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 164/336 (48%), Gaps = 4/336 (1%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTII 166
           Q PS    V+    + G  ++V    ++    C+    +++AM +   M    L PD + 
Sbjct: 108 QKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGD-SHKAMDLFCMMKRNCLIPDCVS 166

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN VI   C+   ++ A EL K M   +  P+ +T+ ++I GFC  G +E+  GL + M+
Sbjct: 167 YNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEME 226

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           + G   ++  YSAL+ G C  G +ER  EL  EM ++  + +PNVVTY+ ++   C K  
Sbjct: 227 KMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRK--NVTPNVVTYSCLMNALCKKQK 284

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
            KEA  +LD M      P+ V  + L  G    G   +A +++D +V  G   +   Y++
Sbjct: 285 WKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNA 344

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++  L +  R+ +A  +   M   G KPD +  S +++ LC  G++ E   L   +    
Sbjct: 345 IINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKE 404

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           F    D    ++++  LC++     A ++   M+++
Sbjct: 405 FHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVER 440



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 12/301 (3%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADELMKGMGLID 194
           LC+K +   EA  +L  M    +RPD + Y  +     + G   D I   +LM   G   
Sbjct: 279 LCKKQKW-KEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGE-- 335

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             P+ +TY ++I G C  GR++DA G+ + M + G   ++V YS L+ G+C +G ++ A+
Sbjct: 336 -EPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAV 394

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           +LL  +  +     P+V  +  VIQ  C +  ++ A  +   M   G   N VT + LI 
Sbjct: 395 DLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILID 454

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G+   G L +A +L    V  G   +   Y+ L+  L + + L  A+ LF+K  ASG +P
Sbjct: 455 GYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRP 514

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV-LLLGLCRKNHSVEAA 433
                + ++  LC    V +   L++++      ++ D D+ S  +++    K   VE+A
Sbjct: 515 TVSEYNTLMASLCRESSVEQARNLFQEMRN----ANHDPDVVSFNIIIDGTLKAGDVESA 570

Query: 434 K 434
           K
Sbjct: 571 K 571



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 160/343 (46%), Gaps = 8/343 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ R+ ++A+ +L  M +   +PD + Y+ +++  C  G +  A +L+  +   
Sbjct: 345 IINGLCKEGRV-DDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSK 403

Query: 194 DLY--PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           + +  PD+  +  +I+  C   RL  A  ++  M   G  +N+V Y+ L+DG    G + 
Sbjct: 404 EFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLT 463

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
           +ALEL  +    G   SPN  TYT +I   C   M+  A G+ ++  A G  P     +T
Sbjct: 464 KALELWKDAVDSG--ISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNT 521

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           L+   C E ++++A  L  ++           ++ ++   ++   ++ A++L  +ML   
Sbjct: 522 LMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMN 581

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           + PD +  S++I      GQ+ E   LYE +   G +   D+ +   LL G   K  + +
Sbjct: 582 LVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVP--DAVLFDSLLKGYSLKGKTEK 639

Query: 432 AAKLARFMLKKRIWLQGPYVDKIVEHL-KKSGDEELITNLPKI 473
              + + M  K + L       I+  L   S D ++   LPK 
Sbjct: 640 VVSMLQQMADKDVVLDSKLTSTILACLCNMSKDVDIEKILPKF 682



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 133/286 (46%), Gaps = 35/286 (12%)

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M  + ++P   +  ++I+ F N  +   A G+  ++ + G   N+  ++ LL G C+ G 
Sbjct: 85  MASVSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGD 144

Query: 250 MERALELLGEM---------------------------------EKEGGDCSPNVVTYTS 276
             +A++L   M                                 E +GG+C PN VT+++
Sbjct: 145 SHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSA 204

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I  FC  G ++E  G+L+ ME +G   +    S LI GFC +G+++   +L ++++   
Sbjct: 205 LIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKN 264

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
              +   YS L+  L + ++ KEA ++   M    V+PD +A +V+   L   G+  +  
Sbjct: 265 VTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAI 324

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            + + + K G     ++  ++ ++ GLC++    +A  +   M KK
Sbjct: 325 KVLDLMVKRG--EEPNNVTYNAIINGLCKEGRVDDALGILETMAKK 368


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 150/304 (49%), Gaps = 18/304 (5%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R + +A  +L++M E  + PD + YN +I  F ++G    A+EL   M   
Sbjct: 296 MIVGFCSSGRWS-DAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 354

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ ITY SMI GFC   RL+ A  +F +M   GC+ NL+ ++ L+DG C    ++  
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +ELL EM + G     +  TY ++I  F   G +  AL +L  M + G  P+ VT  TL+
Sbjct: 415 MELLHEMTETG--LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 314 KGFCVEGNLDEAYQLIDKVVA------------GGSVSSGGCYSSLVVELVRTKRLKEAE 361
            G C  G L +A ++  KV+              G       Y+ L+  L+   +  EAE
Sbjct: 473 DGLCDNGKLKDALEMF-KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +L+ +M   G+ PD +  S MI  LC   ++ E   +++ +    F  +V +   + L+ 
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVT--FTTLIN 589

Query: 422 GLCR 425
           G C+
Sbjct: 590 GYCK 593



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 143/278 (51%), Gaps = 17/278 (6%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  ++     + +    A+  ++ M +L +M E  L  DT  YN +I  F   GD+ A
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNA 448

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCA 231
           A +L++ M    L PDI+T  +++ G C+ G+L+DA  +FKVM++           +G  
Sbjct: 449 ALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVE 508

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            ++  Y+ L+ G+   G    A EL  EM   G    P+ +TY+S+I   C +  + EA 
Sbjct: 509 PDVQTYNILISGLINEGKFLEAEELYEEMPHRG--IVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            + D M +   +PN VT +TLI G+C  G +D+  +L  ++   G V++   Y +L+   
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            +   +  A  +F +M++SGV PD    ++ IR +  G
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPD----TITIRNMLTG 660



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 147/298 (49%), Gaps = 7/298 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC + R++ EA+ +  +M E   RP+ + +  ++   C +G ++ A  L+ 
Sbjct: 150 VTFTTLLHGLCVEDRVS-EALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLD 208

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRL 247
            M    L P  ITY +++ G C  G    A  L + M+       N+V YSA++D +C+ 
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    A  L  EM+++G    P++ TY S+I  FC  G   +A  +L  M     +P+ V
Sbjct: 269 GRHSDAQNLFTEMQEKG--IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + LI  F  EG   EA +L D+++  G + +   YSS++    +  RL  AE +F  M
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLG 422
              G  P+ +  + +I   C   ++ +G  L  ++ + G +   ++ ++ IH   L+G
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 152/314 (48%), Gaps = 9/314 (2%)

Query: 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           K+M V+  + E+  L    + + +KM    +R D   +N +I+ FC    +  A      
Sbjct: 84  KLMGVVVRM-ERPDLV---ISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGK 139

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           +  + L+PD++T+ +++ G C   R+ +A  LF  M    C  N+V ++ L++G+CR G 
Sbjct: 140 ITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGR 199

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-CAPNRVT 308
           +  A+ LL  M ++G    P  +TY +++   C KG    AL +L +ME +    PN V 
Sbjct: 200 IVEAVALLDRMMEDG--LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S +I   C +G   +A  L  ++   G       Y+S++V    + R  +AE+L  +ML
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
              + PD +  + +I      G+  E   LY+++   G + +  +  +S ++ G C++N 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTIT--YSSMIDGFCKQNR 375

Query: 429 SVEAAKLARFMLKK 442
              A  +   M  K
Sbjct: 376 LDAAEHMFYLMATK 389



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 138 LCEKARLAN--EAMWVLRK--------MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           LC+  +L +  E   V++K         P   + PD   YN +I     +G  + A+EL 
Sbjct: 475 LCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 534

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M    + PD ITY SMI G C   RL++A  +F  M     + N+V ++ L++G C+ 
Sbjct: 535 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 594

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ++  LEL  EM + G     N +TY ++I  F   G +  AL I   M + G  P+ +
Sbjct: 595 GRVDDGLELFCEMGRRG--IVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI 652

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
           TI  ++ G   +  L  A  +++K+     +S GG
Sbjct: 653 TIRNMLTGLWSKEELKRAVAMLEKLQMSMDLSFGG 687



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 112/238 (47%), Gaps = 3/238 (1%)

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF     LEDA  LF  M R     ++V +  L+  + R+   +  + L  +ME++   C
Sbjct: 53  GFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRC 112

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             ++ ++  +I+ FC    +  AL    ++  LG  P+ VT +TL+ G CVE  + EA  
Sbjct: 113 --DIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALN 170

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  ++       +   +++L+  L R  R+ EA  L  +M+  G++P  +    ++  +C
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
             G  +    L   +E++  +   +  I+S ++  LC+     +A  L   M +K I+
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIP-NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 131/240 (54%), Gaps = 2/240 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N +I  + + GD+     L   M      PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G+L++A  LF  M  +G   N V ++ L+ G C+   ++ A+E+  +M  +G   
Sbjct: 215 GLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQG--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+   ++D M   G  P++++ +TLI G C EG+L+ A +
Sbjct: 273 SPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L +K++          Y++L+  L R  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 333 LRNKMIQESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFC 392



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 176/360 (48%), Gaps = 18/360 (5%)

Query: 80  FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139
           F++++ L  +Y  S F+ + A +  R+ +   I +      K    ++  +  K++++  
Sbjct: 66  FYVFSGLMIAYLESGFVRD-AVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDF- 123

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
                        +++ E         +N +++ FC++G+M  A  +   +    L P +
Sbjct: 124 ------------YKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSV 171

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           +++ ++I G+   G L++   L   M   G   ++  YS L++G+C+ G ++ A EL  E
Sbjct: 172 VSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNE 231

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M   G    PN VT+T++I   C    +  A+ I  +M + G +P+ +T +TLI G C +
Sbjct: 232 MLDNG--LVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKK 289

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G L + + LID+++  G       Y++L+    +   L+ A +L +KM+   ++ D +A 
Sbjct: 290 GELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAY 349

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + +I  LC  G+  +   +  ++  +G     D+  +++++   C+K  S  A+KL R M
Sbjct: 350 TALISCLCREGRASDAEKMLREMLSVGL--KPDNGTYTMIINEFCKKRDSKTASKLLREM 407



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 146/309 (47%), Gaps = 16/309 (5%)

Query: 76  MGIRFF--IW----AALQSSYRHSSFMYN----RACEMSRIKQNPSIIIDVVEAYKEEGC 125
           M  R+F  +W      L+  Y  S + +N    R C+   ++   S    V +A  + G 
Sbjct: 112 MEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQS----VFDAITKWGL 167

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
             SV     + N   K    +E   +   M     +PD   Y+ +I   C++G +  A+E
Sbjct: 168 RPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANE 227

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L   M    L P+ +T+ ++I G C   +++ A  ++K M   G + +L+ Y+ L+ G+C
Sbjct: 228 LFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLC 287

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G +++  +L+ EM   G    P+ ++YT++I   C +G ++ AL + ++M       +
Sbjct: 288 KKGELKQVHDLIDEMIMNG--LKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLD 345

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  + LI   C EG   +A +++ ++++ G     G Y+ ++ E  + +  K A KL  
Sbjct: 346 DVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLR 405

Query: 366 KMLASGVKP 374
           +M   G  P
Sbjct: 406 EMQRDGPLP 414



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 3/180 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  ++ + AM + ++M    L PD I YN +I   C+KG++    +L+ 
Sbjct: 242 VTFTTLIHGHCKNEKV-DLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLID 300

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  L PD I+Y ++I G C  G LE A  L   M +     + VAY+AL+  +CR G
Sbjct: 301 EMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREG 360

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G    P+  TYT +I  FC K   K A  +L  M+  G  P  VT
Sbjct: 361 RASDAEKMLREMLSVG--LKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLPGVVT 418



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 112/218 (51%), Gaps = 4/218 (1%)

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G  A+L  ++ L+   C+ G M  A  +   + K G    P+VV++ ++I  +   G + 
Sbjct: 131 GYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWG--LRPSVVSFNTLINGYIKLGDLD 188

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           E   +   M A G  P+  T S LI G C EG LDEA +L ++++  G V +G  +++L+
Sbjct: 189 EGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLI 248

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
               + +++  A +++ +ML+ G+ PD +  + +I  LC  G++ +   L +++   G  
Sbjct: 249 HGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGL- 307

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
              D   ++ L+ G C++     A +L   M+++ I L
Sbjct: 308 -KPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRL 344


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 150/304 (49%), Gaps = 18/304 (5%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R + +A  +L++M E  + PD + YN +I  F ++G    A+EL   M   
Sbjct: 296 MIVGFCSSGRWS-DAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 354

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ ITY SMI GFC   RL+ A  +F +M   GC+ NL+ ++ L+DG C    ++  
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +ELL EM + G     +  TY ++I  F   G +  AL +L  M + G  P+ VT  TL+
Sbjct: 415 MELLHEMTETG--LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 314 KGFCVEGNLDEAYQLIDKVVA------------GGSVSSGGCYSSLVVELVRTKRLKEAE 361
            G C  G L +A ++  KV+              G       Y+ L+  L+   +  EAE
Sbjct: 473 DGLCDNGKLKDALEMF-KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +L+ +M   G+ PD +  S MI  LC   ++ E   +++ +    F  +V +   + L+ 
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVT--FTTLIN 589

Query: 422 GLCR 425
           G C+
Sbjct: 590 GYCK 593



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 143/278 (51%), Gaps = 17/278 (6%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  ++     + +    A+  ++ M +L +M E  L  DT  YN +I  F   GD+ A
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNA 448

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCA 231
           A +L++ M    L PDI+T  +++ G C+ G+L+DA  +FKVM++           +G  
Sbjct: 449 ALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVE 508

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            ++  Y+ L+ G+   G    A EL  EM   G    P+ +TY+S+I   C +  + EA 
Sbjct: 509 PDVQTYNILISGLINEGKFLEAEELYEEMPHRG--IVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            + D M +   +PN VT +TLI G+C  G +D+  +L  ++   G V++   Y +L+   
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            +   +  A  +F +M++SGV PD    ++ IR +  G
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPD----TITIRNMLTG 660



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 146/298 (48%), Gaps = 7/298 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC + R++ EA+    +M E   RP+ + +  ++   C +G ++ A  L+ 
Sbjct: 150 VTFTTLLHGLCVEDRVS-EALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLD 208

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRL 247
            M    L P  ITY +++ G C  G    A  L + M+       N+V YSA++D +C+ 
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    A  L  EM+++G    P++ TY S+I  FC  G   +A  +L  M     +P+ V
Sbjct: 269 GRHSDAQNLFTEMQEKG--IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + LI  F  EG   EA +L D+++  G + +   YSS++    +  RL  AE +F  M
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLG 422
              G  P+ +  + +I   C   ++ +G  L  ++ + G +   ++ ++ IH   L+G
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 140/291 (48%), Gaps = 5/291 (1%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           +KM    +R D   +N +I+ FC    +  A      +  + L+PD++T+ +++ G C  
Sbjct: 103 QKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVE 162

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            R+ +A   F  M    C  N+V ++ L++G+CR G +  A+ LL  M ++G    P  +
Sbjct: 163 DRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG--LQPTQI 220

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           TY +++   C KG    AL +L +ME +    PN V  S +I   C +G   +A  L  +
Sbjct: 221 TYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +   G       Y+S++V    + R  +AE+L  +ML   + PD +  + +I      G+
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             E   LY+++   G + +  +  +S ++ G C++N    A  +   M  K
Sbjct: 341 FFEAEELYDEMLPRGIIPNTIT--YSSMIDGFCKQNRLDAAEHMFYLMATK 389



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 138 LCEKARLAN--EAMWVLRK--------MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           LC+  +L +  E   V++K         P   + PD   YN +I     +G  + A+EL 
Sbjct: 475 LCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 534

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M    + PD ITY SMI G C   RL++A  +F  M     + N+V ++ L++G C+ 
Sbjct: 535 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 594

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ++  LEL  EM + G     N +TY ++I  F   G +  AL I   M + G  P+ +
Sbjct: 595 GRVDDGLELFCEMGRRG--IVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI 652

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
           TI  ++ G   +  L  A  +++K+     +S GG
Sbjct: 653 TIRNMLTGLWSKEELKRAVAMLEKLQMSMDLSFGG 687



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 111/238 (46%), Gaps = 3/238 (1%)

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF     LEDA  LF  M R     ++V +  L+  + R+   +  + L  +ME++   C
Sbjct: 53  GFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRC 112

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             ++ ++  +I+ FC    +  AL    ++  LG  P+ VT +TL+ G CVE  + EA  
Sbjct: 113 --DIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALD 170

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              ++       +   +++L+  L R  R+ EA  L  +M+  G++P  +    ++  +C
Sbjct: 171 FFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
             G  +    L   +E++  +   +  I+S ++  LC+     +A  L   M +K I+
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIP-NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 167/332 (50%), Gaps = 9/332 (2%)

Query: 118 EAYKE---EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           E Y+E    G  V+V  + ++ N LC+  ++ N   + L  M E  + PD + YN +I  
Sbjct: 83  EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSF-LSDMEEKGVFPDVVTYNTLINA 141

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C +G +  A ELM  M    L P + TY ++I G C  G+   A G+   M + G + +
Sbjct: 142 YCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 201

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
              Y+ LL   CR  +M  A  +  EM  +G    P++V+++++I +    G + +AL  
Sbjct: 202 TATYNILLVECCRNDNMMDAERIFDEMPSQG--VVPDLVSFSALIGLLSKNGCLDQALKY 259

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M+  G AP+ V  + LI GFC  G + EA ++ D+++  G V     Y++++  L +
Sbjct: 260 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK 319

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            K L EA++LF++M   GV PD    + +I      G + +   L+E + +      V +
Sbjct: 320 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 379

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
             ++ L+ G C+ +   +  +L   M+ +RI+
Sbjct: 380 --YNTLIDGFCKGSEMEKVNELWNDMISRRIY 409



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 168/327 (51%), Gaps = 5/327 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +    A  VL +M +  + PDT  YN ++   C   +M+ A+ +   M   
Sbjct: 173 IINGLCKTGKYL-RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQ 231

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD++++ ++I      G L+ A   F+ MK  G A + V Y+ L+ G CR G M  A
Sbjct: 232 GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEA 291

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L++  EM ++G  C  +VVTY +++   C + M+ EA  +   M   G  P+  T +TLI
Sbjct: 292 LKVRDEMLEQG--CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLI 349

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+  +GN+++A  L + ++          Y++L+    +   +++  +L++ M++  + 
Sbjct: 350 NGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY 409

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ ++  ++I   C  G V E F L++++ + GF +++ +   + ++ G CR  ++V+A 
Sbjct: 410 PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIIT--CNTIVKGYCRAGNAVKAD 467

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKK 460
           +    ML K I   G   + ++    K
Sbjct: 468 EFLSNMLLKGIVPDGITYNTLINGFIK 494



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 146/287 (50%), Gaps = 2/287 (0%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E+GCV+ V     I N   K ++ +EA  +  +M E  + PD   +  +I  + + G+M 
Sbjct: 300 EQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMN 359

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  L + M   +L PD++TY ++I GFC    +E    L+  M       N ++Y  L+
Sbjct: 360 KAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 419

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G C +G +  A  L  EM ++G + +  ++T  ++++ +C  G   +A   L  M   G
Sbjct: 420 NGYCNMGCVSEAFRLWDEMVEKGFEAT--IITCNTIVKGYCRAGNAVKADEFLSNMLLKG 477

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+ +T +TLI GF  E N+D A+ L++K+   G +     Y+ ++    R  R++EAE
Sbjct: 478 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAE 537

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
            +  KM+  GV PD    + +I        + E F +++++ + GF+
Sbjct: 538 LIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFV 584



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 2/254 (0%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G          + N   K    N+A+ +   M + +L+PD + YN +I  FC+  +M 
Sbjct: 335 ERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEME 394

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
             +EL   M    +YP+ I+Y  +I G+CN G + +A  L+  M   G  A ++  + ++
Sbjct: 395 KVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIV 454

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G CR G+  +A E L  M  +G    P+ +TY ++I  F  +  M  A  ++++ME  G
Sbjct: 455 KGYCRAGNAVKADEFLSNMLLKG--IVPDGITYNTLINGFIKEENMDRAFALVNKMENSG 512

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+ +T + ++ GF  +G + EA  ++ K++  G       Y+SL+   V    LKEA 
Sbjct: 513 LLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAF 572

Query: 362 KLFSKMLASGVKPD 375
           ++  +ML  G  PD
Sbjct: 573 RVHDEMLQRGFVPD 586



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 153/329 (46%), Gaps = 4/329 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + +    +G V  +     +  L  K    ++A+   R M    L PD +IY  +I  FC
Sbjct: 224 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC 283

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G M  A ++   M       D++TY +++ G C    L +A  LF  M   G   +  
Sbjct: 284 RNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY 343

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L++G  + G+M +A+ L   M +   +  P+VVTY ++I  FC    M++   + +
Sbjct: 344 TFTTLINGYSKDGNMNKAVTLFEMMIQR--NLKPDVVTYNTLIDGFCKGSEMEKVNELWN 401

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M +    PN ++   LI G+C  G + EA++L D++V  G  ++    +++V    R  
Sbjct: 402 DMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAG 461

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
              +A++  S ML  G+ PDG+  + +I        +   F L   +E  G L  V +  
Sbjct: 462 NAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVIT-- 519

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           ++V+L G  R+    EA  +   M+++ +
Sbjct: 520 YNVILNGFSRQGRMQEAELIMLKMIERGV 548



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 140/275 (50%), Gaps = 8/275 (2%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S++ G    G ++ A  +++ + R G   N+   + +++ +C+   +E     L +ME++
Sbjct: 67  SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEK 126

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G    P+VVTY ++I  +C +G+++EA  ++D M   G  P   T + +I G C  G   
Sbjct: 127 G--VFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYL 184

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A  ++D+++  G       Y+ L+VE  R   + +AE++F +M + GV PD ++ S +I
Sbjct: 185 RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI 244

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
             L   G + +    + D++  G   + D+ I+++L+ G CR     EA K+   ML++ 
Sbjct: 245 GLLSKNGCLDQALKYFRDMKNAGL--APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 302

Query: 444 IWLQGPYVDKIVEHLKK----SGDEELITNLPKIG 474
             L     + I+  L K    S  +EL T + + G
Sbjct: 303 CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERG 337


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 162/344 (47%), Gaps = 39/344 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +  +E+  +  +M + +   D   Y+ +I   C  G++  A  + K M   
Sbjct: 261 MINGLCKCGKF-DESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAEN 319

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC----------------------- 230
            + PD++ Y +M+ G+  AGR+E+   L+KVM++ GC                       
Sbjct: 320 GVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAI 379

Query: 231 -----------AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
                       A+ + Y  L+ G+C+ G + +AL +L E E   GD   +   Y+S+I 
Sbjct: 380 SIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL--DTFAYSSMIN 437

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C +G + E  G+LD+M   GC PN    + +I GF     L++A +    +V+ G   
Sbjct: 438 GLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFP 497

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y++L+  L + +R  EA  L  +ML  G KP+ +  S+++  LC G ++     L+
Sbjct: 498 TVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLW 557

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
               + GF    D  +H++++ GLC      +A +L   M +++
Sbjct: 558 CQALEKGF--KPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRK 599



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 5/320 (1%)

Query: 110 PSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           P   +D+ +   E  GC   ++    + N   ++   +EA           L P+   YN
Sbjct: 94  PDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYN 153

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I++ C K     A EL+  M      PD+ +Y ++I      G + DA  LF  M   
Sbjct: 154 ILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER 213

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   ++  Y+ L+DG  + G +  A E+   + K G    PN+ +Y  +I   C  G   
Sbjct: 214 GVTPDVACYNILIDGFFKKGDILNASEIWERLLK-GPSVYPNIPSYNVMINGLCKCGKFD 272

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           E+  I  RM+      +  T STLI G C  GNLD A ++  ++   G       Y++++
Sbjct: 273 ESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTML 332

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
              +R  R++E  +L+  M   G +   ++ +++IR L    +V E   ++E + +    
Sbjct: 333 NGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKD-- 389

Query: 409 SSVDSDIHSVLLLGLCRKNH 428
              DS  + VL+ GLC+  +
Sbjct: 390 CCADSMTYGVLVHGLCKNGY 409



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           EA    G + +     +I  LC + RL +E   VL +M +   +P+  + N VI  F   
Sbjct: 419 EAENGRGDLDTFAYSSMINGLCREGRL-DEVAGVLDQMTKHGCKPNPHVCNAVINGFVRA 477

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
             +  A      M     +P ++TY ++I G   A R  +A  L K M   G   N++ Y
Sbjct: 478 SKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITY 537

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           S L++G+C+   ++ AL L  +  ++G    P+V  +  +I   C  G +++AL +   M
Sbjct: 538 SLLMNGLCQGKKLDMALNLWCQALEKG--FKPDVKMHNIIIHGLCSSGKVEDALQLYSEM 595

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           +   C PN VT +TL++GF    + + A ++ D ++   S SS  CY
Sbjct: 596 KQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQ--SWSSSNCY 640



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 127/294 (43%), Gaps = 42/294 (14%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++ +  ++EGC   V    +I  L E A++ +EA+ +   +PE D   D++ Y  ++  
Sbjct: 345 LELWKVMEKEGCRTVVSYNILIRGLFENAKV-DEAISIWELLPEKDCCADSMTYGVLVHG 403

Query: 174 FCEKGDMIAA----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
            C+ G +  A    +E   G G +D +     Y SMI G C  GRL++  G+   M +HG
Sbjct: 404 LCKNGYLNKALSILEEAENGRGDLDTF----AYSSMINGLCREGRLDEVAGVLDQMTKHG 459

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEG------------------------- 264
           C  N    +A+++G  R   +E AL   G M  +G                         
Sbjct: 460 CKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAY 519

Query: 265 --------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
                       PN++TY+ ++   C    +  AL +  +    G  P+    + +I G 
Sbjct: 520 ALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGL 579

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           C  G +++A QL  ++     V +   +++L+    + +  + A K++  +L S
Sbjct: 580 CSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQS 633



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 6/204 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S M N  C   R+ +    +  V++   + GC  +  +   + N   +A    +A+    
Sbjct: 433 SSMINGLCREGRLDE----VAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFG 488

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M      P  + YN +I    +      A  L+K M      P++ITY  ++ G C   
Sbjct: 489 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGK 548

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L+ A  L+      G   ++  ++ ++ G+C  G +E AL+L  EM++    C PN+VT
Sbjct: 549 KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR--KCVPNLVT 606

Query: 274 YTSVIQIFCGKGMMKEALGILDRM 297
           + ++++ F      + A  I D +
Sbjct: 607 HNTLMEGFYKVRDFERASKIWDHI 630


>gi|222619024|gb|EEE55156.1| hypothetical protein OsJ_02962 [Oryza sativa Japonica Group]
          Length = 428

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 152/302 (50%), Gaps = 13/302 (4%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P T  YN +++  C     +  D+ ++    I   PD  +Y ++I G C  GRL +A  L
Sbjct: 8   PTTATYNVLVKAHCSDA-AVPIDDAVRVFRNIP-KPDACSYNTVIDGLCRRGRLPEARDL 65

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  M  +G A  +V Y+ L+  + R    + AL+L  EM + G    PNVVTY+S+I   
Sbjct: 66  FAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRG--IMPNVVTYSSLIDGL 123

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G    A+ +LDRM      PN +T S++I G C EG L +A +++D++   G     
Sbjct: 124 CKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDA 183

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV-------MIRELCLGGQVLE 394
           G +  L+V L    R  EA     +M  +G++P+ L  S+       ++  LC  G+V+ 
Sbjct: 184 GLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVR 243

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
            F +Y+ +   G +S+  +  H +L+  L +KN+  +AA + R ML +R   +    D I
Sbjct: 244 AFQVYQSMRTRG-ISTKPTTFH-LLVECLSKKNNLEKAAHVVRDMLSERCIPERETWDTI 301

Query: 455 VE 456
           V 
Sbjct: 302 VR 303



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 107/265 (40%), Gaps = 41/265 (15%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC + RL  EA  +  +M      P  + Y  +I     +     A +L   M   
Sbjct: 49  VIDGLCRRGRLP-EARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARR 107

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+++TY S+I G C  GR   A  L   M +     N + YS+++DG+C+ G + +A
Sbjct: 108 GIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQA 167

Query: 254 LELLGEMEKEG-------------GDCS--------------------PNVVTYT----- 275
           +E+L  M  +G             G C                     PN +T++     
Sbjct: 168 MEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLHGRI 227

Query: 276 --SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
             +V+   C KG +  A  +   M   G +    T   L++    + NL++A  ++  ++
Sbjct: 228 NDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAAHVVRDML 287

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLK 358
           +   +     + ++V      K+L+
Sbjct: 288 SERCIPERETWDTIVRAYWSKKKLR 312



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 10/195 (5%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+  R A+    + R + E  L P+TI Y++VI   C++G +  A E++ 
Sbjct: 114 VTYSSLIDGLCKGGRAASAVELLDRMVKERKL-PNTITYSSVIDGLCKEGCLGQAMEILD 172

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS-------ALL 241
            M L    PD   +  +I G C+AGR  +A      M   G   N + +S       A++
Sbjct: 173 RMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVV 232

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
             +C  G + RA ++   M   G    P   T+  +++    K  +++A  ++  M +  
Sbjct: 233 TALCSKGEVVRAFQVYQSMRTRGISTKP--TTFHLLVECLSKKNNLEKAAHVVRDMLSER 290

Query: 302 CAPNRVTISTLIKGF 316
           C P R T  T+++ +
Sbjct: 291 CIPERETWDTIVRAY 305



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 297 MEALGCAPNRVTISTLIKGFCVEGN--LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           M A G AP   T + L+K  C +    +D+A ++   +    + S    Y++++  L R 
Sbjct: 1   MRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPKPDACS----YNTVIDGLCRR 56

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            RL EA  LF++M+A+G  P  +  + +I  L       +   L++++ + G + +V + 
Sbjct: 57  GRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVT- 115

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            +S L+ GLC+   +  A +L   M+K+R          +++ L K G
Sbjct: 116 -YSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEG 162


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 137/256 (53%), Gaps = 2/256 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 142 AQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLIN 201

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 202 GLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 259

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++    C KG +K+A  ++D M   G  P+++T +TLI G C EG+++ A++
Sbjct: 260 SPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFE 319

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I E C
Sbjct: 320 HQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFC 379

Query: 388 LGGQVLEGFCLYEDIE 403
             G V  G  L ++++
Sbjct: 380 KKGDVWTGSKLLKEMQ 395



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 143/302 (47%), Gaps = 16/302 (5%)

Query: 76  MGIRFF--IWA----ALQSSYRHSSFMYN----RACEMSRIKQNPSIIIDVVEAYKEEGC 125
           M +++F  +W      L+  Y  S + +N    R C+   I+   S    V +A  + G 
Sbjct: 99  MKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGDIRLAQS----VFDAITKWGL 154

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
             SV     + N   +    +E   +   M    ++PD   Y+ +I   C++  M  A+E
Sbjct: 155 RPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANE 214

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L   M    L P+ +T+ ++I G C  GR++ A  ++K M     + +L+ Y+ L  G+C
Sbjct: 215 LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLC 274

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G +++A +L+ EM  +G    P+ +TYT++I   C +G M+ A     RM       +
Sbjct: 275 KKGDLKQAHDLIDEMSMKG--LKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLD 332

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  + LI G C EG   +A +++ ++++ G   + G Y+ ++ E  +   +    KL  
Sbjct: 333 DVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKKGDVWTGSKLLK 392

Query: 366 KM 367
           +M
Sbjct: 393 EM 394



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 8/216 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++    +G V + V    +I   C+  
Sbjct: 187 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----KGLVPNGVTFTTLIDGHCKNG 242

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +    C+KGD+  A +L+  M +  L PD ITY
Sbjct: 243 RV-DLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITY 301

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G +E A    K M +     + V Y+AL+ G+C+ G    A ++L EM  
Sbjct: 302 TTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLS 361

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            G    PN  TYT +I  FC KG +     +L  M+
Sbjct: 362 VG--LKPNXGTYTMIINEFCKKGDVWTGSKLLKEMQ 395



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 125/277 (45%), Gaps = 35/277 (12%)

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           G +K +   G  A+L  ++ L+   C+ G +  A  +   + K G    P+VV++ +++ 
Sbjct: 109 GFYKEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWG--LRPSVVSFNTLMN 166

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +   G + E   + + M A G  P+  T S LI G C E  +D+A +L D+++  G V 
Sbjct: 167 GYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVP 226

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +G  +++L+    +  R+  A +++ +ML+  + PD +  + +   LC  G + +   L 
Sbjct: 227 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLI 286

Query: 400 EDI-------EKIGFLS--------------------------SVDSDIHSVLLLGLCRK 426
           +++       +KI + +                           +D  +++ L+ GLC++
Sbjct: 287 DEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQE 346

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             SV+A K+ R ML   +         I+    K GD
Sbjct: 347 GRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKKGD 383


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 149/294 (50%), Gaps = 7/294 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+ +   +++D+VE    +  +V+  +  +I   C+  R+  EA  +L  +     
Sbjct: 150 CKAQRVDEAYQLLLDMVEKKSAKPDIVAWNV--IIHGFCKAGRV-REAYEMLETLVSMGC 206

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY--PDIITYVSMIKGFCNAGRLEDA 218
            P+ + Y  +I  FC+ G++  A +L K +   D +  P+++T+ ++I G C A RLE A
Sbjct: 207 VPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHA 266

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L K MK     A+   Y+ L+DG+C+ G       +  EM +EG  C+P+VVTYT+++
Sbjct: 267 FELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREG--CNPSVVTYTTLV 324

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C  G +++A  ++  M A G  P+  T + L++G    G +  A +  +K++     
Sbjct: 325 HAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCP 384

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
                YS+LV    +   + EA K + +ML   + PD   C +++  LC  G+ 
Sbjct: 385 PCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRT 438



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 174/376 (46%), Gaps = 43/376 (11%)

Query: 125 CVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCE------ 176
           C  SV  + ++ N  CE  +L ++A+ +  +M + F L P+   Y  +I+ +C+      
Sbjct: 66  CSPSVITLNILINGFCE-LQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ 124

Query: 177 -----------KGDMIAADELMKGMG-----------LIDLY------PDIITYVSMIKG 208
                        D+IA   + +G             L+D+       PDI+ +  +I G
Sbjct: 125 ARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHG 184

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           FC AGR+ +A  + + +   GC  N V Y+ L+DG C+ G++  AL+L   +        
Sbjct: 185 FCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAE 244

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           PNVVT+ ++I   C    ++ A  ++ +M+A     +  T +TL+ G C +G   E  ++
Sbjct: 245 PNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRV 304

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            ++++  G   S   Y++LV    +   L++A+++   M+A G+ PD    +V++  L  
Sbjct: 305 FEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFE 364

Query: 389 GGQVLEGFCLYEDI--EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
            G+V      +E I  E+    + V    +S L+ G C+     EA K    ML +R+  
Sbjct: 365 NGKVRTATEFFEKILRERCPPCAVV----YSALVRGCCKAALVDEAVKYYVEMLDRRLAP 420

Query: 447 QGPYVDKIVEHLKKSG 462
                  +VE L K G
Sbjct: 421 DPATCKLLVEMLCKRG 436



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 164/348 (47%), Gaps = 45/348 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  RL  EA+    +M E    P+    N ++   C+ G M  A  + +G   I
Sbjct: 9   LIAGLCKAGRLG-EAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIFRG---I 64

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------------------------- 228
              P +IT   +I GFC    L+ A  LF  M+++                         
Sbjct: 65  QCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ 124

Query: 229 ---------GCAANLVAYSALLDGICRLGSMERALELLGEM-EKEGGDCSPNVVTYTSVI 278
                     C+++++A +++  G C+   ++ A +LL +M EK+     P++V +  +I
Sbjct: 125 ARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSA--KPDIVAWNVII 182

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             FC  G ++EA  +L+ + ++GC PN VT +TLI GFC  GNL EA QL   + +    
Sbjct: 183 HGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHH 242

Query: 339 SSGG--CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
           +      +++L+  L +  RL+ A +L  +M A  ++ D    + ++  LC  G+  E  
Sbjct: 243 AEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVS 302

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            ++E++ + G   SV +  ++ L+   C+     +A ++ R M+ K I
Sbjct: 303 RVFEEMLREGCNPSVVT--YTTLVHAHCKAGSLQDAQQVIRSMVAKGI 348



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 25/252 (9%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+  T+  +I G C AGRL +A   +  M    C  NL   + LL  +C+ G M++A+ +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA-LGCAPNRVTISTLIKG 315
                  G  CSP+V+T   +I  FC   ++ +AL +   ME      P   T + +IK 
Sbjct: 61  F-----RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKC 115

Query: 316 FCVEGNLDEAYQLIDK-------VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
           +C    LD+A QL+++       V+A  SV+ G C         + +R+ EA +L   M+
Sbjct: 116 YCKMDRLDQARQLLEESSCCSSDVIAITSVARGFC---------KAQRVDEAYQLLLDMV 166

Query: 369 -ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
                KPD +A +V+I   C  G+V E + + E +  +G +   ++  ++ L+ G C+  
Sbjct: 167 EKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVP--NAVTYTTLIDGFCKSG 224

Query: 428 HSVEAAKLARFM 439
           +  EA +L + +
Sbjct: 225 NLSEALQLFKVL 236



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 3/195 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+  RL + A  ++++M   DLR DT  Y  ++   C++G       + +
Sbjct: 248 VTFNALISGLCKADRLEH-AFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFE 306

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P ++TY +++   C AG L+DA  + + M   G   ++  Y+ LL+G+   G
Sbjct: 307 EMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENG 366

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  A E   ++ +E   C P  V Y+++++  C   ++ EA+     M     AP+  T
Sbjct: 367 KVRTATEFFEKILRE--RCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPAT 424

Query: 309 ISTLIKGFCVEGNLD 323
              L++  C  G  D
Sbjct: 425 CKLLVEMLCKRGRTD 439



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/256 (19%), Positives = 93/256 (36%), Gaps = 46/256 (17%)

Query: 30  SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSS 89
           S A + +  L    ++ E  + T  A +   C  + L   F    QM  R          
Sbjct: 227 SEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKAR---------D 277

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
            R  +F Y    +    +   S +  V E    EGC                        
Sbjct: 278 LRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGC------------------------ 313

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
                       P  + Y  ++   C+ G +  A ++++ M    + PD+ TY  +++G 
Sbjct: 314 -----------NPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGL 362

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
              G++  A   F+ + R  C    V YSAL+ G C+   ++ A++   EM       +P
Sbjct: 363 FENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDR--RLAP 420

Query: 270 NVVTYTSVIQIFCGKG 285
           +  T   ++++ C +G
Sbjct: 421 DPATCKLLVEMLCKRG 436


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 153/313 (48%), Gaps = 3/313 (0%)

Query: 95  FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           F YN    + + KQ    +    EA ++ G V+ V     + +   KA  A +A+ V   
Sbjct: 302 FTYNLLIALCKSKQLEEALTLFQEA-EQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYN 360

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M +    PDT++YN +I    ++G +  A EL++ M    + PD  TY  +I    + GR
Sbjct: 361 MQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGR 420

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            E A   F +MKR   + ++V Y+ LL+G+ +L   + A +L  EM+     C P++ T+
Sbjct: 421 YEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQ--ANKCMPDLTTF 478

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            ++I      G M++AL    R+  +G APN    + LI GFC  G +D+ Y+L   ++ 
Sbjct: 479 GTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIE 538

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                    Y+ LV+   R      A +L  +M+  G  P     +V+IR L + GQV +
Sbjct: 539 CSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVED 598

Query: 395 GFCLYEDIEKIGF 407
            + L++++   GF
Sbjct: 599 AYTLFKEMIAKGF 611



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 158/340 (46%), Gaps = 8/340 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEF-DLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           +V     +  LCE  R   +AM +   M E  D  PD + YN +I  +C+ GD   A ++
Sbjct: 89  TVAFTAAMHWLCE-VRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDM 147

Query: 187 MKGMGLI-DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
            + +       P+ +++ +++   C   R  DA  +F+ M   G  A++   + L+   C
Sbjct: 148 FRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTC 207

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           RLG + +A  LL  M      C+ +  TY  ++   C  G M E    ++     GCA +
Sbjct: 208 RLGMLRQARRLLHHMTAHA--CARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALS 265

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  + +I+GF   G L EA QL +  +   SV     Y +L++ L ++K+L+EA  LF 
Sbjct: 266 AVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTY-NLLIALCKSKQLEEALTLFQ 324

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +    GV  D    S ++      G+  +   ++ +++K G +   D+ +++VL+  L +
Sbjct: 325 EAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMP--DTVVYNVLISCLGK 382

Query: 426 KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           +    EA +L   M +K I       + +++ L   G  E
Sbjct: 383 QGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYE 422



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 150/351 (42%), Gaps = 57/351 (16%)

Query: 171 IRLFCEKGDMIAADELMKGMGLID-------LYPDIITYVSMIKGFCNAGRLEDACGLFK 223
           I+ F   GD+ AA      MG++D         PD + + + +   C   R+E A  LF 
Sbjct: 60  IQAFGRAGDLDAA------MGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFD 113

Query: 224 VMKRH-GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY-------- 274
            M+    CA ++VAY+ L+ G C+ G  +RAL++   +++EG  C PN V++        
Sbjct: 114 DMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGS-CKPNAVSFDTLVIFLC 172

Query: 275 -----TSVIQIF----------------------CGKGMMKEALGILDRMEALGCAPNRV 307
                T  + +F                      C  GM+++A  +L  M A  CA +  
Sbjct: 173 KMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAF 232

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T   L+   C  G + E    ++     G   S   Y+ ++   +R  RL EA +LF   
Sbjct: 233 TYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFEST 292

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           +     PD    +++I  LC   Q+ E   L+++ E+ G +  +D   +S L+    +  
Sbjct: 293 MTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVV--LDVFTYSYLMDAFGKAG 349

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG--DE--ELITNLPKIG 474
            + +A ++   M K          + ++  L K G  DE  EL+ ++ + G
Sbjct: 350 RAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKG 400



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 155/355 (43%), Gaps = 10/355 (2%)

Query: 114 IDVVEAYKEEGCVV--SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           +D+    K+EG     +V    ++  LC+ +R A +A+ V ++M    L+ D  + N +I
Sbjct: 145 LDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSR-ATDALAVFQEMLGAGLKADVNVCNTLI 203

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
              C  G +  A  L+  M       D  TY  ++   C AG++ +     ++ +  GCA
Sbjct: 204 HCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCA 263

Query: 232 ANLVAYSALLDGICRLGSMERALELL-GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
            + V Y+ ++ G  R G +  A +L    M KE     P+V TY  +I + C    ++EA
Sbjct: 264 LSAVNYNFIIQGFIRCGRLAEATQLFESTMTKES---VPDVFTYNLLIAL-CKSKQLEEA 319

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           L +    E  G   +  T S L+  F   G   +A ++   +   G +     Y+ L+  
Sbjct: 320 LTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISC 379

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L +  ++ EA +L   M   G+ PD    +++I  L   G+  + +  +  +++     S
Sbjct: 380 LGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRK--HS 437

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            D   ++ LL GL +   + EA  L   M   +          +++ L K+G  E
Sbjct: 438 PDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRME 492



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 110/260 (42%), Gaps = 43/260 (16%)

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRL------------------------------ 247
           A   +K + + G   +    +A++  +C+L                              
Sbjct: 2   ALATYKHLLKAGLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQ 61

Query: 248 -----GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM-EALG 301
                G ++ A+ +L +M + G  C P+ V +T+ +   C    +++A+ + D M E   
Sbjct: 62  AFGRAGDLDAAMGMLDDM-RRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCD 120

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG-CYSSLVVELVRTKRLKEA 360
           CAP+ V  +TLI G+C  G+ D A  +  ++   GS       + +LV+ L +  R  +A
Sbjct: 121 CAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDA 180

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             +F +ML +G+K D   C+ +I   C  G + +   L   +       + D+  + +L+
Sbjct: 181 LAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHM--TAHACARDAFTYGILV 238

Query: 421 LGLCRKNHSVEAA---KLAR 437
              CR     E A   +LAR
Sbjct: 239 NAHCRAGQMHEVASFMELAR 258



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   ++ ++   + + M E    PD+I Y  ++  F  +G    A EL++ M   
Sbjct: 516 LISGFCRSGQV-DKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVRE 574

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
              P + TY  +I+    AG++EDA  LFK M   G   ++  YSAL
Sbjct: 575 GHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 621


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 150/304 (49%), Gaps = 18/304 (5%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R + +A  +L++M E  + PD + YN +I  F ++G    A+EL   M   
Sbjct: 296 MIVGFCSSGRWS-DAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 354

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ ITY SMI GFC   RL+ A  +F +M   GC+ NL+ ++ L+DG C    ++  
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +ELL EM + G     +  TY ++I  F   G +  AL +L  M + G  P+ VT  TL+
Sbjct: 415 MELLHEMTETG--LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 314 KGFCVEGNLDEAYQLIDKVVA------------GGSVSSGGCYSSLVVELVRTKRLKEAE 361
            G C  G L +A ++  KV+              G       Y+ L+  L+   +  EAE
Sbjct: 473 DGLCDNGKLKDALEMF-KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +L+ +M   G+ PD +  S MI  LC   ++ E   +++ +    F  +V +   + L+ 
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVT--FTTLIN 589

Query: 422 GLCR 425
           G C+
Sbjct: 590 GYCK 593



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 143/278 (51%), Gaps = 17/278 (6%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  ++     + +    A+  ++ M +L +M E  L  DT  YN +I  F   GD+ A
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNA 448

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCA 231
           A +L++ M    L PDI+T  +++ G C+ G+L+DA  +FKVM++           +G  
Sbjct: 449 ALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVE 508

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            ++  Y+ L+ G+   G    A EL  EM   G    P+ +TY+S+I   C +  + EA 
Sbjct: 509 PDVQTYNILISGLINEGKFLEAEELYEEMPHRG--IVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            + D M +   +PN VT +TLI G+C  G +D+  +L  ++   G V++   Y +L+   
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            +   +  A  +F +M++SGV PD    ++ IR +  G
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPD----TITIRNMLTG 660



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 120/240 (50%), Gaps = 1/240 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+    K+ +  L PD + +N ++   C +  +  A  L   M      P+++T+ +++ 
Sbjct: 133 ALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  GR+ +A  L   M   G     + Y  ++DG+C++G    AL+LL +ME E    
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKME-EISHI 251

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PNVV Y+++I   C  G   +A  +   M+  G  P+  T +++I GFC  G   +A Q
Sbjct: 252 IPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQ 311

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ +++          Y++L+   V+  +  EAE+L+ +ML  G+ P+ +  S MI   C
Sbjct: 312 LLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFC 371



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 147/298 (49%), Gaps = 7/298 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC + R++ EA+ +  +M E   RP+ + +  ++   C +G ++ A  L+ 
Sbjct: 150 VTFNTLLHGLCVEDRVS-EALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLD 208

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRL 247
            M    L P  ITY +++ G C  G    A  L + M+       N+V YSA++D +C+ 
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKD 268

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    A  L  EM+++G    P++ TY S+I  FC  G   +A  +L  M     +P+ V
Sbjct: 269 GRHSDAQNLFTEMQEKG--IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + LI  F  EG   EA +L D+++  G + +   YSS++    +  RL  AE +F  M
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLG 422
              G  P+ +  + +I   C   ++ +G  L  ++ + G +   ++ ++ IH   L+G
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 138 LCEKARLAN--EAMWVLRK--------MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           LC+  +L +  E   V++K         P   + PD   YN +I     +G  + A+EL 
Sbjct: 475 LCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 534

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M    + PD ITY SMI G C   RL++A  +F  M     + N+V ++ L++G C+ 
Sbjct: 535 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 594

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ++  LEL  EM + G     N +TY ++I  F   G +  AL I   M + G  P+ +
Sbjct: 595 GRVDDGLELFCEMGRRG--IVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI 652

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
           TI  ++ G   +  L  A  +++K+     +S GG
Sbjct: 653 TIRNMLTGLWSKEELKRAVAMLEKLQMSMDLSFGG 687



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 102/240 (42%), Gaps = 9/240 (3%)

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L  G   +  +E A++L  +M +      P+VV +  ++ +          + +  +ME 
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRP--LPSVVDFCKLMGVVVRMERPDLVISLYQKMER 107

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
                +  + + LIK FC    L  A     K+   G       +++L+  L    R+ E
Sbjct: 108 KQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSE 167

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A  LF +M  +  +P+ +  + ++  LC  G+++E   L + + + G   +  +  +  +
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQIT--YGTI 225

Query: 420 LLGLCRKNHSVEAAKLARFM-----LKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
           + G+C+   +V A  L R M     +   + +    +D + +  + S  + L T + + G
Sbjct: 226 VDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 149/294 (50%), Gaps = 7/294 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+ +   +++D+VE    +  +V+  +  +I   C+  R+  EA  +L  +     
Sbjct: 150 CKAQRVDEAYQLLLDMVEKKSAKPDIVAWNV--IIHGFCKAGRV-REAYEMLETLVSMGC 206

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY--PDIITYVSMIKGFCNAGRLEDA 218
            P+ + Y  +I  FC+ G++  A +L K +   D +  P+++T+ ++I G C A RLE A
Sbjct: 207 VPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHA 266

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L K MK     A+   Y+ L+DG+C+ G       +  EM +EG  C+P+VVTYT+++
Sbjct: 267 FELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREG--CNPSVVTYTTLV 324

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C  G +++A  ++  M A G  P+  T + L++G    G +  A +  +K++     
Sbjct: 325 HAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCP 384

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
                YS+LV    +   + EA K + +ML   + PD   C +++  LC  G+ 
Sbjct: 385 PCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRT 438



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 174/376 (46%), Gaps = 43/376 (11%)

Query: 125 CVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCE------ 176
           C  SV  + ++ N  CE  +L ++A+ +  +M + F L P+   Y  +I+ +C+      
Sbjct: 66  CSPSVITLNILINGFCE-LQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ 124

Query: 177 -----------KGDMIAADELMKGMG-----------LIDLY------PDIITYVSMIKG 208
                        D+IA   + +G             L+D+       PDI+ +  +I G
Sbjct: 125 ARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHG 184

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           FC AGR+ +A  + + +   GC  N V Y+ L+DG C+ G++  AL+L   +        
Sbjct: 185 FCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAE 244

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           PNVVT+ ++I   C    ++ A  ++ +M+A     +  T +TL+ G C +G   E  ++
Sbjct: 245 PNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRV 304

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            ++++  G   S   Y++LV    +   L++A+++   M+A G+ PD    +V++  L  
Sbjct: 305 FEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFE 364

Query: 389 GGQVLEGFCLYEDI--EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
            G+V      +E I  E+    + V    +S L+ G C+     EA K    ML +R+  
Sbjct: 365 NGKVRTATEFFEKILRERCPPCAVV----YSALVRGCCKAALVDEAVKYYVEMLDRRLAP 420

Query: 447 QGPYVDKIVEHLKKSG 462
                  +VE L K G
Sbjct: 421 DPATCKLLVEMLCKRG 436



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 164/348 (47%), Gaps = 45/348 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  RL  EA+    +M E    P+    N ++   C+ G M  A  + +G   I
Sbjct: 9   LIAGLCKAGRLG-EAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIFRG---I 64

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------------------------- 228
              P +IT   +I GFC    L+ A  LF  M+++                         
Sbjct: 65  QCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ 124

Query: 229 ---------GCAANLVAYSALLDGICRLGSMERALELLGEM-EKEGGDCSPNVVTYTSVI 278
                     C+++++A +++  G C+   ++ A +LL +M EK+     P++V +  +I
Sbjct: 125 ARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSA--KPDIVAWNVII 182

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             FC  G ++EA  +L+ + ++GC PN VT +TLI GFC  GNL EA QL   + +    
Sbjct: 183 HGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHH 242

Query: 339 SSGG--CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
           +      +++L+  L +  RL+ A +L  +M A  ++ D    + ++  LC  G+  E  
Sbjct: 243 AEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVS 302

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            ++E++ + G   SV +  ++ L+   C+     +A ++ R M+ K I
Sbjct: 303 RVFEEMLREGCNPSVVT--YTTLVHAHCKAGSLQDAQQVIRSMVAKGI 348



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 125/252 (49%), Gaps = 25/252 (9%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+  T+  +I G C AGRL +A   +  M    C  NL   + LL  +C+ G+M++A+ +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA-LGCAPNRVTISTLIKG 315
                  G  CSP+V+T   +I  FC   ++ +AL +   ME      P   T + +IK 
Sbjct: 61  F-----RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKC 115

Query: 316 FCVEGNLDEAYQLIDK-------VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
           +C    LD+A QL+++       V+A  SV+ G C         + +R+ EA +L   M+
Sbjct: 116 YCKMDRLDQARQLLEESSCCSSDVIAITSVARGFC---------KAQRVDEAYQLLLDMV 166

Query: 369 -ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
                KPD +A +V+I   C  G+V E + + E +  +G +   ++  ++ L+ G C+  
Sbjct: 167 EKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVP--NAVTYTTLIDGFCKSG 224

Query: 428 HSVEAAKLARFM 439
           +  EA +L + +
Sbjct: 225 NLSEALQLFKVL 236



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 3/195 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC+  RL + A  ++++M   DLR DT  Y  ++   C++G       + +
Sbjct: 248 VTFNALISGLCKADRLEH-AFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFE 306

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P ++TY +++   C AG L+DA  + + M   G   ++  Y+ LL+G+   G
Sbjct: 307 EMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENG 366

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  A E   ++ +E   C P  V Y+++++  C   ++ EA+     M     AP+  T
Sbjct: 367 KVRTATEFFEKILRE--RCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPAT 424

Query: 309 ISTLIKGFCVEGNLD 323
              L++  C  G  D
Sbjct: 425 CKLLVEMLCKRGRTD 439



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/256 (19%), Positives = 93/256 (36%), Gaps = 46/256 (17%)

Query: 30  SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSS 89
           S A + +  L    ++ E  + T  A +   C  + L   F    QM  R          
Sbjct: 227 SEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKAR---------D 277

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
            R  +F Y    +    +   S +  V E    EGC                        
Sbjct: 278 LRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGC------------------------ 313

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
                       P  + Y  ++   C+ G +  A ++++ M    + PD+ TY  +++G 
Sbjct: 314 -----------NPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGL 362

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
              G++  A   F+ + R  C    V YSAL+ G C+   ++ A++   EM       +P
Sbjct: 363 FENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDR--RLAP 420

Query: 270 NVVTYTSVIQIFCGKG 285
           +  T   ++++ C +G
Sbjct: 421 DPATCKLLVEMLCKRG 436


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 168/343 (48%), Gaps = 11/343 (3%)

Query: 138 LCEKARLANEAMWVLRKMPE--FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
           LC++ R + EA+ +L  M +   D  PD + Y+ VI  F ++GD+         M    +
Sbjct: 61  LCDENR-SQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRI 119

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            P+++TY S+I   C A  ++ A  +   M + G   + + Y++++ G C  G  + A+ 
Sbjct: 120 SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV 179

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
            L +M  +G    P+VVTY S++   C  G   EA  I D M   G  P   T  TL++G
Sbjct: 180 FLKKMRSDG--VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQG 237

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +  +G L E + L+D +V  G   +   +S LV    + ++++EA  +FSKM   G+ P+
Sbjct: 238 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPN 297

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +    +I  LC  G+V +    +E +   G   S  + +++ L+ GLC  N    A +L
Sbjct: 298 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL--SPGNIVYNSLIHGLCTCNKWERAEEL 355

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSG----DEELITNLPKIG 474
              ML + I L   + + I++   K G     E+L   + +IG
Sbjct: 356 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 398



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 154/306 (50%), Gaps = 5/306 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C   +   EA+  L+KM    + PD + YN+++   C+ G    A ++   M   
Sbjct: 164 IVHGFCSSGQ-PKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKR 222

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+I TY ++++G+   G L +  GL  +M R+G   N   +S L+    +   +E A
Sbjct: 223 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEA 282

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +  +M ++G   +PN VTY +VI I C  G +++A+   ++M   G +P  +  ++LI
Sbjct: 283 MLVFSKMRQQG--LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 340

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C     + A +LI +++  G   +   ++S++    +  R+ E+EKLF  M+  GVK
Sbjct: 341 HGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 400

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  S +I   CL G++ E   L   +  +G     D   +S L+ G C+ +   +A 
Sbjct: 401 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM--KPDCVTYSTLINGYCKISRMKDAL 458

Query: 434 KLARFM 439
            L R M
Sbjct: 459 VLFREM 464



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 3/229 (1%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           EDA  +F  + R G   ++ +Y+ LL+G+C     + ALELL  M  +GGDC P+VV+Y+
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           +VI  F  +G + +     + M     +PN VT +++I   C    +D+A +++  +V  
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 152

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G +     Y+S+V     + + KEA     KM + GV+PD +  + ++  LC  G+  E 
Sbjct: 153 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEA 212

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             +++ + K G    + +  +  LL G   K   VE   L   M++  I
Sbjct: 213 RKIFDSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGI 259



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 144/310 (46%), Gaps = 4/310 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           +TI +N++I   C++G +I +++L   M  I + PDIITY ++I G+C AG++++A  L 
Sbjct: 367 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 426

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   + V YS L++G C++  M+ AL L  EME  G   SP+++TY  ++Q   
Sbjct: 427 ASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSG--VSPDIITYNIILQGLF 484

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
                  A  +   +   G      T + ++ G C     D+A ++   +          
Sbjct: 485 QTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEAR 544

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            ++ ++  L++  R  EA+ LF    ++G+ P+     +M   +   G + E   L+  +
Sbjct: 545 TFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSM 604

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           E  G   +VDS + + ++  L ++     A      + +K   L+       ++ L    
Sbjct: 605 EDNG--CTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGK 662

Query: 463 DEELITNLPK 472
            +E    LP+
Sbjct: 663 YQEYHRFLPE 672


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 174/376 (46%), Gaps = 41/376 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R  +EA  +  +M    + PD I Y+ +I  FC  G    +  L   M   
Sbjct: 243 IIDGLCKVGR-EDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQ 301

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD++T+  +I   C  G++ +A  L +VM + G   NL+ Y++L+DG C +G +  A
Sbjct: 302 GVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSA 361

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL   M  +G    P+ ++YT++I  +C    +KEA+ + + M  +G +PN  T  TL+
Sbjct: 362 RELFLSMPSKG--LEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLL 419

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSS---------GGC--------------------- 343
           KG   +G + +A +L   +   G  ++         G C                     
Sbjct: 420 KGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFK 479

Query: 344 -----YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                YS L+  L +  +L+ A +LF K+   G++PD +  ++MI   C  GQV     L
Sbjct: 480 LNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANIL 539

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
           +E +E+ G   + D   ++ LL G C  N   E  KL   M++K +         +V+ L
Sbjct: 540 FEKMEENG--CTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDML 597

Query: 459 -KKSGDEELITNLPKI 473
            K    ++ +  LPK 
Sbjct: 598 CKDEKYKKFVDLLPKF 613



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 151/322 (46%), Gaps = 19/322 (5%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G +  +     +F+L  + RLA              L PD    + +    C    +  A
Sbjct: 99  GGLAKINHYSQLFSLYNEMRLAG-------------LSPDLFTLSILANCLCNVNRVSEA 145

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
              M G+      P+++TY ++IKG C   R+ +A  LF  M++ GC  N V Y  L+ G
Sbjct: 146 LAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKG 205

Query: 244 ICRLGSMERAL----ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           +C+ G++  AL    E+L +  + G +C P V+TY+ +I   C  G   EA  + + M+A
Sbjct: 206 LCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKA 265

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  P+ ++ STLI GFC  G  D++  L D++V  G       +S L+  L +  ++ E
Sbjct: 266 QGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTE 325

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A+KL   M+  G+ P+ +  + +I   C+ G +     L+  +   G     D   ++ L
Sbjct: 326 AKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGL--EPDEISYTTL 383

Query: 420 LLGLCRKNHSVEAAKLARFMLK 441
           + G C+     EA  L   ML+
Sbjct: 384 INGYCKTWKVKEAMNLYNEMLQ 405



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 155/308 (50%), Gaps = 11/308 (3%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R++ EA+  +  +      P+ + Y  +I+  C +  +  A  L   M  +   P
Sbjct: 136 LCNVNRVS-EALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTP 194

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVM----KRHG--CAANLVAYSALLDGICRLGSME 251
           + +TY ++IKG C  G +  A  L K M     ++G  C   ++ YS ++DG+C++G  +
Sbjct: 195 NAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRED 254

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
            A EL  EM+ +G    P+V++Y+++I  FC  G   ++  + D M   G  P+ VT S 
Sbjct: 255 EAKELFEEMKAQG--MIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSV 312

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           LI   C EG + EA +L++ ++  G V +   Y+SL+        L  A +LF  M + G
Sbjct: 313 LIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKG 372

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           ++PD ++ + +I   C   +V E   LY ++ ++G   S +   +  LL GL +K    +
Sbjct: 373 LEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVG--KSPNVTTYGTLLKGLFQKGKVGD 430

Query: 432 AAKLARFM 439
           A KL   M
Sbjct: 431 AKKLFGVM 438



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 138/265 (52%), Gaps = 4/265 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P  I Y+ +I   C+ G    A EL + M    + PD+I+Y ++I GFC AG+ + +  
Sbjct: 234 KPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKH 293

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M   G   ++V +S L+D +C+ G +  A +LL  M + G    PN++TY S+I  
Sbjct: 294 LFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRG--IVPNLITYNSLIDG 351

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC  G +  A  +   M + G  P+ ++ +TLI G+C    + EA  L ++++  G   +
Sbjct: 352 FCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPN 411

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y +L+  L +  ++ +A+KLF  M   GV  +     + +  LC    + E   L+ 
Sbjct: 412 VTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFN 471

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCR 425
           +++   F  ++++  +S L+ GLC+
Sbjct: 472 ELKSYNFKLNIEN--YSCLIDGLCK 494



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 317 CVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           C  GN+   +A+   D ++    +     ++ L+  L +     +   L+++M  +G+ P
Sbjct: 65  CKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSP 124

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D    S++   LC   +V E       I + G++ +V +  ++ L+ GLC ++   EA +
Sbjct: 125 DLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVT--YTTLIKGLCMEHRISEATR 182

Query: 435 LARFMLK 441
           L   M K
Sbjct: 183 LFLRMQK 189


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 193/448 (43%), Gaps = 86/448 (19%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C + R+ +  S++      ++++G V+ V+    +     +A+   +   + RKM
Sbjct: 272 LLNGFCMLDRVDEAFSLL----RLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKM 327

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            E +++PD  +Y  +++   E G +  A EL+  M    + PD + Y  +IKGFC+ G L
Sbjct: 328 IEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLL 387

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
            +A  L   + RH C  N+  YS L+ G+CR G    A E+  EMEK G  C P+ VT+ 
Sbjct: 388 SEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLG--CYPSAVTFN 445

Query: 276 SVI------------------------------------------------QIFCGKGMM 287
           S+I                                                +  C  G++
Sbjct: 446 SLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLI 505

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            +A  IL ++   G AP   T + L+ GFC  GN + AY+L  ++   G       Y +L
Sbjct: 506 HKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTL 565

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY-------- 399
           +  L+R +R ++A K+F +M  +G  PD      M+  +C   ++   F L+        
Sbjct: 566 INGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIR 625

Query: 400 ----------------EDIEK-------IGF-LSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
                           +++EK       + F L+  D   +++ L+GLC+     EA K+
Sbjct: 626 SQEDEAIKAIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKI 685

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
              + + ++ +  P   K++  L K GD
Sbjct: 686 FLILEEYKVVITPPCCVKLIYFLLKEGD 713



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 115/234 (49%), Gaps = 4/234 (1%)

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N   LE  C   + +K  G   +  A+  L+    ++G  ++A+E  G M     DC+P+
Sbjct: 103 NQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRD--FDCTPD 160

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           V TY  ++ +   K  +  AL +  RM  L C PN  T S LI G C  GN+ +A  L D
Sbjct: 161 VYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFD 220

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G +     Y  ++  L R+KR+ +A +LF KM  SGV PD + C+ ++   C+  
Sbjct: 221 EMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLD 280

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +V E F L    EK G++  V    +S L+ GL R     +   L R M++  +
Sbjct: 281 RVDEAFSLLRLFEKDGYVLDVRG--YSCLIRGLFRAKRYEDVQLLYRKMIEDNV 332



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 194/460 (42%), Gaps = 77/460 (16%)

Query: 41  KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRA 100
           K  N +E  L  +   L    V  ++    P   Q+G RFFIWA        S+F   RA
Sbjct: 41  KTMNPMEPALEPMVPFLSPKIVTSIIQN--PPNPQLGFRFFIWA--------SNFKRFRA 90

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
            E      +  +I D++    + G  +  + ++ + N     ++ N+A +VL        
Sbjct: 91  WE------SCDLITDLL--INQNGLELYCQTLEALKN--GGIKVHNDAFFVL-------- 132

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
                     I+++ + G    A E    M   D  PD+ TY  ++        L  A  
Sbjct: 133 ----------IKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALT 182

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           ++  M +  C  N+  +S L+DG+C+ G+++ AL L  EM + G    P+  TY  VI  
Sbjct: 183 VYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRG--ILPDAFTYCVVISG 240

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C    + +A  + D+M+  G  P+ VT + L+ GFC+   +DEA+ L+      G V  
Sbjct: 241 LCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLD 300

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLA------------------------------- 369
              YS L+  L R KR ++ + L+ KM+                                
Sbjct: 301 VRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLN 360

Query: 370 ----SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
               SGV PD +  +V+I+  C  G + E   L  +I +     +V +  +S+L+ G+CR
Sbjct: 361 EMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKT--YSILISGMCR 418

Query: 426 KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
              + +A ++   M K   +      + +++ L K+G  E
Sbjct: 419 NGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLE 458


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 150/304 (49%), Gaps = 18/304 (5%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R + +A  +L++M E  + PD + YN +I  F ++G    A+EL   M   
Sbjct: 296 MIVGFCSSGRWS-DAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 354

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ ITY SMI GFC   RL+ A  +F +M   GC+ NL+ ++ L+DG C    ++  
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +ELL EM + G     +  TY ++I  F   G +  AL +L  M + G  P+ VT  TL+
Sbjct: 415 MELLHEMTETG--LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLL 472

Query: 314 KGFCVEGNLDEAYQLIDKVVA------------GGSVSSGGCYSSLVVELVRTKRLKEAE 361
            G C  G L +A ++  KV+              G       Y+ L+  L+   +  EAE
Sbjct: 473 DGLCDNGKLKDALEMF-KVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +L+ +M   G+ PD +  S MI  LC   ++ E   +++ +    F  +V +   + L+ 
Sbjct: 532 ELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVT--FTTLIN 589

Query: 422 GLCR 425
           G C+
Sbjct: 590 GYCK 593



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 143/278 (51%), Gaps = 17/278 (6%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  ++     + +    A+  ++ M +L +M E  L  DT  YN +I  F   GD+ A
Sbjct: 389 KGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNA 448

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCA 231
           A +L++ M    L PDI+T  +++ G C+ G+L+DA  +FKVM++           +G  
Sbjct: 449 ALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVE 508

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            ++  Y+ L+ G+   G    A EL  EM   G    P+ +TY+S+I   C +  + EA 
Sbjct: 509 PDVQTYNILISGLINEGKFLEAEELYEEMPHRG--IVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            + D M +   +PN VT +TLI G+C  G +D+  +L  ++   G V++   Y +L+   
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            +   +  A  +F +M++SGV PD    ++ IR +  G
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPD----TITIRNMLTG 660



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 147/298 (49%), Gaps = 7/298 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC + R++ EA+ +  +M E   RP+ + +  ++   C +G ++ A  L+ 
Sbjct: 150 VTFNTLLHGLCVEDRVS-EALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLD 208

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRL 247
            M    L P  ITY +++ G C  G    A  L + M+       N+V YSA++D +C+ 
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    A  L  EM+++G    P++ TY S+I  FC  G   +A  +L  M     +P+ V
Sbjct: 269 GRHSDAQNLFTEMQEKG--IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + LI  F  EG   EA +L D+++  G + +   YSS++    +  RL  AE +F  M
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLG 422
              G  P+ +  + +I   C   ++ +G  L  ++ + G +   ++ ++ IH   L+G
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 140/291 (48%), Gaps = 5/291 (1%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           +KM    +R D   +  +I+ FC    +  A      +  + L+PD++T+ +++ G C  
Sbjct: 103 QKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVE 162

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            R+ +A  LF  M    C  N+V ++ L++G+CR G +  A+ LL  M ++G    P  +
Sbjct: 163 DRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG--LQPTQI 220

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           TY +++   C KG    AL +L +ME +    PN V  S +I   C +G   +A  L  +
Sbjct: 221 TYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +   G       Y+S++V    + R  +AE+L  +ML   + PD +  + +I      G+
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             E   LY+++   G + +  +  +S ++ G C++N    A  +   M  K
Sbjct: 341 FFEAEELYDEMLPRGIIPNTIT--YSSMIDGFCKQNRLDAAEHMFYLMATK 389



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 138 LCEKARLAN--EAMWVLRK--------MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           LC+  +L +  E   V++K         P   + PD   YN +I     +G  + A+EL 
Sbjct: 475 LCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 534

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M    + PD ITY SMI G C   RL++A  +F  M     + N+V ++ L++G C+ 
Sbjct: 535 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 594

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ++  LEL  EM + G     N +TY ++I  F   G +  AL I   M + G  P+ +
Sbjct: 595 GRVDDGLELFCEMGRRG--IVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTI 652

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
           TI  ++ G   +  L  A  +++K+     +S GG
Sbjct: 653 TIRNMLTGLWSKEELKRAVAMLEKLQMSMDLSFGG 687



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 113/238 (47%), Gaps = 3/238 (1%)

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF     LEDA  LF  M R     ++V +  L+  + R+   +  + L  +ME++   C
Sbjct: 53  GFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRC 112

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             ++ ++T +I+ FC    +  AL    ++  LG  P+ VT +TL+ G CVE  + EA  
Sbjct: 113 --DIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALN 170

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  ++       +   +++L+  L R  R+ EA  L  +M+  G++P  +    ++  +C
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
             G  +    L   +E++  +   +  I+S ++  LC+     +A  L   M +K I+
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIP-NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 165/342 (48%), Gaps = 17/342 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +I   C   R + EA  +L++M E   + PD + YN +I  F ++G    A+EL   M  
Sbjct: 261 MINGFCSSGRWS-EAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP 319

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             + P  ITY SMI GFC   RL+ A  +F +M   GC+ +++ ++ L+ G CR   ++ 
Sbjct: 320 RGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDD 379

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
            ++LL EM + G     N +TYT++I  FC  G +  A  +L  M + G  PN VT +TL
Sbjct: 380 GIKLLHEMTEAG--LVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTL 437

Query: 313 IKGFCVEGNLDEAYQLI-----DKVVAGGSVSSGG------CYSSLVVELVRTKRLKEAE 361
           + G C  G L +A ++       K+    S    G       Y+ L+  L+   +  EAE
Sbjct: 438 LDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 497

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +L+ +M   G+ PD +  + +I  LC   ++ E   +++ +    F  +V +   + L+ 
Sbjct: 498 ELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVT--FTTLIN 555

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           G C+     +  +L   M ++ I         ++   +K G+
Sbjct: 556 GYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGN 597



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 142/274 (51%), Gaps = 13/274 (4%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +A+  ++ + +L +M E  L  +TI Y  +I  FC+ GD+ AA +L++ M    + P+++
Sbjct: 373 RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVV 432

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCAANLVAYSALLDGICRLGS 249
           T  +++ G C+ G+L+DA  +FK M++           +G   ++  Y+ L+ G+   G 
Sbjct: 433 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGK 492

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
              A EL  EM   G    P+ +TY SVI   C +  + EA  + D M +   +PN VT 
Sbjct: 493 FLEAEELYEEMPHRG--IVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 550

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           +TLI G+C  G +D+  +L  ++   G V++   Y +L+    +   +  A  +F +M+A
Sbjct: 551 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMA 610

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           SGV PD +    M+  L    ++     + ED++
Sbjct: 611 SGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQ 644



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 171/381 (44%), Gaps = 22/381 (5%)

Query: 42  NPNNIE-KTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRA 100
            PN I   T+     K+  T     L R     S +     IW          + M N  
Sbjct: 211 QPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWP-----LERRTCMINGF 265

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   R  +   ++ +++E  K    VV+      + N   K     EA  +  +M    +
Sbjct: 266 CSSGRWSEAQQLLQEMLERKKISPDVVTYN---ALINAFVKEGKFFEAEELYDEMLPRGI 322

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P TI Y+++I  FC++  + AA+ +   M      PDIIT+ ++I G+C A R++D   
Sbjct: 323 IPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIK 382

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M   G  AN + Y+ L+ G C++G +  A +LL EM   G    PNVVT  +++  
Sbjct: 383 LLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSG--VCPNVVTCNTLLDG 440

Query: 281 FCGKGMMKEALGILDRMEAL-----------GCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
            C  G +K+AL +   M+             G  P+  T + LI G   EG   EA +L 
Sbjct: 441 LCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 500

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           +++   G V     Y+S++  L +  RL EA ++F  M +    P+ +  + +I   C  
Sbjct: 501 EEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 560

Query: 390 GQVLEGFCLYEDIEKIGFLSS 410
           G+V +G  L+ ++ + G +++
Sbjct: 561 GRVDDGLELFCEMGRRGIVAN 581



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 171/367 (46%), Gaps = 58/367 (15%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC + R++ EA+ +  +M     +P+ + +  ++   C +G ++ A  L+ 
Sbjct: 149 VTFSTLLHGLCVEDRIS-EALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLD 203

Query: 189 GMGLIDLYPDIITYVSM-----------------------------------------IK 207
            M    L P+ ITY ++                                         I 
Sbjct: 204 RMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMIN 263

Query: 208 GFCNAGRLEDACGLFKVM-KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           GFC++GR  +A  L + M +R   + ++V Y+AL++   + G    A EL  EM   G  
Sbjct: 264 GFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG-- 321

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+ +TY+S+I  FC +  +  A  +   M   GC+P+ +T +TLI G+C    +D+  
Sbjct: 322 IIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGI 381

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+ ++   G V++   Y++L+    +   L  A+ L  +M++SGV P+ + C+ ++  L
Sbjct: 382 KLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGL 441

Query: 387 CLGGQVLEGFCLYE-------DIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLAR 437
           C  G++ +   +++       DI+     + V+ D+  +++L+ GL  +   +EA +L  
Sbjct: 442 CDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE 501

Query: 438 FMLKKRI 444
            M  + I
Sbjct: 502 EMPHRGI 508



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 157/345 (45%), Gaps = 32/345 (9%)

Query: 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR 161
           +M R +  PS+I    +  K  G VV +  + V+ +L  K  +        R++P     
Sbjct: 68  DMVRSRPLPSVI----DFCKLMGVVVRMGRLDVVISLHRKMEM--------RRVP----- 110

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
            +   +  +++ FC    +  A      +  +  +P ++T+ +++ G C   R+ +A  L
Sbjct: 111 CNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDL 170

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  M    C  N+V ++ L++G+CR G +  A+ LL  M ++G    PN +TY +++   
Sbjct: 171 FHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDG--LQPNQITYGTIVDGM 224

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTI------STLIKGFCVEGNLDEAYQLIDKVVAG 335
           C  G    AL +L +ME +      V I      + +I GFC  G   EA QL+ +++  
Sbjct: 225 CKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLER 284

Query: 336 GSVSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
             +S     Y++L+   V+  +  EAE+L+ +ML  G+ P  +  S MI   C   ++  
Sbjct: 285 KKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDA 344

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
              ++  +   G   S D    + L+ G CR     +  KL   M
Sbjct: 345 AEHMFYLMATKG--CSPDIITFNTLIAGYCRAKRVDDGIKLLHEM 387



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 132/288 (45%), Gaps = 15/288 (5%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  I +  ++ +    G +     L + M +  +  +  ++  ++K FC+  +L  A   
Sbjct: 76  PSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALST 135

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  + + G    +V +S LL G+C    +  AL+L  +M      C PNVVT+T+++   
Sbjct: 136 FGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM------CKPNVVTFTTLMNGL 189

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C +G + EA+ +LDRM   G  PN++T  T++ G C  G+   A  L+ K+     +   
Sbjct: 190 CREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPN 249

Query: 342 GCY------SSLVVELVRTKRLKEAEKLFSKMLA-SGVKPDGLACSVMIRELCLGGQVLE 394
                    + ++     + R  EA++L  +ML    + PD +  + +I      G+  E
Sbjct: 250 VVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFE 309

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              LY+++   G + S  +  +S ++ G C++N    A  +   M  K
Sbjct: 310 AEELYDEMLPRGIIPSTIT--YSSMIDGFCKQNRLDAAEHMFYLMATK 355



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 6/200 (3%)

Query: 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEF 158
           A EM +  Q   + ID    +   G    V+   ++ + L  + +   EA  +  +MP  
Sbjct: 450 ALEMFKAMQKSKMDIDASHPFN--GVEPDVQTYNILISGLINEGKFL-EAEELYEEMPHR 506

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            + PDTI YN+VI   C++  +  A ++   MG     P+++T+ ++I G+C AGR++D 
Sbjct: 507 GIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 566

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             LF  M R G  AN + Y  L+ G  ++G++  AL++  EM   G    P+ +T  +++
Sbjct: 567 LELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASG--VYPDTITIRNML 624

Query: 279 QIFCGKGMMKEALGILDRME 298
                K  +K A+ +L+ ++
Sbjct: 625 TGLWSKEELKRAVAMLEDLQ 644



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 16/243 (6%)

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF     LEDA  LF  M R     +++ +  L+  + R+G ++  + L  +ME     C
Sbjct: 52  GFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPC 111

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             N  ++T +++ FC    +  AL    ++  LG  P  VT STL+ G CVE  + EA  
Sbjct: 112 --NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALD 169

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  ++     V+    +++L+  L R  R+ EA  L  +ML  G++P+ +    ++  +C
Sbjct: 170 LFHQMCKPNVVT----FTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMC 225

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDI-------HSVLLLGLCRKNHSVEAAKLARFML 440
             G  +    L   +E++   S +  ++        + ++ G C      EA +L + ML
Sbjct: 226 KMGDTVSALNLLRKMEEV---SHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEML 282

Query: 441 KKR 443
           +++
Sbjct: 283 ERK 285



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 1/138 (0%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++    VI  LC+++RL +EA  +   M      P+ + +  +I  +C+ G +    EL 
Sbjct: 512 TITYNSVIHGLCKQSRL-DEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF 570

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             MG   +  + ITY+++I GF   G +  A  +F+ M   G   + +    +L G+   
Sbjct: 571 CEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSK 630

Query: 248 GSMERALELLGEMEKEGG 265
             ++RA+ +L +++   G
Sbjct: 631 EELKRAVAMLEDLQMSVG 648


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 175/355 (49%), Gaps = 7/355 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           + G  ++V +  ++ N  C++  +  +A  V  ++ +  LRP  + +N +I  +C+ G++
Sbjct: 233 DAGFPLNVYVFNILMNKFCKEGNIC-DAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNL 291

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
                L   M      PD+ TY ++I   C   +++ A  LF  M   G   N V ++ L
Sbjct: 292 DVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTL 351

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G  R G ++   E   +M  +G    P++V Y +++  FC  G +  A  I+D M   
Sbjct: 352 IHGHSRNGQIDLMKESYQKMLSKG--LQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRR 409

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P++VT +TLI GFC  G++D A ++  ++   G       +S+L+  + +  R+ +A
Sbjct: 410 GLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDA 469

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           E+   +ML +G+KPD +  ++M+   C  G    GF L ++++  G + +V +  ++VLL
Sbjct: 470 ERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVT--YNVLL 527

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE-HLKKSGDEELITNLPKIG 474
            GLC+      A  L   ML   +       + ++E H + +   +     P+IG
Sbjct: 528 NGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHANASKHYKQKPEIG 582



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 23/272 (8%)

Query: 133 KVIFNLCEKARLANEAMWV------------------LRKMPEFDLRPDTIIYNNVIRLF 174
           ++ + +CE+  + N+ ++                    +KM    L+PD ++YN ++  F
Sbjct: 331 RLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGF 390

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ GD++AA  ++ GM    L PD +TY ++I GFC  G ++ A  + K M ++G   + 
Sbjct: 391 CKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDR 450

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V +SAL+ G+C+ G +  A   L EM + G    P+ VTYT ++  FC KG  +    +L
Sbjct: 451 VGFSALICGMCKEGRVIDAERALREMLRAG--MKPDDVTYTMMMDAFCKKGDAQTGFKLL 508

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             M++ G  PN VT + L+ G C  G +  A  L+D ++  G V     Y++L   L   
Sbjct: 509 KEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTL---LEGH 565

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            R   A K + +    G+  D  +   ++ EL
Sbjct: 566 HRHANASKHYKQKPEIGIVADLASYKSLVNEL 597


>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
 gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
          Length = 447

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 158/335 (47%), Gaps = 40/335 (11%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA    +A+ +L +M    +RP+ +I+  +IR  C  G +  A    + +G  D  P++ 
Sbjct: 42  KAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRIGE-DCAPNVY 100

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY +++   C +G+  +A GL   M + GC+ N+V Y+AL+DG  +L  ++  L LL EM
Sbjct: 101 TYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEM 160

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMK-------------------------------- 288
            + G  C  +V+TYT ++ IFC    +                                 
Sbjct: 161 SQRG--CRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFTALSTAEGDRT 218

Query: 289 -EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            EAL +L++M   G  PN+V   T++   C    LDEAYQ++  + + G  +    Y  L
Sbjct: 219 TEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKIL 278

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           VV      R  ++ +L  +ML SG   D    +V+I + C  G + E   L++ + + G 
Sbjct: 279 VVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQRG- 337

Query: 408 LSSVDSDI-HSVLLLGLCRKNHSVEAAKLARFMLK 441
             S+ S++ ++ L+   C+      A KL   M++
Sbjct: 338 --SIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQ 370



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 147/301 (48%), Gaps = 7/301 (2%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           + + Y  +++ FC+ G+   A EL+  M    + P+++ + ++I+G C AG++  A   F
Sbjct: 29  NEVSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHF 88

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + +    CA N+  YS L+D +C+ G    A  L+ EM K+G  CSPNVVTY ++I  F 
Sbjct: 89  RRIGE-DCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKG--CSPNVVTYNALIDGFR 145

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
               + E L +L  M   GC  + +T + ++  FC   ++DEAY+L++ +     V+   
Sbjct: 146 KLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNS 205

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            +++L        R  EA  L  KM+  G +P+ +    ++  LC   ++ E + +   +
Sbjct: 206 LFTALST--AEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSM 263

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              G     D   + +L++       + ++ +L   ML     L    ++ ++    K+G
Sbjct: 264 YSQG--CKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAG 321

Query: 463 D 463
           D
Sbjct: 322 D 322



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 135/320 (42%), Gaps = 68/320 (21%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   +++ +A+   R++ E D  P+   Y+ ++   C+ G    A  L+  M   
Sbjct: 71  IIRGLCTAGKVS-QALLHFRRIGE-DCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKK 128

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+++TY ++I GF    RL++   L K M + GC A+++ Y+ +LD  C+  S++ A
Sbjct: 129 GCSPNVVTYNALIDGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEA 188

Query: 254 LELLGEMEKEG---------------GD----------------CSPNVVTYTSVIQIFC 282
             LL  +EK                 GD                  PN V Y +V+ + C
Sbjct: 189 YRLLNALEKRNVVTYNSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLC 248

Query: 283 GKGMMKEALGILDRMEALGCAPNRV----------------------------------- 307
               + EA  +L  M + GC  + V                                   
Sbjct: 249 KNSRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTK 308

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T++ +I  FC  G+L EA+QL   +   GS+ S   Y++L+    + ++   A KL  +M
Sbjct: 309 TMNVVIHKFCKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQM 368

Query: 368 LASGVKPDGLACSVMIRELC 387
           + +  KP+ +  + +I+  C
Sbjct: 369 IQADFKPNVITYNSIIKSFC 388



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 3/200 (1%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           M++ F ++ R  D    ++       A N V+Y  L+ G C+ G  ++ALELL EM+  G
Sbjct: 1   MLQIFVDSKRHRDGYEFYRHRLLGSYAVNEVSYGILMQGFCKAGEFQQALELLDEMKSNG 60

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PNVV +T++I+  C  G + +AL    R+    CAPN  T STL+   C  G   E
Sbjct: 61  --VRPNVVIHTTIIRGLCTAGKVSQALLHFRRI-GEDCAPNVYTYSTLVDALCKSGQPHE 117

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           AY L+ ++V  G   +   Y++L+    + +RL E   L  +M   G + D +  ++++ 
Sbjct: 118 AYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILD 177

Query: 385 ELCLGGQVLEGFCLYEDIEK 404
             C    + E + L   +EK
Sbjct: 178 IFCKNNSIDEAYRLLNALEK 197



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 123/294 (41%), Gaps = 35/294 (11%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC------ 175
           ++GC  +V     + +   K    +E + +L++M +   R D I Y  ++ +FC      
Sbjct: 127 KKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSID 186

Query: 176 ---------EKGDMIAADELMKGMGLID------------------LYPDIITYVSMIKG 208
                    EK +++  + L   +   +                    P+ + Y +++  
Sbjct: 187 EAYRLLNALEKRNVVTYNSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLM 246

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C   RL++A  +   M   GC  + V+Y  L+      G    +LELLG M   G    
Sbjct: 247 LCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRML--GSGYI 304

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
            +  T   VI  FC  G + EA  +   M   G  P+ VT +TLI  FC     D A +L
Sbjct: 305 LDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKL 364

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           + +++      +   Y+S++    R +R +EA  +F  M+ +G  PD ++ + +
Sbjct: 365 LHQMIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDNGCFPDRVSYTTL 418



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 3/180 (1%)

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           G  + N V+Y  ++Q FC  G  ++AL +LD M++ G  PN V  +T+I+G C  G + +
Sbjct: 24  GSYAVNEVSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQ 83

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  L  + +      +   YS+LV  L ++ +  EA  L ++M+  G  P+ +  + +I 
Sbjct: 84  AL-LHFRRIGEDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALID 142

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
                 ++ E   L +++ + G     D   ++++L   C+ N   EA +L   + K+ +
Sbjct: 143 GFRKLERLDEVLMLLKEMSQRG--CRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNV 200


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 146/275 (53%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 144 AQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 203

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   ++++A  LF  M   G     V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 204 GLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 261

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++  M   G  P+++T +TLI G C EG+LD A++
Sbjct: 262 LPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFE 321

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G KPD    +++I E C
Sbjct: 322 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFC 381

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V  G  L +++++ G + SV +  ++VL+ G
Sbjct: 382 KKGDVWTGSKLLKEMQRDGHVPSVVT--YNVLMNG 414



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 4/231 (1%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A    G    V    V+ N LC++ ++ +EA  +  +M    L P  + +  +I   C+ 
Sbjct: 185 AMHASGVQPDVYTYSVLINGLCKEXKM-DEANELFDEMLVXGLVPXGVTFTTLIDGHCKN 243

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 244 GRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITY 303

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G ++ A E    M +E  +   + V YT++I   C +G   +A  +L  M
Sbjct: 304 TTLIDGCCKEGDLDTAFEHRKRMIQE--NIRLDDVAYTALISGLCQEGRSVDAEKMLREM 361

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            ++G  P+  T + +I  FC +G++    +L+ ++   G V S   Y+ L+
Sbjct: 362 LSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 121/260 (46%), Gaps = 13/260 (5%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    +  +L+
Sbjct: 54  DIXVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKL----KYFKLV 109

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC +G ++ A  + D +   G  P+ V+ +TL+ G
Sbjct: 110 WGFYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSG 169

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LDE ++L   + A G       YS L+  L +  ++ EA +LF +ML  G+ P 
Sbjct: 170 YIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPX 229

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ +     L   D   ++ L+ GLC+K    +A   
Sbjct: 230 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLP--DLITYNTLIYGLCKKGBLKQAH-- 285

Query: 436 ARFMLKKRIWLQGPYVDKIV 455
              +L   + L+G   DKI 
Sbjct: 286 ---VLIXEMSLKGXKPDKIT 302



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC++ R + +A  +LR+M     +PDT  Y  +I  FC+KGD+    +L+K
Sbjct: 336 VAYTALISGLCQEGR-SVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLK 394

Query: 189 GMGLIDLYPDIITYVSMIKG 208
            M      P ++TY  ++ G
Sbjct: 395 EMQRDGHVPSVVTYNVLMNG 414


>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 620

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 162/327 (49%), Gaps = 14/327 (4%)

Query: 124 GCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC  +V     ++  L +  R+ ++A+ + R M      P T+ YN +IR  C  GD+  
Sbjct: 266 GCTPNVVTFTALVRGLFDDGRV-HDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKG 324

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  ++  M     +P++ TY ++I GF  AG L  A  ++  M R GC  N+V Y+ ++D
Sbjct: 325 ASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVD 384

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
             C+     +A  L+ +M  E  +C PN VT+ ++I+  C    +  ALG+   M   GC
Sbjct: 385 VFCKKLMFNQAKSLIDKMLLE--NCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGC 442

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN  T + LI G   EGN  +A  ++ ++ + G   S   Y+++V  L +T+  +EA  
Sbjct: 443 VPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMV 502

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD----IHSV 418
              KM+  G++P+    S +I   C  G+V     +      +G ++ V+      ++++
Sbjct: 503 FVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWM------LGAMNVVNCHRNILVYTI 556

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRIW 445
           L+  LC ++  V+A      ML + I+
Sbjct: 557 LMAELCNQDKLVDAMTYLLKMLYEGIY 583



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 167/337 (49%), Gaps = 5/337 (1%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           V+     ++  LC + R+  E   V+  M    L+P+ I Y  ++  FC+ G++  A  +
Sbjct: 200 VAASYNAIVLALCREFRM-QEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAI 258

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           +  M +    P+++T+ ++++G  + GR+ DA  +++ M   G A + V+Y+ L+ G+C 
Sbjct: 259 LARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCS 318

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
           +G ++ A  +L  ME+ G  C PNV TY+++I  F   G +  A+ I + M   GC PN 
Sbjct: 319 VGDLKGASSILNSMEQHG--CFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNV 376

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           V  + ++  FC +   ++A  LIDK++      +   +++L+  L   +R+  A  +F +
Sbjct: 377 VVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHE 436

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M   G  P+G   + +I  L   G   +   +  +++  G   S+ +  ++ ++ GLC+ 
Sbjct: 437 MRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVT--YNTVVSGLCQT 494

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             S EA      M+ + I         I+    K G+
Sbjct: 495 RMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGE 531



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 178/380 (46%), Gaps = 16/380 (4%)

Query: 84  AALQSSYRHSSFMYNRA-CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEK 141
           AALQ  +R ++     A C+ +R+     ++    +    +GC    V    ++  LC+ 
Sbjct: 129 AALQPPHRRAAAGRTWALCQNNRVGAARKML----DEMARKGCPPDDVTYATIVSVLCKL 184

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
            RL +EA  VL  MP     P    YN ++   C +  M     ++  M    L P++IT
Sbjct: 185 DRL-DEATEVLAAMP-----PVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVIT 238

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y +++  FC AG L  AC +   M   GC  N+V ++AL+ G+   G +  AL++   M 
Sbjct: 239 YTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMV 298

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            EG   +P+ V+Y  +I+  C  G +K A  IL+ ME  GC PN  T STLI GF   G+
Sbjct: 299 AEGW--APSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGD 356

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           L  A  + + +   G   +   Y+++V    +     +A+ L  KML     P+ +  + 
Sbjct: 357 LGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNT 416

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +IR LC   +V     ++ ++ + G +   +   ++ L+ GL R+ +  +A  +   M  
Sbjct: 417 LIRSLCDCRRVGRALGVFHEMRRHGCVP--NGRTYNELIHGLFREGNCGDALHMVTEMQS 474

Query: 442 KRIWLQGPYVDKIVEHLKKS 461
             I L     + +V  L ++
Sbjct: 475 HGIELSLVTYNTVVSGLCQT 494



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 148/302 (49%), Gaps = 9/302 (2%)

Query: 83  WAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142
           WA    SY   + +    C +  +K   SI+     + ++ GC  +V+    + +   KA
Sbjct: 302 WAPSTVSY---NILIRGLCSVGDLKGASSIL----NSMEQHGCFPNVRTYSTLIDGFSKA 354

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
                A+ +   M     +P+ ++Y N++ +FC+K     A  L+  M L +  P+ +T+
Sbjct: 355 GDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTF 414

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I+  C+  R+  A G+F  M+RHGC  N   Y+ L+ G+ R G+   AL ++ EM+ 
Sbjct: 415 NTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQS 474

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G + S  +VTY +V+   C   M +EA+  + +M   G  PN  T S +I  +C EG +
Sbjct: 475 HGIELS--LVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEV 532

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
             A  ++  +       +   Y+ L+ EL    +L +A     KML  G+ P+ +  +V+
Sbjct: 533 RMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVL 592

Query: 383 IR 384
           +R
Sbjct: 593 VR 594



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    V+  LC+  R++ EAM  + KM    ++P+   ++ +I  +C++G++  A  ++ 
Sbjct: 482 VTYNTVVSGLCQT-RMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLG 540

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR-L 247
            M +++ + +I+ Y  ++   CN  +L DA      M   G   N V ++ L+ G+ R L
Sbjct: 541 AMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGVFRNL 600

Query: 248 GSME 251
           G +E
Sbjct: 601 GCIE 604


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 163/332 (49%), Gaps = 6/332 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V E  K+ GC   V     + N  C+  R+  +A   L  M +  L+P+ + Y+ +I 
Sbjct: 306 VSVFEEMKDAGCEPDVITYNSLINCFCKFERIP-QAFEYLHGMKQRGLQPNVVTYSTLID 364

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            FC+ G ++ A++    M  + L P+  TY S+I   C  G L +A  L   M++ G   
Sbjct: 365 AFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNL 424

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N+V Y+ALLDG+C  G M  A EL G + K G   +  +  YTS+   +    MM++A+ 
Sbjct: 425 NIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQI--YTSLFHGYIKAKMMEKAMD 482

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           IL+ M      P+ +   T I G C +  ++++  +I +++  G  ++   Y++L+    
Sbjct: 483 ILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYF 542

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  +  EA  L  +M   G+K   +   V+I  LC  G V +    ++ + + G   ++ 
Sbjct: 543 KVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNI- 601

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             I++ L+ GLC+ +   EA  L   ML K I
Sbjct: 602 -MIYTALIDGLCKNDCLEEAKNLFNEMLDKGI 632



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 147/293 (50%), Gaps = 4/293 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+   + M    L P    YN VI     +GD+ AA  L + M    L PDI+TY S+I 
Sbjct: 235 ALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLID 294

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G+   G L  A  +F+ MK  GC  +++ Y++L++  C+   + +A E L  M++ G   
Sbjct: 295 GYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRG--L 352

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PNVVTY+++I  FC  GM+ EA      M  +G  PN  T ++LI   C  G+L+EA++
Sbjct: 353 QPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFK 412

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  ++   G   +   Y++L+  L    R++EAE+LF  +L +G   +    + +     
Sbjct: 413 LESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYI 472

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
               + +   + E++ K       D  ++   + GLCR+N   ++  + R M+
Sbjct: 473 KAKMMEKAMDILEEMNKKNL--KPDLLLYGTKIWGLCRQNEIEDSMAVIREMM 523



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 201/418 (48%), Gaps = 25/418 (5%)

Query: 32  AERFYTHLQK---NPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQS 88
           A +F+  + +    PN       T  + +D+ C I  L+  F  +S+M       A +  
Sbjct: 375 ANKFFVDMIRVGLQPNEF-----TYTSLIDANCKIGDLNEAFKLESEMQ-----QAGVNL 424

Query: 89  SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
           +    + + +  CE  R+++   +   +++A    G  ++ ++   +F+   KA++  +A
Sbjct: 425 NIVTYTALLDGLCEDGRMREAEELFGALLKA----GWTLNQQIYTSLFHGYIKAKMMEKA 480

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
           M +L +M + +L+PD ++Y   I   C + ++  +  +++ M    L  +   Y ++I  
Sbjct: 481 MDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDA 540

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           +   G+  +A  L + M+  G    +V Y  L+DG+C++G +++A+     M + G    
Sbjct: 541 YFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNG--LQ 598

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           PN++ YT++I   C    ++EA  + + M   G +P+++  ++LI G    GN  EA  L
Sbjct: 599 PNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSL 658

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            +++V  G       Y+SL+    R  +++ A+ L  +ML  G+ PD + C  ++R+   
Sbjct: 659 RNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYE 718

Query: 389 GGQVLEGFCLYEDIEKIGFLS-SVDSDIHSVL-----LLGLCRKNHSVEAAKLARFML 440
            G + E   L++D+ + G +S ++D  + S L     L  LC      +  + A   L
Sbjct: 719 LGDINEALALHDDMARRGLISGTIDITVPSCLTAVTKLHKLCASQSGTDFHRTANLYL 776



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 170/389 (43%), Gaps = 28/389 (7%)

Query: 77  GIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKE-------------- 122
            ++FF  A  ++ +RH++  Y   C ++ I       +D     KE              
Sbjct: 111 ALKFFKEAGARAGFRHAAESY---CVLAHILFCGMFYLDARSVIKEWILLGREFPGCDFF 167

Query: 123 -------EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
                    C     +   +FN+     +  EA     KM +F + P     N ++    
Sbjct: 168 DMLWSTRNVCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLS 227

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +      A    K M +  L P + TY  +I      G LE A  LF+ MK  G   ++V
Sbjct: 228 KSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIV 287

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y++L+DG  ++G +  A+ +  EM+  G  C P+V+TY S+I  FC    + +A   L 
Sbjct: 288 TYNSLIDGYGKVGMLTGAVSVFEEMKDAG--CEPDVITYNSLINCFCKFERIPQAFEYLH 345

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+  G  PN VT STLI  FC  G L EA +    ++  G   +   Y+SL+    +  
Sbjct: 346 GMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIG 405

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            L EA KL S+M  +GV  + +  + ++  LC  G++ E   L+  + K G+  +++  I
Sbjct: 406 DLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGW--TLNQQI 463

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           ++ L  G  +     +A  +   M KK +
Sbjct: 464 YTSLFHGYIKAKMMEKAMDILEEMNKKNL 492


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 173/347 (49%), Gaps = 8/347 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C+  ++ +  +I  +++        V    ++  +  LCE   +      ++ +M
Sbjct: 156 LINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTT----LMNEM 211

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            +  + PD    N V+   C++G +  A +++  M    + P+++TY +++ G C    +
Sbjct: 212 VDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEV 271

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           + A  +F  M    C AN+++Y+ L++G C++ S+++A+ L  EM ++  + +PN VTY 
Sbjct: 272 DVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ--ELTPNTVTYN 329

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           ++I   C  G +++A+ +   M A G  P+ VT  TL    C   +LD+A  L+  +   
Sbjct: 330 TLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGS 389

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
                   Y++++  + R   L++A  LFS + + G++P+    ++MI  LC  G + E 
Sbjct: 390 NWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEA 449

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             L+ ++ K G   S +   ++++  G  R N ++   +L   ML +
Sbjct: 450 SKLFSEMNKNG--CSPNDCTYNLITRGFLRNNEALRTIELLEEMLAR 494



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 159/327 (48%), Gaps = 24/327 (7%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           S ++ +       G    V  + ++ N  C   RL   A  VL K+ +   +PD + Y  
Sbjct: 598 STVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLG-YAFSVLAKLLKLGFQPDVVTYGT 656

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           ++   C+         + KG+      PDI TY S+I   CN    +    L   M    
Sbjct: 657 LMNGLCKM--------ITKGIS-----PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK 703

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              N+V +S ++D +C+ G +  A +++  M K G    P+VVTYT+++   C +  M E
Sbjct: 704 IMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRG--VEPDVVTYTALMDGHCLRSEMDE 761

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A+ + D M   GC PN  + + LI G+C    +D+A  L++++   G ++    Y++L+ 
Sbjct: 762 AVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIH 821

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L    RL+ A  LF +M+ASG  PD +   +++  LC    + E   L + IE     S
Sbjct: 822 GLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEG----S 877

Query: 410 SVDSDI--HSVLLLGLCRKNHSVEAAK 434
           ++D+DI  +++ + G+CR    +EAA+
Sbjct: 878 NLDADILVYNIAIDGMCRAG-ELEAAR 903



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 141/292 (48%), Gaps = 4/292 (1%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           KM    + PD   YN++I   C   +      L+  M    + P+++ + +++   C  G
Sbjct: 663 KMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEG 722

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            +  A  +  +M + G   ++V Y+AL+DG C    M+ A+++   M  +G  C PNV +
Sbjct: 723 MIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG--CVPNVRS 780

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y  +I  +C    M +A+G+L++M   G   + VT +TLI G C  G L  A  L  ++V
Sbjct: 781 YNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMV 840

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           A G +     Y  L+  L +   L EA  L   +  S +  D L  ++ I  +C  G++ 
Sbjct: 841 ASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELE 900

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
               L+ ++   G    V +  +++++ GLC++    EA KL R M +  IW
Sbjct: 901 AARDLFSNLSSKGLQPDVRT--YNIMIHGLCKRGLLDEANKLFRKMDENDIW 950



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 163/346 (47%), Gaps = 6/346 (1%)

Query: 93  SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWV 151
           S+  +NR        ++ S ++ +       G    V  + ++ N LC   R+ + A   
Sbjct: 44  STVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRV-DFAFSA 102

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           L K+ +   +PD   +  +IR  C +G +  A  L   M      P+++TY ++I G C 
Sbjct: 103 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 162

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
             ++ +A  +F  M   G + N+V Y++L+ G+C+L   +    L+ EM        P+V
Sbjct: 163 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVD--SKIMPDV 220

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
            T  +V+   C +GM+ EA  ++D M   G  PN VT + L+ G C+   +D A ++ D 
Sbjct: 221 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 280

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +V    V++   Y++L+    + + + +A  LF +M    + P+ +  + +I  LC  G+
Sbjct: 281 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 340

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           + +   L+ ++   G +   D   +  L   LC+  H  +A  L +
Sbjct: 341 LQDAISLFHEMVARGQIP--DLVTYRTLSDYLCKNRHLDKAMALLK 384



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 131/280 (46%), Gaps = 3/280 (1%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           YN   +   ++    + + V +    + CV +V     + N   K +  ++AM++  +M 
Sbjct: 258 YNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMS 317

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
             +L P+T+ YN +I   C  G +  A  L   M      PD++TY ++    C    L+
Sbjct: 318 RQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLD 377

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            A  L K ++      ++  Y+ +LDG+CR G +E A +L   +  +G    PNV TY  
Sbjct: 378 KAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG--LQPNVWTYNI 435

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   C +G++ EA  +   M   GC+PN  T + + +GF          +L+++++A G
Sbjct: 436 MIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG 495

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
             S     ++L+V ++    L ++ K      +S  +P G
Sbjct: 496 -FSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSG 534



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 149/317 (47%), Gaps = 19/317 (5%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS----VKMM--------KVIFN 137
           ++H + + N   + S+I  +   +  VV+A  +EG V      V MM         V +N
Sbjct: 201 WKHVTTLMNEMVD-SKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYN 259

Query: 138 -LCEKARLANE---AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            L +   L NE   A+ V   M   D   + I YN +I  +C+   +  A  L + M   
Sbjct: 260 ALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ 319

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +L P+ +TY ++I G C+ GRL+DA  LF  M   G   +LV Y  L D +C+   +++A
Sbjct: 320 ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKA 379

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + LL  +E  G +  P++  YT+++   C  G +++A  +   + + G  PN  T + +I
Sbjct: 380 MALLKAIE--GSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI 437

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C +G L EA +L  ++   G   +   Y+ +    +R        +L  +MLA G  
Sbjct: 438 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFS 497

Query: 374 PDGLACSVMIRELCLGG 390
            D    ++++  L   G
Sbjct: 498 VDVSTTTLLVGMLSDDG 514



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 26/314 (8%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+    +M      P T+ +  ++    +         L   M    + PD+ T   +
Sbjct: 563 DDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNIL 622

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL------------GSMERA 253
           I  FC+  RL  A  +   + + G   ++V Y  L++G+C++             S+  A
Sbjct: 623 INSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHA 682

Query: 254 L----------ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           L           LL EM        PNVV +++V+   C +GM+  A  ++D M   G  
Sbjct: 683 LCNLCEWKHVTTLLNEM--VNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVE 740

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ VT + L+ G C+   +DEA ++ D +V  G V +   Y+ L+    + +R+ +A  L
Sbjct: 741 PDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGL 800

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
             +M   G+  D +  + +I  LC  G++     L+ ++   G +   D   + +LL  L
Sbjct: 801 LEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIP--DLVTYRILLDYL 858

Query: 424 CRKNHSVEAAKLAR 437
           C+ +H  EA  L +
Sbjct: 859 CKNHHLAEAMVLLK 872



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 113/248 (45%), Gaps = 8/248 (3%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P  + +  ++              L + M   G   ++   + +++ +C L  ++ A   
Sbjct: 43  PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 102

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L ++ K G    P+  T+T++I+  C +G + EAL + D+M   G  PN VT  TLI G 
Sbjct: 103 LAKILKLGH--QPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGL 160

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C +  + EA+ +  +++  G   +   Y+SL+  L +    K    L ++M+ S + PD 
Sbjct: 161 CKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDV 220

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAK 434
              + ++  LC  G V E      D+  +     V+ ++  ++ L+ G C +N    A K
Sbjct: 221 FTLNTVVDALCKEGMVAEA----HDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVK 276

Query: 435 LARFMLKK 442
           +   M+ K
Sbjct: 277 VFDTMVHK 284



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 4/186 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + V +    +GCV +V+   ++ N  C+  R+ ++AM +L +M    L  DT+ YN +I 
Sbjct: 763 VKVFDTMVHKGCVPNVRSYNILINGYCQIQRM-DKAMGLLEQMSLQGLIADTVTYNTLIH 821

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G +  A  L   M      PD++TY  ++   C    L +A  L K ++     A
Sbjct: 822 GLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDA 881

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +++ Y+  +DG+CR G +E A +L   +  +G    P+V TY  +I   C +G++ EA  
Sbjct: 882 DILVYNIAIDGMCRAGELEAARDLFSNLSSKG--LQPDVRTYNIMIHGLCKRGLLDEANK 939

Query: 293 ILDRME 298
           +  +M+
Sbjct: 940 LFRKMD 945



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 129/288 (44%), Gaps = 5/288 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+    +M      P T+ +N ++    +         L + M    + PD+ T   +
Sbjct: 27  DEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIV 86

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I   C+  R++ A      + + G   +   ++ L+ G+C  G +  AL L  +M  EG 
Sbjct: 87  INSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG- 145

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PNVVTY ++I   C    + EA  I   M   G +PN VT ++LI G C        
Sbjct: 146 -FQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHV 204

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L++++V    +      +++V  L +   + EA  +   M+  GV+P+ +  + ++  
Sbjct: 205 TTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDG 264

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            CL  +V     +++ +     +++V S  ++ L+ G C K  SV+ A
Sbjct: 265 HCLRNEVDVAVKVFDTMVHKDCVANVIS--YNTLINGYC-KIQSVDKA 309



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 2/173 (1%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L++A   F  M       + V ++ LL  I +       L L  +M+  G    P+V T 
Sbjct: 26  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFG--IPPDVYTL 83

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             VI   C    +  A   L ++  LG  P+  T +TLI+G CVEG + EA  L DK++ 
Sbjct: 84  AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 143

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
            G   +   Y +L+  L + +++ EA  +FS+M+  G+ P+ +  + +I  LC
Sbjct: 144 EGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLC 196



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 6/134 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C + R++   ++  ++V +    G +  +   +++ + LC+   LA EAM +L+ +   +
Sbjct: 824 CHVGRLQHAIALFHEMVAS----GQIPDLVTYRILLDYLCKNHHLA-EAMVLLKAIEGSN 878

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L  D ++YN  I   C  G++ AA +L   +    L PD+ TY  MI G C  G L++A 
Sbjct: 879 LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEAN 938

Query: 220 GLFKVMKRHGCAAN 233
            LF+ M  +   +N
Sbjct: 939 KLFRKMDENDIWSN 952


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 140/263 (53%), Gaps = 4/263 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + +N ++   C+  D+ +A+ L   M    + PD+ TY + ++G C AGR++DA  +
Sbjct: 277 PTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEM 336

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F+ M+  G   N V ++ L+D  C+ G++   LEL  EM   G     ++V Y ++    
Sbjct: 337 FEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRG--IKTDLVAYNALANGL 394

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C    +K A  I++ M   G  P++VT +TLI GFC EG LD A ++  ++   G     
Sbjct: 395 CRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDE 454

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++L+  L ++ R  ++E++  +M+ +G++PD    +++I   C    V  GF L ++
Sbjct: 455 VTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKE 514

Query: 402 IEKIGFLSSVDSDIHSVLLLGLC 424
           ++  G    V +  ++V++ G C
Sbjct: 515 MQNKGRKPGVVT--YNVVMNGFC 535



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 130/255 (50%), Gaps = 3/255 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+  R+  +A+ +  +M E  + P+T+++  +I   C++G++ A  EL + M    +  
Sbjct: 324 LCKAGRI-QDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKT 382

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D++ Y ++  G C    L+ A  + + M+ +G   + V Y+ L+DG C+ G ++ A+E+ 
Sbjct: 383 DLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMK 442

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM  EG   + + VTYT++I      G   ++  IL  M   G  P+  T + +I  FC
Sbjct: 443 QEMSDEG--VALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFC 500

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
              ++   ++L+ ++   G       Y+ ++       ++K A+ L + ML  GV PD +
Sbjct: 501 KNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDI 560

Query: 378 ACSVMIRELCLGGQV 392
             ++++   C  G+V
Sbjct: 561 TYNILLDGHCKHGKV 575



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + +++ +   +EG  +       + +   K+  + ++  +L +M E  L PD   Y  VI
Sbjct: 437 MAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVI 496

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
             FC+  D+    +L+K M      P ++TY  ++ GFC  G++++A  L   M   G  
Sbjct: 497 DAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVC 556

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
            + + Y+ LLDG C+ G +  A EL     K       +   YTS+I  F  K   K
Sbjct: 557 PDDITYNILLDGHCKHGKVRDAEEL-----KSAKGMVSDFGLYTSLINEFVKKKSTK 608


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 162/344 (47%), Gaps = 39/344 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +  +E+  +  +M + +   D   Y+ +I   C  G++  A  + K M   
Sbjct: 261 MINGLCKCGKF-DESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAEN 319

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC----------------------- 230
            + PD++ Y +M+ G+  AGR+E+   L+KVM++ GC                       
Sbjct: 320 GVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAI 379

Query: 231 -----------AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
                       A+ + Y  L+ G+C+ G + +AL +L E E   GD   +   Y+S+I 
Sbjct: 380 SIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL--DTFAYSSMIN 437

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C +G + E  G+LD+M   GC PN    + +I GF     L++A +    +V+ G   
Sbjct: 438 GLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFP 497

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y++L+  L + +R  EA  L  +ML  G KP+ +  S+++  LC G ++     L+
Sbjct: 498 TVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLW 557

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
               + GF    D  +H++++ GLC      +A +L   M +++
Sbjct: 558 CQALEKGF--KPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRK 599



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 5/320 (1%)

Query: 110 PSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           P   +D+ +   E  GC   ++    + N   ++   +EA           L P+   YN
Sbjct: 94  PDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYN 153

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I++ C K     A EL+  M      PD+ +Y ++I      G + DA  LF  M   
Sbjct: 154 ILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER 213

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   ++  Y+ L+DG  + G +  A E+   + K G    PN+ +Y  +I   C  G   
Sbjct: 214 GVTPDVACYNILIDGFFKKGDILNASEIWERLLK-GPSVYPNIPSYNVMINGLCKCGKFD 272

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           E+  I  RM+      +  T STLI G C  GNLD A ++  ++   G       Y++++
Sbjct: 273 ESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTML 332

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
              +R  R++E  +L+  M   G +   ++ +++IR L    +V E   ++E + +    
Sbjct: 333 NGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKD-- 389

Query: 409 SSVDSDIHSVLLLGLCRKNH 428
              DS  + VL+ GLC+  +
Sbjct: 390 CCADSMTYGVLVHGLCKNGY 409



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 128/275 (46%), Gaps = 3/275 (1%)

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           EA    G + +     +I  LC + RL +E   VL +M +   +P+  + N VI  F   
Sbjct: 419 EAENGRGDLDTFAYSSMINGLCREGRL-DEVAGVLDQMTKHGCKPNPHVCNAVINGFVRA 477

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
             +  A      M     +P ++TY ++I G   A R  +A  L K M   G   N++ Y
Sbjct: 478 SKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITY 537

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           S L++G+C+   ++ AL L  +  ++G    P+V  +  +I   C  G +++AL +   M
Sbjct: 538 SLLMNGLCQGKKLDMALNLWCQALEKG--FKPDVKMHNIIIHGLCSSGKVEDALQLYSEM 595

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           +   C PN VT +TL++GF    + + A ++ D ++  G       Y+  +  L    R+
Sbjct: 596 KQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRI 655

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            +A    +  +  GV P  +  ++++R +   G +
Sbjct: 656 SDAVGFLNDAVDRGVLPTAITWNILVRAVLDNGAL 690



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 113/255 (44%), Gaps = 6/255 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S M N  C   R+ +    +  V++   + GC  +  +   + N   +A    +A+    
Sbjct: 433 SSMINGLCREGRLDE----VAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFG 488

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M      P  + YN +I    +      A  L+K M      P++ITY  ++ G C   
Sbjct: 489 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGK 548

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L+ A  L+      G   ++  ++ ++ G+C  G +E AL+L  EM++    C PN+VT
Sbjct: 549 KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR--KCVPNLVT 606

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           + ++++ F      + A  I D +   G  P+ ++ +  +KG C    + +A   ++  V
Sbjct: 607 HNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAV 666

Query: 334 AGGSVSSGGCYSSLV 348
             G + +   ++ LV
Sbjct: 667 DRGVLPTAITWNILV 681


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 162/315 (51%), Gaps = 7/315 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M E  L P+   +N ++   C+ G +  AD L+K M     +PDI T+  +I
Sbjct: 409 EAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+    ++E+A  +  VM  +G   ++  Y++LL+G+C+    E  +E    M ++G  
Sbjct: 469 HGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKG-- 526

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C+PN+ T+  +++  C    + +ALG+L+ M+     P+ VT  TLI GFC  G+LD AY
Sbjct: 527 CAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAY 586

Query: 327 QLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            L  K+     VS S   Y+ ++        +  AEKLF +M+   + PDG    +M+  
Sbjct: 587 TLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDG 646

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
            C  G V  G+    ++ + GF+ S+ +     ++  LC ++   EAA +   M++K + 
Sbjct: 647 FCKTGNVDLGYKFLLEMMENGFIPSLTT--LGRVINCLCVEDRVYEAAGIIHRMVQKGLV 704

Query: 446 LQGPYVDKIVEHLKK 460
            +   V+ I +H KK
Sbjct: 705 PEA--VNTIFDHDKK 717



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 141/316 (44%), Gaps = 4/316 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ V  +M  +D  P    YN ++ +  + G    A ++   M    + PD+ ++   +
Sbjct: 94  EAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRM 153

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           K FC   R   A  L   M   GC  N+VAY  ++ G       +   EL G+M   G  
Sbjct: 154 KSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASG-- 211

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            S  + T+  ++ + C KG +KE   +LD++   G  PN  T +  I+G C +G LD A 
Sbjct: 212 VSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAV 271

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +++ +++  G       Y+ L+  L +  + +EAE    K++  G++PD    + +I   
Sbjct: 272 RMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGY 331

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           C GG V     +  +    GF+   D   +  L+ GLC +  +  A  L    L K I  
Sbjct: 332 CKGGMVQLAERILVNAVFNGFVP--DEFTYRSLIDGLCHEGETNRALALFNEALGKGIKP 389

Query: 447 QGPYVDKIVEHLKKSG 462
                + +++ L   G
Sbjct: 390 NVILYNTLIKGLSNQG 405



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 158/366 (43%), Gaps = 35/366 (9%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I+ LC+ ++   EA   L K+    L PD+  YN +I  +C+ G +  A+ ++      
Sbjct: 292 LIYGLCKNSKF-QEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFN 350

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  TY S+I G C+ G    A  LF      G   N++ Y+ L+ G+   G +  A
Sbjct: 351 GFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEA 410

Query: 254 LELLGEMEKEG-------------GDCS--------------------PNVVTYTSVIQI 280
            +L  EM ++G             G C                     P++ T+  +I  
Sbjct: 411 AQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +  +  M+ AL ILD M   G  P+  T ++L+ G C     ++  +    +V  G   +
Sbjct: 471 YSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPN 530

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ L+  L R  +L +A  L  +M    V PD +    +I   C  G +   + L+ 
Sbjct: 531 LFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFR 590

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
            +E++ ++ S  +  +++++     K +   A KL + M+ + +   G     +V+   K
Sbjct: 591 KMEEV-YMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCK 649

Query: 461 SGDEEL 466
           +G+ +L
Sbjct: 650 TGNVDL 655



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 146/326 (44%), Gaps = 14/326 (4%)

Query: 67  HRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCV 126
           H+ +      GI   +++    + R  SF     C  SR    P   + ++     +GC 
Sbjct: 131 HKVYMRMRDRGITPDVYSF---TIRMKSF-----CRTSR----PHAALRLLNNMSSQGCE 178

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           ++V     +     +    +E   +  KM    +      +N ++ + C+KGD+   ++L
Sbjct: 179 MNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKL 238

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           +  +    + P++ TY   I+G C  G L+ A  +   +   G   ++V Y+ L+ G+C+
Sbjct: 239 LDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCK 298

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
               + A   LG++  EG    P+  TY ++I  +C  GM++ A  IL      G  P+ 
Sbjct: 299 NSKFQEAEVYLGKLVNEG--LEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDE 356

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
            T  +LI G C EG  + A  L ++ +  G   +   Y++L+  L     + EA +L S+
Sbjct: 357 FTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASE 416

Query: 367 MLASGVKPDGLACSVMIRELCLGGQV 392
           M   G+ P+    ++++  LC  G V
Sbjct: 417 MSEKGLIPEVQTFNILVNGLCKMGCV 442



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 153/364 (42%), Gaps = 39/364 (10%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++V E      C  +V     I ++   +   ++A  V  +M +  + PD   +   ++ 
Sbjct: 96  VNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKS 155

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF------------------------ 209
           FC      AA  L+  M       +++ Y +++ GF                        
Sbjct: 156 FCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLC 215

Query: 210 -----------CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
                      C  G +++   L   + + G   NL  Y+  + G+C+ G ++ A+ ++G
Sbjct: 216 LSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVG 275

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
            +  +G    P+VVTY  +I   C     +EA   L ++   G  P+  T +TLI G+C 
Sbjct: 276 RLIDQGP--KPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCK 333

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G +  A +++   V  G V     Y SL+  L        A  LF++ L  G+KP+ + 
Sbjct: 334 GGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVIL 393

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            + +I+ L   G +LE   L  ++ + G +  V +   ++L+ GLC+     +A  L + 
Sbjct: 394 YNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQT--FNILVNGLCKMGCVSDADGLVKV 451

Query: 439 MLKK 442
           M+ K
Sbjct: 452 MISK 455



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 12/235 (5%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           YV  +K +   G++++A  +F+ M  + C   + +Y+A++  +   G  ++A ++   M 
Sbjct: 79  YVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMR 138

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G   +P+V ++T  ++ FC       AL +L+ M + GC  N V   T++ GF  E  
Sbjct: 139 DRG--ITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENF 196

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
            DE Y+L  K++A G       ++ L+  L +   +KE EKL  K++  GV P+    + 
Sbjct: 197 KDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNF 256

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFL----SSVDSDIHSVLLLGLCRKNHSVEA 432
            I+ LC  G+      L   +  +G L       D   ++ L+ GLC+ +   EA
Sbjct: 257 FIQGLCQKGE------LDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEA 305



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 113/274 (41%), Gaps = 44/274 (16%)

Query: 218 ACGLFKVMKRH-GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           A  +F  M++  G    L  Y ++++ +   G  E   E+L +M +  G+     V Y  
Sbjct: 23  ALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLEGV-YVG 81

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
            ++ +  KG ++EA+ + +RM+   C P   + + ++      G  D+A+++  ++   G
Sbjct: 82  AMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRG 141

Query: 337 -----------------------------SVSSGGC------YSSLVVELVRTKRLKEAE 361
                                        ++SS GC      Y ++V          E  
Sbjct: 142 ITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGY 201

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +LF KMLASGV       + ++  LC  G V E   L + + K G L ++ +  ++  + 
Sbjct: 202 ELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFT--YNFFIQ 259

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
           GLC+K     A ++       R+  QGP  D + 
Sbjct: 260 GLCQKGELDAAVRMV-----GRLIDQGPKPDVVT 288



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 98/259 (37%), Gaps = 86/259 (33%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYK---EEGCVVSVKMMKVIF-NLCEKARLA 145
           Y ++S + N  C+ S+ +       DV+E YK   E+GC  ++    ++  +LC   +L 
Sbjct: 497 YTYNSLL-NGLCKTSKYE-------DVMETYKTMVEKGCAPNLFTFNILLESLCRYHKL- 547

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG-------------- 191
           ++A+ +L +M    + PD + +  +I  FC+ GD+  A  L + M               
Sbjct: 548 DKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNI 607

Query: 192 --------------------LID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
                               ++D  L PD  TY  M+ GFC  G ++             
Sbjct: 608 IIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVD------------- 654

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
                + Y  LL                 EM + G    P++ T   VI   C +  + E
Sbjct: 655 -----LGYKFLL-----------------EMMENG--FIPSLTTLGRVINCLCVEDRVYE 690

Query: 290 ALGILDRMEALGCAPNRVT 308
           A GI+ RM   G  P  V 
Sbjct: 691 AAGIIHRMVQKGLVPEAVN 709


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 162/327 (49%), Gaps = 14/327 (4%)

Query: 124 GCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC  +V     ++  L +  R+ ++A+ + R M      P T+ YN +IR  C  GD+  
Sbjct: 293 GCTPNVVTFTALVRGLFDDGRV-HDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKG 351

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  ++  M     +P++ TY ++I GF  AG L  A  ++  M R GC  N+V Y+ ++D
Sbjct: 352 ASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVD 411

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
             C+     +A  L+ +M  E  +C PN VT+ ++I+  C    +  ALG+   M   GC
Sbjct: 412 VFCKKLMFNQAKSLIDKMLLE--NCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGC 469

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN  T + LI G   EGN  +A  ++ ++ + G   S   Y+++V  L +T+  +EA  
Sbjct: 470 VPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMV 529

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD----IHSV 418
              KM+  G++P+    S +I   C  G+V     +      +G ++ V+      ++++
Sbjct: 530 FVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWM------LGAMNVVNCHRNILVYTI 583

Query: 419 LLLGLCRKNHSVEAAKLARFMLKKRIW 445
           L+  LC ++  V+A      ML + I+
Sbjct: 584 LMAELCNQDKLVDAMTYLLKMLYEGIY 610



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 148/302 (49%), Gaps = 9/302 (2%)

Query: 83  WAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142
           WA    SY   + +    C +  +K   SI+     + ++ GC  +V+    + +   KA
Sbjct: 329 WAPSTVSY---NILIRGLCSVGDLKGASSIL----NSMEQHGCFPNVRTYSTLIDGFSKA 381

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
                A+ +   M     +P+ ++Y N++ +FC+K     A  L+  M L +  P+ +T+
Sbjct: 382 GDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTF 441

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I+  C+  R+  A G+F  M+RHGC  N   Y+ L+ G+ R G+   AL ++ EM+ 
Sbjct: 442 NTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQS 501

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G + S  +VTY +V+   C   M +EA+  + +M   G  PN  T S +I  +C EG +
Sbjct: 502 HGIELS--LVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEV 559

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
             A  ++  +       +   Y+ L+ EL    +L +A     KML  G+ P+ +  +V+
Sbjct: 560 RMAAWMLGAMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVL 619

Query: 383 IR 384
           +R
Sbjct: 620 VR 621



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 119/256 (46%), Gaps = 7/256 (2%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           V   M +  + P+   YN ++R  C+   + AA +++  M      PD +TY +++   C
Sbjct: 150 VYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLC 209

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
              RL++A  +   M          +Y+A++  +CR   M+    ++ +M   G    PN
Sbjct: 210 KLDRLDEATEVLAAMPPVA-----ASYNAIVLALCREFRMQEVFSVVSDMVGRG--LQPN 262

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           V+TYT+++  FC  G ++ A  IL RM   GC PN VT + L++G   +G + +A  +  
Sbjct: 263 VITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWR 322

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
            +VA G   S   Y+ L+  L     LK A  + + M   G  P+    S +I      G
Sbjct: 323 WMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAG 382

Query: 391 QVLEGFCLYEDIEKIG 406
            +     ++ D+ + G
Sbjct: 383 DLGGAISIWNDMSRSG 398



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    V+  LC+  R++ EAM  + KM    ++P+   ++ +I  +C++G++  A  ++ 
Sbjct: 509 VTYNTVVSGLCQ-TRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLG 567

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR-L 247
            M +++ + +I+ Y  ++   CN  +L DA      M   G   N V ++ L+ G+ R L
Sbjct: 568 AMNVVNCHRNILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGVFRNL 627

Query: 248 GSME 251
           G +E
Sbjct: 628 GCIE 631


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 10/311 (3%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           VS K+M + +  C   R+++   W L+ M       D      +I  FCEKG        
Sbjct: 232 VSYKLMAIAY--CRMGRISDTDRW-LKDMVRRGFVVDNATCTLMISTFCEKGFASRVFWY 288

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
                 + L P++I + S+I G C  G ++ A  + + M + G   N+  ++AL+DG+C+
Sbjct: 289 FDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCK 348

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G  E+A  L  ++ +   D  PNV TYTS+I  +C +  +  A  +L RM+  G  PN 
Sbjct: 349 KGWTEKAFRLFLKLVR-SDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNT 407

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
            T + LI G    GN ++AY+L+D +   G  ++   Y++ +  L +  R  EA KL  K
Sbjct: 408 KTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKK 467

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLC 424
               G++ D +  +++I ELC      E    +  + K G    V  D+H+   L+    
Sbjct: 468 GFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAG----VQPDMHTYNTLIAAFS 523

Query: 425 RKNHSVEAAKL 435
           R+    E+ KL
Sbjct: 524 RQRRMEESEKL 534



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 181/394 (45%), Gaps = 13/394 (3%)

Query: 58  DSTCVIEVLHRC---FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIII 114
           ++TC + +   C   F S+       ++   L+ +  + + + N  C+   IKQ      
Sbjct: 266 NATCTLMISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQ----AF 321

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++E   ++G   +V     + + LC+K          L+ +   D +P+   Y ++I  
Sbjct: 322 EMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHG 381

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C++  +  A+ L+  M    L P+  TY  +I G   AG  E A  L  +M + G +AN
Sbjct: 382 YCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSAN 441

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+A +D +C+ G    A +LL +  + G     + VTYT +I   C +   +EAL  
Sbjct: 442 IFTYNAFIDSLCKKGRFLEACKLLKKGFRLG--LQADTVTYTILISELCRRADTREALVF 499

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
             +M   G  P+  T +TLI  F  +  ++E+ +L  + V  G V +   Y+S++    R
Sbjct: 500 FSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCR 559

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            + +  A K F++M   G  PD L    +I  LC   ++ E   LYE +   G LS  + 
Sbjct: 560 DRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKG-LSPCEV 618

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
                L    C+++ S  A  +    L K++W++
Sbjct: 619 -TRLTLAYEYCKQDDSATAMVILE-RLDKKLWIR 650



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 133/285 (46%), Gaps = 3/285 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C++ +L N A  +L +M E  L P+T  Y  +I    + G+   A ELM  MG  
Sbjct: 378 MIHGYCKEDKL-NRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKE 436

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               +I TY + I   C  GR  +AC L K   R G  A+ V Y+ L+  +CR      A
Sbjct: 437 GFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREA 496

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L    +M K G    P++ TY ++I  F  +  M+E+  +      LG  P + T +++I
Sbjct: 497 LVFFSKMFKAG--VQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMI 554

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C + N+  A +  +++   G       Y +L+  L +  +L EA +L+  M+  G+ 
Sbjct: 555 CGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLS 614

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
           P  +    +  E C          + E ++K  ++ +V++ I  +
Sbjct: 615 PCEVTRLTLAYEYCKQDDSATAMVILERLDKKLWIRTVNTLIRKL 659


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 145/288 (50%), Gaps = 2/288 (0%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M   ++ PD + YN +I   C++  +  A +L+  M      P+  TY  ++ G C  GR
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +E+A  L   MKR G   ++V YS L+ G C  G ++R   L  EM ++G   SPNVV Y
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKG--ISPNVVVY 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + +I  FC KG+ +EA  +L  M   G  P+  T + +I G C +G   +A  L D +  
Sbjct: 119 SCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTE 178

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G   S   Y+ L+  L +   + +A K+F  ML  G + + ++ + +I  LC  G++ E
Sbjct: 179 KGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDE 238

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              L+  + + G     D    + ++ GLC++    +A ++   M+++
Sbjct: 239 AMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIER 286



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 147/277 (53%), Gaps = 6/277 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ RL  +A+ +L +M      P++  Y  ++   C++G +  A  L+  M   
Sbjct: 16  IINGLCKEKRL-EKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEMKRK 74

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L  D++ Y ++I GFC+ G L+    LF  M   G + N+V YS L++G C+ G    A
Sbjct: 75  GLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREA 134

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +L  M + G    P+V TYT +I   C  G  ++AL + D M   G  P+ VT + LI
Sbjct: 135 TAVLHTMTERG--IQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLI 192

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG-- 371
            G C EG + +A+++ + ++  G       Y++L++ L    +L EA KLFS +L  G  
Sbjct: 193 NGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNY 252

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYED-IEKIGF 407
           V+PD +  + +I+ LC  G++ +   +Y+  IE+  F
Sbjct: 253 VEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSF 289



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 166/339 (48%), Gaps = 11/339 (3%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157
           N  C+  R+++   +++++  +  E        +M     LC++ R+  EAM +L +M  
Sbjct: 18  NGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMD---GLCKEGRV-EEAMRLLGEMKR 73

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
             L  D ++Y+ +I  FC KG +     L   M    + P+++ Y  +I GFC  G   +
Sbjct: 74  KGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWRE 133

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  +   M   G   ++  Y+ ++ G+C+ G   +AL+L   M ++G +  P+ VTY  +
Sbjct: 134 ATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEE--PSTVTYNVL 191

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I   C +G + +A  I + M   G     V+ +TLI G C  G LDEA +L   ++  G+
Sbjct: 192 INGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGN 251

Query: 338 VSSGG--CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
                   +++++  L +  RL +A +++  M+  G   +   C ++I E    G + + 
Sbjct: 252 YVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKA 311

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
             L++ + K+G + S  S  +SV++ G C K H +  AK
Sbjct: 312 MELWKRVHKLGLVPS--STTYSVMIDGFC-KMHMLNFAK 347



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 162/372 (43%), Gaps = 38/372 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+K  L  EA  VL  M E  ++PD   Y  +I   C+ G    A +L   M   
Sbjct: 121 LINGFCKKG-LWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEK 179

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P  +TY  +I G C  G + DA  +F+ M   G    +V+Y+ L+ G+C  G ++ A
Sbjct: 180 GEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEA 239

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD------------------ 295
           ++L   + ++G    P+V+T+ +VIQ  C +G + +A+ I D                  
Sbjct: 240 MKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILI 299

Query: 296 -----------------RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                            R+  LG  P+  T S +I GFC    L+ A  L  ++   G  
Sbjct: 300 GEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLS 359

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y++L+  L +   L++A +LF +M  S  +PD ++ ++MI      G +     L
Sbjct: 360 PTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKEL 419

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
             D++++G   + D+  +S  +  L +     EA      M+   I       D +++  
Sbjct: 420 LNDMQQMGL--TPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGF 477

Query: 459 KKSGDEELITNL 470
             + + E + NL
Sbjct: 478 GLNDEIEEVINL 489



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 159/361 (44%), Gaps = 45/361 (12%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +D+ +   E+G   S     V+ N LC++  +  +A  +   M E   R + + YN +I 
Sbjct: 170 LDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIG-DAFKIFETMLEKGKRLEVVSYNTLIM 228

Query: 173 LFCEKGDMIAADELMKGMGLID---LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
             C  G +  A +L   + L D   + PD+IT+ ++I+G C  GRL+ A  ++  M   G
Sbjct: 229 GLCNNGKLDEAMKLFSSL-LEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERG 287

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              NL     L+    + G +++A+EL   + K G    P+  TY+ +I  FC   M+  
Sbjct: 288 SFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLG--LVPSSTTYSVMIDGFCKMHMLNF 345

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL-------------------ID 330
           A G+  RM+  G +P     +TL+   C E +L++A +L                   ID
Sbjct: 346 AKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMID 405

Query: 331 KVVAGGSVSSGG----------------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
             +  G + S                   YSS +  L +  +++EA+  F  M+ASG+ P
Sbjct: 406 GTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITP 465

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D      +I+   L  ++ E   L   +  +G +  +D +I + +L  LC     +   +
Sbjct: 466 DNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVI--LDLEITNSILTFLCNSAEHLHVME 523

Query: 435 L 435
           L
Sbjct: 524 L 524


>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
          Length = 552

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 165/346 (47%), Gaps = 26/346 (7%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V+   + EG V  V     + +   +     +A  V  +M    L  +  +Y+ VI  FC
Sbjct: 210 VMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFC 269

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G++  A ++ + M    + P+++ Y +MI G  N G++ +A  LF+ M    CA N++
Sbjct: 270 KSGEIDCALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNII 329

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y +++ G  ++G   RAL +  EM   G  C PN V+Y+ +I   C  G +K+A+ +  
Sbjct: 330 TYGSMIQGYFKIGDTSRALSVWEEM--IGAGCMPNAVSYSILINGLCNVGRLKDAMMVWK 387

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG-CYSSLVVELVRT 354
            M   GCAP+ +  +++IKG CV G +D   +L   ++A G        Y+ L+  L+  
Sbjct: 388 HMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLA 447

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG--FLSSVD 412
           K L  A  L ++ML  G  PD + C++ +RE   G             E+ G  FL    
Sbjct: 448 KDLPRAMDLLNRMLDQGCDPDTVTCNIFLREFGAG-------------ERKGREFLEG-- 492

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
                 L++ LC +  ++ A ++   ML K I  + P  + +V  +
Sbjct: 493 ------LVVRLCDRRRNMAAGEVLMVMLAKYIVPEAPIWEMVVRDV 532



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 139/283 (49%), Gaps = 7/283 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P    YN ++      G   AA  +M+ M    + P ++TY +++ G    GR++DA  +
Sbjct: 186 PTAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKV 245

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M+R+G A N   YS ++ G C+ G ++ AL++   M        PNVV Y+++I   
Sbjct: 246 AEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVAS--PVRPNVVLYSAMIGGL 303

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
              G M EA  +   M    CAPN +T  ++I+G+   G+   A  + ++++  G + + 
Sbjct: 304 ANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNA 363

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             YS L+  L    RLK+A  ++  ML  G  PD +A + MI+ LC+ G V  G  L+ D
Sbjct: 364 VSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYD 423

Query: 402 IEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +   G     D D+  ++VLL GL        A  L   ML +
Sbjct: 424 MLASG---HADPDVISYNVLLDGLLLAKDLPRAMDLLNRMLDQ 463



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 126/283 (44%), Gaps = 38/283 (13%)

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACG--------------------------------- 220
           DL PD  TY +++    +AGR++DA                                   
Sbjct: 114 DLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVAAEAFNPVLRAMLRAGDVKGAA 173

Query: 221 -LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF+ M+  GC      Y+ L+ G+   G    A+ ++  ME+EG    P V+TY +V+ 
Sbjct: 174 KLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREG--VVPGVMTYGAVVD 231

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                G +K+A  + + ME  G A N    ST+I GFC  G +D A ++ + +VA     
Sbjct: 232 GLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMVASPVRP 291

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   YS+++  L    ++ EAE LF +M+ S   P+ +    MI+     G       ++
Sbjct: 292 NVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVW 351

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           E++   G + +  S  +S+L+ GLC      +A  + + ML +
Sbjct: 352 EEMIGAGCMPNAVS--YSILINGLCNVGRLKDAMMVWKHMLDR 392


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 167/335 (49%), Gaps = 16/335 (4%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F++N+A E           + +V+   + GC  ++    V+ N LC++  + + A  
Sbjct: 123 HGLFLHNKASEA----------VALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI-DLAFN 171

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L KM    +  D +I+N +I   C+   +  A  L K M    + P+++TY S+I   C
Sbjct: 172 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLC 231

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           + GR  DA  L   M       NLV ++AL+D   + G    A +L  +M K   D  P+
Sbjct: 232 SYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSID--PD 289

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY S+I  FC    + +A  + + M +  C P+  T +TLIKGFC    +++  +L  
Sbjct: 290 IFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFR 349

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V     Y++L+  L        A+K+F +M++ GV PD +  S+++  LC  G
Sbjct: 350 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 409

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           ++ +   +++ ++K      +D  I++ ++ G+C+
Sbjct: 410 KLEKALEVFDYMQKSEI--KLDIYIYTTMIEGMCK 442



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 181/364 (49%), Gaps = 21/364 (5%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++ +EA K E  VV      +I +LC K R  ++A+ + ++M    +RP+ + Y+++I 
Sbjct: 172 LLNKMEAAKIEADVVIFN--TIIDSLC-KYRHVDDALNLFKEMETKGIRPNVVTYSSLIS 228

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G    A +L+  M    + P+++T+ ++I  F   G+  +A  L   M +     
Sbjct: 229 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP 288

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++  Y++L++G C    +++A ++   M  +  DC P++ TY ++I+ FC    +++   
Sbjct: 289 DIFTYNSLINGFCMHDRLDKAKQMFEFMVSK--DCFPDLDTYNTLIKGFCKSKRVEDGTE 346

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M   G   + VT +TLI+G   +G+ D A ++  ++V+ G       YS L+  L 
Sbjct: 347 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 406

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              +L++A ++F  M  S +K D    + MI  +C  G+V +G+ L+  +   G   +V 
Sbjct: 407 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 466

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK------IVEHLK---KSGD 463
           +  ++ ++ GLC K    EA     + L K++   GP  D       I  HL+   K+  
Sbjct: 467 T--YNTMISGLCSKRLLQEA-----YALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAAS 519

Query: 464 EELI 467
            ELI
Sbjct: 520 AELI 523



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 173/372 (46%), Gaps = 46/372 (12%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR-LF------------- 174
           V +  ++   C   R++ +A+ ++ +M E   RPDTI +  +I  LF             
Sbjct: 81  VTLSSLLNGYCHGKRIS-DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVD 139

Query: 175 ---------------------CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
                                C++GD+  A  L+  M    +  D++ + ++I   C   
Sbjct: 140 RMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYR 199

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EKEGGDCSPNVV 272
            ++DA  LFK M+  G   N+V YS+L+  +C  G    A +LL +M EK+    +PN+V
Sbjct: 200 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK---INPNLV 256

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           T+ ++I  F  +G   EA  + D M      P+  T ++LI GFC+   LD+A Q+ + +
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 316

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           V+         Y++L+    ++KR+++  +LF +M   G+  D +  + +I+ L   G  
Sbjct: 317 VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 376

Query: 393 LEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
                +++ +   G    V  DI  +S+LL GLC      +A ++  +M K  I L    
Sbjct: 377 DNAQKVFKQMVSDG----VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 432

Query: 451 VDKIVEHLKKSG 462
              ++E + K+G
Sbjct: 433 YTTMIEGMCKAG 444



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 171/380 (45%), Gaps = 22/380 (5%)

Query: 93  SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWV 151
           S F +N+        +   ++I + E  +  G   ++    ++ N  C +++++  A+ +
Sbjct: 9   SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQIS-LALAL 67

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           L KM +    P  +  ++++  +C    +  A  L+  M  +   PD IT+ ++I G   
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
             +  +A  L   M + GC  NLV Y  +++G+C+ G ++ A  LL +M  E      +V
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM--EAAKIEADV 185

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           V + ++I   C    + +AL +   ME  G  PN VT S+LI   C  G   +A QL+  
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 245

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           ++      +   +++L+   V+  +  EAEKL   M+   + PD    + +I        
Sbjct: 246 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLI-------- 297

Query: 392 VLEGFCLYEDIEK----IGFLSSVDS----DIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
              GFC+++ ++K      F+ S D     D ++ L+ G C+     +  +L R M  + 
Sbjct: 298 --NGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG 355

Query: 444 IWLQGPYVDKIVEHLKKSGD 463
           +         +++ L   GD
Sbjct: 356 LVGDTVTYTTLIQGLFHDGD 375



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 127/248 (51%), Gaps = 4/248 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P I  +  ++       + +    L + M+R G + NL  Y+ L++  CR   +  AL L
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           LG+M K G +  P++VT +S++  +C    + +A+ ++D+M  +G  P+ +T +TLI G 
Sbjct: 68  LGKMMKLGYE--PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGL 125

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
            +     EA  L+D++V  G   +   Y  +V  L +   +  A  L +KM A+ ++ D 
Sbjct: 126 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADV 185

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I  LC    V +   L++++E  G   +V +  +S L+  LC      +A++L 
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVT--YSSLISCLCSYGRWSDASQLL 243

Query: 437 RFMLKKRI 444
             M++K+I
Sbjct: 244 SDMIEKKI 251



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 3/181 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A  V ++M    + PD + Y+ ++   C  G +  A E+   M   ++  DI  Y +M
Sbjct: 377 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 436

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I+G C AG+++D   LF  +   G   N+V Y+ ++ G+C    ++ A  LL +M+++G 
Sbjct: 437 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 496

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+  TY ++I+     G    +  ++  M +     +  TI  L+     +G LD++
Sbjct: 497 --LPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-LVANMLHDGRLDKS 553

Query: 326 Y 326
           +
Sbjct: 554 F 554


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 182/390 (46%), Gaps = 41/390 (10%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMY---------NRACEMSR----------IKQNPSI 112
           S  ++ + FF WA  Q  YRH   +Y          + C+ +R          I + P  
Sbjct: 114 SDERIALDFFYWAGRQWRYRHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEA 173

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
              V+ +Y   G                  +L N AM VL  M +  + P+ +I N  I 
Sbjct: 174 FAHVMVSYSRAG------------------KLRN-AMQVLTMMQKAGVEPNLLICNTAIH 214

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
           +      +  A   ++ M L+ + P+++TY  +IKG+C+  ++E A  L   M   GC  
Sbjct: 215 VLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPP 274

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           + V+Y  ++  +C+   ++    L+ +M K+     P+ VTY +++ +    G   EAL 
Sbjct: 275 DKVSYYTVMGFLCQDKRIKEVRNLMEKMVKD-NKLFPDQVTYNTLVHMLSKHGHADEALE 333

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
            L   E  G   ++V  S ++  FC++G +D A +++++++  G       Y+++V  L 
Sbjct: 334 FLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLC 393

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  +++EA+K+  +M   G KP+ ++ + ++  LC  G  LE   +    E+  +  + +
Sbjct: 394 KVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWW--TPN 451

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +  +SV++ GL R+    EA  + R ML K
Sbjct: 452 AITYSVVMHGLRREGKLSEACDVVREMLTK 481



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 153/329 (46%), Gaps = 40/329 (12%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  RIK+  +++  +V   K+            + ++  K   A+EA+  LR+  E   
Sbjct: 287 CQDKRIKEVRNLMEKMV---KDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGF 343

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           + D + Y+ ++  FC +G M  A E++  M      PD++TY +++ G C  G++E+A  
Sbjct: 344 QVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKK 403

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV--- 277
           + + M +HGC  N V+Y+ALL+G+C+ G+   A E++   E++    +PN +TY+ V   
Sbjct: 404 MLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWW--TPNAITYSVVMHG 461

Query: 278 --------------------------------IQIFCGKGMMKEALGILDRMEALGCAPN 305
                                           I+  C +  M EA   ++     GCA N
Sbjct: 462 LRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVN 521

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  +T+I GFC   N+D A  L+D +           +++++  L +  R++EA     
Sbjct: 522 AVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTM 581

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLE 394
           KML  G+ P  +    +I + C  G+V E
Sbjct: 582 KMLKKGLDPTPVTYRAVIHQYCKMGRVEE 610



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 153/330 (46%), Gaps = 20/330 (6%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           D V  Y   G +   K +K + NL EK    N+            L PD + YN ++ + 
Sbjct: 275 DKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNK------------LFPDQVTYNTLVHML 322

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            + G    A E ++         D + Y +++  FC  GR++ A  +   M   GC+ ++
Sbjct: 323 SKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDV 382

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V Y+A+++G+C++G +E A ++L +M K G  C PN V+YT+++   C  G   EA  ++
Sbjct: 383 VTYTAVVNGLCKVGKVEEAKKMLQQMYKHG--CKPNTVSYTALLNGLCQHGNSLEAREMM 440

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           +  E     PN +T S ++ G   EG L EA  ++ +++  G   +    + L+  L   
Sbjct: 441 NTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLE 500

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
           +++ EA+K   + L  G   + +  + +I   C    +     L +D+    +L++   D
Sbjct: 501 QKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDM----YLNNKHPD 556

Query: 415 --IHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               + ++  L +K    EA      MLKK
Sbjct: 557 AVTFTAIIDALGKKGRIEEATVYTMKMLKK 586



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 168/386 (43%), Gaps = 28/386 (7%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           S + N  C   R+ +   I+ +++     +GC   V     + N LC+  ++  EA  +L
Sbjct: 351 SAIVNSFCMQGRMDRAKEIVNEMIT----KGCSPDVVTYTAVVNGLCKVGKV-EEAKKML 405

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           ++M +   +P+T+ Y  ++   C+ G+ + A E+M         P+ ITY  ++ G    
Sbjct: 406 QQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRRE 465

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G+L +AC + + M   G     V  + L+  +C    M  A + + E    G  C+ N V
Sbjct: 466 GKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRG--CAVNAV 523

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
            +T+VI  FC    +  AL +LD M      P+ VT + +I     +G ++EA     K+
Sbjct: 524 NFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKM 583

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +  G   +   Y +++ +  +  R++E  KL  KML+         C           QV
Sbjct: 584 LKKGLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLSRS------KCRTAY------NQV 631

Query: 393 LEGFCLYEDIEK----IGFL----SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +E  C + + E     +G +    S +D++   +L+     K   + A K+A  M  + +
Sbjct: 632 IEKLCNFGNPEAADKVVGLVLRTASRIDANTCHMLMESYLSKGIPLSAYKVACRMFDRNL 691

Query: 445 WLQGPYVDKIVEHLKKSGDEELITNL 470
                  +K+ + L   G  E   NL
Sbjct: 692 IPDLKLCEKLSKKLVLEGKLEEADNL 717



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 8/218 (3%)

Query: 124 GCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC V +V    VI   C+   + + A+ +L  M   +  PD + +  +I    +KG +  
Sbjct: 517 GCAVNAVNFTTVIHGFCQSDNI-DTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEE 575

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSALL 241
           A      M    L P  +TY ++I  +C  GR+E+   L  K++ R  C     AY+ ++
Sbjct: 576 ATVYTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLSRSKCRT---AYNQVI 632

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           + +C  G+ E A +++G + +       N  T   +++ +  KG+   A  +  RM    
Sbjct: 633 EKLCNFGNPEAADKVVGLVLRTASRIDAN--TCHMLMESYLSKGIPLSAYKVACRMFDRN 690

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             P+      L K   +EG L+EA  L+ + V  G++S
Sbjct: 691 LIPDLKLCEKLSKKLVLEGKLEEADNLMLQFVQRGNIS 728


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 140/264 (53%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   G +     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G     +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+ PD    +++I E C
Sbjct: 339 HRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V +G  L +++++ G + SV
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHVPSV 422



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 3/187 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+ 
Sbjct: 248 VTFTTLIDGHCKNGRV-DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLID 306

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    L PD ITY ++I G C  G L+ A    K M +     + V Y+AL+ G+C+ G
Sbjct: 307 DMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEG 366

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G   +P+  TYT +I  FC KG + +   +L  M+  G  P+ VT
Sbjct: 367 RSVDAEKMLREMLSVG--LNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 424

Query: 309 ISTLIKG 315
            + L+ G
Sbjct: 425 YNVLMNG 431



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 141/319 (44%), Gaps = 47/319 (14%)

Query: 161 RPDTIIYNNVIRLFCEKG---DMIAADELMKGMGL---IDLYPDIITYVSMIKGFCNAGR 214
           R D  +++ +I  + E G   D I    L +   L    D    ++ Y+  +K F     
Sbjct: 69  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYF----- 123

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            +   G ++ +   G  A+L  ++ L+   C+ G +  A  +   + K G    P+ V+Y
Sbjct: 124 -KLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG--LRPSAVSY 180

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            +++  +   G++ E   +   M A G  P+  T S LI G   E  +D+A +L D+++ 
Sbjct: 181 NTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLV 240

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G V +G  +++L+    +  R+  A +++ +ML+  + PD +  + +I  LC  G + +
Sbjct: 241 KGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 300

Query: 395 GFCLYEDIEKIGF-------------------LSS--------------VDSDIHSVLLL 421
              L +D+ + G                    L S              +D  +++ L+ 
Sbjct: 301 AHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALIS 360

Query: 422 GLCRKNHSVEAAKLARFML 440
           GLC++  SV+A K+ R ML
Sbjct: 361 GLCQEGRSVDAEKMLREML 379


>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 198/417 (47%), Gaps = 19/417 (4%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGI---RFFIWAALQSSYRHSSFMYNRA 100
           +++E +L    A+L +  V +VL RC      +G    RFF+WA     ++HS   ++  
Sbjct: 62  HDLELSLNPFSAQLSTNLVEQVLKRC----KNLGFSAHRFFLWAKSIPGFQHSVMSFHIL 117

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCV-VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
            E+    +  +I+ D +   +E     ++ ++  +IF    +A L + A+    +M EF 
Sbjct: 118 VEILGSCKQFAILWDFLTEMRESHHYEINSEIFWLIFRAYSQANLPDGAIRSFNRMDEFG 177

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELM-KGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           ++P     + ++ + C++  +  A +L  +      L     TY  +I G+   G  E A
Sbjct: 178 VKPTIHDLDKLLFILCKRKHVKQAQQLFHQAKNRFSLTAK--TYSILISGWGEIGDSEKA 235

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
           C LF+ M   GC  +L+AY+ LL  +C+ G ++ A  +  +M  +     P+  TY+  I
Sbjct: 236 CDLFQAMLEQGCPVDLLAYNNLLQALCKGGRVDEAKNIFHDMLSKR--VEPDAFTYSIFI 293

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             +C    ++ A  +LD+M      PN  T + +IK  C   +++EAYQL+D++++ G  
Sbjct: 294 HSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCIIKQLCKNEHVEEAYQLLDEMISRGVK 353

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y+++         +  A +L  +M      PD    +++++ L   G+  +   +
Sbjct: 354 PDTWSYNAIQAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMVLKLLIRIGRFDKVTEV 413

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA-KLARFMLKKRIWLQGPYVDKI 454
           +E++    F  SV +  +SV++ G C+K   +E A K    M+ + I    PYV  +
Sbjct: 414 WENMVDKKFYPSVST--YSVMIHGFCKKKGKLEEACKYFEMMIDEGI---PPYVTTV 465


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 141/264 (53%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + +  LRP  + +N +I  +   GD+     L   M    ++PD+ T   +I 
Sbjct: 155 AQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   ++++A  LF  M   G   N V ++ L+DG C+ G ++ ALE+  +M ++G   
Sbjct: 215 GLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQG--Y 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++  M   G  P+++T +TLI G C EG+L+ A++
Sbjct: 273 SPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+    +++I   C
Sbjct: 333 LRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V     L +++++ G +  V
Sbjct: 393 KQGDVKTASKLLKEMQRDGHVPCV 416



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 135/280 (48%), Gaps = 9/280 (3%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+++ L++G  RLG +++  
Sbjct: 132 YPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGF 191

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V T T +I   C +  M EA  + + M   G  PN VT +TLI 
Sbjct: 192 RLKTAMHASG--VHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLID 249

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  +++  G       Y++L+  L R   LK+A  L  +M   G+KP
Sbjct: 250 GHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKP 309

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDI--EKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           D +  + +I   C  G +   F L + +  E I     +D   ++ L+ GLC++  +V+A
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFELRKRMIEESI----RLDDVAYTALISGLCQEGRAVDA 365

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
            K+ R ML   +  +      I+    K GD +  + L K
Sbjct: 366 EKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLK 405



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 13/235 (5%)

Query: 80  FFIWAALQSSYRH-----SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMK 133
           F +  A+ +S  H     ++ + N  C+ S++ +   +  ++++    +G V + V    
Sbjct: 191 FRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLD----KGLVPNGVTFTT 246

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+  R+ + A+ + ++M      PD I YN +I   C KGD+  A +L+  M + 
Sbjct: 247 LIDGHCKSGRV-DLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMK 305

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD ITY ++I G C  G LE A  L K M       + VAY+AL+ G+C+ G    A
Sbjct: 306 GLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDA 365

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++L EM   G    P   TYT +I  FC +G +K A  +L  M+  G  P  VT
Sbjct: 366 EKMLREMLSVG--LKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 119/240 (49%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   F++ ++H           +L+ + +L    +  +L+
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECFRLTRKHKFWVPFDTCRKVLEHLMKL----KYFKLV 120

Query: 258 GEMEKEGGDCS-PNVVTYTSVI-QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               KE  +C  P  + + +++   FC +G ++ A  + D +   G  P+ V+ +TLI G
Sbjct: 121 WGFYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLING 180

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G+LD+ ++L   + A G        + L+  L +  ++ EA +LF++ML  G+ P+
Sbjct: 181 YIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPN 240

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  + +I   C  G+V     +Y+ + + G+  S D   ++ L+ GLCRK    +A  L
Sbjct: 241 GVTFTTLIDGHCKSGRVDLALEIYKQMLRQGY--SPDLITYNTLIYGLCRKGDLKQARDL 298


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/506 (23%), Positives = 227/506 (44%), Gaps = 54/506 (10%)

Query: 2   PRFSLSRILSSSVNIKNSKIFALHFTTASPAE----------------RFYTHLQKNPNN 45
           PR+ ++ +++  +  ++     +H T  +P E                R+Y+ L KN   
Sbjct: 39  PRYDVA-VIADLIEKQHWSKLGVHVTDINPNELFRQLISSELDPDLCLRYYSWLVKN--- 94

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSR 105
                + +   L+ T   ++LH    ++    IR F+   +++   H       A  M  
Sbjct: 95  -----SDISVSLELT--FKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCD 147

Query: 106 IKQNPSIIIDVV--------------EAYKEEGC----VVSVKMMKVIFNLCEKARLANE 147
                SII D++              EA+K  G     + ++    ++  L ++ R A +
Sbjct: 148 NVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSA-D 206

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
             +V ++M    ++P+   +N VI   C+ G M  A ++M+ M +    P++++Y ++I 
Sbjct: 207 VEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLID 266

Query: 208 GFCN---AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           G+C     G++  A  + K M  +  + NL  ++ L+DG  +  ++  ++++  EM  + 
Sbjct: 267 GYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQ- 325

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
            D  PNV++Y S+I   C  G + EA+ + D+M + G  PN +T + LI GFC    L E
Sbjct: 326 -DVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKE 384

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  +   V   G+V +   Y+ L+    +  ++ +   L  +M   G+ PD    + +I 
Sbjct: 385 ALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIA 444

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            LC  G +     L++ +   G    V      +L+ G CRK  S +AA L + M K  +
Sbjct: 445 GLCRNGNIEAAKKLFDQLTSKGLPDLV---TFHILMEGYCRKGESRKAAMLLKEMSKMGL 501

Query: 445 WLQGPYVDKIVEHLKKSGDEELITNL 470
             +    + +++   K G+ +  TN+
Sbjct: 502 KPRHLTYNIVMKGYCKEGNLKAATNM 527



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 164/333 (49%), Gaps = 11/333 (3%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW----VLRKMPEFDLRPDTIIYNN 169
           DV+E  K  GC  +V     + +  C+     N  M+    VL++M E D+ P+   +N 
Sbjct: 244 DVMEDMKVYGCSPNVVSYNTLIDGYCKLG--GNGKMYKADAVLKEMVENDVSPNLTTFNI 301

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I  F +  ++  + ++ K M   D+ P++I+Y S+I G CN G++ +A  +   M   G
Sbjct: 302 LIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAG 361

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              NL+ Y+AL++G C+   ++ AL++ G ++ +G    P    Y  +I  +C  G + +
Sbjct: 362 VQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGA--VPTTRMYNMLIDAYCKLGKIDD 419

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
              + + ME  G  P+  T + LI G C  GN++ A +L D++ + G +     +  L+ 
Sbjct: 420 GFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILME 478

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
              R    ++A  L  +M   G+KP  L  +++++  C  G +     +   +EK   L 
Sbjct: 479 GYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRL- 537

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            ++   ++VLL G  +K    +A  L   ML+K
Sbjct: 538 RMNVASYNVLLQGYSQKGKLEDANMLLNEMLEK 570



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 82  IWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141
           + A +Q +    + + N  C+   +K+     +D+  + K +G V + +M  ++ +   K
Sbjct: 358 VSAGVQPNLITYNALINGFCKNDMLKE----ALDMFGSVKGQGAVPTTRMYNMLIDAYCK 413

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
               ++   +  +M    + PD   YN +I   C  G++ AA +L   +    L PD++T
Sbjct: 414 LGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVT 472

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           +  +++G+C  G    A  L K M + G     + Y+ ++ G C+ G+++ A  +  +ME
Sbjct: 473 FHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQME 532

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           KE      NV +Y  ++Q +  KG +++A  +L+ M   G  PNR+T
Sbjct: 533 KE-RRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRIT 578



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYP 197
           C K      AM +L++M +  L+P  + YN V++ +C++G++ AA  +   M     L  
Sbjct: 481 CRKGESRKAAM-LLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRM 539

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           ++ +Y  +++G+   G+LEDA  L   M   G   N + Y
Sbjct: 540 NVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 155/311 (49%), Gaps = 6/311 (1%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL-MKGMGLI 193
           I  LC++A +  +A +VL +M    L+P+   + ++I   C+ G    A  L +K +   
Sbjct: 262 IDGLCKRAYV-KQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSS 320

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P++ TY  MI G+C  G+L  A  L   M   G A N   Y+ L+ G C+ GS   A
Sbjct: 321 SYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCA 380

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL+ +M +EG    PN+ TY ++I   C KG ++EA  +L      G   ++VT + +I
Sbjct: 381 FELMNKMRREG--FQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMI 438

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C +G++  A  L +++   G       Y++L+    + ++++E++KLF K LA  + 
Sbjct: 439 TEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELV 498

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P     + MI   C  G+      ++E + + G     DS  +  L+ GLC+++   EA 
Sbjct: 499 PTKQTYTSMIAGYCKVGKSTSALRVFERMVQNG--CQADSITYGALISGLCKESRLEEAR 556

Query: 434 KLARFMLKKRI 444
            L   ML KR+
Sbjct: 557 ALYEGMLDKRL 567



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 139/268 (51%), Gaps = 7/268 (2%)

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           ++R+FC+KG      EL + M  +   P+++ Y + I G C    ++ A  + + M   G
Sbjct: 226 IVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKG 285

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              N+  +++L++G+C++G  ERA  L  ++ K      PNV TYT +I  +C +G +  
Sbjct: 286 LKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSS-YKPNVHTYTVMIGGYCKEGKLAR 344

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  +L RM   G APN  T +TLI G C EG+ + A++L++K+   G   +   Y++L+ 
Sbjct: 345 AEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALID 404

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L +  +++EA K+       G++ D +  +VMI E C  G +     L+  + + G   
Sbjct: 405 GLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENG--- 461

Query: 410 SVDSDIH--SVLLLGLCRKNHSVEAAKL 435
               DIH  + L+   C++    E+ KL
Sbjct: 462 -CHPDIHTYTTLIARYCQQRQMEESQKL 488



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 143/286 (50%), Gaps = 10/286 (3%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P+   Y  +I  +C++G +  A+ L+  M    L P+  TY ++I G C  G    A  
Sbjct: 323 KPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFE 382

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M+R G   N+  Y+AL+DG+C+ G ++ A ++L     +G     + VTYT +I  
Sbjct: 383 LMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQG--LQLDKVTYTVMITE 440

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G +  AL + +RM   GC P+  T +TLI  +C +  ++E+ +L DK +A   V +
Sbjct: 441 HCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPT 500

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+S++    +  +   A ++F +M+ +G + D +    +I  LC   ++ E   LYE
Sbjct: 501 KQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYE 560

Query: 401 DIEKIGFLSS--VDSDIHSVLL-LGLCRKNHSVEAAKLARFMLKKR 443
                G L    V  ++  V L    CR+  +V A  +   + K+R
Sbjct: 561 -----GMLDKRLVPCEVTPVTLAFEYCRREKAVVAVSILDRLDKRR 601



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 130/293 (44%), Gaps = 28/293 (9%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           D+R    +Y      F ++G +  A E M+                M+  F  AGRL +A
Sbjct: 89  DVRHLMRLYVTAATTFVDRGSLPMAHEAMR---------------RMVAAFAEAGRLPEA 133

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             +   M+ HG    +   + +L      GS   A ++   M   GG   P+  ++ ++I
Sbjct: 134 ADMVFEMRSHGLPFCVETANWVLRAGLDTGSFAYARKVFDGMVTRGG-LLPDARSFRALI 192

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C  G M+E   +L  M+  G   +  T + +++ FC +G   +  +L  +++  G+ 
Sbjct: 193 VGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDVSELFRRMLEMGTP 252

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y++ +  L +   +K+A  +  +M+A G+KP+    + +I  LC  G     F L
Sbjct: 253 PNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRL 312

Query: 399 YEDIEKIGFLSSVDSDIH--SVLLLGLCRKNHSVEAAKLARF-MLKKRIWLQG 448
           +  + K    SS   ++H  +V++ G C++       KLAR  ML  R+  QG
Sbjct: 313 FLKLIKS---SSYKPNVHTYTVMIGGYCKE------GKLARAEMLLGRMVEQG 356



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 3/199 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+K ++  EA  VLR      L+ D + Y  +I   C++G +  A +L   M   
Sbjct: 402 LIDGLCKKGKI-QEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAEN 460

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             +PDI TY ++I  +C   ++E++  LF              Y++++ G C++G    A
Sbjct: 461 GCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSA 520

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L +   M + G  C  + +TY ++I   C +  ++EA  + + M      P  VT  TL 
Sbjct: 521 LRVFERMVQNG--CQADSITYGALISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTLA 578

Query: 314 KGFCVEGNLDEAYQLIDKV 332
             +C       A  ++D++
Sbjct: 579 FEYCRREKAVVAVSILDRL 597



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 5/200 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+     E GC   +     +     + R   E+  +  K    +L P    Y ++I  
Sbjct: 451 LDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAG 510

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C+ G   +A  + + M       D ITY ++I G C   RLE+A  L++ M        
Sbjct: 511 YCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRLVPC 570

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            V    L    CR      A+ +L  ++K   + + NV     +++     G +++A   
Sbjct: 571 EVTPVTLAFEYCRREKAVVAVSILDRLDKRRKNHTVNV-----LVRKLSAIGHVEDASLF 625

Query: 294 LDRMEALGCAPNRVTISTLI 313
           L +   +  A +R+  ++ I
Sbjct: 626 LKKALDVDLAVDRLAYTSFI 645


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 198/408 (48%), Gaps = 11/408 (2%)

Query: 29  ASPAERFYTHLQKNPNN-IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQ 87
           A  AE+F   + KNPN+ IE  L     +L    ++EVL +   +   + + FF WA  Q
Sbjct: 91  AQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKK-LSNAGFLALSFFRWAEKQ 149

Query: 88  SSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
             ++H++  YN   E + +IKQ  ++I ++V   K +G ++S +   +I     +AR   
Sbjct: 150 KGFKHTTESYNLLIEALGKIKQF-NVIWNLVSDMKRKG-ILSRETFALITRRYARARKVK 207

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+    KM +F  +     +N ++   C+  ++  A E+   M      PDI +Y  ++
Sbjct: 208 EAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILL 267

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +G+     L     +++ M+  G   ++V +  L++  C+    + A+ L  EME +   
Sbjct: 268 EGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIK 327

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            SP+V  + ++I     +  +KEAL   ++++  G AP   T + ++  +C    +  AY
Sbjct: 328 PSPHV--FCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAY 385

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM-LASGVKPDGLACSVMIRE 385
           +++D++   G   +   Y  ++  L++ ++ KEA  +F +M    G +P      +MIR 
Sbjct: 386 RMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRM 445

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            C   +V     ++++++  G L  +   + S L+  LC + H +E A
Sbjct: 446 FCNEERVDMAIQIWDEMKAKGVLPGM--HLFSTLINSLCHE-HKLEDA 490


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 129/237 (54%), Gaps = 2/237 (0%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           +++P+ + +N VI+  C  G++  A E+ +GM   +   D  TY +++ G CN GR+++A
Sbjct: 170 NIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEA 229

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L   M+  G   N VA++ L+  +C+ G + RA +L+  M  +G  C PN VTY S++
Sbjct: 230 VSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKG--CVPNEVTYNSLV 287

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C KG + +A+ +L+RM A  C PN +T  TL+ GF   G   +  +++  +   G  
Sbjct: 288 HGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYR 347

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
            +   YSSL+  L +  + +   +L+ +M+  G KP+ +  S +I  LC  G+  E 
Sbjct: 348 GNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEA 404



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 160/322 (49%), Gaps = 9/322 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLF 174
           ++   K E  V   K   ++F    KA L  +A+ +  +M  EF  +     +N V+ + 
Sbjct: 87  LLHQMKCENRVFIEKSFIIMFKAYGKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVV 146

Query: 175 CEKGDMIAA----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
            ++G    A    + ++      ++ P+ +++  +IK  C  G ++ A  +F+ M    C
Sbjct: 147 IQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNC 206

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
            A+   YS L+ G+C  G ++ A+ LL EM+ EG    PN V +  +I   C KG +  A
Sbjct: 207 VADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG--TFPNPVAFNVLISALCKKGDLSRA 264

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             ++D M   GC PN VT ++L+ G C++G LD+A  L++++VA   V +   + +LV  
Sbjct: 265 SKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDG 324

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
            V+  R  +  ++   +   G + +  + S +I  L   G+   G  L++++ + G    
Sbjct: 325 FVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKG--CK 382

Query: 411 VDSDIHSVLLLGLCRKNHSVEA 432
            ++ ++S L+ GLCR+    EA
Sbjct: 383 PNTIVYSALIDGLCREGKPDEA 404



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 158/365 (43%), Gaps = 39/365 (10%)

Query: 114 IDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           ++V     +  CV        ++  LC + R+ +EA+ +L +M      P+ + +N +I 
Sbjct: 195 VEVFRGMSDRNCVADGYTYSTLMHGLCNEGRI-DEAVSLLDEMQVEGTFPNPVAFNVLIS 253

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C+KGD+  A +L+  M L    P+ +TY S++ G C  G+L+ A  L   M  + C  
Sbjct: 254 ALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVP 313

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N + +  L+DG  + G     + +L  +E++G     N  +Y+S+I     +G  +  + 
Sbjct: 314 NDITFGTLVDGFVKHGRALDGVRVLVSLEEKG--YRGNEFSYSSLISGLFKEGKGEHGMQ 371

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG---------- 342
           +   M   GC PN +  S LI G C EG  DEA + + ++   G   +            
Sbjct: 372 LWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYF 431

Query: 343 -------------------------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
                                    CYS L+  L +  +LKEA  ++ +ML+ G+K D +
Sbjct: 432 EAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVV 491

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           A S MI   C    V +G  L+  +         D   +++LL   C KN    A  +  
Sbjct: 492 AYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILN 551

Query: 438 FMLKK 442
            ML +
Sbjct: 552 TMLDQ 556



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 128/270 (47%), Gaps = 22/270 (8%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+GC  +  +   + + LC + +  +EA   L +M      P++  Y++++  + E GD+
Sbjct: 378 EKGCKPNTIVYSALIDGLCREGK-PDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDI 436

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  + K M   D     + Y  +I G C  G+L++A  ++K M   G   ++VAYS++
Sbjct: 437 HKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSM 496

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G C    +E+ ++L  +M        P+VVTY  ++  FC K  +  A+ IL+ M   
Sbjct: 497 IHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQ 556

Query: 301 GCAPNRVTISTLIKGFCVEGNLD---EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           GC P+ +T    +K   +  N+D   +  + +D+               LVV L++ +R 
Sbjct: 557 GCDPDFITCDIFLK--TLRDNMDPPQDGREFLDE---------------LVVRLIKRQRT 599

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELC 387
             A  +   ML   + P     ++ +++LC
Sbjct: 600 VGASNIIEVMLQKFLLPKPSTWALAVQQLC 629


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 142/287 (49%), Gaps = 39/287 (13%)

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R A +A+ +LR M +  +RPD + Y  +IR  C+  D+  A EL+  M    + P+++ Y
Sbjct: 108 RRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVY 167

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
             ++ G+C  GR E    +F+ M   G   ++V Y+AL+D +CR G +++A  ++  M +
Sbjct: 168 SCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTE 227

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    PNVVTY  +I   C +G ++EAL +   M   G  P+ VT +TLI G      +
Sbjct: 228 RG--LEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEM 285

Query: 323 DEAYQLIDKVVAGGS-------------------------------VSSGGCYSSLVV-- 349
           DEA  L+++++ G +                               ++  GC  +LV   
Sbjct: 286 DEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFN 345

Query: 350 ----ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
                L+R  ++K+A +L  +M +SG++PD    S++I   C   QV
Sbjct: 346 LLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQV 392



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 130/265 (49%), Gaps = 8/265 (3%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKM---PEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           +V    V+  LC +  L + A+++LR M   P    RP+ I Y  ++R  C       A 
Sbjct: 56  AVSYNTVLAALCRQGCL-DAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L++ M    + PD++TY ++I+G C+A  ++ A  L   M   G   N+V YS LL G 
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGY 174

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G  E   ++  EM   G    P+VV YT++I   C  G +K+A  ++D M   G  P
Sbjct: 175 CKTGRWESVGKVFEEMSGRG--IEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEP 232

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N VT + LI   C EG++ EA  L   +   G       Y++L+  L     + EA  L 
Sbjct: 233 NVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALL 292

Query: 365 SKMLA--SGVKPDGLACSVMIRELC 387
            +M+   + V+PD +  + +I  LC
Sbjct: 293 EEMMQGETRVRPDLMTFNSVIHGLC 317



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 168/359 (46%), Gaps = 8/359 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++   E G   +V    V+ N   K     EA+ + + M E  ++PD + YN +I    
Sbjct: 221 VMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLS 280

Query: 176 EKGDMIAADELMKGM--GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
              +M  A  L++ M  G   + PD++T+ S+I G C  G +  A  +  +M  +GC  N
Sbjct: 281 SVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCN 340

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           LVA++ L+ G+ R+  +++A+EL+ EM   G    P+  TY+ +I  FC    ++ A   
Sbjct: 341 LVAFNLLIGGLLRVHKVKKAMELMDEMASSG--LQPDSFTYSILINGFCKMRQVERAESY 398

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L  M   G  P  V    L+K  C +G + +A  L +++     + +   YS+++    +
Sbjct: 399 LSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAA-YSTMIHGAFK 457

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           +   K AE+    M+  G+ PD +  S+ I      G +     + + +   GF+   D 
Sbjct: 458 SGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVP--DV 515

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD-EELITNLP 471
            +   L+ G   K  + +  +L R M  K + L    +  IV  L  S + ++L+ +LP
Sbjct: 516 AVFDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVTSLGASIEGQKLLQSLP 574



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 147/313 (46%), Gaps = 3/313 (0%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           V  +M    + PD ++Y  +I   C  G +  A  +M  M    L P+++TY  +I   C
Sbjct: 186 VFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMC 245

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G + +A  L K M   G   ++V Y+ L+ G+  +  M+ A+ LL EM +      P+
Sbjct: 246 KEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPD 305

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           ++T+ SVI   C  G M++AL +   M   GC  N V  + LI G      + +A +L+D
Sbjct: 306 LMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMD 365

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++ + G       YS L+    + ++++ AE   S+M   G++P+ +    +++ +C  G
Sbjct: 366 EMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQG 425

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
            + +   L+ ++++      +D+  +S ++ G  +      A +  + M+ + +      
Sbjct: 426 MMGQARDLFNEMDRN---CKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVT 482

Query: 451 VDKIVEHLKKSGD 463
               +    KSGD
Sbjct: 483 YSIPINMFAKSGD 495



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 115/213 (53%), Gaps = 3/213 (1%)

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS-PNVVTYTSVIQIFCGKGMMKEAL 291
           + V+Y+ +L  +CR G ++ AL LL  M  E    S PN ++YT++++  C      +A+
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
           G+L  M+  G  P+ VT  TLI+G C   ++D A +L++++   G   +   YS L+   
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGY 174

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +T R +   K+F +M   G++PD +  + +I  LC  G+V +   + + + + G   +V
Sbjct: 175 CKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNV 234

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            +  ++VL+  +C++    EA  L + M +K +
Sbjct: 235 VT--YNVLINSMCKEGSVREALDLRKNMSEKGV 265



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 121/249 (48%), Gaps = 11/249 (4%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMK---RHGCAANLVAYSALLDGICRLGSMERAL 254
           D ++Y +++   C  G L+ A  L +VM    R     N ++Y+ L+  +C      +A+
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 255 ELLGEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
            LL  M+    DC   P+VVTY ++I+  C    +  A+ +L+ M   G  PN V  S L
Sbjct: 115 GLLRSMQ----DCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCL 170

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           + G+C  G  +   ++ +++   G       Y++L+  L R  ++K+A ++   M   G+
Sbjct: 171 LHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGL 230

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           +P+ +  +V+I  +C  G V E   L +++ + G    V +  ++ L+ GL       EA
Sbjct: 231 EPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVT--YNTLITGLSSVLEMDEA 288

Query: 433 AKLARFMLK 441
             L   M++
Sbjct: 289 MALLEEMMQ 297


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 157/305 (51%), Gaps = 8/305 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LCE   +      ++ +M +  + PD    N V+   C++G +  A +++  M    + P
Sbjct: 258 LCEWKHVTT----LMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEP 313

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +++TY +++ G C    ++ A  +F  M    C AN+++Y+ L++G C++ S+++A+ L 
Sbjct: 314 NVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLF 373

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM ++  + +PN VTY ++I   C  G +++A+ +   M A G  P+ VT  TL    C
Sbjct: 374 EEMSRQ--ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLC 431

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
              +LD+A  L+  +           Y++++  + R   L++A  LFS + + G++P+  
Sbjct: 432 KNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVW 491

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             ++MI  LC  G + E   L+ ++ K G   S +   ++++  G  R N ++   +L  
Sbjct: 492 TYNIMIHGLCKQGLLAEASKLFSEMNKNG--CSPNDCTYNLITRGFLRNNEALRTIELLE 549

Query: 438 FMLKK 442
            ML +
Sbjct: 550 EMLAR 554



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 165/381 (43%), Gaps = 41/381 (10%)

Query: 93  SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWV 151
           S+  +NR        ++ S ++ +       G    V  + ++ N LC   R+ + A   
Sbjct: 69  STVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRV-DFAFSA 127

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           L K+ +   +PD   +  +IR  C +G +  A  L   M      P+++TY ++I G C 
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
            G    A  L + M++  C  N+V +S L+D +C+   +  A  +  EM  +G   SPN+
Sbjct: 188 VGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKG--ISPNI 245

Query: 272 VTYTS-----------------------------------VIQIFCGKGMMKEALGILDR 296
           VTY S                                   V+   C +GM+ EA  ++D 
Sbjct: 246 VTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDM 305

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M   G  PN VT + L+ G C+   +D A ++ D +V    V++   Y++L+    + + 
Sbjct: 306 MIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQS 365

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
           + +A  LF +M    + P+ +  + +I  LC  G++ +   L+ ++   G +   D   +
Sbjct: 366 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIP--DLVTY 423

Query: 417 SVLLLGLCRKNHSVEAAKLAR 437
             L   LC+  H  +A  L +
Sbjct: 424 RTLSDYLCKNRHLDKAMALLK 444



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 147/310 (47%), Gaps = 19/310 (6%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS----VKMM--------KVIFN 137
           ++H + + N   + S+I  +   +  VV+A  +EG V      V MM         V +N
Sbjct: 261 WKHVTTLMNEMVD-SKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYN 319

Query: 138 -LCEKARLANE---AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            L +   L NE   A+ V   M   D   + I YN +I  +C+   +  A  L + M   
Sbjct: 320 ALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ 379

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +L P+ +TY ++I G C+ GRL+DA  LF  M   G   +LV Y  L D +C+   +++A
Sbjct: 380 ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKA 439

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + LL  +E  G +  P++  YT+++   C  G +++A  +   + + G  PN  T + +I
Sbjct: 440 MALLKAIE--GSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI 497

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C +G L EA +L  ++   G   +   Y+ +    +R        +L  +MLA G  
Sbjct: 498 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFS 557

Query: 374 PDGLACSVMI 383
            D    ++++
Sbjct: 558 VDVSTTTLLV 567



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 133/299 (44%), Gaps = 8/299 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+    +M      P T+ +N ++    +         L + M    + PD+ T   +
Sbjct: 52  DEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIV 111

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I   C+  R++ A      + + G   +   ++ L+ G+C  G +  AL L  +M  EG 
Sbjct: 112 INSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG- 170

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PNVVTY ++I   C  G    A+ +L  ME   C PN V  STLI   C +  + EA
Sbjct: 171 -FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           + +  +++  G   +   Y+SL+  L +    K    L ++M+ S + PD    + ++  
Sbjct: 230 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 289

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC  G V E      D+  +     V+ ++  ++ L+ G C +N    A K+   M+ K
Sbjct: 290 LCKEGMVAEA----HDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHK 344


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 198/408 (48%), Gaps = 11/408 (2%)

Query: 29  ASPAERFYTHLQKNPNN-IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQ 87
           A  AE+F   + KNPN+ IE  L     +L    ++EVL +   +   + + FF WA  Q
Sbjct: 91  AQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKK-LSNAGFLALSFFRWAEKQ 149

Query: 88  SSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
             ++H++  YN   E + +IKQ  ++I ++V   K +G ++S +   +I     +AR   
Sbjct: 150 KGFKHTTESYNLLIEALGKIKQF-NVIWNLVSDMKRKG-ILSRETFALITRRYARARKVK 207

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+    KM +F  +     +N ++   C+  ++  A E+   M      PDI +Y  ++
Sbjct: 208 EAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILL 267

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +G+     L     +++ M+  G   ++V +  L++  C+    + A+ L  EME +   
Sbjct: 268 EGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIK 327

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            SP+V  + ++I     +  +KEAL   ++++  G AP   T + ++  +C    +  AY
Sbjct: 328 PSPHV--FCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAY 385

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM-LASGVKPDGLACSVMIRE 385
           +++D++   G   +   Y  ++  L++ ++ KEA  +F +M    G +P      +MIR 
Sbjct: 386 RMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRM 445

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            C   +V     ++++++  G L  +   + S L+  LC + H +E A
Sbjct: 446 FCNEERVDMAIQIWDEMKAKGVLPGM--HLFSTLINSLCHE-HKLEDA 490


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 156/309 (50%), Gaps = 5/309 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI   C    ++ EA+ V  +M  F   PD + YN ++   C++  ++ A++L+  M   
Sbjct: 338 VIGGFCRAGSMS-EALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEER 396

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ T+ ++I G+C  G  E+A  LF  + R     ++V Y++L+DG+CR G + +A
Sbjct: 397 GVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKA 456

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL  +M     +  PN +TY+ +I   C KG +++A G LD M   G  PN  T +++I
Sbjct: 457 NELWDDMHAR--EILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSII 514

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           KG+C  GN+ +  Q + K+           +++L+   ++ + +  A  +F+ M    V+
Sbjct: 515 KGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVR 574

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  +++I      G + +   +++ +   G     D   +  L+ G     +S +A 
Sbjct: 575 PDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGI--EPDRYTYMSLINGHVTAGNSKQAF 632

Query: 434 KLARFMLKK 442
           +L   M+ +
Sbjct: 633 QLHDEMIHR 641



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 148/283 (52%), Gaps = 4/283 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + +N +I      GD+ AA  L+  M    L P I+TY S++KG C   R + A  +
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEV 249

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F+ M +   A ++ +++ L+ G CR+G ++ A++   EM+      +P+VV+++ +I +F
Sbjct: 250 FRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRY--VTPDVVSFSCLIGLF 307

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
             +G M  A   L  M+ LG  P+ V  + +I GFC  G++ EA ++ D++V  G +   
Sbjct: 308 SRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDV 367

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++L+  L +  RL +AEKL ++M   GV PD    + +I   C  G       L++ 
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDT 427

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + +      V +  ++ L+ G+CRK    +A +L   M  + I
Sbjct: 428 LLRQRLRPDVVT--YNSLIDGMCRKGDLAKANELWDDMHAREI 468



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 147/294 (50%), Gaps = 4/294 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A   LR+M    L PD +IY  VI  FC  G M  A  +   M      PD++TY ++
Sbjct: 314 DHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTL 373

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + G C   RL DA  L   M+  G   +L  ++ L+ G CR G+ E AL+L   + ++  
Sbjct: 374 LNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQ-- 431

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+VVTY S+I   C KG + +A  + D M A    PN +T S LI   C +G +++A
Sbjct: 432 RLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDA 491

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           +  +D++V  G++ +   Y+S++    R+  +K+ ++   KM    V PD +  + +I  
Sbjct: 492 FGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHG 551

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
                 +   F ++  +EK   +   D+  +++++ G   + +  +A ++ + M
Sbjct: 552 YIKEENMHGAFNVFNIMEKE--MVRPDAVTYNMIINGFSEQGNMQDAGRVFKGM 603



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 189/424 (44%), Gaps = 46/424 (10%)

Query: 59  STCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVV 117
           S  ++ VL R  +P  +Q   R  + +  + +    + M +  C+        ++I ++ 
Sbjct: 125 SNALLAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEM- 183

Query: 118 EAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
               E+ CV   V    V+ +   +A   + A+ ++  M    L+P  + YN+V++  C+
Sbjct: 184 ----EKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCK 239

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
                 A E+ + M    + PD+ ++  +I GFC  G +++A   +K M+      ++V+
Sbjct: 240 HRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVS 299

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           +S L+    R G M+ A   L EM+  G    P+ V YT VI  FC  G M EAL + D 
Sbjct: 300 FSCLIGLFSRRGEMDHAGAYLREMKGLG--LVPDGVIYTMVIGGFCRAGSMSEALRVRDE 357

Query: 297 MEALGCAPNRV-----------------------------------TISTLIKGFCVEGN 321
           M   GC P+ V                                   T +TLI G+C +GN
Sbjct: 358 MVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGN 417

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
            + A QL D ++          Y+SL+  + R   L +A +L+  M A  + P+ +  S+
Sbjct: 418 FENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSI 477

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +I   C  GQV + F   +++ K G L ++ +  ++ ++ G CR  +  +  +  + M +
Sbjct: 478 LIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRT--YNSIIKGYCRSGNVKKGQQFLQKMRQ 535

Query: 442 KRIW 445
             ++
Sbjct: 536 DNVF 539



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 3/242 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C +    N A+ +   +    LRPD + YN++I   C KGD+  A+EL   M   
Sbjct: 408 LIHGYCRQGNFEN-ALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAR 466

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ P+ ITY  +I   C  G++EDA G    M + G   N+  Y++++ G CR G++++ 
Sbjct: 467 EILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKG 526

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            + L +M ++  +  P+++T+ ++I  +  +  M  A  + + ME     P+ VT + +I
Sbjct: 527 QQFLQKMRQD--NVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMII 584

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GF  +GN+ +A ++   +   G       Y SL+   V     K+A +L  +M+  G  
Sbjct: 585 NGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFA 644

Query: 374 PD 375
           PD
Sbjct: 645 PD 646



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 2/207 (0%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P    +  +I+ +  + +  +A   F+++  H       A +ALL  + R G    A E 
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEA 144

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
              +     D   N  T   ++  +C       A  ++  ME     P+ VT + LI   
Sbjct: 145 YRLVLSS--DSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDAR 202

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
              G++D A  L+D +   G       Y+S++  L + +R  +A+++F  M    V PD 
Sbjct: 203 FRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDV 262

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIE 403
            + +++I   C  G+V E    Y++++
Sbjct: 263 RSFNILIGGFCRVGEVKEAVKFYKEMQ 289


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 150/302 (49%), Gaps = 7/302 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+ N   KA    EA  VL++MP     P    Y +VI   C+ GDM  A  L++ M   
Sbjct: 231 VVINGLVKAGKVAEAERVLQEMPV----PTLANYTSVIGGHCKAGDMGKAYHLLEDMKRK 286

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               D +TY ++I G C    ++ A  L + MK +    ++  Y  L+ G+CR   +  A
Sbjct: 287 GYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEA 346

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +LLG +  E  DC+PNVV+Y ++I  F     + +A  +   M   G  P+ VT STLI
Sbjct: 347 RDLLGTLRNED-DCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLI 405

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           +G C  G   EA+  ++++V    +     YSS++  L R   L  A  +F  M+A+G +
Sbjct: 406 RGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQ 465

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    + +I  LC  G++ +     +++ + G   S D   +  L++GLCR + + EA 
Sbjct: 466 PNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERG--CSPDGVTYGTLIVGLCRWSRTDEAC 523

Query: 434 KL 435
            L
Sbjct: 524 DL 525



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 9/320 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E+ C  +V     + +   KA   N+A  +  +M      PD + Y+ +IR  C  G   
Sbjct: 356 EDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRAS 415

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A   ++ M    + P +  Y S+I G C AG L+ A  +F  M  +GC  NL  Y++L+
Sbjct: 416 EAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLI 475

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G+C+ G +  A   + EM + G  CSP+ VTY ++I   C      EA  +  R    G
Sbjct: 476 YGLCKTGRLCDAKLRVKEMTERG--CSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQG 533

Query: 302 CAPNRVTISTLIKGF-CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
              +  + + +I    C+E    +A +++  V+A G+  +   Y++++  L +   L EA
Sbjct: 534 IEISETSCNVVIASLRCLE----QAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEA 589

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +L   M+ +G+KPDG     ++  +C   + +      E++ ++G   SV +  +S LL
Sbjct: 590 RQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGT--YSTLL 647

Query: 421 LGLCRKNHSVEAAKLARFML 440
             L +     EA  + R ++
Sbjct: 648 NALFKAGKPSEAHVVLRRLI 667



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 179/401 (44%), Gaps = 17/401 (4%)

Query: 65  VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKEE 123
           +LH     +S M   FF WA  +  +RH+   YN   E + R  Q         E + +E
Sbjct: 63  ILHMVKNGESAM--VFFGWAGTRQDFRHTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQE 120

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
               S+    +I  LC   +L   A  +  +M +  LRP  +    ++   C+ G++  A
Sbjct: 121 LIPDSITYGILIRGLCNFGKL-KLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELA 179

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
               + M  I   P   T+  +I G   A R+++AC  F+ MK H    N   Y+ +++G
Sbjct: 180 LRYFEKMSSI---PCAATWTILIDGLFRAIRVDEACYYFEEMK-HTAIPNNWTYTVVING 235

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           + + G +  A  +L EM        P +  YTSVI   C  G M +A  +L+ M+  G  
Sbjct: 236 LVKAGKVAEAERVLQEMP------VPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQ 289

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
            + +T +TLI G C    +D AY+L++++ +   V     Y  L+  L R KRL EA  L
Sbjct: 290 GDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDL 349

Query: 364 FSKML-ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
              +       P+ ++ + +I       +V + + L+ ++   G     D   +S L+ G
Sbjct: 350 LGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAG--QHPDVVTYSTLIRG 407

Query: 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           LC    + EA      M+ K+I  + P    ++  L ++G+
Sbjct: 408 LCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGE 448



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 116/280 (41%), Gaps = 9/280 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA--------RLANE 147
           M  R C    +     I+     +  +E C + V+ ++    + E +        R   +
Sbjct: 494 MTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQ 553

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  VLR +      P    Y  VI   C++ ++  A +L++ M    + PD  T  +++ 
Sbjct: 554 AQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVG 613

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             C   +   A    + M R G   ++  YS LL+ + + G    A  +L  +      C
Sbjct: 614 AMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTS-C 672

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+ + Y  +I  +  +  ++EA  +L  +++     + V  +TL+KG     NL   Y+
Sbjct: 673 FPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYE 732

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           L+ ++     V +   ++ L+    R  +   A ++ S+M
Sbjct: 733 LLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEM 772



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 126/305 (41%), Gaps = 36/305 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC----------------EK 177
           +I+ LC+  RL +  + V ++M E    PD + Y  +I   C                E+
Sbjct: 474 LIYGLCKTGRLCDAKLRV-KEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQ 532

Query: 178 GDMIA----------------ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           G  I+                A  +++ +      P    Y ++I+  C    L +A  L
Sbjct: 533 GIEISETSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQL 592

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M   G   +     AL+  +CR      A+  L EM + G    P+V TY++++   
Sbjct: 593 LEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGS--KPSVGTYSTLLNAL 650

Query: 282 CGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
              G   EA  +L R+     C P+ +    LI  +  +  ++EA  ++ ++ +   + S
Sbjct: 651 FKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQS 710

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+  L RT+ L+   +L  +M  +    +    +++I+  C  GQ      +  
Sbjct: 711 IVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLS 770

Query: 401 DIEKI 405
           +++K+
Sbjct: 771 EMKKV 775



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 5/152 (3%)

Query: 116 VVEAYKEE----GCVVSVKMMKVIFNLCEKARLANEAMWVLRKM-PEFDLRPDTIIYNNV 170
           V  A+ EE    G   SV     + N   KA   +EA  VLR++       PD + Y  +
Sbjct: 623 VAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGL 682

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I  +  +  +  A  +++ +        I+ Y +++KG      L+    L + MKR+  
Sbjct: 683 IAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEF 742

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEK 262
             N   ++ L+ G CRLG  +RA+ +L EM+K
Sbjct: 743 VVNEATFNILIQGFCRLGQTDRAVRVLSEMKK 774


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 161/343 (46%), Gaps = 39/343 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +  +E+  +  +M + +   D   Y+ +I   C  G++  A  + K M   
Sbjct: 236 MINGLCKCGKF-DESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAEN 294

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC----------------------- 230
            + PD++ Y +M+ G+  AGR+E+   L+KVM++ GC                       
Sbjct: 295 GVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAI 354

Query: 231 -----------AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
                       A+ + Y  L+ G+C+ G + +AL +L E E   GD   +   Y+S+I 
Sbjct: 355 SIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL--DTFAYSSMIN 412

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C +G + E  G+LD+M   GC PN    + +I GF     L++A +    +V+ G   
Sbjct: 413 GLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFP 472

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y++L+  L + +R  EA  L  +ML  G KP+ +  S+++  LC G ++     L+
Sbjct: 473 TVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLW 532

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               + GF    D  +H++++ GLC      +A +L   M ++
Sbjct: 533 CQALEKGF--KPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 573



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 41/345 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE----LMKG 189
            + N   K    ++A+ +  +MPE  + PD   YN +I  F +KGD++ A E    L+KG
Sbjct: 164 TLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKG 223

Query: 190 MGLIDLYP--------------------------------DIITYVSMIKGFCNAGRLED 217
             +    P                                D+ TY ++I G C +G L+ 
Sbjct: 224 PSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDG 283

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  ++K M  +G + ++V Y+ +L+G  R G +E  LEL   MEKEG  C   VV+Y  +
Sbjct: 284 ATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG--CR-TVVSYNIL 340

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I+       + EA+ I + +    C  + +T   L+ G C  G L++A  ++++   G  
Sbjct: 341 IRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRG 400

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
                 YSS++  L R  RL E   +  +M   G KP+   C+ +I       ++ +   
Sbjct: 401 DLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALR 460

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            + ++   G   +V +  ++ L+ GL +     EA  L + ML+K
Sbjct: 461 FFGNMVSKGCFPTVVT--YNTLINGLSKAERFSEAYALVKEMLQK 503



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 5/320 (1%)

Query: 110 PSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           P   +D+ +   E  GC   ++    + N   ++   +EA           L P+   YN
Sbjct: 69  PDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYN 128

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I++ C K     A EL+  M      PD+ +Y ++I      G + DA  LF  M   
Sbjct: 129 ILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER 188

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   ++  Y+ L+DG  + G +  A E+   + K G    PN+ +Y  +I   C  G   
Sbjct: 189 GVTPDVACYNILIDGFFKKGDILNASEIWERLLK-GPSVYPNIPSYNVMINGLCKCGKFD 247

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           E+  I  RM+      +  T STLI G C  GNLD A ++  ++   G       Y++++
Sbjct: 248 ESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTML 307

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
              +R  R++E  +L+  M   G +   ++ +++IR L    +V E   ++E + +    
Sbjct: 308 NGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKD-- 364

Query: 409 SSVDSDIHSVLLLGLCRKNH 428
              DS  + VL+ GLC+  +
Sbjct: 365 CCADSMTYGVLVHGLCKNGY 384



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 3/267 (1%)

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           EA    G + +     +I  LC + RL +E   VL +M +   +P+  + N VI  F   
Sbjct: 394 EAENGRGDLDTFAYSSMINGLCREGRL-DEVAGVLDQMTKHGCKPNPYVCNAVINGFVRA 452

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
             +  A      M     +P ++TY ++I G   A R  +A  L K M + G   N++ Y
Sbjct: 453 SKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITY 512

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           S L++G+C+   ++ AL L  +  ++G    P+V  +  +I   C  G +++AL +   M
Sbjct: 513 SLLMNGLCQGKKLDMALNLWCQALEKG--FKPDVKMHNIIIHGLCSSGKVEDALQLYSEM 570

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           +   C PN VT +TL++GF    + + A ++ D ++  G       Y+  +  L    R+
Sbjct: 571 KQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRI 630

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIR 384
            +A    +  +  GV P  +  +++++
Sbjct: 631 SDAVGFLNDAVDRGVLPTAITWNILVQ 657



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 146/334 (43%), Gaps = 42/334 (12%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++ +  ++EGC   V    +I  L E A++ +EA+ +   +PE D   D++ Y  ++  
Sbjct: 320 LELWKVMEKEGCRTVVSYNILIRGLFENAKV-DEAISIWELLPEKDCCADSMTYGVLVHG 378

Query: 174 FCEKGDMIAA----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
            C+ G +  A    +E   G G +D +     Y SMI G C  GRL++  G+   M +HG
Sbjct: 379 LCKNGYLNKALSILEEAENGRGDLDTF----AYSSMINGLCREGRLDEVAGVLDQMTKHG 434

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEG------------------------- 264
           C  N    +A+++G  R   +E AL   G M  +G                         
Sbjct: 435 CKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAY 494

Query: 265 --------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
                       PN++TY+ ++   C    +  AL +  +    G  P+    + +I G 
Sbjct: 495 ALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGL 554

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G +++A QL  ++     V +   +++L+    + +  + A K++  +L  G++PD 
Sbjct: 555 CSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDI 614

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           ++ ++ ++ LC   ++ +      D    G L +
Sbjct: 615 ISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPT 648



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 102/199 (51%), Gaps = 12/199 (6%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE--KGDM 180
           +GC  +V     + N   KA   +EA  ++++M +   +P+ I Y+ ++   C+  K DM
Sbjct: 468 KGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDM 527

Query: 181 ---IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
              +    L KG       PD+  +  +I G C++G++EDA  L+  MK+  C  NLV +
Sbjct: 528 ALNLWCQALEKGFK-----PDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTH 582

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L++G  ++   ERA ++   + + G    P++++Y   ++  C    + +A+G L+  
Sbjct: 583 NTLMEGFYKVRDFERASKIWDHILQYG--LQPDIISYNITLKGLCSCHRISDAVGFLNDA 640

Query: 298 EALGCAPNRVTISTLIKGF 316
              G  P  +T + L++G+
Sbjct: 641 VDRGVLPTAITWNILVQGY 659



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 114/255 (44%), Gaps = 6/255 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S M N  C   R+ +    +  V++   + GC  +  +   + N   +A    +A+    
Sbjct: 408 SSMINGLCREGRLDE----VAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFG 463

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M      P  + YN +I    +      A  L+K M      P++ITY  ++ G C   
Sbjct: 464 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGK 523

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L+ A  L+      G   ++  ++ ++ G+C  G +E AL+L  EM++   +C PN+VT
Sbjct: 524 KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR--NCVPNLVT 581

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           + ++++ F      + A  I D +   G  P+ ++ +  +KG C    + +A   ++  V
Sbjct: 582 HNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAV 641

Query: 334 AGGSVSSGGCYSSLV 348
             G + +   ++ LV
Sbjct: 642 DRGVLPTAITWNILV 656



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+G    VKM  +I + LC   ++  +A+ +  +M + +  P+ + +N ++  F +  D 
Sbjct: 537 EKGFKPDVKMHNIIIHGLCSSGKV-EDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDF 595

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A ++   +    L PDII+Y   +KG C+  R+ DA G        G     + ++ L
Sbjct: 596 ERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNIL 655

Query: 241 LDGICRL-GSME 251
           + G   L G ME
Sbjct: 656 VQGYLALKGYME 667


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 170/345 (49%), Gaps = 36/345 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  +C++ R+   A+ +L +M +  + P+ + Y+ +I   C  G++  A  L   M L 
Sbjct: 250 LIDGMCKEGRI-EVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLR 308

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               +I T+  +IKG    G+L +A  L+K+M + GC  N+VAY+ L+ G+C  GS+E A
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEA 368

Query: 254 LELLGEMEKEG------------------GD---------------CSPNVVTYTSVIQI 280
           L++  +M++ G                  GD               C PNVVTYT ++ +
Sbjct: 369 LQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV 428

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C   M  +A  ++++M   GC PN +T +T IKG C  G ++ A +L++++   G + +
Sbjct: 429 LCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPN 488

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ L+  L R  + +EA  LF ++ A  ++P+ +  + ++      G + E   L+ 
Sbjct: 489 ITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFG 548

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
                G  ++ DS  ++ ++   C++     AA+L   +   + W
Sbjct: 549 KALVRG--TAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEW 591



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 140/276 (50%), Gaps = 4/276 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            +P   +YN +I   C++G +  A +L+  M    + P++++Y  +I   C +G +E A 
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF  M   GC AN+  ++ L+ G    G +  AL+L   M ++G  C PNVV Y ++I 
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG--CEPNVVAYNTLIH 357

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G ++EAL + D+M+  GC PN  T S LI GF   G+L  A +  +++++ G   
Sbjct: 358 GLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRP 417

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+ +V  L +     +A  L  KM   G  P+ +  +  I+ LC  G+V     L 
Sbjct: 418 NVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLL 477

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           E ++  G L ++ +  ++ LL  L R N   EA  L
Sbjct: 478 ERMQGHGCLPNITT--YNELLDALFRMNKYEEAFGL 511



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 173/368 (47%), Gaps = 23/368 (6%)

Query: 80  FFIWAALQSSYRHSSFMY-------NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132
           FF   A  ++++H++  Y        R CEM  ++        +++  K +G      + 
Sbjct: 60  FFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQY-------ILQQMKMDGINCCEDLF 112

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
             I N  ++   A +A+ +  ++ EF  +P   IYN+++     +      + L   M  
Sbjct: 113 ICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKK 172

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             L P++ TY  ++K  C   R++ A  LF  M   GC  + V Y+ ++  +C+ G ++ 
Sbjct: 173 DGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDD 232

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A EL G  +       P+V  Y ++I   C +G ++ A+ +L  M   G  PN V+ S +
Sbjct: 233 ARELAGRFK-------PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCI 285

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I   CV GN++ A+ L  ++   G  ++   ++ L+       +L EA  L+  M+  G 
Sbjct: 286 INSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGC 345

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           +P+ +A + +I  LC  G + E   + + +++ G L +V +  +S+L+ G  +    V A
Sbjct: 346 EPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTT--YSILIDGFAKSGDLVGA 403

Query: 433 AKLARFML 440
           ++    M+
Sbjct: 404 SETWNRMI 411



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 133/272 (48%), Gaps = 3/272 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V +  +  GC+ +V    ++ +   K+     A     +M     RP+ + Y  ++ +
Sbjct: 369 LQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV 428

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C+      A+ L++ M L    P+ +T+ + IKG C  GR+E A  L + M+ HGC  N
Sbjct: 429 LCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPN 488

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+ LLD + R+   E A  L  E+E    +  PN+VTY +V+  F   GMM EAL +
Sbjct: 489 ITTYNELLDALFRMNKYEEAFGLFQEIEAR--NLQPNLVTYNTVLYGFSRAGMMGEALQL 546

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELV 352
             +    G AP+ +T +T+I  +C +G +  A QL+++V +          Y+SL+    
Sbjct: 547 FGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGAC 606

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
               ++EA     K +  G+ P+    + ++R
Sbjct: 607 NWMNIEEAMAFLDKAINQGICPNFATWNALVR 638



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRK 154
           M +  C+ S   Q  S+    VE    EGC  +       I  LC   R+   AM +L +
Sbjct: 425 MVDVLCKNSMFDQANSL----VEKMTLEGCTPNTMTFNTFIKGLCGNGRV-EWAMKLLER 479

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M      P+   YN ++           A  L + +   +L P+++TY +++ GF  AG 
Sbjct: 480 MQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGM 539

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           + +A  LF      G A + + Y+ ++   C+ G ++ A +L+ E      +  P+++TY
Sbjct: 540 MGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLV-ERVSSMKEWHPDIITY 598

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           TS+I   C    ++EA+  LD+    G  PN  T + L++ F
Sbjct: 599 TSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 131/240 (54%), Gaps = 2/240 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N +I  + + GD+     L   M      PD+ TY  +I 
Sbjct: 155 AQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G+L++A  LF  M  +G   N V ++ L+ G C+   ++ A+E+  +M  +G   
Sbjct: 215 GLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQG--L 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+   ++D M   G  P++++ +TLI G C EG+L+ A +
Sbjct: 273 SPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L +K++          Y++L+  L R  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 333 LRNKMIQESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFC 392



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 176/360 (48%), Gaps = 18/360 (5%)

Query: 80  FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139
           F++++ L  +Y  S F+ + A +  R+ +   I +      K    ++  +  K++++  
Sbjct: 66  FYVFSGLMIAYLESGFVRD-AVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDF- 123

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
                        +++ E         +N +++ FC++G+M  A  +   +    L P +
Sbjct: 124 ------------YKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSV 171

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           +++ ++I G+   G L++   L   M   G   ++  YS L++G+C+ G ++ A EL  E
Sbjct: 172 VSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNE 231

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M   G    PN VT+T++I   C    +  A+ I  +M + G +P+ +T +TLI G C +
Sbjct: 232 MLDNG--LVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKK 289

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G L + + LID+++  G       Y++L+    +   L+ A +L +KM+   ++ D +A 
Sbjct: 290 GELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAY 349

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + +I  LC  G+  +   +  ++  +G     D+  +++++   C+K  S  A+KL R M
Sbjct: 350 TALISCLCREGRAGDAEKMLREMLSVGL--KPDNGTYTMIINEFCKKRDSKTASKLLREM 407



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 146/309 (47%), Gaps = 16/309 (5%)

Query: 76  MGIRFF--IW----AALQSSYRHSSFMYN----RACEMSRIKQNPSIIIDVVEAYKEEGC 125
           M  R+F  +W      L+  Y  S + +N    R C+   ++   S    V +A  + G 
Sbjct: 112 MEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQS----VFDAITKWGL 167

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
             SV     + N   K    +E   +   M     +PD   Y+ +I   C++G +  A+E
Sbjct: 168 RPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANE 227

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L   M    L P+ +T+ ++I G C   +++ A  ++K M   G + +L+ Y+ L+ G+C
Sbjct: 228 LFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLC 287

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G +++  +L+ EM   G    P+ ++YT++I   C +G ++ AL + ++M       +
Sbjct: 288 KKGELKQVHDLIDEMIMNG--LKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLD 345

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  + LI   C EG   +A +++ ++++ G     G Y+ ++ E  + +  K A KL  
Sbjct: 346 DVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLR 405

Query: 366 KMLASGVKP 374
           +M   G  P
Sbjct: 406 EMQRDGPVP 414



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 112/218 (51%), Gaps = 4/218 (1%)

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G  A+L  ++ L+   C+ G M  A  +   + K G    P+VV++ ++I  +   G + 
Sbjct: 131 GYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWG--LRPSVVSFNTLINGYIKLGDLD 188

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           E   +   M A G  P+  T S LI G C EG LDEA +L ++++  G V +G  +++L+
Sbjct: 189 EGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLI 248

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
               + +++  A +++ +ML+ G+ PD +  + +I  LC  G++ +   L +++   G  
Sbjct: 249 HGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGL- 307

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
              D   ++ L+ G C++     A +L   M+++ I L
Sbjct: 308 -KPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRL 344



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 3/180 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  ++ + AM + ++M    L PD I YN +I   C+KG++    +L+ 
Sbjct: 242 VTFTTLIHGHCKNEKV-DLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLID 300

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  L PD I+Y ++I G C  G LE A  L   M +     + VAY+AL+  +CR G
Sbjct: 301 EMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREG 360

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM   G    P+  TYT +I  FC K   K A  +L  M+  G  P  VT
Sbjct: 361 RAGDAEKMLREMLSVG--LKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 167/335 (49%), Gaps = 16/335 (4%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F++N+A E           + +V+   + GC  ++    V+ N LC++  + + A  
Sbjct: 122 HGLFLHNKASEA----------VALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI-DLAFN 170

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L KM    +  D +I+N +I   C+   +  A  L K M    + P+++TY S+I   C
Sbjct: 171 LLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLC 230

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           + GR  DA  L   M       NLV ++AL+D   + G    A +L  +M K   D  P+
Sbjct: 231 SYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSID--PD 288

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY S+I  FC    + +A  + + M +  C P+  T +TLIKGFC    +++  +L  
Sbjct: 289 IFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFR 348

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V     Y++L+  L        A+K+F +M++ GV PD +  S+++  LC  G
Sbjct: 349 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 408

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           ++ +   +++ ++K      +D  I++ ++ G+C+
Sbjct: 409 KLEKALEVFDYMQKSEI--KLDIYIYTTMIEGMCK 441



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 182/367 (49%), Gaps = 21/367 (5%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +++ +EA K E  VV      +I +LC K R  ++A+ + ++M    +RP+ + Y+++I 
Sbjct: 171 LLNKMEAAKIEADVVIFN--TIIDSLC-KYRHVDDALNLFKEMETKGIRPNVVTYSSLIS 227

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G    A +L+  M    + P+++T+ ++I  F   G+  +A  L   M +     
Sbjct: 228 CLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP 287

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++  Y++L++G C    +++A ++   M  +  DC P++ TY ++I+ FC    +++   
Sbjct: 288 DIFTYNSLINGFCMHDRLDKAKQMFEFMVSK--DCFPDLDTYNTLIKGFCKSKRVEDGTE 345

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   M   G   + VT +TLI+G   +G+ D A ++  ++V+ G       YS L+  L 
Sbjct: 346 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 405

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              +L++A ++F  M  S +K D    + MI  +C  G+V +G+ L+  +   G   +V 
Sbjct: 406 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 465

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK------IVEHLK---KSGD 463
           +  ++ ++ GLC K    EA     + L K++   GP  D       I  HL+   K+  
Sbjct: 466 T--YNTMISGLCSKRLLQEA-----YALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAAS 518

Query: 464 EELITNL 470
            ELI  +
Sbjct: 519 AELIREM 525



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 173/372 (46%), Gaps = 46/372 (12%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR-LF------------- 174
           V +  ++   C   R++ +A+ ++ +M E   RPDTI +  +I  LF             
Sbjct: 80  VTLSSLLNGYCHGKRIS-DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVD 138

Query: 175 ---------------------CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
                                C++GD+  A  L+  M    +  D++ + ++I   C   
Sbjct: 139 RMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYR 198

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EKEGGDCSPNVV 272
            ++DA  LFK M+  G   N+V YS+L+  +C  G    A +LL +M EK+    +PN+V
Sbjct: 199 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK---INPNLV 255

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           T+ ++I  F  +G   EA  + D M      P+  T ++LI GFC+   LD+A Q+ + +
Sbjct: 256 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 315

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           V+         Y++L+    ++KR+++  +LF +M   G+  D +  + +I+ L   G  
Sbjct: 316 VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 375

Query: 393 LEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
                +++ +   G    V  DI  +S+LL GLC      +A ++  +M K  I L    
Sbjct: 376 DNAQKVFKQMVSDG----VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYI 431

Query: 451 VDKIVEHLKKSG 462
              ++E + K+G
Sbjct: 432 YTTMIEGMCKAG 443



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 147/324 (45%), Gaps = 20/324 (6%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           ++ +L KM +    P  +  ++++  +C    +  A  L+  M  +   PD IT+ ++I 
Sbjct: 63  SLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 122

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G     +  +A  L   M + GC  NLV Y  +++G+C+ G ++ A  LL +M  E    
Sbjct: 123 GLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM--EAAKI 180

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             +VV + ++I   C    + +AL +   ME  G  PN VT S+LI   C  G   +A Q
Sbjct: 181 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 240

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+  ++      +   +++L+   V+  +  EAEKL   M+   + PD    + +I    
Sbjct: 241 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLI---- 296

Query: 388 LGGQVLEGFCLYEDIEK----IGFLSSVDS----DIHSVLLLGLCRKNHSVEAAKLARFM 439
                  GFC+++ ++K      F+ S D     D ++ L+ G C+     +  +L R M
Sbjct: 297 ------NGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREM 350

Query: 440 LKKRIWLQGPYVDKIVEHLKKSGD 463
             + +         +++ L   GD
Sbjct: 351 SHRGLVGDTVTYTTLIQGLFHDGD 374



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 132/269 (49%), Gaps = 8/269 (2%)

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +K D++ +  L+  M  +   P I+T  S++ G+C+  R+ DA  L   M   G   + +
Sbjct: 56  KKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 115

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L+ G+        A+ L+  M + G  C PN+VTY  V+   C +G +  A  +L+
Sbjct: 116 TFTTLIHGLFLHNKASEAVALVDRMVQRG--CQPNLVTYGVVVNGLCKRGDIDLAFNLLN 173

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +MEA     + V  +T+I   C   ++D+A  L  ++   G   +   YSSL+  L    
Sbjct: 174 KMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYG 233

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R  +A +L S M+   + P+ +  + +I      G+ +E   L++D+ K     S+D DI
Sbjct: 234 RWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIK----RSIDPDI 289

Query: 416 --HSVLLLGLCRKNHSVEAAKLARFMLKK 442
             ++ L+ G C  +   +A ++  FM+ K
Sbjct: 290 FTYNSLINGFCMHDRLDKAKQMFEFMVSK 318



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 123/233 (52%), Gaps = 6/233 (2%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER--ALELLGEMEKEGGDCSPNV 271
           +L+DA GLF  M +     ++  ++ LL  I ++   +   +L LLG+M K G +  P++
Sbjct: 22  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYE--PSI 79

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           VT +S++  +C    + +A+ ++D+M  +G  P+ +T +TLI G  +     EA  L+D+
Sbjct: 80  VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 139

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +V  G   +   Y  +V  L +   +  A  L +KM A+ ++ D +  + +I  LC    
Sbjct: 140 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 199

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           V +   L++++E  G   +V +  +S L+  LC      +A++L   M++K+I
Sbjct: 200 VDDALNLFKEMETKGIRPNVVT--YSSLISCLCSYGRWSDASQLLSDMIEKKI 250



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 3/181 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A  V ++M    + PD + Y+ ++   C  G +  A E+   M   ++  DI  Y +M
Sbjct: 376 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 435

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I+G C AG+++D   LF  +   G   N+V Y+ ++ G+C    ++ A  LL +M+++G 
Sbjct: 436 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 495

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+  TY ++I+     G    +  ++  M +     +  TI  L+     +G LD++
Sbjct: 496 --LPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-LVANMLHDGRLDKS 552

Query: 326 Y 326
           +
Sbjct: 553 F 553


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 157/305 (51%), Gaps = 8/305 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LCE   +      ++ +M +  + PD    N V+   C++G +  A +++  M    + P
Sbjct: 258 LCEWKHVTT----LMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEP 313

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +++TY +++ G C    ++ A  +F  M    C AN+++Y+ L++G C++ S+++A+ L 
Sbjct: 314 NVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLF 373

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM ++  + +PN VTY ++I   C  G +++A+ +   M A G  P+ VT  TL    C
Sbjct: 374 EEMSRQ--ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLC 431

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
              +LD+A  L+  +           Y++++  + R   L++A  LFS + + G++P+  
Sbjct: 432 KNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVW 491

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             ++MI  LC  G + E   L+ ++ K G   S +   ++++  G  R N ++   +L  
Sbjct: 492 TYNIMIHGLCKQGLLAEASKLFSEMNKNG--CSPNDCTYNLITRGFLRNNEALRTIELLE 549

Query: 438 FMLKK 442
            ML +
Sbjct: 550 EMLAR 554



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 165/381 (43%), Gaps = 41/381 (10%)

Query: 93  SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWV 151
           S+  +NR        ++ S ++ +       G    V  + ++ N LC   R+ + A   
Sbjct: 69  STVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRV-DFAFSA 127

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           L K+ +   +PD   +  +IR  C +G +  A  L   M      P+++TY ++I G C 
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
            G    A  L + M++  C  N+V +S L+D +C+   +  A  +  EM  +G   SPN+
Sbjct: 188 VGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKG--ISPNI 245

Query: 272 VTYTS-----------------------------------VIQIFCGKGMMKEALGILDR 296
           VTY S                                   V+   C +GM+ EA  ++D 
Sbjct: 246 VTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDM 305

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M   G  PN VT + L+ G C+   +D A ++ D +V    V++   Y++L+    + + 
Sbjct: 306 MIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQS 365

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
           + +A  LF +M    + P+ +  + +I  LC  G++ +   L+ ++   G +   D   +
Sbjct: 366 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIP--DLVTY 423

Query: 417 SVLLLGLCRKNHSVEAAKLAR 437
             L   LC+  H  +A  L +
Sbjct: 424 RTLSDYLCKNRHLDKAMALLK 444



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 147/310 (47%), Gaps = 19/310 (6%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS----VKMM--------KVIFN 137
           ++H + + N   + S+I  +   +  VV+A  +EG V      V MM         V +N
Sbjct: 261 WKHVTTLMNEMVD-SKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYN 319

Query: 138 -LCEKARLANE---AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            L +   L NE   A+ V   M   D   + I YN +I  +C+   +  A  L + M   
Sbjct: 320 ALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQ 379

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +L P+ +TY ++I G C+ GRL+DA  LF  M   G   +LV Y  L D +C+   +++A
Sbjct: 380 ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKA 439

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + LL  +E  G +  P++  YT+++   C  G +++A  +   + + G  PN  T + +I
Sbjct: 440 MALLKAIE--GSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI 497

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C +G L EA +L  ++   G   +   Y+ +    +R        +L  +MLA G  
Sbjct: 498 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFS 557

Query: 374 PDGLACSVMI 383
            D    ++++
Sbjct: 558 VDVSTTTLLV 567



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 3/266 (1%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           YN   +   ++    + + V +    + CV +V     + N   K +  ++AM++  +M 
Sbjct: 318 YNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMS 377

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
             +L P+T+ YN +I   C  G +  A  L   M      PD++TY ++    C    L+
Sbjct: 378 RQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLD 437

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            A  L K ++      ++  Y+ +LDG+CR G +E A +L   +  +G    PNV TY  
Sbjct: 438 KAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG--LQPNVWTYNI 495

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   C +G++ EA  +   M   GC+PN  T + + +GF          +L+++++A G
Sbjct: 496 MIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG 555

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEK 362
             S     ++L+V ++    L ++ K
Sbjct: 556 -FSVDVSTTTLLVGMLSDDGLDQSVK 580



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 133/299 (44%), Gaps = 8/299 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+    +M      P T+ +N ++    +         L + M    + PD+ T   +
Sbjct: 52  DEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIV 111

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I   C+  R++ A      + + G   +   ++ L+ G+C  G +  AL L  +M  EG 
Sbjct: 112 INSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG- 170

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PNVVTY ++I   C  G    A+ +L  ME   C PN V  STLI   C +  + EA
Sbjct: 171 -FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           + +  +++  G   +   Y+SL+  L +    K    L ++M+ S + PD    + ++  
Sbjct: 230 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 289

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC  G V E      D+  +     V+ ++  ++ L+ G C +N    A K+   M+ K
Sbjct: 290 LCKEGMVAEA----HDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHK 344


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 150/305 (49%), Gaps = 11/305 (3%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA  ANE   +   M E     DT  YN VI  FC+ G +  A +L++ M      P ++
Sbjct: 564 KAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVV 623

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY S+I G     RL++A  LF+  K      N+V YS+L+DG  ++G ++ A  +L E+
Sbjct: 624 TYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEEL 683

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            ++G   +PNV T+ S++        + EAL     M+ L C PN+VT   LI G C   
Sbjct: 684 MQKG--LTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVR 741

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
             ++A+    ++   G   S   Y++++  L +   + EA  LF +  A+G  PD    +
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYN 801

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS---VLLLGLCRKNHSVEAAKLAR 437
            MI  L  G + ++ F L+E+  + G        IH+   V+LL    KN  +E A +  
Sbjct: 802 AMIEGLSNGNRAMDAFSLFEETRRRGL------HIHNKTCVVLLDTLHKNDCLEQAAIVG 855

Query: 438 FMLKK 442
            +L++
Sbjct: 856 AVLRE 860



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 173/388 (44%), Gaps = 11/388 (2%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI 106
           E  L+ +  K     VI VL R         I +F W   ++   H    YN    +   
Sbjct: 53  ENALSALNFKPQPEFVIGVLRRL--KDVNRAIEYFRWYERRTELPHCPESYNSLLLVMAR 110

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
            +N   +  ++      G   SV     +   C KA    E   V++ M +F  RP    
Sbjct: 111 CRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSA 170

Query: 167 YNNVIRLFC--EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           Y  +I  F      DM+    L + M  +   P +  + ++I+GF   GR++ A  L   
Sbjct: 171 YTTLIGAFSAVNHSDMMLT--LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDE 228

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           MK     A++V Y+  +D   ++G ++ A +   E+E  G    P+ VTYTS+I + C  
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANG--LKPDEVTYTSMIGVLCKA 286

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             + EA+ + + +E     P     +T+I G+   G  DEAY L+++  A GS+ S   Y
Sbjct: 287 NRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAY 346

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + ++  L +  ++ EA ++F +M      P+    +++I  LC  G++   F L + ++K
Sbjct: 347 NCILTCLRKMGKVDEALRVFEEMKKDAA-PNLSTYNILIDMLCRAGKLDCAFELRDSMQK 405

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            G   +V +   ++++  LC+     EA
Sbjct: 406 AGLFPNVRT--VNIMVDRLCKSQKLDEA 431



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 161/347 (46%), Gaps = 5/347 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  + +G + SV     I     K    +EA+ V  +M + D  P+   YN +I + C
Sbjct: 330 LLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKK-DAAPNLSTYNILIDMLC 388

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G +  A EL   M    L+P++ T   M+   C + +L++AC +F+ M    C  + +
Sbjct: 389 RAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEI 448

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            + +L+DG+ ++G ++ A ++  +M     DC  N + YTS+I+ F   G  ++   I  
Sbjct: 449 TFCSLIDGLGKVGRVDDAYKIYEKMLD--SDCRTNSIVYTSLIKNFFNHGRKEDGHKIYK 506

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M    C+P+   ++T +      G  ++   + +++ +   V     YS L+  L++  
Sbjct: 507 DMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAG 566

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
              E  +LF  M   G   D  A +++I   C  G+V + + L E+++  GF  +V +  
Sbjct: 567 FANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVT-- 624

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +  ++ GL + +   EA  L      KRI L       +++   K G
Sbjct: 625 YGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVG 671



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 145/298 (48%), Gaps = 6/298 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+  RL +EA+ +   + +    P T  YN +I  +   G    A  L++        P
Sbjct: 283 LCKANRL-DEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIP 341

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            +I Y  ++      G++++A  +F+ MK+   A NL  Y+ L+D +CR G ++ A EL 
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALRVFEEMKKDA-APNLSTYNILIDMLCRAGKLDCAFELR 400

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M+K G    PNV T   ++   C    + EA  I ++M+   C P+ +T  +LI G  
Sbjct: 401 DSMQKAG--LFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLG 458

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G +D+AY++ +K++     ++   Y+SL+       R ++  K++  M+     PD  
Sbjct: 459 KVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQ 518

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             +  +  +   G+  +G  ++E+I+   F+   D+  +S+L+ GL +   + E  +L
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVP--DARSYSILIHGLIKAGFANETYEL 574



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 106/251 (42%), Gaps = 37/251 (14%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR-------- 172
           KE+GCV+  +   ++ +   K    N+A  +L +M      P  + Y +VI         
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRL 638

Query: 173 -----LFCEKG------DMIAADELMKGMGLID----------------LYPDIITYVSM 205
                LF E        +++    L+ G G +                 L P++ T+ S+
Sbjct: 639 DEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSL 698

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +     A  + +A   F+ MK   C  N V Y  L++G+C++    +A     EM+K+G 
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG- 757

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+ ++YT++I      G + EA  + DR +A G  P+    + +I+G        +A
Sbjct: 758 -MKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDA 816

Query: 326 YQLIDKVVAGG 336
           + L ++    G
Sbjct: 817 FSLFEETRRRG 827



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 63/149 (42%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E   ++G   +V     + +   KA   NEA+   + M E    P+ + Y  +I   C
Sbjct: 679 ILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLC 738

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +      A    + M    + P  I+Y +MI G   AG + +A  LF   K +G   +  
Sbjct: 739 KVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSA 798

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEG 264
            Y+A+++G+        A  L  E  + G
Sbjct: 799 CYNAMIEGLSNGNRAMDAFSLFEETRRRG 827


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 150/303 (49%), Gaps = 16/303 (5%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R + +A  +L++M E  + PD + YN +I  F ++G    A EL   M   
Sbjct: 296 MIVGFCSSGRWS-DAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPR 354

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ ITY SMI GFC   RL+ A  +F +M   GC+ ++  ++ L+DG C    ++  
Sbjct: 355 GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDG 414

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +ELL EM + G     N VTY ++I  FC  G +  AL +  +M + G  P+ VT +TL+
Sbjct: 415 MELLHEMPRRG--LVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLL 472

Query: 314 KGFCVEGNLDEAYQLI-----DKVVAGGSVSSGG------CYSSLVVELVRTKRLKEAEK 362
            G C  G L +A ++       K+    S    G       Y+ L+  L+   +  EAE+
Sbjct: 473 DGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEE 532

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           L+ +M   G+ PD +  S MI  LC   ++ E   ++  +    F  +V +   + L+ G
Sbjct: 533 LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVT--FNTLING 590

Query: 423 LCR 425
            C+
Sbjct: 591 YCK 593



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 151/298 (50%), Gaps = 16/298 (5%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M    + P+TI YN++I  FC++  + AA+++   M      PD+ T+ ++I
Sbjct: 343 EAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 402

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C A R++D   L   M R G  AN V Y+ L+ G C +G +  AL+L  +M   G  
Sbjct: 403 DGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG-- 460

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----------GCAPNRVTISTLIKG 315
             P++VT  +++   C  G +K+AL +   M+             G  P+ +T + LI G
Sbjct: 461 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICG 520

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
              EG   EA +L +++   G V     YSS++  L +  RL EA ++F  M +    P+
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 580

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            +  + +I   C  G+V +G  L+ ++ + G ++  D+ I+  L+ G  RK  ++  A
Sbjct: 581 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVA--DAIIYITLIYGF-RKVGNINGA 635



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 148/293 (50%), Gaps = 23/293 (7%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC   V     + +    A+  ++ M +L +MP   L  +T+ YN +I  FC  GD+ A
Sbjct: 389 KGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNA 448

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCA 231
           A +L + M    + PDI+T  +++ G C+ G+L+DA  +FK M++           +G  
Sbjct: 449 ALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVE 508

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            +++ Y+ L+ G+   G    A EL  EM   G    P+ +TY+S+I   C +  + EA 
Sbjct: 509 PDVLTYNILICGLINEGKFLEAEELYEEMPHRG--IVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +   M +   +PN VT +TLI G+C  G +D+  +L  ++   G V+    Y +L+   
Sbjct: 567 QMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGF 626

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
            +   +  A  +F +M++SGV PD    ++ IR +      L GF   E++E+
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPD----TITIRNM------LTGFWSKEELER 669



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 152/317 (47%), Gaps = 6/317 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC + R++ EA+    +M E   RP+ + +  ++   C +G ++ A  L+ 
Sbjct: 150 VTFTTLLHGLCVEDRVS-EALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLD 208

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRL 247
            M    L P  ITY +++ G C  G    A  L + M+       N+V YSA++D +C+ 
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    A  L  EM+++G    P++ TY S+I  FC  G   +A  +L  M     +P+ V
Sbjct: 269 GRHSDAQNLFTEMQEKG--IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVV 326

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + LI  F  EG   EA +L D+++  G + +   Y+S++    +  RL  AE +F  M
Sbjct: 327 TYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM 386

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  PD    + +I   C   ++ +G  L  ++ + G +++  +  ++ L+ G C   
Sbjct: 387 ATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVT--YNTLIHGFCLVG 444

Query: 428 HSVEAAKLARFMLKKRI 444
               A  L++ M+   +
Sbjct: 445 DLNAALDLSQQMISSGV 461



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 151/314 (48%), Gaps = 9/314 (2%)

Query: 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           K+M V+  + E+  L    + + +KM    +R D   +N +I+ FC    +  A      
Sbjct: 84  KLMGVVVRM-ERPDLV---ISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGK 139

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           +  + L+PD++T+ +++ G C   R+ +A   F  M    C  N+V ++ L++G+CR G 
Sbjct: 140 ITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGR 199

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-CAPNRVT 308
           +  A+ LL  M ++G    P  +TY +++   C KG    AL +L +ME +    PN V 
Sbjct: 200 IVEAVALLDRMMEDG--LQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVI 257

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S +I   C +G   +A  L  ++   G       Y+S++V    + R  +AE+L  +ML
Sbjct: 258 YSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML 317

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
              + PD +  + +I      G+  E   LY+++   G + +  +  ++ ++ G C+++ 
Sbjct: 318 ERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTIT--YNSMIDGFCKQDR 375

Query: 429 SVEAAKLARFMLKK 442
              A  +   M  K
Sbjct: 376 LDAAEDMFYLMATK 389



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 14/206 (6%)

Query: 138 LCEKARLANEAMWVLRKM-----------PEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           LC+  +L  +A+ + + M           P   + PD + YN +I     +G  + A+EL
Sbjct: 475 LCDNGKL-KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEEL 533

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
            + M    + PD ITY SMI G C   RL++A  +F  M     + N+V ++ L++G C+
Sbjct: 534 YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCK 593

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G ++  LEL  EM + G     + + Y ++I  F   G +  AL I   M + G  P+ 
Sbjct: 594 AGRVDDGLELFCEMGRRG--IVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDT 651

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKV 332
           +TI  ++ GF  +  L+ A  +++ +
Sbjct: 652 ITIRNMLTGFWSKEELERAVAMLEDL 677



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 85/152 (55%), Gaps = 2/152 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +MP   + PDTI Y+++I   C++  +  A ++   MG     P+++T+ ++I
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 588

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C AGR++D   LF  M R G  A+ + Y  L+ G  ++G++  AL++  EM   G  
Sbjct: 589 NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG-- 646

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
             P+ +T  +++  F  K  ++ A+ +L+ ++
Sbjct: 647 VYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 678



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 111/238 (46%), Gaps = 3/238 (1%)

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF     LEDA  LF  M R     ++V +  L+  + R+   +  + L  +ME++   C
Sbjct: 53  GFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRC 112

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             ++ ++  +I+ FC    +  AL    ++  LG  P+ VT +TL+ G CVE  + EA  
Sbjct: 113 --DIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALD 170

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              ++       +   +++L+  L R  R+ EA  L  +M+  G++P  +    ++  +C
Sbjct: 171 FFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC 230

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
             G  +    L   +E++  +   +  I+S ++  LC+     +A  L   M +K I+
Sbjct: 231 KKGDTVSALNLLRKMEEVSHIIP-NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++    +I  LC+++RL +EA  +   M      P+ + +N +I  +C+ G +    EL 
Sbjct: 546 TITYSSMIDGLCKQSRL-DEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELF 604

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             MG   +  D I Y+++I GF   G +  A  +F+ M   G   + +    +L G    
Sbjct: 605 CEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSK 664

Query: 248 GSMERALELLGEMEKEGG 265
             +ERA+ +L +++   G
Sbjct: 665 EELERAVAMLEDLQMSVG 682


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 208/454 (45%), Gaps = 39/454 (8%)

Query: 9   ILSSSVNIKNSKIFALHFTTASPAERFYT---HLQKNPNNIE--------------KTLA 51
             SSS N  +SK  +LHF T   A   +    H+   P+ ++               T+ 
Sbjct: 28  FFSSSQNNFHSK--SLHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVL 85

Query: 52  TVKAKLDSTCV------IEVLHRCFPSQSQMGIRFFIWAAL-----QSSYRHSSFMYNRA 100
           ++  ++DS  V      + +L   F   +++G  F + A +     Q      + +    
Sbjct: 86  SLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGL 145

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   +I +     + + +   +EG   +V     + N   K    + A+ +LR M + + 
Sbjct: 146 CVEGKIGE----ALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNC 201

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD +IY ++I   C+   +  A  L   M    + PDI TY S++   CN    +    
Sbjct: 202 QPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTT 261

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M       ++V +S ++D +C+ G +  A E++  M + G    P+VVTYT+++  
Sbjct: 262 LLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRG--VEPDVVTYTTLMDG 319

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +  M EA+ + D M   G AP+ ++ +TLI G+C    +D+A  L +++     +  
Sbjct: 320 HCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPD 379

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+  L    RL++A  LF +M+A G  PD +  S+++  LC    + E   L +
Sbjct: 380 TKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLK 439

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
            IE      + D  ++++++ G+CR    +EAA+
Sbjct: 440 AIEASNL--NPDIQVYNIIIDGMCRAGE-LEAAR 470



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 161/327 (49%), Gaps = 4/327 (1%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N S  I ++ + ++  C   V +   I +   K R   EA  +  +M    + PD   Y 
Sbjct: 185 NTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYT 244

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           +++   C   +      L+  M    + PD++ + +++   C  G++ +A  +  +M + 
Sbjct: 245 SLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQR 304

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   ++V Y+ L+DG C    M+ A+++   M ++G   +P+V++YT++I  +C    + 
Sbjct: 305 GVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG--FAPDVISYTTLINGYCKIHKID 362

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A+ + + M      P+  T +TL+ G C  G L +A  L  ++VA G +     YS L+
Sbjct: 363 KAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILL 422

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L + + L+EA  L   + AS + PD    +++I  +C  G++     L+ ++   G  
Sbjct: 423 DSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLH 482

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            SV +  +++++ GLC++    EA KL
Sbjct: 483 PSVWT--YNIMIHGLCKRGLLNEANKL 507



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 144/310 (46%), Gaps = 39/310 (12%)

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           NLCE   +      +L +M    + PD +I++ V+   C++G +  A E++  M    + 
Sbjct: 252 NLCEWKHVTT----LLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVE 307

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD++TY +++ G C    +++A  +F +M R G A ++++Y+ L++G C++  +++A+ L
Sbjct: 308 PDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYL 367

Query: 257 LGEM-EKEG------------GDCS--------------------PNVVTYTSVIQIFCG 283
             EM  KE             G C                     P++VTY+ ++   C 
Sbjct: 368 FEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCK 427

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
              ++EA+ +L  +EA    P+    + +I G C  G L+ A  L   + + G   S   
Sbjct: 428 NRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWT 487

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+ ++  L +   L EA KLF +M  +   PDG   + + R      + L    L E++ 
Sbjct: 488 YNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEML 547

Query: 404 KIGFLSSVDS 413
             GF  S DS
Sbjct: 548 ARGF--SADS 555



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 5/173 (2%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWV 151
           +++ MY   C + R++   ++  ++V      G +  +    ++ +   K R   EAM +
Sbjct: 383 YNTLMYG-LCHVGRLQDAIALFHEMVA----RGQMPDLVTYSILLDSLCKNRHLEEAMAL 437

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           L+ +   +L PD  +YN +I   C  G++ AA +L   +    L+P + TY  MI G C 
Sbjct: 438 LKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCK 497

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
            G L +A  LF  M  + C+ +   Y+ +  G  +     RA++LL EM   G
Sbjct: 498 RGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARG 550


>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
 gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
          Length = 445

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 130/256 (50%), Gaps = 2/256 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA L +EA  ++  M         + +N V+   C+ G    A ++M+ M L ++ P+I+
Sbjct: 130 KAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNIL 189

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T   ++  FC A R E+A G+  +M   G    +V ++ALL+  C    M+ A +LL  M
Sbjct: 190 TLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETM 249

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
                 C PN VTY+ ++Q F   G M EA   L+++   G APN +  +  + G C  G
Sbjct: 250 AH--SKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTG 307

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            +D A + +  +   G  ++   Y+SLV    +  R+ EAE++  +M+A G  PD    S
Sbjct: 308 EMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYS 367

Query: 381 VMIRELCLGGQVLEGF 396
           V+I+ LC  GQ+   F
Sbjct: 368 VLIQGLCSAGQIEHAF 383



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 3/200 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C+ AR   EA+ +   M E    P  + +N ++ LFC    M +A +L++ M   
Sbjct: 194 ILHAFCKAAR-PEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETMAHS 252

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+ +TY  M++ F   GR+ +A    + +   G A NL+  +A + G+C+ G M+ A
Sbjct: 253 KCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLA 312

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
              L  M +EG  C  N  TY S+++ FC  G M EA  +L+ M A G  P+  T S LI
Sbjct: 313 SRFLTVMAEEG--CRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLI 370

Query: 314 KGFCVEGNLDEAYQLIDKVV 333
           +G C  G ++ A+ ++ +V 
Sbjct: 371 QGLCSAGQIEHAFMVMLQVT 390



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 154/319 (48%), Gaps = 9/319 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTII--YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           +EA  ++ +  +  + P +++  +N +++ F E G     DE    +  +D  P+ ++Y 
Sbjct: 31  DEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAG---FVDEAKSHLHRMDCKPNSVSYN 87

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++I   C++GR+++A    + M + G A N V Y+A+  G+ + G ++ A EL+G ME  
Sbjct: 88  TLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMESA 147

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G   +   VT+  V++  C  G   EA  +++ M      PN +T++ ++  FC     +
Sbjct: 148 G--FALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLILHAFCKAARPE 205

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           EA  + D +V  G   +   +++L+     T ++  A KL   M  S  KP+ +  S+M+
Sbjct: 206 EALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPNFVTYSIMV 265

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           ++    G+++E     E +   G+  ++   + +  + GLC+      A++    M ++ 
Sbjct: 266 QKFAEMGRMVEARAFLEQLVVCGYAPNL--LVCNAYVAGLCKTGEMDLASRFLTVMAEEG 323

Query: 444 IWLQGPYVDKIVEHLKKSG 462
                   + +VE   K G
Sbjct: 324 CRANTATYNSLVEGFCKLG 342



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 9/246 (3%)

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELL 257
            TY +++ G C AG  ++A  L +  K  G +    +V ++ +L G    G ++ A   L
Sbjct: 15  FTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKSHL 74

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M     DC PN V+Y ++I   C  G ++EA   L  M   G APNRVT + +  G  
Sbjct: 75  HRM-----DCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLG 129

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G LDEA++L+  + + G   +   ++ +V  L ++ R  EA K+   ML   ++P+ L
Sbjct: 130 KAGLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNIL 189

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             ++++   C   +  E   + + + ++GF  ++ +   + LL   C  +    AAKL  
Sbjct: 190 TLNLILHAFCKAARPEEALGMTDIMVEMGFCPTIVT--FNALLELFCNTDQMDSAAKLLE 247

Query: 438 FMLKKR 443
            M   +
Sbjct: 248 TMAHSK 253



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 4/189 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A  +L  M     +P+ + Y+ +++ F E G M+ A   ++ + +    P+++   + 
Sbjct: 240 DSAAKLLETMAHSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAY 299

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + G C  G ++ A     VM   GC AN   Y++L++G C+LG M+ A  +L EM  EG 
Sbjct: 300 VAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGS 359

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGI-LDRMEALGCA-PNRVTISTLIKGFCVEGNLD 323
              P+  TY+ +IQ  C  G ++ A  + L    A+  A P+  T   LI+  C  G +D
Sbjct: 360 --LPDSTTYSVLIQGLCSAGQIEHAFMVMLQVTRAVESARPDPATFVKLIEKLCELGEMD 417

Query: 324 EAYQLIDKV 332
            A  +++++
Sbjct: 418 RAALVLERM 426



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 12/137 (8%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           +  LC+   + + A   L  M E   R +T  YN+++  FC+ G M  A+ +++ M    
Sbjct: 300 VAGLCKTGEM-DLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEG 358

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----HGCAANLVAYSALLDGICRLGS 249
             PD  TY  +I+G C+AG++E A   F VM +          +   +  L++ +C LG 
Sbjct: 359 SLPDSTTYSVLIQGLCSAGQIEHA---FMVMLQVTRAVESARPDPATFVKLIEKLCELGE 415

Query: 250 MERA---LELLGEMEKE 263
           M+RA   LE +G+  +E
Sbjct: 416 MDRAALVLERMGDEHEE 432


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 154/316 (48%), Gaps = 5/316 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ +  +M E    P+ + YN +I   C  G M  A  +   M      P++ TY ++I
Sbjct: 337 EALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALI 396

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GF  AG L  A  ++  M  +GC  N+V Y+++++ +CR     +A  L+ +M  +  +
Sbjct: 397 DGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTD--N 454

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PN VT+ + I+  C  G ++ A+ +  +ME  GC+PN  T + ++ G   E  + EA 
Sbjct: 455 CPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEAL 514

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+ ++   G   +   Y+++        + +EA KL  KML  GVKPD +  + +    
Sbjct: 515 ELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAY 574

Query: 387 CLGGQVLEGFCLYEDIEKIG-FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           C+ G+V     L + +   G ++  V +  ++ LL G+C +    EA      ML + I 
Sbjct: 575 CMQGKVKTAIQLLDKLSAGGKWVPEVAA--YTSLLWGICNQIGVEEAVLYLDKMLNEGIC 632

Query: 446 LQGPYVDKIVEHLKKS 461
           L     + +V  L  S
Sbjct: 633 LNAATWNALVRGLFNS 648



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 144/274 (52%), Gaps = 3/274 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V    +  GC  +V     + +   KA     A  +  KM      P+ ++Y +++ +
Sbjct: 374 VSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNV 433

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C       A  L++ M   +  P+ +T+ + IKG C +GR+E A  LF  M+++GC+ N
Sbjct: 434 LCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPN 493

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+ +LDG+ +   ++ ALEL+ EME++G +   N+VTY ++   FC  G  +EAL +
Sbjct: 494 IKTYNEVLDGLLKENRIKEALELVTEMEEKGMEL--NLVTYNTIFGGFCNVGKFEEALKL 551

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-VSSGGCYSSLVVELV 352
           L +M   G  P+ +T +TL   +C++G +  A QL+DK+ AGG  V     Y+SL+  + 
Sbjct: 552 LGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGIC 611

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
               ++EA     KML  G+  +    + ++R L
Sbjct: 612 NQIGVEEAVLYLDKMLNEGICLNAATWNALVRGL 645



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 142/283 (50%), Gaps = 4/283 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            +P+  +YN +I  FC +  +     L+  M    + P++ITY ++I      G +E A 
Sbjct: 245 FQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELAL 304

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            ++  M   GC+ N+  +++L+ G    G +  AL +   M +EG +  PNVV Y ++I 
Sbjct: 305 AVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFE--PNVVAYNTLIH 362

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G M EA+ +  +ME  GC+PN  T   LI GF   G+L  A ++ +K++  G + 
Sbjct: 363 GLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIP 422

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+S+V  L R+    +A  L  KM      P+ +  +  I+ LC  G+V     L+
Sbjct: 423 NVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLF 482

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             +E+ G   S +   ++ +L GL ++N   EA +L   M +K
Sbjct: 483 CQMEQYG--CSPNIKTYNEVLDGLLKENRIKEALELVTEMEEK 523



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 181/406 (44%), Gaps = 25/406 (6%)

Query: 42  NPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN--- 98
           NP N       +K  +  + V+  L     +   +   +F   A   +++H+   Y    
Sbjct: 29  NPGNKPPEYQEIKTPIKESDVVMRLRT--ETDIVLASNYFRSIANSKAFQHTQLTYQIMI 86

Query: 99  ----RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
               R C++  ++        +++  K EG   S  +   + N   +  LA +A+ +  +
Sbjct: 87  EKLGRECDVDGVQY-------LLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYR 139

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           + EF  +P   IYN+++     +      + +   M      P++ TY  ++K  C   R
Sbjct: 140 IREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNR 199

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           ++ AC L   M   GC  ++V+Y+ ++  + +LG +E A EL    +       PNV  Y
Sbjct: 200 VDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQ-------PNVSVY 252

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            ++I  FC +  +KE   +L +M   G  PN +T ST+I      GN++ A  +  K+  
Sbjct: 253 NALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFV 312

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G   +   ++SL+       R+ EA  ++++M   G +P+ +A + +I  LC  G++ E
Sbjct: 313 RGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGE 372

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
              +   +E+ G   +V +  +  L+ G  +    V A+++   M+
Sbjct: 373 AVSVSSKMERNGCSPNVST--YGALIDGFAKAGDLVGASEIWNKMM 416


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 168/357 (47%), Gaps = 40/357 (11%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++++  + EGC  +     VI +   +    ++A  +L  +P    +P+T+ YN V++ 
Sbjct: 218 LELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKG 277

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC     + ADE++  M   +  P+  T   +I   C  G L+      + M +HGC AN
Sbjct: 278 FCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTAN 337

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV---------------- 277
           +V Y+A++ G+C  G+++ ALELL  M+  G  C P++VTY +V                
Sbjct: 338 VVTYNAVISGMCEQGNVDSALELLSNMQSFG--CKPDIVTYNTVLKGLCSADRWEDAEEL 395

Query: 278 -------------------IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
                              I  +C KG++ +A  +  +M   GC PN  T ST+I G   
Sbjct: 396 MIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTK 455

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G +++A +L++++   G  ++   Y  L   L +  +++E  ++  K+  SG+ P  + 
Sbjct: 456 AGKMEQALELLNEMANKG-FNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVL 514

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            + ++  LC  G+      +  D+   G +   D   + +L+ GL  + +S EA +L
Sbjct: 515 YNTVLLGLCRNGKTDYAIDVLADMVSCGCMP--DESTYIILIEGLFYEGYSKEAREL 569



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 170/361 (47%), Gaps = 11/361 (3%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI 106
           E T AT  A +D  C   +L      +   G+   + A+  S+Y H+  ++   CE  R+
Sbjct: 125 EATAATYGALVDGYCRAGLLEDA--RRVVGGMPAHVQAS--SAYAHNPLIH-ALCERGRV 179

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
                  + V++     GC   V    ++     K R   +A+ ++  M      P+ + 
Sbjct: 180 AD----ALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVT 235

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +I   C +GD+  A EL+  +      P+ + Y +++KGFC+  R  DA  +   M 
Sbjct: 236 YNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMV 295

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           R  C  N    + +++ +CR G +++    L +M K G  C+ NVVTY +VI   C +G 
Sbjct: 296 RENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHG--CTANVVTYNAVISGMCEQGN 353

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +  AL +L  M++ GC P+ VT +T++KG C     ++A +L+ K+     +     +++
Sbjct: 354 VDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNT 413

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++    +   + +A ++F +M   G  P+    S +I  L   G++ +   L  ++   G
Sbjct: 414 IISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKG 473

Query: 407 F 407
           F
Sbjct: 474 F 474



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 148/281 (52%), Gaps = 13/281 (4%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII--TYVSMIKGFCNAGRLEDAC 219
           PD  + N ++R  C +G    A  +++  G     P+    TY +++ G+C AG LEDA 
Sbjct: 94  PDVPLANRLVRDLCRRGRPADAARVVEACG-----PEATAATYGALVDGYCRAGLLEDAR 148

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +   M  H  A++  A++ L+  +C  G +  AL +L  M   G  C+P+VVTY  ++Q
Sbjct: 149 RVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRG--CAPDVVTYNILLQ 206

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C     ++AL ++D M A GC PN VT + +I   C EG++D+A +L++ + + G   
Sbjct: 207 AACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKP 266

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y++++      +R  +A+++  +M+     P+    +V+I  LC  G +L+   LY
Sbjct: 267 NTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKG-LLQKVTLY 325

Query: 400 -EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            E + K G  ++V +  ++ ++ G+C + +   A +L   M
Sbjct: 326 LEKMSKHGCTANVVT--YNAVISGMCEQGNVDSALELLSNM 364



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 127/262 (48%), Gaps = 5/262 (1%)

Query: 117 VEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +E   + GC  +V     VI  +CE+  + + A+ +L  M  F  +PD + YN V++  C
Sbjct: 326 LEKMSKHGCTANVVTYNAVISGMCEQGNV-DSALELLSNMQSFGCKPDIVTYNTVLKGLC 384

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
                  A+ELM  M   D  PD  T+ ++I  +C  G +  A  +FK M   GC  N  
Sbjct: 385 SADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNST 444

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS ++ G+ + G ME+ALELL EM  +G +       Y  + +    +  ++E + ++ 
Sbjct: 445 TYSTIIGGLTKAGKMEQALELLNEMANKGFNTDK---MYRVLTESLNKEDKIEEVVQVVH 501

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +++  G +P  V  +T++ G C  G  D A  ++  +V+ G +     Y  L+  L    
Sbjct: 502 KLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEG 561

Query: 356 RLKEAEKLFSKMLASGVKPDGL 377
             KEA +L S++ +  V  + L
Sbjct: 562 YSKEARELLSRLCSRDVLSNSL 583


>gi|48716454|dbj|BAD23061.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           [Oryza sativa Japonica Group]
          Length = 580

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 155/314 (49%), Gaps = 10/314 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V +     G  ++  +   + ++C KA  A  A  ++ +M    +  D   +N VI L+C
Sbjct: 167 VFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYC 226

Query: 176 EKG---DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            KG   + +   E M+  G   +  D++T+ S+I G C   R+++A  L + M   G A 
Sbjct: 227 RKGMQYEAMCVRERMENQG---VKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAP 283

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           + V Y+ L+DG CR G +E A++L GEME  G    P V TY ++++  C  G MKE   
Sbjct: 284 DHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMG--MLPGVATYNAILRKLCEDGKMKEVNV 341

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L+ M+      + VT +TLI  +C  G++  A ++  +++  G       Y +LV    
Sbjct: 342 LLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFC 401

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           + K L EA++   +M+ +G  P+    S ++  LC     +    + +++ K GF    D
Sbjct: 402 KAKELDEAKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGF--PPD 459

Query: 413 SDIHSVLLLGLCRK 426
             ++  L+  LC+K
Sbjct: 460 KAVYRSLIRRLCKK 473



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 125/271 (46%), Gaps = 3/271 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++ R+  EA  +LR+M    + PD + Y  ++  +C  GD+  A +L   M  +
Sbjct: 256 LIHGLCKERRV-KEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAM 314

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P + TY ++++  C  G++++   L   M      A+ V  + L++  C+ G M  A
Sbjct: 315 GMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSA 374

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L++   M + G     +  TY +++  FC    + EA   L  M   G +PN   +S ++
Sbjct: 375 LKVKRRMMESGLQL--DQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYSVLSWIV 432

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C + N      + D+++  G       Y SL+  L +   +  A  +F++M   G++
Sbjct: 433 DGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAGNVFNEMQGKGLE 492

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
            D L  + +       G+ +    +  ++ K
Sbjct: 493 ADCLVYATLACAYLTAGKPVAALDILNEMAK 523



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 37/230 (16%)

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN----------------------- 305
           P+    ++++       M   A  + D+M   G A N                       
Sbjct: 143 PDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESL 202

Query: 306 ------------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
                       R + +T+I  +C +G   EA  + +++   G  +    ++SL+  L +
Sbjct: 203 MTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCK 262

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            +R+KEA +L  +M  +GV PD +  + ++   C  G + E   L  ++E +G L  V +
Sbjct: 263 ERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVAT 322

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             ++ +L  LC      E   L   M ++++       + ++    K GD
Sbjct: 323 --YNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGD 370


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 159/325 (48%), Gaps = 14/325 (4%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+GC   V     + N LC + R+  EA  ++ +M E   +P+ + Y  ++   C+ GD 
Sbjct: 3   EKGCQHDVVAFNTLMNGLCREGRVL-EAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDT 61

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
            +A  L++ M    +  D++ Y ++I   C  G    A  LF  M   G   N++ Y+ +
Sbjct: 62  DSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCM 121

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG C  G    A +LL +M +   D  P+VVT+ ++I  F  +G + EA  +   M   
Sbjct: 122 IDGCCSYGKWTDAEQLLRDMIESNVD--PDVVTFNALINAFVKEGKISEAEELYREMLGR 179

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
              P+ +T ++LI GFC    LD+A  + D +V+ G   +    ++L+    R KR+ + 
Sbjct: 180 NIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDG 239

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            KL  +ML  G+ PD ++ + +I   C  G +     L++++          S +  +L+
Sbjct: 240 IKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMI---------SQVRWILI 290

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIW 445
           L L   + S+E A++ R+  K  IW
Sbjct: 291 LLLITSSSSMECARVIRWT-KHGIW 314



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 140/292 (47%), Gaps = 4/292 (1%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E   + D + +N ++   C +G ++ A+ L+  M      P+ +TY +++ G C  G 
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            + A  L + M      A++V Y+A++D +C+ G   +A  L  EM  +G    PNV+TY
Sbjct: 61  TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKG--IFPNVLTY 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +I   C  G   +A  +L  M      P+ VT + LI  F  EG + EA +L  +++ 
Sbjct: 119 NCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLG 178

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                    Y+SL+    +  RL +A+ +F  M++ G  P+ +  + +I   C   +V +
Sbjct: 179 RNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDD 238

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           G  L  ++ + G +   DS  ++ L+ G C+      A  L + M+ +  W+
Sbjct: 239 GIKLLHEMLRRGLVP--DSVSYNTLIHGFCQAGDLNAAQDLFQEMISQVRWI 288


>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
          Length = 332

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 149/294 (50%), Gaps = 14/294 (4%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRP----------DTIIYNNV 170
           E GC  +V     + N LC + R+  EA+ ++ +M E   +P          D +I   +
Sbjct: 3   ETGCRPNVVTFNTLMNSLCREGRVL-EALALVDRMVEEGHQPNAMGQSHIKADVVISTAI 61

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +   C+ G+ I A  L   M    ++P+++TY  MI  FC++GR  DA  L + M     
Sbjct: 62  VDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQI 121

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             ++V +SAL++   +   +  A E+  EM +      P  +TY S+I  FC +  + +A
Sbjct: 122 NPDIVTFSALINAFVKERKVSEAEEIYKEMLR--WSIFPTTITYNSMIDGFCKQDRVDDA 179

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             +LD M + GC+P+ VT STLI G+C    +D   ++  ++   G V++   Y++L+  
Sbjct: 180 KRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHG 239

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
             +   L  A+ L ++M++ GV PD +    M+  LC   ++ + F + ED++K
Sbjct: 240 FCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQK 293



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 123/241 (51%), Gaps = 3/241 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC+     N A  +  +M E  + P+ + YN +I  FC  G    AD+L++ M   
Sbjct: 61  IVDRLCKDGNHIN-AQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEK 119

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PDI+T+ ++I  F    ++ +A  ++K M R       + Y++++DG C+   ++ A
Sbjct: 120 QINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDA 179

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +L  M  +G  CSP+VVT++++I  +C    +   + I   M   G   N VT +TLI
Sbjct: 180 KRMLDSMASKG--CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLI 237

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GFC  G+LD A  L++++++ G       +  ++  L   K L++A  +   +  S V 
Sbjct: 238 HGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQKSEVC 297

Query: 374 P 374
           P
Sbjct: 298 P 298



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 98/180 (54%), Gaps = 6/180 (3%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K R  +EA  + ++M  + + P TI YN++I  FC++  +  A  ++  M      PD++
Sbjct: 137 KERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVV 196

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T+ ++I G+C A R+++   +F  M R G  AN V Y+ L+ G C++G ++ A +LL EM
Sbjct: 197 TFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEM 256

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV----TISTLIKGF 316
              G   +P+ +T+  ++   C K  +++A  IL+ ++     P  +    ++ + I GF
Sbjct: 257 ISCG--VAPDYITFHCMLAGLCSKKELRKAFAILEDLQKSEVCPRLIFFLFSLCSFILGF 314



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 116/239 (48%), Gaps = 14/239 (5%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG----------CAANLVAYSALLDGICR 246
           P+++T+ +++   C  GR+ +A  L   M   G            A++V  +A++D +C+
Sbjct: 8   PNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRLCK 67

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G+   A  L  EM ++G    PNV+TY  +I  FC  G   +A  +L  M      P+ 
Sbjct: 68  DGNHINAQNLFTEMHEKG--IFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDI 125

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT S LI  F  E  + EA ++  +++      +   Y+S++    +  R+ +A+++   
Sbjct: 126 VTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDS 185

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           M + G  PD +  S +I   C   +V  G  ++ ++ + G +++  +  ++ L+ G C+
Sbjct: 186 MASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVT--YTTLIHGFCQ 242



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 14/211 (6%)

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----------VVTY 274
           M   GC  N+V ++ L++ +CR G +  AL L+  M +EG    PN          VV  
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGH--QPNAMGQSHIKADVVIS 58

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           T+++   C  G    A  +   M   G  PN +T + +I  FC  G   +A QL+  ++ 
Sbjct: 59  TAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIE 118

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                    +S+L+   V+ +++ EAE+++ +ML   + P  +  + MI   C   +V +
Sbjct: 119 KQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDD 178

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
              + + +   G   S D    S L+ G C+
Sbjct: 179 AKRMLDSMASKG--CSPDVVTFSTLINGYCK 207



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 5/155 (3%)

Query: 83  WAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142
           W+   ++  ++S M +  C+  R+     ++    ++   +GC   V     + N   KA
Sbjct: 154 WSIFPTTITYNS-MIDGFCKQDRVDDAKRML----DSMASKGCSPDVVTFSTLINGYCKA 208

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           +  +  M +  +M    +  +T+ Y  +I  FC+ GD+ AA +L+  M    + PD IT+
Sbjct: 209 KRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITF 268

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
             M+ G C+   L  A  + + +++      L+ +
Sbjct: 269 HCMLAGLCSKKELRKAFAILEDLQKSEVCPRLIFF 303



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 18/162 (11%)

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M   GC PN VT +TL+   C EG + EA  L+D++V  G   +    S +  ++V +  
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 357 LKE----------AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED-IEKI 405
           + +          A+ LF++M   G+ P+ L  + MI   C  G+  +   L    IEK 
Sbjct: 61  IVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEK- 119

Query: 406 GFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
                ++ DI   S L+    ++    EA ++ + ML+  I+
Sbjct: 120 ----QINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIF 157


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 138/308 (44%), Gaps = 38/308 (12%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           KE G V        + ++  K   A+EA+W L+   E   R D + Y+ ++   C++G M
Sbjct: 375 KEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRM 434

Query: 181 IAADELMKGM-GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
             A +L+  M       PD++TY +++ GFC  G ++ A  L +VM  HG   N V+Y+A
Sbjct: 435 SEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTA 494

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV---------------------- 277
           LL+G+CR G    A E++   E+     SPN +TY+ +                      
Sbjct: 495 LLNGMCRTGKSLEAREMMNMSEEHW--WSPNSITYSVIMHGLRREGKLSEACDVVREMVL 552

Query: 278 -------------IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
                        +Q  C  G   EA   ++     GCA N V  +T+I GFC    LD 
Sbjct: 553 KGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDA 612

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  ++D +      +    Y++LV  L +  R+ EA +L  KML  G+ P  +    +I 
Sbjct: 613 ALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIH 672

Query: 385 ELCLGGQV 392
             C  G+V
Sbjct: 673 RYCQMGKV 680



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 184/379 (48%), Gaps = 11/379 (2%)

Query: 75  QMGIRFFIWAALQSSYRHSSFMYNRACEM---SRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           ++ ++FF WA  Q  YRH   +Y    E+   +++ Q    ++ ++   K  G   + + 
Sbjct: 188 RVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLM---KRRGIYRTPEA 244

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
              +     +A    +A+ VL  M    + P+ +I N  I +F     +  A   ++ M 
Sbjct: 245 FSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQ 304

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           ++ + P+++TY  MI+G+C+  R+E+A  L + M   GC  + V+Y  ++  +C+   + 
Sbjct: 305 VVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIV 364

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
              +L+ +M KE G   P+ VTY ++I +        EAL  L   +  G   +++  S 
Sbjct: 365 EVRDLMKKMAKEHG-LVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSA 423

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           ++   C EG + EA  LI+++++ G        Y+++V    R   + +A+KL   M   
Sbjct: 424 IVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTH 483

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G KP+ ++ + ++  +C  G+ LE   +    E+  +  S +S  +SV++ GL R+    
Sbjct: 484 GHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWW--SPNSITYSVIMHGLRREGKLS 541

Query: 431 EAAKLARFMLKKRIWLQGP 449
           EA  + R M+ K  +  GP
Sbjct: 542 EACDVVREMVLKG-FFPGP 559



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 163/347 (46%), Gaps = 12/347 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMP-EF 158
           C++ R+++     I+++E    +GC+   V    ++  LC++ R+  E   +++KM  E 
Sbjct: 323 CDLHRVEE----AIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIV-EVRDLMKKMAKEH 377

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            L PD + YN +I +  +      A   +K         D + Y +++   C  GR+ +A
Sbjct: 378 GLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEA 437

Query: 219 CGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
             L   M   G C  ++V Y+A+++G CRLG +++A +LL  M   G    PN V+YT++
Sbjct: 438 KDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGH--KPNTVSYTAL 495

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +   C  G   EA  +++  E    +PN +T S ++ G   EG L EA  ++ ++V  G 
Sbjct: 496 LNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGF 555

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
                  + L+  L R  R  EA K   + L  G   + +  + +I   C   ++     
Sbjct: 556 FPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALS 615

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + +D+  I      D   ++ L+  L +K    EA +L + ML K I
Sbjct: 616 VLDDMYLIN--KHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGI 660



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 119/255 (46%), Gaps = 14/255 (5%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM-----KGMGLIDLYPDII 200
           +EA  V+R+M      P  +  N +++  C  G    A + M     KG  +     +++
Sbjct: 541 SEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAI-----NVV 595

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            + ++I GFC    L+ A  +   M      A++  Y+ L+D + + G +  A EL+ +M
Sbjct: 596 NFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKM 655

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G D +P  VTY +VI  +C  G + + + IL++M  +     R   + +I+  CV G
Sbjct: 656 LHKGIDPTP--VTYRTVIHRYCQMGKVDDLVAILEKM--ISRQKCRTIYNQVIEKLCVLG 711

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            L+EA  L+ KV+   S S      +L+   ++      A K+  +M    + PD   C 
Sbjct: 712 KLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIPDVKMCE 771

Query: 381 VMIRELCLGGQVLEG 395
            + + L L G+V E 
Sbjct: 772 KLSKRLVLKGKVDEA 786



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 98/216 (45%), Gaps = 5/216 (2%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           + + +  VI  FC+  ++ AA  ++  M LI+ + D+ TY +++      GR+ +A  L 
Sbjct: 593 NVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELM 652

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           K M   G     V Y  ++   C++G ++  + +L +M      C      Y  VI+  C
Sbjct: 653 KKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISR-QKCR---TIYNQVIEKLC 708

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G ++EA  +L ++       +  T   L++G+  +G    AY++  ++     +    
Sbjct: 709 VLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVACRMFNRNLIPDVK 768

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASG-VKPDGL 377
               L   LV   ++ EA+KL  +++  G + P  L
Sbjct: 769 MCEKLSKRLVLKGKVDEADKLMLRLVERGHISPQSL 804


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 157/307 (51%), Gaps = 12/307 (3%)

Query: 148 AMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           A+ +LRKM E   ++P+ +IY+ +I   C+ G    +  L   M    ++P+I+TY  MI
Sbjct: 236 ALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMI 295

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC +GR   A  L + M     + N+V Y+AL++   + G    A EL  EM   G  
Sbjct: 296 GGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG-- 353

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PN +TY S+I  FC +  +  A  +   M   GC+P+  T +TLI G+C    +D+  
Sbjct: 354 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM 413

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+ ++   G V++   Y++L+        L  A  L  +M++SGV PD + C+ ++  L
Sbjct: 414 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 473

Query: 387 CLGGQVLEGFCLYE-------DIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLAR 437
           C  G++ +   +++       D++     + V+ D+  +++L+ GL  +   +EA +L  
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYE 533

Query: 438 FMLKKRI 444
            M  + I
Sbjct: 534 EMPHRGI 540



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 147/299 (49%), Gaps = 15/299 (5%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  +L++M E  + P+ + YN +I  F ++G    A EL   M    + P+ ITY SMI 
Sbjct: 307 AQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 366

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC   RL+ A  +F +M   GC+ ++  ++ L+DG C    ++  +ELL EM + G   
Sbjct: 367 GFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRG--L 424

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             N VTY ++I  FC  G +  AL +  +M + G  P+ VT +TL+ G C  G L +A +
Sbjct: 425 VANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 484

Query: 328 LI-----DKVVAGGSVSSGG------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           +       K+    S    G       Y+ L+  L+   +  EAE+L+ +M   G+ PD 
Sbjct: 485 MFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDT 544

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +  S MI  LC   ++ E   ++  +    F  +V +   + L+ G C+     +  +L
Sbjct: 545 ITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVT--FNTLINGYCKAGRVDDGLEL 601



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 151/298 (50%), Gaps = 16/298 (5%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M    + P+TI YN++I  FC++  + AA+++   M      PD+ T+ ++I
Sbjct: 341 EAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 400

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C A R++D   L   M R G  AN V Y+ L+ G C +G +  AL+L  +M   G  
Sbjct: 401 DGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG-- 458

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----------GCAPNRVTISTLIKG 315
             P++VT  +++   C  G +K+AL +   M+             G  P+ +T + LI G
Sbjct: 459 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICG 518

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
              EG   EA +L +++   G V     YSS++  L +  RL EA ++F  M +    P+
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            +  + +I   C  G+V +G  L+ ++ + G ++  D+ I+  L+ G  RK  ++  A
Sbjct: 579 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVA--DAIIYITLIYGF-RKVGNINGA 633



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 148/293 (50%), Gaps = 23/293 (7%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC   V     + +    A+  ++ M +L +MP   L  +T+ YN +I  FC  GD+ A
Sbjct: 387 KGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNA 446

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCA 231
           A +L + M    + PDI+T  +++ G C+ G+L+DA  +FK M++           +G  
Sbjct: 447 ALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVE 506

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            +++ Y+ L+ G+   G    A EL  EM   G    P+ +TY+S+I   C +  + EA 
Sbjct: 507 PDVLTYNILICGLINEGKFLEAEELYEEMPHRG--IVPDTITYSSMIDGLCKQSRLDEAT 564

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +   M +   +PN VT +TLI G+C  G +D+  +L  ++   G V+    Y +L+   
Sbjct: 565 QMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGF 624

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
            +   +  A  +F +M++SGV PD    ++ IR +      L GF   E++E+
Sbjct: 625 RKVGNINGALDIFQEMISSGVYPD----TITIRNM------LTGFWSKEELER 667



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 150/317 (47%), Gaps = 10/317 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC   R++ EA+ +  ++     RPD + +  ++   C +G ++ A  L+ 
Sbjct: 152 VTFTTLLHGLCLDHRVS-EALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAVALLD 206

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRL 247
            M    L PD ITY + + G C  G    A  L + M+       N+V YSA++DG+C+ 
Sbjct: 207 RMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKD 266

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    +  L  EM+ +G    PN+VTY  +I  FC  G    A  +L  M     +PN V
Sbjct: 267 GRHSDSHNLFIEMQDKG--IFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVV 324

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + LI  F  EG   EA +L D+++  G + +   Y+S++    +  RL  AE +F  M
Sbjct: 325 TYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM 384

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  PD    + +I   C   ++ +G  L  ++ + G +++  +  ++ L+ G C   
Sbjct: 385 ATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVT--YNTLIHGFCLVG 442

Query: 428 HSVEAAKLARFMLKKRI 444
               A  L++ M+   +
Sbjct: 443 DLNAALDLSQQMISSGV 459



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 119/266 (44%), Gaps = 32/266 (12%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI------ 206
           +KM    +R D   +  +I+ FC    +  A      +  + L+PD++T+ +++      
Sbjct: 105 QKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLD 164

Query: 207 -------------------------KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
                                     G C  GR+ +A  L   M  +G   + + Y   +
Sbjct: 165 HRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFV 224

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG+C++G    AL LL +ME E     PNVV Y+++I   C  G   ++  +   M+  G
Sbjct: 225 DGMCKMGDTVSALNLLRKME-EISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKG 283

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN VT + +I GFC+ G    A +L+ +++      +   Y++L+   V+  +  EA 
Sbjct: 284 IFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA 343

Query: 362 KLFSKMLASGVKPDGLACSVMIRELC 387
           +L+ +ML  G+ P+ +  + MI   C
Sbjct: 344 ELYDEMLPRGIIPNTITYNSMIDGFC 369



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 142/288 (49%), Gaps = 17/288 (5%)

Query: 162 PDTIIYNN----VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           P  I +N     V+R+  E+ D++ +  L + M    +  DI ++  +IK FC+  +L  
Sbjct: 79  PSVIDFNKLMGAVVRM--ERPDLVIS--LYQKMERKQIRCDIYSFTILIKCFCSCSKLPF 134

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A   F  + + G   ++V ++ LL G+C    +  AL+L  ++      C P+V+T+T++
Sbjct: 135 ALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI------CRPDVLTFTTL 188

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +   C +G + EA+ +LDRM   G  P+++T  T + G C  G+   A  L+ K+     
Sbjct: 189 MNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISH 248

Query: 338 VSSGGC-YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
           +      YS+++  L +  R  ++  LF +M   G+ P+ +  + MI   C+ G+     
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            L +++ +     +V +  ++ L+    ++    EAA+L   ML + I
Sbjct: 309 RLLQEMLERKISPNVVT--YNALINAFVKEGKFFEAAELYDEMLPRGI 354



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 14/206 (6%)

Query: 138 LCEKARLANEAMWVLRKM-----------PEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           LC+  +L  +A+ + + M           P   + PD + YN +I     +G  + A+EL
Sbjct: 473 LCDNGKL-KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEEL 531

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
            + M    + PD ITY SMI G C   RL++A  +F  M     + N+V ++ L++G C+
Sbjct: 532 YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCK 591

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G ++  LEL  EM + G     + + Y ++I  F   G +  AL I   M + G  P+ 
Sbjct: 592 AGRVDDGLELFCEMGRRG--IVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDT 649

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKV 332
           +TI  ++ GF  +  L+ A  +++ +
Sbjct: 650 ITIRNMLTGFWSKEELERAVAMLEDL 675



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 85/152 (55%), Gaps = 2/152 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +MP   + PDTI Y+++I   C++  +  A ++   MG     P+++T+ ++I
Sbjct: 527 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 586

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C AGR++D   LF  M R G  A+ + Y  L+ G  ++G++  AL++  EM   G  
Sbjct: 587 NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG-- 644

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
             P+ +T  +++  F  K  ++ A+ +L+ ++
Sbjct: 645 VYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 4/135 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S M +  C+ SR+ +   + +    +   +    +V     + N   KA   ++ + +  
Sbjct: 548 SSMIDGLCKQSRLDEATQMFV----SMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFC 603

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M    +  D IIY  +I  F + G++  A ++ + M    +YPD IT  +M+ GF +  
Sbjct: 604 EMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKE 663

Query: 214 RLEDACGLFKVMKRH 228
            LE A  + + ++R+
Sbjct: 664 ELERAVAMLEDLQRY 678



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           +L  A   F K+   G+ PD +  + ++  LCL  +V E   L+  I +   L+      
Sbjct: 131 KLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLT------ 184

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            + L+ GLCR+   VEA  L   M++  +          V+ + K GD     NL
Sbjct: 185 FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNL 239


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 143/289 (49%), Gaps = 16/289 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KV+  LC  +++   A  +  +M    L  D   Y  ++  FC+ G +  A +    M  
Sbjct: 488 KVLGYLCNASKM-ELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   P+++TY ++I  +  A ++  A  LF+ M   GC  N+V YSAL+DG C+ G ME+
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEK 606

Query: 253 ALELLGEM--EKEGGDCS-------------PNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           A ++   M   K+  D               PNVV Y +++  FC    ++EA  +LD M
Sbjct: 607 ACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAM 666

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
              GC PN++    LI G C  G LDEA ++  ++   G  ++   YSSL+    + KR 
Sbjct: 667 SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQ 726

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
             A K+ SKML +   P+ +  + MI  LC  G+  E + L + +E+ G
Sbjct: 727 DLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 775



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 186/388 (47%), Gaps = 23/388 (5%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI 106
           +K L   + KL  + VIEVL R     S + I FF+WA  Q  Y+H+S +YN   ++   
Sbjct: 120 QKFLRQFREKLSESLVIEVL-RLIERPSAV-ISFFVWAGRQIGYKHTSPVYNALVDLIVR 177

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
             +  +  ++++  +++   V  + + V+     ++   + A+  L ++ +F  RP    
Sbjct: 178 DDDEKVPEELLQQIRDDDKEVFGEFLNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRST 237

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +I+ F +   + +A  + + M L +L  D  T        C  G+  +A  L   M+
Sbjct: 238 YNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCKVGKWREALTL---ME 294

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
                 + V Y+ L+ G+C     E A++ L  M      C PNVVTY++++   CG  +
Sbjct: 295 TENFVPDTVFYTKLISGLCEASLFEEAMDFLNRM--RATSCLPNVVTYSTLL---CG-CL 348

Query: 287 MKEALG----ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            K+ LG    +L+ M   GC P+    ++L+  +C  G+   AY+L+ K+V  G      
Sbjct: 349 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYV 408

Query: 343 CYSSLVVELVRTKR------LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
            Y+ L+  +   K       L+ AEK +S+MLA+GV  + +  S   R LC  G+  + F
Sbjct: 409 VYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAF 468

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            +  ++   GF+   D+  +S +L  LC
Sbjct: 469 SVIREMIGQGFIP--DTSTYSKVLGYLC 494



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 145/341 (42%), Gaps = 54/341 (15%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  K  G V  V    ++ +   KA L  +A     +M E    P+ + Y  +I  + 
Sbjct: 505 LFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL 564

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM---------- 225
           +   +  A+EL + M      P+I+TY ++I G C AG++E AC +F+ M          
Sbjct: 565 KAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVD 624

Query: 226 -------KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
                    +    N+V Y ALLDG C+L  +E A +LL  M  EG  C PN + Y ++I
Sbjct: 625 MYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEG--CEPNQIVYDALI 682

Query: 279 QIFCGKGMMKEAL-----------------------------------GILDRMEALGCA 303
              C  G + EA                                     +L +M    CA
Sbjct: 683 DGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCA 742

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN V  + +I G C  G  DEAY+L+  +   G   +   Y++++    R  +++   +L
Sbjct: 743 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLEL 802

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
             +M + GV P+ +   V+I   C  G +     L E++++
Sbjct: 803 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQ 843



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 180/412 (43%), Gaps = 91/412 (22%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM------PEFDL-------- 160
           ++ E    EGC+ ++     + +   KA    +A  +  +M      P+ D+        
Sbjct: 574 ELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDD 633

Query: 161 ---RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
              RP+ +IY  ++  FC+   +  A +L+  M +    P+ I Y ++I G C  G+L++
Sbjct: 634 NSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDE 693

Query: 218 ACGLFKVMKRHG-----------------------------------CAANLVAYSALLD 242
           A  +   M  HG                                   CA N+V Y+ ++D
Sbjct: 694 AQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMID 753

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C++G  + A +L+  ME++G  C PNVVTYT++I  F   G ++  L +L+RM + G 
Sbjct: 754 GLCKVGKTDEAYKLMQMMEEKG--CQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGV 811

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLID---------------KVVAGGS---VSSGG-- 342
           APN VT   LI   C  G LD A+ L++               KV+ G +   + S G  
Sbjct: 812 APNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESLGLL 871

Query: 343 -------------CYSSLVVELVRTKRLKEAEKLFSKM--LASGVKPDGLACSVMIRELC 387
                         Y  LV  L++ +RL+ A +L  ++   ++ +       + +I  LC
Sbjct: 872 DEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLC 931

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           L  +V + F L+ ++ K G +  + +     L+ GL R +   EA  L  F+
Sbjct: 932 LANKVDKAFRLFSEMSKKGVIPEMQT--FCSLIKGLFRNSKISEALLLLDFI 981



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 126/261 (48%), Gaps = 19/261 (7%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           ++  R  C  G    A  +++ M      PD  TY  ++   CNA ++E A  LF+ MKR
Sbjct: 452 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKR 511

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G  A++  Y+ ++D  C+ G +E+A +   EM + G  C+PNVVTYT++I  +     +
Sbjct: 512 GGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG--CTPNVVTYTALIHAYLKAKKV 569

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG----- 342
             A  + + M + GC PN VT S LI G C  G +++A Q+ +++     V         
Sbjct: 570 SYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQ 629

Query: 343 ------------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
                        Y +L+    +  R++EA KL   M   G +P+ +    +I  LC  G
Sbjct: 630 YDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVG 689

Query: 391 QVLEGFCLYEDIEKIGFLSSV 411
           ++ E   +  ++ + GF +++
Sbjct: 690 KLDEAQEVKAEMSEHGFPATL 710


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 156/316 (49%), Gaps = 4/316 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V  +M    ++ +T  Y  +I   C+ GD+  A++L   M ++ + PDI TY  +I+
Sbjct: 356 AFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIE 415

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G+     +E A  L   +K+    AN     A+++G+C  G + RA EL  EM   G   
Sbjct: 416 GYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWG--L 473

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PN+V YT++++    +G  +EA+ IL  M+  G +P+    +T+I GFC  G ++E   
Sbjct: 474 KPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKS 533

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
            + +++A G   +   Y + +    R   ++ AE+ F +ML SG+ P+ + C+ +I   C
Sbjct: 534 YLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYC 593

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
             G   + F  +  +   G L  V +  HSVL+ GL +     EA  +   +L K +   
Sbjct: 594 KDGNTTKAFAKFRCMLDQGVLPDVQT--HSVLIHGLSKNGKLQEAMGVFSELLDKGLVPD 651

Query: 448 GPYVDKIVEHLKKSGD 463
                 ++ +L K GD
Sbjct: 652 VFTYTSLISNLCKEGD 667



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 150/295 (50%), Gaps = 4/295 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K +   +A  +L ++ + +L  +  +   ++   C  GD+  A+EL + M    L P+I+
Sbjct: 419 KVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIV 478

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            Y +++KG    GR E+A  +  VMK  G + ++  Y+ ++ G C+ G ME     L EM
Sbjct: 479 IYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEM 538

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G    PNV TY + I  +C  G M+ A      M   G APN V  + LI G+C +G
Sbjct: 539 IAKG--LKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDG 596

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           N  +A+     ++  G +     +S L+  L +  +L+EA  +FS++L  G+ PD    +
Sbjct: 597 NTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYT 656

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +I  LC  G +   F L++D+ K G   ++ +  ++ L+ GLC+     +A +L
Sbjct: 657 SLISNLCKEGDLKAAFELHDDMCKKGINPNIVT--YNALINGLCKLGEIAKAREL 709



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 181/411 (44%), Gaps = 70/411 (17%)

Query: 90  YRHSSFM--YNRACEM------------SRIKQNPSIIIDVVEAY--------------- 120
           Y + +F+  Y RA EM            S I  N  I  D+++ Y               
Sbjct: 548 YTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRC 607

Query: 121 -KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
             ++G +  V+   V+ +   K     EAM V  ++ +  L PD   Y ++I   C++GD
Sbjct: 608 MLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGD 667

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS- 238
           + AA EL   M    + P+I+TY ++I G C  G +  A  LF  +   G A N V YS 
Sbjct: 668 LKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYST 727

Query: 239 ----------------------------------ALLDGICRLGSMERALELLGEMEKEG 264
                                             AL+DG C+ G+ E+AL L   M +EG
Sbjct: 728 IIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG 787

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
              +P    + ++I  F   G + EA  +++ M      PN VT + LI+  C  GN+ E
Sbjct: 788 IASTP---AFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKE 844

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A QL  ++     + +   Y+SL+    R  R  E   LF +M+A G+KPD LA SVM+ 
Sbjct: 845 AEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVD 904

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
                G  ++   L +D+   G   +V  +++++L+  LC+ N+  E  K+
Sbjct: 905 AHLKEGNWIKALKLVDDMLSEGV--NVCKNLYTILIDALCKHNNLSEVLKV 953



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 155/335 (46%), Gaps = 10/335 (2%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARL--ANEAMWVLRKMPEFDLRPDT 164
           QN     +++   K+E    +  M   I N LC    L  ANE   + ++M  + L+P+ 
Sbjct: 421 QNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANE---LFQEMISWGLKPNI 477

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           +IY  +++   ++G    A +++  M    L PD+  Y ++I GFC AG++E+       
Sbjct: 478 VIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVE 537

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   G   N+  Y A + G CR G M+ A     EM   G   +PN V  T +I  +C  
Sbjct: 538 MIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSG--IAPNDVICTDLIDGYCKD 595

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G   +A      M   G  P+  T S LI G    G L EA  +  +++  G V     Y
Sbjct: 596 GNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTY 655

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +SL+  L +   LK A +L   M   G+ P+ +  + +I  LC  G++ +   L++ I +
Sbjct: 656 TSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPE 715

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            G   + +S  +S ++ G C+  +  EA +L   M
Sbjct: 716 KGL--ARNSVTYSTIIAGYCKSANLTEAFQLFHGM 748



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 139/273 (50%), Gaps = 4/273 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+   +A +A  +   +PE  L  +++ Y+ +I  +C+  ++  A +L  GM L+
Sbjct: 693 LINGLCKLGEIA-KARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLV 751

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD   Y ++I G C AG  E A  LF  M   G A+   A++AL+DG  +LG +  A
Sbjct: 752 GVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIAST-PAFNALIDGFFKLGKLIEA 810

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L+ +M       +PN VTYT +I+  C  G +KEA  +   M+     PN +T ++L+
Sbjct: 811 YQLVEDMVDN--HITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLL 868

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+   G   E + L D++VA G       +S +V   ++     +A KL   ML+ GV 
Sbjct: 869 HGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVN 928

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
                 +++I  LC    + E   + +++EK G
Sbjct: 929 VCKNLYTILIDALCKHNNLSEVLKVLDEVEKQG 961



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 163/346 (47%), Gaps = 17/346 (4%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           A +   Y +++ + N  C + ++++   ++ D+    +E+GC+ + V    VI  LC +A
Sbjct: 227 AIVPDVYTYTNLI-NAYCRVGKVEEGKHVLFDM----EEKGCIPNLVTYSVVIAGLC-RA 280

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
              +EA+ + R M    L PD  IY  +I  FC +        ++  M  + L PD + Y
Sbjct: 281 GDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAY 340

Query: 203 VSMIKGFCNAGRLEDACGLFKV---MKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            ++I GF    +  D  G F+V   M       N   Y AL+ G+C++G +E+A +L  E
Sbjct: 341 TALINGFV---KQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSE 397

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M   G    P++ TY  +I+ +     M++A  +L  ++      N      ++ G C  
Sbjct: 398 MTMMG--IKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHC 455

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G+L  A +L  ++++ G   +   Y+++V  LV+  R +EA K+   M   G+ PD    
Sbjct: 456 GDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCY 515

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           + +I   C  G++ EG     ++   G   +V +  +   + G CR
Sbjct: 516 NTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYT--YGAFIHGYCR 559



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 119/244 (48%), Gaps = 11/244 (4%)

Query: 94  SFMY----NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
           SF+Y    +  C+    ++  S+ + +VE    EG   +     +I    +  +L  EA 
Sbjct: 757 SFVYCALIDGCCKAGNTEKALSLFLGMVE----EGIASTPAFNALIDGFFKLGKLI-EAY 811

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            ++  M +  + P+ + Y  +I   C  G++  A++L   M   ++ P+++TY S++ G+
Sbjct: 812 QLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGY 871

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
              GR  +   LF  M   G   + +A+S ++D   + G+  +AL+L+ +M  EG +   
Sbjct: 872 NRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCK 931

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           N+  YT +I   C    + E L +LD +E  G   +  T  TL+  F   G  DEA +++
Sbjct: 932 NL--YTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVL 989

Query: 330 DKVV 333
           + +V
Sbjct: 990 ESMV 993



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           G   P+V TYT++I  +C  G ++E   +L  ME  GC PN VT S +I G C  G++DE
Sbjct: 226 GAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDE 285

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A +L   +   G +     Y++L+    R KR  E + +  +M   G+KPD +A + +I 
Sbjct: 286 ALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALIN 345

Query: 385 ELCLGGQVLEGFCLYEDI--EKIGFLSSVDSDIHSVLLLGLCR 425
                  +   F + E++   KI     +++  +  L+ GLC+
Sbjct: 346 GFVKQSDIGGAFQVKEEMFARKI----KLNTFTYYALIHGLCK 384



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 24/196 (12%)

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRM---------------------EALGCAPNR 306
           S N+ T++ +  I C  G+   A  +L+RM                          + + 
Sbjct: 104 SQNLSTFSILSLILCNSGLFGNAANVLERMIDTRNPHVKILDSIIKCYKEINGSSSSSSV 163

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           V    LI  +  +G L+EA  +         +    C +SL  +L++  R++   K++  
Sbjct: 164 VVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKG 223

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           ML + + PD    + +I   C  G+V EG  +  D+E+ G + ++ +  +SV++ GLCR 
Sbjct: 224 MLGA-IVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVT--YSVVIAGLCRA 280

Query: 427 NHSVEAAKLARFMLKK 442
               EA +L R M  K
Sbjct: 281 GDVDEALELKRSMANK 296


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 176/355 (49%), Gaps = 41/355 (11%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V+ V    ++   C +A    ++  +L ++ EF   P+ +IY  +I   C+KG++  A +
Sbjct: 160 VLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKD 219

Query: 186 LMKGMGLIDL-----------------------------------YPDIITYVSMIKGFC 210
           L   MG + L                                   +P++ TY  ++   C
Sbjct: 220 LFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLC 279

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             GR +DA  +F  M+  G + N+V Y+ L+ G+CR   +  A +++ +M+ +G   +PN
Sbjct: 280 KDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDG--INPN 337

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           ++TY ++I  FCG G + +AL +   +++ G +P+ VT + L+ GFC +G+   A +++ 
Sbjct: 338 LITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVK 397

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G   S   Y+ L+    R+  +++A +L   M   G+ PD    SV+I   C+ G
Sbjct: 398 EMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKG 457

Query: 391 QVLEGFCLYED-IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           Q+ E   L++  +EK    + V   I++ ++LG C++  S  A KL + M +K +
Sbjct: 458 QMNEASRLFKSMVEKNCEPNEV---IYNTMILGYCKEGSSYRALKLLKEMEEKEL 509



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 143/288 (49%), Gaps = 8/288 (2%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMP 156
           N+ C+  R K        V +  +E G   + V    +I  LC + +L NEA  V+ +M 
Sbjct: 276 NQLCKDGRTKD----AFQVFDEMRERGVSCNIVTYNTLIGGLCREMKL-NEANKVVDQMK 330

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
              + P+ I YN +I  FC  G +  A  L + +    L P ++TY  ++ GFC  G   
Sbjct: 331 SDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTS 390

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            A  + K M+  G   + V Y+ L+D   R  +ME+A++L   ME+ G    P+V TY+ 
Sbjct: 391 GAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG--LVPDVHTYSV 448

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I  FC KG M EA  +   M    C PN V  +T+I G+C EG+   A +L+ ++    
Sbjct: 449 LIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKE 508

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
              +   Y  ++  L + ++ KEAE+L  KM+ SG+ P     S++ R
Sbjct: 509 LAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISR 556



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 140/275 (50%), Gaps = 4/275 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
            ++ E  +E+G   ++     + N LC+  R   +A  V  +M E  +  + + YN +I 
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQLCKDGR-TKDAFQVFDEMRERGVSCNIVTYNTLIG 311

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C +  +  A++++  M    + P++ITY ++I GFC  G+L  A  L + +K  G + 
Sbjct: 312 GLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSP 371

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +LV Y+ L+ G CR G    A +++ EME+ G    P+ VTYT +I  F     M++A+ 
Sbjct: 372 SLVTYNILVSGFCRKGDTSGAAKMVKEMEERG--IKPSKVTYTILIDTFARSDNMEKAIQ 429

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   ME LG  P+  T S LI GFC++G ++EA +L   +V      +   Y+++++   
Sbjct: 430 LRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYC 489

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           +      A KL  +M    + P+  +   MI  LC
Sbjct: 490 KEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLC 524



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 152/321 (47%), Gaps = 4/321 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V + +   V+ N   K  +  +   +  KM E  + P+   YN V+   C+ G    A
Sbjct: 228 GLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDA 287

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            ++   M    +  +I+TY ++I G C   +L +A  +   MK  G   NL+ Y+ L+DG
Sbjct: 288 FQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDG 347

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C +G + +AL L  +++  G   SP++VTY  ++  FC KG    A  ++  ME  G  
Sbjct: 348 FCGVGKLGKALSLCRDLKSRG--LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIK 405

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P++VT + LI  F    N+++A QL   +   G V     YS L+       ++ EA +L
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F  M+    +P+ +  + MI   C  G       L +++E+     +V S  +  ++  L
Sbjct: 466 FKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVAS--YRYMIEVL 523

Query: 424 CRKNHSVEAAKLARFMLKKRI 444
           C++  S EA +L   M+   I
Sbjct: 524 CKERKSKEAERLVEKMIDSGI 544


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 163/342 (47%), Gaps = 40/342 (11%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C+K  L  EA+ +  +M    + P    +N ++  FC++G M  A + +  M   +L PD
Sbjct: 318 CKKGLLV-EALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPD 376

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           II+Y ++I GFC  G + +A  L   ++    + N+V Y+ L+DG+CRLG +E AL+L  
Sbjct: 377 IISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKE 436

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR------------ 306
           +M   G    P+VVTYT ++   C  G M  A    D M  +G AP++            
Sbjct: 437 DMINRG--IHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELK 494

Query: 307 -----------------------VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
                                  +T +  + G C  GNL+EA +L+ K++  G V     
Sbjct: 495 LGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVT 554

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+S +   +    L+E  ++F  ML+ G  P  +  +V+I    L G++      + +++
Sbjct: 555 YTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQ 614

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           + G + +V +  ++VL+ G C+     +A K    M +K I+
Sbjct: 615 EKGVVPNVIT--YNVLINGFCKVRKMDQACKFFIEMQEKGIF 654



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 154/315 (48%), Gaps = 4/315 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            VK    I  +     L  +A+ V R M E+ +RP    YN ++  FC+ G++  A +L+
Sbjct: 201 DVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLV 260

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M     YP  +T+  +I G    G L+ A GL + M + G   +   Y+ L+ G C+ 
Sbjct: 261 PKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKK 320

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +  AL L  EM   G   SP V ++ +++  FC +G M +A   L  M      P+ +
Sbjct: 321 GLLVEALALWEEMVTRG--VSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDII 378

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           + +TLI GFC  GN+ EA+ L+D++       +   Y++L+  L R   L+ A KL   M
Sbjct: 379 SYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDM 438

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           +  G+ PD +  +V++   C  G +L     ++++  +G   + D   ++  ++G  +  
Sbjct: 439 INRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGL--APDQFAYTARIVGELKLG 496

Query: 428 HSVEAAKLARFMLKK 442
            + +A KL   ML K
Sbjct: 497 DTAKAFKLQEEMLTK 511



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 132/276 (47%), Gaps = 5/276 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           + PD + Y  ++   C+ G+M+ A E    M  + L PD   Y + I G    G    A 
Sbjct: 443 IHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAF 502

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L + M   G   +++ Y+  ++G+C+LG++E A ELL +M ++G    P+ VTYTS + 
Sbjct: 503 KLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGH--VPDHVTYTSFMH 560

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                G ++E   I   M + G  P  VT + LI    + G LD A     ++   G V 
Sbjct: 561 AHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVP 620

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+ L+    + +++ +A K F +M   G+ P+    +++I E C  G+  E   LY
Sbjct: 621 NVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLY 680

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             +  +G     DS  H  LL  L  K++ V+A + 
Sbjct: 681 AQM--LGKRIRPDSCTHGALLKKL-DKDYKVQAVQF 713



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 2/233 (0%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M    L PD   Y   I    + GD   A +L + M      PD+ITY   + G C  G
Sbjct: 472 EMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLG 531

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            LE+A  L + M R G   + V Y++ +      G +    E+  +M   G   +P VVT
Sbjct: 532 NLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQ--TPTVVT 589

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YT +I      G +  A+     M+  G  PN +T + LI GFC    +D+A +   ++ 
Sbjct: 590 YTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQ 649

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
             G   +   Y+ L+ E     + +EA +L+++ML   ++PD      ++++L
Sbjct: 650 EKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKL 702


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 165/365 (45%), Gaps = 8/365 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C M  ++    I  D++      G V S      + +   K  L  EA  +  K+ +  +
Sbjct: 279 CRMEELEMALRITHDMIRL----GFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+   YN +I   C+      AD L K M    L P+ +TY  +I   C  G +EDA  
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALC 394

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M+  G    +  Y++L++G C+ GS++RA  LL  M KEG   +P   +Y+ +I  
Sbjct: 395 LFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG--LTPTAASYSPLIAG 452

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +  A+ +   M   G A N  T + LI GFC +  +DEA +L DK++    + +
Sbjct: 453 LCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 512

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ ++        +++A +L+ +M+  G+KPD      +I  LCL   V +      
Sbjct: 513 EVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVA 572

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           D+E     + +++   + LL GL R+    E   L   M  + + L       IV    K
Sbjct: 573 DLENS--YAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALK 630

Query: 461 SGDEE 465
             D+E
Sbjct: 631 QHDKE 635



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 142/326 (43%), Gaps = 40/326 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +++ LC+  R+  EA+ V   M    +  D + Y  ++  FC   ++  A  +   M  +
Sbjct: 239 LMYGLCKNMRV-QEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRL 297

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P       MI        +E+A  L   +   G   N+ AY+AL+D +C+    + A
Sbjct: 298 GFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDA 357

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  EM   G    PN VTY  +I   C +GM+++AL + D+M   G        ++LI
Sbjct: 358 DRLFKEMAGRG--LEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLI 415

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT------------------- 354
            G+C +G+LD A  L+  +V  G   +   YS L+  L R                    
Sbjct: 416 NGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIA 475

Query: 355 ----------------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                           K++ EA +LF KM+ S V P+ +  +VMI   CL G + + F L
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQL 535

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLC 424
           Y+ + ++G     D+  +  L+ GLC
Sbjct: 536 YDQMVEMGL--KPDNYTYRSLISGLC 559



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 144/345 (41%), Gaps = 36/345 (10%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +++F+L  K R    A  +  KM +  +  D  +Y   IR +CE  ++  A  L+  M  
Sbjct: 168 QILFSLV-KIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMES 226

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             +    + Y  ++ G C   R+++A  +  VM   G  A+ V Y  L+ G CR+  +E 
Sbjct: 227 EGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEM 286

Query: 253 ALELLGEMEKEG-----GDCS----------------------------PNVVTYTSVIQ 279
           AL +  +M + G      +CS                            PNV  Y ++I 
Sbjct: 287 ALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALID 346

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C      +A  +   M   G  PN VT + LI   C  G +++A  L DK+   G   
Sbjct: 347 KLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKV 406

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+SL+    +   L  A  L S M+  G+ P   + S +I  LC  G +     L+
Sbjct: 407 TVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELH 466

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            ++ + G   + ++   + L+ G C+     EAA+L   M+   +
Sbjct: 467 REMAERGI--AWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNV 509



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 145/293 (49%), Gaps = 10/293 (3%)

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           IR F    D+   D++++    +D Y     Y + I+ +C +  L+ A GL   M+  G 
Sbjct: 176 IRQFALARDLF--DKMLQSGVHLDEY----VYTAGIRAYCESRNLDGARGLVVRMESEGV 229

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
            A+ V Y+ L+ G+C+   ++ A+E+   M   G   + + VTY +++  FC    ++ A
Sbjct: 230 KASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIG--VTADEVTYRTLVYGFCRMEELEMA 287

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           L I   M  LG  P+    S +I     +  ++EA+ L  K+   G V +   Y++L+ +
Sbjct: 288 LRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDK 347

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L + +R  +A++LF +M   G++P+ +  +++I  LC  G + +  CL++ +   G   +
Sbjct: 348 LCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT 407

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V    ++ L+ G C++     A  L   M+K+ +         ++  L ++GD
Sbjct: 408 VYP--YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 170/383 (44%), Gaps = 20/383 (5%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQM---GIRFFIWAALQSSYRHSSFMYNRA 100
           +N+     T    ++  C++  + + F    QM   G++         +Y + S + +  
Sbjct: 507 SNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLK-------PDNYTYRSLI-SGL 558

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C  S + +    + D+  +Y     + +  +  +++ L  + R   E   +  +M    +
Sbjct: 559 CLTSGVSKANEFVADLENSY---AVLNNFSLTALLYGLFREGRFT-ETYHLWDEMAVRGV 614

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           + D + +  ++    ++ D   +  L + M    + PD I Y  MI        +  A  
Sbjct: 615 KLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            +  M   G + N V ++ L++ +C+ G +  A  L  EM    G+  PN  TY   +  
Sbjct: 675 CWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEML--AGNVLPNKFTYNCFLDY 732

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           F  +G M++A  +   M   G   + V+ + LIKG C  G + EA  L+ K+   G    
Sbjct: 733 FATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPD 791

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              YS+++ EL +   + +A +L+++ML  G+KPD +A ++ IR   + G+  +   +Y 
Sbjct: 792 CISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYT 851

Query: 401 DIEKIGFLSSVDSDIHSVLLLGL 423
           ++ + G   + D+  +  LL G+
Sbjct: 852 NMIRSGVQPNWDT--YRALLSGI 872


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 165/314 (52%), Gaps = 10/314 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V +MK++   C   +  NE+++ L  M +    PD I+   +I+ F    ++  A  +M+
Sbjct: 70  VHLMKLLNRSCRAGKY-NESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVME 128

Query: 189 GMGLIDLY--PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
              +++ Y  PD+  Y ++I GF  A +LE+A  +   MK  G   ++V Y+ ++   C 
Sbjct: 129 ---ILERYGKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCS 185

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G ++ ALE+  E+ K+  +C P V+TYT +I+     G +  A+ +LD M + G  P+ 
Sbjct: 186 RGKLDLALEIFEELLKD--NCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDT 243

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           +T + +I+G C E  +D+A++L+  + + G       Y+ L+  L+   +  E EKL S+
Sbjct: 244 LTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISE 303

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M++ G KP+ +  S++I  LC  G+V E   L   +++ G     D+  +  L+ G CR+
Sbjct: 304 MISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGL--KPDAYCYDPLIAGFCRE 361

Query: 427 NHSVEAAKLARFML 440
                A +   +M+
Sbjct: 362 GRLDLATEFLEYMI 375



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 154/295 (52%), Gaps = 4/295 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM +L +M    L PDT+ YN +IR  C++  +  A EL++ +      PDIITY  +++
Sbjct: 227 AMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLR 286

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
              + G+  +   L   M   GC  N+V +S L+  +CR G +E A+ LL  M+++G   
Sbjct: 287 TLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKG--L 344

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+   Y  +I  FC +G +  A   L+ M + GC P+ V  +T++ G C  G  D+A +
Sbjct: 345 KPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALE 404

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           + +K+   G   +   Y++L   L  +     A ++  K+L  G+ PD +  + +I  LC
Sbjct: 405 VFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLC 464

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             G V E   L  D++   +  +V S  ++++LLGLC+ N + +A ++   M +K
Sbjct: 465 RDGMVDEAIELLVDMQSGRYRPNVVS--YNIILLGLCKVNRANDAIEVLAAMTEK 517



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 133/273 (48%), Gaps = 2/273 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA     A  VL +M      PD + YN +I  FC +G +  A E+ + +   +  P +I
Sbjct: 150 KANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVI 209

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  +I+     G ++ A  L   M   G   + + Y+A++ G+C+   +++A ELL  +
Sbjct: 210 TYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSL 269

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G  C P+++TY  +++    +G   E   ++  M ++GC PN VT S LI   C +G
Sbjct: 270 SSRG--CKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDG 327

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            ++EA  L+  +   G      CY  L+    R  RL  A +    M++ G  PD +  +
Sbjct: 328 KVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYN 387

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            ++  LC  G+  +   ++E ++++G   +V S
Sbjct: 388 TIMAGLCRTGKADQALEVFEKLDEVGCPPNVSS 420



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 130/264 (49%), Gaps = 2/264 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +E   ++ +M     +P+ + ++ +I   C  G +  A  L++ M    L PD   Y  +
Sbjct: 295 SEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPL 354

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GFC  GRL+ A    + M   GC  ++V Y+ ++ G+CR G  ++ALE+  ++++ G 
Sbjct: 355 IAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVG- 413

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C PNV +Y ++       G    AL ++ ++   G  P+ +T ++LI   C +G +DEA
Sbjct: 414 -CPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEA 472

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L+  + +G    +   Y+ +++ L +  R  +A ++ + M   G +P+     ++I  
Sbjct: 473 IELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEG 532

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLS 409
           +   G   E   L   +  +  +S
Sbjct: 533 IGFSGLRAEAMELANSLHGMNAIS 556



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 124 GCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC  +V    ++   LC   ++  EA+ +LR M E  L+PD   Y+ +I  FC +G +  
Sbjct: 308 GCKPNVVTHSILIGTLCRDGKV-EEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDL 366

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E ++ M      PDI+ Y +++ G C  G+ + A  +F+ +   GC  N+ +Y+ L  
Sbjct: 367 ATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFS 426

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            +   G   RALE++ ++  +G D  P+ +TY S+I   C  GM+ EA+ +L  M++   
Sbjct: 427 ALWSSGDRYRALEMILKLLNQGID--PDEITYNSLISCLCRDGMVDEAIELLVDMQSGRY 484

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            PN V+ + ++ G C     ++A +++  +   G   +   Y  L+
Sbjct: 485 RPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLI 530



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 65/143 (45%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++V E   E GC  +V     +F+    +     A+ ++ K+    + PD I YN++I  
Sbjct: 403 LEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISC 462

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G +  A EL+  M      P++++Y  ++ G C   R  DA  +   M   GC  N
Sbjct: 463 LCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPN 522

Query: 234 LVAYSALLDGICRLGSMERALEL 256
              Y  L++GI   G    A+EL
Sbjct: 523 ETTYILLIEGIGFSGLRAEAMEL 545


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 150/299 (50%), Gaps = 5/299 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K +L NEA  +  +M    + PD I Y  +I  FC  G ++ A  L+  M L 
Sbjct: 156 IIDGLC-KDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILK 214

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ P +  Y  +I   C  G +++A  L  VM + G    +V YS L+DG C +G ++ A
Sbjct: 215 NINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNA 274

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++   M + G   +PNV +Y  +I   C    + EA+ +L  M      P+ VT ++LI
Sbjct: 275 KQIFHAMVQMG--VNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLI 332

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G +  A  L++++   G  +    Y+SL+  L + + L +A  LF KM   G++
Sbjct: 333 DGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQ 392

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           P     + +I  LC GG++     L++ +   G    +D   ++V++ GLC++    EA
Sbjct: 393 PTMYTYTALIDGLCKGGRLKNAQELFQHLLVKG--CCIDVWTYTVMISGLCKEGMFDEA 449



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 159/315 (50%), Gaps = 4/315 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ + ++M    +R + +  N +I  FC  G M  +  ++  +  +   PD IT  +++K
Sbjct: 29  AISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMK 88

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G ++ +      +   G   + V+Y  LL+G+C++G    A++LL  +E      
Sbjct: 89  GLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRS--T 146

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PNVV Y ++I   C   ++ EA  +   M+A G  P+ +T +TLI GFC+ G L  A+ 
Sbjct: 147 RPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFS 206

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+D+++          Y+ L+  L +   +KEA+ L + M   G+KP  +  S ++   C
Sbjct: 207 LLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYC 266

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
           L G+V     ++  + ++G   +V S  +++++ GLC+     EA  L R ML K +   
Sbjct: 267 LVGEVQNAKQIFHAMVQMGVNPNVYS--YNIMINGLCKCKRVDEAMNLLREMLHKNMVPD 324

Query: 448 GPYVDKIVEHLKKSG 462
               + +++ L KSG
Sbjct: 325 TVTYNSLIDGLCKSG 339



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 159/315 (50%), Gaps = 5/315 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++    +I+  C   +L   A  +L +M   ++ P   IYN +I   C++G++  A  L+
Sbjct: 185 AITYTTLIYGFCLLGQLMG-AFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLL 243

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M    + P ++TY +++ G+C  G +++A  +F  M + G   N+ +Y+ +++G+C+ 
Sbjct: 244 AVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKC 303

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             ++ A+ LL EM  +  +  P+ VTY S+I   C  G +  AL +++ M   G   + V
Sbjct: 304 KRVDEAMNLLREMLHK--NMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVV 361

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T ++L+   C   NLD+A  L  K+   G   +   Y++L+  L +  RLK A++LF  +
Sbjct: 362 TYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL 421

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           L  G   D    +VMI  LC  G   E   +   +E  G + +  +    +++  L  K+
Sbjct: 422 LVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVT--FEIIIRSLFEKD 479

Query: 428 HSVEAAKLARFMLKK 442
            + +A KL   M+ K
Sbjct: 480 ENDKAEKLLHEMIAK 494



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 6/257 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +  A  + G   +V    ++ N   K +  +EAM +LR+M   ++ PDT+ YN++I   C
Sbjct: 277 IFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLC 336

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G + +A  LM  M       D++TY S++   C    L+ A  LF  MK  G    + 
Sbjct: 337 KSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMY 396

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+AL+DG+C+ G ++ A EL   +  +G  C  +V TYT +I   C +GM  EAL I  
Sbjct: 397 TYTALIDGLCKGGRLKNAQELFQHLLVKG--CCIDVWTYTVMISGLCKEGMFDEALAIKS 454

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +ME  GC PN VT   +I+    +   D+A +L+ +++A G +      + + V+    K
Sbjct: 455 KMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLVLDFKVADVFVQNENDK 514

Query: 356 RLKEAEKLFSKMLASGV 372
               AEKL  +M+A G+
Sbjct: 515 ----AEKLLHEMIAKGL 527



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 130/257 (50%), Gaps = 8/257 (3%)

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M L+   P II +  ++       +   A  L K M+  G  AN V  + L++  C LG 
Sbjct: 1   MLLVRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQ 60

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           M  +  +LG++ K G    P+ +T  ++++  C KG +K++L   D++ A G   + V+ 
Sbjct: 61  MAFSFSVLGKILKLG--YQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSY 118

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
            TL+ G C  G    A +L+  +    +  +   Y++++  L + K + EA  L+S+M A
Sbjct: 119 GTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDA 178

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKN 427
            G+ PD +  + +I   CL GQ++  F L +++     L +++    I+++L+  LC++ 
Sbjct: 179 RGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEM----ILKNINPGVYIYNILINALCKEG 234

Query: 428 HSVEAAKLARFMLKKRI 444
           +  EA  L   M K+ I
Sbjct: 235 NVKEAKNLLAVMTKEGI 251


>gi|218191860|gb|EEC74287.1| hypothetical protein OsI_09537 [Oryza sativa Indica Group]
          Length = 689

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 155/314 (49%), Gaps = 10/314 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V +     G  ++  +   + ++C KA  A  A  ++ +M    +  D   +N VI L+C
Sbjct: 259 VFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESLMTRMDAAGVPLDRFSFNTVIALYC 318

Query: 176 EKG---DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            KG   + +   E M+  G   +  D++T+ S+I G C   R+++A  L + M   G A 
Sbjct: 319 RKGMQYEAMCVRERMENQG---VKADVVTWNSLIHGLCKERRVKEASQLLREMAMAGVAP 375

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           + V Y+ L+DG CR G +E A++L GEME  G    P V TY ++++  C  G MKE   
Sbjct: 376 DHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMG--MLPGVATYNAILRKLCEDGKMKEVNV 433

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L+ M+      + VT +TLI  +C  G++  A ++  +++  G       Y +LV    
Sbjct: 434 LLNEMDERKVQADHVTCNTLINAYCKRGDMTSALKVKRRMMESGLQLDQFTYKALVHGFC 493

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           + K L EA++   +M+ +G  P+    S ++  LC     +    + +++ K GF    D
Sbjct: 494 KAKELDEAKEALFEMMGAGFSPNYSVLSWIVDGLCNKNNAVAVLAIPDELMKRGF--PPD 551

Query: 413 SDIHSVLLLGLCRK 426
             ++  L+  LC+K
Sbjct: 552 KAVYRSLIRRLCKK 565



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 8/254 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K R   EA  +LR+M    + PD + Y  ++  +C  GD+  A +L   M  +
Sbjct: 348 LIHGLC-KERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAM 406

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P + TY ++++  C  G++++   L   M      A+ V  + L++  C+ G M  A
Sbjct: 407 GMLPGVATYNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGDMTSA 466

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L++   M + G     +  TY +++  FC    + EA   L  M   G +PN   +S ++
Sbjct: 467 LKVKRRMMESG--LQLDQFTYKALVHGFCKAKELDEAKEALFEMMGAGFSPNYSVLSWIV 524

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C + N      + D+++  G       Y SL+  L +   +  A  +F++M   G++
Sbjct: 525 DGLCNKNNAVAVLAIPDELMKRGFPPDKAVYRSLIRRLCKKGFIDLAGNVFNEMQGKGLE 584

Query: 374 PD-----GLACSVM 382
            D      LAC+ +
Sbjct: 585 ADCLVYATLACAYL 598



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 37/230 (16%)

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN----------------------- 305
           P+    ++++       M   A  + D+M   G A N                       
Sbjct: 235 PDAHASSALLTALAKSRMTATARKVFDQMTRAGVAMNTHVYNAMLHVCLKAGDAALAESL 294

Query: 306 ------------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
                       R + +T+I  +C +G   EA  + +++   G  +    ++SL+  L +
Sbjct: 295 MTRMDAAGVPLDRFSFNTVIALYCRKGMQYEAMCVRERMENQGVKADVVTWNSLIHGLCK 354

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            +R+KEA +L  +M  +GV PD +  + ++   C  G + E   L  ++E +G L  V +
Sbjct: 355 ERRVKEASQLLREMAMAGVAPDHVTYTTLVDGYCRAGDLEEAVKLRGEMEAMGMLPGVAT 414

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             ++ +L  LC      E   L   M ++++       + ++    K GD
Sbjct: 415 --YNAILRKLCEDGKMKEVNVLLNEMDERKVQADHVTCNTLINAYCKRGD 462


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 159/323 (49%), Gaps = 12/323 (3%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V M   I +   K +L NEA  +  +M    + PD + Y+ +I  F   G +  A +L 
Sbjct: 177 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLF 236

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M L ++ PD+ T+  ++ GFC  G++++   +F +M + G   N+V Y +L+DG C +
Sbjct: 237 NKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLV 296

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             + +A  +   M +  G  +P+  +Y  +I  FC    + EA+ +  +M      PN V
Sbjct: 297 KQVNKANSIFNTMAQ--GGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVV 354

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA------- 360
           T ++LI G C  G +  A +L+D++   G       YSS++  L +  ++ +A       
Sbjct: 355 TYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKL 414

Query: 361 -EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
            +++F  +   G   D  A +VMI+  C+ G   E   L   +E  G +   D+  + ++
Sbjct: 415 KDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIP--DAKTYEII 472

Query: 420 LLGLCRKNHSVEAAKLARFMLKK 442
           +L L +K+ +  A KL R M+ +
Sbjct: 473 ILSLFKKDENDMAEKLLREMIAR 495



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 123/243 (50%), Gaps = 11/243 (4%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C+  ++  E   V   M +  ++P+ + Y +++  +C    +  A+ +   M    + P
Sbjct: 258 FCKDGKMK-EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNP 316

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D  +Y  MI GFC   ++++A  LFK M       N+V Y++L+DG+C+ G +  AL+L+
Sbjct: 317 DTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLV 376

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME--------ALGCAPNRVTI 309
            EM   G    P+++TY+S++   C    + +A+ +L +++          G   +    
Sbjct: 377 DEMHDRG--VPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAY 434

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           + +I+GFCV+G  +EA  L+ K+   G +     Y  +++ L +      AEKL  +M+A
Sbjct: 435 TVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIA 494

Query: 370 SGV 372
            G+
Sbjct: 495 RGL 497



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 149/320 (46%), Gaps = 36/320 (11%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD-----MIAADELMKGMGLIDLYPDIITY 202
           A+ + R+M    +  + +  N +I  F + G       + A+ L KG       P++IT 
Sbjct: 79  AISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGYD-----PNVITL 133

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++IKG C              +K        V+Y  L++G+C++G    AL+LL  ++ 
Sbjct: 134 TTLIKGLC--------------LK--------VSYGTLINGLCKVGQARAALQLLRRVD- 170

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    PNVV Y ++I   C   ++ EA  +   M + G +P+ VT S LI GF + G L
Sbjct: 171 -GKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKL 229

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            +A  L +K++          ++ LV    +  ++KE + +F+ M+  G+KP+ +    +
Sbjct: 230 KDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSL 289

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +   CL  QV +   ++  + + G   + D+  +++++ G C+     EA  L + M  K
Sbjct: 290 MDGYCLVKQVNKANSIFNTMAQGGV--NPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCK 347

Query: 443 RIWLQGPYVDKIVEHLKKSG 462
            I         +++ L KSG
Sbjct: 348 NIIPNVVTYTSLIDGLCKSG 367


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 190/405 (46%), Gaps = 28/405 (6%)

Query: 17  KNSKIFALHFTTASPAERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQS 74
           +NSK      +  +  ERF   L+  K   + EK L  +K K+D   V EVL      + 
Sbjct: 18  QNSKFSRRDPSVRTLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLK--IDVEI 75

Query: 75  QMGIRFFIWAALQSSYRH--SSFMYNRAC--------EMSRIKQNPSIIIDVVEAYKEEG 124
            + I+FF WA  + ++ H  +++M    C        EM ++ Q         E  +   
Sbjct: 76  NVKIQFFKWAGKRRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQ---------EMVRSPT 126

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CV+    +  +  +  KA++ N+A+ V  ++     +P    YN++I +  ++G      
Sbjct: 127 CVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIH 186

Query: 185 ELMKGM-GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           EL   M    D +PD +TY  ++  F   GR + A  LF  MK +G       Y+ LL  
Sbjct: 187 ELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAI 246

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
             + G  E+AL L+ EM+ +G  C+P V TYT +I+     G +++A  +   M   GC 
Sbjct: 247 YFKSGD-EKALGLVQEMKDKG--CAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCK 303

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR-LKEAEK 362
           P+ V I+ LI  F   G L++A +L D++ +     +   Y++++  L  +K    EA  
Sbjct: 304 PDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAAS 363

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
            F KM A+GV P     S++I   C   +V +   L E++++ GF
Sbjct: 364 WFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGF 408



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 148/293 (50%), Gaps = 6/293 (2%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +  +M    L P   IY  ++ ++ + GD  A   L++ M      P + TY  +IK
Sbjct: 221 AIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKALG-LVQEMKDKGCAPTVFTYTELIK 279

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G   +GR+EDA  +F  M + GC  ++V  + L++   + G +E AL+L  +M      C
Sbjct: 280 GLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMR--SLKC 337

Query: 268 SPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           +PNVVTY +VI+ +F  K    EA    ++M+A G  P+  T S LI GFC    +++A 
Sbjct: 338 APNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKAL 397

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L++++   G       Y SL+  L + KR + A +LF ++  +  +      +VMI+ L
Sbjct: 398 LLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNL 457

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
              G+  E   L+ +++KIG   + D   ++ L+ GL R     EA    R M
Sbjct: 458 GKCGRPSEAVDLFNEMKKIG--CNPDVYAYNALMSGLVRAGMIEEAFSALRTM 508



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 148/326 (45%), Gaps = 34/326 (10%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +V+  K++GC  +V     +     K+    +A  V   M +   +PD ++ NN+I +F 
Sbjct: 258 LVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFG 317

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKG-FCNAGRLEDACGLFKVMKRHGCAANL 234
           + G +  A +L   M  +   P+++TY ++IK  F +     +A   F+ MK +G   + 
Sbjct: 318 KAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSS 377

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSP-----------NVVTYTSVIQIF-- 281
             YS L+DG C+   +E+AL LL EM+++G    P               Y +  ++F  
Sbjct: 378 FTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLE 437

Query: 282 ----CGK----------------GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
               CG+                G   EA+ + + M+ +GC P+    + L+ G    G 
Sbjct: 438 LKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGM 497

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           ++EA+  +  +   G       ++ ++  L RT R ++A ++F KM  S +KPD ++ + 
Sbjct: 498 IEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNT 557

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGF 407
           ++  L   G   E   L  ++   GF
Sbjct: 558 ILGSLSRSGMFEEAAKLMREMGSRGF 583



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+  R+  +A+ +L +M E    P    Y ++I    +     AA+EL   +   
Sbjct: 383 LIDGFCKTNRV-EKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKEN 441

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
                   Y  MIK     GR  +A  LF  MK+ GC  ++ AY+AL+ G+ R G +E A
Sbjct: 442 CGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEA 501

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
              L  ME+ G  C+P++ ++  ++      G  ++A  +  +M+     P+ V+ +T++
Sbjct: 502 FSALRTMEENG--CTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTIL 559

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
                 G  +EA +L+ ++ + G       YSS++
Sbjct: 560 GSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSIL 594



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 112/236 (47%), Gaps = 13/236 (5%)

Query: 93  SSFMY----NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
           SSF Y    +  C+ +R+++     + ++E   E+G          + N   KA+    A
Sbjct: 376 SSFTYSILIDGFCKTNRVEK----ALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAA 431

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             +  ++ E   R    IY  +I+   + G    A +L   M  I   PD+  Y +++ G
Sbjct: 432 NELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSG 491

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
              AG +E+A    + M+ +GC  +L +++ +L+G+ R G  E+A E+   M+ +     
Sbjct: 492 LVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMF--MKMKDSLIK 549

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           P+ V+Y +++      GM +EA  ++  M + G   + +T S++++     G +DE
Sbjct: 550 PDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAV---GKVDE 602


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 173/354 (48%), Gaps = 39/354 (11%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V+ V    ++   C +A    ++  +L ++ EF   P+ +IY  +I   C+KG++  A +
Sbjct: 160 VLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKD 219

Query: 186 LMKGMGLIDL-----------------------------------YPDIITYVSMIKGFC 210
           L   MG   L                                   +P++ TY  ++   C
Sbjct: 220 LFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLC 279

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             GR +DA  +F  M+  G + N+V Y+ L+ G+CR      A E++ +M+ +G   +PN
Sbjct: 280 KDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDG--INPN 337

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           ++TY ++I  FCG   + +AL +   +++ G +P+ VT + L+ GFC +G+   A +++ 
Sbjct: 338 LITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVK 397

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G   S   Y+ L+    R+  +++A +L S M   G+ PD    SV+I   C+ G
Sbjct: 398 EMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKG 457

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           ++ E   L++ + +  F    +  I++ ++LG C++  S  A +L R M +K +
Sbjct: 458 RMNEASRLFKSMVEKKF--EPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKEL 509



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 136/278 (48%), Gaps = 8/278 (2%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMP 156
           N+ C+  R K        V +  +E G   + V    +I  LC + + ANEA  V+ +M 
Sbjct: 276 NQLCKDGRTKD----AFKVFDEMRERGVSCNIVTYNTLIGGLCREMK-ANEANEVMDQMK 330

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
              + P+ I YN +I  FC    +  A  L + +    L P ++TY  ++ GFC  G   
Sbjct: 331 SDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTS 390

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            A  + K M+  G   + V Y+ L+D   R  +ME+A++L   ME+ G   +P+V TY+ 
Sbjct: 391 GAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELG--LTPDVHTYSV 448

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I  FC KG M EA  +   M      PN V  +T++ G+C EG+   A +L  ++    
Sbjct: 449 LIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKE 508

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
              +   Y  ++  L + ++ KEAE L  KM+ SG+ P
Sbjct: 509 LPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGP 546



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 143/309 (46%), Gaps = 7/309 (2%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K  +  +   +  KM E  + P+   YN V+   C+ G    A ++   M    +  +I+
Sbjct: 245 KNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIV 304

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY ++I G C   +  +A  +   MK  G   NL+ Y+ L+DG C +  + +AL L  ++
Sbjct: 305 TYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDL 364

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           +  G   SP++VTY  ++  FC KG    A  ++  ME  G  P++VT + LI  F    
Sbjct: 365 KSRG--LSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSD 422

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           N+++A QL   +   G       YS L+       R+ EA +LF  M+    +P+ +  +
Sbjct: 423 NMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYN 482

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            M+   C  G       L+ ++E+     +V S  +  ++  LC++  S EA  L   M+
Sbjct: 483 TMVLGYCKEGSSYRALRLFREMEEKELPPNVAS--YRYMIEVLCKERKSKEAEGLVEKMI 540

Query: 441 KKRIWLQGP 449
              I   GP
Sbjct: 541 DSGI---GP 546



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 3/168 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C+K   +  A  V+++M E  ++P  + Y  +I  F    +M  A +L   M  + L P
Sbjct: 383 FCKKGDTSG-AGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTP 441

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ TY  +I GFC  GR+ +A  LFK M       N V Y+ ++ G C+ GS  RAL L 
Sbjct: 442 DVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLF 501

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
            EME++  +  PNV +Y  +I++ C +   KEA G++++M   G  P+
Sbjct: 502 REMEEK--ELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPS 547


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 150/296 (50%), Gaps = 4/296 (1%)

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
           +  RL     ++  KM +   RPD   +N +I   C+KG M +A +++  M      P++
Sbjct: 356 KSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNL 415

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           ITY +++ GFC   +LE+A  +   M   G   N++ Y+ LL  +C+ G + +AL++LGE
Sbjct: 416 ITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGE 475

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M  +G  C P++ T+ ++I   C     ++AL +   M   G   N VT +TLI  F   
Sbjct: 476 MSDKG--CKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRG 533

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G + EA +L++ ++  G       Y+ L+    +    ++A  LF +M+   + P  ++C
Sbjct: 534 GAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISC 593

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +++I  LC  G+V     L  D+   G    V +  ++ L+ GLC+  +  EA  L
Sbjct: 594 NLLINGLCRVGKVCNALELLRDMIHRGLAPDVVT--YNSLINGLCKMGNIREAFNL 647



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 145/286 (50%), Gaps = 4/286 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +D+V      GC  ++     + +  C+K +L  EA +VL +M       + + YN ++R
Sbjct: 400 VDMVNDMSANGCTPNLITYTTLLDGFCKKNQL-EEAGYVLNEMSAKGFELNIMGYNVLLR 458

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C+ G +  A +++  M      PDI T+ ++I G C   R EDA  L++ M   G  A
Sbjct: 459 ALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIA 518

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N V Y+ L+    R G+++ AL+L+ +M   G  C  + +TY  +I+ FC  G  ++ALG
Sbjct: 519 NTVTYNTLIHAFLRGGAIQEALKLVNDMLFRG--CPLDEITYNGLIKAFCKLGATEKALG 576

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D M      P+ ++ + LI G C  G +  A +L+  ++  G       Y+SL+  L 
Sbjct: 577 LFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLC 636

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
           +   ++EA  LF+K+ A G++PD +  + +I   C  G   + + L
Sbjct: 637 KMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLL 682



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 170/384 (44%), Gaps = 10/384 (2%)

Query: 81  FIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140
           F WA  Q  Y H+  +Y+   +     +   +I  ++   KEEG      +   I     
Sbjct: 89  FQWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIMKYYG 148

Query: 141 KARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
           +A L  +A  +L  M   +   P    YN V+ +         A  +   M    + P +
Sbjct: 149 RANLPGQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTV 208

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            T+  ++K  C    +++AC L + M +HGC  N V Y  L+  + +   +  AL+LL E
Sbjct: 209 YTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEE 268

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M   G  C P+V T+  VI   C    + E   ++DRM   G  PN +T   L+ G C  
Sbjct: 269 MFLMG--CLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRV 326

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK-LFSKMLASGVKPDGLA 378
           G +DEA  L++KV     V     ++ L+   V++ RL EA   L+ KM+ +G +PD   
Sbjct: 327 GKVDEAQVLLNKVPTPNDVH----FTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFT 382

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            + +I  LC  G +     +  D+   G   ++ +  ++ LL G C+KN   EA  +   
Sbjct: 383 FNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLIT--YTTLLDGFCKKNQLEEAGYVLNE 440

Query: 439 MLKKRIWLQGPYVDKIVEHLKKSG 462
           M  K   L     + ++  L K+G
Sbjct: 441 MSAKGFELNIMGYNVLLRALCKNG 464



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 165/345 (47%), Gaps = 9/345 (2%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           YN   ++      PS+  +V      +G + +V    V+          + A  +LR M 
Sbjct: 176 YNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMT 235

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           +    P++++Y  +I    ++  +  A +L++ M L+   PD+ T+  +I G C   R+ 
Sbjct: 236 KHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIH 295

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           +   L   M   G   N + Y  L++G+CR+G ++ A  LL ++       +PN V +T 
Sbjct: 296 EGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP------TPNDVHFTI 349

Query: 277 VIQIFCGKGMMKEALGIL-DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           +I  +   G + EA   L D+M   GC P+  T +TLI G C +G +  A  +++ + A 
Sbjct: 350 LINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSAN 409

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   Y++L+    +  +L+EA  + ++M A G + + +  +V++R LC  G+V + 
Sbjct: 410 GCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKA 469

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
             +  ++   G     D    + L+ GLC+ +   +A  L R ML
Sbjct: 470 LDMLGEMSDKG--CKPDIFTFNTLIFGLCKVDRKEDALALYRDML 512



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 4/241 (1%)

Query: 114 IDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +D++    ++GC   +     +IF LC+  R   +A+ + R M    +  +T+ YN +I 
Sbjct: 470 LDMLGEMSDKGCKPDIFTFNTLIFGLCKVDR-KEDALALYRDMLLDGVIANTVTYNTLIH 528

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            F   G +  A +L+  M       D ITY  +IK FC  G  E A GLF  M R     
Sbjct: 529 AFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVP 588

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           + ++ + L++G+CR+G +  ALELL +M   G   +P+VVTY S+I   C  G ++EA  
Sbjct: 589 SNISCNLLINGLCRVGKVCNALELLRDMIHRG--LAPDVVTYNSLINGLCKMGNIREAFN 646

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + ++++A G  P+ +T +TLI   C  G  D+AY L+ + V    + +   +  LV   +
Sbjct: 647 LFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFI 706

Query: 353 R 353
           +
Sbjct: 707 K 707



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D I YN +I+ FC+ G    A  L   M   DL P  I+   +I G C  G++ +A  L 
Sbjct: 554 DEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELL 613

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + M   G A ++V Y++L++G+C++G++  A  L  +++ EG    P+ +TY ++I   C
Sbjct: 614 RDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEG--IQPDAITYNTLICWHC 671

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
             GM  +A  +L R       PN VT   L+  F  E
Sbjct: 672 RAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIKE 708


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 160/314 (50%), Gaps = 8/314 (2%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +E+ C  +  M   + N   K     + + +LR M + + +PD   Y+ VI   C+  ++
Sbjct: 160 REKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINL 219

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
            AA  L+  M   ++ P+I TY S+I G C  G+ E    L   M       N+  +S L
Sbjct: 220 DAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSIL 279

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG+C+ G +E A E++  M ++G    P+++TY++++  +C +G +  A  + + +   
Sbjct: 280 IDGLCKEGKVEDADEVMRHMIEKG--VEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDK 337

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN  + S LI G+C + NL +A QL  ++   G       YS+++  L+   R+ +A
Sbjct: 338 GIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDA 397

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSV 418
           +K+F +ML  G  PD    S ++      G V E   L+  +E+    +  D++I  ++V
Sbjct: 398 KKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLER----NREDTNISFYTV 453

Query: 419 LLLGLCRKNHSVEA 432
           ++ GLC+ +   EA
Sbjct: 454 VINGLCKNDRVREA 467



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 152/289 (52%), Gaps = 4/289 (1%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L +M   ++ P+   ++ +I   C++G +  ADE+M+ M    + PDIITY +++ G+C
Sbjct: 260 LLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYC 319

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G+++ A  +F V++  G   N+ +YS L++G C+  ++ +A++L GE+ ++G    P+
Sbjct: 320 LRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKG--LKPD 377

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
            VTY++++      G + +A  I D M  +G  P+    STL+ G+   G ++EA  L  
Sbjct: 378 TVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFS 437

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           K+      ++   Y+ ++  L +  R++EA  +F K+ + G+ PD    +VMI   C  G
Sbjct: 438 KLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREG 497

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
              E   +   +E  G     ++  ++V++ G  R N   E     + M
Sbjct: 498 LFDEVKGILRKMEDNG--CPANNITYNVIMQGFFRSNKISEIVSFMKEM 544



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 122/239 (51%), Gaps = 5/239 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           V    +++G   ++    ++ N  C+K  LA +AM +  ++ +  L+PDT+ Y+ ++   
Sbjct: 330 VFNVLRDKGIKPNIFSYSILINGYCKKKNLA-KAMQLFGEISQKGLKPDTVTYSTILHGL 388

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            E G +  A ++   M  +   PDI  + +++ G+   G +E+A  LF  ++R+    N+
Sbjct: 389 IEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNI 448

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             Y+ +++G+C+   +  A  +  ++   G    P+V TY  +I  FC +G+  E  GIL
Sbjct: 449 SFYTVVINGLCKNDRVREAHAIFEKLPSIG--LIPDVRTYNVMITGFCREGLFDEVKGIL 506

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
            +ME  GC  N +T + +++GF     + E    + K +AG   S     + +++ +++
Sbjct: 507 RKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFM-KEMAGRGFSFDATTTGVLINVLK 564



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 146/341 (42%), Gaps = 44/341 (12%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           K   N  ++    ++A+ +  +M      P  I ++ + +         A   L + M +
Sbjct: 31  KAHINFDKEVSCLDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRI 90

Query: 193 --IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL--------- 241
             I +   I+  V+    +C   R++ A  +  +  + G   N+V ++ LL         
Sbjct: 91  LGIPISDSILNIVT--NSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKV 148

Query: 242 ---------------------------DGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
                                      +G+ + G  E+ L LL  ME+  G+  P+V TY
Sbjct: 149 TDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQ--GNTKPDVRTY 206

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + VI   C    +  A+ +L+ M+     PN  T ++LI G C  G  ++   L+ ++V 
Sbjct: 207 SIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVN 266

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                +   +S L+  L +  ++++A+++   M+  GV+PD +  S ++   CL GQV  
Sbjct: 267 LNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDR 326

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
              ++  +   G   ++ S  +S+L+ G C+K +  +A +L
Sbjct: 327 ARRVFNVLRDKGIKPNIFS--YSILINGYCKKKNLAKAMQL 365


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 148/271 (54%), Gaps = 4/271 (1%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
            N +  + V E  K++G   SV     +I  LC + ++  E + ++ +M +  L P+ I 
Sbjct: 278 SNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKV-EEGVKLMEEMEDLGLSPNEIT 336

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           +  V++ FC+KG M  A++ + GM   ++ PD++ Y  +I  +   G++EDA  + + M 
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMA 396

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           + G + N+  Y+ L+ G  R G    A  LL EM+++G     +VVTY  +I   C KG 
Sbjct: 397 KKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKG--IEADVVTYNVLIGALCCKGE 454

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +++A+ +LD M  +G  PN +T +T+I+GFC +GN+  AY++  ++      ++   Y+ 
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNV 514

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +    +  ++ EA  L ++ML   + P+G+
Sbjct: 515 FIKYFCQIGKMDEANDLLNEMLDKCLVPNGI 545



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 158/313 (50%), Gaps = 8/313 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADELMKGM 190
           VI  LC   +L  +A  V + +  + L P    YN++I  +C+KG   +M   D L+K M
Sbjct: 197 VISGLCRIGQL-RKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEM 255

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + P  +T+  +I G+C       A  +F+ MK+ G AA++V Y++L+ G+C  G +
Sbjct: 256 VEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKV 315

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E  ++L+ EME  G   SPN +T+  V++ FC KGMM +A   +D M      P+ V  +
Sbjct: 316 EEGVKLMEEMEDLG--LSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYN 373

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            LI  +   G +++A  + + +   G   +   Y+ L+    R+   + A  L  +M   
Sbjct: 374 ILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK 433

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G++ D +  +V+I  LC  G+V +   L +++ ++G     +   ++ ++ G C K +  
Sbjct: 434 GIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGL--EPNHLTYNTIIQGFCDKGNIK 491

Query: 431 EAAKLARFMLKKR 443
            A ++   M K R
Sbjct: 492 SAYEIRTRMEKCR 504



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 125/248 (50%), Gaps = 19/248 (7%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+   C+K  +A+   W+   M E ++ PD +IYN +I ++   G M  A  + + M   
Sbjct: 340 VLKGFCKKGMMADANDWI-DGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKK 398

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P++ TY  +I GF  +G    A GL   MK  G  A++V Y+ L+  +C  G + +A
Sbjct: 399 GISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKA 458

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++LL EM + G    PN +TY ++IQ FC KG +K A  I  RME      N VT +  I
Sbjct: 459 VKLLDEMSEVG--LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI 516

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           K FC  G +DEA  L+++++    V +G  Y +          +KE       M+  G  
Sbjct: 517 KYFCQIGKMDEANDLLNEMLDKCLVPNGITYET----------IKEG------MMEKGYT 560

Query: 374 PDGLACSV 381
           PD   C+V
Sbjct: 561 PDIRGCTV 568



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 133/277 (48%), Gaps = 7/277 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC---NAGRLEDA 218
           PD   +N VI   C  G +  A ++ K +    L P + TY S+I G+C    AG +   
Sbjct: 189 PDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L K M   G +   V +  L++G C+  +   A+ +  EM+++G   + +VVTY S+I
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQG--IAASVVTYNSLI 306

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C +G ++E + +++ ME LG +PN +T   ++KGFC +G + +A   ID +      
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE 366

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y+ L+    R  ++++A  +   M   G+ P+    + +I      G       L
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +++++ G     D   ++VL+  LC K    +A KL
Sbjct: 427 LDEMKEKGI--EADVVTYNVLIGALCCKGEVRKAVKL 461



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 127/272 (46%), Gaps = 11/272 (4%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P   +  +++ G   A R++ A   F+   R   + ++  ++ ++ G+CR+G + +A ++
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFC---GKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +++  G   +P+V TY S+I  +C   G G M     +L  M   G +P  VT   LI
Sbjct: 214 AKDIKAWG--LAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C   N   A ++ +++   G  +S   Y+SL+  L    +++E  KL  +M   G+ 
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVE 431
           P+ +    +++  C  G + +     + + +     +V+ D  I+++L+    R     +
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTE----RNVEPDVVIYNILIDVYRRLGKMED 387

Query: 432 AAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           A  +   M KK I       + ++    +SGD
Sbjct: 388 AMAVKEAMAKKGISPNVTTYNCLITGFSRSGD 419



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 4/178 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V EA  ++G   +V     +     ++     A  +L +M E  +  D + YN +I   C
Sbjct: 391 VKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALC 450

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            KG++  A +L+  M  + L P+ +TY ++I+GFC+ G ++ A  +   M++    AN+V
Sbjct: 451 CKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVV 510

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDC-SPNVVTYTSVIQIFCGKGMMKEALG 292
            Y+  +   C++G M+ A +LL EM  +   C  PN +TY ++ +    KG   +  G
Sbjct: 511 TYNVFIKYFCQIGKMDEANDLLNEMLDK---CLVPNGITYETIKEGMMEKGYTPDIRG 565


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 155/304 (50%), Gaps = 5/304 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC + ++  +A+ +  KM     +P+ + Y  +I   C+ G+  AA  L++ M   
Sbjct: 143 LIRGLCVEGKIG-DALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQG 201

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +  PD++ Y S+I   C   ++ +A  LF  M   G + ++  Y++L+  +C L   +  
Sbjct: 202 NCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHV 261

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL +M        P+VV +++V+   C +G + EA  ++D M   G  PN VT + L+
Sbjct: 262 TTLLNQMIN--SKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALM 319

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C++  +DEA ++ D +V  G   +   Y++L+    + +R+ +A  LF +M    + 
Sbjct: 320 DGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELI 379

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  + ++  LC  G++ +   L+ ++   G +   D   + +LL  LC+K+H  EA 
Sbjct: 380 PNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIP--DLATYRILLDYLCKKSHLDEAM 437

Query: 434 KLAR 437
            L +
Sbjct: 438 ALLK 441



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 154/303 (50%), Gaps = 10/303 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K    N A+ +LR M + + +PD ++Y ++I   C+   +  A  L   M   
Sbjct: 178 LINGLC-KVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQ 236

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PDI TY S+I   CN    +    L   M       ++V +S ++D +C+ G +  A
Sbjct: 237 GISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEA 296

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +++  M   G    PNVVTY +++   C +  M EA+ + D M   G APN ++ +TLI
Sbjct: 297 HDVVDMMIIRG--VEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLI 354

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C    +D+A  L +++     + +   Y++L+  L    RL++A  LF +M+A G  
Sbjct: 355 NGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQI 414

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVE 431
           PD     +++  LC    + E   L + IE     S++D D  I+++++ G+CR    +E
Sbjct: 415 PDLATYRILLDYLCKKSHLDEAMALLKTIEG----SNMDPDIQIYTIVIDGMCRAG-ELE 469

Query: 432 AAK 434
           AA+
Sbjct: 470 AAR 472



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 159/307 (51%), Gaps = 10/307 (3%)

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           NLCE   +      +L +M    + PD +I++ V+   C++G +  A +++  M +  + 
Sbjct: 254 NLCEWKHVTT----LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE 309

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+++TY +++ G C    +++A  +F  M  +G A N+++Y+ L++G C++  M++A  L
Sbjct: 310 PNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYL 369

Query: 257 LGEM-EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
             EM +KE     PN VTY +++   C  G +++A+ +   M A G  P+  T   L+  
Sbjct: 370 FEEMCQKE---LIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDY 426

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C + +LDEA  L+  +           Y+ ++  + R   L+ A  +FS + + G++P+
Sbjct: 427 LCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPN 486

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
               ++MI  LC  G + E   L+ +++  G   S D   ++ +  GL +   ++ A +L
Sbjct: 487 VRTYTIMINGLCRRGLLDEANKLFMEMDGNG--CSPDGCTYNTITQGLLQNKEALRAIQL 544

Query: 436 ARFMLKK 442
            + ML +
Sbjct: 545 LQEMLAR 551



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 172/371 (46%), Gaps = 32/371 (8%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQM---GIR--FFIWAALQSS------YRHS 93
           N +  +    + +DS C    +   F   S+M   GI    F + +L  S      ++H 
Sbjct: 202 NCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHV 261

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS----VKMM--------KVIFNL--- 138
           + + N+    S+I  +  I   VV+A  +EG +      V MM         V +N    
Sbjct: 262 TTLLNQMIN-SKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMD 320

Query: 139 --CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
             C ++ + +EA+ V   M      P+ I YN +I  +C+   M  A  L + M   +L 
Sbjct: 321 GHCLQSEM-DEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELI 379

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+ +TY +++ G C+ GRL+DA  LF  M  HG   +L  Y  LLD +C+   ++ A+ L
Sbjct: 380 PNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMAL 439

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  +E  G +  P++  YT VI   C  G ++ A  I   + + G  PN  T + +I G 
Sbjct: 440 LKTIE--GSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGL 497

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G LDEA +L  ++   G    G  Y+++   L++ K    A +L  +MLA G   D 
Sbjct: 498 CRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADV 557

Query: 377 LACSVMIRELC 387
              ++++  LC
Sbjct: 558 STTTLLVEMLC 568



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 154/327 (47%), Gaps = 4/327 (1%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N +  I ++ + ++  C   V +   I +   K R   EA  +  KM    + PD   Y 
Sbjct: 187 NTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYT 246

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           ++I   C   +      L+  M    + PD++ + +++   C  G++ +A  +  +M   
Sbjct: 247 SLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIR 306

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   N+V Y+AL+DG C    M+ A+++   M   G   +PNV++Y ++I  +C    M 
Sbjct: 307 GVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG--YAPNVISYNTLINGYCKIQRMD 364

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A  + + M      PN VT +TL+ G C  G L +A  L  ++VA G +     Y  L+
Sbjct: 365 KATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILL 424

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L +   L EA  L   +  S + PD    +++I  +C  G++     ++ ++   G  
Sbjct: 425 DYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLR 484

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +V +  +++++ GLCR+    EA KL
Sbjct: 485 PNVRT--YTIMINGLCRRGLLDEANKL 509



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 133/299 (44%), Gaps = 8/299 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+    +M      P T+ +N ++    +         L   M    + PD+ T   +
Sbjct: 49  DDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNIL 108

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC+  R   A  +   + + G   +   ++ L+ G+C  G +  AL L  +M  EG 
Sbjct: 109 INSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG- 167

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PNVVTY ++I   C  G    A+ +L  ME   C P+ V  +++I   C +  + EA
Sbjct: 168 -FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA 226

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           + L  K+V  G       Y+SL+  L      K    L ++M+ S + PD +  S ++  
Sbjct: 227 FNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDA 286

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC  G++ E      D+  +  +  V+ ++  ++ L+ G C ++   EA K+   M+  
Sbjct: 287 LCKEGKITEA----HDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHN 341



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 22/289 (7%)

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAAL-QSSYRHSSFMYNRA---- 100
           +E  + T  A +D  C+          QS+M     ++  +  + Y  +   YN      
Sbjct: 308 VEPNVVTYNALMDGHCL----------QSEMDEAVKVFDTMVHNGYAPNVISYNTLINGY 357

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++ R+ +   +     E  ++E    +V    ++  LC   RL  +A+ +  +M     
Sbjct: 358 CKIQRMDKATYLF---EEMCQKELIPNTVTYNTLMHGLCHVGRL-QDAIALFHEMVAHGQ 413

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   Y  ++   C+K  +  A  L+K +   ++ PDI  Y  +I G C AG LE A  
Sbjct: 414 IPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARD 473

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +F  +   G   N+  Y+ +++G+CR G ++ A +L   ME +G  CSP+  TY ++ Q 
Sbjct: 474 IFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLF--MEMDGNGCSPDGCTYNTITQG 531

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
                    A+ +L  M A G + +  T + L++  C +  LD++ + I
Sbjct: 532 LLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC-DDKLDQSVKQI 579



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + +AL   +RM  +   P+ V  + L+            + L +++ + G        + 
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 107

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+       R   A  + +K+L  G++PD    + +IR LC+ G++ +   L++ +   G
Sbjct: 108 LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 167

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           F  +V +  +  L+ GLC+  ++  A +L R M
Sbjct: 168 FQPNVVT--YGTLINGLCKVGNTNAAIRLLRSM 198


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 143/279 (51%), Gaps = 3/279 (1%)

Query: 162  PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
            PD      ++   CE G +  A    + M  +   P++I + S+I G C  G ++ A  +
Sbjct: 851  PDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEM 910

Query: 222  FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
             + M R+G   N+  ++AL+DG+C+ G  E+A  L  ++ +      PNV TYTS+I  +
Sbjct: 911  LEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVR-SDTYKPNVHTYTSMIGGY 969

Query: 282  CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
            C +  +  A  +  RM+  G  PN  T +TLI G C  G+   AY+L++ +   G + + 
Sbjct: 970  CKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNI 1029

Query: 342  GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
              Y++ +  L +  R  EA +L +K  + G++ DG+  +++I+E C    + +    +  
Sbjct: 1030 YTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCR 1089

Query: 402  IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            + K GF    D  ++++L+   CR+    E+ +L + ++
Sbjct: 1090 MNKTGF--EADMRLNNILIAAFCRQKKMKESERLFQLVV 1126



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 142/334 (42%), Gaps = 12/334 (3%)

Query: 139  CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
            C++ +L N A  +  +M E  L P+   Y  +I   C+ G    A ELM  MG     P+
Sbjct: 970  CKEDKL-NRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPN 1028

Query: 199  IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            I TY + I   C   R  +A  L       G  A+ V Y+ L+   C+   + +AL    
Sbjct: 1029 IYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFC 1088

Query: 259  EMEKEG--GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             M K G   D   N +    +I  FC +  MKE+  +   + +LG  P + T +++I  +
Sbjct: 1089 RMNKTGFEADMRLNNI----LIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCY 1144

Query: 317  CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
            C EG++D A +    +   G V     Y SL+  L +   + EA KL+  M+  G+ P  
Sbjct: 1145 CKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPE 1204

Query: 377  LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
            +    +  E C          L E ++K  ++ +V       L+  LC +     AA   
Sbjct: 1205 VTRVTLAYEYCKRNDSANAMILLEPLDKKLWIRTV-----RTLVRKLCSEKKVGVAALFF 1259

Query: 437  RFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            + +L+K        +        +SG   L+T+L
Sbjct: 1260 QKLLEKDSSADRVTLAAFTTACSESGKNNLVTDL 1293


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 157/289 (54%), Gaps = 5/289 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LCEK  L++  M+    +   +LRPD  +YN +I  + + GD+  A  L K +    + P
Sbjct: 406 LCEKGMLSDARMY-FDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITP 464

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            I+T+ S+I GFC   ++ +A  L + +K HG   + V Y+ L++  C  G++ +  ELL
Sbjct: 465 SIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELL 524

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM  +  D  P VVTYT VI+  C +  ++E++ +L+ M A G AP+++T +T+I+ FC
Sbjct: 525 LEMNLK--DIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFC 582

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
              ++ +A++L+D ++      +   Y+ L+  L R   +++A+++   +    +    +
Sbjct: 583 KAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKV 642

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           A + MI+  C+ G       ++  + + GF  S+    +S ++  LC++
Sbjct: 643 AYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKD--YSAVINRLCKR 689



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 135/280 (48%), Gaps = 3/280 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I+  C K R   EA  +L  +    L P  + Y  ++  +CE+G++    EL+ 
Sbjct: 467 VTFNSLIYGFC-KNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLL 525

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M L D+ P ++TY  +IKG C   +LE++  L + M+  G A + + Y+ ++   C+  
Sbjct: 526 EMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAK 585

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            M +A ELL +M     +  P   TY  +I   C  G +++A  +L  ++       +V 
Sbjct: 586 DMRKAFELLDDMLIH--NLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVA 643

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +T+IK  CV+G+   A ++  ++V  G   S   YS+++  L +   + EA+  F  ML
Sbjct: 644 YTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIML 703

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
           + GV PD     +M+      G V   F L   + K G L
Sbjct: 704 SDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLL 743



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 141/296 (47%), Gaps = 5/296 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K  LA+ A      M ++ + PDT  YN +I      G M  A EL   M    L PD++
Sbjct: 197 KLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMV 256

Query: 201 TYVSMIKGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           TY  + KGF   G +  A  +  K++   G   +LV Y+ L+ G C++G++E AL L  +
Sbjct: 257 TYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRD 316

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           +   G     NV+ Y+ ++   C +G + EAL +L  MEA    P+ VT S LI G C +
Sbjct: 317 LLSSGFQL--NVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQ 374

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G + +A QL  ++       +   +S ++  L     L +A   F  ++ S ++PD    
Sbjct: 375 GKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLY 434

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           ++MI      G V E   LY+ +       S+ +   + L+ G C+    VEA +L
Sbjct: 435 NIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVT--FNSLIYGFCKNRKVVEARRL 488



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 158/320 (49%), Gaps = 41/320 (12%)

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG---------- 191
           +R+ ++A++VL KM E +LRP    YN+++        M      +K  G          
Sbjct: 96  SRMVHDALFVLVKMKEQNLRPSIQTYNSLLYNLRHTDIMWDVYNDIKDSGTPQSARTSSI 155

Query: 192 LID----------------------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           ++D                        P ++++ +++  +C  G  + A   F +M ++G
Sbjct: 156 IVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYG 215

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              +  +Y+ L+ G+   GSME ALEL  +MEK+G    P++VTY  V + F   G+M  
Sbjct: 216 ILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQG--LQPDMVTYKIVAKGFHLLGLMSG 273

Query: 290 ALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           A  I+ +M    G  P+ VT + LI G C  GN++EA +L   +++ G   +   YS L+
Sbjct: 274 AREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLL 333

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI--EKIG 406
             L +  ++ EA +L  +M A+ ++PD +  S++I  LC  G+V +   LY+++   +I 
Sbjct: 334 SSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRI- 392

Query: 407 FLSSVDSDIHSVLLLGLCRK 426
                +S  HS +L GLC K
Sbjct: 393 ---FPNSFAHSGILKGLCEK 409



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 133/263 (50%), Gaps = 5/263 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID--LYPDIITYVS 204
           EA+ +   M +  L+PD + Y  V + F   G M  A E+++ M L D  L PD++TY  
Sbjct: 238 EALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKM-LTDEGLKPDLVTYTV 296

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C  G +E+A  L + +   G   N++ YS LL  +C+ G ++ AL+LL EME   
Sbjct: 297 LICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEME--A 354

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
            +  P++VTY+ +I   C +G +++A+ +   M      PN    S ++KG C +G L +
Sbjct: 355 NNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSD 414

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A    D ++          Y+ ++   V+   ++EA +L+ ++    + P  +  + +I 
Sbjct: 415 ARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIY 474

Query: 385 ELCLGGQVLEGFCLYEDIEKIGF 407
             C   +V+E   L E I+  G 
Sbjct: 475 GFCKNRKVVEARRLLESIKLHGL 497



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 42/249 (16%)

Query: 88  SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
           S+  +++ M N  CE   I +   +++++      E  VV+  +  VI  LC++ +L  E
Sbjct: 500 SAVTYTTLM-NAYCEEGNINKLHELLLEM-NLKDIEPTVVTYTV--VIKGLCKQRKL-EE 554

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP---------- 197
           ++ +L  M    L PD I YN +I+ FC+  DM  A EL+  M + +L P          
Sbjct: 555 SVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLID 614

Query: 198 ------DI-------------------ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
                 D+                   + Y +MIK  C  G  + A  +F  M   G   
Sbjct: 615 GLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEV 674

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++  YSA+++ +C+   +  A      M  +G   SP+   +  ++  F   G +     
Sbjct: 675 SIKDYSAVINRLCKRCLINEAKYYFCIMLSDG--VSPDQEIFEMMLNAFHRAGHVHSVFE 732

Query: 293 ILDRMEALG 301
           +L  M   G
Sbjct: 733 LLAVMIKFG 741


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 178/366 (48%), Gaps = 12/366 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPE--FDLRPDTIIYNNVIR 172
           V+    + GC+ +V    ++   LC++ R + EA+ +L+ MP+   D  PD + Y  VI 
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENR-SQEALELLQMMPDDGGDCPPDVVSYTTVIN 207

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            F ++GD+  A      M    + P+++TY S+I   C A  ++ A  +   M ++G   
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP 267

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y++++ G C  G  + A+  L +M  +G    P+VVTY S++   C  G   EA  
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG--VEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D M   G  P   T  TL++G+  +G L E + L+D +V  G   +   +S L+    
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  ++ +A  +FSKM   G+ PD +    +I  LC  G+V +    +E +  I    S  
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM--IDERLSPG 443

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG----DEELIT 468
           + +++ L+  LC  +   +A +L   ML + I L   + + I++   K G     E+L  
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD 503

Query: 469 NLPKIG 474
            + +IG
Sbjct: 504 LMVRIG 509



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 155/306 (50%), Gaps = 5/306 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C   +   EA+  L+KM    + PD + YN+++   C+ G    A ++   M   
Sbjct: 275 IVHGYCSSGQ-PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+I TY ++++G+   G L +  GL  +M R+G   N   +S L+    + G +++A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +  +M ++G   +P+ VTY +VI I C  G +++A+   ++M     +P  +  ++LI
Sbjct: 394 MLVFSKMRQQG--LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLI 451

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C+    D+A +LI +++  G       ++S++    +  R+ E+EKLF  M+  GVK
Sbjct: 452 HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 511

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  S +I   CL G++ E   L   +  +G     D   ++ L+ G C+ +   +A 
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM--KPDCVTYNTLINGYCKISRMEDAL 569

Query: 434 KLARFM 439
            L R M
Sbjct: 570 VLFREM 575



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 3/248 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGL-FKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           D I +  ++KG C   R  DA  +  + M + GC  N+ +Y+ LL G+C     + ALEL
Sbjct: 125 DAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M  +GGDC P+VV+YT+VI  F  +G + +A G    M   G  PN VT S++I   
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    +D+A +++  +V  G + +   Y+S+V     + + KEA     KM + GV+PD 
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + ++  LC  G+  E   +++ + K G    + +  +  LL G   K   VE   L 
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLL 362

Query: 437 RFMLKKRI 444
             M++  I
Sbjct: 363 DLMVRNGI 370



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 5/238 (2%)

Query: 160 LRPDTIIYNNVIRLFC-EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            R D I +  +++  C +K    A D +++ M  +   P++ +Y  ++KG C+  R ++A
Sbjct: 122 FRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEA 181

Query: 219 CGLFKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
             L ++M   G  C  ++V+Y+ +++G  + G +++A     EM   G    PNVVTY+S
Sbjct: 182 LELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRG--ILPNVVTYSS 239

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   C    M +A+ +L  M   G  PN  T ++++ G+C  G   EA   + K+ + G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                  Y+SL+  L +  R  EA K+F  M   G+KP+      +++     G ++E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 2/224 (0%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           DTI +N++I   C++G +I +++L   M  I + PDIITY ++I G+C AG++++A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   + V Y+ L++G C++  ME AL L  EME  G   SP+++TY  ++Q   
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG--VSPDIITYNIILQGLF 595

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
                  A  +   +   G      T + ++ G C     DEA ++   +          
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 655

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            ++ ++  L++  R  EA+ LF+ + A+G+ PD    S+M   L
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 3/284 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    VI  LC+  R+  +AM    +M +  L P  I+YN++I   C       A EL+
Sbjct: 409 TVTYGTVIGILCKSGRV-EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M    +  D I + S+I   C  GR+ ++  LF +M R G   +++ YS L+DG C  
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G M+ A +LL  M   G    P+ VTY ++I  +C    M++AL +   ME+ G +P+ +
Sbjct: 528 GKMDEATKLLASMVSVG--MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + +++G         A +L   +   G+      Y+ ++  L +     EA ++F  +
Sbjct: 586 TYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
             + ++ +    ++MI  L   G+  E   L+  +   G +  V
Sbjct: 646 CLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 123/268 (45%), Gaps = 3/268 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C+ ++    +I + C++ R+  E+  +   M    ++PD I Y+ +I  +C  G M  A 
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVI-ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 534

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L+  M  + + PD +TY ++I G+C   R+EDA  LF+ M+  G + +++ Y+ +L G+
Sbjct: 535 KLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGL 594

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            +      A EL   + + G      + TY  ++   C   +  EAL +   +       
Sbjct: 595 FQTRRTAAAKELYVGITESGTQLE--LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + +I      G  DEA  L   + A G V     YS +   L+    L+E + LF
Sbjct: 653 ETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLF 712

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQV 392
             M  +G   +    + ++R+L   G +
Sbjct: 713 LSMEENGCTANSRMLNSIVRKLLQRGDI 740



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G  + +    +I +   K  L +EA+ + + +   DL+ +T  +N +I    + G   
Sbjct: 612 ESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 671

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L   +    L PD+ TY  M +     G LE+   LF  M+ +GC AN    ++++
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIV 731

Query: 242 DGICRLGSMERA 253
             + + G + RA
Sbjct: 732 RKLLQRGDITRA 743


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 161/301 (53%), Gaps = 6/301 (1%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           + ++V+   + +GC  +V    ++ +  C+  ++ +EA  VL +M    L+P+T+ +N +
Sbjct: 407 LALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKI-DEAYNVLNEMSADGLKPNTVGFNCL 465

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I  FC++  +  A E+ + M      PD+ T+ S+I G C    ++ A  L + M   G 
Sbjct: 466 ISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 525

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP-NVVTYTSVIQIFCGKGMMKE 289
            AN V Y+ L++   R G ++ A +L+ EM  +G   SP + +TY S+I+  C  G + +
Sbjct: 526 VANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG---SPLDEITYNSLIKGLCRAGEVDK 582

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  + ++M   G AP+ ++ + LI G C  G ++EA +   ++V  GS      ++SL+ 
Sbjct: 583 ARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLIN 642

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L R  R+++   +F K+ A G+ PD +  + ++  LC GG V +   L ++  + GF+ 
Sbjct: 643 GLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVP 702

Query: 410 S 410
           +
Sbjct: 703 N 703



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 151/298 (50%), Gaps = 11/298 (3%)

Query: 134 VIFN-----LCEKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           VIFN          RL ++A  VL  M   + + PD   YN++I  + ++G +  A E++
Sbjct: 354 VIFNTLIHGFVTHGRL-DDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M      P++ +Y  ++ GFC  G++++A  +   M   G   N V ++ L+   C+ 
Sbjct: 413 HDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKE 472

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             +  A+E+  EM ++G  C P+V T+ S+I   C    +K AL +L  M + G   N V
Sbjct: 473 HRIPEAVEIFREMPRKG--CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTV 530

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T +TLI  F   G + EA +L++++V  GS      Y+SL+  L R   + +A  LF KM
Sbjct: 531 TYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           L  G  P  ++C+++I  LC  G V E     +++   G  S+ D    + L+ GLCR
Sbjct: 591 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRG--STPDIVTFNSLINGLCR 646



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 166/347 (47%), Gaps = 13/347 (3%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           R+    +++ D+V +Y   G V  V     +     K  L   A+ VL  M     +P+ 
Sbjct: 368 RLDDAKAVLSDMVTSY---GIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNV 424

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
             Y  ++  FC+ G +  A  ++  M    L P+ + +  +I  FC   R+ +A  +F+ 
Sbjct: 425 YSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFRE 484

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M R GC  ++  +++L+ G+C +  ++ AL LL +M  EG     N VTY ++I  F  +
Sbjct: 485 MPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG--VVANTVTYNTLINAFLRR 542

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G +KEA  +++ M   G   + +T ++LIKG C  G +D+A  L +K++  G   S    
Sbjct: 543 GEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISC 602

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + L+  L R+  ++EA +   +M+  G  PD +  + +I  LC  G++ +G  ++  ++ 
Sbjct: 603 NILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQA 662

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR------FMLKKRIW 445
            G     D+   + L+  LC+     +A  L        F+   R W
Sbjct: 663 EGI--PPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTW 707



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 171/355 (48%), Gaps = 16/355 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C ++ I    S++ D+ +     GCV +  + + + +   K    NEA+ +L +M     
Sbjct: 228 CAVNEIDSALSLLRDMTK----HGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 283

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   +N+VI   C+   +  A +++  M +    PD ITY  ++ G C  GR++ A  
Sbjct: 284 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKD 343

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  + +      +V ++ L+ G    G ++ A  +L +M    G   P+V TY S+I  
Sbjct: 344 LFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYG-IVPDVCTYNSLIYG 398

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +  +G++  AL +L  M   GC PN  + + L+ GFC  G +DEAY +++++ A G   +
Sbjct: 399 YWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPN 458

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ L+    +  R+ EA ++F +M   G KPD    + +I  LC   ++     L  
Sbjct: 459 TVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLR 518

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
           D+   G +++  +  ++ L+    R+    EA KL   M+      QG  +D+I 
Sbjct: 519 DMISEGVVANTVT--YNTLINAFLRRGEIKEARKLVNEMV-----FQGSPLDEIT 566



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 156/320 (48%), Gaps = 11/320 (3%)

Query: 124 GCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GCV   +    VI  LC+  R+ NEA  ++ +M      PD I Y  ++   C+ G + A
Sbjct: 282 GCVPDAETFNDVILGLCKFDRI-NEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDA 340

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM-KRHGCAANLVAYSALL 241
           A +L   +      P+I+ + ++I GF   GRL+DA  +   M   +G   ++  Y++L+
Sbjct: 341 AKDLFYRIP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 396

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G  + G +  ALE+L +M  +G  C PNV +YT ++  FC  G + EA  +L+ M A G
Sbjct: 397 YGYWKEGLVGLALEVLHDMRNKG--CKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADG 454

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN V  + LI  FC E  + EA ++  ++   G       ++SL+  L     +K A 
Sbjct: 455 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 514

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
            L   M++ GV  + +  + +I      G++ E   L  ++   G  S +D   ++ L+ 
Sbjct: 515 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG--SPLDEITYNSLIK 572

Query: 422 GLCRKNHSVEAAKLARFMLK 441
           GLCR     +A  L   ML+
Sbjct: 573 GLCRAGEVDKARSLFEKMLR 592



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 136/249 (54%), Gaps = 7/249 (2%)

Query: 113 IIDVVEAYKE---EGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           I + VE ++E   +GC   V     +I  LCE   + + A+W+LR M    +  +T+ YN
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKH-ALWLLRDMISEGVVANTVTYN 533

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I  F  +G++  A +L+  M       D ITY S+IKG C AG ++ A  LF+ M R 
Sbjct: 534 TLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 593

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G A + ++ + L++G+CR G +E A+E   EM   G   +P++VT+ S+I   C  G ++
Sbjct: 594 GHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGS--TPDIVTFNSLINGLCRAGRIE 651

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           + L +  +++A G  P+ VT +TL+   C  G + +A  L+D+ +  G V +   +S L+
Sbjct: 652 DGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILL 711

Query: 349 VELVRTKRL 357
             ++  + L
Sbjct: 712 QSIIPQETL 720



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 150/358 (41%), Gaps = 10/358 (2%)

Query: 70  FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV 129
            P      +  F W   Q+ YRHS  +Y               I  ++   K+EG V   
Sbjct: 87  LPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKE 146

Query: 130 KMMKVIFNLCEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
            +   I    +KA    +   ++ +M   +   P    YN V+ +         A  +  
Sbjct: 147 SLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFY 206

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P + T+  ++K FC    ++ A  L + M +HGC  N V Y  L+  + +  
Sbjct: 207 DMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCN 266

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  AL+LL EM   G  C P+  T+  VI   C    + EA  +++RM   G AP+ +T
Sbjct: 267 RVNEALQLLEEMFLMG--CVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDIT 324

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
              L+ G C  G +D A  L  ++     V     +++L+   V   RL +A+ + S M+
Sbjct: 325 YGYLMNGLCKIGRVDAAKDLFYRIPKPEIV----IFNTLIHGFVTHGRLDDAKAVLSDMV 380

Query: 369 AS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            S G+ PD    + +I      G V     +  D+   G   +V S  +++L+ G C+
Sbjct: 381 TSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYS--YTILVDGFCK 436



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 129/253 (50%), Gaps = 3/253 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C++ R+  EA+ + R+MP    +PD   +N++I   CE  ++  A  L++ M   
Sbjct: 465 LISAFCKEHRIP-EAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE 523

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  + +TY ++I  F   G +++A  L   M   G   + + Y++L+ G+CR G +++A
Sbjct: 524 GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKA 583

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  +M ++G   +P+ ++   +I   C  GM++EA+     M   G  P+ VT ++LI
Sbjct: 584 RSLFEKMLRDGH--APSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLI 641

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G +++   +  K+ A G       +++L+  L +   + +A  L  + +  G  
Sbjct: 642 NGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFV 701

Query: 374 PDGLACSVMIREL 386
           P+    S++++ +
Sbjct: 702 PNHRTWSILLQSI 714



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC ++ +  EA+   ++M      PD + +N++I   C  G +     + + +   
Sbjct: 605 LINGLC-RSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAE 663

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
            + PD +T+ +++   C  G + DAC L       G   N   +S LL  I    +++R
Sbjct: 664 GIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDR 722


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 191/436 (43%), Gaps = 72/436 (16%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  RI++    ++DV+E  ++   +        + ++  K + A+EA+  LR+  +   
Sbjct: 234 CKNRRIRE----VMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGF 289

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           + D + Y+ ++  +C++G M  A E++  M      PD++TY ++I GF  AG +  A  
Sbjct: 290 QVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARK 349

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV--- 277
           + + M +HGC  N V+Y+A L G+C+ G+   A E++   E++    +PN +TY+ V   
Sbjct: 350 MLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWW--TPNAITYSVVMHG 407

Query: 278 --------------------------------IQIFCGKGMMKEALGILDRMEALGCAPN 305
                                           +Q  C  G + EA   ++    +GCA N
Sbjct: 408 FRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVN 467

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  +T+I  FC + +++ A  L+D +           Y++++  L +  R++EA +L  
Sbjct: 468 AVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTL 527

Query: 366 KMLASGVKPDGLACSVMI---------------------RELCLGG--QVLEGFCLYEDI 402
           KML  G+ P  +    +I                     R+ C     QV+E  C + ++
Sbjct: 528 KMLKKGIDPTPVTYRTVIHRYGQIGRVEDLLNLLDKMLTRQECRTAFNQVIEKLCTFGNL 587

Query: 403 EKIGFL--------SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           E    L        S +D++   VL+    RK   + A K+A  M  + +       +K+
Sbjct: 588 EAADKLLGKVLRTASRIDANTCHVLMESYLRKGIPLSAYKVACRMFSRSLIPDLKLCEKV 647

Query: 455 VEHLKKSGDEELITNL 470
            + L + G  E   NL
Sbjct: 648 CKKLMQEGKSEEADNL 663



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 166/347 (47%), Gaps = 14/347 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C++ R++      ++++     +GC    V    V+  LC+  R+  E M V+ KM +  
Sbjct: 199 CDLHRVED----AMELISEMPLKGCSPDKVSYYTVMGFLCKNRRI-REVMDVIEKMEDTK 253

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L  D + YN +I + C+      A + ++         D + Y +++  +C  GR++ A 
Sbjct: 254 LLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAK 313

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +   M   GC  ++V Y+A+++G  + G + +A ++L +M K G  C PN V+YT+ ++
Sbjct: 314 EIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHG--CKPNTVSYTAFLK 371

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C KG   EA  ++   E     PN +T S ++ GF  EG L +A  ++ +++  G   
Sbjct: 372 GLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFP 431

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +    + L+  L R  R+ EA+K   + L  G   + +  + +I   C    +     L 
Sbjct: 432 TPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLL 491

Query: 400 EDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +D+    +LS+   D   ++ ++  L +K    EA +L   MLKK I
Sbjct: 492 DDM----YLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGI 534



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 179/380 (47%), Gaps = 22/380 (5%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMY---------NRACEMSRIKQNPSIIIDVVEAYKE 122
           S  ++ + FF W+  Q  YRH   +Y          + C+ +R      +   +    ++
Sbjct: 61  SDERVALDFFFWSDRQWRYRHDPIVYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQD 120

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
             CV+      V ++   K R    AM VL  M +  + P+ ++ N  I +      +  
Sbjct: 121 FCCVM------VSYSRAGKLR---NAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEK 171

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A   ++ M L+ + P+++TY  +IKG+C+  R+EDA  L   M   GC+ + V+Y  ++ 
Sbjct: 172 ALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMG 231

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            +C+   +   ++++ +M  E      + VTY ++I + C      EAL  L   +  G 
Sbjct: 232 FLCKNRRIREVMDVIEKM--EDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGF 289

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
             ++V  S ++  +C EG +D+A ++++++   G +     Y++++    +   + +A K
Sbjct: 290 QVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARK 349

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           +  +M   G KP+ ++ +  ++ LC  G   E   + +  E+  +  + ++  +SV++ G
Sbjct: 350 MLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWW--TPNAITYSVVMHG 407

Query: 423 LCRKNHSVEAAKLARFMLKK 442
             R+    +A  + R M+ K
Sbjct: 408 FRREGKLSDACDVVREMIGK 427



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 138/304 (45%), Gaps = 4/304 (1%)

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
           K N S   ++++A +E+    +     V+ +   +    ++A  V+R+M      P  + 
Sbjct: 376 KGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFPTPVE 435

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
            N +++  C  G +  A + M+    +    + + + ++I  FC    +E A  L   M 
Sbjct: 436 INLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMY 495

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
                 + V Y+ ++D + + G +E A EL  +M K+G D +P  VTY +VI  +   G 
Sbjct: 496 LSNKHPDAVTYTTIIDALGKKGRIEEATELTLKMLKKGIDPTP--VTYRTVIHRYGQIGR 553

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +++ L +LD+M  L     R   + +I+  C  GNL+ A +L+ KV+   S         
Sbjct: 554 VEDLLNLLDKM--LTRQECRTAFNQVIEKLCTFGNLEAADKLLGKVLRTASRIDANTCHV 611

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+   +R      A K+  +M +  + PD   C  + ++L   G+  E   L+    + G
Sbjct: 612 LMESYLRKGIPLSAYKVACRMFSRSLIPDLKLCEKVCKKLMQEGKSEEADNLFLRFVERG 671

Query: 407 FLSS 410
            +SS
Sbjct: 672 NISS 675


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 148/271 (54%), Gaps = 4/271 (1%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
            N +  + V E  K++G   SV     +I  LC + ++  E + ++ +M +  L P+ I 
Sbjct: 278 SNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKV-EEGVKLMEEMEDLGLSPNEIT 336

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           +  V++ FC+KG M  A++ + GM   ++ PD++ Y  +I  +   G++EDA  + + M 
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMA 396

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           + G + N+  Y+ L+ G  R G    A  LL EM+++G     +VVTY  +I   C KG 
Sbjct: 397 KKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKG--IEADVVTYNVLIGALCCKGE 454

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +++A+ +LD M  +G  PN +T +T+I+GFC +GN+  AY++  ++      ++   Y+ 
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNV 514

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +    +  ++ EA  L ++ML   + P+G+
Sbjct: 515 FIKYFCQIGKMDEANDLLNEMLDKCLVPNGI 545



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 158/313 (50%), Gaps = 8/313 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADELMKGM 190
           VI  LC   +L  +A  V + +  + L P    YN++I  +C+KG   +M   D L+K M
Sbjct: 197 VISGLCRIGQL-RKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEM 255

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + P  +T+  +I G+C       A  +F+ MK+ G AA++V Y++L+ G+C  G +
Sbjct: 256 VEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKV 315

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E  ++L+ EME  G   SPN +T+  V++ FC KGMM +A   +D M      P+ V  +
Sbjct: 316 EEGVKLMEEMEDLG--LSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYN 373

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            LI  +   G +++A  + + +   G   +   Y+ L+    R+   + A  L  +M   
Sbjct: 374 ILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK 433

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G++ D +  +V+I  LC  G+V +   L +++ ++G     +   ++ ++ G C K +  
Sbjct: 434 GIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGL--EPNHLTYNTIIQGFCDKGNIK 491

Query: 431 EAAKLARFMLKKR 443
            A ++   M K R
Sbjct: 492 SAYEIRTRMEKCR 504



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 125/248 (50%), Gaps = 19/248 (7%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+   C+K  +A+   W+   M E ++ PD +IYN +I ++   G M  A  + + M   
Sbjct: 340 VLKGFCKKGMMADANDWI-DGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKK 398

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P++ TY  +I GF  +G    A GL   MK  G  A++V Y+ L+  +C  G + +A
Sbjct: 399 GISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKA 458

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++LL EM + G    PN +TY ++IQ FC KG +K A  I  RME      N VT +  I
Sbjct: 459 VKLLDEMSEVG--LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI 516

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           K FC  G +DEA  L+++++    V +G  Y +          +KE       M+  G  
Sbjct: 517 KYFCQIGKMDEANDLLNEMLDKCLVPNGITYET----------IKEG------MMEKGYT 560

Query: 374 PDGLACSV 381
           PD   C+V
Sbjct: 561 PDIRGCTV 568



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 133/277 (48%), Gaps = 7/277 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC---NAGRLEDA 218
           PD   +N VI   C  G +  A ++ K +    L P + TY S+I G+C    AG +   
Sbjct: 189 PDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHV 248

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L K M   G +   V +  L++G C+  +   A+ +  EM+++G   + +VVTY S+I
Sbjct: 249 DMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQG--IAASVVTYNSLI 306

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C +G ++E + +++ ME LG +PN +T   ++KGFC +G + +A   ID +      
Sbjct: 307 SGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE 366

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y+ L+    R  ++++A  +   M   G+ P+    + +I      G       L
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +++++ G     D   ++VL+  LC K    +A KL
Sbjct: 427 LDEMKEKGI--EADVVTYNVLIGALCCKGEVRKAVKL 461



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 127/272 (46%), Gaps = 11/272 (4%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P   +  +++ G   A R++ A   F+   R   + ++  ++ ++ G+CR+G + +A ++
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFC---GKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +++  G   +P+V TY S+I  +C   G G M     +L  M   G +P  VT   LI
Sbjct: 214 AKDIKAWG--LAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C   N   A ++ +++   G  +S   Y+SL+  L    +++E  KL  +M   G+ 
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVE 431
           P+ +    +++  C  G + +     + + +     +V+ D  I+++L+    R     +
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTE----RNVEPDVVIYNILIDVYRRLGKMED 387

Query: 432 AAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           A  +   M KK I       + ++    +SGD
Sbjct: 388 AMAVKEAMAKKGISPNVTTYNCLITGFSRSGD 419



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 4/178 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V EA  ++G   +V     +     ++     A  +L +M E  +  D + YN +I   C
Sbjct: 391 VKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALC 450

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            KG++  A +L+  M  + L P+ +TY ++I+GFC+ G ++ A  +   M++    AN+V
Sbjct: 451 CKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVV 510

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDC-SPNVVTYTSVIQIFCGKGMMKEALG 292
            Y+  +   C++G M+ A +LL EM  +   C  PN +TY ++ +    KG   +  G
Sbjct: 511 TYNVFIKYFCQIGKMDEANDLLNEMLDK---CLVPNGITYETIKEGMMEKGYTPDIRG 565


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 155/307 (50%), Gaps = 12/307 (3%)

Query: 148 AMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           A+ +LRKM E   ++P+ +IY+ +I    + G    A  L   M    ++PD+ TY  MI
Sbjct: 232 ALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMI 291

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC++GR  +A  L + M       N+V YSAL++   +      A EL  EM   G  
Sbjct: 292 DGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRG-- 349

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PN +TY S+I  FC +  +  A  +   M   GC+P+  T +TLI G+C    +D+  
Sbjct: 350 IIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGT 409

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+ ++   G V+    Y++L+        L  A  L  +M++SGV PD + C+ ++  L
Sbjct: 410 ELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 469

Query: 387 CLGGQVLEGFCLYEDIEKIGF-------LSSVDSDI--HSVLLLGLCRKNHSVEAAKLAR 437
           C  G++ +   +++ ++K           + V+ D+  +++L+ GL  +   +EA +L +
Sbjct: 470 CDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYK 529

Query: 438 FMLKKRI 444
            M  + I
Sbjct: 530 EMPHRGI 536



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 144/292 (49%), Gaps = 13/292 (4%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC   V     + +    A+  ++   +L +M E  L  DT  YN +I  FC  GD+ A
Sbjct: 383 KGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNA 442

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCA 231
           A +L + M    + PDI+T  +++ G C+ G+L+DA  +FK M++           +G  
Sbjct: 443 ALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVE 502

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            ++  Y+ L+ G+   G    A EL  EM   G    PN +TY+S+I   C +  + EA 
Sbjct: 503 PDVQTYNILISGLINEGKFLEAEELYKEMPHRG--IVPNTITYSSMINGLCKQSRLDEAT 560

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            + D M +   +P+ VT +TL+ G+C  G +D+  +L  ++   G V+    Y +L+   
Sbjct: 561 QMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGF 620

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
            +   +  A  +F +M++SGV PD +    M+  L    ++     + ED++
Sbjct: 621 RKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 161/341 (47%), Gaps = 16/341 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R + EA  +L++M E  + P+ + Y+ +I  + ++     A+EL   M   
Sbjct: 290 MIDGFCSSGRWS-EAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPR 348

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ ITY SMI GFC   RL+ A  +F VM   GC+ ++  ++ L+DG C    ++  
Sbjct: 349 GIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDG 408

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ELL EM + G     +  TY ++I  FC  G +  AL +  +M + G  P+ VT +TL+
Sbjct: 409 TELLHEMTETG--LVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLL 466

Query: 314 KGFCVEGNLDEAYQLI-----DKVVAGGSVSSGG------CYSSLVVELVRTKRLKEAEK 362
            G C  G L +A ++       K+    S    G       Y+ L+  L+   +  EAE+
Sbjct: 467 DGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEE 526

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           L+ +M   G+ P+ +  S MI  LC   ++ E   +++ +    F  S D    + L+ G
Sbjct: 527 LYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSF--SPDVVTFNTLVSG 584

Query: 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            C+     +  +L   M ++ I         ++   +K G+
Sbjct: 585 YCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGN 625



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 152/317 (47%), Gaps = 16/317 (5%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V     + N   K R   EA  +  +M    + P+TI YN++I  FC++  + AA+ + 
Sbjct: 318 NVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMF 377

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M      PD+ T+ ++I G+C A R++D   L   M   G  A+   Y+ L+ G C +
Sbjct: 378 YVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLV 437

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL------- 300
           G +  AL+L  +M   G    P++VT  +++   C  G +K+AL +   M+         
Sbjct: 438 GDLNAALDLSQQMISSG--VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDAS 495

Query: 301 ----GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
               G  P+  T + LI G   EG   EA +L  ++   G V +   YSS++  L +  R
Sbjct: 496 RPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSR 555

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
           L EA ++F  M +    PD +  + ++   C  G+V +G  L+ ++ + G ++  D+  +
Sbjct: 556 LDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVA--DAITY 613

Query: 417 SVLLLGLCRKNHSVEAA 433
             L+ G  RK  ++  A
Sbjct: 614 ITLIHGF-RKVGNINGA 629



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 149/313 (47%), Gaps = 10/313 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC + R++ EA+ +  +M     RP+ + +  ++   C +G ++ A  L+ 
Sbjct: 148 VTFSTLLHGLCVEDRVS-EALDLFHQM----CRPNVVTFTTLMNGLCREGRVVEAVALLD 202

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGICRL 247
            M    L P+ ITY +++ G C  G    A  L + M+       N+V YSA++DG+ + 
Sbjct: 203 RMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKD 262

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    A  L  EM+++G    P++ TY  +I  FC  G   EA  +L  M      PN V
Sbjct: 263 GRHSDAHNLYTEMQEKG--IFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVV 320

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S LI  +  E    EA +L D+++  G + +   Y+S++    +  RL  AE +F  M
Sbjct: 321 TYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVM 380

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  PD    + +I   C   ++ +G  L  ++ + G ++  D+  ++ L+ G C   
Sbjct: 381 ATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVA--DTTTYNTLIHGFCLVG 438

Query: 428 HSVEAAKLARFML 440
               A  L++ M+
Sbjct: 439 DLNAALDLSQQMI 451



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           +KM    +  D   +N +I+ FC    +  A      +  +   PD++T+ +++ G C  
Sbjct: 101 QKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVE 160

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            R+ +A  LF  M    C  N+V ++ L++G+CR G +  A+ LL  M ++G    PN +
Sbjct: 161 DRVSEALDLFHQM----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDG--LQPNQI 214

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           TY +++   C  G    AL +L +ME +    PN V  S +I G   +G   +A+ L  +
Sbjct: 215 TYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTE 274

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +   G       Y+ ++     + R  EA++L  +ML   + P+ +  S +I       +
Sbjct: 275 MQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERK 334

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             E   LY+++   G + +  +  ++ ++ G C++N    A  +   M  K
Sbjct: 335 FFEAEELYDEMLPRGIIPNTIT--YNSMIDGFCKQNRLDAAEHMFYVMATK 383



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 142/288 (49%), Gaps = 17/288 (5%)

Query: 162 PDTIIYNN----VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           P  I +N     V+R+  E+ D++ +  L + M    +  D+ ++  +IK FC+  +L  
Sbjct: 75  PSVIDFNKLMGVVVRM--ERPDLVIS--LYQKMERKQIPCDVYSFNILIKCFCSCSKLPF 130

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A   F  + + G   ++V +S LL G+C    +  AL+L  +M      C PNVVT+T++
Sbjct: 131 ALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM------CRPNVVTFTTL 184

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +   C +G + EA+ +LDRM   G  PN++T  T++ G C  G+   A  L+ K+     
Sbjct: 185 MNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSH 244

Query: 338 VSSGGC-YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
           +      YS+++  L +  R  +A  L+++M   G+ PD    + MI   C  G+  E  
Sbjct: 245 IKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQ 304

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            L +++ +     +V +  +S L+    ++    EA +L   ML + I
Sbjct: 305 RLLQEMLERKINPNVVT--YSALINAYVKERKFFEAEELYDEMLPRGI 350



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 14/216 (6%)

Query: 138 LCEKARLANEAMWVLRKM-----------PEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           LC+  +L  +A+ + + M           P   + PD   YN +I     +G  + A+EL
Sbjct: 469 LCDNGKL-KDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEEL 527

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
            K M    + P+ ITY SMI G C   RL++A  +F  M     + ++V ++ L+ G C+
Sbjct: 528 YKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCK 587

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G ++  LEL  EM + G     + +TY ++I  F   G +  AL I   M + G  P+ 
Sbjct: 588 AGRVDDGLELFCEMGRRG--IVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDT 645

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
           +TI +++     +  L  A  +++ +     +S GG
Sbjct: 646 ITIRSMLTVLWSKEELKRAVAMLEDLQMSMDLSFGG 681



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 7/238 (2%)

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF     LEDA  LF  M R     +++ ++ L+  + R+   +  + L  +ME++   C
Sbjct: 51  GFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPC 110

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             +V ++  +I+ FC    +  AL    ++  LG  P+ VT STL+ G CVE  + EA  
Sbjct: 111 --DVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALD 168

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  ++     V+    +++L+  L R  R+ EA  L  +M+  G++P+ +    ++  +C
Sbjct: 169 LFHQMCRPNVVT----FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 224

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
             G  +    L   +E++  +   +  I+S ++ GL +     +A  L   M +K I+
Sbjct: 225 KIGDTVSALNLLRKMEEMSHIKP-NVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIF 281


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 157/307 (51%), Gaps = 12/307 (3%)

Query: 148 AMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           A+ +LRKM E   ++P+ +IY+ +I   C+ G    +  L   M    ++P+I+TY  MI
Sbjct: 236 ALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMI 295

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC +GR   A  L + M     + N+V Y+AL++   + G    A EL  EM   G  
Sbjct: 296 GGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG-- 353

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PN +TY S+I  FC +  +  A  +   M   GC+P+  T +TLI G+C    +D+  
Sbjct: 354 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM 413

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+ ++   G V++   Y++L+        L  A  L  +M++SGV PD + C+ ++  L
Sbjct: 414 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 473

Query: 387 CLGGQVLEGFCLYE-------DIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLAR 437
           C  G++ +   +++       D++     + V+ D+  +++L+ GL  +   +EA +L  
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYE 533

Query: 438 FMLKKRI 444
            M  + I
Sbjct: 534 EMPHRGI 540



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 151/298 (50%), Gaps = 16/298 (5%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M    + P+TI YN++I  FC++  + AA+++   M      PD+ T+ ++I
Sbjct: 341 EAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLI 400

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C A R++D   L   M R G  AN V Y+ L+ G C +G +  AL+L  +M   G  
Sbjct: 401 DGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG-- 458

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----------GCAPNRVTISTLIKG 315
             P++VT  +++   C  G +K+AL +   M+             G  P+ +T + LI G
Sbjct: 459 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICG 518

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
              EG   EA +L +++   G V     YSS++  L +  RL EA ++F  M +    P+
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            +  + +I   C  G+V +G  L+ ++ + G ++  D+ I+  L+ G  RK  ++  A
Sbjct: 579 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVA--DAIIYITLIYGF-RKVGNINGA 633



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 147/299 (49%), Gaps = 15/299 (5%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  +L++M E  + P+ + YN +I  F ++G    A EL   M    + P+ ITY SMI 
Sbjct: 307 AQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 366

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC   RL+ A  +F +M   GC+ ++  ++ L+DG C    ++  +ELL EM + G   
Sbjct: 367 GFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRG--L 424

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             N VTY ++I  FC  G +  AL +  +M + G  P+ VT +TL+ G C  G L +A +
Sbjct: 425 VANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 484

Query: 328 LI-----DKVVAGGSVSSGG------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           +       K+    S    G       Y+ L+  L+   +  EAE+L+ +M   G+ PD 
Sbjct: 485 MFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDT 544

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +  S MI  LC   ++ E   ++  +    F  +V +   + L+ G C+     +  +L
Sbjct: 545 ITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVT--FNTLINGYCKAGRVDDGLEL 601



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 150/301 (49%), Gaps = 23/301 (7%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           D+      +GC   V     + +    A+  ++ M +L +MP   L  +T+ YN +I  F
Sbjct: 379 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 438

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR------- 227
           C  GD+ AA +L + M    + PDI+T  +++ G C+ G+L+DA  +FK M++       
Sbjct: 439 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDA 498

Query: 228 ----HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
               +G   +++ Y+ L+ G+   G    A EL  EM   G    P+ +TY+S+I   C 
Sbjct: 499 SHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG--IVPDTITYSSMIDGLCK 556

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
           +  + EA  +   M +   +PN VT +TLI G+C  G +D+  +L  ++   G V+    
Sbjct: 557 QSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAII 616

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y +L+    +   +  A  +F +M++SGV PD    ++ IR +      L GF   E++E
Sbjct: 617 YITLIYGFRKVGNINGALDIFQEMISSGVYPD----TITIRNM------LTGFWSKEELE 666

Query: 404 K 404
           +
Sbjct: 667 R 667



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 150/317 (47%), Gaps = 10/317 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC   R++ EA+ +  ++     RPD + +  ++   C +G ++ A  L+ 
Sbjct: 152 VTFTTLLHGLCLDHRVS-EALDLFHQI----CRPDVLTFTTLMNGLCREGRVVEAVALLD 206

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRL 247
            M    L PD ITY + + G C  G    A  L + M+       N+V YSA++DG+C+ 
Sbjct: 207 RMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKD 266

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    +  L  EM+ +G    PN+VTY  +I  FC  G    A  +L  M     +PN V
Sbjct: 267 GRHSDSHNLFIEMQDKG--IFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVV 324

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + LI  F  EG   EA +L D+++  G + +   Y+S++    +  RL  AE +F  M
Sbjct: 325 TYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM 384

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  PD    + +I   C   ++ +G  L  ++ + G +++  +  ++ L+ G C   
Sbjct: 385 ATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVT--YNTLIHGFCLVG 442

Query: 428 HSVEAAKLARFMLKKRI 444
               A  L++ M+   +
Sbjct: 443 DLNAALDLSQQMISSGV 459



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 119/266 (44%), Gaps = 32/266 (12%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI------ 206
           +KM    +R D   +  +I+ FC    +  A      +  + L+PD++T+ +++      
Sbjct: 105 QKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLD 164

Query: 207 -------------------------KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
                                     G C  GR+ +A  L   M  +G   + + Y   +
Sbjct: 165 HRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFV 224

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG+C++G    AL LL +ME E     PNVV Y+++I   C  G   ++  +   M+  G
Sbjct: 225 DGMCKMGDTVSALNLLRKME-EISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKG 283

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN VT + +I GFC+ G    A +L+ +++      +   Y++L+   V+  +  EA 
Sbjct: 284 IFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA 343

Query: 362 KLFSKMLASGVKPDGLACSVMIRELC 387
           +L+ +ML  G+ P+ +  + MI   C
Sbjct: 344 ELYDEMLPRGIIPNTITYNSMIDGFC 369



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 142/288 (49%), Gaps = 17/288 (5%)

Query: 162 PDTIIYNN----VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           P  I +N     V+R+  E+ D++ +  L + M    +  DI ++  +IK FC+  +L  
Sbjct: 79  PSVIDFNKLMGAVVRM--ERPDLVIS--LYQKMERKQIRCDIYSFTILIKCFCSCSKLPF 134

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A   F  + + G   ++V ++ LL G+C    +  AL+L  ++      C P+V+T+T++
Sbjct: 135 ALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI------CRPDVLTFTTL 188

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +   C +G + EA+ +LDRM   G  P+++T  T + G C  G+   A  L+ K+     
Sbjct: 189 MNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISH 248

Query: 338 VSSGGC-YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
           +      YS+++  L +  R  ++  LF +M   G+ P+ +  + MI   C+ G+     
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            L +++ +     +V +  ++ L+    ++    EAA+L   ML + I
Sbjct: 309 RLLQEMLERKISPNVVT--YNALINAFVKEGKFFEAAELYDEMLPRGI 354



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 14/206 (6%)

Query: 138 LCEKARLANEAMWVLRKM-----------PEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           LC+  +L  +A+ + + M           P   + PD + YN +I     +G  + A+EL
Sbjct: 473 LCDNGKL-KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEEL 531

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
            + M    + PD ITY SMI G C   RL++A  +F  M     + N+V ++ L++G C+
Sbjct: 532 YEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCK 591

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G ++  LEL  EM + G     + + Y ++I  F   G +  AL I   M + G  P+ 
Sbjct: 592 AGRVDDGLELFCEMGRRG--IVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDT 649

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKV 332
           +TI  ++ GF  +  L+ A  +++ +
Sbjct: 650 ITIRNMLTGFWSKEELERAVAMLEDL 675



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 85/152 (55%), Gaps = 2/152 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +MP   + PDTI Y+++I   C++  +  A ++   MG     P+++T+ ++I
Sbjct: 527 EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 586

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C AGR++D   LF  M R G  A+ + Y  L+ G  ++G++  AL++  EM   G  
Sbjct: 587 NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG-- 644

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
             P+ +T  +++  F  K  ++ A+ +L+ ++
Sbjct: 645 VYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 1/138 (0%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++    +I  LC+++RL +EA  +   M      P+ + +N +I  +C+ G +    EL 
Sbjct: 544 TITYSSMIDGLCKQSRL-DEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELF 602

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             MG   +  D I Y+++I GF   G +  A  +F+ M   G   + +    +L G    
Sbjct: 603 CEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSK 662

Query: 248 GSMERALELLGEMEKEGG 265
             +ERA+ +L +++   G
Sbjct: 663 EELERAVAMLEDLQMSVG 680



 Score = 39.3 bits (90), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           +L  A   F K+   G+ PD +  + ++  LCL  +V E   L+  I +   L+      
Sbjct: 131 KLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLT------ 184

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            + L+ GLCR+   VEA  L   M++  +          V+ + K GD     NL
Sbjct: 185 FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNL 239


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 149/319 (46%), Gaps = 37/319 (11%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R A +A+ +LR M      PD ++Y  VI     +G +  A  L+  M L+    
Sbjct: 190 LCRLGR-ARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAA 248

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---------- 247
           D+ T+  ++ G C  G + +A  L   M  HGC  ++V Y  LL G+CR           
Sbjct: 249 DVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAML 308

Query: 248 ---------------------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
                                G + RA EL   M  +G  C P+V TY  ++   C  G 
Sbjct: 309 GRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKG--CPPDVHTYNILMHGLCKLGR 366

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
              A+ +LD ME  GCAPN VT STL+  FC  G  D+A  ++D++ A G   +   Y+ 
Sbjct: 367 CGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNG 426

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++  L +  +L EA +L  +M + G KPD    + +I  LC   Q+ E   ++ ++ + G
Sbjct: 427 IIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEG 486

Query: 407 FLS---SVDSDIHSVLLLG 422
            ++   + ++ IH++L  G
Sbjct: 487 VVANGITYNTLIHALLHSG 505



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 152/345 (44%), Gaps = 43/345 (12%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +V+     GC  SV     +     + R A+EA  +L ++PE ++    ++ N VIR   
Sbjct: 272 LVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNV----VMLNTVIRGCL 327

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            +G +  A EL + MG     PD+ TY  ++ G C  GR   A  +   M+  GCA N+V
Sbjct: 328 AEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIV 387

Query: 236 AYSALLDGICRLG-----------------------------------SMERALELLGEM 260
            YS LL   CR G                                    ++ A+ L+ EM
Sbjct: 388 TYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEM 447

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           + +G  C P++ TY ++I   C    M EA  I   +   G   N +T +TLI      G
Sbjct: 448 KSQG--CKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSG 505

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
              E  +L +++V  G       Y+ L+  L +   +  +  L  +M+  G+KP+  + +
Sbjct: 506 RWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYN 565

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           ++I ELC  G+V +   L +++   G   + D   ++ L+ GLC+
Sbjct: 566 MLINELCKAGKVRDALELSKEMLNQGL--TPDIVTYNTLINGLCK 608



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 4/239 (1%)

Query: 116 VVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +V+  K +GC   +     +I++LC   ++ +EA  +   + E  +  + I YN +I   
Sbjct: 443 LVQEMKSQGCKPDICTYNTIIYHLCNNDQM-DEAEHIFGNLLEEGVVANGITYNTLIHAL 501

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
              G       L   M L     D+++Y  +IK  C  G ++ +  L + M   G   N 
Sbjct: 502 LHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNN 561

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
            +Y+ L++ +C+ G +  ALEL  EM  +G   +P++VTY ++I   C  G    AL +L
Sbjct: 562 FSYNMLINELCKAGKVRDALELSKEMLNQG--LTPDIVTYNTLINGLCKVGWTHAALNLL 619

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           +++      P+ VT + LI   C    LD+A  L+DK V+GG V +   +  +V   VR
Sbjct: 620 EKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMVQNFVR 678



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 141/312 (45%), Gaps = 8/312 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           S +    + +   +A    +A+ + R+M    + P T  +    R  C  G    A  L+
Sbjct: 144 SFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALL 203

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           +GM      PD + Y ++I      G + +A  L   M   GCAA++  ++ ++ G+C L
Sbjct: 204 RGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGL 263

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +  A  L+  M   G  C+P+VVTY  +++  C      EA  +L R+  +    N V
Sbjct: 264 GHVREAARLVDRMMMHG--CTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEV----NVV 317

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            ++T+I+G   EG L  A +L + + + G       Y+ L+  L +  R   A ++  +M
Sbjct: 318 MLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEM 377

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  P+ +  S ++   C  G   +   + + +   GF  S++S  ++ ++  L +  
Sbjct: 378 EEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGF--SMNSQGYNGIIYALGKDG 435

Query: 428 HSVEAAKLARFM 439
              EA +L + M
Sbjct: 436 KLDEAMRLVQEM 447



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 127/274 (46%), Gaps = 2/274 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + +++  +E+GC  ++     + +   +  + ++A  +L +M       ++  YN +I  
Sbjct: 371 VRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYA 430

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             + G +  A  L++ M      PDI TY ++I   CN  ++++A  +F  +   G  AN
Sbjct: 431 LGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVAN 490

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            + Y+ L+  +   G  +  L L  EM   G  C  +VV+Y  +I+  C +G +  ++ +
Sbjct: 491 GITYNTLIHALLHSGRWQEGLRLANEMVLHG--CPLDVVSYNGLIKALCKEGNVDRSMML 548

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L+ M   G  PN  + + LI   C  G + +A +L  +++  G       Y++L+  L +
Sbjct: 549 LEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCK 608

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
                 A  L  K+    V PD +  +++I   C
Sbjct: 609 VGWTHAALNLLEKLPNENVHPDIVTYNILISWHC 642



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 8/246 (3%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P   +Y +++     A    DA  L++ M R         +      +CRLG    AL L
Sbjct: 143 PSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDALAL 202

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M + G  C P+ V Y +VI     +G + EA  +LD M  +GCA +  T + ++ G 
Sbjct: 203 LRGMARHG--CVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGL 260

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G++ EA +L+D+++  G   S   Y  L+  L RT++  EA  +  ++    V    
Sbjct: 261 CGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNV---- 316

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +IR     G++     LYE +   G     D   +++L+ GLC+      A ++ 
Sbjct: 317 VMLNTVIRGCLAEGKLARATELYEMMGSKG--CPPDVHTYNILMHGLCKLGRCGSAVRML 374

Query: 437 RFMLKK 442
             M +K
Sbjct: 375 DEMEEK 380



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 2/185 (1%)

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L ++ +R     +  +Y+A+L  + R      AL L   M ++     P   T+    + 
Sbjct: 132 LDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRD--RVPPTTFTFGVAARA 189

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G  ++AL +L  M   GC P+ V   T+I     +G + EA  L+D+++  G  + 
Sbjct: 190 LCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAAD 249

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ +V+ L     ++EA +L  +M+  G  P  +    ++R LC   Q  E + +  
Sbjct: 250 VNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLG 309

Query: 401 DIEKI 405
            + ++
Sbjct: 310 RVPEV 314


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 178/394 (45%), Gaps = 10/394 (2%)

Query: 71  PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVK 130
           P      +  F  A LQ  Y HS  +Y    +         +I  +++  K+EGCV    
Sbjct: 71  PLDVPTSMDLFEKAGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKES 130

Query: 131 MMKVIFNLCEKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           +  +I     KA L  +A  +L  M   +   P    YN V+ +         A  +   
Sbjct: 131 LFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYD 190

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M    + P + T+  ++K FC    ++ AC L + M +HGC  N + Y  L+  +     
Sbjct: 191 MLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNR 250

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           +  A++LL EM   G  C P+V T+  VI   C  G + EA  + DRM       + +  
Sbjct: 251 VNEAMKLLEEMFLMG--CEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQ 308

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK-ML 368
             L+ G C  G +DEA  ++ K+    +V     Y++L+   V + R +EA+ L  K M+
Sbjct: 309 GYLMHGLCRMGKVDEARAMLSKIPNPNTV----LYNTLINGYVVSGRFEEAKDLLYKNMV 364

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
            +G +PD    ++MI  LC  G ++      +++ K GF  +V +  +++L+ G C++ H
Sbjct: 365 IAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVIT--YTILIDGFCKQGH 422

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
             EA+K+   M  K + L     + ++  L K G
Sbjct: 423 FEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDG 456



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 151/306 (49%), Gaps = 10/306 (3%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM-KGMGLIDLY 196
           LC   ++ +EA  +L K+P     P+T++YN +I  +   G    A +L+ K M +    
Sbjct: 315 LCRMGKV-DEARAMLSKIP----NPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFE 369

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD  T+  MI G C  G L  A      M + G   N++ Y+ L+DG C+ G  E A ++
Sbjct: 370 PDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKV 429

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           +  M  +G   S N V Y  +I   C  G +++AL +   M + GC P+  T ++LI G 
Sbjct: 430 VNSMSAKG--LSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGL 487

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    ++EA  L   ++  G +++   Y++L+   +R + +++A+KL  +M   G   D 
Sbjct: 488 CKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDN 547

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I+ LC  G   +   L E +       S++S   ++L+   CR     +A +  
Sbjct: 548 ITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINS--CNILINSFCRTGKVNDALQFL 605

Query: 437 RFMLKK 442
           R M+++
Sbjct: 606 RDMIQR 611



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 160/331 (48%), Gaps = 16/331 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C++     EA  V+  M    L  +T+ YN +I   C+ G +  A ++   M   
Sbjct: 413 LIDGFCKQGHFE-EASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSK 471

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PDI T+ S+I G C   ++E+A GL++ M   G  AN V Y+ L+    RL  +++A
Sbjct: 472 GCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQA 531

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L+GEM   G  C  + +TY  +I+  C  G  ++ LG++++M      P+  + + LI
Sbjct: 532 DKLVGEMRFRG--CPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILI 589

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             FC  G +++A Q +  ++  G       Y+SL+  L +  R +EA  LF+ + A G+ 
Sbjct: 590 NSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIH 649

Query: 374 PDGLACSVMIRELCLGGQVLEGFC--LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           PD +  + +I   C  G +    C  L++ +   GF   + ++I   +L+    KN+S +
Sbjct: 650 PDAVTYNTLISRYCYEG-LFNDACQLLFKGVSN-GF---IPNEITWSILINYFVKNNS-D 703

Query: 432 AAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           + +    M     WL       I+ H+   G
Sbjct: 704 SEQFTILMGNWGFWLAA-----IIRHVSSIG 729



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 177/368 (48%), Gaps = 17/368 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C ++ +    S++ D+ +     GCV +  + +++ +   +    NEAM +L +M     
Sbjct: 211 CMVNEVDSACSLLRDMTK----HGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGC 266

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   +N+VI   C+ G +  A +L   M L D   D +    ++ G C  G++++A  
Sbjct: 267 EPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARA 326

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +   +       N V Y+ L++G    G  E A +LL +     G   P+  T+  +I  
Sbjct: 327 MLSKIPN----PNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAG-FEPDAFTFNIMIDG 381

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C KG +  AL  LD M   G  PN +T + LI GFC +G+ +EA ++++ + A G   +
Sbjct: 382 LCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLN 441

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ L+  L +  ++++A +++ +M + G KPD    + +I  LC   ++ E   LY 
Sbjct: 442 TVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYR 501

Query: 401 DIEKIGFLSSV---DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457
           D+   G +++    ++ IH+ L L L +     +A KL   M  +   L     + +++ 
Sbjct: 502 DMLLEGVIANTVTYNTLIHAFLRLELIQ-----QADKLVGEMRFRGCPLDNITYNGLIKA 556

Query: 458 LKKSGDEE 465
           L K+G  E
Sbjct: 557 LCKTGATE 564


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 165/334 (49%), Gaps = 9/334 (2%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           S  +DV      +G   S+K    + +   KA    +   V R M E    PD   + NV
Sbjct: 191 SCAVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSE-GACPDVFSFTNV 249

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I   C+ G M  A EL   M  + + P+++TY  +I G C  GRL++A  L + M   G 
Sbjct: 250 INALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGV 309

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             NL  Y AL++G+ +L   ++   +L EM   G +  PNVV + ++I  +C  G ++ A
Sbjct: 310 QPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFN--PNVVVFNNLIDGYCKMGNIEGA 367

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVV 349
           L I D M +    P  VT+ +L++GFC    ++ A   ++++++ G S+    CY S+V 
Sbjct: 368 LKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCY-SVVH 426

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL-YEDIEKIGFL 408
            L +  R   A +    ML+   +P  L  ++++  LC  G+ LE   L +  +EK    
Sbjct: 427 WLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPA 486

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           S V S+    L+ GLC      EA+++ + ML++
Sbjct: 487 SKVTSN---ALIHGLCGAGKLPEASRIVKEMLER 517



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 154/302 (50%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   +L  EA  ++++M E  L  D I YN +I  FC +G +     L + M   
Sbjct: 494 LIHGLCGAGKLP-EASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKR 552

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PDI TY  +++G CN G+L+DA  L+   K  G  +N+  Y  +++G C+   +E  
Sbjct: 553 GIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDV 612

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  E+  +  +   N + Y  +I+  C  G +  AL +L+ M++ G  PN  T S+LI
Sbjct: 613 ENLFNELLSKKMEL--NSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLI 670

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G +++A  LID++   G V +  CY++L+    +  ++  AE  + +M++  + 
Sbjct: 671 HGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIH 730

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    +VMI   C  G + +   L   +++ G +  V +  ++VL  G C+ N    A 
Sbjct: 731 PNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVT--YNVLTNGFCKANDMDNAF 788

Query: 434 KL 435
           K+
Sbjct: 789 KV 790



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 139/280 (49%), Gaps = 11/280 (3%)

Query: 69  CFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS 128
           CF  + +M  R      +Q      +F+    C + ++       I + + +K  G + +
Sbjct: 542 CFRLREEMTKR-----GIQPDIYTYNFLLRGLCNVGKLDD----AIKLWDEFKASGLISN 592

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           +    ++     KA    +   +  ++    +  ++I+YN +I+  C+ G++ AA +L++
Sbjct: 593 IHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLE 652

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P+  TY S+I G CN G +EDA  L   M++ G   N+V Y+AL+ G C+LG
Sbjct: 653 NMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLG 712

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            M+ A     EM     +  PN  TYT +I  +C  G M++A  +L +M+  G  P+ VT
Sbjct: 713 QMDTAESTWLEM--ISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVT 770

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            + L  GFC   ++D A+++ D++   G       Y++LV
Sbjct: 771 YNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 810



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 132/324 (40%), Gaps = 61/324 (18%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           M  R   M RI  N ++I+      K EGC                 RL  E       M
Sbjct: 514 MLERGLPMDRITYN-ALILGFCNEGKVEGCF----------------RLREE-------M 549

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            +  ++PD   YN ++R  C  G +  A +L        L  +I TY  M++G+C A R+
Sbjct: 550 TKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRI 609

Query: 216 EDACGLF-----------------------------------KVMKRHGCAANLVAYSAL 240
           ED   LF                                   + MK  G   N   YS+L
Sbjct: 610 EDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSL 669

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G+C +G +E A  L+ EM KEG    PNVV YT++I  +C  G M  A      M + 
Sbjct: 670 IHGVCNIGLVEDAKHLIDEMRKEG--FVPNVVCYTALIGGYCKLGQMDTAESTWLEMISF 727

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
              PN+ T + +I G+C  GN+++A  L+ K+   G V     Y+ L     +   +  A
Sbjct: 728 NIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNA 787

Query: 361 EKLFSKMLASGVKPDGLACSVMIR 384
            K+  +M   G+  D +  + ++ 
Sbjct: 788 FKVCDQMATEGLPVDEITYTTLVH 811



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 131/267 (49%), Gaps = 7/267 (2%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           + PD     +V+   C+K    +A    K M   +  P  +    ++ G C  G+  +A 
Sbjct: 416 IHPDNCY--SVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEAT 473

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L+  +   G  A+ V  +AL+ G+C  G +  A  ++ EM + G     + +TY ++I 
Sbjct: 474 ELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERG--LPMDRITYNALIL 531

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            FC +G ++    + + M   G  P+  T + L++G C  G LD+A +L D+  A G +S
Sbjct: 532 GFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLIS 591

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y  ++    +  R+++ E LF+++L+  ++ + +  +++I+  C  G V     L 
Sbjct: 592 NIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLL 651

Query: 400 EDIEKIGFL---SSVDSDIHSVLLLGL 423
           E+++  G L   ++  S IH V  +GL
Sbjct: 652 ENMKSKGILPNCATYSSLIHGVCNIGL 678



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 4/130 (3%)

Query: 116 VVEAYKEEGCVVSVK-MMKVIFNLCEKARLAN-EAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++  ++EG V +V     +I   C+  ++   E+ W+  +M  F++ P+   Y  +I  
Sbjct: 685 LIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWL--EMISFNIHPNKFTYTVMIDG 742

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C+ G+M  A+ L+  M    + PD++TY  +  GFC A  +++A  +   M   G   +
Sbjct: 743 YCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVD 802

Query: 234 LVAYSALLDG 243
            + Y+ L+ G
Sbjct: 803 EITYTTLVHG 812


>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1385

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 154/335 (45%), Gaps = 27/335 (8%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRK 154
           + N  C+  R K    +I    +A   +G    V    V+ + LC K+R A +   +LR+
Sbjct: 220 LLNWYCKKGRYKAASELI----DAMASKGIAADVCTYNVLIDDLCRKSRSA-KGYLILRR 274

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M +  + P+ I YN +I    ++G +  A ++ + M L +L P+ +TY ++I G C+ G 
Sbjct: 275 MRKNMVYPNEITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGN 334

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +E+A  L  VM  HG   N V Y ALL+GI +         +L  M  +G       ++Y
Sbjct: 335 IEEALRLCDVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGH--ISY 392

Query: 275 TSVIQIFCGKGMMKEALGILDRMEAL-------------------GCAPNRVTISTLIKG 315
           T++I   C  G+++EA+ +LD M  +                   G  PNRV  STLI  
Sbjct: 393 TTMIDGLCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYN 452

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +C  GNL EA      +   G VS     S LV    R  RL+EAE     M   G+ P 
Sbjct: 453 YCKMGNLKEALNAYAVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAPS 512

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
            +    +I      G  L+ F +++ +  +G L S
Sbjct: 513 SVTFDCIIDTYGNSGDALKAFSVFDKMNSLGHLPS 547



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 151/326 (46%), Gaps = 11/326 (3%)

Query: 105 RIKQNPSIIIDVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR 161
           R+    +++ D VEA++     G   SV    ++     K R  +      ++M    + 
Sbjct: 117 RVCLRENMVGDAVEAFRLMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSFFKEMIANRVS 176

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+   +N ++   CE+G   +A  L++ M     +P  +TY +++  +C  GR + A  L
Sbjct: 177 PNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYKAASEL 236

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M   G AA++  Y+ L+D +CR     +   +L  M K      PN +TY ++I   
Sbjct: 237 IDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNM--VYPNEITYNTLINGL 294

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
             +G +  A  + + M      PN VT +TLI G C  GN++EA +L D +V+ G   + 
Sbjct: 295 VKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNE 354

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y +L+  + +  +      +  +M   GV+   ++ + MI  LC  G + E   L +D
Sbjct: 355 VTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNGLLEEAVQLLDD 414

Query: 402 IEKIGFLSSVDSDI--HSVLLLGLCR 425
           + K+    SV  DI   SVL+ G  +
Sbjct: 415 MLKV----SVSPDIVTFSVLVNGFLK 436



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 159/380 (41%), Gaps = 54/380 (14%)

Query: 99   RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
            RA E   +  NP++   +V+   +EG                    +  A+++   M   
Sbjct: 643  RAIEKGLLSPNPAMYTSLVDGLLKEGH-------------------SKAALYMFEDMLNE 683

Query: 159  DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
             ++PD I +N ++  +  KG M   ++++  M    L  ++ TY  ++ G+     +   
Sbjct: 684  GVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSKRHGMARC 743

Query: 219  CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG--DC--------- 267
              L+  M  HG A + + + +L+ G C+ GS++ A++ L ++  EG   DC         
Sbjct: 744  SKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVSK 803

Query: 268  ----------------------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
                                  +PNV TY S+   F       EA  IL  +   G AP 
Sbjct: 804  LCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGYAPT 863

Query: 306  RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
                +TLI+G C  GN+  A +L D++   G  S G   S+++  L R+++  EA ++  
Sbjct: 864  CKQFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAMSAIIRGLARSRKTDEATRILG 923

Query: 366  KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
             ML   + P     + ++   C  G V +   L   +E+      +D   ++VL+ GLC 
Sbjct: 924  IMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHV--KLDVAAYNVLISGLCA 981

Query: 426  KNHSVEAAKLARFMLKKRIW 445
                  A KL   M ++ IW
Sbjct: 982  DGDIQAAFKLYEEMEQRDIW 1001



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 127/281 (45%), Gaps = 5/281 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           NEA   + +         +  YN ++ L    G++  A  L+  M + +  PD  TY S+
Sbjct: 565 NEAKIFMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSL 624

Query: 206 IKGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           I G C  G++  A  L  + +++   + N   Y++L+DG+ + G  + AL +  +M  EG
Sbjct: 625 IAGLCRKGKMVPALLLSGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEG 684

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               P+ + +  ++  +  KG M +   IL  M +     N  T + L+ G+     +  
Sbjct: 685 --VQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSKRHGMAR 742

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
             +L ++++  G       + SL++   ++  L  A K   K+   G K D    +V++ 
Sbjct: 743 CSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVS 802

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +LC   ++   F L + +  +G   +VD+  ++ L  G  R
Sbjct: 803 KLCERNEIKMAFDLVKQLNMLGVTPNVDT--YNSLFNGFVR 841



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 8/226 (3%)

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE--GGDCSPNVVTY 274
           DA   F++M   G + ++   + +L  + +    +R ++L     KE      SPNV T+
Sbjct: 127 DAVEAFRLMGFRGFSPSVFTCNMVLGSLVK----DREVDLFWSFFKEMIANRVSPNVATF 182

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             ++   C +G  K A  +L +M+  G  P  VT +TL+  +C +G    A +LID + +
Sbjct: 183 NILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYKAASELIDAMAS 242

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G  +    Y+ L+ +L R  R  +   +  +M  + V P+ +  + +I  L   G++  
Sbjct: 243 KGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYNTLINGLVKEGKIGV 302

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
              ++E++     L   +S  ++ L+ G C   +  EA +L   M+
Sbjct: 303 ATKVFEEMSLCNLLP--NSVTYNTLIFGHCSNGNIEEALRLCDVMV 346



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 110/234 (47%), Gaps = 4/234 (1%)

Query: 166 IYNNVIRLFCEKGDMIA-ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           +++ +IR+ C + +M+  A E  + MG     P + T   ++        ++     FK 
Sbjct: 111 VFDLLIRV-CLRENMVGDAVEAFRLMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSFFKE 169

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M  +  + N+  ++ LL+ +C  G  + A  LL +M++ G    P  VTY +++  +C K
Sbjct: 170 MIANRVSPNVATFNILLNALCERGKFKSAGVLLRKMDETGH--FPTAVTYNTLLNWYCKK 227

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G  K A  ++D M + G A +  T + LI   C +    + Y ++ ++       +   Y
Sbjct: 228 GRYKAASELIDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITY 287

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
           ++L+  LV+  ++  A K+F +M    + P+ +  + +I   C  G + E   L
Sbjct: 288 NTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRL 341



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 83/196 (42%), Gaps = 2/196 (1%)

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C+ N   +  +I++   + M+ +A+     M   G +P+  T + ++     +  +D  +
Sbjct: 105 CNSNPAVFDLLIRVCLRENMVGDAVEAFRLMGFRGFSPSVFTCNMVLGSLVKDREVDLFW 164

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
               +++A     +   ++ L+  L    + K A  L  KM  +G  P  +  + ++   
Sbjct: 165 SFFKEMIANRVSPNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWY 224

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           C  G+      L + +   G   + D   ++VL+  LCRK+ S +   + R M K  ++ 
Sbjct: 225 CKKGRYKAASELIDAMASKGI--AADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYP 282

Query: 447 QGPYVDKIVEHLKKSG 462
                + ++  L K G
Sbjct: 283 NEITYNTLINGLVKEG 298


>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 199/415 (47%), Gaps = 12/415 (2%)

Query: 40  QKNPN-NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN 98
           ++NP+ ++E  L++  + + +  V +VL RC  + +    RFF+WA     +  S   Y+
Sbjct: 61  RRNPHHDLEVGLSSFSSNVSTDLVEQVLKRC-KNIAFSAHRFFLWAKRIPGFEPSDDSYH 119

Query: 99  RACEMSRIKQNPSIIID-VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157
              ++       +I+ D ++E  +    V++ ++   +F    +A L  +A+    +M E
Sbjct: 120 IVVDILGSSGQFAILWDFLIEIRETRSSVITHELFWHVFTAYSRADLPQDAIRAFNRMGE 179

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           F +R      + ++   C++  +  A +    +  +   P + TY  + +G+   G   +
Sbjct: 180 FGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSV-FNPSVKTYSILTRGWGVVGDSNN 238

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  +F  M+  GC  +++AY++LL+ +C+ G  + A ++  EM+  G D  P+  TY+  
Sbjct: 239 AQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVD--PDADTYSIF 296

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I+  C +  +     +L+R +     PN  T + +IK  C + N++EAYQ++D+++  G 
Sbjct: 297 IRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGV 356

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
                 Y+++         +  A  L  +M      PD    +++++ L   G+      
Sbjct: 357 TPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANE 416

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA-KLARFMLKKRIWLQGPYV 451
           ++E + K GF  SV +  ++V++ G C+K   +E A K    M+ + I    PY+
Sbjct: 417 VWESMGKRGFYPSVST--YAVMIHGFCKKKWKLEEACKYFEMMIDEGI---PPYI 466



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A+ ++++M      PD   YN V++L    G    A+E+ + MG    YP + TY  M
Sbjct: 377 NSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVM 436

Query: 206 IKGFCNA-GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           I GFC    +LE+AC  F++M   G    +     L D +  +G  ++ + +LG+  K  
Sbjct: 437 IHGFCKKKWKLEEACKYFEMMIDEGIPPYIATVELLRDRLLGIGFKDQ-VAILGDKMKRS 495

Query: 265 GDCS 268
             CS
Sbjct: 496 TSCS 499


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 172/342 (50%), Gaps = 8/342 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  ++KQ     + V+    +  C   V    V+ +   K     +AM +  +M     
Sbjct: 192 CDRGKLKQ----AMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGC 247

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD + YN +I+ FC+ G +  A   +K +      PD+I++  +++  C+ GR  DA  
Sbjct: 248 KPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMK 307

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M R GC  ++V ++ L++ +C+ G + +AL +L  M K G   +PN  ++  +IQ 
Sbjct: 308 LLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGH--TPNSRSFNPLIQG 365

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC    +  A+  L+ M + GC P+ VT + L+   C +G +D+A  ++ ++ + G   S
Sbjct: 366 FCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPS 425

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++++  L++  + + A +L  +M   G+KPD + C+ ++  L   G+V E    + 
Sbjct: 426 LISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFH 485

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +++  F    ++ I++ ++ GLC+   +  A      M+ K
Sbjct: 486 YLKR--FAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAK 525



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 137/278 (49%), Gaps = 7/278 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           E    L  M      PD I    +IR FC+ G    A ++M  +       D+ +Y  +I
Sbjct: 97  EGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLI 156

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C +G +E+A    +V+ R G + N   Y A+L  +C  G +++A+++LG   +    
Sbjct: 157 SGYCKSGEIEEA---LRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQS--K 211

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C P+VVT T +I   C +  + +A+ + + M   GC P+ VT + LIKGFC  G LDEA 
Sbjct: 212 CYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAI 271

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           + + K+ + G       ++ ++  L    R  +A KL + ML  G  P  +  +++I  L
Sbjct: 272 RFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFL 331

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           C  G + +   + E + K G   + +S   + L+ G C
Sbjct: 332 CQKGLLGKALNVLEMMPKHGH--TPNSRSFNPLIQGFC 367



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 147/302 (48%), Gaps = 20/302 (6%)

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +R     G++      ++ M      PD+I   ++I+ FC  GR ++A  +  +++  G 
Sbjct: 86  LRRLIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGA 145

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             ++ +Y+ L+ G C+ G +E AL +L  M       SPN  TY +V+   C +G +K+A
Sbjct: 146 VIDVTSYNVLISGYCKSGEIEEALRVLDRM-----GVSPNAATYDAVLCSLCDRGKLKQA 200

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           + +L R     C P+ VT + LI   C E  + +A +L +++   G       Y+ L+  
Sbjct: 201 MQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKG 260

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             +  RL EA +   K+ + G +PD ++ ++++R LC GG+ ++   L   + + G L S
Sbjct: 261 FCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPS 320

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK-------------RIWLQGPYVDKIVEH 457
           V +   ++L+  LC+K    +A  +   M K              + +  G  +D+ +E+
Sbjct: 321 VVT--FNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEY 378

Query: 458 LK 459
           L+
Sbjct: 379 LE 380



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 133/251 (52%), Gaps = 4/251 (1%)

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC+ SV    ++ N LC+K  L  +A+ VL  MP+    P++  +N +I+ FC    + 
Sbjct: 315 KGCLPSVVTFNILINFLCQKG-LLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGID 373

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A E ++ M     YPDI+TY  ++   C  G+++DA  +   +   GC+ +L++Y+ ++
Sbjct: 374 RAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVI 433

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG+ ++G  E A+ELL EM  +G    P+++T TSV+     +G ++EA+     ++   
Sbjct: 434 DGLLKVGKAELAVELLEEMCYKG--LKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFA 491

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN    +++I G C       A   +  +VA G   +   Y++L+  +      ++A 
Sbjct: 492 IRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDAS 551

Query: 362 KLFSKMLASGV 372
           KL +++ + G+
Sbjct: 552 KLSNELYSRGL 562



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 148/321 (46%), Gaps = 46/321 (14%)

Query: 121 KEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           + +GC   V    V+    C+  RL +EA+  L+K+P +  +PD I +N ++R  C  G 
Sbjct: 243 RNKGCKPDVVTYNVLIKGFCKGGRL-DEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGR 301

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
            + A +L+  M      P ++T+  +I   C  G L  A  + ++M +HG   N  +++ 
Sbjct: 302 WMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNP 361

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+ G C    ++RA+E L  M   G  C P++VTY  ++   C  G + +A+ IL ++ +
Sbjct: 362 LIQGFCNGKGIDRAIEYLEIMVSRG--CYPDIVTYNILLTALCKDGKVDDAVVILSQLSS 419

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV--------------VAGGSVSSGGC-- 343
            GC+P+ ++ +T+I G    G  + A +L++++              V GG    G    
Sbjct: 420 KGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVRE 479

Query: 344 -------------------YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
                              Y+S++  L ++++   A    + M+A G KP     + +I+
Sbjct: 480 AMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIK 539

Query: 385 ELCLGGQVLEGFCLYEDIEKI 405
                G   EG  L ED  K+
Sbjct: 540 -----GITYEG--LAEDASKL 553



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 93/189 (49%), Gaps = 4/189 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I+ +E     GC   +    ++   LC+  ++ ++A+ +L ++      P  I YN VI 
Sbjct: 376 IEYLEIMVSRGCYPDIVTYNILLTALCKDGKV-DDAVVILSQLSSKGCSPSLISYNTVID 434

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
              + G    A EL++ M    L PD+IT  S++ G    G++ +A   F  +KR     
Sbjct: 435 GLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRP 494

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y++++ G+C+      A++ L +M  +G  C P   TYT++I+    +G+ ++A  
Sbjct: 495 NAFIYNSIITGLCKSQQTSLAIDFLADMVAKG--CKPTEATYTTLIKGITYEGLAEDASK 552

Query: 293 ILDRMEALG 301
           + + + + G
Sbjct: 553 LSNELYSRG 561


>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 176/352 (50%), Gaps = 25/352 (7%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           + +L  KA LA EA+    +M ++  +PD I ++ VI    +K   I A        L D
Sbjct: 152 MIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDS--LKD 209

Query: 195 LY-PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD++ Y S++ G+C AG + +A  +F  MK  G   N+  YS ++D +CR G + RA
Sbjct: 210 RFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRA 269

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++  EM   G  C PN +T+ +++++    G  ++ L + ++M+ LGC P+ +T + LI
Sbjct: 270 HDVFSEMIDVG--CDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLI 327

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSG------GCYSSLVVELVRTKRLKEAEKLFSKM 367
           +  C + NL+EA ++++ V  G ++++       GC S L         +  A ++F+KM
Sbjct: 328 ESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKL-------GDVNSAHRMFAKM 380

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
                +P+ +  ++++R             L +++++       +++ + VL+   C   
Sbjct: 381 KDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEI--EPNANTYRVLISTFCGIG 438

Query: 428 HSVEAAKLARFMLKKRIWLQG-PYVDKIVEHLKKSGD----EELITNLPKIG 474
           H   A    + M++++      P  + +++ L+K+G     EEL+  +   G
Sbjct: 439 HWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRG 490



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 167/437 (38%), Gaps = 106/437 (24%)

Query: 33  ERFYT----HLQKNPN------NIEKTLATVK---------AKLDSTCVIEVLHRC---- 69
           E+F++    H +KN N      N   T+A++            + S  V  V+ +C    
Sbjct: 62  EKFHSLIKSHQRKNTNPDPISPNPHYTIASLSFDFSQISSADSVSSAIVRRVIEKCGGVR 121

Query: 70  ----FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAY---KE 122
               FP      + FF WA     + HS   Y    EM  +     +  + V A+   ++
Sbjct: 122 HGIPFPQT----LAFFNWATNLEEFGHSPEPY---MEMIDLAGKAGLAAEAVHAFNRMED 174

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
            GC        V+ +   K R A EA      + +    PD ++Y +++  +C  G++  
Sbjct: 175 YGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKD-RFEPDVVVYTSLVHGWCRAGNISE 233

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFC-------------------------------- 210
           A+ +   M +  + P++ TY  +I   C                                
Sbjct: 234 AERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMR 293

Query: 211 ---NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK----- 262
               AGR E    ++  MKR GC  + + Y+ L++  CR  ++E A+++L  ++K     
Sbjct: 294 VHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLN 353

Query: 263 ------------EGGD---------------CSPNVVTYTSVIQIFCGKGMMKEALGILD 295
                       + GD               C PN VTY  ++++F  K      L +  
Sbjct: 354 ASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRK 413

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-SSGGCYSSLVVELVRT 354
            M+     PN  T   LI  FC  G+ + AY    +++    +  S   Y  ++ +L + 
Sbjct: 414 EMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKA 473

Query: 355 KRLKEAEKLFSKMLASG 371
            +LK+ E+L  KM+  G
Sbjct: 474 GQLKKHEELVEKMVNRG 490



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 3/203 (1%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y+ MI     AG   +A   F  M+ +GC  + +A+S +   I  L    RA+E     +
Sbjct: 149 YMEMIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVV---ISSLSKKRRAIEAQSFFD 205

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
                  P+VV YTS++  +C  G + EA  +   M+  G  PN  T S +I   C  G 
Sbjct: 206 SLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQ 265

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +  A+ +  +++  G   +   +++L+   V+  R ++  +++++M   G  PD +  + 
Sbjct: 266 ITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNF 325

Query: 382 MIRELCLGGQVLEGFCLYEDIEK 404
           +I   C    + E   +   ++K
Sbjct: 326 LIESHCRDDNLEEAVKILNSVKK 348


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 220/468 (47%), Gaps = 19/468 (4%)

Query: 8   RILSSSVNIKNSKIFALHFTTASPAERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEV 65
           R+LSS V   ++ +      TA PA+R +  +   +  + +E  L     ++       V
Sbjct: 17  RMLSSGVGGGDALV-----DTADPAKRLFKLIISCRKASAVEHELDHSGVRVTPDVAERV 71

Query: 66  LHRCFPSQSQMGIRFFIWAALQS--SYRHSSFMYNRA-CEMSRIKQNPSIIIDVVEAYKE 122
           L R   +   +  RFF WA  Q      H+   Y+     +++I+Q   ++ DVV   + 
Sbjct: 72  LER-LDNAGMLAYRFFEWARRQKRGGCAHTVRSYHTVVASLAKIRQY-QLMWDVVAVMRR 129

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           EG V +V+   +I     +A+  +EA++    M ++ + P+   +N+++   C+  ++  
Sbjct: 130 EGAV-NVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLGALCKSKNVRK 188

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E+   M      PD  TY  +++G+  A  L     ++  M   GC  ++V Y  ++D
Sbjct: 189 AQEIFDKMN-SRFSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEPDIVTYGIMVD 247

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            +C+ G +E A+ ++ +M   G  C P    Y+ ++  +  +  +++A+     ME  G 
Sbjct: 248 SLCKTGRVEEAVRVVQDMTSRG--CQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGI 305

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+ V  + L+  FC     + A+++++ +   G  ++   ++ ++  L+   R  EA K
Sbjct: 306 VPDIVVYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYK 365

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           +F +M+    +PD    ++MI+  C   +V     +++ +    FL S+ +   SVL+ G
Sbjct: 366 VFRRMIKC-CQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHT--FSVLING 422

Query: 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           LC K    +A  L   M++K I   G    K+ + L K G ++++  L
Sbjct: 423 LCDKREVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFL 470



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 133/277 (48%), Gaps = 22/277 (7%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGC---VVSVKMMKVIFNLCEKARLANEAMWVLR 153
           + RA  + ++++  S ++D        GC   +V+  +M  + +LC+  R+  EA+ V++
Sbjct: 214 WGRAPNLPKMREVYSEMLDA-------GCEPDIVTYGIM--VDSLCKTGRV-EEAVRVVQ 263

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEK---GDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
            M     +P T IY+ ++  +  +    D +A    M+  G++   PDI+ Y +++  FC
Sbjct: 264 DMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIV---PDIVVYNALVSAFC 320

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
            A + E+A  +   M+ HG   N   ++ +L+ +  LG  + A ++   M K    C P+
Sbjct: 321 KAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIK---CCQPD 377

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
             TYT +I++FC    ++ AL +   M      P+  T S LI G C +  + +A  L++
Sbjct: 378 CDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACVLLE 437

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            ++  G    G  +  L   L++  R    + L  KM
Sbjct: 438 DMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKM 474


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 146/316 (46%), Gaps = 19/316 (6%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G +  +K    +F+L +K  LA              L P+    N +I   C    +   
Sbjct: 99  GALAKIKHYSQVFSLYKKMHLAG-------------LSPNFFTLNILINCLCNVNRVREG 145

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
              M G+      PD++TY S+IKG C   R+ +A  LF  M++ GC  N+V Y  L+ G
Sbjct: 146 LSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKG 205

Query: 244 ICRLGSMERALELLGEM----EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           +CR G++  AL+L  EM         +C PN+ +Y  +I   C  G  KEA  + + M  
Sbjct: 206 LCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVD 265

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  P+ VT S LI   C EG + EA + ++ ++  G V     ++SL+        L  
Sbjct: 266 QGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDS 325

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A++LF  M + G +PD ++ +V+I   C    V E   LY ++ ++G     D     VL
Sbjct: 326 AKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVG--KWPDMKTFCVL 383

Query: 420 LLGLCRKNHSVEAAKL 435
           L GL       +A KL
Sbjct: 384 LKGLFLAGKVGDAKKL 399



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 170/332 (51%), Gaps = 7/332 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +   EA  +  +M +  +RPD + ++ +I   C++G +I A + ++ M L 
Sbjct: 243 IIDELCKIGKW-KEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLR 301

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ T+ S+I+GFC  G L+ A  LF  M   G   ++++Y+ L+ G C+  ++E A
Sbjct: 302 GIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEA 361

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           ++L  EM + G    P++ T+  +++     G + +A  +   ++      N    S  +
Sbjct: 362 MKLYNEMLRVGK--WPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFL 419

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G L EA +L +++ +         ++ L+  L + ++L+ A +LF K+   G++
Sbjct: 420 DGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQ 479

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +   +MI   C  GQV     L++ +E+ G   ++ +  +S LL G  + N   E  
Sbjct: 480 PDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLT--YSALLHGFYKNNKLEEVV 537

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           KL   M++K + L    +  IVE +  S DE+
Sbjct: 538 KLLHKMIQKDVSLAAS-IYTIVEDM-VSKDEK 567



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 148/311 (47%), Gaps = 46/311 (14%)

Query: 175 CEKGDMIAADELMKGMGLIDLY-PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           C+KG++ +   L       DL    II++  ++              L+K M   G + N
Sbjct: 70  CKKGNITSTQALQ----FFDLMMRSIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPN 125

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
               + L++ +C +  +   L  +  + + G    P+VVTYTS+I+  C +  + EA  +
Sbjct: 126 FFTLNILINCLCNVNRVREGLSAMAGIMRRG--YIPDVVTYTSLIKGLCMEHRISEATRL 183

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC------YSSL 347
             RM+ LGC PN VT  TLIKG C  GN++ A +L  +++ G S  +  C      Y+ +
Sbjct: 184 FIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNII 243

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV--------------- 392
           + EL +  + KEA++LF++M+  GV+PD +  S +I  LC  G V               
Sbjct: 244 IDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGI 303

Query: 393 ----------LEGFCLYEDIE--KIGFLS----SVDSDI--HSVLLLGLCRKNHSVEAAK 434
                     +EGFCL  D++  K  FLS      + D+  ++VL+ G C+  +  EA K
Sbjct: 304 VPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMK 363

Query: 435 LARFMLKKRIW 445
           L   ML+   W
Sbjct: 364 LYNEMLRVGKW 374



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 136/326 (41%), Gaps = 48/326 (14%)

Query: 95  FMYN----RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150
           F YN      C++ + K+   +  ++V+    +G    V     + +   K  +  EA  
Sbjct: 238 FSYNIIIDELCKIGKWKEAKRLFNEMVD----QGVRPDVVTFSALIDTLCKEGMVIEAKK 293

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
            L  M    + PD   + ++I  FC  GD+ +A EL   M      PD+I+Y  +I G+C
Sbjct: 294 FLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYC 353

Query: 211 N-----------------------------------AGRLEDACGLFKVMKRHGCAANLV 235
                                               AG++ DA  LF V+K H    NL 
Sbjct: 354 KTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLY 413

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
             S  LDG+C+ G +  A+EL  E++    +   ++ ++  +I   C    ++ A  + +
Sbjct: 414 ICSVFLDGLCKNGCLFEAMELFNELKSY--NMKLDIESFNCLIDGLCKARKLETAWELFE 471

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           ++   G  P+ VT   +I GFC  G +D A  L   +   G   +   YS+L+    +  
Sbjct: 472 KLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNN 531

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSV 381
           +L+E  KL  KM+   V    LA S+
Sbjct: 532 KLEEVVKLLHKMIQKDV---SLAASI 554



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 82/151 (54%), Gaps = 2/151 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EAM +  ++  ++++ D   +N +I   C+   +  A EL + +    L PD++TY  MI
Sbjct: 430 EAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMI 489

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC  G++++A  LF++M+ +GC  NL+ YSALL G  +   +E  ++LL +M ++  D
Sbjct: 490 NGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQK--D 547

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
            S     YT V  +       +E L IL R 
Sbjct: 548 VSLAASIYTIVEDMVSKDEKCREWLDILQRF 578



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 9/156 (5%)

Query: 317 CVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           C +GN+   +A Q  D ++   S+ S   ++ L+  L + K   +   L+ KM  +G+ P
Sbjct: 70  CKKGNITSTQALQFFDLMMR--SIIS---FNLLLGALAKIKHYSQVFSLYKKMHLAGLSP 124

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           +    +++I  LC   +V EG      I + G++  V +  ++ L+ GLC ++   EA +
Sbjct: 125 NFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVT--YTSLIKGLCMEHRISEATR 182

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           L   M K   W        +++ L ++G+  L   L
Sbjct: 183 LFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKL 218


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 184/364 (50%), Gaps = 10/364 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+M  I+++      + E    +G  +S+    V+ + LC+  R+ +EA+ +L +M    
Sbjct: 386 CQMGNIEES----FKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRI-DEAVILLHEMEVIG 440

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L+PD + Y+ +I   C++G +  A EL + M    +YP+     ++I G    G + +A 
Sbjct: 441 LKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQ 500

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
             F  + +   A  ++ Y+ ++DG  +LG++  A+    ++ ++G   SP +VT+ S+I 
Sbjct: 501 MYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKG--ISPTIVTFNSLIY 558

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            FC KG + EA+ +LD ++  G  P  VT +TL+ G+C EG++   + ++ ++ A     
Sbjct: 559 GFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKP 618

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+ +V  L +  RL E+ +L   M A G+ PD +  + +I+  C    + + F L+
Sbjct: 619 TQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLH 678

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459
             + +     S  +  ++VL+ GLC   +  +A +L   +  + I L       I++   
Sbjct: 679 NQMLQHSLQPSPVT--YNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHC 736

Query: 460 KSGD 463
             GD
Sbjct: 737 AKGD 740



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 162/330 (49%), Gaps = 5/330 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  L EK  ++ EA      + + D+  + I+YN +I  + + G++  A    K +   
Sbjct: 486 IISGLFEKGAIS-EAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEK 544

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P I+T+ S+I GFC  G+L +A  L   +K HG     V Y+ L++G C  G M   
Sbjct: 545 GISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSM 604

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++L EME +     P  +TYT V++  C +G + E++ +L  M A G  P+++T +T+I
Sbjct: 605 FDMLHEMEAKA--IKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVI 662

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           + FC   +L +A+QL ++++      S   Y+ L+  L     LK+A++L   +    ++
Sbjct: 663 QSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIR 722

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
              +A + +I+  C  G V      +  + + GF  S+    +S ++  LC++N   +A 
Sbjct: 723 LTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRD--YSAVINRLCKRNLITDAK 780

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
                ML   I         ++    +SGD
Sbjct: 781 FFFCMMLTHGIPPDQDICLVMLNAFHRSGD 810



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 146/294 (49%), Gaps = 34/294 (11%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNV------------------------------ 170
           +A + ++A++VL KM   +L+     YN++                              
Sbjct: 180 RAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNP 239

Query: 171 --IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
             I   C +  +  A   ++  G  +  P ++++ +++ GFC  G ++ A   F +M ++
Sbjct: 240 ILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKY 299

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   ++ +Y+ LL G+C  GSME ALE   +ME  G    P++VTY  +   F   G++ 
Sbjct: 300 GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHG--VEPDIVTYNILANGFRILGLIS 357

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            A  ++ RM   G  P+ VT + LI G C  GN++E+++L +K+++ G   S   Y+ L+
Sbjct: 358 GAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLL 417

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
             L ++ R+ EA  L  +M   G+KPD L  SV+I  LC  G V E   LYE++
Sbjct: 418 SSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEM 471



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 145/298 (48%), Gaps = 7/298 (2%)

Query: 115 DVVEAYK---EEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           + V +YK   E+G   + V    +I+  C+K +LA EA+ +L  +    L P ++ Y  +
Sbjct: 533 EAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLA-EAVKLLDTIKVHGLVPTSVTYTTL 591

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +  +CE+GDM +  +++  M    + P  ITY  ++KG C  GRL ++  L K M   G 
Sbjct: 592 MNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGL 651

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             + + Y+ ++   C+   +++A +L  +M +     SP  VTY  +I   C  G +K+A
Sbjct: 652 FPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSP--VTYNVLINGLCVYGNLKDA 709

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             +L  ++       +V  +T+IK  C +G++  A     ++V  G   S   YS+++  
Sbjct: 710 DRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINR 769

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
           L +   + +A+  F  ML  G+ PD   C VM+      G     F ++  + K G L
Sbjct: 770 LCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLL 827


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 160/319 (50%), Gaps = 8/319 (2%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           + P+  I+N V+  + +K  +  A  +   M    L PD++TY  +I   C  GR++DA 
Sbjct: 440 ISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAV 499

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
             F  M   G   N V +++L+ G+C +   E+A EL  EM  +G    PNVV + +++ 
Sbjct: 500 LKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQG--VRPNVVFFNTIMC 557

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C +G +  A  ++D ME +G  PN ++ +TLI G C+ G  DEA QL+D +V+ G   
Sbjct: 558 NLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKP 617

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y +L+    +T R+  A  LF +ML  GV P  +  S +++ L    +  E   LY
Sbjct: 618 DLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELY 677

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM----LKKRIWLQGPYVDKIV 455
            ++ K G     D   ++++L GLC+ N   EA K+ + +    L+  I      +D + 
Sbjct: 678 LNMIKSG--QQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLF 735

Query: 456 EHLKKSGDEELITNLPKIG 474
           +  +K    +L  ++P  G
Sbjct: 736 KGGRKKDAMDLFASIPSHG 754



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 144/274 (52%), Gaps = 10/274 (3%)

Query: 135 IFN--LCEKARLA--NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           IFN  LC  A+ A  +EAM +  +M +  L PD + Y  +I   C+ G +   D ++K  
Sbjct: 446 IFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRV--DDAVLKFN 503

Query: 191 GLID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +I+  + P+ + + S++ G C   R E A  LF  M   G   N+V ++ ++  +C  G
Sbjct: 504 QMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEG 563

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  A  L+  ME+ G    PNV++Y ++I   C  G   EA  +LD M ++G  P+ ++
Sbjct: 564 QVMVAQRLIDSMERVG--VRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLIS 621

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
             TL++G+C  G +D AY L  +++  G       YS+++  L  T+R  EA++L+  M+
Sbjct: 622 YDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMI 681

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            SG + D    ++++  LC    V E F +++ +
Sbjct: 682 KSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSL 715



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 157/322 (48%), Gaps = 7/322 (2%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V  V + +++  LC+  R+      +LR+MPEF   P+ +  N +++  C +  +  A E
Sbjct: 123 VNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALE 182

Query: 186 LMKGM---GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           L+  M   G  +  P+++TY ++I G C A  ++ A G+ + M   G   ++V YS ++D
Sbjct: 183 LLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIID 242

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C+  +++RA  +L  M  +G    P+VVTY ++I   C    +  A G+L  M   G 
Sbjct: 243 GLCKAQAVDRAEGVLQHMIDKG--VKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGV 300

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+ VT +T+I G C    +D A  ++  ++          Y+ L+   + T   KE  +
Sbjct: 301 KPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVR 360

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
              +M A G+ PD +  S+++  LC  G+  E   ++  + + G   +V   I+ +LL G
Sbjct: 361 RLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNV--TIYGILLHG 418

Query: 423 LCRKNHSVEAAKLARFMLKKRI 444
              +    +   L   M+   I
Sbjct: 419 YAARGAIADLTDLLDLMVANGI 440



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 164/350 (46%), Gaps = 9/350 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC KA+  + A  VL+ M +  ++PD + YN +I   C+   +  A+ +++
Sbjct: 235 VTYSTIIDGLC-KAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQ 293

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD++TY ++I G C A  ++ A G+ + M       ++  Y+ L+ G    G
Sbjct: 294 HMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTG 353

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
             +  +  L EM   G D  P+VVTY+ ++   C  G   EA  I   M   G  PN   
Sbjct: 354 EWKEVVRRLEEMYARGLD--PDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTI 411

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
              L+ G+   G + +   L+D +VA G   +   ++ ++    +   + EA  +FS+M 
Sbjct: 412 YGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMS 471

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G+ PD +   ++I  LC  G+V +    +  +   G   + +S + + L+ GLC  + 
Sbjct: 472 QHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGV--TPNSVVFNSLVYGLCTVDR 529

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD----EELITNLPKIG 474
             +A +L   M  + +     + + I+ +L   G     + LI ++ ++G
Sbjct: 530 WEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVG 579



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 164/361 (45%), Gaps = 47/361 (13%)

Query: 128 SVKMMKVIFNLCEKARLANE---AMWVLRKMPEF---DLRPDTIIYNNVIRLFCEKGDMI 181
           SV+    + N+  +AR ++    A+ +  +M       +RPD   Y+ +   FC  G + 
Sbjct: 48  SVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRI- 106

Query: 182 AADELMKGMGLI---DLYPDIITYVSMIKGFCNAGRLEDACG-LFKVMKRHGCAANLVAY 237
             +      GLI       + +    ++ G C+A R+++A   L + M   GC  N+V+ 
Sbjct: 107 --EHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSC 164

Query: 238 SALLDGICRLGSMERALELLGEM-EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           + LL G+C    +E ALELL  M E  GG+C+PNVVTY ++I   C    +  A G+L  
Sbjct: 165 NTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQH 224

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M   G   + VT ST+I G C    +D A  ++  ++  G       Y++++  L + + 
Sbjct: 225 MIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQA 284

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE---------DIEKI-- 405
           +  AE +   M+  GVKPD +  + +I  LC    V     + +         DI+    
Sbjct: 285 VDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNC 344

Query: 406 ---GFLSS-----------------VDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKR 443
              G+LS+                 +D D+  +S+LL  LC+     EA K+   M++K 
Sbjct: 345 LIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKG 404

Query: 444 I 444
           I
Sbjct: 405 I 405



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 141/299 (47%), Gaps = 8/299 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++ NLC + ++   A  ++  M    +RP+ I YN +I   C  G    A +L+  M  +
Sbjct: 555 IMCNLCNEGQVM-VAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSV 613

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+I+Y ++++G+C  GR+++A  LF+ M R G     V YS +L G+        A
Sbjct: 614 GLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEA 673

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL   M K G     ++ TY  ++   C    + EA  I   + +    PN +T + +I
Sbjct: 674 KELYLNMIKSGQQW--DIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMI 731

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
                 G   +A  L   + + G V +   Y  ++  +++   L E + LF  M  SG  
Sbjct: 732 DVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCT 791

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR---KNHS 429
           PD +  + +IR L   G+++        I+++ F  S+++   S+L+    R   KNH+
Sbjct: 792 PDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNF--SLEASTTSLLISLFSREEYKNHA 848



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 136/274 (49%), Gaps = 3/274 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+  R+ ++A+    +M    + P+++++N+++   C       A+EL   M    + P
Sbjct: 489 LCKLGRV-DDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRP 547

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +++ + +++   CN G++  A  L   M+R G   N+++Y+ L+ G C  G  + A +LL
Sbjct: 548 NVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLL 607

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M   G    P++++Y ++++ +C  G +  A  +   M   G  P  VT ST+++G  
Sbjct: 608 DVMVSVG--LKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLF 665

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
                 EA +L   ++  G       Y+ ++  L +T  + EA K+F  + +  ++P+ +
Sbjct: 666 HTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNII 725

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
             ++MI  L  GG+  +   L+  I   G + +V
Sbjct: 726 TFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNV 759



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 6/231 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  RI     +  +++      G V    +++ +F+     R  +EA  +   M +   
Sbjct: 630 CKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFH----TRRFSEAKELYLNMIKSGQ 685

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           + D   YN ++   C+   +  A ++ + +   DL P+IIT+  MI      GR +DA  
Sbjct: 686 QWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMD 745

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  +  HG   N+V Y  ++  I + G ++    L   MEK G  C+P+ V   ++I+ 
Sbjct: 746 LFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSG--CTPDSVMLNAIIRS 803

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
             G+G +  A   L +++ +  +    T S LI  F  E   + A  L +K
Sbjct: 804 LLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLISLFSREEYKNHAKSLPEK 854


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 205/416 (49%), Gaps = 11/416 (2%)

Query: 59  STCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQNPSIIIDVV 117
           S  ++E + + F +   +  RFF WA  Q  Y HS   ++   + +++I+Q   ++ DVV
Sbjct: 21  SEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFHTVIDSLAKIRQY-QLMWDVV 79

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           +  K +  +V+V+   +I     +A+   EA++    M ++D+ P+   +N ++   C+ 
Sbjct: 80  KVMKSKR-MVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKS 138

Query: 178 GDMIAADELMKGMGLIDLY-PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
            ++  A E+   +   D + PD  TY  +++G+     L  A  +F+ M  +GC  ++V 
Sbjct: 139 KNVRKAQEIFDSIK--DRFVPDSKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVT 196

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y  ++D +C+ G ++ AL ++ EM  +   C P    Y+ ++  +  +  +++A+     
Sbjct: 197 YGIMVDVLCKAGRVDEALGIVNEM--DSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLE 254

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           ME  G  P+    + LI  FC    L   Y++++++   G   +   ++ ++  L+    
Sbjct: 255 MENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGE 314

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
             EA ++F +M+    +PD    ++MI+  C   ++ +   +++ ++   F+ S+ +   
Sbjct: 315 TDEAYRVFLRMIKV-CEPDADTYTMMIKMFCERDELKKALKVWKYMKLKRFMPSMHT--F 371

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
            VL+ GLC K    +A  L   M++K I   G    ++ + L K G E+++  L K
Sbjct: 372 QVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGREDVLKFLQK 427


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 165/328 (50%), Gaps = 10/328 (3%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           ++ S++++ + A     C   +     +FN   K ++ +E    +  M +    P+ + Y
Sbjct: 108 RSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKC-CSPNVVTY 166

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           +  I  FC+ G++  A +    M    L P+++T+  +I G+C AG LE A  L+K M+R
Sbjct: 167 STWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRR 226

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
              + N+V Y+AL+DG C+ G M+RA E+   M ++     PN + YT++I  F  +G  
Sbjct: 227 VRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVED--RVEPNSLVYTTIIDGFFQRGDS 284

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
             A+  L +M   G   +      +I G C  G L EA ++++ +     V     ++++
Sbjct: 285 DNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTM 344

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +    ++ R+K A  ++ K++  G +PD +A S MI  +   GQ+ E   +Y  IEK   
Sbjct: 345 MNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAI-VYFCIEK--- 400

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
               +  +++VL+  LC++   +E  +L
Sbjct: 401 ---ANDVMYTVLIDALCKEGDFIEVERL 425



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 152/320 (47%), Gaps = 28/320 (8%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           MY+R  E  R++ N  +   +++ + + G                    ++ AM  L KM
Sbjct: 255 MYSRMVE-DRVEPNSLVYTTIIDGFFQRGD-------------------SDNAMKFLAKM 294

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               +R D   Y  +I   C  G +  A E+++ M   DL PD++ + +M+  +  +GR+
Sbjct: 295 LNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRM 354

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           + A  ++  +   G   ++VA S ++DGI + G +  A+     +EK       N V YT
Sbjct: 355 KAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFC-IEK------ANDVMYT 407

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I   C +G   E   +  ++   G  P++   ++ I G C +GNL +A++L  ++V  
Sbjct: 408 VLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQE 467

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G +     Y++L+  L     + EA ++F +ML SG+ PD     ++IR     G +   
Sbjct: 468 GLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAA 527

Query: 396 FCLYEDIEKIGFLSSV-DSD 414
             L  D+++ G +++V D+D
Sbjct: 528 SDLLLDMQRRGLVTAVSDAD 547



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 142/339 (41%), Gaps = 43/339 (12%)

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           +  EA+  L ++ +    PD    N  I         I + + +  +      P   ++ 
Sbjct: 1   MVREALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFN 60

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S++   C  G+++ A  +   M R GC  ++++Y++L+DG CR G +  A  +L  +   
Sbjct: 61  SVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRAS 120

Query: 264 GGD-----------------------------------CSPNVVTYTSVIQIFCGKGMMK 288
            G                                    CSPNVVTY++ I  FC  G ++
Sbjct: 121 HGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQ 180

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA---YQLIDKVVAGGSVSSGGCYS 345
            AL     M+    +PN VT + LI G+C  G+L+ A   Y+ + +V    +V +   Y+
Sbjct: 181 LALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVT---YT 237

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           +L+    +   ++ AE+++S+M+   V+P+ L  + +I      G           +   
Sbjct: 238 ALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQ 297

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           G    +D   + V++ GLC      EA ++   M K  +
Sbjct: 298 GM--RLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDL 334



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/235 (19%), Positives = 95/235 (40%), Gaps = 39/235 (16%)

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA-- 325
           +P+  ++ SV+   C  G +K A  I+  M   GC P+ ++ ++LI G C  G++  A  
Sbjct: 53  TPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASL 112

Query: 326 -----------------------------YQLIDKVVAGGSVSSGGC------YSSLVVE 350
                                         +++D+V     V    C      YS+ +  
Sbjct: 113 VLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDT 172

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             ++  L+ A K F  M    + P+ +  + +I   C  G +     LY+++ ++    S
Sbjct: 173 FCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRM--S 230

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           ++   ++ L+ G C+K     A ++   M++ R+         I++   + GD +
Sbjct: 231 LNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSD 285


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 161/324 (49%), Gaps = 17/324 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC+ A+   ++  + ++M    + PD   Y  +I  FC+ G +  A      M  
Sbjct: 457 KVITFLCQ-AKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRS 515

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   P+++TY +++  +  + +L  A  +F  M    C  N V YSAL+DG+C+ G +++
Sbjct: 516 VGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQK 575

Query: 253 ALELL-------GEMEK----EGGDC---SPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A E+        G +E     EG D    +PNVVTY ++I   C    + +A  +LD M 
Sbjct: 576 ACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAML 635

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           A GC PN++    LI GFC  G +D A ++  ++   G + S   Y+SL+  + +  RL 
Sbjct: 636 AAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLD 695

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418
            A K+ S+ML     P+ +  + MI  L   G++ +   L   +E+ G   +V +  ++ 
Sbjct: 696 LAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVT--YTA 753

Query: 419 LLLGLCRKNHSVEAAKLARFMLKK 442
           L+ GL +   +  + KL + M  K
Sbjct: 754 LIDGLGKTGKADASLKLFKQMNSK 777



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 157/341 (46%), Gaps = 47/341 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--- 190
           +I  LC KA+  ++A  +L  M      P+ I+Y+ +I  FC+ G +  A E+   M   
Sbjct: 614 LIDGLC-KAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKC 672

Query: 191 -------------------GLIDLY-------------PDIITYVSMIKGFCNAGRLEDA 218
                              G +DL              P+++TY +MI G    G +E A
Sbjct: 673 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKA 732

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L  +M+  GC+ N+V Y+AL+DG+ + G  + +L+L  +M  +G  C+PN VTY  +I
Sbjct: 733 LNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKG--CAPNYVTYRVLI 790

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C  G++ EA  +LD M+      +       ++GF        +  L++++ +  +V
Sbjct: 791 NHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGF--SKKFIASLGLLEEMESHETV 848

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKML----ASGVKPDGLACSVMIRELCLGGQVLE 394
                Y  L+    +  RL+ A +L  +++    +  +   G+  S +I+ LCL  QV E
Sbjct: 849 PIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYAS-LIQALCLASQVEE 907

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            F LY ++ + G +   D  +   L+ GL   N   EA +L
Sbjct: 908 AFTLYTEMTRKGIVP--DLIVFVSLVKGLIEVNKWDEALQL 946



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 158/357 (44%), Gaps = 13/357 (3%)

Query: 75  QMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV 134
           ++ +RFF+WA  Q  Y H+   Y+   E+   +        ++    E+   V  +++ V
Sbjct: 115 ELCVRFFLWAERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGEDDREVLRRLLNV 174

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           +   C +  L +EA+  L ++ +F  RP  + YN ++++    G +     + K M    
Sbjct: 175 LVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASG 234

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
              D  T     +  C  GR  DA     ++++     + V  + ++ G+        A+
Sbjct: 235 FCMDRSTIGYFAQALCKVGRWADA---LNMLEKEDFNLDTVLCTQMISGLMEASLFNEAM 291

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
             L  M      C PNVVTY +++  F  K        I++ M   GC PN    ++L+ 
Sbjct: 292 SFLHRM--RCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVH 349

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV------VELVRTKRLKEAEKLFSKML 368
           G+C  G+   AY+L +++   GS      Y+  +       EL   + L   EK++ +ML
Sbjct: 350 GYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEML 409

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           A+    + +  +   R LC  G+  + F + +++ + GF+   D+  ++ ++  LC+
Sbjct: 410 AASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVP--DTSTYTKVITFLCQ 464



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 132/314 (42%), Gaps = 53/314 (16%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA L  +A     +M      P+ + Y  ++  + +   +I A ++   M     YP+ +
Sbjct: 499 KAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAV 558

Query: 201 TYVSMIKGFCNAGRLEDACGLF-------------------------------------- 222
           TY ++I G C AG ++ AC ++                                      
Sbjct: 559 TYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGL 618

Query: 223 ----KVMKRH---------GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
               KV   H         GC  N + Y AL+DG C++G ++ A E+   M K G    P
Sbjct: 619 CKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCG--YLP 676

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +V TYTS+I      G +  A+ +L  M    C PN VT + +I G    G +++A  L+
Sbjct: 677 SVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLL 736

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
             +   G   +   Y++L+  L +T +   + KLF +M + G  P+ +   V+I   C  
Sbjct: 737 SLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAA 796

Query: 390 GQVLEGFCLYEDIE 403
           G + E   L ++++
Sbjct: 797 GLLDEAHLLLDEMK 810



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 159/377 (42%), Gaps = 62/377 (16%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           KE+  + +V   ++I  L E A L NEAM  L +M      P+ + Y  ++  F +K   
Sbjct: 264 KEDFNLDTVLCTQMISGLME-ASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQF 322

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
                ++  M      P+   + S++ G+CNAG    A  LF  M   G     VAY+  
Sbjct: 323 GWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIF 382

Query: 241 LDGICR-----------------------------------------LGSMERALELLGE 259
           +  IC                                          +G  E+A ++L E
Sbjct: 383 IGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKE 442

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M ++G    P+  TYT VI   C    ++++  +   M+  G  P+  T + LI  FC  
Sbjct: 443 MMRKG--FVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKA 500

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G +++A    D++ + G   +   Y++L+   +++K+L +A  +F +M+ +   P+ +  
Sbjct: 501 GLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTY 560

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI----------------HSVLLLGL 423
           S +I  LC  G++ +   +YE +  IG   +V+SD                 +  L+ GL
Sbjct: 561 SALIDGLCKAGEIQKACEVYEKL--IGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGL 618

Query: 424 CRKNHSVEAAKLARFML 440
           C+     +A +L   ML
Sbjct: 619 CKAQKVSDAHELLDAML 635


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 159/307 (51%), Gaps = 5/307 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LCEK +++   M+    +   +L  D I+YN +I  + ++G+   A +L K +G  
Sbjct: 497 ILMGLCEKGKISQARMY-FDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEK 555

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P I+T+ S++ GFC   +L  A  L   +K HG   N V Y+ L++  C  G+M+  
Sbjct: 556 GISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSL 615

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           LELL EM+ +     P  +TYT VI+  C +  ++E+  +L+ M+A+G  P++V+ +T+I
Sbjct: 616 LELLSEMKAKA--IGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTII 673

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           + FC   ++ +A+QL DK++      +   Y+ L+        LK+A+ L   +    V 
Sbjct: 674 QAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVN 733

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            +  A + +I+  C  G V +    +  + + GF  S+    +S ++  LC++    EA 
Sbjct: 734 LNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRD--YSAVIGRLCKRCLVTEAK 791

Query: 434 KLARFML 440
                ML
Sbjct: 792 YFFCMML 798



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 140/270 (51%), Gaps = 13/270 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++  +  +A+ +  KM    + P+++I+  ++   CEKG +  A      +   
Sbjct: 462 LIHGLCKQGEV-QQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITS 520

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +L  DII Y  MI G+   G   +A  L+K +   G +  +V +++L+ G C    + +A
Sbjct: 521 NLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQA 580

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL  ++  G    PN VTYT+++ ++C +G M+  L +L  M+A    P  +T + +I
Sbjct: 581 RRLLDTIKLHG--LEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVI 638

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           KG C +  L E+ QL++ + A G       Y++++    + + +++A +L+ KML   ++
Sbjct: 639 KGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLE 698

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           P  +  +++I           GFC+Y D++
Sbjct: 699 PTSVTYNILI----------NGFCVYGDLK 718



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 150/282 (53%), Gaps = 5/282 (1%)

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +  P ++++ +++  +C  G ++ A   F +M +HG   +  +Y+ L+ G+C  GSM  A
Sbjct: 276 EFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEA 335

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+L  +ME  G    P++VTY  + + F   G++  A  I+ +M   G  PN VT + LI
Sbjct: 336 LDLKNDMENHG--LEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLI 393

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  GN++EA +L  ++++ G   S    + L+  L +++++  A KLF +M A+G++
Sbjct: 394 CGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLR 453

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  S +I  LC  G+V +   LYE +     +   +S IH  +L+GLC K    +A 
Sbjct: 454 PDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIP--NSLIHGAILMGLCEKGKISQAR 511

Query: 434 KLARFMLKKRIWLQGPYVDKIVE-HLKKSGDEELITNLPKIG 474
               +++   + L     + +++ ++K+    E +    ++G
Sbjct: 512 MYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLG 553



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 146/298 (48%), Gaps = 7/298 (2%)

Query: 115 DVVEAYKEEG----CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           + V+ YK+ G        V    +++  C   +L+ +A  +L  +    L P+ + Y  +
Sbjct: 544 EAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLS-QARRLLDTIKLHGLEPNAVTYTTL 602

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           + ++CE+G+M +  EL+  M    + P  ITY  +IKG C   +L+++C L + M   G 
Sbjct: 603 MNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGL 662

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             + V+Y+ ++   C+   M +A +L  +M     +  P  VTY  +I  FC  G +K+A
Sbjct: 663 TPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLH--NLEPTSVTYNILINGFCVYGDLKDA 720

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             +L  ++      N+   +T+IK  C +G++D+A     ++V  G   S   YS+++  
Sbjct: 721 DNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGR 780

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
           L +   + EA+  F  ML+ GV PD     V++      G +   F L  ++ K G+L
Sbjct: 781 LCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHLNSEFELLAEMIKSGWL 838



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 159/349 (45%), Gaps = 9/349 (2%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
           QS Y  SS + +  C  SR  Q+  +     E  + +  VVS     ++   C K    +
Sbjct: 244 QSEYT-SSIVVDGLCRQSRF-QDAVLFFQDTEGKEFQPSVVSFN--TIMSRYC-KLGFVD 298

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
            A      M +  L PD   YN +I   C  G M  A +L   M    L PD++TY  + 
Sbjct: 299 VAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILA 358

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           KGF   G +  A  + + M   G   NLV Y+ L+ G C++G++E AL+L  EM   G  
Sbjct: 359 KGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQ 418

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            S  +++ T ++   C    +  A  +   MEA G  P+ +T STLI G C +G + +A 
Sbjct: 419 LS--IISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAI 476

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L +K+ +   + +   + ++++ L    ++ +A   F  ++ S +  D +  ++MI   
Sbjct: 477 LLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGY 536

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
              G   E   LY+ + + G   ++ +   + L+ G C      +A +L
Sbjct: 537 IKRGNTREAVKLYKQLGEKGISPTIVT--FNSLMYGFCINRKLSQARRL 583



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 136/274 (49%), Gaps = 3/274 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC    +  EA+ +   M    L PD + YN + + F   G +  A  +++ M + 
Sbjct: 322 LIHGLCIAGSMG-EALDLKNDMENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIK 380

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P+++TY  +I G C  G +E+A  L+K M  HG   ++++ + LL  +C+   ++ A
Sbjct: 381 GPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVA 440

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  EME  G    P+++TY+++I   C +G +++A+ + ++M +    PN +    ++
Sbjct: 441 FKLFCEMEANG--LRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAIL 498

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C +G + +A    D ++          Y+ ++   ++    +EA KL+ ++   G+ 
Sbjct: 499 MGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGIS 558

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           P  +  + ++   C+  ++ +   L + I+  G 
Sbjct: 559 PTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGL 592


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 180/361 (49%), Gaps = 17/361 (4%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
           Y H+S + +  C++  +++   + + +V++   +  V +  +M  I   C++ +LA   M
Sbjct: 287 YTHTSLI-DGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVM--IGGYCKEGKLARAEM 343

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            +L +M E  L P+T  Y  +I   C+ G    A ELM  M L    P+I TY ++I GF
Sbjct: 344 -LLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGF 402

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C  G++++A  + ++    G   + V Y+ L+   C+ G +  AL+L  +M ++   C P
Sbjct: 403 CKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEK--SCHP 460

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           ++ TYT++I ++C +  M+++  + D+  ++G  P + T +++I G+C  G L  A ++ 
Sbjct: 461 DIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVF 520

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           +++V  G +     Y +L+  L +  RL+EA  LF  ML   + P  +    +  E C  
Sbjct: 521 ERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHLVPCDVTRVTLAYEYCRR 580

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDS-----------DIHSVLLLGLCRKNHSVEAAKLARF 438
            ++       + ++K     + D+           D  S+ L  +  K+++V+ A    F
Sbjct: 581 DKITIAVSFLDRLDKRQQAHTADALVRKLSTVGNLDAASLFLKNVLDKHYAVDHATYTSF 640

Query: 439 M 439
           +
Sbjct: 641 I 641



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 151/318 (47%), Gaps = 6/318 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C+ S     V+   C + R  N    + R+M E    P+ + Y+  I   CE+G +  A 
Sbjct: 213 CLDSATCTVVVRAFCRQGRFRN-VTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAF 271

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSALLDG 243
            +++ M    L P++ T+ S+I G C  G +E A  LF K++K      N+  Y+ ++ G
Sbjct: 272 HVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGG 331

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+ G + RA  LLG M ++G   +PN  TYT++I   C  G    A  ++++M+  G  
Sbjct: 332 YCKEGKLARAEMLLGRMVEQG--LAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFL 389

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN  T + +I GFC +G + EAY+++    + G       Y+ L+ E  +   +  A  L
Sbjct: 390 PNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDL 449

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F +M      PD    + +I   C   Q+ +   L++    IG + +     ++ ++ G 
Sbjct: 450 FKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPT--KQTYTSMIAGY 507

Query: 424 CRKNHSVEAAKLARFMLK 441
           CR      A K+   M++
Sbjct: 508 CRLGKLTSALKVFERMVQ 525



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 133/292 (45%), Gaps = 38/292 (13%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +RPD   +  ++   C +G    AD L+  M       D  T   +++ FC  GR  +  
Sbjct: 177 VRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVT 236

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-------------GD 266
            LF+ M   G   N+V YSA +DG+C  G +++A  +L EM  +G             G 
Sbjct: 237 DLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGL 296

Query: 267 C---------------------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           C                      PNV TYT +I  +C +G +  A  +L RM   G APN
Sbjct: 297 CKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPN 356

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
             T +TLI G C  G+ D A++L++K+   G + +   Y++++    +  +++EA K+  
Sbjct: 357 TNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLR 416

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
              + G+  D +  +++I E C  G +     L++ + +     S   DIH+
Sbjct: 417 MATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAE----KSCHPDIHT 464



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ + ++M E    PD   Y  +I ++C++  M  + +L      I L P   TY SMI 
Sbjct: 446 ALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIA 505

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G+C  G+L  A  +F+ M +HGC  + + Y AL+  +C+   +E A  L   M  +    
Sbjct: 506 GYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDK--HL 563

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P  VT  ++   +C +  +  A+  LDR++    A    T   L++     GNLD A  
Sbjct: 564 VPCDVTRVTLAYEYCRRDKITIAVSFLDRLDKRQQAH---TADALVRKLSTVGNLDAASL 620

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            +  V+          Y+S +     + R   A ++  K+
Sbjct: 621 FLKNVLDKHYAVDHATYTSFINSCYESNRYALASEISEKI 660



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 17/243 (6%)

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSA---LLDGICRLGSMERALELLGEMEKEGGDCS 268
           AGRL +A  +   ++ HG    LV  +A   L  G+   G    A E    M +  G   
Sbjct: 121 AGRLREAADMLLELRSHGLP--LVVETANWVLRVGLRHPGCFAHAREAFDGMARAAGGVR 178

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P+  ++ +++   C +G  +EA  +L  M A G   +  T + +++ FC +G       L
Sbjct: 179 PDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDL 238

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
             ++   G+  +   YS+ +  L     +K+A  +  +M+  G+KP+    + +I  LC 
Sbjct: 239 FRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCK 298

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIH--SVLLLGLCRKNHSVEAAKLARF-MLKKRIW 445
            G +   F L+  + K    SS   ++H  +V++ G C++       KLAR  ML  R+ 
Sbjct: 299 IGWMERAFRLFLKLVKS---SSYKPNVHTYTVMIGGYCKEG------KLARAEMLLGRMV 349

Query: 446 LQG 448
            QG
Sbjct: 350 EQG 352


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 2/248 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   GD+     L   M      PD+ TY  +I 
Sbjct: 157 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLIN 216

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++ A  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 217 GLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 274

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P++ T +TLI G C EG+LD A+ 
Sbjct: 275 LPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFX 334

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+ PD    +++I E C
Sbjct: 335 HRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLXPDAGTYTMIINEFC 394

Query: 388 LGGQVLEG 395
             G V +G
Sbjct: 395 KKGDVWKG 402



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 128/274 (46%), Gaps = 15/274 (5%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+Y+ L++G  RLG ++   
Sbjct: 134 YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 193

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M  A  + D M   G  PN VT +TLI 
Sbjct: 194 RLKSAMLASGX--XPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLID 251

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++   +     Y++L+  L +   LK+A  L  +M   G+KP
Sbjct: 252 GHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKP 311

Query: 375 DGLACSVMIRELCLGGQVLEGF-----CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           D    + +I   C  G +   F      + E+I        +D   ++ L+ GLC++  S
Sbjct: 312 DKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIR-------LDDVAYTALISGLCQEGRS 364

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V+A K+ R ML   +         I+    K GD
Sbjct: 365 VDAEKMLREMLSVGLXPDAGTYTMIINEFCKKGD 398



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 3/169 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + AM + ++M    L PD I YN +I   C+KGD+  A +L+ 
Sbjct: 244 VTFTTLIDGHCKNGRV-DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLID 302

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    L PD  TY ++I G C  G L+ A    K M +     + VAY+AL+ G+C+ G
Sbjct: 303 EMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEG 362

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
               A ++L EM   G    P+  TYT +I  FC KG + +   +L  M
Sbjct: 363 RSVDAEKMLREMLSVG--LXPDAGTYTMIINEFCKKGDVWKGSKLLKEM 409



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 2/177 (1%)

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
            K   G  + +   G   +    + L+  FC +G++  A  + D +   G   S   Y++
Sbjct: 119 FKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNT 178

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+   +R   L E  +L S MLASG  PD    SV+I  LC   ++     L++++   G
Sbjct: 179 LMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKG 238

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            + +  +   + L+ G C+      A ++ + ML + +       + ++  L K GD
Sbjct: 239 LVPNXVT--FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 293


>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
 gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 191/391 (48%), Gaps = 25/391 (6%)

Query: 57  LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM---SRIKQNPSII 113
           + S+ ++E +   F S  +     F+WAA +S +R S+ ++NR   +   SR   +   +
Sbjct: 117 VPSSSLLEAVFDHFDSSPKFLHSLFLWAAKKSGFRPSAALFNRLINVLAKSREFDSAWSL 176

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI-------I 166
           I       EE  +VSV++  ++     +A +   A+    +  EF    +TI       +
Sbjct: 177 ITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAI----RTYEFACNLETISGTGSEGL 232

Query: 167 YNNVIRLFCEKGDMIAADELM---KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
           +  ++   C++G +  A E     + MG     P I  Y  +I G+  + +L+ A  L+ 
Sbjct: 233 FEILLDSLCKEGHVRVASEYFNRKREMG-SSFEPSIRAYNILINGWFRSRKLKHAQRLWF 291

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            MK++  +  +V Y  L++G CR+ S+E A+EL+ EM +EG    PN + Y  ++     
Sbjct: 292 EMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREG--IEPNAIVYNPIVDALGE 349

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G  KEALG+++R   L   P   T ++L+KG+C  G+L  A +++  ++  G   +   
Sbjct: 350 AGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFTPTPTT 409

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+       +  +++E+  L++KM+ SG  PD L   ++++ LC   ++     +  +++
Sbjct: 410 YNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMK 469

Query: 404 KIGFLSSVDSDI-HSVLLLGLCRKNHSVEAA 433
             GF    D D+  S +L+ L  K H  E A
Sbjct: 470 ARGF----DMDLATSTMLMHLLCKMHKFEEA 496



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 115/251 (45%), Gaps = 2/251 (0%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           S++   ++ N   ++R    A  +  +M +  + P  + Y  +I  +C    +  A EL+
Sbjct: 266 SIRAYNILINGWFRSRKLKHAQRLWFEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELV 325

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M    + P+ I Y  ++     AGR ++A G+ +          +  Y++L+ G C+ 
Sbjct: 326 DEMRREGIEPNAIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKA 385

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +  A ++L  M   G   +P   TY    + F   G ++E++ + ++M   G AP+++
Sbjct: 386 GDLSGASKILKMMIGRG--FTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKL 443

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T   L+K  C E  L+ A Q+ +++ A G        + L+  L +  + +EA   F  M
Sbjct: 444 TYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHM 503

Query: 368 LASGVKPDGLA 378
           +  G+ P  L 
Sbjct: 504 IHRGIVPQYLT 514


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 178/366 (48%), Gaps = 12/366 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPE--FDLRPDTIIYNNVIR 172
           V+    + GC+ +V    ++   LC++ R + EA+ +L+ MP+   D  PD + Y  VI 
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENR-SQEALELLQMMPDDGGDCPPDVVSYTTVIN 207

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            F ++GD+  A      M    + P+++TY S+I   C A  ++ A  +   M ++G   
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP 267

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y++++ G C  G  + A+  L +M  +G    P+VVTY S++   C  G   EA  
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG--VEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D M   G  P   T  TL++G+  +G L E + L+D +V  G   +   +S L+    
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  ++ +A  +FSKM   G+ PD +    +I  LC  G+V +    +E +  I    S  
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM--IDERLSPG 443

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG----DEELIT 468
           + +++ L+  LC  +   +A +L   ML + I L   + + I++   K G     E+L  
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD 503

Query: 469 NLPKIG 474
            + +IG
Sbjct: 504 LMVRIG 509



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 155/306 (50%), Gaps = 5/306 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C   +   EA+  L+KM    + PD + YN+++   C+ G    A ++   M   
Sbjct: 275 IVHGYCSSGQ-PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+I TY ++++G+   G L +  GL  +M R+G   N   +S L+    + G +++A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +  +M ++G   +P+ VTY +VI I C  G +++A+   ++M     +P  +  ++LI
Sbjct: 394 MLVFSKMRQQG--LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLI 451

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C+    D+A +LI +++  G       ++S++    +  R+ E+EKLF  M+  GVK
Sbjct: 452 HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 511

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  S +I   CL G++ E   L   +  +G     D   ++ L+ G C+ +   +A 
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM--KPDCVTYNTLINGYCKISRMEDAL 569

Query: 434 KLARFM 439
            L R M
Sbjct: 570 VLFREM 575



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 3/248 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGL-FKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           D I +  ++KG C   R  DA  +  + M + GC  N+ +Y+ LL G+C     + ALEL
Sbjct: 125 DAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M  +GGDC P+VV+YT+VI  F  +G + +A G    M   G  PN VT S++I   
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    +D+A +++  +V  G + +   Y+S+V     + + KEA     KM + GV+PD 
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + ++  LC  G+  E   +++ + K G    + +  +  LL G   K   VE   L 
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLL 362

Query: 437 RFMLKKRI 444
             M++  I
Sbjct: 363 DLMVRNGI 370



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 5/238 (2%)

Query: 160 LRPDTIIYNNVIRLFC-EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            R D I +  +++  C +K    A D +++ M  +   P++ +Y  ++KG C+  R ++A
Sbjct: 122 FRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEA 181

Query: 219 CGLFKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
             L ++M   G  C  ++V+Y+ +++G  + G +++A     EM   G    PNVVTY+S
Sbjct: 182 LELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRG--ILPNVVTYSS 239

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   C    M +A+ +L  M   G  PN  T ++++ G+C  G   EA   + K+ + G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                  Y+SL+  L +  R  EA K+F  M   G+KP+      +++     G ++E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 2/224 (0%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           DTI +N++I   C++G +I +++L   M  I + PDIITY ++I G+C AG++++A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   + V Y+ L++G C++  ME AL L  EME  G   SP+++TY  ++Q   
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG--VSPDIITYNIILQGLF 595

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
                  A  +   +   G      T + ++ G C     DEA ++   +          
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 655

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            ++ ++  L++  R  EA+ LF+ + A+G+ PD    S+M   L
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 3/284 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    VI  LC+  R+  +AM    +M +  L P  I+YN++I   C       A EL+
Sbjct: 409 TVTYGTVIGILCKSGRV-EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M    +  D I + S+I   C  GR+ ++  LF +M R G   +++ YS L+DG C  
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G M+ A +LL  M   G    P+ VTY ++I  +C    M++AL +   ME+ G +P+ +
Sbjct: 528 GKMDEATKLLASMVSVG--MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + +++G         A +L   +   G+      Y+ ++  L +     EA ++F  +
Sbjct: 586 TYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
             + ++ +    ++MI  L   G+  E   L+  +   G +  V
Sbjct: 646 CLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 123/268 (45%), Gaps = 3/268 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C+ ++    +I + C++ R+  E+  +   M    ++PD I Y+ +I  +C  G M  A 
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVI-ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 534

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L+  M  + + PD +TY ++I G+C   R+EDA  LF+ M+  G + +++ Y+ +L G+
Sbjct: 535 KLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGL 594

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            +      A EL   + + G      + TY  ++   C   +  EAL +   +       
Sbjct: 595 FQTRRTAAAKELYVGITESGTQLE--LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + +I      G  DEA  L   + A G V     YS +   L+    L+E + LF
Sbjct: 653 ETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLF 712

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQV 392
             M  +G   +    + ++R+L   G +
Sbjct: 713 LSMEENGCTANSRMLNSIVRKLLQRGDI 740



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G  + +    +I +   K  L +EA+ + + +   DL+ +T  +N +I    + G   
Sbjct: 612 ESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 671

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L   +    L PD+ TY  M +     G LE+   LF  M+ +GC AN    ++++
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIV 731

Query: 242 DGICRLGSMERA 253
             + + G + RA
Sbjct: 732 RKLLQRGDITRA 743


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 175/369 (47%), Gaps = 17/369 (4%)

Query: 116 VVEAYKEEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFDLR-----PDTIIYNN 169
           V+    E GC+ +V    ++   LC++ R + EA+ +L  M   D R     PD + Y  
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENR-SQEALELLHMMA--DDRGGGSPPDVVSYTT 201

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           VI  F ++GD   A      M    + PD++TY S+I   C A  ++ A  +   M ++G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              + + Y+++L G C  G  + A+  L +M  +G    P+VVTY+ ++   C  G   E
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG--VEPDVVTYSLLMDYLCKNGRCME 319

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  I D M   G  P   T  TL++G+  +G L E + L+D +V  G       +S L+ 
Sbjct: 320 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
              +  ++ +A  +FSKM   G+ P+ +    +I  LC  G+V +    +E +   G   
Sbjct: 380 AYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL-- 437

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG----DEE 465
           S  + +++ L+ GLC  N    A +L   ML + I L   + + I++   K G     E+
Sbjct: 438 SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 497

Query: 466 LITNLPKIG 474
           L   + +IG
Sbjct: 498 LFELMVRIG 506



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 153/293 (52%), Gaps = 4/293 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+  L+KM    + PD + Y+ ++   C+ G  + A ++   M    L P+I TY +++
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +G+   G L +  GL  +M R+G   +   +S L+    + G +++A+ +  +M ++G  
Sbjct: 344 QGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQG-- 401

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            +PN VTY +VI I C  G +++A+   ++M   G +P  +  ++LI G C     + A 
Sbjct: 402 LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE 461

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +LI +++  G   +   ++S++    +  R+ E+EKLF  M+  GVKP+ +  + +I   
Sbjct: 462 ELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGY 521

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           CL G++ E   L   +  +G     ++  +S L+ G C+ +   +A  L + M
Sbjct: 522 CLAGKMDEAMKLLSGMVSVGL--KPNTVTYSTLINGYCKISRMEDALVLFKEM 572



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 181/390 (46%), Gaps = 41/390 (10%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
            P   I  ++  + +G    V    ++ + LC+  R   EA  +   M +  L+P+   Y
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM-EARKIFDSMTKRGLKPEITTY 339

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
             +++ +  KG ++    L+  M    ++PD   +  +I  +   G+++ A  +F  M++
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQ 399

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ-------- 279
            G   N V Y A++  +C+ G +E A+    +M  EG   SP  + Y S+I         
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG--LSPGNIVYNSLIHGLCTCNKW 457

Query: 280 -------------------IF--------CGKGMMKEALGILDRMEALGCAPNRVTISTL 312
                              IF        C +G + E+  + + M  +G  PN +T +TL
Sbjct: 458 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTL 517

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G+C+ G +DEA +L+  +V+ G   +   YS+L+    +  R+++A  LF +M +SGV
Sbjct: 518 INGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV 577

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD +  +++++ L    +      LY  I + G  + ++   ++++L GLC+   + +A
Sbjct: 578 SPDIITYNIILQGLFQTRRTAAAKELYVRITESG--TQIELSTYNIILHGLCKNKLTDDA 635

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            ++ + +    + L+    + +++ L K G
Sbjct: 636 LQMFQNLCLMDLKLEARTFNIMIDALLKVG 665



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 135/288 (46%), Gaps = 4/288 (1%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           ++ PD   Y  +I   C  G +      +  +       D I +  ++KG C   R  DA
Sbjct: 82  EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 141

Query: 219 CGL-FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EKEGGDCSPNVVTYTS 276
             +  + M   GC  N+ +Y+ LL G+C     + ALELL  M +  GG   P+VV+YT+
Sbjct: 142 MDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTT 201

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           VI  F  +G   +A      M   G  P+ VT +++I   C    +D+A ++++ +V  G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
            +     Y+S++     + + KEA     KM + GV+PD +  S+++  LC  G+ +E  
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            +++ + K G    + +  +  LL G   K   VE   L   M++  I
Sbjct: 322 KIFDSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGI 367



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 146/310 (47%), Gaps = 4/310 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           +TI +N++I   C++G +I +++L + M  I + P++ITY ++I G+C AG++++A  L 
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   N V YS L++G C++  ME AL L  EME  G   SP+++TY  ++Q   
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG--VSPDIITYNIILQGLF 592

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
                  A  +  R+   G      T + ++ G C     D+A Q+   +          
Sbjct: 593 QTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEAR 652

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            ++ ++  L++  R  EA+ LF    ++G+ P+     +M   +   G + E   L+  +
Sbjct: 653 TFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSM 712

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           E  G   +VDS + + ++  L ++     A      + +K   L+       ++ L    
Sbjct: 713 EDNG--CTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGK 770

Query: 463 DEELITNLPK 472
            +E    LP+
Sbjct: 771 YQEYYRFLPE 780



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 130/266 (48%), Gaps = 20/266 (7%)

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           M   G  ++ PD+ TY  +I   C AGRL+        + + G   + +A++ LL G+C 
Sbjct: 75  MARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 134

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCA 303
                 A++++     E G C PNV +Y  +++  C +   +EAL +L  M      G  
Sbjct: 135 DKRTSDAMDIVLRRMTELG-CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSP 193

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ V+ +T+I GF  EG+ D+AY    +++  G +     Y+S++  L + + + +A ++
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD-------IH 416
            + M+ +GV PD +  + ++   C  GQ  E          IGFL  + SD        +
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA---------IGFLKKMRSDGVEPDVVTY 304

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKK 442
           S+L+  LC+    +EA K+   M K+
Sbjct: 305 SLLMDYLCKNGRCMEARKIFDSMTKR 330


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 150/303 (49%), Gaps = 7/303 (2%)

Query: 134 VIFNLCEKARL-ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           ++  LC+     A E M  + +M EF   P     +N++    +KG++ +A +L+  +  
Sbjct: 291 LVLGLCKVEEFEAGEEM--MNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKK 348

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             + P +  Y ++I   C  G+L++A  LF  M   G   N V YS L+D  C+ G ++ 
Sbjct: 349 FGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDV 408

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           AL  LG+M + G      V  Y+S+I   C  G ++ A  + D M A G  PN V  ++L
Sbjct: 409 ALHFLGKMTEVG--IKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSL 466

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G+C EG L  A++L  ++   G   +   +++L+  L    R+ EA KLF +M+   V
Sbjct: 467 ISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNV 526

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            P+ +  +V+I   C  G  +  F L +++ + G +   D+  +  L+ GLC      EA
Sbjct: 527 IPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVP--DTYTYRPLISGLCSTGRVSEA 584

Query: 433 AKL 435
            + 
Sbjct: 585 REF 587



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 149/325 (45%), Gaps = 4/325 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  ++ K+ +F + P   +YN +I   C+ G +  A+ L   MG   L+P+ +TY  +I 
Sbjct: 339 AFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILID 398

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            FC  G+L+ A      M   G  A +  YS+L+ G C+LG +  A  L  EM   G   
Sbjct: 399 SFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANG--L 456

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PNVV YTS+I  +C +G +  A  +   M   G +PN  T + LI G C    + EA +
Sbjct: 457 KPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANK 516

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  ++V    + +   Y+ L+    +      A +L  +M+  G+ PD      +I  LC
Sbjct: 517 LFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLC 576

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
             G+V E      D++  G    ++    S LL G C++    +A    R ML + + + 
Sbjct: 577 STGRVSEAREFMNDLQ--GEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMD 634

Query: 448 GPYVDKIVEHLKKSGDEELITNLPK 472
                 ++  + +  D   I +L K
Sbjct: 635 LVCYSVLIYGILRQQDRRSIIDLLK 659



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 152/286 (53%), Gaps = 7/286 (2%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C++ RL ++A+   R+M    +  D + Y+ +I     + D  +  +L+K M    L PD
Sbjct: 611 CKEGRL-DDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPD 669

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            + Y +MI     AG L+ A GL+ +M   GC  N+V Y+AL++G+C++G M++A  L  
Sbjct: 670 NVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCR 729

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM     +  PN  TY   +     +G +++A+ + D +   G   N VT + LI+GFC 
Sbjct: 730 EML--ASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE-GFLANTVTYNILIRGFCK 786

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G + EA +++  ++  G       YS+++ E  R   LKEA KL+  ML  GV PD +A
Sbjct: 787 LGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVA 846

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDSDIHSVLLL 421
            + +I   C+ G++ + F L +D+ + G     ++ +S IH   L+
Sbjct: 847 YNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLM 892



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 142/281 (50%), Gaps = 4/281 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L+P+ +IY ++I  +C++G++  A  L   M    + P+  T+ ++I G C+A R+ +A 
Sbjct: 456 LKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEAN 515

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF  M       N V Y+ L++G C+ G+  RA ELL EM ++G    P+  TY  +I 
Sbjct: 516 KLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKG--LVPDTYTYRPLIS 573

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G + EA   ++ ++      N +  S L+ G+C EG LD+A     +++  G   
Sbjct: 574 GLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAM 633

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
              CYS L+  ++R +  +    L  +M   G++PD +  + MI      G +   F L+
Sbjct: 634 DLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLW 693

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           + +   G L +V +  ++ L+ GLC+     +A  L R ML
Sbjct: 694 DIMVSEGCLPNVVT--YTALINGLCKIGLMDKAELLCREML 732



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 157/353 (44%), Gaps = 35/353 (9%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           VV    + G +  ++ +  + N   + R    A+ +  ++    LRPD  +Y  V+R  C
Sbjct: 167 VVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLC 226

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           E  D I A E++  M        + TY   I+G C   R+ +A  +  ++   G  A++ 
Sbjct: 227 ELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVG 286

Query: 236 AYSALLDGICRLGSMERALELLGEM-------------------EKEGG----------- 265
            Y  L+ G+C++   E   E++ EM                    K+G            
Sbjct: 287 TYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKV 346

Query: 266 ---DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
                +P++  Y ++I   C  G + EA  + + M   G  PN VT S LI  FC  G L
Sbjct: 347 KKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKL 406

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           D A   + K+   G  ++   YSSL+    +  +L+ A+ LF +M+A+G+KP+ +  + +
Sbjct: 407 DVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSL 466

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           I   C  G++   F LY ++   G   S ++   + L+ GLC  N   EA KL
Sbjct: 467 ISGYCKEGELHNAFRLYHEMTGKGI--SPNTYTFTALISGLCHANRMAEANKL 517



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 157/329 (47%), Gaps = 6/329 (1%)

Query: 115 DVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +V+   +  GC +SV    V I  LC+  R+  EA+ +   +    LR D   Y  ++  
Sbjct: 236 EVIGRMESSGCDLSVATYNVFIRGLCKNQRVW-EAVEIKNLLSYKGLRADVGTYCTLVLG 294

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C+  +  A +E+M  M      P      +++ G    G +  A  L   +K+ G A +
Sbjct: 295 LCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPS 354

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           L  Y+AL++ +C+ G ++ A  L   M  +G    PN VTY+ +I  FC +G +  AL  
Sbjct: 355 LFVYNALINSMCKDGKLDEAESLFNNMGHKG--LFPNDVTYSILIDSFCKRGKLDVALHF 412

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L +M  +G        S+LI G C  G L  A  L D+++A G   +   Y+SL+    +
Sbjct: 413 LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCK 472

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
              L  A +L+ +M   G+ P+    + +I  LC   ++ E   L+ ++ +   +   + 
Sbjct: 473 EGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIP--NE 530

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             ++VL+ G C++ ++V A +L   M++K
Sbjct: 531 VTYNVLIEGHCKEGNTVRAFELLDEMVEK 559



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 116/262 (44%), Gaps = 3/262 (1%)

Query: 57  LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDV 116
           +D  C   +++     Q +  I   +        R  + +Y    + +    N  +   +
Sbjct: 633 MDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGL 692

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
            +    EGC+ +V     + N   K  L ++A  + R+M   +  P+   Y   +     
Sbjct: 693 WDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTS 752

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
           +G++  A +L   + L     + +TY  +I+GFC  GR+++A  +   M   G + + ++
Sbjct: 753 EGNIEKAIQLHDVL-LEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCIS 811

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           YS ++   CR G ++ A++L   M   G   +P+ V Y  +I   C  G + +A  + D 
Sbjct: 812 YSTIIYEYCRRGDLKEAIKLWESMLNRG--VNPDTVAYNFLIYGCCVTGELTKAFELRDD 869

Query: 297 MEALGCAPNRVTISTLIKGFCV 318
           M   G  PNR T ++LI G C+
Sbjct: 870 MMRRGVKPNRATYNSLIHGTCL 891



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 1/117 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+  R+  EA  VL  M +  + PD I Y+ +I  +C +GD+  A +L + M   
Sbjct: 780 LIRGFCKLGRI-QEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNR 838

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
            + PD + Y  +I G C  G L  A  L   M R G   N   Y++L+ G C + S+
Sbjct: 839 GVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSV 895



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 6/202 (2%)

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +IQ +       + L ++  M   G  P   T+S ++ G         A  L D++V+ G
Sbjct: 151 LIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSG 210

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
                  Y+++V  L   K    A ++  +M +SG        +V IR LC   +V E  
Sbjct: 211 LRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAV 270

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456
            +   +   G  + V +  +  L+LGLC+        ++   M++         V  +V+
Sbjct: 271 EIKNLLSYKGLRADVGT--YCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVD 328

Query: 457 HLKKSGD----EELITNLPKIG 474
            L+K G+     +L+  + K G
Sbjct: 329 GLRKKGNIGSAFDLVNKVKKFG 350


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 171/354 (48%), Gaps = 8/354 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  K+E C V+  +   I     +     +A+ V  KM +F ++P    Y  V  +  
Sbjct: 72  MLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILV 131

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC-NAGRLEDACGLFKVMKRHGCAANL 234
           E+  +  A    K M    + P +++   +IK  C N   +E A  LF+ M   GC  + 
Sbjct: 132 EENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDS 191

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             Y  L++G+C+LG + +A ELL EME++G   SP+VV+YTS+I   C    + EA+ +L
Sbjct: 192 YTYGTLINGLCKLGKISQAKELLDEMEEKG--LSPSVVSYTSLIHGLCQSNNLDEAIELL 249

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           + M   G  PN  T S+L+ G C  G+  +A +L++ +V    + +   YS+L+  L + 
Sbjct: 250 EEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKE 309

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS- 413
            + +EA ++  +M   G+KPD      +I  LC      E     +++   G   +  S 
Sbjct: 310 GKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASW 369

Query: 414 ----DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
                +H++++ GLC       A +L   M  + I ++    D +V+   K GD
Sbjct: 370 TFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGD 423



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 160/332 (48%), Gaps = 12/332 (3%)

Query: 121 KEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           +E+G   +V  + ++   LC+       A  + R+MP    +PD+  Y  +I   C+ G 
Sbjct: 147 REKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGK 206

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           +  A EL+  M    L P +++Y S+I G C +  L++A  L + M  +G   N+  YS+
Sbjct: 207 ISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSS 266

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+DG+C+ G   +A+ELL  M +      PN+VTY+++I   C +G  +EA+ ILDRM  
Sbjct: 267 LMDGLCKSGHSSQAMELLEVMVRR--RLLPNMVTYSTLINGLCKEGKHREAVEILDRMRL 324

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS------SLVVE-LV 352
            G  P+      +I G C   N  EA   ID++  GG   +   ++      ++VV+ L 
Sbjct: 325 QGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLC 384

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
                  A +L+  M   G+  +      +++  C  G + +   + E++   G +   D
Sbjct: 385 NNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGCIP--D 442

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             + +VL+ GL  +    E  +L    LK++ 
Sbjct: 443 EGMWNVLMCGLWDRKKVRETTELLVAELKQKF 474



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 136/285 (47%), Gaps = 16/285 (5%)

Query: 88  SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLAN 146
            SY + + + N  C++ +I Q      ++++  +E+G   SV     +I  LC+   L +
Sbjct: 190 DSYTYGTLI-NGLCKLGKISQAK----ELLDEMEEKGLSPSVVSYTSLIHGLCQSNNL-D 243

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ +L +M    + P+   Y++++   C+ G    A EL++ M    L P+++TY ++I
Sbjct: 244 EAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLI 303

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C  G+  +A  +   M+  G   +   Y  ++ G+C   + + A   + EM    G 
Sbjct: 304 NGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMAL--GG 361

Query: 267 CSPNVVTYT-------SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
            SPN  ++T        V+Q  C       A  +   M   G +    T   L+K FC  
Sbjct: 362 ISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKR 421

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           G+L++A +++++++  G +   G ++ L+  L   K+++E  +L 
Sbjct: 422 GDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRKKVRETTELL 466



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 115/248 (46%), Gaps = 5/248 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D  T+ +MI    +  +   A G+ + MK+  C      +  +  G  R+     A+ + 
Sbjct: 49  DHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVF 108

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +ME       P   +Y +V  I   +  +K A+G    M   G  P  V+++ LIK  C
Sbjct: 109 HKMED--FQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALC 166

Query: 318 V-EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
             E  ++ A++L  ++   G       Y +L+  L +  ++ +A++L  +M   G+ P  
Sbjct: 167 KNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSV 226

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           ++ + +I  LC    + E   L E++   G   +V +  +S L+ GLC+  HS +A +L 
Sbjct: 227 VSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFT--YSSLMDGLCKSGHSSQAMELL 284

Query: 437 RFMLKKRI 444
             M+++R+
Sbjct: 285 EVMVRRRL 292


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 158/344 (45%), Gaps = 40/344 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   +L + A  +  KMP      D + Y  +I  FCE G +  A EL + +   
Sbjct: 170 LILGYCRTQQL-DVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELE-- 226

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ T+ +++KG C+A R E+   + + MK  G      AY+AL+D  CR    E A
Sbjct: 227 --QPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEA 284

Query: 254 LELLGEMEKEG---------------------------------GDCSPNVVTYTSVIQI 280
            ++L EM   G                                   C PNV TY +++Q 
Sbjct: 285 EKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQG 344

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC  G + +A+ +LD+M   G  P+ VT + LI+G C++G+++ A++L+  +   G  + 
Sbjct: 345 FCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAAD 404

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ L+  L +T ++ EA  LF  +   G++P+ +  + +I  LC GG+        E
Sbjct: 405 QYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLE 464

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            +   G   + D+  +S  +  LC+   S E       ML+K +
Sbjct: 465 KMVSAG--CAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDV 506



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 2/271 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++  KE G   + +    + +L  + + A EA  +L +M +  L P  +    V+  +C
Sbjct: 252 MLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYC 311

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            +G M  A  + + M L    P++ TY +M++GFCN G++  A  L   M+  G   ++V
Sbjct: 312 REGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVV 371

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L+ G C  G +E A  LL  M  EG   + +  TY  +I   C  G + EA  + D
Sbjct: 372 TYNLLIRGQCIDGHIESAFRLLRLM--EGNGLAADQYTYNVLIDALCKTGKVDEACSLFD 429

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            +E  G  PN VT +T+I G C  G  D A   ++K+V+ G       YS  +  L +TK
Sbjct: 430 GLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTK 489

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
             +E      +ML   VKP  +  +++I  L
Sbjct: 490 GSREGLSFIDEMLQKDVKPSTVNYTIVIDRL 520



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 152/310 (49%), Gaps = 8/310 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    V+   C + R++  A+ V   M      P+   YN +++ FC  G +  A  L+
Sbjct: 300 AVTCTAVVNAYCREGRMSG-AVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALL 358

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M    + PD++TY  +I+G C  G +E A  L ++M+ +G AA+   Y+ L+D +C+ 
Sbjct: 359 DQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKT 418

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ++ A  L   +E  G    PN VT+ +VI   C  G    A   L++M + GCAP+  
Sbjct: 419 GKVDEACSLFDGLEYRG--IRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTY 476

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S  I+  C      E    ID+++      S   Y+ ++  L + +    A +++ +M
Sbjct: 477 TYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQM 536

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG---LC 424
           ++ G  PD +  +  +R  C  G++ E   +  +++K G +  VD+  ++ L+ G   + 
Sbjct: 537 VSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGII--VDAMAYNTLIDGHTSIG 594

Query: 425 RKNHSVEAAK 434
           + +H+V   K
Sbjct: 595 KTDHAVTILK 604



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 139/280 (49%), Gaps = 12/280 (4%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P    YN +IR  C + D+  A   +  M      PD  T+ S+I G+C   +L+ A  L
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDL 186

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  M   G + + V+Y+AL++G C  G ++ ALEL  E+E+      P++ T+ ++++  
Sbjct: 187 FDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ------PDMYTHAALVKGL 240

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C     +E L +L +M+ LG  P     + L+  +C E   +EA ++++++   G V   
Sbjct: 241 CDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCA 300

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
              +++V    R  R+  A ++F  M   G +P+    + M++  C  G+V +   L + 
Sbjct: 301 VTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQ 360

Query: 402 IEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFM 439
           + + G    V+ D+  +++L+ G C   H   A +L R M
Sbjct: 361 MRECG----VEPDVVTYNLLIRGQCIDGHIESAFRLLRLM 396



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 136/315 (43%), Gaps = 31/315 (9%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI-RLFCEKGDMIAADELMKGMGLI 193
           I NLC K + + E +  + +M + D++P T+ Y  VI RLF E+   +A   +   M  +
Sbjct: 482 IENLC-KTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLAT-RIWGQMVSL 539

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD++TY + ++ +CN GRL +A  +   MK+ G   + +AY+ L+DG   +G  + A
Sbjct: 540 GCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHA 599

Query: 254 LELLGEMEKEGGDCSPNVVTY--------------------TSVIQIFCGKGMMKEALGI 293
           + +L  M   G    PN  T+                    TSV +       + +   +
Sbjct: 600 VTILKHM--TGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTI----ELADVFEL 653

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
            + M+      +      +++GF  E  LDE   L+  +       +   Y+SLV    +
Sbjct: 654 FELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCK 713

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            +   +A  L   M+  G  P+ ++   ++      GQ      ++  +    +  + D 
Sbjct: 714 LRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEY--NTDE 771

Query: 414 DIHSVLLLGLCRKNH 428
            +  +++ GL R+ H
Sbjct: 772 IVWKIIIDGLIRQGH 786



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 7/205 (3%)

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            + +LL    R       L L   M   G   +P   TY ++I+  C +  ++ A   L 
Sbjct: 95  TFRSLLTHFSRYALTPLMLRLFAHMYHHGPP-APTGATYNALIRALCRRADLRHAQRYLS 153

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   G  P+  T ++LI G+C    LD A  L DK+   G       Y++L+     T 
Sbjct: 154 LMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETG 213

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R+ EA +LF ++     +PD    + +++ LC   +  EG  + + ++++G+  +  +  
Sbjct: 214 RVDEALELFREL----EQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRA-- 267

Query: 416 HSVLLLGLCRKNHSVEAAKLARFML 440
           ++ L+   CR+  + EA K+   M 
Sbjct: 268 YAALVDLWCREQKAEEAEKMLNEMF 292



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 113/292 (38%), Gaps = 58/292 (19%)

Query: 89  SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
           +Y +S F+ N  C+    ++  S I ++++   +   V    ++  +F    K R    A
Sbjct: 475 TYTYSPFIEN-LCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLF----KERNYGLA 529

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             +  +M      PD + Y   +R +C +G +  A+ ++  M    +  D + Y ++I G
Sbjct: 530 TRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDG 589

Query: 209 FCNAGR---------------------------------------------------LED 217
             + G+                                                   L D
Sbjct: 590 HTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELAD 649

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
              LF++MK++   ++  AY A+L+G      ++    L+  M+++  D   N   YTS+
Sbjct: 650 VFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKED--DLPLNEDIYTSL 707

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +  FC   M  +A  +L  M   G  PN ++   L+ GF  EG  D A ++ 
Sbjct: 708 VNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIF 759



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 75/167 (44%), Gaps = 2/167 (1%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + ++ E  K+     S +    I     + R  +E   ++  M E DL  +  IY +++ 
Sbjct: 650 VFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVN 709

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            FC+      A  L+  M      P++I+Y  ++ GF   G+ + A  +F+ ++      
Sbjct: 710 CFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNT 769

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           + + +  ++DG+ R G  +   +++  +E+    C P+  TY  + +
Sbjct: 770 DEIVWKIIIDGLIRQGHPDMCHDMISILEQM--KCKPSDETYAMLTE 814



 Score = 45.8 bits (107), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 2/150 (1%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y+++++GF    RL++   L   MK      N   Y++L++  C+L     A  LL  M 
Sbjct: 669 YLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMI 728

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G    PN+++Y  ++  F  +G    A  I   +       + +    +I G   +G+
Sbjct: 729 GHG--FLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGH 786

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            D  + +I  +       S   Y+ L  EL
Sbjct: 787 PDMCHDMISILEQMKCKPSDETYAMLTEEL 816


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 178/366 (48%), Gaps = 12/366 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPE--FDLRPDTIIYNNVIR 172
           V+    + GC+ +V    ++   LC++ R + EA+ +L+ MP+   D  PD + Y  VI 
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENR-SQEALELLQMMPDDGGDCPPDVVSYTTVIN 207

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            F ++GD+  A      M    + P+++TY S+I   C A  ++ A  +   M ++G   
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP 267

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y++++ G C  G  + A+  L +M  +G    P+VVTY S++   C  G   EA  
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG--VEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D M   G  P   T  TL++G+  +G L E + L+D +V  G   +   +S L+    
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  ++ +A  +FSKM   G+ PD +    +I  LC  G+V +    +E +  I    S  
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM--IDERLSPG 443

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG----DEELIT 468
           + +++ L+  LC  +   +A +L   ML + I L   + + I++   K G     E+L  
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD 503

Query: 469 NLPKIG 474
            + +IG
Sbjct: 504 LMVRIG 509



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 155/306 (50%), Gaps = 5/306 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C   +   EA+  L+KM    + PD + YN+++   C+ G    A ++   M   
Sbjct: 275 IVHGYCSSGQ-PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+I TY ++++G+   G L +  GL  +M R+G   N   +S L+    + G +++A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +  +M ++G   +P+ VTY +VI I C  G +++A+   ++M     +P  +  ++LI
Sbjct: 394 MLVFSKMRQQG--LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLI 451

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C+    D+A +LI +++  G       ++S++    +  R+ E+EKLF  M+  GVK
Sbjct: 452 HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 511

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  S +I   CL G++ E   L   +  +G     D   ++ L+ G C+ +   +A 
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM--KPDCVTYNTLINGYCKISRMEDAL 569

Query: 434 KLARFM 439
            L R M
Sbjct: 570 VLFREM 575



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 3/248 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGL-FKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           D I +  ++KG C   R  DA  +  + M + GC  N+ +Y+ LL G+C     + ALEL
Sbjct: 125 DAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M  +GGDC P+VV+YT+VI  F  +G + +A G    M   G  PN VT S++I   
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    +D+A +++  +V  G + +   Y+S+V     + + KEA     KM + GV+PD 
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + ++  LC  G+  E   +++ + K G    + +  +  LL G   K   VE   L 
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLL 362

Query: 437 RFMLKKRI 444
             M++  I
Sbjct: 363 DLMVRNGI 370



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 5/238 (2%)

Query: 160 LRPDTIIYNNVIRLFC-EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            R D I +  +++  C +K    A D +++ M  +   P++ +Y  ++KG C+  R ++A
Sbjct: 122 FRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEA 181

Query: 219 CGLFKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
             L ++M   G  C  ++V+Y+ +++G  + G +++A     EM   G    PNVVTY+S
Sbjct: 182 LELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRG--ILPNVVTYSS 239

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   C    M +A+ +L  M   G  PN  T ++++ G+C  G   EA   + K+ + G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                  Y+SL+  L +  R  EA K+F  M   G+KP+      +++     G ++E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 2/224 (0%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           DTI +N++I   C++G +I +++L   M  I + PDIITY ++I G+C AG++++A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   + V Y+ L++G C++  ME AL L  EME  G   SP+++TY  ++Q   
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG--VSPDIITYNIILQGLF 595

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
                  A  +   +   G      T + ++ G C     DEA ++   +          
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 655

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            ++ ++  L++  R  EA+ LF+ + A+G+ PD    S+M   L
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 3/284 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    VI  LC+  R+  +AM    +M +  L P  I+YN++I   C       A EL+
Sbjct: 409 TVTYGTVIGILCKSGRV-EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M    +  D I + S+I   C  GR+ ++  LF +M R G   +++ YS L+DG C  
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G M+ A +LL  M   G    P+ VTY ++I  +C    M++AL +   ME+ G +P+ +
Sbjct: 528 GKMDEATKLLASMVSVG--MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + +++G         A +L   +   G+      Y+ ++  L +     EA ++F  +
Sbjct: 586 TYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
             + ++ +    ++MI  L   G+  E   L+  +   G +  V
Sbjct: 646 CLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 123/268 (45%), Gaps = 3/268 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C+ ++    +I + C++ R+  E+  +   M    ++PD I Y+ +I  +C  G M  A 
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVI-ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 534

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L+  M  + + PD +TY ++I G+C   R+EDA  LF+ M+  G + +++ Y+ +L G+
Sbjct: 535 KLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGL 594

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            +      A EL   + + G      + TY  ++   C   +  EAL +   +       
Sbjct: 595 FQTRRTAAAKELYVGITESGTQLE--LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + +I      G  DEA  L   + A G V     YS +   L+    L+E + LF
Sbjct: 653 ETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLF 712

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQV 392
             M  +G   +    + ++R+L   G +
Sbjct: 713 LSMEENGCTANSRMLNSIVRKLLQRGDI 740



 Score = 42.0 bits (97), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G  + +    +I +   K  L +EA+ + + +   DL+ +T  +N +I    + G   
Sbjct: 612 ESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 671

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L   +    L PD+ TY  M +     G LE+   LF  M+ +GC AN    ++++
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIV 731

Query: 242 DGICRLGSMERA 253
             + + G + RA
Sbjct: 732 RKLLQRGDITRA 743


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 151/305 (49%), Gaps = 5/305 (1%)

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           ++    +LA+ A  V  +M    ++P  + +N ++   C+  D+  A+ L   M    + 
Sbjct: 251 DMIRSGKLAS-ARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIA 309

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+ TY + I+G C  GR++DA  +F+ M   G   N V  + L+D  C+ G +   LEL
Sbjct: 310 PDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLEL 369

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             EM   G     ++V Y +++  FC    MK A  I++ M   G  P++VT +TLI G 
Sbjct: 370 RWEMATRG--VKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGC 427

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C EG LD A ++  ++   G       Y++L+  L +  R  +AE++  +M+ +G++PD 
Sbjct: 428 CKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDN 487

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
              +++I   C  G V  GF   ++++  G    + +  ++V++ G C       A  L 
Sbjct: 488 TTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVT--YNVVMNGFCSLGQMKNADMLL 545

Query: 437 RFMLK 441
             ML 
Sbjct: 546 NAMLN 550



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 131/258 (50%), Gaps = 3/258 (1%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I  LC+  R+  +AM +  +M E  L P+T++   +I   C++GD+ A  EL   M    
Sbjct: 319 IQGLCKTGRI-QDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRG 377

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           +  D++ Y +++ GFC    ++ A  + + M++ G   + V Y+ L+DG C+ G ++ A+
Sbjct: 378 VKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAM 437

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           E+  EM  EG   + + VTYT++I      G   +A  IL  M   G  P+  T + +I 
Sbjct: 438 EMKQEMSDEG--VALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVID 495

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
            FC  G++   ++ + ++   G       Y+ ++       ++K A+ L + ML  GV P
Sbjct: 496 AFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCP 555

Query: 375 DGLACSVMIRELCLGGQV 392
           + +  ++++   C  G+V
Sbjct: 556 NDITYNILLDGHCKHGKV 573



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 135/280 (48%), Gaps = 24/280 (8%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS------------VKMMKVIFN-----L 138
           M+   CE   +  N  ++  +++A+ +EG V +            VK   V +N      
Sbjct: 334 MFEEMCERG-LNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGF 392

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C + R    A  ++ +M +  L+PD + Y  +I   C++G++  A E+ + M    +  D
Sbjct: 393 C-RVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALD 451

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            +TY ++I G   AGR  DA  +   M   G   +   Y+ ++D  C+ G ++   + L 
Sbjct: 452 DVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLK 511

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM+ +G +  P +VTY  V+  FC  G MK A  +L+ M  +G  PN +T + L+ G C 
Sbjct: 512 EMQNKGKN--PGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCK 569

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
            G + +  +L     A G VS  G Y+SL+ E V+ K  K
Sbjct: 570 HGKVRDTEELKS---AKGMVSDFGVYTSLINEFVKKKSAK 606



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 129/325 (39%), Gaps = 67/325 (20%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD--------------------- 242
           ++ K + + G L D C L  +  R G    + A+S L++                     
Sbjct: 180 AVAKVYADEGLLPDGCSLLLLALRRGIRVPMPAWSDLMNRLPSVPEAYAFYLHLLDAGVP 239

Query: 243 -----------GICRLGSMERALELLGEMEKEG-------------GDC----------- 267
                       + R G +  A  +  EM + G             G C           
Sbjct: 240 PEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANAL 299

Query: 268 ---------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
                    +P+V TY + IQ  C  G +++A+ + + M   G  PN V ++TLI   C 
Sbjct: 300 RGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCK 359

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           EG++    +L  ++   G  +    Y++LV    R + +K A  +  +M   G+KPD + 
Sbjct: 360 EGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVT 419

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            + +I   C  G++     + +++   G   ++D   ++ L+ GL +   SV+A ++   
Sbjct: 420 YTTLIDGCCKEGELDTAMEMKQEMSDEGV--ALDDVTYTALISGLSKAGRSVDAERILCE 477

Query: 439 MLKKRIWLQGPYVDKIVEHLKKSGD 463
           M++  +         +++   K+GD
Sbjct: 478 MMEAGLQPDNTTYTMVIDAFCKNGD 502


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 162/326 (49%), Gaps = 8/326 (2%)

Query: 113  IIDVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
            I D V+ + E   +G +   K   ++ N   KAR    A+ +  KM + + + D   Y  
Sbjct: 1032 IPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGM 1090

Query: 170  VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
            +I   C+ G    A ++   M    + PD++ Y S++ G C  GRL++A   FK M+  G
Sbjct: 1091 IIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 1150

Query: 230  CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
             +A++  Y++L+ G+ R G  +     L  M   G   SP+  T+T +I   C +G + E
Sbjct: 1151 ISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG--FSPDAFTFTILIDGLCKEGKVGE 1208

Query: 290  ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
            A  IL+ M   G  P+ +T +TL+ G C+ G L++A +L + +   G   +   Y+ L+ 
Sbjct: 1209 AQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILIN 1268

Query: 350  ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
               + +++ EA + F +M   G+KP  +  + +I  LC  G+V     L+ +++  G   
Sbjct: 1269 GYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFL 1328

Query: 410  SVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + +  + VLL GLC+  H  EA  L
Sbjct: 1329 KLST--YCVLLDGLCKNGHLEEAMDL 1352



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 159/367 (43%), Gaps = 50/367 (13%)

Query: 92   HSSFMYNRACEMSRIKQNPSIIIDVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEA 148
            +SS M +  C   R+K+        +E +KE    G    V     + +   +A L  E 
Sbjct: 1123 YSSLM-DGLCRFGRLKE-------ALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEV 1174

Query: 149  MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             W L  M +    PD   +  +I   C++G +  A ++++ M      PDI+TY +++ G
Sbjct: 1175 TWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNG 1234

Query: 209  FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
             C  G+LEDA  LF+ +   G   N+ +Y+ L++G C+   ++ A     EM  +G    
Sbjct: 1235 LCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKG--LK 1292

Query: 269  PNVVTYTSVI-------------QIF----------------------CGKGMMKEALGI 293
            P+ VTY ++I             ++F                      C  G ++EA+ +
Sbjct: 1293 PSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDL 1352

Query: 294  LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
               ++     PN    S L+ G C  G L+EA++  D++   G       Y+ L+  L  
Sbjct: 1353 FQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCN 1412

Query: 354  TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
               L EA KL  +M   G  PD +  +V+I+ L    ++ E   L E++    F  S D 
Sbjct: 1413 KGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNF--SPDE 1470

Query: 414  DIHSVLL 420
             + S+LL
Sbjct: 1471 AVTSMLL 1477



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 124/283 (43%), Gaps = 5/283 (1%)

Query: 153  RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
            RK+ +  ++PD    N +I   C    +     +  G       PD +T  +++KG    
Sbjct: 970  RKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWME 1029

Query: 213  GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
              + DA  LF  M + G   +   Y  L++G+C+      A++L    EK  G+C  +V 
Sbjct: 1030 NGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKL---HEKMKGNCKGDVF 1086

Query: 273  TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
            TY  +I   C  GM  EAL +   M   G  P+ V  S+L+ G C  G L EA +   ++
Sbjct: 1087 TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEM 1146

Query: 333  VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
               G  +    Y+SL+  L R    KE     + M+  G  PD    +++I  LC  G+V
Sbjct: 1147 EGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKV 1206

Query: 393  LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             E   + E +   G     D   ++ L+ GLC      +A KL
Sbjct: 1207 GEAQQILELMRHKG--KEPDILTYNTLMNGLCLVGQLEDATKL 1247


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 151/305 (49%), Gaps = 5/305 (1%)

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           ++    +LA+ A  V  +M    ++P  + +N ++   C+  D+  A+ L   M    + 
Sbjct: 123 DMIRSGKLAS-ARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIA 181

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+ TY + I+G C  GR++DA  +F+ M   G   N V  + L+D  C+ G +   LEL
Sbjct: 182 PDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLEL 241

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             EM   G     ++V Y +++  FC    MK A  I++ M   G  P++VT +TLI G 
Sbjct: 242 RWEMATRG--VKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGC 299

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C EG LD A ++  ++   G       Y++L+  L +  R  +AE++  +M+ +G++PD 
Sbjct: 300 CKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDN 359

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
              +++I   C  G V  GF   ++++  G    + +  ++V++ G C       A  L 
Sbjct: 360 TTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVT--YNVVMNGFCSLGQMKNADMLL 417

Query: 437 RFMLK 441
             ML 
Sbjct: 418 NAMLN 422



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 131/258 (50%), Gaps = 3/258 (1%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I  LC+  R+  +AM +  +M E  L P+T++   +I   C++GD+ A  EL   M    
Sbjct: 191 IQGLCKTGRI-QDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRG 249

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           +  D++ Y +++ GFC    ++ A  + + M++ G   + V Y+ L+DG C+ G ++ A+
Sbjct: 250 VKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAM 309

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           E+  EM  EG   + + VTYT++I      G   +A  IL  M   G  P+  T + +I 
Sbjct: 310 EMKQEMSDEG--VALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVID 367

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
            FC  G++   ++ + ++   G       Y+ ++       ++K A+ L + ML  GV P
Sbjct: 368 AFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCP 427

Query: 375 DGLACSVMIRELCLGGQV 392
           + +  ++++   C  G+V
Sbjct: 428 NDITYNILLDGHCKHGKV 445



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 135/280 (48%), Gaps = 24/280 (8%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS------------VKMMKVIFN-----L 138
           M+   CE   +  N  ++  +++A+ +EG V +            VK   V +N      
Sbjct: 206 MFEEMCERG-LNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGF 264

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C + R    A  ++ +M +  L+PD + Y  +I   C++G++  A E+ + M    +  D
Sbjct: 265 C-RVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALD 323

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            +TY ++I G   AGR  DA  +   M   G   +   Y+ ++D  C+ G ++   + L 
Sbjct: 324 DVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLK 383

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM+ +G +  P +VTY  V+  FC  G MK A  +L+ M  +G  PN +T + L+ G C 
Sbjct: 384 EMQNKGKN--PGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCK 441

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
            G + +  +L     A G VS  G Y+SL+ E V+ K  K
Sbjct: 442 HGKVRDTEELKS---AKGMVSDFGVYTSLINEFVKKKSAK 478



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           ++ K + + G L D C L  +  R G    + A+S L++   RL S+  A      +   
Sbjct: 52  AVAKVYADEGLLPDGCSLLLLALRRGIRVPMPAWSDLMN---RLPSVPEAYAFYLHLLDA 108

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G    P    +  +++     G +  A  + D M   G  P  VT +TL+ G C   +L+
Sbjct: 109 G--VPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLN 166

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A  L   +   G       Y + +  L +T R+++A ++F +M   G+ P+ +  + +I
Sbjct: 167 NANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLI 226

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
              C  G V  G  L  ++   G     D   ++ L+ G CR
Sbjct: 227 DAHCKEGDVTAGLELRWEMATRGV--KADLVAYNALVNGFCR 266


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 161/323 (49%), Gaps = 10/323 (3%)

Query: 127 VSVKMMKVIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           + VK+    FN+     C + R   EA+ VL KM ++   PD I YN ++   C+KG + 
Sbjct: 191 IGVKINTNSFNILIHGSCMENRFG-EAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLN 249

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L+  M    L+P+  T+  ++ G C  G L++A  + ++M ++    +   Y+ ++
Sbjct: 250 EARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMI 309

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G C+ G +  A+ L  EM  E    SP+VVTY ++I      G  +E   +++ ME  G
Sbjct: 310 SGFCKQGRIAEAMRLREEM--ENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRG 367

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN VT + ++K F  +G +DE  + + K+   G +     Y++L+    +  ++ EA 
Sbjct: 368 MKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAF 427

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +L  +M   G+K D +  + M+R LC   ++ E   L     + G+   VD   +  L++
Sbjct: 428 RLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYF--VDEVSYGTLII 485

Query: 422 GLCRKNHSVEAAKLARFMLKKRI 444
           G  +   + +A +L   M +K I
Sbjct: 486 GYFKHEKASQALRLWDEMKEKEI 508



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 165/342 (48%), Gaps = 8/342 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+ +   +++D+    K +G   +     ++   C +     EA  V+  M +  +
Sbjct: 243 CKKGRLNEARDLLLDM----KNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSV 298

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   YN +I  FC++G +  A  L + M  + L PD++TY ++I G    G  E+   
Sbjct: 299 VPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFK 358

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L + M+  G   N V Y+ ++    + G M+   + + +ME+ G  C P++VTY ++I  
Sbjct: 359 LIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESG--CLPDIVTYNTLISW 416

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G M EA  ++D M   G   + VT++T+++  C E  LDEA+ L+      G    
Sbjct: 417 HCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVD 476

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y +L++   + ++  +A +L+ +M    + P  +  + MI  LC  G+  +     +
Sbjct: 477 EVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLD 536

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           ++ + G +   D   ++ ++ G C++    +A +    M++K
Sbjct: 537 ELLESGLVP--DEITYNTIIHGYCQEGQVEKAFQFHNKMVEK 576



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 134/259 (51%), Gaps = 2/259 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +E    +RKM E    PD + YN +I   C+ G M  A  LM  MG   L  D +T  +M
Sbjct: 389 DEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTM 448

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           ++  C   +L++A  L    +R G   + V+Y  L+ G  +     +AL L  EM+++  
Sbjct: 449 LRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEK-- 506

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  P+++TY S+I   C  G   +A+  LD +   G  P+ +T +T+I G+C EG +++A
Sbjct: 507 EIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKA 566

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           +Q  +K+V           ++L+  L +   L++A KLF+  ++ G   D ++ + +I  
Sbjct: 567 FQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILS 626

Query: 386 LCLGGQVLEGFCLYEDIEK 404
           LC   +  E F L E++E+
Sbjct: 627 LCKEKRFGEAFDLLEEMEE 645



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 157/316 (49%), Gaps = 7/316 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            + N C +   + E   ++ +M    ++P+++ YN +++ F +KG M   D+ ++ M   
Sbjct: 342 TLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEES 401

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PDI+TY ++I   C  G++++A  L   M R G   + V  + +L  +CR   ++ A
Sbjct: 402 GCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEA 461

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +LL    + G     + V+Y ++I  +       +AL + D M+     P+ +T +++I
Sbjct: 462 HDLLCSARRRGYFV--DEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMI 519

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G  ++A   +D+++  G V     Y++++    +  ++++A +  +KM+    K
Sbjct: 520 AGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFK 579

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD + C+ ++  LC  G + +   L+      G    VD+  ++ ++L LC++    EA 
Sbjct: 580 PDVVTCNTLLCGLCKEGMLEKALKLFNTWISKG--KDVDAVSYNTIILSLCKEKRFGEAF 637

Query: 434 KLARFMLKKRIWLQGP 449
            L   M +K++   GP
Sbjct: 638 DLLEEMEEKKL---GP 650



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 157/329 (47%), Gaps = 6/329 (1%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +V+E   +   V       V+ +  C++ R+A EAM +  +M    L PD + YN +I  
Sbjct: 288 NVIELMSQNSVVPDAWTYNVMISGFCKQGRIA-EAMRLREEMENLKLSPDVVTYNTLING 346

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             E G      +L++ M    + P+ +TY  M+K F   G++++     + M+  GC  +
Sbjct: 347 CFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPD 406

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V Y+ L+   C++G M+ A  L+ EM ++G     + VT  ++++  C +  + EA  +
Sbjct: 407 IVTYNTLISWHCKVGKMDEAFRLMDEMGRKG--LKMDDVTLNTMLRALCRERKLDEAHDL 464

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L      G   + V+  TLI G+       +A +L D++     + S   Y+S++  L +
Sbjct: 465 LCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQ 524

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             +  +A     ++L SG+ PD +  + +I   C  GQV + F  +  + +  F   V +
Sbjct: 525 MGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVT 584

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              + LL GLC++    +A KL    + K
Sbjct: 585 --CNTLLCGLCKEGMLEKALKLFNTWISK 611



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 137/277 (49%), Gaps = 2/277 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
            V   +E GC+  +     + +   K    +EA  ++ +M    L+ D +  N ++R  C
Sbjct: 394 TVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALC 453

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            +  +  A +L+        + D ++Y ++I G+    +   A  L+  MK      +++
Sbjct: 454 RERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSII 513

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y++++ G+C++G   +A++ L E+ + G    P+ +TY ++I  +C +G +++A    +
Sbjct: 514 TYNSMIAGLCQMGKTNQAIDKLDELLESG--LVPDEITYNTIIHGYCQEGQVEKAFQFHN 571

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +M      P+ VT +TL+ G C EG L++A +L +  ++ G       Y+++++ L + K
Sbjct: 572 KMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEK 631

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           R  EA  L  +M    + PD    + ++  L   G++
Sbjct: 632 RFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRM 668



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 122/255 (47%), Gaps = 22/255 (8%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA----DELMKGMGLIDLY 196
           K   A++A+ +  +M E ++ P  I YN++I   C+ G    A    DEL++  GL+   
Sbjct: 489 KHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLES-GLV--- 544

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD ITY ++I G+C  G++E A      M       ++V  + LL G+C+ G +E+AL+L
Sbjct: 545 PDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKL 604

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
                 +G D   + V+Y ++I   C +    EA  +L+ ME     P+  T + ++ G 
Sbjct: 605 FNTWISKGKDV--DAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGL 662

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
              G + +A + I K+   G   +        +EL + +  + +E      +     P+ 
Sbjct: 663 TDAGRMKDAEEFISKIAEKGKSENQ------FLELGKRQDARTSE------IPQEPHPNA 710

Query: 377 LACSVMIRELCLGGQ 391
           +A S  I ELC  G+
Sbjct: 711 IAYSNKINELCSQGR 725



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 119/260 (45%), Gaps = 7/260 (2%)

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKG---FCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           A ++   M  + + P ++T  +++     F ++  +  +  +F    + G   N  +++ 
Sbjct: 143 AAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNI 202

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+ G C       A+ +LG+M   G  C P+ +TY +++   C KG + EA  +L  M+ 
Sbjct: 203 LIHGSCMENRFGEAIRVLGKMRDYG--CPPDNITYNTILDGLCKKGRLNEARDLLLDMKN 260

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  PNR T + L+ G C  G L EA  +I+ +     V     Y+ ++    +  R+ E
Sbjct: 261 KGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAE 320

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A +L  +M    + PD +  + +I      G   EGF L E++E  G     +S  ++V+
Sbjct: 321 AMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGM--KPNSVTYNVM 378

Query: 420 LLGLCRKNHSVEAAKLARFM 439
           +    +K    E  K  R M
Sbjct: 379 VKWFVKKGKMDEVDKTVRKM 398



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 7/237 (2%)

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---GSMERALELLGEMEK 262
           I  +   GR   A  +F  MKR G    L+  + LL+ + R     S+  +  +  +  K
Sbjct: 131 IGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIK 190

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G   + N  ++  +I   C +    EA+ +L +M   GC P+ +T +T++ G C +G L
Sbjct: 191 IGVKINTN--SFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRL 248

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           +EA  L+  +   G   +   ++ LVV   R   LKEA  +   M  + V PD    +VM
Sbjct: 249 NEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVM 308

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           I   C  G++ E   L E++E +    S D   ++ L+ G      S E  KL   M
Sbjct: 309 ISGFCKQGRIAEAMRLREEMENLKL--SPDVVTYNTLINGCFEHGSSEEGFKLIEEM 363



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 3/173 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +  N+A+  L ++ E  L PD I YN +I  +C++G +  A +    M   
Sbjct: 518 MIAGLCQMGK-TNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEK 576

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +  PD++T  +++ G C  G LE A  LF      G   + V+Y+ ++  +C+      A
Sbjct: 577 NFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEA 636

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            +LL EME++     P+  TY +++      G MK+A   + ++   G + N+
Sbjct: 637 FDLLEEMEEK--KLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSENQ 687


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 197/435 (45%), Gaps = 27/435 (6%)

Query: 8   RILSSSVNIKNSKIFALHFTTASPAERFYT---HLQKNPN--NIEKTLATVKAKLDSTCV 62
             LSSS N  +SK  +L+F T   A   +    H+   P+  +  K L ++      + V
Sbjct: 21  HFLSSSHNTFHSK--SLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTV 78

Query: 63  IEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKE 122
           + + H+        GI   I+          + + N  C + R+    S++  +++   +
Sbjct: 79  LSLSHQ----MDSFGIPPNIYTL--------NILINSFCHLQRLGFAFSVLAKILKLGHQ 126

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
                   +++    LC + ++  E + +  KM     +P+ + Y  +I   C+ G   A
Sbjct: 127 PNIATFNTLIR---GLCVEGKIG-EVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSA 182

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L++ M   +  PD++ Y S+I   C   ++  A  LF  M   G + ++  Y++L+ 
Sbjct: 183 AIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIH 242

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            +C L   +    LL EM        PNVV +++V+   C +G + EA  ++D M   G 
Sbjct: 243 ALCNLCEWKHVTALLNEMVNS--KIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGV 300

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN VT + L+ G C+   +DEA ++ D +V  G       YS+L+    + +R+++A  
Sbjct: 301 EPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMY 360

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           LF +M    + P+ +  S ++  LC  G++ +   L+ ++   G +    S  + +LL  
Sbjct: 361 LFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVS--YCILLDY 418

Query: 423 LCRKNHSVEAAKLAR 437
           LC+     EA  L +
Sbjct: 419 LCKNRRLDEAIALLK 433



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 169/335 (50%), Gaps = 8/335 (2%)

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           ++  + NLCE   +      +L +M    + P+ +I++ V+   C++G ++ A +++  M
Sbjct: 240 LIHALCNLCEWKHVT----ALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMM 295

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + P+++TY +++ G C    +++A  +F  M   G A ++V+YS L++G C++  +
Sbjct: 296 IKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRI 355

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E+A+ L  EM ++  +  PN VTY++++   C  G +++A+ +   M   G  P+ V+  
Sbjct: 356 EKAMYLFEEMCRK--ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYC 413

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            L+   C    LDEA  L+  +           Y+ ++  + R   L+ A  LFS + + 
Sbjct: 414 ILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSK 473

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G+ P+    ++MI  LC  G + E   L+ ++++ G+  S +   ++++  G  R N ++
Sbjct: 474 GLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGY--SPNGCTYNLITRGFLRNNETL 531

Query: 431 EAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
              +L + ML +           +VE L   G ++
Sbjct: 532 RGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQ 566



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 163/332 (49%), Gaps = 4/332 (1%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           S  I ++ + ++  C   V +   I +   K R   +A  +  +M    + P    YN++
Sbjct: 181 SAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSL 240

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I   C   +      L+  M    + P+++ + +++   C  G++ +A  +  +M + G 
Sbjct: 241 IHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGV 300

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             N+V Y+AL+DG C    M+ A+++   M  +G   +P+VV+Y+++I  +C    +++A
Sbjct: 301 EPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG--FAPDVVSYSTLINGYCKIQRIEKA 358

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           + + + M      PN VT STL+ G C  G L +A  L  ++V  G +     Y  L+  
Sbjct: 359 MYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDY 418

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L + +RL EA  L   +  S + PD    +++I  +C  G++     L+ ++   G   +
Sbjct: 419 LCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPN 478

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           V +  +++++ GLC++    EA+KL   M +K
Sbjct: 479 VWT--YTIMINGLCQQGLLAEASKLFGEMKRK 508



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 4/234 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+  +AM++  +M   +L P+T+ Y+ ++   C  G +  A  L  
Sbjct: 340 VSYSTLINGYCKIQRI-EKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFH 398

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      PD ++Y  ++   C   RL++A  L K ++      ++  Y+ ++DG+CR G
Sbjct: 399 EMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAG 458

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E A +L   +  +G    PNV TYT +I   C +G++ EA  +   M+  G +PN  T
Sbjct: 459 ELEAARDLFSNLSSKG--LHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCT 516

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            + + +GF          QL+ +++A G  S+    S+++VE++    L ++ K
Sbjct: 517 YNLITRGFLRNNETLRGIQLLQEMLARG-FSADVSTSTVLVEMLSDDGLDQSVK 569



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 12/284 (4%)

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSR 105
           +E  + T  A +D  C+   +         M  + F  A    SY   S + N  C++ R
Sbjct: 300 VEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF--APDVVSY---STLINGYCKIQR 354

Query: 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165
           I++   +     E  ++E    +V    ++  LC   RL  +A+ +  +M      PD +
Sbjct: 355 IEKAMYLF---EEMCRKELIPNTVTYSTLMHGLCHVGRL-QDAIALFHEMVTRGQIPDFV 410

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            Y  ++   C+   +  A  L+K +   ++ PDI  Y  +I G C AG LE A  LF  +
Sbjct: 411 SYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNL 470

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
              G   N+  Y+ +++G+C+ G +  A +L GEM+++G   SPN  TY  + + F    
Sbjct: 471 SSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG--YSPNGCTYNLITRGFLRNN 528

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
                + +L  M A G + +  T + L++    +G LD++ + I
Sbjct: 529 ETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDG-LDQSVKQI 571



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 3/157 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+  RL +EA+ +L+ +   ++ PD  IY  VI   C  G++ AA +L   +    L+P
Sbjct: 419 LCKNRRL-DEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHP 477

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           ++ TY  MI G C  G L +A  LF  MKR G + N   Y+ +  G  R     R ++LL
Sbjct: 478 NVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLL 537

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
            EM   G   S +V T T ++++    G+ +    IL
Sbjct: 538 QEMLARG--FSADVSTSTVLVEMLSDDGLDQSVKQIL 572


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 151/299 (50%), Gaps = 5/299 (1%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           + N   K R A  A+ + R+M       +   Y  VI   C+ G  I   ++ + M  + 
Sbjct: 50  LINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMG 109

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           + P++I Y S+I G C  G+L +A  LF  M   G  AN++ Y++L+   CR G  + A 
Sbjct: 110 ICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEAT 169

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
               +M  EG    P+VVT+T++I     KG ++EA  I + M   G APN VT ++L+ 
Sbjct: 170 RTFSQMVGEG--ILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLN 227

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C+   +D A +L + +V  G       Y++L+     + + +EA  LF KM    + P
Sbjct: 228 GLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTP 287

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
                +++++ L   G++     L+ +++  G   S+D+  ++VLL GLC KN  +E A
Sbjct: 288 SITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDT--YTVLLDGLC-KNGCIEEA 343



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 136/269 (50%), Gaps = 4/269 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+++T  +++KG C  G++ DA  LF  M R G   +++ Y  L++ + +     RA+EL
Sbjct: 7   PNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVEL 66

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
              M  E   CS N  TY  VI   C  G+  + L +   M  +G  PN +  S+LI G 
Sbjct: 67  HRRMLSE--ICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGL 124

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G L EA  L D++V+ G  ++   Y+SL+    R    KEA + FS+M+  G+ PD 
Sbjct: 125 CRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDV 184

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I  L   G+V E + ++E + K G   ++ +  ++ LL GLC  +    A +L 
Sbjct: 185 VTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVT--YNSLLNGLCLHHQMDHAVRLF 242

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
             M+++ I +     + ++     SG  E
Sbjct: 243 EVMVERGIKIDVISYNTLINGYCTSGKTE 271



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 152/299 (50%), Gaps = 4/299 (1%)

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           L  EA     +M    + PD + +  +I    +KG +  A ++ + M      P+I+TY 
Sbjct: 164 LWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYN 223

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S++ G C   +++ A  LF+VM   G   ++++Y+ L++G C  G  E A+ L  +M+ E
Sbjct: 224 SLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYE 283

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
             + +P++ TYT +++     G ++ A  + + M+  G +P+  T + L+ G C  G ++
Sbjct: 284 --ELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIE 341

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           EA  +   + +     S   YS L+  + + +R + A ++F ++   G+ P+ +  ++MI
Sbjct: 342 EAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMI 401

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             LC  G++LE   L+  +E+ G     D    + ++ G  ++N   +A +  + M +K
Sbjct: 402 NGLCKEGKLLEAERLFVQMEESG--CEQDEISFNFIIRGFLQENQVQKAMEFLKRMREK 458



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 143/306 (46%), Gaps = 7/306 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A+ +  KM     + D ++Y  +I    +      A EL + M       +  TY  +I
Sbjct: 27  DALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVI 86

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
              C  G       +F+ M   G   N++ YS+L++G+CR+G +  A+ L  EM  +G  
Sbjct: 87  DSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQG-- 144

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
              NV+TY S+I   C  G+ KEA     +M   G  P+ VT +TLI     +G + EAY
Sbjct: 145 IKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAY 204

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           ++ + ++  G   +   Y+SL+  L    ++  A +LF  M+  G+K D ++ + +I   
Sbjct: 205 KIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGY 264

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           C  G+  E   L+  ++      S+ +  +++LL  L +      A +L   M   +I  
Sbjct: 265 CTSGKTEEAMTLFRKMQYEELTPSITT--YTILLKALYQNGRIRTAKELFNNM---QICG 319

Query: 447 QGPYVD 452
           Q P +D
Sbjct: 320 QSPSLD 325



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 130/270 (48%), Gaps = 2/270 (0%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           EG +  V     + +   K     EA  +   M +    P+ + YN+++   C    M  
Sbjct: 178 EGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDH 237

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L + M    +  D+I+Y ++I G+C +G+ E+A  LF+ M+      ++  Y+ LL 
Sbjct: 238 AVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLK 297

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            + + G +  A EL   M+  G   SP++ TYT ++   C  G ++EA+ +   ++++  
Sbjct: 298 ALYQNGRIRTAKELFNNMQICGQ--SPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKY 355

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+    S LI G       + A ++ D++   G V +   Y+ ++  L +  +L EAE+
Sbjct: 356 KPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAER 415

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           LF +M  SG + D ++ + +IR      QV
Sbjct: 416 LFVQMEESGCEQDEISFNFIIRGFLQENQV 445



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 126/267 (47%), Gaps = 10/267 (3%)

Query: 116 VVEAYK------EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           V EAYK      ++G   ++     + N LC   ++ + A+ +   M E  ++ D I YN
Sbjct: 200 VQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQM-DHAVRLFEVMVERGIKIDVISYN 258

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I  +C  G    A  L + M   +L P I TY  ++K     GR+  A  LF  M+  
Sbjct: 259 TLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQIC 318

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G + +L  Y+ LLDG+C+ G +E A+++   ++       P++  Y+ +I         +
Sbjct: 319 GQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLK--SIKYKPSIRIYSILIGGMFQARRWE 376

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            A+ I D +  +G  PN VT + +I G C EG L EA +L  ++   G       ++ ++
Sbjct: 377 SAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFII 436

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPD 375
              ++  ++++A +   +M      P+
Sbjct: 437 RGFLQENQVQKAMEFLKRMREKNFSPN 463



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 4/220 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + + E   E G  + V     + N  C   +   EAM + RKM   +L P    Y  +++
Sbjct: 239 VRLFEVMVERGIKIDVISYNTLINGYCTSGK-TEEAMTLFRKMQYEELTPSITTYTILLK 297

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
              + G +  A EL   M +    P + TY  ++ G C  G +E+A  +F+ +K      
Sbjct: 298 ALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKP 357

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++  YS L+ G+ +    E A+E+  E+   G    PN+VTY  +I   C +G + EA  
Sbjct: 358 SIRIYSILIGGMFQARRWESAMEIFDEIPTVG--LVPNIVTYNIMINGLCKEGKLLEAER 415

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           +  +ME  GC  + ++ + +I+GF  E  + +A + + ++
Sbjct: 416 LFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRM 455



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 2/144 (1%)

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN VT+STL+KG C EG + +A +L DK+   G       Y  L+  L +T++ + A
Sbjct: 4   GYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRA 63

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +L  +ML+     +     ++I  LC  G  ++G  ++ ++  +G   +V   ++S L+
Sbjct: 64  VELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNV--IVYSSLI 121

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
            GLCR     EA  L   M+ + I
Sbjct: 122 NGLCRVGKLREAVNLFDEMVSQGI 145



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 56/120 (46%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           IDV  + K      S+++  ++     +AR    AM +  ++P   L P+ + YN +I  
Sbjct: 344 IDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMING 403

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C++G ++ A+ L   M       D I++  +I+GF    +++ A    K M+    + N
Sbjct: 404 LCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPN 463


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 150/305 (49%), Gaps = 11/305 (3%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA  ANE   +   M E     DT  YN VI  FC+ G +  A +L++ M      P ++
Sbjct: 564 KAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVV 623

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY S+I G     RL++A  LF+  K      N+V YS+L+DG  ++G ++ A  +L E+
Sbjct: 624 TYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEEL 683

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            ++G   +PN+ T+ S++        + EAL     M+ L C PN+VT   LI G C   
Sbjct: 684 MQKG--LTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVR 741

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
             ++A+    ++   G   S   Y++++  L +   + EA  LF +  A+G  PD    +
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYN 801

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS---VLLLGLCRKNHSVEAAKLAR 437
            MI  L  G + ++ F L+E+  + G        IH+   V+LL    KN  +E A +  
Sbjct: 802 AMIEGLSNGNRAMDAFSLFEETRRRGL------PIHNKTCVVLLDTLHKNDCLEQAAIVG 855

Query: 438 FMLKK 442
            +L++
Sbjct: 856 AVLRE 860



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 174/388 (44%), Gaps = 11/388 (2%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI 106
           E TL+ +  K     VI VL R         I +F W   ++   H    YN    +   
Sbjct: 53  ENTLSALSFKPQPEFVIGVLRRL--KDVNRAIEYFRWYERRTELPHCPESYNSLLLVMAR 110

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
            +N   +  ++      G   SV     +   C KA    E   V++ M +F  RP    
Sbjct: 111 CRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSA 170

Query: 167 YNNVIRLFC--EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           Y  +I  F      DM+    L + M  +   P +  + ++I+GF   GR++ A  L   
Sbjct: 171 YTTLIGAFSAVNHSDMMLT--LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDE 228

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           MK     A++V Y+  +D   ++G ++ A +   E+E  G    P+ VTYTS+I + C  
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANG--LKPDEVTYTSMIGVLCKA 286

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             + EA+ + + +E     P     +T+I G+   G  DEAY L+++  A GS+ S   Y
Sbjct: 287 NRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAY 346

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + ++  L +  ++ EA K+F +M      P+    +++I  LC  G++   F L + ++K
Sbjct: 347 NCILTCLRKMGKVDEALKVFEEMKKDAA-PNLSTYNILIDMLCRAGKLDTAFELRDSMQK 405

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            G   +V +   ++++  LC+     EA
Sbjct: 406 AGLFPNVRT--VNIMVDRLCKSQKLDEA 431



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 161/347 (46%), Gaps = 5/347 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  + +G + SV     I     K    +EA+ V  +M + D  P+   YN +I + C
Sbjct: 330 LLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLC 388

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G +  A EL   M    L+P++ T   M+   C + +L++AC +F+ M    C  + +
Sbjct: 389 RAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEI 448

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            + +L+DG+ ++G ++ A ++  +M     DC  N + YTS+I+ F   G  ++   I  
Sbjct: 449 TFCSLIDGLGKVGRVDDAYKVYEKMLD--SDCRTNSIVYTSLIKNFFNHGRKEDGHKIYK 506

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M    C+P+   ++T +      G  ++   + +++ A   V     YS L+  L++  
Sbjct: 507 DMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAG 566

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
              E  +LF  M   G   D  A +++I   C  G+V + + L E+++  GF  +V +  
Sbjct: 567 FANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVT-- 624

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +  ++ GL + +   EA  L      KRI L       +++   K G
Sbjct: 625 YGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVG 671



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 144/298 (48%), Gaps = 6/298 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+  RL +EA+ +   + +    P T  YN +I  +   G    A  L++        P
Sbjct: 283 LCKANRL-DEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIP 341

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            +I Y  ++      G++++A  +F+ MK+   A NL  Y+ L+D +CR G ++ A EL 
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNILIDMLCRAGKLDTAFELR 400

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M+K G    PNV T   ++   C    + EA  + + M+   C P+ +T  +LI G  
Sbjct: 401 DSMQKAG--LFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLG 458

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G +D+AY++ +K++     ++   Y+SL+       R ++  K++  M+     PD  
Sbjct: 459 KVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQ 518

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             +  +  +   G+  +G  ++E+I+   F+   D+  +S+L+ GL +   + E  +L
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVP--DARSYSILIHGLIKAGFANETYEL 574



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 106/251 (42%), Gaps = 37/251 (14%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR-------- 172
           KE+GCV+  +   ++ +   K    N+A  +L +M      P  + Y +VI         
Sbjct: 579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRL 638

Query: 173 -----LFCEKG------DMIAADELMKGMGLID----------------LYPDIITYVSM 205
                LF E        +++    L+ G G +                 L P++ T+ S+
Sbjct: 639 DEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSL 698

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           +     A  + +A   F+ MK   C  N V Y  L++G+C++    +A     EM+K+G 
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG- 757

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+ ++YT++I      G + EA  + DR +A G  P+    + +I+G        +A
Sbjct: 758 -MKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDA 816

Query: 326 YQLIDKVVAGG 336
           + L ++    G
Sbjct: 817 FSLFEETRRRG 827



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 63/149 (42%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E   ++G   ++     + +   KA   NEA+   + M E    P+ + Y  +I   C
Sbjct: 679 ILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLC 738

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +      A    + M    + P  I+Y +MI G   AG + +A  LF   K +G   +  
Sbjct: 739 KVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSA 798

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEG 264
            Y+A+++G+        A  L  E  + G
Sbjct: 799 CYNAMIEGLSNGNRAMDAFSLFEETRRRG 827


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 170/348 (48%), Gaps = 44/348 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI   CE   +  ++  +L ++ EF   P+ +IY  +I   C++G++  A +L   MG  
Sbjct: 169 VIKGCCEAGEIE-KSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKF 227

Query: 194 DL-----------------------------------YPDIITYVSMIKGFCNAGRLEDA 218
            L                                   +P++ TY  ++   C  GR +DA
Sbjct: 228 GLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDA 287

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             LF  M+  G + N+V Y+ L+ G+CR      A +++ +M+ +G   +PN++TY ++I
Sbjct: 288 FKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDG--INPNLITYNTLI 345

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             FCG G + +AL +   +++ G +P+ VT + L+ GFC +G+   A +++ ++   G  
Sbjct: 346 DGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIK 405

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            S   Y+ L+    R   +++A +L S M   G+ PD    SV+I   C+ GQ+ E   L
Sbjct: 406 PSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 399 YEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +    K+     ++ +  I++ ++LG C++  S  A +L R M +K +
Sbjct: 466 F----KLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKEL 509



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 140/278 (50%), Gaps = 8/278 (2%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMP 156
           N+ C+  R K        + +  +E G   + V    +I  LC + + ANEA  V+ +M 
Sbjct: 276 NQHCKDGRTKD----AFKLFDEMRERGVSCNIVTYNTLIGGLCREMK-ANEANKVMDQMK 330

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
              + P+ I YN +I  FC  G +  A  L + +    L P ++TY  ++ GFC  G   
Sbjct: 331 SDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTS 390

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            A  + K M+  G   + + Y+ L+D   R+ +ME+A++L   ME+ G   +P+V TY+ 
Sbjct: 391 GAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELG--LTPDVHTYSV 448

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I  FC KG M EA  +   M A    PN+V  +T++ G+C EG+   A +L  ++    
Sbjct: 449 LIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKE 508

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
              +   Y  ++  L + ++ KEAE L  KM+ +G+ P
Sbjct: 509 LPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDP 546



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 144/304 (47%), Gaps = 4/304 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K  +  +   +  KM E  + P+   YN V+   C+ G    A +L   M    +  +I+
Sbjct: 245 KNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIV 304

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY ++I G C   +  +A  +   MK  G   NL+ Y+ L+DG C +G + +AL L  ++
Sbjct: 305 TYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDL 364

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           +  G   SP++VTY  ++  FC KG    A  ++  ME  G  P+++T + LI  F    
Sbjct: 365 KSRG--LSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMD 422

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           N+++A QL   +   G       YS L+       ++ EA +LF  M+A  ++P+ +  +
Sbjct: 423 NMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYN 482

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            M+   C  G       L+ ++E+     +V S  +  ++  LC++  S EA  L   M+
Sbjct: 483 TMVLGYCKEGSSYRALRLFREMEEKELPPNVAS--YRYMIEVLCKERKSKEAEGLVEKMI 540

Query: 441 KKRI 444
              I
Sbjct: 541 DTGI 544



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 145/330 (43%), Gaps = 39/330 (11%)

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
           W      +  +  D   +  VI+  CE G++  + +L+  +      P+++ Y ++I G 
Sbjct: 149 WRFFNESKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGC 208

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI------------------------- 244
           C  G +E A  LF  M + G  AN   Y+ L+ G+                         
Sbjct: 209 CKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNL 268

Query: 245 ----------CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
                     C+ G  + A +L  EM + G  C  N+VTY ++I   C +    EA  ++
Sbjct: 269 YTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSC--NIVTYNTLIGGLCREMKANEANKVM 326

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           D+M++ G  PN +T +TLI GFC  G L +A  L   + + G   S   Y+ LV    + 
Sbjct: 327 DQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKK 386

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
                A K+  +M   G+KP  +  +++I        + +   L   +E++G    V + 
Sbjct: 387 GDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHT- 445

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            +SVL+ G C K    EA++L + M+ K++
Sbjct: 446 -YSVLIHGFCIKGQMNEASRLFKLMVAKKL 474



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 109/234 (46%), Gaps = 5/234 (2%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  MI  +  +  L+ +   F  M   G       ++ LL  +    S  +      E +
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESK 156

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            +      +V ++  VI+  C  G ++++  +L  +   G +PN V  +TLI G C  G 
Sbjct: 157 IK---VDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGE 213

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +++A  L  ++   G V++   Y+ L+  L +    K+  +++ KM   GV P+    + 
Sbjct: 214 IEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNC 273

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           ++ + C  G+  + F L++++ + G   S +   ++ L+ GLCR+  + EA K+
Sbjct: 274 VMNQHCKDGRTKDAFKLFDEMRERGV--SCNIVTYNTLIGGLCREMKANEANKV 325


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 165/327 (50%), Gaps = 14/327 (4%)

Query: 138 LCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
           LC++ R + EA+ +L  M +   D  PD + Y+ VI  F ++GD+   D+++       +
Sbjct: 61  LCDENR-SQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL---DKMLDQR----I 112

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            P+++TY S+I   C A  ++ A  +   M + G   + + Y++++ G C  G  + A+ 
Sbjct: 113 SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV 172

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
            L +M  +G    P+VVTY S++   C  G   EA  I D M   G  P+  T  TL++G
Sbjct: 173 FLKKMRSDG--VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQG 230

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +  +G L E + L+D +V  G   +   +S LV    + ++++EA  +FSKM   G+ P+
Sbjct: 231 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPN 290

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +    +I  LC  G+V +    +E +   G     DS +++ L+  LC  +   +A +L
Sbjct: 291 AVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP--DSIVYNSLIHSLCIFDKWEKAEEL 348

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              ML + I L   + + I++   K G
Sbjct: 349 FLEMLDRGICLSTIFFNSIIDSHCKEG 375



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 137/278 (49%), Gaps = 3/278 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC KA+  ++AM VL  M +  + PD + YN+++  FC  G    A   +K
Sbjct: 117 VTYNSIIAALC-KAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLK 175

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD++TY S++   C  GR  +A  +F  M + G   ++  Y  LL G    G
Sbjct: 176 KMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKG 235

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           ++     LL  M + G    PN   ++ ++  +  +  ++EA+ +  +M   G  PN VT
Sbjct: 236 ALVEMHGLLDLMVRNG--IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVT 293

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
             T+I   C  G +++A    ++++  G       Y+SL+  L    + ++AE+LF +ML
Sbjct: 294 YGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEML 353

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
             G+    +  + +I   C  G+V+E   L++ + +IG
Sbjct: 354 DRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIG 391



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 3/242 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C   +   EA+  L+KM    + PD + YN+++   C+ G    A ++   M   
Sbjct: 157 IVHGFCSSGQ-PKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKR 215

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PDI TY ++++G+   G L +  GL  +M R+G   N   +S L+    +   +E A
Sbjct: 216 GLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEA 275

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +  +M ++G   +PN VTY +VI + C  G +++A+   ++M   G  P+ +  ++LI
Sbjct: 276 MLVFSKMRQQG--LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLI 333

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C+    ++A +L  +++  G   S   ++S++    +  R+ E+ KLF  M+  GVK
Sbjct: 334 HSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVK 393

Query: 374 PD 375
           PD
Sbjct: 394 PD 395



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 10/229 (4%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           EDA  +F  + R G   ++ +Y+ LL+G+C     + ALELL  M  +GGDC P+VV+Y+
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           +VI      G  KE  G LD+M     +PN VT +++I   C    +D+A +++  +V  
Sbjct: 93  TVIN-----GFFKE--GDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G +     Y+S+V     + + KEA     KM + GV+PD +  + ++  LC  G+  E 
Sbjct: 146 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEA 205

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             +++ + K G    + +  +  LL G   K   VE   L   M++  I
Sbjct: 206 RKIFDSMTKRGLKPDITT--YGTLLQGYATKGALVEMHGLLDLMVRNGI 252



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 23/203 (11%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC-----EKGDMIA 182
           +V    VI  LC+  R+  +AM    +M +  LRPD+I+YN++I   C     EK + + 
Sbjct: 291 AVTYGTVIDVLCKSGRV-EDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELF 349

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
            + L +G+ L       I + S+I   C  GR+ ++  LF +M R G   +++       
Sbjct: 350 LEMLDRGICL-----STIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIIT------ 398

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
               LG  + A +L       G    PN  TY  + +   G+G+++E   +   ME  GC
Sbjct: 399 ----LGRNDEAKDLFVAFSSNG--LVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGC 452

Query: 303 APNRVTISTLIKGFCVEGNLDEA 325
             +   ++ +++     G +  A
Sbjct: 453 TVDSGMLNFIVRELLQRGEITRA 475


>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 199/415 (47%), Gaps = 12/415 (2%)

Query: 40  QKNPN-NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN 98
           ++NP+ ++E  L++  + + +  V +VL RC  + +    RFF+WA     +  S   Y+
Sbjct: 61  RRNPHHDLEVGLSSFSSNVSTDLVEQVLKRC-KNIAFSAHRFFLWAKRIPGFEPSDDSYH 119

Query: 99  RACEMSRIKQNPSIIID-VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157
              ++       +I+ D ++E  +    V++ ++   +F    +A L  +A+    +M E
Sbjct: 120 IVVDILGGSGQFAILWDFLIEIRETRSSVITHELFWHVFTAYSRADLPQDAIRAFNRMGE 179

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           F +R      + ++   C++  +  A +    +  +   P + TY  + +G+   G   +
Sbjct: 180 FGIRAGVDDLDKLLYTLCKRKHVAHAQQFFDKVKSV-FNPSVKTYSILTRGWGVVGDSNN 238

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  +F  M+  GC  +++AY++LL+ +C+ G  + A ++  EM+  G D  P+  TY+  
Sbjct: 239 AQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVD--PDADTYSIF 296

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I+  C +  +     +L+R +     PN  T + +IK  C + N++EAYQ++D+++  G 
Sbjct: 297 IRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGV 356

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
                 Y+++         +  A  L  +M      PD    +++++ L   G+      
Sbjct: 357 TPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANE 416

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA-KLARFMLKKRIWLQGPYV 451
           ++E + K GF  SV +  ++V++ G C+K   +E A K    M+ + I    PY+
Sbjct: 417 VWESMGKRGFYPSVST--YAVMIHGFCKKKWKLEEACKYFEMMIDEGI---PPYI 466



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A+ ++++M      PD   YN V++L    G    A+E+ + MG    YP + TY  M
Sbjct: 377 NSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVM 436

Query: 206 IKGFCNA-GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           I GFC    +LE+AC  F++M   G    +     L D +  +G  ++ + +LG+  K  
Sbjct: 437 IHGFCKKKWKLEEACKYFEMMIDEGIPPYIATVELLRDRLLGIGFKDQ-VAILGDKMKRS 495

Query: 265 GDCS 268
             CS
Sbjct: 496 TSCS 499


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 169/344 (49%), Gaps = 11/344 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+K    +  ++  A      VV+  ++  I   C    L N A+ +L +M    +
Sbjct: 270 CDAGRVKDARQLFDEMASAPD----VVTYGIL--IHGHCALGELEN-AVKLLDEMVAGGV 322

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+  +Y +V+ L C+KG +  A  +++ M    +  D   Y +++ GFCN G L  A  
Sbjct: 323 EPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARR 382

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F  M+R G A + V Y+ +++G+CR   +E A +LL EM     D   + VTYT +I  
Sbjct: 383 WFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDV--DEVTYTVLIDG 440

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +C +G M EA  + + M   G  PN VT + L  G C +G++  A +L+ ++   G   +
Sbjct: 441 YCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELN 500

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+SL+  L +   L++A +  + M  + +KPD    + +I  LC  G +     L +
Sbjct: 501 ACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQ 560

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           ++   G   ++ +  ++VL+ G C         KL  +ML+K I
Sbjct: 561 EMLDKGIKPTIVT--YNVLMNGFCMSGRVEGGKKLLDWMLEKNI 602



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 159/329 (48%), Gaps = 7/329 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC    L  EA  +L++M    L  D + Y  +I  +C++G M  A ++  
Sbjct: 397 VTYTTMINGLCRAVEL-EEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHN 455

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P+++TY ++  G C  G ++ A  L   M   G   N   Y++L++G+C+ G
Sbjct: 456 AMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAG 515

Query: 249 SMERALELLGEMEKEGGDC-SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
            +E+A+  + +M+     C  P+V TYT++I   C  G +  A  +L  M   G  P  V
Sbjct: 516 YLEQAMRTMADMDTA---CLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIV 572

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + L+ GFC+ G ++   +L+D ++      +   Y+SL+ +      +K   +++  M
Sbjct: 573 TYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGM 632

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
            +  V P+    +++I+  C    + E    ++++ + GF  +  S  +S L+  L +K 
Sbjct: 633 RSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATS--YSALIRLLNKKK 690

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVE 456
             VEA +L   M K+ +  +    D  ++
Sbjct: 691 KFVEARELFHDMRKEGLTAESDVYDFYID 719



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 159/312 (50%), Gaps = 15/312 (4%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +LR++ ++ + P     N V+     +  +  A EL + +     + ++ +Y  ++K  C
Sbjct: 219 LLRRLRQYGISPSPEACNAVL----SRLPLDEAIELFQELP----HKNVCSYNILLKALC 270

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           +AGR++DA  LF  M     A ++V Y  L+ G C LG +E A++LL EM    G   PN
Sbjct: 271 DAGRVKDARQLFDEM---ASAPDVVTYGILIHGHCALGELENAVKLLDEMV--AGGVEPN 325

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
              YTSV+ + C KG + +AL +++ M       +    +T++ GFC +G+L  A +  D
Sbjct: 326 ATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFD 385

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G  + G  Y++++  L R   L+EAEKL  +M A  +  D +  +V+I   C  G
Sbjct: 386 EMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRG 445

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
           ++ E F ++  + + G   +V +  ++ L  GLC++     A +L   M  K + L    
Sbjct: 446 KMAEAFQMHNAMVQRGVTPNVVT--YTALTDGLCKQGDVQAANELLHEMSNKGLELNACT 503

Query: 451 VDKIVEHLKKSG 462
            + ++  L K+G
Sbjct: 504 YNSLINGLCKAG 515



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 121/256 (47%), Gaps = 11/256 (4%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L++A  LF+ +       N+ +Y+ LL  +C  G ++ A +L  EM       +P+VVTY
Sbjct: 244 LDEAIELFQELPH----KNVCSYNILLKALCDAGRVKDARQLFDEMAS-----APDVVTY 294

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +I   C  G ++ A+ +LD M A G  PN    ++++   C +G + +A ++++ +V 
Sbjct: 295 GILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQ 354

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
              +     Y++++        L  A + F +M   G+  DG+  + MI  LC   ++ E
Sbjct: 355 RKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEE 414

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
              L +++        VD   ++VL+ G C++    EA ++   M+++ +         +
Sbjct: 415 AEKLLQEMWARRL--DVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTAL 472

Query: 455 VEHLKKSGDEELITNL 470
            + L K GD +    L
Sbjct: 473 TDGLCKQGDVQAANEL 488


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 137/266 (51%), Gaps = 2/266 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           NEA+ V ++M    ++P    Y+ ++     +GD      L++ M  I L P+I TY   
Sbjct: 217 NEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTIC 276

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I+    A R++DA G+FK M   GC  +++ Y+ L+D +C  G +++A EL  +M     
Sbjct: 277 IRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSH 336

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             SP+ VTY +++  F   G ++      + ME  G AP+ VT + LI+  C  G++D A
Sbjct: 337 --SPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRA 394

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           + ++D +   G   +   Y++++  L++ +RL EA +L   M + GVKP   +  + I  
Sbjct: 395 FDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDY 454

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSV 411
               G   +    +E ++K G + S+
Sbjct: 455 YGKSGDPAKAIDTFETMKKRGIMPSI 480



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 4/281 (1%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I++++E  K  G   ++    +      +AR  ++A  + ++M +    PD I Y  +I 
Sbjct: 254 IMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLID 313

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C  G +  A EL   M      PD +TY++++  F   G LE     +  M+  G A 
Sbjct: 314 ALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAP 373

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++V Y+ L++ +C+ G ++RA ++L  M  +G    PN+ TY ++I        + EAL 
Sbjct: 374 DVVTYTILIEALCKSGDVDRAFDMLDVMTTKG--IFPNLHTYNTMICGLLKARRLDEALE 431

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS-GGCYSSLVVEL 351
           +L+ ME+LG  P   +    I  +   G+  +A    + +   G + S   C +SL   L
Sbjct: 432 LLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYT-L 490

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
             T R+ EAE +F+ +   G+ PD +  +++++     GQ+
Sbjct: 491 AETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQI 531



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 132/259 (50%), Gaps = 11/259 (4%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           +P+  ID  E  K+ G + S+      ++ L E  R++ EA  +   + +  L PD++ Y
Sbjct: 460 DPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRIS-EAEDIFNDLHKCGLSPDSVTY 518

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N +++ + + G +  A +L+  M      PD++   S+I     AGR++ A  +F  +K 
Sbjct: 519 NMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKN 578

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
              A  +V Y+ LL G+ + G + +ALEL G M + G  C PN +T+ S++        +
Sbjct: 579 LKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESG--CPPNTITFNSLLDCLSKNDAV 636

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL---IDKVVAGGSVSSGGCY 344
             AL +  RM  + C P+ +T +T+I G   EG +D A+     + K ++   V+     
Sbjct: 637 DLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKFLSPDYVT----L 692

Query: 345 SSLVVELVRTKRLKEAEKL 363
            +L+  +VR  R+++A K+
Sbjct: 693 CTLIPGVVRHGRVEDAIKV 711



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 139/293 (47%), Gaps = 2/293 (0%)

Query: 114  IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
            +++ E  K  G   +     ++ +   K++  N+   +  +M      P+ I +N +I  
Sbjct: 816  LELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISA 875

Query: 174  FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
              +  ++  A +L   +   D  P   TY  +I G   AGR E A  +F+ M  +GC  N
Sbjct: 876  LVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPN 935

Query: 234  LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
             V Y+ L++G  + G ++ A EL  +M KEG    P++ +YT +++  C  G + EA+  
Sbjct: 936  SVIYNILINGFGKSGEIDFACELFKKMVKEG--IRPDLKSYTILVECLCITGRIDEAVQY 993

Query: 294  LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
             + ++  G  P+ V+ + +I G      LDEA  L  ++   G       Y++L++ L  
Sbjct: 994  FEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGI 1053

Query: 354  TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
              ++  A K++ ++   G++P     + +IR   L G   + F +++ +  +G
Sbjct: 1054 AGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVG 1106



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 140/316 (44%), Gaps = 19/316 (6%)

Query: 158 FDLRPDTIIYNN------VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK---- 207
           FDL    +IY N      + +    KG +  A   ++ M  +    +  +Y  +I     
Sbjct: 154 FDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLP 213

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFCN     +A  ++K M   G   ++  YSAL+  + R G   + + LL EM+  G   
Sbjct: 214 GFCN-----EALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIG--L 266

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PN+ TYT  I+       + +A GI   M+  GC P+ +T + LI   C  G LD+A +
Sbjct: 267 RPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKE 326

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  K+ A         Y +L+ +  +   L+  ++ +++M   G  PD +  +++I  LC
Sbjct: 327 LYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALC 386

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
             G V   F + + +   G   ++ +  ++ ++ GL +     EA +L   M    +   
Sbjct: 387 KSGDVDRAFDMLDVMTTKGIFPNLHT--YNTMICGLLKARRLDEALELLENMESLGVKPT 444

Query: 448 GPYVDKIVEHLKKSGD 463
                  +++  KSGD
Sbjct: 445 AFSYVLFIDYYGKSGD 460



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 153/354 (43%), Gaps = 46/354 (12%)

Query: 131  MMKVIFNLCEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
            M+ +I  LC++ + A +A  V  K  +   + P    YN ++           A EL + 
Sbjct: 763  MLPLIKVLCKRKK-ALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFED 821

Query: 190  MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
            M     +P+  TY  ++     + R+     L+  M+  GC  N + ++ ++  + +  +
Sbjct: 822  MKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNN 881

Query: 250  MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
            + +AL+L  E+    GD SP   TY  +I      G  ++A+ I + M   GC PN V  
Sbjct: 882  LNKALDLYYELM--SGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIY 939

Query: 310  STLIKGF-----------------------------------CVEGNLDEAYQLIDKVVA 334
            + LI GF                                   C+ G +DEA Q  +++  
Sbjct: 940  NILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKL 999

Query: 335  GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
             G       Y+ ++  L +++RL EA  LFS+M   G+ PD    + +I  L + G+V  
Sbjct: 1000 TGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDV 1059

Query: 395  GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
               +YE+++ +G   SV +  ++ L+ G     HS+   K   F + K++ + G
Sbjct: 1060 AVKMYEELQLVGLEPSVFT--YNALIRG-----HSLSGNKDQAFSVFKKMMVVG 1106



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 134/295 (45%), Gaps = 5/295 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KAR  +EA+ +L  M    ++P    Y   I  + + GD   A +  + M    + P I 
Sbjct: 422 KARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIA 481

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
              + +      GR+ +A  +F  + + G + + V Y+ L+    + G +++A +LL EM
Sbjct: 482 ACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEM 541

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G  C P+V+   S+I      G +  A  +  R++ L  AP  VT + L+ G   EG
Sbjct: 542 ISKG--CEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEG 599

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            + +A +L   +   G   +   ++SL+  L +   +  A K+F +M      PD L  +
Sbjct: 600 KILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYN 659

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +I  L   G++   F  +  ++K  FLS  D      L+ G+ R     +A K+
Sbjct: 660 TIIYGLIREGRIDYAFWFFHQMKK--FLSP-DYVTLCTLIPGVVRHGRVEDAIKV 711



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 120/245 (48%), Gaps = 2/245 (0%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + Y  +I   C+ GD+  A +++  M    ++P++ TY +MI G   A RL++A  L
Sbjct: 373 PDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALEL 432

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            + M+  G      +Y   +D   + G   +A++    M+K G    P++    + +   
Sbjct: 433 LENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRG--IMPSIAACNASLYTL 490

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
              G + EA  I + +   G +P+ VT + L+K +   G +D+A QL+ ++++ G     
Sbjct: 491 AETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDV 550

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
              +SL+  L +  R+  A K+F ++    + P  +  ++++  L   G++L+   L+  
Sbjct: 551 MIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGS 610

Query: 402 IEKIG 406
           + + G
Sbjct: 611 MTESG 615



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 137/295 (46%), Gaps = 3/295 (1%)

Query: 82   IWAALQSSYRH-SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140
            ++  ++S+  H ++F YN   +     +  + + D+    +  GC  +     +I +   
Sbjct: 818  LFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALV 877

Query: 141  KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
            K+   N+A+ +  ++   D  P    Y  +I    + G    A ++ + M      P+ +
Sbjct: 878  KSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSV 937

Query: 201  TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
             Y  +I GF  +G ++ AC LFK M + G   +L +Y+ L++ +C  G ++ A++   E+
Sbjct: 938  IYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEEL 997

Query: 261  EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            +  G D  P+ V+Y  +I        + EAL +   M+  G +P+  T + LI    + G
Sbjct: 998  KLTGLD--PDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAG 1055

Query: 321  NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
             +D A ++ +++   G   S   Y++L+     +    +A  +F KM+  G  P+
Sbjct: 1056 KVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPN 1110



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 2/197 (1%)

Query: 116  VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
            + E   + GC  +  +  ++ N   K+   + A  + +KM +  +RPD   Y  ++   C
Sbjct: 923  IFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLC 982

Query: 176  EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
              G +  A +  + + L  L PD ++Y  +I G   + RL++A  LF  MK  G + +L 
Sbjct: 983  ITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLY 1042

Query: 236  AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
             Y+AL+  +   G ++ A+++  E++  G    P+V TY ++I+     G   +A  +  
Sbjct: 1043 TYNALILHLGIAGKVDVAVKMYEELQLVG--LEPSVFTYNALIRGHSLSGNKDQAFSVFK 1100

Query: 296  RMEALGCAPNRVTISTL 312
            +M  +GC+PN  T + L
Sbjct: 1101 KMMVVGCSPNTETFAQL 1117



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/414 (19%), Positives = 164/414 (39%), Gaps = 80/414 (19%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           Y++A ++ +  Q  S +I        +GC   V ++  + N   KA   + A  +  ++ 
Sbjct: 525 YSKAGQIDKATQLLSEMI-------SKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLK 577

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG--------------------------- 189
              L P  + YN ++    ++G ++ A EL                              
Sbjct: 578 NLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVD 637

Query: 190 --------MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
                   M +++  PD++TY ++I G    GR++ A   F  MK+   + + V    L+
Sbjct: 638 LALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKF-LSPDYVTLCTLI 696

Query: 242 DGICRLGSMERALE------------------------LLGEMEKEGGDCSPNVVTYTSV 277
            G+ R G +E A++                        +L E E E       ++   SV
Sbjct: 697 PGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSV 756

Query: 278 ----------IQIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAY 326
                     I++ C +    +A  + D+  + LG  P   + + L+ G       ++A 
Sbjct: 757 CQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKAL 816

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L + + + G+  +   Y+ L+    ++KR+ +   L+S+M + G +P+ +  +++I  L
Sbjct: 817 ELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISAL 876

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
                + +   LY ++    F  S     +  L+ GL +   S +A K+   ML
Sbjct: 877 VKSNNLNKALDLYYELMSGDF--SPTPCTYGPLIDGLLKAGRSEQAMKIFEEML 928



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/367 (18%), Positives = 143/367 (38%), Gaps = 40/367 (10%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++  +  E GC  +      + +   K    + A+ +  +M   +  PD + YN +I  
Sbjct: 605 LELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYG 664

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC-AA 232
              +G +  A      M    L PD +T  ++I G    GR+EDA  +        C   
Sbjct: 665 LIREGRIDYAFWFFHQMKKF-LSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQT 723

Query: 233 NLVAYSALLDGICRLGSMERAL-----------------------------------ELL 257
           N   +  L++ I     +E A+                                    + 
Sbjct: 724 NSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVF 783

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +  K  G   P + +Y  ++    G    ++AL + + M++ G  PN  T + L+    
Sbjct: 784 DKFTKNLG-IHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHG 842

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
               +++ Y L  ++ + G   +   ++ ++  LV++  L +A  L+ ++++    P   
Sbjct: 843 KSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPC 902

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
               +I  L   G+  +   ++E++   G     +S I+++L+ G  +      A +L +
Sbjct: 903 TYGPLIDGLLKAGRSEQAMKIFEEMLDYG--CGPNSVIYNILINGFGKSGEIDFACELFK 960

Query: 438 FMLKKRI 444
            M+K+ I
Sbjct: 961 KMVKEGI 967



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 3/186 (1%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           R+ED   +F +M++     NL  Y  +   +   G + RA   L +M + G     N  +
Sbjct: 146 RIEDMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFIL--NAYS 203

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y  +I +    G   EAL +  RM + G  P+  T S L+      G+  +   L++++ 
Sbjct: 204 YNGLIHLLL-PGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMK 262

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           + G   +   Y+  +  L R +R+ +A  +F +M   G  PD +  +V+I  LC  G++ 
Sbjct: 263 SIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLD 322

Query: 394 EGFCLY 399
           +   LY
Sbjct: 323 KAKELY 328



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 56/114 (49%)

Query: 135  IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
            I N   K+R  +EA+ +  +M    + PD   YN +I      G +  A ++ + + L+ 
Sbjct: 1012 IINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVG 1071

Query: 195  LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            L P + TY ++I+G   +G  + A  +FK M   GC+ N   ++ L +   R G
Sbjct: 1072 LEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAG 1125


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 166/380 (43%), Gaps = 35/380 (9%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           VVE  +E GC ++V     +     +A    EA    ++M ++ L PD   Y  +I   C
Sbjct: 265 VVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLC 324

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++G    A  L+  M    L P+++ Y ++I GF   G  ++A  + K M   G   N +
Sbjct: 325 KRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKI 384

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEG------------------------------- 264
            Y  L+ G+C+LG M RA  +L +M K G                               
Sbjct: 385 TYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEM 444

Query: 265 --GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
             G  SPNV TY+ +I   C  G  + A G+L++M A G  PN    + LI G+C EG+ 
Sbjct: 445 RKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSF 504

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
             A + + K+          CY+SL++ L    ++ EA + + +ML  G +P+      +
Sbjct: 505 SLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGL 564

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           I    + G + +   L   +   G   + +  I++ +L G  + ++  + +   + ML+K
Sbjct: 565 IHGYSMAGNLEKAEQLLHQMLNSGL--NPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEK 622

Query: 443 RIWLQGPYVDKIVEHLKKSG 462
            +         ++ +L  SG
Sbjct: 623 GLMPDNRLYGIVIHNLSSSG 642



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 167/345 (48%), Gaps = 20/345 (5%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCV---VSVKMMKVIFNLCEKARLANEAM----- 149
           +RA   S   + P ++  +V+ YK+ G V     V ++     L    R  N  +     
Sbjct: 161 HRALSGSDQGRRPVVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLR 220

Query: 150 -------WVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
                  W +R   E   + PD   Y+ +I  +C+  D+ +A ++++ M       +++T
Sbjct: 221 ADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVT 280

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y ++I G C AG +E+A G  K M+ +G   +   Y A+++G+C+ G  ++A  LL EM 
Sbjct: 281 YNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMS 340

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G    PNVV Y+++I  F  +G   EA  I+  M A G  PN++T   LI+G C  G 
Sbjct: 341 CAG--LMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGR 398

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +  A +++ ++   G ++    Y+ ++   +R    +EA  L ++M   G+ P+    S+
Sbjct: 399 MGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSI 458

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +I  LC  G+      L E +   G     ++ +++ L+ G CR+
Sbjct: 459 IINGLCQIGESERASGLLEQMIADGL--KPNAFVYAPLISGYCRE 501



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 173/385 (44%), Gaps = 25/385 (6%)

Query: 81  FIWAALQSSY-RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139
           F++A L S Y R  SF  + ACE  +     ++  D+        C  S+     I  L 
Sbjct: 489 FVYAPLISGYCREGSF--SLACETLKKMTRENLTPDLY-------CYNSL-----IIGLS 534

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
              ++ +EA+    +M E   +P+   Y  +I  +   G++  A++L+  M    L P+ 
Sbjct: 535 NVGKM-DEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPND 593

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
             Y  +++G+  +  LE      K M   G   +   Y  ++  +   G M+ A+ +L  
Sbjct: 594 FIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSV 653

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           +EK G    P+ + Y S+I  FC    M++A+G+LD M   G  P     + LI GFC  
Sbjct: 654 IEKNG--LVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKS 711

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
            ++  A  + + ++  G   +   Y++L+    +   +++A  L+++ML  GV PD    
Sbjct: 712 DDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVY 771

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGF--LSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           SV+       G + +   + E++   G+  +SS ++ +H     G C++    E  K   
Sbjct: 772 SVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTLVH-----GFCKRGKLQETVKFLH 826

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSG 462
            M+ K I      V+ IV  L ++G
Sbjct: 827 VMMDKDIVPSLLTVENIVIGLGEAG 851



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 163/378 (43%), Gaps = 38/378 (10%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEA 148
           Y   +  YN   E    + N      ++   ++ G   +V    +I N LC+    +  A
Sbjct: 414 YMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGE-SERA 472

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             +L +M    L+P+  +Y  +I  +C +G    A E +K M   +L PD+  Y S+I G
Sbjct: 473 SGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIG 532

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
             N G++++A   +  M   G   N   Y  L+ G    G++E+A +LL +M   G + +
Sbjct: 533 LSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPN 592

Query: 269 ---------------------------------PNVVTYTSVIQIFCGKGMMKEALGILD 295
                                            P+   Y  VI      G M+ A+ +L 
Sbjct: 593 DFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLS 652

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            +E  G  P+ +   +LI GFC   ++++A  L+D++   G      CY++L+    ++ 
Sbjct: 653 VIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSD 712

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            +  A  +F+ ++  G+ P+ +  + +I   C  G + +   LY ++   G   + D+ +
Sbjct: 713 DISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGV--APDAFV 770

Query: 416 HSVLLLGLCRKNHSVEAA 433
           +SVL  G C  +  ++ A
Sbjct: 771 YSVLAAG-CSNSGDLQQA 787



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 128/246 (52%), Gaps = 4/246 (1%)

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+  G + ++  YS L++  C++  +E A +++ EM + G  CS NVVTY ++I   C  
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETG--CSLNVVTYNTLIGGLCRA 291

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G ++EA G    ME  G  P+  T   +I G C  G  D+A  L+D++   G + +   Y
Sbjct: 292 GAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVY 351

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           S+L+   +R     EA K+  +M A+GV+P+ +    +IR LC  G++     + + + K
Sbjct: 352 STLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTK 411

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464
           IG+++  D+  +++++ G  R+++  EA  L   M K  I         I+  L + G+ 
Sbjct: 412 IGYMA--DTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGES 469

Query: 465 ELITNL 470
           E  + L
Sbjct: 470 ERASGL 475



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 133/282 (47%), Gaps = 3/282 (1%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           L S    + F+Y +  E      N   +   +++  E+G +   ++  ++ +    +   
Sbjct: 585 LNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHM 644

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
             A+ VL  + +  L PD++IY ++I  FC+  DM  A  L+  M    + P I  Y ++
Sbjct: 645 QAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNAL 704

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GFC +  +  A  +F  +   G   N V Y+ L+DG C+ G +  A++L  EM  EG 
Sbjct: 705 IDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEG- 763

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             +P+   Y+ +       G +++AL I + M A G A    + +TL+ GFC  G L E 
Sbjct: 764 -VAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIIS-SFNTLVHGFCKRGKLQET 821

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            + +  ++    V S     ++V+ L    +L EA  +F ++
Sbjct: 822 VKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVEL 863


>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 712

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 186/385 (48%), Gaps = 29/385 (7%)

Query: 77  GIRFFIWAALQS-SYRHSSF--MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK 133
           G+RFF W   +  S++  SF  M         +    + +  + +  +  GCV   K+  
Sbjct: 87  GLRFFDWVYNKGFSHKEQSFFLMLEFLGRARNLNAARNFLFSIEK--RSNGCV---KLQD 141

Query: 134 VIFNLCEK----ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG------DMIAA 183
             FN   +    A L  E++ + + M +  + P  + +N+++ +  ++G      DM   
Sbjct: 142 RYFNSLIRSYGNAGLFQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAHDMF-- 199

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           DE+ +  G+    PD  T+ ++I GFC    ++ A  +FK M+ + C  ++V Y+ ++DG
Sbjct: 200 DEMRRTYGVT---PDSYTFNTLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTIIDG 256

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +CR G ++ A  LL  M K+     PN+V+YT++++ +C K  + EAL +   M   G  
Sbjct: 257 LCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALLVFHEMLTRGLK 316

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC-YSSLVVELVRTKRLKEAEK 362
           PN VT +TLIKG       DE    +    A  + S   C ++ L+        L  A K
Sbjct: 317 PNAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILIKAHCDAGHLDAAMK 376

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI-EKIGFLSSVD----SDIHS 417
           +F +ML   + PD  + SV+IR LCL  +  +   L+ ++ EK   L   +    +  ++
Sbjct: 377 VFQEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETLFNELFEKEVLLGKNECKPLAAAYN 436

Query: 418 VLLLGLCRKNHSVEAAKLARFMLKK 442
           ++   LC    + +A K+ R ++K+
Sbjct: 437 LMFEYLCANGKAKQAEKVFRQLMKR 461



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 98/246 (39%), Gaps = 6/246 (2%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P    YN +    C  G    A+++ + + +     D  +Y ++I G C  G+ + A  
Sbjct: 429 KPLAAAYNLMFEYLCANGKAKQAEKVFRQL-MKRGAQDPSSYRTLITGLCREGKFKAAYE 487

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L  +M R     +   Y  L+DG+ ++G    A + L  M +      P   T+ SV+  
Sbjct: 488 LLVLMLRREFVPDPETYEVLIDGLLKIGEALLAHDTLQRMLR--SSYLPVATTFHSVLAE 545

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
              +    ++ G+L  M       N    +  ++        ++A+ ++  +   G +  
Sbjct: 546 LVKRKFANDSFGLLTVMLEKRIRQNIDLSTQAVRLVFSSAQKEKAFLIVRLLYDNGYLIK 605

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
                 L+  L   ++L +A  L    L      D   C+ +I  LC   +  E F LY 
Sbjct: 606 ---MEELLDFLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTIIEGLCKHKRHSEAFSLYN 662

Query: 401 DIEKIG 406
           ++ ++G
Sbjct: 663 ELVELG 668


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 178/366 (48%), Gaps = 12/366 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPE--FDLRPDTIIYNNVIR 172
           V+    + GC+ +V    ++   LC++ R + EA+ +L+ MP+   D  PD + Y  VI 
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENR-SQEALELLQMMPDDGGDCPPDVVSYTTVIN 207

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            F ++GD+  A      M    + P+++TY S+I   C A  ++ A  +   M ++G   
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMP 267

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y++++ G C  G  + A+  L +M  +G    P+VVTY S++   C  G   EA  
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG--VEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D M   G  P   T  TL++G+  +G L E + L+D +V  G   +   +S L+    
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  ++ +A  +FSKM   G+ PD +    +I  LC  G+V +    +E +  I    S  
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM--IDERLSPG 443

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG----DEELIT 468
           + +++ L+  LC  +   +A +L   ML + I L   + + I++   K G     E+L  
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD 503

Query: 469 NLPKIG 474
            + +IG
Sbjct: 504 LMVRIG 509



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 151/293 (51%), Gaps = 4/293 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+  L+KM    + PD + YN+++   C+ G    A ++   M    L P+I TY +++
Sbjct: 287 EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +G+   G L +  GL  +M R+G   N   +S L+    + G +++A+ +  +M ++G  
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG-- 404

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            +P+ VTY +VI I C  G +++A+   ++M     +P  +  ++LI   C+    D+A 
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +LI +++  G       ++S++    +  R+ E+EKLF  M+  GVKP+ +  S +I   
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGY 524

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           CL G++ E   L   +  +G     D   ++ L+ G C+ +   +A  L R M
Sbjct: 525 CLAGKMDEATKLLASMVSVGM--KPDCVTYNTLINGYCKISRMEDALVLFREM 575



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 126/248 (50%), Gaps = 3/248 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGL-FKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           D I +  ++KG C   R  DA  +  + M + GC  N+ +Y+ LL G+C     + ALEL
Sbjct: 125 DAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALEL 184

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M  +GGDC P+VV+YT+VI  F  +G + +A G    M   G  PN VT +++I   
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAAL 244

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    +D+A +++  +V  G + +   Y+S+V     + + KEA     KM + GV+PD 
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + ++  LC  G+  E   +++ + K G    + +  +  LL G   K   VE   L 
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLL 362

Query: 437 RFMLKKRI 444
             M++  I
Sbjct: 363 DLMVRNGI 370



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 119/238 (50%), Gaps = 5/238 (2%)

Query: 160 LRPDTIIYNNVIRLFC-EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            R D I +  +++  C +K    A D +++ M  +   P++ +Y  ++KG C+  R ++A
Sbjct: 122 FRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEA 181

Query: 219 CGLFKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
             L ++M   G  C  ++V+Y+ +++G  + G +++A     EM   G    PNVVTY S
Sbjct: 182 LELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRG--ILPNVVTYNS 239

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   C    M +A+ +L  M   G  PN  T ++++ G+C  G   EA   + K+ + G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                  Y+SL+  L +  R  EA K+F  M   G+KP+      +++     G ++E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 2/224 (0%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           DTI +N++I   C++G +I +++L   M  I + P+IITY ++I G+C AG++++A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLL 537

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   + V Y+ L++G C++  ME AL L  EME  G   SP+++TY  ++Q   
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG--VSPDIITYNIILQGLF 595

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
                  A  +   +   G      T + ++ G C     DEA ++   +          
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 655

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            ++ ++  L++  R  EA+ LF+ + A+G+ PD    S+M   L
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 134/284 (47%), Gaps = 3/284 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    VI  LC+  R+  +AM    +M +  L P  I+YN++I   C       A EL+
Sbjct: 409 TVTYGTVIGILCKSGRV-EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M    +  D I + S+I   C  GR+ ++  LF +M R G   N++ YS L+DG C  
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLA 527

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G M+ A +LL  M   G    P+ VTY ++I  +C    M++AL +   ME+ G +P+ +
Sbjct: 528 GKMDEATKLLASMVSVG--MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + +++G         A +L   +   G+      Y+ ++  L +     EA ++F  +
Sbjct: 586 TYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
             + ++ +    ++MI  L   G+  E   L+  +   G +  V
Sbjct: 646 CLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 123/268 (45%), Gaps = 3/268 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C+ ++    +I + C++ R+  E+  +   M    ++P+ I Y+ +I  +C  G M  A 
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVI-ESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEAT 534

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L+  M  + + PD +TY ++I G+C   R+EDA  LF+ M+  G + +++ Y+ +L G+
Sbjct: 535 KLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGL 594

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            +      A EL   + + G      + TY  ++   C   +  EAL +   +       
Sbjct: 595 FQTRRTAAAKELYVGITESGTQLE--LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + +I      G  DEA  L   + A G V     YS +   L+    L+E + LF
Sbjct: 653 ETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLF 712

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQV 392
             M  +G   +    + ++R+L   G +
Sbjct: 713 LSMEENGCTANSRMLNSIVRKLLQRGDI 740



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G  + +    +I +   K  L +EA+ + + +   DL+ +T  +N +I    + G   
Sbjct: 612 ESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 671

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L   +    L PD+ TY  M +     G LE+   LF  M+ +GC AN    ++++
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIV 731

Query: 242 DGICRLGSMERA 253
             + + G + RA
Sbjct: 732 RKLLQRGDITRA 743


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 172/349 (49%), Gaps = 11/349 (3%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP-EFD-LRPDTI 165
            +PS    V+    + G  V+V  + ++     ++   ++AM +  +M   +D + PD +
Sbjct: 91  HHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCV 150

Query: 166 IYNNVIRLFCEKGDMIAAD---ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
            YN ++  FC+   +  A    E MK  G  D  P+++TY  +I  +C +G + +  GL 
Sbjct: 151 TYNTLVNGFCKAKRLAEARVLFEAMKKGG--DCRPNLVTYSVLIDCYCKSGEVGEGLGLL 208

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + M+R G  A++  YS+L+   C  G +E   EL  EM +     SPNVVTY+ ++Q   
Sbjct: 209 EEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRR--KVSPNVVTYSCLMQGLG 266

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G  +EA  +L  M A G  P+ V  + L  G C  G   +A +++D +V  G      
Sbjct: 267 RTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTL 326

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y+ +V  L +  R+ +A  +   M+  G KPD +  + +++ LC  G++ E   L++ +
Sbjct: 327 TYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLL 386

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV 451
               F    D    + L+ GLC++    +AA++   M++  + LQG  V
Sbjct: 387 LSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVE--MGLQGNIV 433



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 161/311 (51%), Gaps = 7/311 (2%)

Query: 118 EAYKEEG-CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           EA K+ G C  ++    V+ +   K+    E + +L +M    L+ D  +Y+++I  FC 
Sbjct: 173 EAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCG 232

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
           +GD+    EL   M    + P+++TY  +++G    GR  +A  + K M   G   ++VA
Sbjct: 233 EGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVA 292

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y+ L DG+C+ G    A+++L  M ++G +  P  +TY  V+   C +  M +A G+++ 
Sbjct: 293 YTVLADGLCKNGRAGDAIKVLDLMVQKGEE--PGTLTYNVVVNGLCKEDRMDDAFGVVEM 350

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS--SLVVELVRT 354
           M   G  P+ VT +TL+KG C  G + EA  L   +++         ++  +L+  L + 
Sbjct: 351 MVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKE 410

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            R+ +A ++ S M+  G++ + +  + +I       +++E   L++   + GF  S +S 
Sbjct: 411 GRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGF--SPNSM 468

Query: 415 IHSVLLLGLCR 425
            +SV++ GLC+
Sbjct: 469 TYSVMINGLCK 479



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 126/262 (48%), Gaps = 6/262 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADELMKGMGLIDLYPDIITYV 203
           EA  +L+ M    +RPD + Y  +    C+ G   D I   +LM   G     P  +TY 
Sbjct: 273 EASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGE---EPGTLTYN 329

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            ++ G C   R++DA G+ ++M + G   + V Y+ LL G+C  G +  A++L   +  E
Sbjct: 330 VVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSE 389

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
                P+V T  ++IQ  C +G + +A  I   M  +G   N VT + LI+G+     L 
Sbjct: 390 KFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLI 449

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           EA +L    V  G   +   YS ++  L + + L  A  LF KM  SG++P  +  + ++
Sbjct: 450 EALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALM 509

Query: 384 RELCLGGQVLEGFCLYEDIEKI 405
             LC    + +   L++++  +
Sbjct: 510 TSLCREDSLEQARSLFQEMRNV 531



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 158/345 (45%), Gaps = 12/345 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--G 191
           V+  LC++ R+ ++A  V+  M +   +PD + YN +++  C  G +  A +L K +   
Sbjct: 331 VVNGLCKEDRM-DDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSE 389

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
              + PD+ T  ++I+G C  GR+ DA  +   M   G   N+V Y+ L++G      + 
Sbjct: 390 KFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLI 449

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
            AL+L     + G   SPN +TY+ +I   C   M+  A G+  +M+  G  P  +  + 
Sbjct: 450 EALKLWKYAVESG--FSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNA 507

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           L+   C E +L++A  L  ++           ++ ++   ++   +K A++L S+M    
Sbjct: 508 LMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMD 567

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           + PD +  S++I      G + E   LYE +   G +  V   +   LL G   K  + +
Sbjct: 568 LVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGV--VVFDSLLKGYGLKGETEK 625

Query: 432 AAKLARFMLKKRIWLQGPYVDKIVE---HLKKSGDEELITNLPKI 473
              L   M  K + L       I+    H+ ++ D E I  LPK 
Sbjct: 626 IISLLHQMADKDVVLDSKLTSTILACLCHMSRNLDVEKI--LPKF 668



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 3/247 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P   +  ++ + F N      A  +  +M + G   N+   + +L G CR G  ++A+ L
Sbjct: 75  PRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSL 134

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-CAPNRVTISTLIKG 315
             +M++      P+ VTY +++  FC    + EA  + + M+  G C PN VT S LI  
Sbjct: 135 FSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDC 194

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +C  G + E   L++++   G  +    YSSL+        ++   +LF +ML   V P+
Sbjct: 195 YCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPN 254

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  S +++ L   G+  E   + +D+   G    V +  ++VL  GLC+   + +A K+
Sbjct: 255 VVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVA--YTVLADGLCKNGRAGDAIKV 312

Query: 436 ARFMLKK 442
              M++K
Sbjct: 313 LDLMVQK 319



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 11/185 (5%)

Query: 82  IWA-ALQSSYRHSSFMY----NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVI 135
           +W  A++S +  +S  Y    N  C+M    Q  S+   +    K+ G   +V     ++
Sbjct: 454 LWKYAVESGFSPNSMTYSVMINGLCKM----QMLSVARGLFCKMKDSGIRPTVIDYNALM 509

Query: 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
            +LC +  L  +A  + ++M   +   D + +N +I    + GD+ +A EL+  M ++DL
Sbjct: 510 TSLCREDSL-EQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDL 568

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            PD +T+  +I  F   G L++A GL++ M   G    +V + +LL G    G  E+ + 
Sbjct: 569 VPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIIS 628

Query: 256 LLGEM 260
           LL +M
Sbjct: 629 LLHQM 633


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 221/458 (48%), Gaps = 29/458 (6%)

Query: 25  HFTTA-SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIW 83
           H+TTA S  +  ++ L      IE    T+   ++  C ++++   F   S +G  F + 
Sbjct: 91  HYTTAISLVKHMFSSL-----GIEADTITLNIVINCLCRLKLVAFGF---SVLGTMFKL- 141

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKA 142
             L+ +    + + N  C    ++ N +  + + +  ++    + V    V+ N LC+  
Sbjct: 142 -GLEPTVMTLTTLINGLC----VQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTG 196

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
                  W LRKM E + +P+ ++Y+ ++   C+ G +  A  L   M    + P+++TY
Sbjct: 197 DTLAAVGW-LRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTY 255

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
             +I+G CN GR ++A  L   M + G   +L   + L+D  C+ G + +A  ++G M  
Sbjct: 256 ACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMIL 315

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    P+V TY S+I I+C +  M EA+ +   M + G  P+ V  ++LI G+C + N+
Sbjct: 316 TGE--GPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNI 373

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           ++A  L++++   G V     +++L+    +  R   A++LF  M   G  P+   C+V+
Sbjct: 374 NKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVI 433

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVEAAKLARFML 440
           +  LC    + E   L + +EK    S++D +  I+S+LL G+C       A +L   + 
Sbjct: 434 LDGLCKENLLSEAVSLAKAMEK----SNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLP 489

Query: 441 KKRIWLQGPYVDKIVEHLKKSGD----EELITNLPKIG 474
            K + +       +++ L K G     E+L+ N+ + G
Sbjct: 490 GKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENG 527



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 178/408 (43%), Gaps = 41/408 (10%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           R+K   + I  V   +   G       + ++ N   + +L      VL  M +  L P  
Sbjct: 88  RLKHYTTAISLVKHMFSSLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTV 147

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP-DIITYVSMIKGFCNAGRLEDACGLFK 223
           +    +I   C +G++  A  L   M  +  YP D+ TY  +I G C  G    A G  +
Sbjct: 148 MTLTTLINGLCVQGNVAQAVGLADHMEKM-WYPLDVYTYGVLINGLCKTGDTLAAVGWLR 206

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M+      N+V YS ++DG+C+ G +  AL L  EM  +G    PN+VTY  +IQ  C 
Sbjct: 207 KMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKG--VRPNLVTYACLIQGLCN 264

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G  KEA  +LD M  +G  P+   ++ L+  FC EG + +A  +I  ++  G       
Sbjct: 265 FGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFT 324

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+SL+       ++ EA ++F  M++ G  PD +  + +I   C    + +   L E++ 
Sbjct: 325 YNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMS 384

Query: 404 KIGFLSSVDS----------------------DIH-----------SVLLLGLCRKNHSV 430
           K+GF+  V +                      ++H           +V+L GLC++N   
Sbjct: 385 KMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLS 444

Query: 431 EAAKLARFMLKKRIWLQ----GPYVDKIVEHLKKSGDEELITNLPKIG 474
           EA  LA+ M K  + L        +D +    K +   EL ++LP  G
Sbjct: 445 EAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKG 492



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 162/334 (48%), Gaps = 6/334 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   R   EA  +L +M +  +RPD  + N ++  FC++G ++ A  ++  M L 
Sbjct: 258 LIQGLCNFGRW-KEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILT 316

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ TY S+I  +C   ++ +A  +F +M   G   ++V +++L+ G C+  ++ +A
Sbjct: 317 GEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKA 376

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + LL EM K G    P+V T+T++I  FC  G    A  +   M   G  PN  T + ++
Sbjct: 377 MHLLEEMSKMG--FVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVIL 434

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C E  L EA  L   +       +   YS L+  +    +L  A +LFS +   G++
Sbjct: 435 DGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQ 494

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            +    ++MI+ LC  G + +   L  ++E+ G L   ++  ++V + GL  K     + 
Sbjct: 495 INVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLP--NNCTYNVFVQGLLTKKEIARSI 552

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKS-GDEEL 466
           K    M  K   +     + I+ +L  + GD ++
Sbjct: 553 KYLTIMRDKGFSVDAATTEFIINYLSTNEGDTKI 586



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V +++   VI +   K  L +EA+ + + M + +L  + +IY+ ++   C  G + AA
Sbjct: 422 GQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAA 481

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            EL   +    L  ++  Y  MIKG C  G L+ A  L   M+ +GC  N   Y+  + G
Sbjct: 482 WELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQG 541

Query: 244 ICRLGSMERALELLGEMEKEG 264
           +     + R+++ L  M  +G
Sbjct: 542 LLTKKEIARSIKYLTIMRDKG 562



 Score = 41.6 bits (96), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 313 IKGFCVEG---NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           ++  C  G   N+DEA  L   +     + S   ++ L+  +VR K    A  L   M +
Sbjct: 45  MRNLCWSGKLKNIDEALDLFQGMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFS 104

Query: 370 S-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           S G++ D +  +++I  LC    V  GF +   + K+G   +V +   + L+ GLC + +
Sbjct: 105 SLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMT--LTTLINGLCVQGN 162

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             +A  LA  M K    L       ++  L K+GD
Sbjct: 163 VAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTGD 197


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 157/309 (50%), Gaps = 7/309 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K +L NEA  +  +M   ++ P+ I YN +I  FC  G ++ A  L+  M L 
Sbjct: 156 IIDGLC-KDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILK 214

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ PD+ T+  +I   C  G+  +A  +F  M + G   N+ +Y+ +++G+C+   ++ A
Sbjct: 215 NINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEA 272

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + LL EM  +  +  P+ VTY S+I   C  G +  AL +++ M   G   + VT ++L+
Sbjct: 273 MNLLREMLHK--NMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLL 330

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C   NLD+A  L  K+   G   +   Y++L+  L +  RLK A++LF  +L  G  
Sbjct: 331 DALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCC 390

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            D    +VMI  LC  G   E   +   +E  G + +  +    +++  L  K+ + +A 
Sbjct: 391 IDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVT--FEIIIRSLFEKDENDKAE 448

Query: 434 KLARFMLKK 442
           KL   M+ K
Sbjct: 449 KLLHEMIAK 457



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +  A  + G   +V    ++ N   K +  +EAM +LR+M   ++ PDT+ YN++I   C
Sbjct: 240 IFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLC 299

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G + +A  LM  M       D++TY S++   C    L+ A  LF  MK  G    + 
Sbjct: 300 KSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMY 359

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+AL+DG+C+ G ++ A EL   +  +G  C  +V TYT +I   C +GM  EAL I  
Sbjct: 360 TYTALIDGLCKGGRLKNAQELFQHLLVKG--CCIDVWTYTVMISGLCKEGMFDEALAIKS 417

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +ME  GC PN VT   +I+    +   D+A +L+ +++A G
Sbjct: 418 KMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 458



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 145/285 (50%), Gaps = 6/285 (2%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +LR + +   RP+ ++Y+ +I   C+   +  A +L   M   +++P++ITY ++I 
Sbjct: 134 AIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLIC 193

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            FC AG+L  A  L   M       ++  +S L+D +C+ G  + A ++   M + G   
Sbjct: 194 AFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG--KNAKQIFHAMVQMG--V 249

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +PNV +Y  +I   C    + EA+ +L  M      P+ VT ++LI G C  G +  A  
Sbjct: 250 NPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALN 309

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L++++   G  +    Y+SL+  L + + L +A  LF KM   G++P     + +I  LC
Sbjct: 310 LMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLC 369

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            GG++     L++ +   G    +D   ++V++ GLC++    EA
Sbjct: 370 KGGRLKNAQELFQHLLVKG--CCIDVWTYTVMISGLCKEGMFDEA 412



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 5/235 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ + A +   +   M +  + P+   YN +I   C+   +  A  L++ M   ++ P
Sbjct: 230 LCKEGKNAKQ---IFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVP 286

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D +TY S+I G C +GR+  A  L   M   G  A++V Y++LLD +C+  ++++A  L 
Sbjct: 287 DTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALF 346

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M++ G    P + TYT++I   C  G +K A  +   +   GC  +  T + +I G C
Sbjct: 347 MKMKERG--IQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLC 404

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
            EG  DEA  +  K+   G + +   +  ++  L       +AEKL  +M+A G+
Sbjct: 405 KEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 459



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 41/293 (13%)

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I  FC  G M  +  L+  +  +   P+ IT+ +++KG C  G ++        +    
Sbjct: 51  LINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQA 110

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              N V+Y  LL+G+C+ G    A++LL  +E       PNVV Y+++I   C   ++ E
Sbjct: 111 FQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRS--TRPNVVMYSAIIDGLCKDKLVNE 168

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  +   M+A    PN +T +TLI  FC+ G L  A+ L+ +++          +S L+ 
Sbjct: 169 AYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILID 228

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L   K  K A+++F  M+  GV P+  + ++MI                          
Sbjct: 229 ALC--KEGKNAKQIFHAMVQMGVNPNVYSYNIMIN------------------------- 261

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
                       GLC+     EA  L R ML K +       + +++ L KSG
Sbjct: 262 ------------GLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSG 302



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 113/237 (47%), Gaps = 45/237 (18%)

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           RH   + ++ ++ +L  + +L      + L  +M+ +G     N+VT + +I  FC  G 
Sbjct: 5   RH--TSPIIEFNKILGSLVKLKYYLTVISLSKQMDVKG--IEQNLVTLSILINCFCHLGQ 60

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG---------GS 337
           M  +  +L ++  LG  PN +T +TL+KG C++G + +     DKVVA          G+
Sbjct: 61  MAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGT 120

Query: 338 VSSGGC--------------------------YSSLVVELVRTKRLKEAEKLFSKMLASG 371
           + +G C                          YS+++  L + K + EA  L+S+M A  
Sbjct: 121 LLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDARE 180

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH--SVLLLGLCRK 426
           + P+ +  + +I   CL GQ++  F L  ++     L +++ D++  S+L+  LC++
Sbjct: 181 IFPNVITYNTLICAFCLAGQLMGAFSLLHEM----ILKNINPDVYTFSILIDALCKE 233


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 165/327 (50%), Gaps = 14/327 (4%)

Query: 138 LCEKARLANEAMWVLRKMPE--FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
           LC++ R + EA+ +L  M +   D  PD + Y+ VI  F ++GD+   D+++       +
Sbjct: 61  LCDENR-SQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL---DKMLDQR----I 112

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            P+++TY S+I   C A  ++ A  +   M + G   + + Y++++ G C  G  + A+ 
Sbjct: 113 SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV 172

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
            L +M  +G    P+VVTY S++   C  G   EA  I D M   G  P+  T  TL++G
Sbjct: 173 FLKKMRSDG--VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQG 230

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +  +G L E + L+D +V  G   +   +S LV    + ++++EA  +FSKM   G+ P+
Sbjct: 231 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPN 290

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +    +I  LC  G+V +    +E +   G     DS +++ L+  LC  +   +A +L
Sbjct: 291 AVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGL--RPDSIVYNSLIHSLCIFDKWEKAEEL 348

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              ML + I L   + + I++   K G
Sbjct: 349 FLEMLDRGICLSTIFFNSIIDSHCKEG 375



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 150/303 (49%), Gaps = 8/303 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC KA+  ++AM VL  M +  + PD + YN+++  FC  G    A   +K
Sbjct: 117 VTYNSIIAALC-KAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLK 175

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD++TY S++   C  GR  +A  +F  M + G   ++  Y  LL G    G
Sbjct: 176 KMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKG 235

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           ++     LL  M + G    PN   ++ ++  +  +  ++EA+ +  +M   G  PN VT
Sbjct: 236 ALVEMHGLLDLMVRNG--IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVT 293

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
             T+I   C  G +++A    ++++  G       Y+SL+  L    + ++AE+LF +ML
Sbjct: 294 YGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEML 353

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV-LLLGLCRKN 427
             G+    +  + +I   C  G+V+E   L++ + +IG    V  DI ++   LG  R++
Sbjct: 354 DRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIG----VKPDIITLGRFLGSARRD 409

Query: 428 HSV 430
           +S+
Sbjct: 410 YSL 412



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 10/229 (4%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           EDA  +F  + R G   ++ +Y+ LL+G+C     + ALELL  M  +GGDC P+VV+Y+
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           +VI      G  KE  G LD+M     +PN VT +++I   C    +D+A +++  +V  
Sbjct: 93  TVIN-----GFFKE--GDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G +     Y+S+V     + + KEA     KM + GV+PD +  + ++  LC  G+  E 
Sbjct: 146 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEA 205

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             +++ + K G    + +  +  LL G   K   VE   L   M++  I
Sbjct: 206 RKIFDSMTKRGLKPDITT--YGTLLQGYATKGALVEMHGLLDLMVRNGI 252



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 123/295 (41%), Gaps = 42/295 (14%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC-----EKGDMIA 182
           +V    VI  LC+  R+  +AM    +M +  LRPD+I+YN++I   C     EK + + 
Sbjct: 291 AVTYGTVIDVLCKSGRV-EDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELF 349

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
            + L +G+ L       I + S+I   C  GR+ ++  LF +M R G   +++     L 
Sbjct: 350 LEMLDRGICL-----STIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFL- 403

Query: 243 GICRLGSMERALELL-------------GEMEKE------GGDCSPN------VVTYTSV 277
                GS  R   L              G+ EKE      GG+ + N      + TY  +
Sbjct: 404 -----GSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNII 458

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +   C   +  +AL +   +  +       T + +I      G  DEA  L     + G 
Sbjct: 459 LHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGL 518

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           V +   Y  +   ++    L+E ++LF  M  +G   D    + ++REL   G++
Sbjct: 519 VPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEI 573


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 160/322 (49%), Gaps = 5/322 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + + +   E+G     K   ++ N   KAR    A+ +  KM + + + D   Y  +I  
Sbjct: 97  VQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDS 155

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C+ G    A ++   M    + PD++ Y S++ G C  GRL++A   FK M+  G +A+
Sbjct: 156 LCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISAD 215

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y++L+ G+ R G  +     L  M   G   SP+  T+T +I   C +G + EA  I
Sbjct: 216 VYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG--FSPDAFTFTILIDGLCKEGKVGEAQQI 273

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L+ M   G  P+ +T +TL+ G C+ G L++A +L + +   G   +   Y+ L+    +
Sbjct: 274 LELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCK 333

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            +++ EA +LF +M   G+KP  +  + +I  LC  G+V     L+ +++  G    + +
Sbjct: 334 DQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLST 393

Query: 414 DIHSVLLLGLCRKNHSVEAAKL 435
             + VLL GLC+  H  EA  L
Sbjct: 394 --YCVLLDGLCKNGHLEEAIDL 413



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 157/367 (42%), Gaps = 50/367 (13%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEA 148
           +SS M +  C   R+K+        +E +KE    G    V     + +   +A L  E 
Sbjct: 184 YSSLM-DGLCRFGRLKE-------ALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEV 235

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
            W L  M +    PD   +  +I   C++G +  A ++++ M      PDI+TY +++ G
Sbjct: 236 TWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNG 295

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C  G+LEDA  LF+ +   G   N+ +Y+ L++G C+   ++ A  L  EM  +G    
Sbjct: 296 LCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKG--LK 353

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALG--------CA----------------- 303
           P+ VTY ++I   C  G ++ A  +   M+  G        C                  
Sbjct: 354 PSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDL 413

Query: 304 ----------PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
                     PN    S L+ G C  G L+EA++  D++   G       Y+ L+  L  
Sbjct: 414 FQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCN 473

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
              L EA KL  +M   G  PD +  +V+I+ L    ++ E   L E++    F  S D 
Sbjct: 474 KGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNF--SPDE 531

Query: 414 DIHSVLL 420
            + S+LL
Sbjct: 532 AVTSMLL 538



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 108/239 (45%), Gaps = 5/239 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD +T  +++KG      + DA  LF  M   G   +   Y  L++G+C+      A++L
Sbjct: 75  PDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKL 134

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
               EK  G+C  +V TY  +I   C  GM  EAL +   M   G  P+ V  S+L+ G 
Sbjct: 135 ---HEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGL 191

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G L EA +   ++   G  +    Y+SL+  L R    KE     + M+  G  PD 
Sbjct: 192 CRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDA 251

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
              +++I  LC  G+V E   + E +   G     D   ++ L+ GLC      +A KL
Sbjct: 252 FTFTILIDGLCKEGKVGEAQQILELMHHKG--KEPDILTYNTLMNGLCLVGQLEDATKL 308



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 3/162 (1%)

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P+ VT++TL+KG  +E  + +A QL D++   G       Y  L+  L + ++   A
Sbjct: 72  GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLA 131

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            KL  KM     K D     ++I  LC  G   E   ++ ++   G L   D  ++S L+
Sbjct: 132 IKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILP--DVVVYSSLM 188

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            GLCR     EA +  + M  + I       + ++  L ++G
Sbjct: 189 DGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAG 230


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 165/327 (50%), Gaps = 14/327 (4%)

Query: 138 LCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
           LC++ R + EA+ +L  M +   D  PD + Y+ VI  F ++GD+   D+++       +
Sbjct: 61  LCDENR-SQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDL---DKMLDQR----I 112

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            P+++TY S+I   C A  ++ A  +   M + G   + + Y++++ G C  G  + A+ 
Sbjct: 113 SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV 172

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
            L +M  +G    P+VVTY S++   C  G   EA  I D M   G  P+  T  TL++G
Sbjct: 173 FLKKMRSDG--VEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQG 230

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +  +G L E + L+D +V  G   +   +S LV    + ++++EA  +FSKM   G+ P+
Sbjct: 231 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPN 290

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +    +I  LC  G+V +    +E +   G     DS +++ L+  LC  +   +A +L
Sbjct: 291 AVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRP--DSIVYNSLIHSLCIFDKWEKAEEL 348

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              ML + I L   + + I++   K G
Sbjct: 349 FLEMLDRGICLSTIFFNSIIDSHCKEG 375



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 136/273 (49%), Gaps = 3/273 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KA+  ++AM VL  M +  + PD + YN+++  FC  G    A   +K M   
Sbjct: 122 IIAALC-KAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSD 180

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD++TY S++   C  GR  +A  +F  M + G   ++  Y  LL G    G++   
Sbjct: 181 GVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEM 240

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL  M + G    PN   ++ ++  +  +  ++EA+ +  +M   G  PN VT  T+I
Sbjct: 241 HGLLDLMVRNG--IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVI 298

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C  G +++A    ++++  G       Y+SL+  L    + ++AE+LF +ML  G+ 
Sbjct: 299 DVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGIC 358

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
              +  + +I   C  G+V+E   L++ + +IG
Sbjct: 359 LSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIG 391



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 3/242 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C   +   EA+  L+KM    + PD + YN+++   C+ G    A ++   M   
Sbjct: 157 IVHGFCSSGQ-PKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKR 215

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PDI TY ++++G+   G L +  GL  +M R+G   N   +S L+    +   +E A
Sbjct: 216 GLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEA 275

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +  +M ++G   +PN VTY +VI + C  G +++A+   ++M   G  P+ +  ++LI
Sbjct: 276 MLVFSKMRQQG--LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLI 333

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C+    ++A +L  +++  G   S   ++S++    +  R+ E+ KLF  M+  GVK
Sbjct: 334 HSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVK 393

Query: 374 PD 375
           PD
Sbjct: 394 PD 395



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 10/229 (4%)

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           EDA  +F  + R G   ++ +Y+ LL+G+C     + ALELL  M  +GGDC P+VV+Y+
Sbjct: 34  EDARHVFDELLRRG-IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           +VI      G  KE  G LD+M     +PN VT +++I   C    +D+A +++  +V  
Sbjct: 93  TVIN-----GFFKE--GDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G +     Y+S+V     + + KEA     KM + GV+PD +  + ++  LC  G+  E 
Sbjct: 146 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEA 205

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             +++ + K G    + +  +  LL G   K   VE   L   M++  I
Sbjct: 206 RKIFDSMTKRGLKPDITT--YGTLLQGYATKGALVEMHGLLDLMVRNGI 252


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 188/392 (47%), Gaps = 8/392 (2%)

Query: 50  LATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN 109
           L ++   L+   V++VL+    + +Q  +RFF WA  Q  Y H++  Y    ++    + 
Sbjct: 174 LNSMAQDLNPDAVVKVLN--LQTDAQNALRFFQWADKQEGYDHNTDAYFTMIDILGRAKM 231

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI--IY 167
            + +  +++  + +G  ++  M+        ++    E++     M E    P  I   Y
Sbjct: 232 FTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAY 291

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N+V+    +   +  A+ L   M    +  + +TY SMI+ F    ++EDA  L   M +
Sbjct: 292 NSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQ 351

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
           +  A ++V Y+ ++  +C+   +E+A  +L +M + G  C PN+ TY ++IQ  C     
Sbjct: 352 NNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENG--CEPNIYTYNALIQGLCAVRRP 409

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           +EAL ++  ME  G  PN  T + L  G C    LD A ++ ++ +A G   +   Y++L
Sbjct: 410 EEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTL 469

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +    R  RL EA  +  +M  +   PD +  + +I+ L  G Q+ +   +++++E  G+
Sbjct: 470 LNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGY 529

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
              V+ D  ++L  GL R  +  +A+   R M
Sbjct: 530 --DVNFDTLNILARGLARVGNHKDASIFYRRM 559



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 156/335 (46%), Gaps = 9/335 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC K ++  +A  VL+KM E    P+   YN +I+  C       A EL+  M   
Sbjct: 364 VISALC-KRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQG 422

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+I TY  +  G C   RL+ A  +F      G   N V Y+ LL+G CR   +  A
Sbjct: 423 GVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEA 482

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +++L EM +   DC+P+ VTYT++IQ       + +AL + D ME  G   N  T++ L 
Sbjct: 483 MDILKEMHQ--NDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILA 540

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           +G    GN  +A     ++   G   S   Y   +  L     ++EA+ L  +M+  G  
Sbjct: 541 RGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYS 600

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    + MI+  C  G++ +   +   + + G     D+  +++L+     +  + +A 
Sbjct: 601 PNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGI--GPDTGSYNILIKEFHNQGRTQDAD 658

Query: 434 KLARFMLKKRIWLQGPYV----DKIVEHLKKSGDE 464
           +L    L++ + L    V    D++ E L +S +E
Sbjct: 659 QLYATALERGVVLNPKPVIQEPDELPEGLVRSQEE 693



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 4/264 (1%)

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           P   +++V   ++ G   ++    ++ + LC+  RL + A  +  +     L+P+ + YN
Sbjct: 409 PEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRL-DRAKEMFNEALARGLKPNRVTYN 467

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            ++  +C    +I A +++K M   D  PD +TY ++I+G     +L DA  +   M+  
Sbjct: 468 TLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENK 527

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   N    + L  G+ R+G+ + A      M+  G   S     Y   I      G M+
Sbjct: 528 GYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYS--ASDYYLAIHCLSTAGEME 585

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           EA  +L  M   G +PN  T +T+IKGFC +G LD+A  +++ ++  G     G Y+ L+
Sbjct: 586 EAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILI 645

Query: 349 VELVRTKRLKEAEKLFSKMLASGV 372
            E     R ++A++L++  L  GV
Sbjct: 646 KEFHNQGRTQDADQLYATALERGV 669



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 49/113 (43%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K+ G   S     +  +    A    EA  +L +M      P+   YN +I+ FC +G +
Sbjct: 560 KDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRL 619

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             AD ++  M    + PD  +Y  +IK F N GR +DA  L+      G   N
Sbjct: 620 DDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATALERGVVLN 672


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 177/366 (48%), Gaps = 12/366 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPE--FDLRPDTIIYNNVIR 172
           V+    + GC+ +V    ++   LC+  R + EA+ +L+ MP+   D  PD + Y  VI 
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDDNR-SQEALELLQMMPDDGGDCPPDVVSYTTVIN 207

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            F ++GD+  A      M    + P+++TY S+I   C A  ++ A  +   M ++G   
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP 267

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y++++ G C  G  + A+  L +M  +G    P+VVTY S++   C  G   EA  
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG--VEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D M   G  P   T  TL++G+  +G L E + L+D +V  G   +   +S L+    
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  ++ +A  +FSKM   G+ PD +    +I  LC  G+V +    +E  + I    S  
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE--QMIDERLSPG 443

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG----DEELIT 468
           + +++ L+  LC  +   +A +L   ML + I L   + + I++   K G     E+L  
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD 503

Query: 469 NLPKIG 474
            + +IG
Sbjct: 504 LMVRIG 509



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 155/306 (50%), Gaps = 5/306 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C   +   EA+  L+KM    + PD + YN+++   C+ G    A ++   M   
Sbjct: 275 IVHGYCSSGQ-PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+I TY ++++G+   G L +  GL  +M R+G   N   +S L+    + G +++A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +  +M ++G   +P+ VTY +VI I C  G +++A+   ++M     +P  +  ++LI
Sbjct: 394 MLVFSKMRQQG--LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLI 451

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C+    D+A +LI +++  G       ++S++    +  R+ E+EKLF  M+  GVK
Sbjct: 452 HSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 511

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  S +I   CL G++ E   L   +  +G     D   ++ L+ G C+ +   +A 
Sbjct: 512 PDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM--KPDCVTYNTLINGYCKISRMEDAL 569

Query: 434 KLARFM 439
            L R M
Sbjct: 570 VLFREM 575



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 3/248 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGL-FKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           D I +  M+KG C   R  DA  +  + M + GC  N+ +Y+ LL G+C     + ALEL
Sbjct: 125 DAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALEL 184

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M  +GGDC P+VV+YT+VI  F  +G + +A G    M   G  PN VT S++I   
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAAL 244

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    +D+A +++  +V  G + +   Y+S+V     + + KEA     KM + GV+PD 
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + ++  LC  G+  E   +++ + K G    + +  +  LL G   K   VE   L 
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLL 362

Query: 437 RFMLKKRI 444
             M++  I
Sbjct: 363 DLMVRNGI 370



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 2/224 (0%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           DTI +N++I   C++G +I +++L   M  I + PDIITY ++I G+C AG++++A  L 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   + V Y+ L++G C++  ME AL L  EME  G   SP+++TY  ++Q   
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG--VSPDIITYNIILQGLF 595

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
                  A  +   +   G      T + ++ G C     DEA ++   +          
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 655

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            ++ ++  L++  R  EA+ LF+ + A+G+ PD    S+M   L
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 119/235 (50%), Gaps = 5/235 (2%)

Query: 163 DTIIYNNVIRLFC-EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           D I +  +++  C +K    A D +++ M  +   P++ +Y  ++KG C+  R ++A  L
Sbjct: 125 DAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALEL 184

Query: 222 FKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            ++M   G  C  ++V+Y+ +++G  + G +++A     EM   G    PNVVTY+S+I 
Sbjct: 185 LQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRG--ILPNVVTYSSIIA 242

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C    M +A+ +L  M   G  PN  T ++++ G+C  G   EA   + K+ + G   
Sbjct: 243 ALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP 302

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
               Y+SL+  L +  R  EA K+F  M   G+KP+      +++     G ++E
Sbjct: 303 DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 134/284 (47%), Gaps = 3/284 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    VI  LC+  R+  +AM    +M +  L P  I+YN++I   C       A EL+
Sbjct: 409 TVTYGTVIGILCKSGRV-EDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELI 467

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M    +  D I + S+I   C  GR+ ++  LF +M R G   +++ YS L+DG C  
Sbjct: 468 LEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 527

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G M+ A +LL  M   G    P+ VTY ++I  +C    M++AL +   ME+ G +P+ +
Sbjct: 528 GKMDEATKLLASMVSVG--MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + +++G         A +L   +   G+      Y+ ++  L +     EA ++F  +
Sbjct: 586 TYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
             + ++ +    ++MI  L   G+  E   L+  +   G +  V
Sbjct: 646 CLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 123/268 (45%), Gaps = 3/268 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C+ ++    +I + C++ R+  E+  +   M    ++PD I Y+ +I  +C  G M  A 
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVI-ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 534

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L+  M  + + PD +TY ++I G+C   R+EDA  LF+ M+  G + +++ Y+ +L G+
Sbjct: 535 KLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGL 594

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            +      A EL   + + G      + TY  ++   C   +  EAL +   +       
Sbjct: 595 FQTRRTAAAKELYVGITESGTQLE--LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + +I      G  DEA  L   + A G V     YS +   L+    L+E + LF
Sbjct: 653 ETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLF 712

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQV 392
             M  +G   +    + ++R+L   G +
Sbjct: 713 LSMEENGCTANSRMLNSIVRKLLQRGDI 740



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G  + +    +I +   K  L +EA+ + + +   DL+ +T  +N +I    + G   
Sbjct: 612 ESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 671

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L   +    L PD+ TY  M +     G LE+   LF  M+ +GC AN    ++++
Sbjct: 672 EAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIV 731

Query: 242 DGICRLGSMERA 253
             + + G + RA
Sbjct: 732 RKLLQRGDITRA 743


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 157/324 (48%), Gaps = 4/324 (1%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K++G + SV  + +        +   + + +  ++ E  LRPD  +Y   I+   + GD+
Sbjct: 139 KKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDL 198

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A ELM  M    + P +  Y  +I G C   R++DA  LF  M     A N + Y+ L
Sbjct: 199 KRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTL 258

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG C++G +E A  +   M+ E  +  P ++T+ S++   C   MM+EA  +L+ ME  
Sbjct: 259 IDGYCKVGQLEEAFNIRERMKVE--NVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVY 316

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P+R T +TL  G    GN+D +  L ++ V  G        S L+  L +   +++A
Sbjct: 317 GFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKA 376

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           E++  K L +G+ P G+  + ++   C  G + + +   E +E +G     +   ++ L+
Sbjct: 377 EEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRP--NHVTYNSLV 434

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
              C   +  EA K  + M++K +
Sbjct: 435 KKFCEMKNMEEAEKCIKKMVEKGV 458



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 186/398 (46%), Gaps = 16/398 (4%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMS 104
           N+E T+ T  + L+  C  +++        +M +  F+            F Y    +  
Sbjct: 282 NVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVP---------DRFTYTTLFDGH 332

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPD 163
               N    I + E    +G  +      ++ N LC++  +  +A  VL+K  E  L P 
Sbjct: 333 LKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNM-EKAEEVLKKFLENGLAPV 391

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
            + +N ++  +C+ GD+  A   ++ M  + L P+ +TY S++K FC    +E+A    K
Sbjct: 392 GVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIK 451

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M   G   N+  Y+ L+DG  R    +R  ++L EMEK+G    PNV++Y  +I   C 
Sbjct: 452 KMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKG--LKPNVISYGCLINCLCK 509

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
              + EA  IL  M   G  PN    + LI G C+ G L +A++  D++VA   V +   
Sbjct: 510 DANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVT 569

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+ L+  L +  ++ EAE L S++   G+  D +  + +I      G V +   LYE ++
Sbjct: 570 YNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMK 629

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           K G   ++++  +  L+ G C K   V   K+ + ML+
Sbjct: 630 KSGIKPTLNT--YHRLIAG-CGKEGLVLVEKIYQEMLQ 664



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 199/428 (46%), Gaps = 76/428 (17%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARL 144
           ++S  R   FMY +A + +    +    I+++   K  G    V +  V+   LC++ R+
Sbjct: 174 VESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRM 233

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
             +A  +  +M +  + P+ I YN +I  +C+ G +  A  + + M + ++ P IIT+ S
Sbjct: 234 -KDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNS 292

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG--------------------- 243
           ++ G C A  +E+A  + + M+ +G   +   Y+ L DG                     
Sbjct: 293 LLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKG 352

Query: 244 --------------ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
                         +C+ G+ME+A E+L +  + G   +P  V + +++  +C  G + +
Sbjct: 353 VQILDYTCSILLNALCKEGNMEKAEEVLKKFLENG--LAPVGVFFNTIVNGYCQVGDINK 410

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL-- 347
           A   +++MEA+G  PN VT ++L+K FC   N++EA + I K+V  G + +   Y++L  
Sbjct: 411 AYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLID 470

Query: 348 -------------VVELVRTKRLK--------------------EAEKLFSKMLASGVKP 374
                        ++E +  K LK                    EAE +   M+  GV P
Sbjct: 471 GYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVP 530

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           +    +++I   C+ G++ + F  ++++     + ++ +  +++L+ GLC+K   +EA  
Sbjct: 531 NAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVT--YNILINGLCKKGKVMEAEN 588

Query: 435 LARFMLKK 442
           LA  + +K
Sbjct: 589 LASEITRK 596



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 149/319 (46%), Gaps = 14/319 (4%)

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE----LMKGMGLIDLYPDIITYVS 204
           ++ L  +    ++P   ++++++   C +  M++       LMK  G++   P + +   
Sbjct: 99  LYTLFSLSSTPMKP---LFSDMLLSICSESKMVSESAELYMLMKKDGVL---PSVASLNL 152

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
            ++   +  R ED   LF  +   G   +   Y   +    +LG ++RA+EL+  M++  
Sbjct: 153 FLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKR-- 210

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           G  SP V  Y  VI   C +  MK+A  + D M     APNR+T +TLI G+C  G L+E
Sbjct: 211 GGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEE 270

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A+ + +++       +   ++SL+  L R + ++EA+++  +M   G  PD    + +  
Sbjct: 271 AFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFD 330

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
                G V     L E+  + G    +     S+LL  LC++ +  +A ++ +  L+  +
Sbjct: 331 GHLKCGNVDASITLSEEAVRKGV--QILDYTCSILLNALCKEGNMEKAEEVLKKFLENGL 388

Query: 445 WLQGPYVDKIVEHLKKSGD 463
              G + + IV    + GD
Sbjct: 389 APVGVFFNTIVNGYCQVGD 407



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 151/337 (44%), Gaps = 14/337 (4%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKM 155
           Y R+C   R  Q       ++E  +++G   +V     + N LC+ A +  EA  +L  M
Sbjct: 472 YGRSCLFDRCFQ-------ILEEMEKKGLKPNVISYGCLINCLCKDANIL-EAEVILGDM 523

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
               + P+  IYN +I   C  G +  A      M   ++ P ++TY  +I G C  G++
Sbjct: 524 VHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKV 583

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
            +A  L   + R G + +++ Y++L+ G    G++++ALEL   M+K G    P + TY 
Sbjct: 584 MEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSG--IKPTLNTYH 641

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +I   CGK  +     I   M  +   P+RV  + LI  +   G++ +A  L   + A 
Sbjct: 642 RLIA-GCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQ 700

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G       Y+ L++   +  R+ + + L + M   G+ P      ++I   C        
Sbjct: 701 GIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGA 760

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           +  Y ++ + GF  SV   I   L+ GL  +  S +A
Sbjct: 761 YVWYREMFENGFTPSV--SICDNLITGLREEGRSHDA 795


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 155/310 (50%), Gaps = 12/310 (3%)

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDL--YPDIITYVSMIKGFCNAGRLEDACGLFK 223
           ++  +I   C++G    A E +      DL   P I  Y  M+ G+  A +L+ A  L++
Sbjct: 219 LFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYNIMLNGWFRARKLKHAERLWE 278

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            MK      ++V Y  L++G CR+  +E+ALE++GEM KEG    PN + Y  +I     
Sbjct: 279 EMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEG--IKPNAIVYNPIIDALAE 336

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G  KEALG+++R   L   P   T ++L+KGFC  G+++ A +++ K+++ G +     
Sbjct: 337 AGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLPIPTT 396

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+       R  ++ E   L++KM+ SG  PD L   ++++ LC   ++     +  ++ 
Sbjct: 397 YNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAVQVSMEMR 456

Query: 404 KIGFLSSVDSDI-HSVLLLGLCRKNHSVEAAKLARF--MLKKRIWLQGPYVDKIVEHLKK 460
             G+    D D+  S +L  L  K H +E A  A F  M+++ I  Q     K+   LKK
Sbjct: 457 HKGY----DMDLATSTMLTHLLCKMHKLEEA-FAEFEDMIRRGIIPQYLTFQKLNVELKK 511

Query: 461 SGDEELITNL 470
            G  E+   L
Sbjct: 512 QGMNEMARKL 521


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 139/298 (46%), Gaps = 45/298 (15%)

Query: 121 KEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           +E G   SV  + V+   LC+ +   + A  + R+MP+    PD+  Y  +I   C+ G 
Sbjct: 147 REMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGK 206

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
              A EL K M      P ++TY  ++ G C AG +++A GLF  MK+     N+  YS+
Sbjct: 207 TFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSS 266

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+DG+C+ G    A+ELL  M ++     PN+VTY+++I   C +G + EA+  LDRM+ 
Sbjct: 267 LMDGLCKNGGSLEAMELLEMMVRKRH--KPNMVTYSTLINGLCKEGKLAEAVETLDRMKL 324

Query: 300 LG-----------------------------------CAPNRVTIS-------TLIKGFC 317
            G                                    +PNRVT S        +++G C
Sbjct: 325 QGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLC 384

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
             GNL+ ++QL   +   G     G + SLV    +   L +A ++F +M+  G  PD
Sbjct: 385 TNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPD 442



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 5/247 (2%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D  T+  MI    +A     A  +   MK   C      + ++  G  R+     A+ + 
Sbjct: 49  DHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAIRVF 108

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M   G  C P   +Y SV  I   +  +K A+     M  +G   + V+++ LIK  C
Sbjct: 109 HKMNDFG--CKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALC 166

Query: 318 VE-GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
              G +D A+++  ++   G       Y +L+  L +  +  EA++LF +M   G  P  
Sbjct: 167 KNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSV 226

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  S ++  LC  G V E   L++ ++K     +V +  +S L+ GLC+   S+EA +L 
Sbjct: 227 VTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFT--YSSLMDGLCKNGGSLEAMELL 284

Query: 437 RFMLKKR 443
             M++KR
Sbjct: 285 EMMVRKR 291



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 9/190 (4%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EAM +L  M     +P+ + Y+ +I   C++G +  A E +  M L  L PD   Y  +I
Sbjct: 279 EAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKII 338

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYS-------ALLDGICRLGSMERALELLGE 259
            GFCN  + ++A      M     + N V +S        ++ G+C  G++ R+ +L   
Sbjct: 339 NGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIG 398

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M   G   S +  T+ S+++ FC KG + +A  I D M   GC P+    S ++ GF   
Sbjct: 399 MRTRG--ISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDR 456

Query: 320 GNLDEAYQLI 329
             + EA++ I
Sbjct: 457 RKVREAFESI 466



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 8/130 (6%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY-------NNVIRLFCEKGDMIAADE 185
           K+I   C   R   EA   L +M    + P+ + +       N V++  C  G++  + +
Sbjct: 336 KIINGFCN-IRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQ 394

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L  GM    +  D  T+ S++K FC  G L  A  +F  M   GC  +   +SA++ G  
Sbjct: 395 LYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFW 454

Query: 246 RLGSMERALE 255
               +  A E
Sbjct: 455 DRRKVREAFE 464


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 152/315 (48%), Gaps = 6/315 (1%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           S++  V +   ++G V ++ +   + + C K+R    A ++L +M    + PD   YN +
Sbjct: 182 SMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTL 241

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I L+C+KG    A  +   M    +  DI++Y S+I GFC  G++ +A  +F  +K    
Sbjct: 242 IALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEIK--DA 299

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             N V Y+ L+DG C+    E AL L   M  +G    P VVTY S+++  C  G +++A
Sbjct: 300 IPNHVTYTTLIDGYCKANEFEEALRLREMMVAKG--LYPGVVTYNSILRKLCSDGRIRDA 357

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             +L  M       + VT +TLI  +C  G+L+ A +   K++  G   +   Y +L+  
Sbjct: 358 NKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHG 417

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             +T  L+ A++L   ML +G  P+    S ++   C          L ++    GF  +
Sbjct: 418 FCKTSELESAKELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLN 477

Query: 411 VDSDIHSVLLLGLCR 425
           +   ++  L+  LC+
Sbjct: 478 I--SLYRALIRRLCK 490



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 143/282 (50%), Gaps = 7/282 (2%)

Query: 149 MW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           +W V ++M +  + P+  +YN +I    +  D+  A+ ++  M +  + PDI TY ++I 
Sbjct: 184 VWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIA 243

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            +C  G   +A  +   M+R G   ++V+Y++L+ G C+ G M  A+ + GE++    D 
Sbjct: 244 LYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEIK----DA 299

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PN VTYT++I  +C     +EAL + + M A G  P  VT +++++  C +G + +A +
Sbjct: 300 IPNHVTYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANK 359

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ ++      +     ++L+    +   L  A K  +KML +G+ P+      +I   C
Sbjct: 360 LLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFC 419

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
              ++     L   +   GF  S +   +S ++   C+K+++
Sbjct: 420 KTSELESAKELLFGMLDAGF--SPNYRTYSWIVDSYCKKDNT 459



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 124/249 (49%), Gaps = 5/249 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I+  C++ ++  EAM +  ++   D  P+ + Y  +I  +C+  +   A  L +
Sbjct: 271 VSYNSLIYGFCKEGKM-REAMRMFGEIK--DAIPNHVTYTTLIDGYCKANEFEEALRLRE 327

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    LYP ++TY S+++  C+ GR+ DA  L   M      A+ V  + L++  C++G
Sbjct: 328 MMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIG 387

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  AL+   +M + G   +PN  TY ++I  FC    ++ A  +L  M   G +PN  T
Sbjct: 388 DLNSALKFKTKMLEAG--LTPNSFTYKALIHGFCKTSELESAKELLFGMLDAGFSPNYRT 445

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S ++  +C + N D    L D+ ++ G   +   Y +L+  L + +R++ AEKL   M 
Sbjct: 446 YSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNISLYRALIRRLCKIERIECAEKLLYHME 505

Query: 369 ASGVKPDGL 377
             G+  D +
Sbjct: 506 GKGISGDSV 514



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 125/285 (43%), Gaps = 38/285 (13%)

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A ++ + M L +L P +     ++      G       ++K M + G   N+  Y+ L+ 
Sbjct: 149 AVQVFEQMSLCNLKPHLHACTVLMNSLLKDGITSMVWKVYKRMVQDGVVPNIYVYNCLIH 208

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG- 301
              +   +ERA  +L EME +G    P++ TY ++I ++C KG+  EAL + D+ME  G 
Sbjct: 209 ACSKSRDVERAEFILNEMEVKG--VVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREGI 266

Query: 302 --------------------------------CAPNRVTISTLIKGFCVEGNLDEAYQLI 329
                                             PN VT +TLI G+C     +EA +L 
Sbjct: 267 NLDIVSYNSLIYGFCKEGKMREAMRMFGEIKDAIPNHVTYTTLIDGYCKANEFEEALRLR 326

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           + +VA G       Y+S++ +L    R+++A KL  +M    V+ D + C+ +I   C  
Sbjct: 327 EMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKI 386

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           G +         + + G   + +S  +  L+ G C K   +E+AK
Sbjct: 387 GDLNSALKFKTKMLEAGL--TPNSFTYKALIHGFC-KTSELESAK 428


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 164/388 (42%), Gaps = 70/388 (18%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +G V S+     + +   +A L  +A+ +  +M E++++P+ + YN +I  +CE+G+M  
Sbjct: 501 KGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSK 560

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E +  M    + PD  +Y  +I G C  G+  +A      + +  C  N + Y+ LL 
Sbjct: 561 AFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLH 620

Query: 243 GICRLGSMERALELLGEMEKEGGDCS---------------------------------P 269
           G CR G +E AL +  +M   G D                                   P
Sbjct: 621 GFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKP 680

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           + V YTS+I      G  KEA GI D M   GC PN VT + +I G C  G ++EA  L 
Sbjct: 681 DDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILC 740

Query: 330 DKVVAGGSVSSG---GC--------------------------------YSSLVVELVRT 354
            K+  G SV +    GC                                Y+ L+    R 
Sbjct: 741 SKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQ 800

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            R++EA +L ++M+  GV PD +  + MI ELC    V +   L+  + + G     D  
Sbjct: 801 GRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRP--DRV 858

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            ++ L+ G C      +A +L   ML++
Sbjct: 859 AYNTLIHGCCVAGEMGKATELRNEMLRQ 886



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 159/340 (46%), Gaps = 25/340 (7%)

Query: 102 EMSRIKQNPS--IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           EM R++ +PS   +  +VE  ++ G V                    EA+ +++++ EF 
Sbjct: 322 EMLRLRFSPSEAAVSSLVEGLRKRGKV-------------------EEALNLVKRVAEFG 362

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           + P+  +YN +I   C+  +   A+ L   MG I L P+ +TY  +I  FC  G+L+ A 
Sbjct: 363 VSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTAL 422

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
                M   G   ++  Y++L++G C+ G +  A  L+ EM  +     P VVTYTS++ 
Sbjct: 423 SFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINK--KLEPTVVTYTSLMG 480

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +C KG + +AL +   M   G  P+  T +TL+ G    G + +A +L  ++       
Sbjct: 481 GYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKP 540

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+ ++        + +A +  ++M+  G+ PD  +   +I  LCL GQ  E     
Sbjct: 541 NRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFV 600

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + + K      ++   ++ LL G CR+    EA  + + M
Sbjct: 601 DGLHKGN--CELNEICYTGLLHGFCREGKLEEALSVCQDM 638



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 129/259 (49%), Gaps = 3/259 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C   V    +I   C + +L + A+  L +M +  L+P    YN++I   C+ GD+ AA+
Sbjct: 399 CPNDVTYSILIDMFCRRGKL-DTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAE 457

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            LM  M    L P ++TY S++ G+C+ G++  A  L+  M   G   ++  ++ LL G+
Sbjct: 458 SLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGL 517

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            R G +  A++L  EM +   +  PN VTY  +I+ +C +G M +A   L+ M   G  P
Sbjct: 518 FRAGLIRDAVKLFTEMAE--WNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVP 575

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           +  +   LI G C+ G   EA   +D +  G    +  CY+ L+    R  +L+EA  + 
Sbjct: 576 DTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVC 635

Query: 365 SKMLASGVKPDGLACSVMI 383
             M   GV  D +   V+I
Sbjct: 636 QDMGLRGVDLDLVCYGVLI 654



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 171/388 (44%), Gaps = 22/388 (5%)

Query: 75  QMGIRFFIWAALQSSYRHSSFMY-----------------NRACEMSRIKQNPSIIIDVV 117
           ++G+RFF +  L   + HS+  +                 +    +      PS + D +
Sbjct: 85  KLGLRFFNFLGLHRGFDHSTASFCILIHALVQANLFWPASSLLQTLLLRALKPSEVFDAL 144

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCE 176
            +  E+  + S     ++     ++R   + + V + M  +  L P+    + ++    +
Sbjct: 145 FSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVK 204

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
                 A EL   M  + + PD+  Y  +I+  C    L  A  +   M+  GC  N+V 
Sbjct: 205 FRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVP 264

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y+ L+DG+C+   +  A+ +  ++   G +  P+VVTY +++   C     +  L ++D 
Sbjct: 265 YNVLIDGLCKKQKVWEAVGIKKDLA--GKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDE 322

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M  L  +P+   +S+L++G    G ++EA  L+ +V   G   +   Y++L+  L + + 
Sbjct: 323 MLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRN 382

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
             EAE LF +M   G+ P+ +  S++I   C  G++        ++  +G   SV    +
Sbjct: 383 FDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYP--Y 440

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + L+ G C+      A  L   M+ K++
Sbjct: 441 NSLINGHCKFGDISAAESLMAEMINKKL 468



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 16/232 (6%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY------PDIITYVS 204
           +L++M +  L+PD +IY ++I    + GD   A       G+ DL       P+ +TY +
Sbjct: 669 LLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEA------FGIWDLMINEGCVPNEVTYTA 722

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR-LGSMERALELLGEMEKE 263
           +I G C AG + +A  L   M+      N V Y   LD + + +G M++A+EL   + K 
Sbjct: 723 VINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILK- 781

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
                 N  TY  +I+ FC +G M+EA  ++ RM   G +P+ +T +T+I   C   ++ 
Sbjct: 782 --GLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVK 839

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +A +L + +   G       Y++L+        + +A +L ++ML  G+KP+
Sbjct: 840 KAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPN 891



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 6/193 (3%)

Query: 123 EGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK-GDM 180
           EGCV + V    VI  LC KA   NEA  +  KM   +  P+ + Y   + +  +  GDM
Sbjct: 711 EGCVPNEVTYTAVINGLC-KAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDM 769

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A EL   + L  L  +  TY  +I+GFC  GR+E+A  L   M   G + + + Y+ +
Sbjct: 770 KKAVELHNAI-LKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTM 828

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +  +CR   +++A+EL   M ++G    P+ V Y ++I   C  G M +A  + + M   
Sbjct: 829 ISELCRRNDVKKAIELWNSMTEKG--IRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQ 886

Query: 301 GCAPNRVTISTLI 313
           G  PN  T  T I
Sbjct: 887 GLKPNTETSETTI 899



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 2/176 (1%)

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M  +   P   T+S L+ G     +   A +L D ++  G       Y+ ++  L   K 
Sbjct: 183 MTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKD 242

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
           L  A+++  +M A+G   + +  +V+I  LC   +V E   + +D+   G     D   +
Sbjct: 243 LSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLA--GKELKPDVVTY 300

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
             L+ GLC+        ++   ML+ R       V  +VE L+K G  E   NL K
Sbjct: 301 CTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVK 356


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 168/327 (51%), Gaps = 5/327 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +    A  VL +M +  + PDT  YN ++   C   +M+ A+ +   M   
Sbjct: 434 IINGLCKTGKYL-RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQ 492

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD++++ ++I      G L+ A   F+ MK  G A + V Y+ L+ G CR G M  A
Sbjct: 493 GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEA 552

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L++  EM ++G  C  +VVTY +++   C + M+ EA  +   M   G  P+  T +TLI
Sbjct: 553 LKVRDEMLEQG--CXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLI 610

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+  +GN+++A  L + ++          Y++L+    +   +++  +L++ M++  + 
Sbjct: 611 NGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY 670

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ ++  ++I   C  G V E F L++++ + GF +++ +   + ++ G CR  ++V+A 
Sbjct: 671 PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIIT--CNTIVKGYCRAGNAVKAD 728

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKK 460
           +    ML K I   G   + ++    K
Sbjct: 729 EFLSNMLLKGIVPDGITYNTLINGFIK 755



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 145/287 (50%), Gaps = 2/287 (0%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E+GC + V     I N   K ++ +EA  +  +M E  + PD   +  +I  + + G+M 
Sbjct: 561 EQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMN 620

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  L + M   +L PD++TY ++I GFC    +E    L+  M       N ++Y  L+
Sbjct: 621 KAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 680

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +G C +G +  A  L  EM ++G + +  ++T  ++++ +C  G   +A   L  M   G
Sbjct: 681 NGYCNMGCVSEAFRLWDEMVEKGFEAT--IITCNTIVKGYCRAGNAVKADEFLSNMLLKG 738

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+ +T +TLI GF  E N+D A+ L++K+   G +     Y+ ++    R  R++EAE
Sbjct: 739 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAE 798

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
            +  KM+  GV PD    + +I        + E F +++++ + GF+
Sbjct: 799 LIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFV 845



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 2/254 (0%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G          + N   K    N+A+ +   M + +L+PD + YN +I  FC+  +M 
Sbjct: 596 ERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEME 655

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
             +EL   M    +YP+ I+Y  +I G+CN G + +A  L+  M   G  A ++  + ++
Sbjct: 656 KVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIV 715

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G CR G+  +A E L  M  +G    P+ +TY ++I  F  +  M  A  ++++ME  G
Sbjct: 716 KGYCRAGNAVKADEFLSNMLLKG--IVPDGITYNTLINGFIKEENMDRAFALVNKMENSG 773

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+ +T + ++ GF  +G + EA  ++ K++  G       Y+SL+   V    LKEA 
Sbjct: 774 LLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAF 833

Query: 362 KLFSKMLASGVKPD 375
           ++  +ML  G  PD
Sbjct: 834 RVHDEMLQRGFVPD 847



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 153/329 (46%), Gaps = 4/329 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + +    +G V  +     +  L  K    ++A+   R M    L PD +IY  +I  FC
Sbjct: 485 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC 544

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G M  A ++   M       D++TY +++ G C    L +A  LF  M   G   +  
Sbjct: 545 RNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFY 604

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++ L++G  + G+M +A+ L   M +   +  P+VVTY ++I  FC    M++   + +
Sbjct: 605 TFTTLINGYXKDGNMNKAVTLFEMMIQR--NLKPDVVTYNTLIDGFCKGSEMEKVNELWN 662

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M +    PN ++   LI G+C  G + EA++L D++V  G  ++    +++V    R  
Sbjct: 663 DMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAG 722

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
              +A++  S ML  G+ PDG+  + +I        +   F L   +E  G L  V +  
Sbjct: 723 NAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVIT-- 780

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           ++V+L G  R+    EA  +   M+++ +
Sbjct: 781 YNVILNGFSRQGRMQEAELIMLKMIERGV 809



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 140/275 (50%), Gaps = 8/275 (2%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S++ G    G ++ A  +++ + R G   N+   + +++ +C+   +E     L +ME++
Sbjct: 328 SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEK 387

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G    P+VVTY ++I  +C +G+++EA  ++D M   G  P   T + +I G C  G   
Sbjct: 388 G--VFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYL 445

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            A  ++D+++  G       Y+ L+VE  R   + +AE++F +M + GV PD ++ S +I
Sbjct: 446 RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI 505

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
             L   G + +    + D++  G   + D+ I+++L+ G CR     EA K+   ML++ 
Sbjct: 506 GLLSKNGCLDQALKYFRDMKNAGL--APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 563

Query: 444 IWLQGPYVDKIVEHLKK----SGDEELITNLPKIG 474
             L     + I+  L K    S  +EL T + + G
Sbjct: 564 CXLDVVTYNTILNGLCKEKMLSEADELFTEMTERG 598


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 148/286 (51%), Gaps = 4/286 (1%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTII 166
           +N S  + V      +G   +V     + N LC   ++ NEA  +  +M    L+P+ I 
Sbjct: 250 KNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKV-NEATALRDQMVNSCLKPNIIT 308

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           +N ++  FC+   +  A EL   M    + P++ TY  +I  +C    +EDA  L+++M 
Sbjct: 309 HNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIML 368

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G   ++  Y+ L+ G+CR G +E A  L+ EM+ +      +++TY  +I   C KG 
Sbjct: 369 GKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTK--HLKADLITYNILIDSLCNKGE 426

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           MK+AL +LD M   G  P+++T +T+I G+C EGNL  A  L  ++   G +++   Y+ 
Sbjct: 427 MKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNV 486

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           L+    +  +L++A  L ++ML  G+ P+ +   ++  E+   G V
Sbjct: 487 LIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFV 532



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 166/348 (47%), Gaps = 45/348 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD---MIAADELMKGM 190
           VI  LC+  +L N+A  ++  M    +  + I YN +I  +C+ G    M  AD ++K M
Sbjct: 169 VINGLCKVGKL-NKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEM 227

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + P+ +T+  +I GFC    +  A  +F  M R G   N+V Y++L++G+C  G +
Sbjct: 228 RADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKV 287

Query: 251 ERALELLGEMEKEGGDC-SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
             A  L  +M      C  PN++T+ +++  FC   M+K+A  + D M   G  PN  T 
Sbjct: 288 NEATALRDQMVNS---CLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTY 344

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           + LI  +C + N+++A+ L   ++  G       Y+ L+  L R   L+ A  L S+M  
Sbjct: 345 NILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDT 404

Query: 370 SGVKPDGLACSVMIRELCLGGQ-------------------------VLEGFC------- 397
             +K D +  +++I  LC  G+                         +++G+C       
Sbjct: 405 KHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRA 464

Query: 398 ---LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              L   +EK+G L++V +  ++VL+ G C+K+   +A  L   ML+K
Sbjct: 465 ALNLRSQMEKVGRLANVAT--YNVLIKGFCKKDKLEDANGLLNEMLEK 510



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 147/296 (49%), Gaps = 7/296 (2%)

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
           +V ++M    + P  I +N VI   C+ G +  A ++++ M +  +  ++ITY ++I G+
Sbjct: 149 FVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGY 208

Query: 210 CNA---GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           C     G++  A  + K M+  G   N V ++ L+DG C+  ++  A+++  EM ++G  
Sbjct: 209 CKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQG-- 266

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PNVVTY S+I   C  G + EA  + D+M      PN +T + L+ GFC    + +A 
Sbjct: 267 VKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAG 326

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L D +   G   +   Y+ L+    + + +++A  L+  ML  GV PD    + +I  L
Sbjct: 327 ELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGL 386

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           C  G +     L  +++        D   +++L+  LC K    +A +L   M +K
Sbjct: 387 CRKGDLEAARNLVSEMDTKHL--KADLITYNILIDSLCNKGEMKKALRLLDEMCRK 440



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 2/230 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K ++  +A  +   MP+  + P+   YN +I  +C+  +M  A  L + M    + PD+ 
Sbjct: 318 KNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVS 377

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  +I G C  G LE A  L   M      A+L+ Y+ L+D +C  G M++AL LL EM
Sbjct: 378 TYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEM 437

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            ++G    P+ +TY ++I  +C +G ++ AL +  +ME +G   N  T + LIKGFC + 
Sbjct: 438 CRKG--LKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKD 495

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            L++A  L+++++  G + +   Y  +  E++    + + E    K+  S
Sbjct: 496 KLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPDIEGHLYKVAVS 545



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 117/238 (49%), Gaps = 14/238 (5%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWV 151
           H++ + N  C+   +KQ   +  D+     ++G   +V    ++ +   K     +A  +
Sbjct: 309 HNALL-NGFCKNKMVKQAGELFDDM----PKQGITPNVTTYNILIDAYCKDENMEDAFAL 363

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
            R M    + PD   YN +I   C KGD+ AA  L+  M    L  D+ITY  +I   CN
Sbjct: 364 YRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCN 423

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
            G ++ A  L   M R G   + + Y+ ++DG C+ G++  AL L  +MEK G     NV
Sbjct: 424 KGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGR--LANV 481

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI-----KGFC--VEGNL 322
            TY  +I+ FC K  +++A G+L+ M   G  PNR+T   +      KGF   +EG+L
Sbjct: 482 ATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPDIEGHL 539


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 174/369 (47%), Gaps = 17/369 (4%)

Query: 116 VVEAYKEEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFDLR-----PDTIIYNN 169
           V+    E GC+ +V    ++   LC++ R + EA+ +L  M   D R     PD + Y  
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENR-SQEALELLHMMA--DDRGGGSPPDVVSYTT 201

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           VI  F ++GD   A      M    + PD++TY S+I   C A  ++ A  +   M ++G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              + + Y+++L G C  G  + A+  L +M  +G    P+VVTY+ ++   C  G   E
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG--VEPDVVTYSLLMDYLCKNGRCME 319

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  I D M   G  P   T  TL++G+  +G L E + L+D +V  G       +S L+ 
Sbjct: 320 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
                 ++ +A  +FSKM   G+ P+ +    +I  LC  G+V +    +E +   G   
Sbjct: 380 AYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL-- 437

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG----DEE 465
           S  + +++ L+ GLC  N    A +L   ML + I L   + + I++   K G     E+
Sbjct: 438 SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEK 497

Query: 466 LITNLPKIG 474
           L   + +IG
Sbjct: 498 LFELMVRIG 506



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 152/293 (51%), Gaps = 4/293 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+  L+KM    + PD + Y+ ++   C+ G  + A ++   M    L P+I TY +++
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +G+   G L +  GL  +M R+G   +   +S L+      G +++A+ +  +M ++G  
Sbjct: 344 QGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQG-- 401

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            +PN VTY +VI I C  G +++A+   ++M   G +P  +  ++LI G C     + A 
Sbjct: 402 LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE 461

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +LI +++  G   +   ++S++    +  R+ E+EKLF  M+  GVKP+ +  + +I   
Sbjct: 462 ELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGY 521

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           CL G++ E   L   +  +G     ++  +S L+ G C+ +   +A  L + M
Sbjct: 522 CLAGKMDEAMKLLSGMVSVGL--KPNTVTYSTLINGYCKISRMEDALVLFKEM 572



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 182/388 (46%), Gaps = 37/388 (9%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
            P   I  ++  + +G    V    ++ + LC+  R   EA  +   M +  L+P+   Y
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM-EARKIFDSMTKRGLKPEITTY 339

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
             +++ +  KG ++    L+  M    ++PD   +  +I  + N G+++ A  +F  M++
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQ 399

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-------------GDCS------ 268
            G   N V Y A++  +C+ G +E A+    +M  EG             G C+      
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 459

Query: 269 --------------PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
                          N + + S+I   C +G + E+  + + M  +G  PN +T +TLI 
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLIN 519

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G+C+ G +DEA +L+  +V+ G   +   YS+L+    +  R+++A  LF +M +SGV P
Sbjct: 520 GYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSP 579

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  +++++ L    +      LY  I + G  + ++   ++++L GLC+   + +A +
Sbjct: 580 DIITYNIILQGLFQTRRTAAAKELYVRITESG--TQIELSTYNIILHGLCKNKLTDDALQ 637

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           + + +    + L+    + +++ L K G
Sbjct: 638 MFQNLCLMDLKLEARTFNIMIDALLKVG 665



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 135/288 (46%), Gaps = 4/288 (1%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           ++ PD   Y  +I   C  G +      +  +       D I +  ++KG C   R  DA
Sbjct: 82  EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 141

Query: 219 CGL-FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EKEGGDCSPNVVTYTS 276
             +  + M   GC  N+ +Y+ LL G+C     + ALELL  M +  GG   P+VV+YT+
Sbjct: 142 MDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTT 201

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           VI  F  +G   +A      M   G  P+ VT +++I   C    +D+A ++++ +V  G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNG 261

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
            +     Y+S++     + + KEA     KM + GV+PD +  S+++  LC  G+ +E  
Sbjct: 262 VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEAR 321

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            +++ + K G    + +  +  LL G   K   VE   L   M++  I
Sbjct: 322 KIFDSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGI 367



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 146/310 (47%), Gaps = 4/310 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           +TI +N++I   C++G +I +++L + M  I + P++ITY ++I G+C AG++++A  L 
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   N V YS L++G C++  ME AL L  EME  G   SP+++TY  ++Q   
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG--VSPDIITYNIILQGLF 592

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
                  A  +  R+   G      T + ++ G C     D+A Q+   +          
Sbjct: 593 QTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEAR 652

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            ++ ++  L++  R  EA+ LF    ++G+ P+     +M   +   G + E   L+  +
Sbjct: 653 TFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSM 712

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           E  G   +VDS + + ++  L ++     A      + +K   L+       ++ L    
Sbjct: 713 EDNG--CTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGK 770

Query: 463 DEELITNLPK 472
            +E    LP+
Sbjct: 771 YQEYYRFLPE 780



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 130/266 (48%), Gaps = 20/266 (7%)

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           M   G  ++ PD+ TY  +I   C AGRL+        + + G   + +A++ LL G+C 
Sbjct: 75  MARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 134

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCA 303
                 A++++     E G C PNV +Y  +++  C +   +EAL +L  M      G  
Sbjct: 135 DKRTSDAMDIVLRRMTELG-CIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSP 193

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ V+ +T+I GF  EG+ D+AY    +++  G +     Y+S++  L + + + +A ++
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD-------IH 416
            + M+ +GV PD +  + ++   C  GQ  E          IGFL  + SD        +
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA---------IGFLKKMRSDGVEPDVVTY 304

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKK 442
           S+L+  LC+    +EA K+   M K+
Sbjct: 305 SLLMDYLCKNGRCMEARKIFDSMTKR 330


>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
          Length = 1031

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 153/327 (46%), Gaps = 20/327 (6%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            I N   K      A+ +L  M +  +  D   YN +I   C+      A  L+K M  +
Sbjct: 269 TILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREV 328

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +L PD  +Y ++I GF   G++  A  +F  M R     ++  Y+AL+DG CR G  + A
Sbjct: 329 NLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEA 388

Query: 254 LELLGEMEKEG------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
             +L EM+  G                      P+V+TY+++I   C  GM+ E   IL 
Sbjct: 389 RRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILS 448

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           RM+  G  PN V  +TL+  FC  G+  EA +    +   G V++   +++L+    R  
Sbjct: 449 RMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREG 508

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            + EAE+    M    +  D  + + +I   C  G VLE F +Y+++ + G+   + +  
Sbjct: 509 MIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICT-- 566

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +  LL GLC+  H V+A +   ++L+K
Sbjct: 567 YGSLLRGLCQGGHLVQAKEFMVYLLEK 593



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 130/256 (50%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L  D I YN+++  + + G +   + LM+ M   ++YP   +Y  ++ G+   G+L    
Sbjct: 701 LYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTL 760

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L++ M + G   + V Y  L+ G+C  G +E A++ L +M  E     P    Y ++I 
Sbjct: 761 YLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQPKHTHYIALIN 820

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G +  A  + + M+ALG  P+ V  S++++G C  G ++EA  +   ++  G V 
Sbjct: 821 AKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVP 880

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   +++L+  L +  ++ +A  L   M + G+K D +  +V+I  LC    + +   LY
Sbjct: 881 TIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLY 940

Query: 400 EDIEKIGFLSSVDSDI 415
           E+++  G L ++ + I
Sbjct: 941 EEMKSKGLLPNITTYI 956



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 168/353 (47%), Gaps = 11/353 (3%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVL 152
           S + N  C+M  I +   I+       ++ G + + V    ++F  C KA  A EA+   
Sbjct: 428 SALINGMCKMGMIHETKEIL----SRMQKSGVLPNNVLYTTLVFYFC-KAGHAKEALKYF 482

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
             +    L  +++I+N ++  F  +G +  A++  + M  + +  D+ ++  +I  +C  
Sbjct: 483 VDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQR 542

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G + +A  ++  M RHG   ++  Y +LL G+C+ G + +A E +  + ++   C+ +  
Sbjct: 543 GNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKA--CAIDEK 600

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           T  +++   C  G + EAL + ++M      P+  T + L+ GFC  G +  A  L+  +
Sbjct: 601 TLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMM 660

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML-ASGVKPDGLACSVMIRELCLGGQ 391
           +  G V     Y+ L+  LV   ++K A  +F +++   G+  D +A + M+     GGQ
Sbjct: 661 LEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQ 720

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + E   L  ++ +     S  S  +++L+ G  +K        L R M+K+ I
Sbjct: 721 INEIERLMRNMHENEVYPSSAS--YNILMHGYIKKGQLSRTLYLYRDMVKEGI 771



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 128/267 (47%), Gaps = 4/267 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           NE   ++R M E ++ P +  YN ++  + +KG +     L + M    + PD +TY  +
Sbjct: 722 NEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLL 781

Query: 206 IKGFCNAGRLEDACGLFK--VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           I G C  G +E A    +  V++  G       Y AL++  CR+G ++ A EL  +M+  
Sbjct: 782 IFGLCEYGLIEIAVKFLEKMVLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKAL 841

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G    P+ V  +S+++  C  G ++EA+ +   +   G  P   T +TL+ G C E  +D
Sbjct: 842 G--VVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKID 899

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +A+ L   + + G       Y+ L+  L   K + +A  L+ +M + G+ P+      + 
Sbjct: 900 DAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLT 959

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSS 410
             +   G + +G  L +DIE  G + S
Sbjct: 960 GAMYATGTMQDGEKLLKDIEDRGIVPS 986



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 130/297 (43%), Gaps = 37/297 (12%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           + R  ++A  +L+ M    + PD I Y+ +I   C+ G +    E++  M    + P+ +
Sbjct: 401 RPREVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNV 460

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL------------------- 241
            Y +++  FC AG  ++A   F  + R G  AN V ++ALL                   
Sbjct: 461 LYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYM 520

Query: 242 ----------------DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
                           D  C+ G++  A  +   M + G    P++ TY S+++  C  G
Sbjct: 521 SRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGW--PPDICTYGSLLRGLCQGG 578

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            + +A   +  +    CA +  T++TL+ G C  G LDEA  L +K+V    +     Y+
Sbjct: 579 HLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYT 638

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            L+    +  ++  A  L   ML  G+ PD +A + ++  L   GQV     ++++I
Sbjct: 639 ILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEI 695



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 40/306 (13%)

Query: 122 EEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+ C +  K +  +   +C+   L +EA+ +  KM   ++ PDT  Y  ++  FC++G +
Sbjct: 592 EKACAIDEKTLNTLLVGICKHGTL-DEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKI 650

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK-VMKRHGCAANLVAYSA 239
           + A  L++ M    L PD I Y  ++ G  N G+++ A  +F+ ++ + G  A+ +AY++
Sbjct: 651 VPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNS 710

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           +++G  + G +     L+  M +   +  P+  +Y  ++  +  KG +   L +   M  
Sbjct: 711 MMNGYLKGGQINEIERLMRNMHE--NEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVK 768

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  P+ VT   LI G C  G ++ A + ++K+V                       L+E
Sbjct: 769 EGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMV-----------------------LEE 805

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
                     SG++P       +I   C  G +   F L ED++ +G + S  ++  S +
Sbjct: 806 ----------SGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAE--SSI 853

Query: 420 LLGLCR 425
           + GLC+
Sbjct: 854 VRGLCK 859



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + LQ  + H   + N  C +  I        ++ E  K  G V S V    ++  LC+  
Sbjct: 806 SGLQPKHTHYIALINAKCRVGDIDG----AFELKEDMKALGVVPSEVAESSIVRGLCKCG 861

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           ++  EA+ V   +    + P    +  ++   C++  +  A  L + M    L  D++TY
Sbjct: 862 KV-EEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTY 920

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
             +I G CN   + DA  L++ MK  G   N+  Y  L   +   G+M+   +LL ++E 
Sbjct: 921 NVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIED 980

Query: 263 EG 264
            G
Sbjct: 981 RG 982


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 142/277 (51%), Gaps = 6/277 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD---MIAADELMKGM 190
           VI  LC+  +L  +A  V + +  + L P  + YN +I  +C++G    M   D L+K M
Sbjct: 191 VISGLCKTGQL-RKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEM 249

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + P+ +T+  ++ G+C       A  +F+ MK+ G AA++V YSAL+ G+C  G +
Sbjct: 250 VEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKV 309

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E  ++L+ EM+  G    PN+ T  SV+  FC KGMM +A G +D ME     PN VT +
Sbjct: 310 EEGVKLVDEMKDLG--LVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYT 367

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            L+ G+     + +A  + + +   G   +   Y+ L+    R    +    L  +M   
Sbjct: 368 ILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMK 427

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           GV+ D +  +V+I  LC+ G+V +   L +++  +G 
Sbjct: 428 GVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGL 464



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 143/271 (52%), Gaps = 4/271 (1%)

Query: 108 QNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
            N +  + V E  K++G   SV     +++ LC + ++  E + ++ +M +  L P+   
Sbjct: 272 SNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKV-EEGVKLVDEMKDLGLVPNLAT 330

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
            N+V+  FC+KG M  A+  +  M   ++ P+++TY  ++ G+    +++DA  + + M 
Sbjct: 331 LNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMS 390

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G   N   Y+ L+ G  R G       LL EM  +G     ++VTY  +I   C KG 
Sbjct: 391 GKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKG--VRADIVTYNVLIGALCVKGE 448

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +++A+ +LD M  +G  P  +T +T+I G+C +GN+  AY++  ++  G   ++   Y+ 
Sbjct: 449 VRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNV 508

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +  L R  +++E  +L ++ML  G+ P+G+
Sbjct: 509 FIKCLCRMGKMEETNELLNEMLEKGLVPNGV 539



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 142/299 (47%), Gaps = 8/299 (2%)

Query: 117 VEAYKEEGCVVSVKMMKVIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           V+A  +E     +   +V FN+     C+ +  A  A+ V  +M +  +    + Y+ ++
Sbjct: 242 VDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTA-AAVRVFEEMKQQGIAASVVTYSALV 300

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
              C +G +    +L+  M  + L P++ T  S++ GFC  G + DA G    M++    
Sbjct: 301 WGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVK 360

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            N+V Y+ L+DG  RL  M+ AL +   M  +G    PN   Y  +I  F   G  +   
Sbjct: 361 PNVVTYTILVDGYRRLDKMKDALAVKEAMSGKG--VRPNARIYNCLIAGFTRNGDWRSVS 418

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
           G+LD M   G   + VT + LI   CV+G + +A +L+D+++  G       Y++++   
Sbjct: 419 GLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGY 478

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
                +K A ++ ++M     + + +  +V I+ LC  G++ E   L  ++ + G + +
Sbjct: 479 CEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPN 537



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 5/226 (2%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           RP     N ++        +  A+   K      + PD+ T+  +I G C  G+L  A  
Sbjct: 147 RPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGD 206

Query: 221 LFKVMKRHGCAANLVAYSALLDGIC---RLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           + K ++  G A ++V Y+ ++DG C   R G M     LL EM + G   SPN VT+  +
Sbjct: 207 VAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAG--ISPNEVTFNVL 264

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +  +C       A+ + + M+  G A + VT S L+ G C EG ++E  +L+D++   G 
Sbjct: 265 VNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGL 324

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           V +    +S++    +   + +AE     M    VKP+ +  ++++
Sbjct: 325 VPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILV 370



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 2/133 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +R D + YN +I   C KG++  A +L+  M ++ L P  +TY ++I G+C  G ++ A 
Sbjct: 429 VRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAY 488

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +   M++    AN+V Y+  +  +CR+G ME   ELL EM ++G    PN VTY ++ +
Sbjct: 489 EIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKG--LVPNGVTYDTIKE 546

Query: 280 IFCGKGMMKEALG 292
               KG   +  G
Sbjct: 547 GMMEKGYTPDVRG 559



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K  +  +A+ +L +M    L P  + YN +I  +CEKG++ +A E+   M   
Sbjct: 439 LIGALCVKGEV-RKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKG 497

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
               +++TY   IK  C  G++E+   L   M   G   N V Y  + +G+   G
Sbjct: 498 KKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKEGMMEKG 552


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 151/288 (52%), Gaps = 8/288 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A+++  +M     +P+ +IYN +I   C+   +  A +L+  M    + PD++TY S+I
Sbjct: 169 DALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLI 228

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C++GR  DA  +   M +     ++  ++AL+D   + G +  A E   EM +   D
Sbjct: 229 SGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLD 288

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P++VTY+ +I   C    + EA  +   M + GC P+ VT S LI G+C    ++   
Sbjct: 289 --PDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGM 346

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L  ++   G V +   Y+ L+    R  +L  AE++F +M+  GV P+ +  +V++  L
Sbjct: 347 KLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGL 406

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEA 432
           C  G++ +   +  D++K G    +D+DI  +++++ G+C+     +A
Sbjct: 407 CDNGKIEKALVILADMQKNG----MDADIVTYNIIIRGMCKAGEVADA 450



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 190/397 (47%), Gaps = 15/397 (3%)

Query: 61  CVIEVLHRCFPSQSQMGIRF-FIWAALQSSYRHSSFMY----NRACEMSRIKQNPSIIID 115
           C   +L  CF   SQ+ +   F+   ++  +  S   +    N  C   R+     +   
Sbjct: 117 CTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQ 176

Query: 116 VVE-AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +V   YK    + +     +I  LC K++  + A+ +L +M +  + PD + YN++I   
Sbjct: 177 MVGMGYKPNVVIYNT----IIDGLC-KSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGL 231

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C  G    A  ++  M   ++YPD+ T+ ++I      GR+ +A   ++ M R     ++
Sbjct: 232 CSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDI 291

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V YS L+ G+C    ++ A E+ G M  +G  C P+VVTY+ +I  +C    ++  + + 
Sbjct: 292 VTYSLLIYGLCMYSRLDEAEEMFGFMVSKG--CFPDVVTYSILINGYCKSKKVEHGMKLF 349

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             M   G   N VT + LI+G+C  G L+ A ++  ++V  G   +   Y+ L+  L   
Sbjct: 350 CEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDN 409

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            ++++A  + + M  +G+  D +  +++IR +C  G+V + + +Y  +   G +  + + 
Sbjct: 410 GKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWT- 468

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV 451
            ++ ++LGL +K    EA  L R M +  I     YV
Sbjct: 469 -YTTMMLGLYKKGLRREADALFRKMKEDGILPNECYV 504



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 128/272 (47%), Gaps = 17/272 (6%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P I  +  ++       + +    L++ M+  G   NL   + LL+  CR   +  AL  
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           LG+M K G +  P++VT+ S++  FC    + +AL + D+M  +G  PN V  +T+I G 
Sbjct: 139 LGKMIKLGHE--PSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGL 196

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    +D A  L++++   G       Y+SL+  L  + R  +A ++ S M    + PD 
Sbjct: 197 CKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDV 256

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAK 434
              + +I      G+V E    YE++ +     S+D DI  +S+L+ GLC  +   EA +
Sbjct: 257 FTFNALIDACVKEGRVSEAEEFYEEMIR----RSLDPDIVTYSLLIYGLCMYSRLDEAEE 312

Query: 435 LARFMLKK---------RIWLQGPYVDKIVEH 457
           +  FM+ K          I + G    K VEH
Sbjct: 313 MFGFMVSKGCFPDVVTYSILINGYCKSKKVEH 344



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 12/254 (4%)

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           L + M ++ +  ++ T   ++  FC   +L  A      M + G   ++V + +LL+G C
Sbjct: 103 LWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFC 162

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           R   +  AL +  +M   G    PNVV Y ++I   C    +  AL +L+RME  G  P+
Sbjct: 163 RGDRVYDALYMFDQMVGMGY--KPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPD 220

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            VT ++LI G C  G   +A +++  +           +++L+   V+  R+ EAE+ + 
Sbjct: 221 VVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYE 280

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS----VDSDIHSVLLL 421
           +M+   + PD +  S++I  LC+  +      L E  E  GF+ S     D   +S+L+ 
Sbjct: 281 EMIRRSLDPDIVTYSLLIYGLCMYSR------LDEAEEMFGFMVSKGCFPDVVTYSILIN 334

Query: 422 GLCRKNHSVEAAKL 435
           G C+        KL
Sbjct: 335 GYCKSKKVEHGMKL 348


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 155/310 (50%), Gaps = 15/310 (4%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M    + P+TI YN++I  F ++  + AA+ +   M      PD+IT+  +I
Sbjct: 336 EAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILI 395

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C A R++D   L   M R G  AN + Y+ L+ G C+LG++  AL+LL EM   G  
Sbjct: 396 DGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSG-- 453

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----------GCAPNRVTISTLIKG 315
             PNVVT  +++   C  G +K+AL +   M+                P+  T + LI G
Sbjct: 454 VCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICG 513

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
              EG   EA +L +++   G V     Y+S++  L +  RL EA ++F  M + G  PD
Sbjct: 514 LINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPD 573

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  + +I   C  G+V +G  ++ ++ + G +++  +  +  L+ G C+  +   A  +
Sbjct: 574 VVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAIT--YRTLIHGFCQVGNINGALDI 631

Query: 436 ARFMLKKRIW 445
            + M+   ++
Sbjct: 632 FQEMISSGVY 641



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 154/313 (49%), Gaps = 10/313 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC + R++ EA+    ++     +P+ I +  ++   C +G ++ A  L+ 
Sbjct: 147 VTFSTLLHGLCVEDRVS-EALHFFHQI----CKPNVIAFTTLMNGLCREGRVVEAVALLD 201

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICRL 247
            M    L P+ ITY +++ G C  G    A  L + M+       N+V YSA++DG+ + 
Sbjct: 202 RMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKD 261

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G    A  L  EM+++G   SPN+ TY  +I  FC  G   EA  +L  M     +P+ V
Sbjct: 262 GRQTDAQNLFSEMQEKG--ISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVV 319

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S LI     EG   EA +L ++++  G + +   Y+S++    +  RL  AE++F  M
Sbjct: 320 TFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLM 379

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  PD +  S++I   C   +V +G  L  ++ + G +++  +  ++ L+ G C+  
Sbjct: 380 ATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTIT--YTTLIHGFCQLG 437

Query: 428 HSVEAAKLARFML 440
           +   A  L + M+
Sbjct: 438 NLNAALDLLQEMI 450



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 142/278 (51%), Gaps = 17/278 (6%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC   V    ++ +    A+  ++ M +L +M    L  +TI Y  +I  FC+ G++ A
Sbjct: 382 KGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNA 441

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCA 231
           A +L++ M    + P+++T  +++ G CN G+L+DA  +FKVM++           +   
Sbjct: 442 ALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVE 501

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            ++  Y+ L+ G+   G    A EL  EM   G    P+ +TY SVI   C +  + EA 
Sbjct: 502 PDVQTYNILICGLINEGKFSEAEELYEEMPHRG--LVPDTITYNSVIDGLCKQSRLDEAT 559

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            + D M + G +P+ VT +TLI G+C  G + +  ++  ++   G V++   Y +L+   
Sbjct: 560 QMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGF 619

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            +   +  A  +F +M++SGV PD    ++ IR +  G
Sbjct: 620 CQVGNINGALDIFQEMISSGVYPD----TITIRNMLTG 653



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 137/278 (49%), Gaps = 17/278 (6%)

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           V+R+  E+ D++ +  L + M +  +  +I ++  +IK FC+  +L  A   F  + + G
Sbjct: 86  VVRM--ERPDVVIS--LHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLG 141

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              +LV +S LL G+C    +  AL    ++      C PNV+ +T+++   C +G + E
Sbjct: 142 FHPSLVTFSTLLHGLCVEDRVSEALHFFHQI------CKPNVIAFTTLMNGLCREGRVVE 195

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC-YSSLV 348
           A+ +LDRM   G  PN++T  T++ G C  G+   A  L+ K+     +      YS+++
Sbjct: 196 AVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAII 255

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L +  R  +A+ LFS+M   G+ P+    + MI   C  G+  E   L  ++    F 
Sbjct: 256 DGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREM----FE 311

Query: 409 SSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             +  D+   SVL+  L ++    EA +L   ML + I
Sbjct: 312 RKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGI 349



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           RKM    +  +   +  +I+ FC    +  A      +  +  +P ++T+ +++ G C  
Sbjct: 100 RKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVE 159

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            R+ +A   F  +    C  N++A++ L++G+CR G +  A+ LL  M ++G    PN +
Sbjct: 160 DRVSEALHFFHQI----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDG--LQPNQI 213

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           TY +++   C  G    AL +L +ME +    PN V  S +I G   +G   +A  L  +
Sbjct: 214 TYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSE 273

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +   G   +   Y+ ++     + R  EA++L  +M    + PD +  SV+I  L   G+
Sbjct: 274 MQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGK 333

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             E   LY ++   G + +  +  ++ ++ G  ++N    A ++   M  K
Sbjct: 334 FFEAEELYNEMLPRGIIPNTIT--YNSMIDGFSKQNRLDAAERMFYLMATK 382



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 7/193 (3%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           +F + +K+++  +A       P  D+ PD   YN +I     +G    A+EL + M    
Sbjct: 480 MFKVMQKSKMDLDA-----SHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRG 534

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           L PD ITY S+I G C   RL++A  +F  M   G + ++V ++ L++G C++G +   L
Sbjct: 535 LVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGL 594

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           E+  EM + G     N +TY ++I  FC  G +  AL I   M + G  P+ +TI  ++ 
Sbjct: 595 EVFCEMGRRG--IVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLT 652

Query: 315 GFCVEGNLDEAYQ 327
           G   +  L  A Q
Sbjct: 653 GLWSKEELKRAVQ 665



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 100/196 (51%), Gaps = 6/196 (3%)

Query: 100 ACEMSRIKQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           A EM ++ Q   + +D    + + E  V +  ++  I  L  + + + EA  +  +MP  
Sbjct: 477 ALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNIL--ICGLINEGKFS-EAEELYEEMPHR 533

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            L PDTI YN+VI   C++  +  A ++   MG     PD++T+ ++I G+C  GR+ D 
Sbjct: 534 GLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDG 593

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             +F  M R G  AN + Y  L+ G C++G++  AL++  EM   G    P+ +T  +++
Sbjct: 594 LEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSG--VYPDTITIRNML 651

Query: 279 QIFCGKGMMKEALGIL 294
                K  +K A+  L
Sbjct: 652 TGLWSKEELKRAVQCL 667



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 7/237 (2%)

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GF     L+DA  LF  M R      ++ +  LL  + R+   +  + L  +ME     C
Sbjct: 50  GFHEIKGLDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPC 109

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             N+ ++T +I+ FC    +  AL    ++  LG  P+ VT STL+ G CVE  + EA  
Sbjct: 110 --NIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALH 167

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              ++     ++    +++L+  L R  R+ EA  L  +M+  G++P+ +    ++  +C
Sbjct: 168 FFHQICKPNVIA----FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 223

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             G  +    L   +E++  +   +  I+S ++ GL +     +A  L   M +K I
Sbjct: 224 KMGDTVSALNLLRKMEEVSRIKP-NVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGI 279


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 148/294 (50%), Gaps = 3/294 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA   L  M +    PD      ++   CE G +  A    + M  +   P++I + S+I
Sbjct: 235 EADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLI 294

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C  G ++ A  + + M R+G   N+  ++AL+DG+C+ G  E+A  L  ++ +    
Sbjct: 295 DGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVR-SDT 353

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PNV TYTS+I  +C +  +  A  +  RM+  G  PN  T +TLI G C  G+   AY
Sbjct: 354 YKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAY 413

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L++ +   G + +   Y++ +  L +  R  EA +L +K  + G++ DG+  +++I+E 
Sbjct: 414 ELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQ 473

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           C    + +    +  + K GF    D  ++++L+   CR+    E+ +L + ++
Sbjct: 474 CKQNDINQALAFFCRMNKTGF--EADMRLNNILIAAFCRQKKMKESERLFQLVV 525



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 144/336 (42%), Gaps = 12/336 (3%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C++ +L N A  +  +M E  L P+   Y  +I   C+ G    A ELM  MG     P+
Sbjct: 369 CKEDKL-NRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPN 427

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           I TY + I   C   R  +A  L       G  A+ V Y+ L+   C+   + +AL    
Sbjct: 428 IYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFC 487

Query: 259 EMEKEG--GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
            M K G   D   N +    +I  FC +  MKE+  +   + +LG  P + T +++I  +
Sbjct: 488 RMNKTGFEADMRLNNI----LIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCY 543

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C EG++D A +    +   G V     Y SL+  L +   + EA KL+  M+  G+ P  
Sbjct: 544 CKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPE 603

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +    +  E C          L E ++K  ++ +V +     L+  LC +     AA   
Sbjct: 604 VTRVTLAYEYCKRNDSANAMILLEPLDKKLWIRTVRT-----LVRKLCSEKKVGVAALFF 658

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
           + +L+K        +        +SG   L+T+L +
Sbjct: 659 QKLLEKDSSADRVTLAAFTTACSESGKNNLVTDLTE 694


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 197/435 (45%), Gaps = 27/435 (6%)

Query: 8   RILSSSVNIKNSKIFALHFTTASPAERFYT---HLQKNPN--NIEKTLATVKAKLDSTCV 62
             LSSS N  +SK  +L+F T   A   +    H+   P+  +  K L ++      + V
Sbjct: 30  HFLSSSHNTFHSK--SLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTV 87

Query: 63  IEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKE 122
           + + H+        GI   I+          + + N  C + R+    S++  +++   +
Sbjct: 88  LSLSHQ----MDSFGIPPNIYTL--------NILINSFCHLQRLGFAFSVLAKILKLGHQ 135

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
                   +++    LC + ++  E + +  KM     +P+ + Y  +I   C+ G   A
Sbjct: 136 PNIATFNTLIR---GLCVEGKIG-EVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSA 191

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L++ M   +  PD++ Y S+I   C   ++  A  LF  M   G + ++  Y++L+ 
Sbjct: 192 AIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIH 251

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            +C L   +    LL EM        PNVV +++V+   C +G + EA  ++D M   G 
Sbjct: 252 ALCNLCEWKHVTALLNEMVNS--KIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGV 309

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN VT + L+ G C+   +DEA ++ D +V  G       YS+L+    + +R+++A  
Sbjct: 310 EPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMY 369

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           LF +M    + P+ +  S ++  LC  G++ +   L+ ++   G +    S  + +LL  
Sbjct: 370 LFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVS--YCILLDY 427

Query: 423 LCRKNHSVEAAKLAR 437
           LC+     EA  L +
Sbjct: 428 LCKNRRLDEAIALLK 442



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 169/335 (50%), Gaps = 8/335 (2%)

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           ++  + NLCE   +      +L +M    + P+ +I++ V+   C++G ++ A +++  M
Sbjct: 249 LIHALCNLCEWKHVT----ALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMM 304

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + P+++TY +++ G C    +++A  +F  M   G A ++V+YS L++G C++  +
Sbjct: 305 IKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRI 364

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E+A+ L  EM ++  +  PN VTY++++   C  G +++A+ +   M   G  P+ V+  
Sbjct: 365 EKAMYLFEEMCRK--ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYC 422

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            L+   C    LDEA  L+  +           Y+ ++  + R   L+ A  LFS + + 
Sbjct: 423 ILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSK 482

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G+ P+    ++MI  LC  G + E   L+ ++++ G+  S +   ++++  G  R N ++
Sbjct: 483 GLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGY--SPNGCTYNLITRGFLRNNETL 540

Query: 431 EAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
              +L + ML +           +VE L   G ++
Sbjct: 541 RGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQ 575



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 163/332 (49%), Gaps = 4/332 (1%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           S  I ++ + ++  C   V +   I +   K R   +A  +  +M    + P    YN++
Sbjct: 190 SAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSL 249

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I   C   +      L+  M    + P+++ + +++   C  G++ +A  +  +M + G 
Sbjct: 250 IHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGV 309

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             N+V Y+AL+DG C    M+ A+++   M  +G   +P+VV+Y+++I  +C    +++A
Sbjct: 310 EPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKG--FAPDVVSYSTLINGYCKIQRIEKA 367

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           + + + M      PN VT STL+ G C  G L +A  L  ++V  G +     Y  L+  
Sbjct: 368 MYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDY 427

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L + +RL EA  L   +  S + PD    +++I  +C  G++     L+ ++   G   +
Sbjct: 428 LCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPN 487

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           V +  +++++ GLC++    EA+KL   M +K
Sbjct: 488 VWT--YTIMINGLCQQGLLAEASKLFGEMKRK 517



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 4/234 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+  +AM++  +M   +L P+T+ Y+ ++   C  G +  A  L  
Sbjct: 349 VSYSTLINGYCKIQRI-EKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFH 407

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      PD ++Y  ++   C   RL++A  L K ++      ++  Y+ ++DG+CR G
Sbjct: 408 EMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAG 467

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +E A +L   +  +G    PNV TYT +I   C +G++ EA  +   M+  G +PN  T
Sbjct: 468 ELEAARDLFSNLSSKG--LHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCT 525

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            + + +GF          QL+ +++A G  S+    S+++VE++    L ++ K
Sbjct: 526 YNLITRGFLRNNETLRGIQLLQEMLARG-FSADVSTSTVLVEMLSDDGLDQSVK 578



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 3/157 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+  RL +EA+ +L+ +   ++ PD  IY  VI   C  G++ AA +L   +    L+P
Sbjct: 428 LCKNRRL-DEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHP 486

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           ++ TY  MI G C  G L +A  LF  MKR G + N   Y+ +  G  R     R ++LL
Sbjct: 487 NVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLL 546

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
            EM   G   S +V T T ++++    G+ +    IL
Sbjct: 547 QEMLARG--FSADVSTSTVLVEMLSDDGLDQSVKQIL 581



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 12/284 (4%)

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSR 105
           +E  + T  A +D  C+   +         M  + F  A    SY   S + N  C++ R
Sbjct: 309 VEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF--APDVVSY---STLINGYCKIQR 363

Query: 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165
           I++   +     E  ++E    +V    ++  LC   RL  +A+ +  +M      PD +
Sbjct: 364 IEKAMYLF---EEMCRKELIPNTVTYSTLMHGLCHVGRL-QDAIALFHEMVTRGQIPDFV 419

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            Y  ++   C+   +  A  L+K +   ++ PDI  Y  +I G C AG LE A  LF  +
Sbjct: 420 SYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNL 479

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
              G   N+  Y+ +++G+C+ G +  A +L GEM+++G   SPN  TY  + + F    
Sbjct: 480 SSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG--YSPNGCTYNLITRGFLRNN 537

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
                + +L  M A G + +  T + L++    +G LD++ + I
Sbjct: 538 ETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDG-LDQSVKQI 580


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 137/500 (27%), Positives = 215/500 (43%), Gaps = 87/500 (17%)

Query: 18  NSKIFALHFTTASPAERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQ 75
           N K      +T    ERF   L+  K   + EK L  +K K+D   V EVL      +  
Sbjct: 51  NRKFSGKDTSTRKLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVHEVLK--IDVEIN 108

Query: 76  MGIRFFIWAALQSSYRH--SSFM--YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM 131
           + I+FF WA  + ++ H  SSFM   +   E     +    I D+V   +   CV+S   
Sbjct: 109 VKIQFFKWAGKRRNFEHDSSSFMALIHSLDEAGFYGEMWKTIQDMV---RSSTCVISSVY 165

Query: 132 MKVIFNLCEKARLANEAMWV----------------------------LRKMPEF----- 158
           +  I  L  KA++ N+A+ V                            L K+ E      
Sbjct: 166 LSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMC 225

Query: 159 ---DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP------------------ 197
              +  PDT+ Y+ +I  F + G   +A  L   M    LYP                  
Sbjct: 226 NDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKV 285

Query: 198 ----DII-------------TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
               D+I             TY   IKG   AGR++DA  +F  M + GC  ++V  ++L
Sbjct: 286 EKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSL 345

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEA 299
           ++ + ++G +E  L+L  +ME     C PNVVTY +VI+ +F  K    EA    ++M+ 
Sbjct: 346 INILGKVGRLEVTLKLFRKME--SWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKG 403

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G AP+  T S LI GFC    +++A  L++++   G       Y SL+  L + KR + 
Sbjct: 404 CGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEA 463

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A +LF ++  +         +VMI+     G++ E   L+ ++EK+G  S  D   ++ L
Sbjct: 464 ANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLG--SKPDVYAYNAL 521

Query: 420 LLGLCRKNHSVEAAKLARFM 439
           + G+ R     EA  L R M
Sbjct: 522 MSGMVRAGMIDEAQSLLRTM 541



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 13/307 (4%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           R+     + +D+++    +GC   V ++  + N+  K       + + RKM  +  +P+ 
Sbjct: 319 RVDDAYRVFLDMIK----DGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNV 374

Query: 165 IIYNNVIR-LF-CEKGDMIAAD--ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           + YN VI+ LF C+     AA   E MKG G+    P   TY  +I GFC   R+E A  
Sbjct: 375 VTYNTVIKALFECKAPASEAASWFEKMKGCGIA---PSSFTYSILIDGFCKTNRIEKALL 431

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L + M   G      AY +L++ + ++   E A EL  E+++  G  S  V  Y  +I+ 
Sbjct: 432 LLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARV--YAVMIKH 489

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           F   G + EA+ + + ME LG  P+    + L+ G    G +DEA  L+  +   G    
Sbjct: 490 FGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPD 549

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ ++  L RT     A ++F+KM +S +KPD ++ + ++  L   G   E   L  
Sbjct: 550 LNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMR 609

Query: 401 DIEKIGF 407
           ++   GF
Sbjct: 610 EMNLKGF 616



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
           +Y  +I+ F + G +  A +L   M  +   PD+  Y +++ G   AG +++A  L + M
Sbjct: 482 VYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTM 541

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
             +GC+ +L +++ +L+G+ R G  +RA+E+  +M  +     P+ V+Y +V+      G
Sbjct: 542 DENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKM--KSSIIKPDAVSYNTVLGCLSHAG 599

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           + +EA  ++  M   G   N +T +++++     G +DE
Sbjct: 600 LFEEAAKLMREMNLKGFEYNNITYTSILEAV---GKVDE 635



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 106/215 (49%), Gaps = 3/215 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+  R+  +A+ +L +M E    P    Y ++I    +     AA+EL   +   
Sbjct: 416 LIDGFCKTNRI-EKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKEN 474

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             +     Y  MIK F   GRL +A  LF  M++ G   ++ AY+AL+ G+ R G ++ A
Sbjct: 475 CGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEA 534

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL  M++ G  CSP++ ++  ++      G+   A+ +  +M++    P+ V+ +T++
Sbjct: 535 QSLLRTMDENG--CSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVL 592

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
                 G  +EA +L+ ++   G   +   Y+S++
Sbjct: 593 GCLSHAGLFEEAAKLMREMNLKGFEYNNITYTSIL 627



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +A + +EA  +LR M E    PD   +N ++      G    A E+   M    + PD +
Sbjct: 527 RAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAV 586

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           +Y +++    +AG  E+A  L + M   G   N + Y+++L+ + ++
Sbjct: 587 SYNTVLGCLSHAGLFEEAAKLMREMNLKGFEYNNITYTSILEAVGKV 633


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 160/309 (51%), Gaps = 9/309 (2%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMP 156
           N  C+M R++    ++ ++V++  +    V++ +  ++ N  C+  R+  EA  +L +M 
Sbjct: 357 NGYCQMGRMEDAARLLNEMVDSRLQ----VNLFVYNIMINGYCKLGRMV-EAHNILHEMT 411

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
              +RPDT  YN+++  +C+KG M  A E    M         +TY +++KGFC+ G ++
Sbjct: 412 GVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSID 471

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           DA  L+ +M + G A N ++ S LLDG  + G  E+AL L  E    G   + N  T+ +
Sbjct: 472 DALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARG--LAKNTTTFNT 529

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           VI   C    M EA  ++D+M+   C P+ +T  TL  G+C  G++D A ++++++   G
Sbjct: 530 VINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLG 589

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
              +   ++SL+      K+  +   +  +M   G+ P+ +A   +I   C  G +   +
Sbjct: 590 FAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAY 649

Query: 397 CLY-EDIEK 404
            LY E IEK
Sbjct: 650 NLYLEMIEK 658



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 163/364 (44%), Gaps = 7/364 (1%)

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           P +   +VE YKE     S     ++      A   + A+ V  +M     R      N+
Sbjct: 156 PPLFPHLVEVYKEFS--FSAASFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNS 213

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           ++    + GD+ A   + + M      PD  T   M K +C    +  A    + M + G
Sbjct: 214 ILNRLAQTGDLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMG 273

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              NLVAY A+++G C +G    A  +L  +   G   SPN+VTYT +++ +C +  M+E
Sbjct: 274 VEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRG--FSPNIVTYTLLVKGYCNEKNMEE 331

Query: 290 ALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           A G++  + +      +      +I G+C  G +++A +L++++V      +   Y+ ++
Sbjct: 332 AEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMI 391

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
               +  R+ EA  +  +M   GV+PD  + + ++   C  G + + F  Y  + + GF 
Sbjct: 392 NGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFA 451

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
           ++  +  ++ LL G C      +A +L   MLKK I         +++   KSG  E   
Sbjct: 452 ATTLT--YNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKAL 509

Query: 469 NLPK 472
           NL K
Sbjct: 510 NLWK 513



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 123/250 (49%), Gaps = 2/250 (0%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           D  ++  VI  +C+ G M  A  L+  M    L  ++  Y  MI G+C  GR+ +A  + 
Sbjct: 348 DEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNIL 407

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   +  +Y++L+DG C+ G M +A E    M + G   +   +TY ++++ FC
Sbjct: 408 HEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNG--FAATTLTYNALLKGFC 465

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G + +AL +   M   G APN ++ STL+ GF   G  ++A  L  + +A G   +  
Sbjct: 466 SLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTT 525

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            +++++  L + +R+ EAE+L  KM      PD +    +    C  G +     +  ++
Sbjct: 526 TFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNEL 585

Query: 403 EKIGFLSSVD 412
           E +GF  +++
Sbjct: 586 ENLGFAPTIE 595



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 121/257 (47%), Gaps = 28/257 (10%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI-------------- 199
           +M E  L P+  I ++++  F  KG    A+ +++ +   D+ PDI              
Sbjct: 654 EMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISAPRLEIGKVANFI 713

Query: 200 ------------ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
                       I +  +I G C  GR+EDA  L   +K  G  A+   YS+L+ G    
Sbjct: 714 DTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSAS 773

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ++ A +L   M   G   +PN+VTY S+I   C  G +  A+ +  ++   G +PN +
Sbjct: 774 GFVDVAFDLRDTMLSVG--LTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAI 831

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T +TLI   C +G + EA++L  +++  G   +   YS L+  L     ++EA KL  +M
Sbjct: 832 TYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQM 891

Query: 368 LASGVKPDGLACSVMIR 384
           + + V P+ +    +I+
Sbjct: 892 IENNVDPNYVTYWTLIQ 908



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 157/372 (42%), Gaps = 66/372 (17%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM------ 187
           VI  LC+  R+  EA  ++ KM ++   PD I Y  +   +C+ GDM  A  ++      
Sbjct: 530 VINGLCKIERMP-EAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENL 588

Query: 188 -------------------KGMGLID----------LYPDIITYVSMIKGFCNAGRLEDA 218
                              K  G ++          L P+ + Y ++I G+C  G L  A
Sbjct: 589 GFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTA 648

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV------- 271
             L+  M   G   NL   S+L+    R G  + A  +L  +   G D  P++       
Sbjct: 649 YNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLV--GTDMIPDISAPRLEI 706

Query: 272 -------------------VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
                              + +  VI   C  G +++A  +L  ++  G   +  T S+L
Sbjct: 707 GKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSL 766

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G    G +D A+ L D +++ G   +   Y+SL+  L ++  L  A  LF K+   G+
Sbjct: 767 IHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGI 826

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            P+ +  + +I + C  G + E F L + + + G   +V +  +S+L+ GLC + +  EA
Sbjct: 827 SPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFT--YSILINGLCTQGYMEEA 884

Query: 433 AKLARFMLKKRI 444
            KL   M++  +
Sbjct: 885 IKLLDQMIENNV 896



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 2/189 (1%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           I++N VI   C+ G +  A  L+  +       D  TY S+I G   +G ++ A  L   
Sbjct: 726 IMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDT 785

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   G   N+V Y++L+ G+C+ G + RA+ L  ++  +G   SPN +TY ++I   C  
Sbjct: 786 MLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKG--ISPNAITYNTLIDKHCKD 843

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + EA  +  RM   G  P   T S LI G C +G ++EA +L+D+++      +   Y
Sbjct: 844 GYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTY 903

Query: 345 SSLVVELVR 353
            +L+   VR
Sbjct: 904 WTLIQGYVR 912



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 10/203 (4%)

Query: 81  FIWAALQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136
           FI      ++  +  M+N      C++ RI+   +++ D+    K++G V        + 
Sbjct: 712 FIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADL----KDKGFVADNFTYSSLI 767

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           + C  +   + A  +   M    L P+ + YN++I   C+ G++  A  L K +    + 
Sbjct: 768 HGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGIS 827

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+ ITY ++I   C  G + +A  L + M   G    +  YS L++G+C  G ME A++L
Sbjct: 828 PNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKL 887

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQ 279
           L +M +   D  PN VTY ++IQ
Sbjct: 888 LDQMIENNVD--PNYVTYWTLIQ 908



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 1/123 (0%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I+ LC+   L+  A+ + +K+    + P+ I YN +I   C+ G +  A +L +
Sbjct: 796 VTYNSLIYGLCKSGELS-RAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQ 854

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    ++P + TY  +I G C  G +E+A  L   M  +    N V Y  L+ G  R  
Sbjct: 855 RMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCE 914

Query: 249 SME 251
           S++
Sbjct: 915 SVD 917


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 39/316 (12%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + YN +I      G++ AA      M  + L PD+ITY S+I G+C AG L++A  L
Sbjct: 335 PTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWL 394

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT------ 275
           F  +KR G A +++ Y+ LLDG CRLG +E A     EM ++G  C P+V TYT      
Sbjct: 395 FGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQG--CQPDVSTYTILMNGS 452

Query: 276 ------SVIQIFCGK-----------------------GMMKEALGILDRMEALGCAPNR 306
                 ++++ F  +                       G   EA  + + M + G + + 
Sbjct: 453 RKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDT 512

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT +  + G C  GNL +AY L  K+V+ G       Y+ L+       RL+EA  +F  
Sbjct: 513 VTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDG 572

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           ML SG+ P  +  +V I   C  G +   +  ++ + + G     +   ++VL+  LCR 
Sbjct: 573 MLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGV--RPNEVTYNVLIHALCRM 630

Query: 427 NHSVEAAKLARFMLKK 442
             +  A +    ML++
Sbjct: 631 GRTNLAYQHFHEMLER 646



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 141/325 (43%), Gaps = 40/325 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+   L  EA+W+   +    L P  + YN ++  +C  GD+  A    + M   
Sbjct: 378 LINGYCKAGNL-KEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQ 436

Query: 194 DLYPDIITY------------VSMIKGF------------CNA-----------GRLEDA 218
              PD+ TY            ++M++ F            C A           G   +A
Sbjct: 437 GCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEA 496

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L +VM   G +++ V Y+  LDG+C+ G+++ A  L  +M  +G    P+ +TYT +I
Sbjct: 497 FQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDG--LQPDCITYTCLI 554

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C +G ++EA  I D M   G  P+ VT +  I  +C  GNL  AY    K++  G  
Sbjct: 555 HAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVR 614

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y+ L+  L R  R   A + F +ML  G+ P+    +++I   C  G   E   L
Sbjct: 615 PNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRL 674

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGL 423
           Y ++ + G     D   H+ L  G 
Sbjct: 675 YSEMHQHGI--HPDHCTHNALFKGF 697



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 113/261 (43%), Gaps = 7/261 (2%)

Query: 78  IRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137
           +R F    L    +   F YN       I  + S    + E     G         +  +
Sbjct: 461 VREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLD 520

Query: 138 -LCEKARLANE-AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
            LC+   L +   +W+  KM    L+PD I Y  +I   CE+G +  A ++  GM +  L
Sbjct: 521 GLCKSGNLKDAYVLWM--KMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGL 578

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            P  +TY   I  +C  G L  A G F+ M   G   N V Y+ L+  +CR+G    A +
Sbjct: 579 PPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQ 638

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
              EM + G   SPN  TYT +I   C +G  +EA+ +   M   G  P+  T + L KG
Sbjct: 639 HFHEMLERG--LSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKG 696

Query: 316 FCVEGNLDEAYQLIDKVVAGG 336
           F  EG    A Q ++ VV G 
Sbjct: 697 F-DEGQSKHAIQYMENVVLGA 716



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 125/238 (52%), Gaps = 3/238 (1%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +++   +  R +D   ++  M + G   ++V Y+ LLD   R G +++A +LL EME   
Sbjct: 202 VLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARP 261

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           G C P+ VTY  VI     KG +++A  ++DRM  +    +  T + LI G+   G++++
Sbjct: 262 GGCLPSDVTYNVVINGLARKGELEKAAQLVDRMR-MSKKASAFTFNPLITGYFARGSVEK 320

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  L  ++   G V +   Y++++  + R+  ++ A   F +M A G+ PD +  + +I 
Sbjct: 321 AGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLIN 380

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             C  G + E   L+ D+++ G   SV +  +++LL G CR     EA +  + M+++
Sbjct: 381 GYCKAGNLKEALWLFGDLKRAGLAPSVLT--YNILLDGYCRLGDLEEARRFKQEMVEQ 436



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 144/338 (42%), Gaps = 48/338 (14%)

Query: 137 NLCEKARLANEAMW-----VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
           NL  +A L +EA W     V  +M +  + P  + YN ++  F  +G +  A +L++ M 
Sbjct: 200 NLVLRA-LRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREME 258

Query: 192 LID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
                  P  +TY  +I G    G LE A  L   M R    A+   ++ L+ G    GS
Sbjct: 259 ARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM-RMSKKASAFTFNPLITGYFARGS 317

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           +E+A  L  EME EG    P VVTY ++I      G ++ A      M A+G  P+ +T 
Sbjct: 318 VEKAGALQLEMENEG--IVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITY 375

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK------- 362
           ++LI G+C  GNL EA  L   +   G   S   Y+ L+    R   L+EA +       
Sbjct: 376 NSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVE 435

Query: 363 ----------------------------LFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                                        F +ML+ G++PD  A +  I    + G   E
Sbjct: 436 QGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSE 495

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            F L E +   G   S D+  +++ L GLC+  +  +A
Sbjct: 496 AFQLTEVMISRGI--SSDTVTYNIFLDGLCKSGNLKDA 531


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 146/275 (53%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + YN ++  +   G +     L   M    + PD+ TY  +I 
Sbjct: 136 AQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLIN 195

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 196 GLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 253

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG L  A++
Sbjct: 254 LPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFE 313

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+ PD    +++I E C
Sbjct: 314 HRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFC 373

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G  L +++++ G + SV +  ++VL+ G
Sbjct: 374 KKGDVWKGSKLLKEMQRDGHVPSVVT--YNVLMNG 406



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 15/251 (5%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   + V+Y+ L++G  RLG ++   
Sbjct: 113 YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGF 172

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M +A  + D M   G  PN VT +TLI 
Sbjct: 173 RLKSAMLASG--VQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLID 230

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++   +     Y++L+  L +   LK+A  L   M   G+KP
Sbjct: 231 GHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKP 290

Query: 375 DGLACSVMIRELCLGGQVLEGF-----CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           D +  + +I   C  G ++  F      + E+I        +D  +++ L+ GLC++  S
Sbjct: 291 DKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIR-------LDDVVYTALISGLCQEGRS 343

Query: 430 VEAAKLARFML 440
           V+A K+ R ML
Sbjct: 344 VDAEKMLREML 354



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 107/251 (42%), Gaps = 16/251 (6%)

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEG----GDCSPNVVTYTSVIQIFCGKGMM 287
           +++  +S L+      G +  A+E      K       D    V+ Y   ++ F      
Sbjct: 45  SDIYVFSGLITAYLESGFLRDAIECYXLTRKHKLWVPFDTCRKVLEYLMKLKYF------ 98

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           K   G  + +   G   +    + L+  FC +G++  A  + D +   G   S   Y++L
Sbjct: 99  KLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTL 158

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +   +R   L E  +L S MLASGV+PD    SV+I  LC   ++ +   L++++   G 
Sbjct: 159 MNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGL 218

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD---- 463
           +   +    + L+ G C+      A ++ + ML + +       + ++  L K GD    
Sbjct: 219 VP--NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 276

Query: 464 EELITNLPKIG 474
            +LI ++ + G
Sbjct: 277 HDLIDDMSRKG 287


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 154/299 (51%), Gaps = 4/299 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V M   I +   K +L +EA  +  +M    +  D + Y+ +I  FC +G +  A  L+
Sbjct: 198 NVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLL 257

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M L  + P++ TY  ++   C  G++++A  +  VM +     +++ YS L+DG   +
Sbjct: 258 NEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLV 317

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             +++A  +   M   G   +P+V TYT +I  FC   M+ EAL +   M      P  V
Sbjct: 318 YEVKKAQHVFNAMSLMG--VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIV 375

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S+LI G C  G +   + LID++   G  ++   YSSL+  L +   L  A  LF+KM
Sbjct: 376 TYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKM 435

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
              G++P+    ++++  LC GG++ +   +++D+   G+  +V +  ++V++ G C++
Sbjct: 436 KDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYT--YNVMIDGHCKQ 492



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 183/377 (48%), Gaps = 14/377 (3%)

Query: 93  SSFMYNRACEMSRIKQNPSI--IIDVVEAYKEEGCV---VSVKMMKVIFNLCEKARLANE 147
           SSF+ N +       Q PSI  + D V  +    C+     +     I +   K +  + 
Sbjct: 19  SSFLQNSSHSHFH-SQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYST 77

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +  ++    ++PD I  N +I  FC  G +     ++  +      PD +T  ++IK
Sbjct: 78  AVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIK 137

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G+++ A      +   G   N V+Y  L++G+C++G    A++LL ++  +G   
Sbjct: 138 GLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKI--DGRLT 195

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PNVV Y+++I   C   ++ EA G+   M   G + + VT STLI GFC+EG L EA  
Sbjct: 196 KPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIG 255

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L++++V      +   Y+ LV  L +  ++KEA+ + + ML + VKPD +  S ++    
Sbjct: 256 LLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYF 315

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIH--SVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           L  +V +   ++  +  +G    V  D+H  ++L+ G C+     EA  L + M +K + 
Sbjct: 316 LVYEVKKAQHVFNAMSLMG----VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMV 371

Query: 446 LQGPYVDKIVEHLKKSG 462
                   +++ L KSG
Sbjct: 372 PGIVTYSSLIDGLCKSG 388



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 164/340 (48%), Gaps = 19/340 (5%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I+  C + +L  EA+ +L +M    + P+   YN ++   C++G +  A  ++ 
Sbjct: 235 VTYSTLIYGFCIEGKLK-EAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLA 293

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD+ITY +++ G+     ++ A  +F  M   G   ++  Y+ L++G C+  
Sbjct: 294 VMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNK 353

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ AL L  EM ++  +  P +VTY+S+I   C  G +     ++D M   G   N +T
Sbjct: 354 MVDEALNLFKEMHQK--NMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVIT 411

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S+LI G C  G+LD A  L +K+   G   +   ++ L+  L +  RLK+A+++F  +L
Sbjct: 412 YSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLL 471

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G   +    +VMI   C  G + E   +   +E  G +   D+    ++++ L +K+ 
Sbjct: 472 TKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIP--DAVTFEIIIIALFKKDE 529

Query: 429 SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
           +            K++W       +IVEH  K G+   IT
Sbjct: 530 NG-----GNVGFDKKVW-------EIVEH--KKGETPSIT 555



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 125/246 (50%), Gaps = 10/246 (4%)

Query: 94   SFMYNRACEMSRIKQNPSIIIDVVE-AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVL 152
            + + N  C M +I  N SI+  +++  Y  +    ++    +I  LC K ++ N+A+   
Sbjct: 965  NILINCFCHMGQITFNFSILAKILKRGYHPD----TITFTTLINGLCLKGQV-NKALHFH 1019

Query: 153  RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
             K+     + + + Y  +I   C+ GD  AA +L++ +      PD++ Y ++I   C  
Sbjct: 1020 DKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKH 1079

Query: 213  GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
              +  A GLF  M   G +A++V Y+ L+ G C +G ++ A+ LL +M  +    +PNV 
Sbjct: 1080 QLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLK--TINPNVR 1137

Query: 273  TYTSVIQIFC--GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
            TY  ++   C  GK ++ E+L +L +ME  GC  N VT   +I     +   D+  +L+ 
Sbjct: 1138 TYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLH 1197

Query: 331  KVVAGG 336
            +++A G
Sbjct: 1198 EMIARG 1203



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 39/250 (15%)

Query: 160  LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            ++PD    N +I  FC  G +     ++  +     +PD IT+ ++I G C  G++  A 
Sbjct: 957  IQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKAL 1016

Query: 220  GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
                 +   G   N V+Y  L++G+C++G    A++LL +++  G    P+VV Y ++I 
Sbjct: 1017 HFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID--GRLTKPDVVMYNTIID 1074

Query: 280  IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG---- 335
              C   ++ +A G+   M   G + + VT +TLI GFC+ G L EA  L++K+V      
Sbjct: 1075 ALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINP 1134

Query: 336  ---------------------------GSVSSGGCYSSLVV------ELVRTKRLKEAEK 362
                                         +   GC ++ V        L       + EK
Sbjct: 1135 NVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEK 1194

Query: 363  LFSKMLASGV 372
            L  +M+A G+
Sbjct: 1195 LLHEMIARGL 1204



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 11/275 (4%)

Query: 36   YTHLQKNPNNIEKTLATVKAKLDSTCV------IEVLHRCFPSQSQMGIRFFIWAA-LQS 88
            Y  +  NP     T  ++  +L+   +      + +L  CF    Q+   F I A  L+ 
Sbjct: 931  YIRIPHNPMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKR 990

Query: 89   SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
             Y   +  +        +K   +  +   +    +G  ++      + N   K      A
Sbjct: 991  GYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAA 1050

Query: 149  MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
            + +LRK+     +PD ++YN +I   C+   +  A  L   M +  +  D++TY ++I G
Sbjct: 1051 IKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYG 1110

Query: 209  FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS--MERALELLGEMEKEGGD 266
            FC  G+L++A GL   M       N+  Y+ L+D +C+ G   ++ +L +L +ME  G  
Sbjct: 1111 FCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNG-- 1168

Query: 267  CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            C  N VT+  +I     K    +   +L  M A G
Sbjct: 1169 CKANAVTFEIIISALFEKDENDKVEKLLHEMIARG 1203



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 10/222 (4%)

Query: 249  SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            S+   LEL G          P++ T   +I  FC  G +     IL ++   G  P+ +T
Sbjct: 947  SLSHRLELKG--------IQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTIT 998

Query: 309  ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
             +TLI G C++G +++A    DK++A G   +   Y +L+  + +    + A KL  K+ 
Sbjct: 999  FTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID 1058

Query: 369  ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
                KPD +  + +I  LC    V + + L+ ++   G   S D   ++ L+ G C    
Sbjct: 1059 GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGI--SADVVTYNTLIYGFCIVGK 1116

Query: 429  SVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
              EA  L   M+ K I       + +V+ L K G + L  +L
Sbjct: 1117 LKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESL 1158


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 163/337 (48%), Gaps = 20/337 (5%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F +N+A E           + +VE    +GC   +     + N LC++    + A+ 
Sbjct: 178 HGLFQHNKASEA----------VALVERMVVKGCQPDLVTYGAVINGLCKRGE-PDLALN 226

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L KM +  +  D +IY+ VI   C+   +  A  L   M    + PD+ TY S+I   C
Sbjct: 227 LLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLC 286

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N GR  DA  L   M       N+V +++L+D   + G +  A +L  EM +   D  PN
Sbjct: 287 NYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID--PN 344

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           +VTY S+I  FC    + EA  I   M +  C P+ VT +TLI GFC    + +  +L  
Sbjct: 345 IVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFR 404

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
            +   G V +   Y++L+    +      A+ +F +M++ GV P+ +  + ++  LC  G
Sbjct: 405 DMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 464

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL--GLCR 425
           ++ +   ++E ++K    S ++ DI++  ++  G+C+
Sbjct: 465 KLEKAMVVFEYLQK----SKMEPDIYTYNIMSEGMCK 497



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 151/302 (50%), Gaps = 5/302 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R + +A  +L  M E  + P+ + +N++I  F ++G +I A++L   M    + P
Sbjct: 285 LCNYGRWS-DASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +I+TY S+I GFC   RL++A  +F +M    C  ++V Y+ L++G C+   +   +EL 
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M + G     N VTYT++I  F        A  +  +M + G  PN +T +TL+ G C
Sbjct: 404 RDMSRRG--LVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 461

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G L++A  + + +           Y+ +   + +  ++++   LF  +   GVKPD +
Sbjct: 462 KNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVI 521

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           A + MI   C  G   E + L+  +++ G L   DS  ++ L+    R      +A+L +
Sbjct: 522 AYNTMISGFCKKGLKEEAYTLFIKMKEDGPLP--DSGTYNTLIRAHLRDGDKAASAELIK 579

Query: 438 FM 439
            M
Sbjct: 580 EM 581



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 172/360 (47%), Gaps = 24/360 (6%)

Query: 102 EMSRIKQNPSII--------------IDVVEAYKEEGCVVSVKMMKVIFN-----LCEKA 142
           EM + +  PSI+               D+V ++ E+  ++ V      +N     LC ++
Sbjct: 55  EMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRS 114

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           +L+  A+ +L KM +    P  +  N+++  FC    +  A  L+  M  +   PD +T+
Sbjct: 115 QLSF-ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTF 173

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            +++ G     +  +A  L + M   GC  +LV Y A+++G+C+ G  + AL LL +MEK
Sbjct: 174 TTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEK 233

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
             G    +VV Y++VI   C    + +AL +   M+  G  P+  T S+LI   C  G  
Sbjct: 234 --GKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRW 291

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            +A +L+  ++      +   ++SL+    +  +L EAEKLF +M+   + P+ +  + +
Sbjct: 292 SDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSL 351

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           I   C+  ++ E   ++  +     L  V +  ++ L+ G C+    V+  +L R M ++
Sbjct: 352 INGFCMHDRLDEAQQIFTLMVSKDCLPDVVT--YNTLINGFCKAKKVVDGMELFRDMSRR 409



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 129/266 (48%), Gaps = 13/266 (4%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157
           N  C   R+ +   I   +V     + C+  V     + N   KA+   + M + R M  
Sbjct: 353 NGFCMHDRLDEAQQIFTLMVS----KDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
             L  +T+ Y  +I  F +  D   A  + K M    ++P+I+TY +++ G C  G+LE 
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK 468

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  +F+ +++     ++  Y+ + +G+C+ G +E   +L   +  +G    P+V+ Y ++
Sbjct: 469 AMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG--VKPDVIAYNTM 526

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA--- 334
           I  FC KG+ +EA  +  +M+  G  P+  T +TLI+    +G+   + +LI ++ +   
Sbjct: 527 ISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRF 586

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEA 360
            G  S+ G    LV +++   RL + 
Sbjct: 587 AGDASTYG----LVTDMLHDGRLDKG 608



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 125/255 (49%), Gaps = 4/255 (1%)

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M ++ +  ++ TY  MI   C   +L  A  +   M + G   ++V  ++LL+G C    
Sbjct: 91  MEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNR 150

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           +  A+ L+ +M + G    P+ VT+T+++          EA+ +++RM   GC P+ VT 
Sbjct: 151 ISEAVALVDQMVEMG--YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 208

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
             +I G C  G  D A  L++K+  G   +    YS+++  L + + + +A  LF++M  
Sbjct: 209 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDN 268

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            G++PD    S +I  LC  G+  +   L  D+ +     +V +   + L+    ++   
Sbjct: 269 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVT--FNSLIDAFAKEGKL 326

Query: 430 VEAAKLARFMLKKRI 444
           +EA KL   M+++ I
Sbjct: 327 IEAEKLFDEMIQRSI 341



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 126/267 (47%), Gaps = 4/267 (1%)

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
           +P I+ +  ++       + +      + M+  G + NL  Y+ +++ +CR   +  AL 
Sbjct: 62  FPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALA 121

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           +LG+M K G    P++VT  S++  FC    + EA+ ++D+M  +G  P+ VT +TL+ G
Sbjct: 122 ILGKMMKLG--YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHG 179

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
                   EA  L++++V  G       Y +++  L +      A  L +KM    ++ D
Sbjct: 180 LFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEAD 239

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  S +I  LC    V +   L+ +++  G    V +  +S L+  LC      +A++L
Sbjct: 240 VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFT--YSSLISCLCNYGRWSDASRL 297

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              ML+++I       + +++   K G
Sbjct: 298 LSDMLERKINPNVVTFNSLIDAFAKEG 324



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 8/233 (3%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L++A  LF  M +     ++V +S LL  I ++   +  +    +ME  G   S N+ T
Sbjct: 45  KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILG--VSHNLYT 102

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y  +I   C +  +  AL IL +M  LG  P+ VT+++L+ GFC    + EA  L+D++V
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 162

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G       +++LV  L +  +  EA  L  +M+  G +PD +    +I  LC  G+  
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222

Query: 394 EGFCLYEDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
               L   +EK      +++D  I+S ++  LC+  H  +A  L   M  K I
Sbjct: 223 LALNLLNKMEK----GKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGI 271


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 133/266 (50%), Gaps = 2/266 (0%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           KE G   S +    + +   + R A EA  +L++M E  L P  +    VI  +C++G M
Sbjct: 281 KELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRM 340

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  +++ M L    P++ TY ++++GFCN G++  A  L   M+  G   + V Y+ L
Sbjct: 341 SDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLL 400

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G C  G +E A  LL  ME +G     +  TY ++I   C  G   +A  + D +E  
Sbjct: 401 IRGQCIDGHIESAFRLLRLMEGDG--LIADQYTYNALINALCKDGRTDQACSLFDSLETR 458

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN VT ++LI G C  G  D A++ ++K+V+ G       YSS +  L + K  +E 
Sbjct: 459 GIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEG 518

Query: 361 EKLFSKMLASGVKPDGLACSVMIREL 386
                +ML   VKP  +  +++I +L
Sbjct: 519 LSFIGEMLQKDVKPSTVNYTIVIHKL 544



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 155/324 (47%), Gaps = 39/324 (12%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           KMP      D + Y  +I   CE G +   DE ++  G +D  PD+  Y +++KG CNA 
Sbjct: 213 KMPLRGFAQDVVSYATLIEGLCEAGRI---DEAVELFGEMD-QPDMHMYAALVKGLCNAE 268

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--------- 264
           R E+   + + MK  G   +  AY+A++D  CR    + A E+L EM ++G         
Sbjct: 269 RGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCT 328

Query: 265 ------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
                                     C PNV TY +++Q FC +G + +A+ +L++M A 
Sbjct: 329 AVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRAC 388

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P+ VT + LI+G C++G+++ A++L+  +   G ++    Y++L+  L +  R  +A
Sbjct: 389 GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQA 448

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             LF  +   G+KP+ +  + +I  LC  G+    +   E +   G   + D+  +S  +
Sbjct: 449 CSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG--CTPDTYTYSSFI 506

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
             LC+   S E       ML+K +
Sbjct: 507 EHLCKMKGSQEGLSFIGEMLQKDV 530



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 157/313 (50%), Gaps = 10/313 (3%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CVV+     VI   C++ R++ +A+ VL  M     +P+   YN +++ FC +G +  A 
Sbjct: 323 CVVTCT--AVINAYCKEGRMS-DALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAM 379

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L+  M    + PD +TY  +I+G C  G +E A  L ++M+  G  A+   Y+AL++ +
Sbjct: 380 TLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINAL 439

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G  ++A  L   +E  G    PN VT+ S+I   C  G    A   L++M + GC P
Sbjct: 440 CKDGRTDQACSLFDSLETRG--IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTP 497

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           +  T S+ I+  C      E    I +++      S   Y+ ++ +L++ +      + +
Sbjct: 498 DTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTW 557

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG-- 422
            +M++SG  PD +  +  +R  C+ G++ E   +  ++ K G   +VD+  ++ L+ G  
Sbjct: 558 GEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGV--TVDTMAYNTLMDGHA 615

Query: 423 -LCRKNHSVEAAK 434
            + + +H+V   K
Sbjct: 616 SIGQTDHAVSILK 628



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 171/419 (40%), Gaps = 94/419 (22%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMP 156
           N  C+  R+    S  + V+E  K  GC  +V     +    C + ++ ++AM +L KM 
Sbjct: 332 NAYCKEGRM----SDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKV-HKAMTLLNKMR 386

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADEL---MKGMGLI-DLY---------------- 196
              + PD + YN +IR  C  G + +A  L   M+G GLI D Y                
Sbjct: 387 ACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTD 446

Query: 197 ---------------PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
                          P+ +T+ S+I G C +G+ + A    + M   GC  +   YS+ +
Sbjct: 447 QACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFI 506

Query: 242 DGICRLGSMERALELLGEM---------------------------------EKEGGDCS 268
           + +C++   +  L  +GEM                                 E     C+
Sbjct: 507 EHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCN 566

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P+VVTYT+ ++ +C +G + EA  +L  M   G   + +  +TL+ G    G  D A  +
Sbjct: 567 PDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSI 626

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
           + ++ +  SV +   Y  L+  LVR + +++   L          P G+  ++ + ++  
Sbjct: 627 LKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPL---------TPAGVWKAIELTDV-- 675

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
                  F L++ ++K  FL   +S  +S +L G      + EA  L   M +  I L 
Sbjct: 676 -------FGLFDVMKKNEFLP--NSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 725



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 141/312 (45%), Gaps = 22/312 (7%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I +LC K + + E +  + +M + D++P T+ Y  VI    ++ +          M    
Sbjct: 506 IEHLC-KMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSG 564

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             PD++TY + ++ +C  GRL +A  +   M ++G   + +AY+ L+DG   +G  + A+
Sbjct: 565 CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAV 624

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL-----------------GILDRM 297
            +L +M        PN  TY  +++      ++++ L                 G+ D M
Sbjct: 625 SILKQMTSVAS--VPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVM 682

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           +     PN  T S++++GF  +G  +EA  L+  +       +   Y++LV    ++KR 
Sbjct: 683 KKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRY 742

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
            +A  L   M+  G  P  ++   ++  L   GQ  +   ++ +     +  S D  +  
Sbjct: 743 LDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDY--SPDEIVWK 800

Query: 418 VLLLGLCRKNHS 429
           V++ GL +K HS
Sbjct: 801 VIIDGLIKKGHS 812



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 6/162 (3%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--GLIDLYPDIITYVSMIKGFCNA 212
           M + +  P++  Y++++  F E G    A  L+  M    I L  DI  Y +++  FC +
Sbjct: 682 MKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDI--YTALVTCFCKS 739

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            R  DA  L   M +HG    L++Y  LL G+   G  ++A E+   M     D SP+ +
Sbjct: 740 KRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIF--MNSRWKDYSPDEI 797

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            +  +I     KG    +  ++  +E + C P+  T + L +
Sbjct: 798 VWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTE 839


>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 669

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 177/388 (45%), Gaps = 40/388 (10%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V+EA K  G    V    +I   C   RLA +A+ ++  MP   + PDT  YN V++  C
Sbjct: 166 VLEAAKVSGAANVVTYTALINGYCRSGRLA-DALNLIASMP---VAPDTYTYNTVLKGLC 221

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
                  A+ELM+ M   + +P+ +T+ + I+ FC  G L+ A  L + M R+GC  ++V
Sbjct: 222 GAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLERMPRYGCTPDVV 281

Query: 236 AYSALLDGICRLGSMERALELLGEM------------------------------EKEGG 265
            YS L++G    G ++ AL LL  M                              E    
Sbjct: 282 IYSTLVNGFSEQGRVDDALVLLNTMLCKPNTVCYNAALKGLCMAERWKDVGELIAEMVRK 341

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           DC PN  T++ +    C  G++  A+ ++++M+  GC P+ V  +TLI  F  +G +D+A
Sbjct: 342 DCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYNTLINYFSEQGRVDDA 401

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             L+D ++      S   +++ +  L RT+R  + E+L ++ML        +  +++I  
Sbjct: 402 LMLLDSMLCNPDTIS---FNAALKALCRTERWYDVEELIAQMLREDCPLIEMTFNILIDS 458

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM-LKKRI 444
           LC  G V     ++E + K  +  + D   +S L+ G   +     A +L + M  K  I
Sbjct: 459 LCQHGLVNHAIEVFEQMPK--YRCTPDIVTYSSLINGFSEQGLVESAIELFQSMPCKPDI 516

Query: 445 WLQGPYVDKIVEHLKKSGDEELITNLPK 472
           +     +  +    +     ELI N+ +
Sbjct: 517 FSYNAVLKGLCRAARWEDAGELIANMAR 544



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 139/289 (48%), Gaps = 23/289 (7%)

Query: 102 EMSRIKQNPSIII--DVVEAYKEEGCVVSVKMM---------KVIFNLCEKARLANEAMW 150
           +M +    P ++I   ++  + E+G V    M+          + FN   KA    E  +
Sbjct: 372 QMQKYGCRPDVVIYNTLINYFSEQGRVDDALMLLDSMLCNPDTISFNAALKALCRTERWY 431

Query: 151 VLRKMPEFDLRPD----TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
            + ++    LR D     + +N +I   C+ G +  A E+ + M      PDI+TY S+I
Sbjct: 432 DVEELIAQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLI 491

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GF   G +E A  LF+ M    C  ++ +Y+A+L G+CR    E A EL+  M ++  D
Sbjct: 492 NGFSEQGLVESAIELFQSMP---CKPDIFSYNAVLKGLCRAARWEDAGELIANMARK--D 546

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PN +T+  +I   C KG    A+ +  +M   G  P+  T + LI GF  +G LD+A 
Sbjct: 547 CPPNEITFNILINSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDAL 606

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            L+  +       S   Y+S +  L R +R KEAE++ ++ML     P+
Sbjct: 607 NLLSTMSCKPDAIS---YNSTLKGLCRAERWKEAEEIVAEMLRKKCPPN 652



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 150/306 (49%), Gaps = 14/306 (4%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   L + AM V+ +M ++  RPD +IYN +I  F E+G +  A  L+  M L +  P
Sbjct: 357 LCQHG-LVDCAMEVVEQMQKYGCRPDVVIYNTLINYFSEQGRVDDALMLLDSM-LCN--P 412

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D I++ + +K  C   R  D   L   M R  C    + ++ L+D +C+ G +  A+E+ 
Sbjct: 413 DTISFNAALKALCRTERWYDVEELIAQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVF 472

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M K    C+P++VTY+S+I  F  +G+++ A+ +    +++ C P+  + + ++KG C
Sbjct: 473 EQMPKY--RCTPDIVTYSSLINGFSEQGLVESAIELF---QSMPCKPDIFSYNAVLKGLC 527

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
                ++A +LI  +       +   ++ L+  L +      A ++F +M   G  PD  
Sbjct: 528 RAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADRAIEVFKQMPEYGSTPDIF 587

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I      G++ +   L   +         D+  ++  L GLCR     EA ++  
Sbjct: 588 TYNALINGFSEQGRLDDALNLLSTMS-----CKPDAISYNSTLKGLCRAERWKEAEEIVA 642

Query: 438 FMLKKR 443
            ML+K+
Sbjct: 643 EMLRKK 648



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 155/327 (47%), Gaps = 15/327 (4%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++A KE G   +V    ++   C   RLA +A  VL +  +     + + Y  +I  +C
Sbjct: 132 VLDALKESGSADAVSHNTLVAGYCRDGRLA-DAERVL-EAAKVSGAANVVTYTALINGYC 189

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G +  A  L+  M +    PD  TY +++KG C A + E A  L + M R+ C  N V
Sbjct: 190 RSGRLADALNLIASMPVA---PDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEV 246

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            ++  +   C+ G ++ A++LL  M + G  C+P+VV Y++++  F  +G + +AL +L+
Sbjct: 247 TFATQIRSFCQNGLLDHAVQLLERMPRYG--CTPDVVIYSTLVNGFSEQGRVDDALVLLN 304

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M    C PN V  +  +KG C+     +  +LI ++V      +   +S L   L +  
Sbjct: 305 TML---CKPNTVCYNAALKGLCMAERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHG 361

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            +  A ++  +M   G +PD +  + +I      G+V +   L + +     L + D+  
Sbjct: 362 LVDCAMEVVEQMQKYGCRPDVVIYNTLINYFSEQGRVDDALMLLDSM-----LCNPDTIS 416

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +  L  LCR     +  +L   ML++
Sbjct: 417 FNAALKALCRTERWYDVEELIAQMLRE 443



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 128/274 (46%), Gaps = 11/274 (4%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++VVE  ++ GC   V +   + N   +    ++A+ +L  M      PDTI +N  ++ 
Sbjct: 367 MEVVEQMQKYGCRPDVVIYNTLINYFSEQGRVDDALMLLDSML---CNPDTISFNAALKA 423

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C        +EL+  M   D     +T+  +I   C  G +  A  +F+ M ++ C  +
Sbjct: 424 LCRTERWYDVEELIAQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPD 483

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V YS+L++G    G +E A+EL   M      C P++ +Y +V++  C     ++A  +
Sbjct: 484 IVTYSSLINGFSEQGLVESAIELFQSMP-----CKPDIFSYNAVLKGLCRAARWEDAGEL 538

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           +  M    C PN +T + LI   C +G  D A ++  ++   GS      Y++L+     
Sbjct: 539 IANMARKDCPPNEITFNILINSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSE 598

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
             RL +A  L S M     KPD ++ +  ++ LC
Sbjct: 599 QGRLDDALNLLSTM---SCKPDAISYNSTLKGLC 629



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 8/196 (4%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I+V E   +  C   +     + N   +  L   A+ + + MP    +PD   YN V++ 
Sbjct: 469 IEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSMP---CKPDIFSYNAVLKG 525

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C       A EL+  M   D  P+ IT+  +I   C  G  + A  +FK M  +G   +
Sbjct: 526 LCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADRAIEVFKQMPEYGSTPD 585

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+AL++G    G ++ AL LL  M      C P+ ++Y S ++  C     KEA  I
Sbjct: 586 IFTYNALINGFSEQGRLDDALNLLSTMS-----CKPDAISYNSTLKGLCRAERWKEAEEI 640

Query: 294 LDRMEALGCAPNRVTI 309
           +  M    C PN VT 
Sbjct: 641 VAEMLRKKCPPNEVTF 656



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 22/196 (11%)

Query: 102 EMSRIKQNPSIII--DVVEAYKEEGCVVSV--------------KMMKVIFNLCEKARLA 145
           +M + +  P I+    ++  + E+G V S                   V+  LC  AR  
Sbjct: 474 QMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSMPCKPDIFSYNAVLKGLCRAARW- 532

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            +A  ++  M   D  P+ I +N +I   C+KG    A E+ K M      PDI TY ++
Sbjct: 533 EDAGELIANMARKDCPPNEITFNILINSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNAL 592

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GF   GRL+DA  L   M    C  + ++Y++ L G+CR    + A E++ EM ++  
Sbjct: 593 INGFSEQGRLDDALNLLSTM---SCKPDAISYNSTLKGLCRAERWKEAEEIVAEMLRK-- 647

Query: 266 DCSPNVVTYTSVIQIF 281
            C PN VT+    Q+F
Sbjct: 648 KCPPNEVTFKYANQLF 663



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 13/273 (4%)

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
            +R   +  D+ AA  L+  M   +  P +I    +IK  C   RL DA  +   +K  G
Sbjct: 82  TLRRLVQLEDLDAALRLVGSMPSSEP-PAVIACNILIKKLCAHRRLADAERVLDALKESG 140

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
            +A+ V+++ L+ G CR G +  A  +L E  K  G  + NVVTYT++I  +C  G + +
Sbjct: 141 -SADAVSHNTLVAGYCRDGRLADAERVL-EAAKVSG--AANVVTYTALINGYCRSGRLAD 196

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           AL ++  M     AP+  T +T++KG C     ++A +L+++++      +   +++ + 
Sbjct: 197 ALNLIASMPV---APDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIR 253

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
              +   L  A +L  +M   G  PD +  S ++      G+V +   L   +     L 
Sbjct: 254 SFCQNGLLDHAVQLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTM-----LC 308

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             ++  ++  L GLC      +  +L   M++K
Sbjct: 309 KPNTVCYNAALKGLCMAERWKDVGELIAEMVRK 341


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 192/430 (44%), Gaps = 43/430 (10%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN----RACE 102
           ++ L   +  L  + V+EV+ R   +   +G +FF +   + S  HS + YN      C+
Sbjct: 63  DRFLGYFREHLTPSHVLEVVKRF--NNPNLGFKFFRFTRERLSMSHSFWTYNMLLRSLCQ 120

Query: 103 -------------MSRIKQNPS-----------IIIDVVEAYKE-------EGCVVSVKM 131
                        M    Q P             + D  +  KE        G  V V +
Sbjct: 121 AGLHNSAKLLYDSMRSDGQLPDSRLLGFLVSSFALADRFDVSKELLAEAQCSGVQVDVIV 180

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
                N+  K    ++A+ + R++       D   +N +IR  C  GD+  A EL+  MG
Sbjct: 181 YNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAFELLGDMG 240

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFK-VMKRHGCAANLVAYSALLDGICRLGSM 250
                PDI+TY  ++ G C   +++ A  L + V  +   A N+V+Y+ ++ G CRL  M
Sbjct: 241 SFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKM 300

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           + A  L  EM + G    PNV T+++++  F   G M  ALG+  ++   GCAPN +T++
Sbjct: 301 DEASSLFYEMVRSG--TKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLT 358

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           +LI G+C  G ++    L  ++ A    ++   YS L+  L ++ RL+EA  L   +  S
Sbjct: 359 SLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQS 418

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
            + P     + +I   C  G + E   +  ++E+       D    ++L++G C K  + 
Sbjct: 419 DIVPLAFVYNPVIDGYCKSGNIDEANAIVAEMEE---KCKPDKLTFTILIIGHCMKGRTP 475

Query: 431 EAAKLARFML 440
           EA  +   ML
Sbjct: 476 EAIGIFYKML 485



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           +  P+ + Y  VI  +C    M  A  L   M      P++ T+ +++ GF  AG +  A
Sbjct: 279 EFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASA 338

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
            G+ K +  HGCA N++  ++L++G CR G +   L+L  EM     +   N+ TY+ +I
Sbjct: 339 LGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNAR--NIPANLYTYSVLI 396

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C    ++EA  +L  ++     P     + +I G+C  GN+DEA  ++ ++      
Sbjct: 397 SALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEMEEKCK- 455

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
                ++ L++      R  EA  +F KMLASG  PD + 
Sbjct: 456 PDKLTFTILIIGHCMKGRTPEAIGIFYKMLASGCTPDDIT 495



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 109/212 (51%), Gaps = 7/212 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C +S++ +  S+  ++V +    G   +V     + +   KA     A+ + +K+     
Sbjct: 295 CRLSKMDEASSLFYEMVRS----GTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGC 350

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ I   ++I  +C  G +    +L + M   ++  ++ TY  +I   C + RL++A  
Sbjct: 351 APNVITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARN 410

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L +++K+         Y+ ++DG C+ G+++ A  ++ EME++   C P+ +T+T +I  
Sbjct: 411 LLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEMEEK---CKPDKLTFTILIIG 467

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
            C KG   EA+GI  +M A GC P+ +TI TL
Sbjct: 468 HCMKGRTPEAIGIFYKMLASGCTPDDITIRTL 499


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 150/290 (51%), Gaps = 5/290 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+K RL++ ++ + R +     + D   Y+ +I+ FC +GD+ +A +LM+ M   +L P
Sbjct: 405 LCKK-RLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAP 463

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D   + S++ GFC  G   +A   F +M   G   ++   + ++D  CR G +E AL L+
Sbjct: 464 DPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLM 523

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM+ +G    PN+ TY +VI   C +   + AL +   M      P+ V  STLI GF 
Sbjct: 524 NEMQTQG--IFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFA 581

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            + N  +A  L  +++  G       Y+ L+  L    R+ EA  LF KM  +G+ PD +
Sbjct: 582 KQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKI 641

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
           + + +I   C  G + + + L+ ++ + G L +V +  ++ L+ G C+ N
Sbjct: 642 SYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVT--YTSLVDGYCKMN 689



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 203/444 (45%), Gaps = 31/444 (6%)

Query: 50  LATVKAKLDSTCVIEVLHRCFPSQSQM--GIRFFIWA---ALQSSYRHSSFMYNRACEMS 104
           L + K    S  V ++L + F + S +   +  F+ A    L+ S R  +F+     E +
Sbjct: 169 LESPKDAARSVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEAN 228

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL------ANEAMWVLRKMPEF 158
           R       +  + E  K  G   +V    ++ N   K           +A  +L +M   
Sbjct: 229 R----REFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERN 284

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGM----GLIDLYPDIITYVSMIKGFCNAGR 214
              P  + Y+  I   C  G + +A + ++ +    GL+++Y     Y ++I G C  G 
Sbjct: 285 GESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVY----CYNAIIHGLCKKGE 340

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           L++A  + + MK  G + ++  YS L+ G C+ G +E+ L L+ EM+    +  P++V+Y
Sbjct: 341 LDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKY--SNMEPSLVSY 398

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           +S+    C K +   +L I   + A G   ++   S LIKGFC++G+LD A++L++++V 
Sbjct: 399 SSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVR 458

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                    + SLV    +      A + F+ ML  G+ P    C+V+I   C  G+V E
Sbjct: 459 NNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEE 518

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
              L  +++  G   ++ +  ++ ++  LC++  S  A +L   MLK+ +         +
Sbjct: 519 ALNLMNEMQTQGIFPNLFT--YNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTL 576

Query: 455 VEHLKKSGDEE----LITNLPKIG 474
           ++   K  + +    L   + KIG
Sbjct: 577 IDGFAKQSNSQKALMLYARMLKIG 600



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 122/236 (51%), Gaps = 2/236 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+     M E  + P     N +I   C +G +  A  LM  M    ++P++ TY ++I 
Sbjct: 484 ALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVIN 543

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             C   + E A  LF +M +     ++V YS L+DG  +  + ++AL L   M K G   
Sbjct: 544 RLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIG--V 601

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +P++V YT +I I C +  M EA  +  +M   G  P++++ +++I GFC  G++ +A+ 
Sbjct: 602 TPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWA 661

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           L ++++  G + +   Y+SLV    +  R+  A+ L  +M   G+ PD +  +V+I
Sbjct: 662 LFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLI 717



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 136/274 (49%), Gaps = 6/274 (2%)

Query: 122 EEGCVVSVKMMKVIFNL-CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E G + S+    VI +  C + R+  EA+ ++ +M    + P+   YN VI   C++   
Sbjct: 493 EGGILPSIATCNVIIDAHCREGRV-EEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKS 551

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A EL   M   ++ P ++ Y ++I GF      + A  L+  M + G   ++VAY+ L
Sbjct: 552 ERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTIL 611

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++ +C    M  A  L  +M + G   +P+ ++YTSVI  FC  G M++A  + + M   
Sbjct: 612 INILCHRSRMCEAYNLFKKMTENG--MTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQR 669

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P  VT ++L+ G+C    +D A  LID++   G       Y+ L+    R   L +A
Sbjct: 670 GHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKA 729

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            ++ ++M  +GV PD +  + M+ E  L  + L+
Sbjct: 730 LEMLNEMKENGVLPDHM--TYMMLEWLLKAKKLK 761


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 174/428 (40%), Gaps = 71/428 (16%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM 103
           N IE  L +    L  + V  ++    P  S +G RFFIWA+     R S   +N   +M
Sbjct: 44  NPIEPALESKVPFLSPSIVTYIIKN--PPNSLLGFRFFIWASKFRRLR-SWVSHNMIIDM 100

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
                   +   V++  K  G  +S     V+     K  +  +A+     M +FD +PD
Sbjct: 101 LIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPD 160

Query: 164 TIIYNNVIRLF-----------------------------------CEKGDMIAADELMK 188
              YN V+ +                                    C+ G    A ++  
Sbjct: 161 VFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFD 220

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P+ ITY  +I G C A + + A  LF  MK HGC  + V Y+ALL G C+LG
Sbjct: 221 EMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLG 280

Query: 249 SMERALELLGEME-------KEGGDC--------------------------SPNVVTYT 275
            ++ AL LL   E       K+G  C                           P+V+ YT
Sbjct: 281 RVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYT 340

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
            +++     G  K+AL +L+ M   G  P+    + LIKG+C  G LDEA  L  ++   
Sbjct: 341 IMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKN 400

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
              SS   Y+ L+  + R+  + +A+++F++M   G  P  +  + +I   C  G + + 
Sbjct: 401 DCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKA 460

Query: 396 FCLYEDIE 403
             L+  +E
Sbjct: 461 QLLFYKME 468



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 171/369 (46%), Gaps = 43/369 (11%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA    +A+ +L +M E  L PDT  YN +I+ +C+ G +  A  L   +   D +    
Sbjct: 348 KAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSAC 407

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  +I G C +G + DA  +F  M++HGC  ++V ++AL+DG C+ G++E+A  L  +M
Sbjct: 408 TYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM 467

Query: 261 E-----------KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           E            +G +   +  +  ++++  C  G++ +A  IL ++   G APN +T 
Sbjct: 468 EIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITY 527

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           + LI GFC  GN++ A++L  ++   G       Y +L+  L+   R ++A  +  ++L 
Sbjct: 528 NILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILK 587

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLY-------------------EDIEK------ 404
           +G  P        +   C   ++   F L+                   E+ EK      
Sbjct: 588 NGCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKSVEENFEKGEVEEA 647

Query: 405 ------IGF-LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457
                 + F L+      +++ L+GLC+     EA K+   + +  + +  P   K++  
Sbjct: 648 VRGLLEMDFKLNDFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHNVLVTPPSCVKLIYR 707

Query: 458 LKKSGDEEL 466
           L K G+ +L
Sbjct: 708 LLKVGNLDL 716



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 4/224 (1%)

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + K +KR G + +  A++ L+    ++  +E+A+E   EM K+  DC P+V TY +V+ +
Sbjct: 113 VLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESF-EMMKDF-DCKPDVFTYNTVLHV 170

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
              K ++  ALGI +RM  L C PN  T S LI G C  G    A Q+ D++     + +
Sbjct: 171 MVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPN 230

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ ++  L + ++   A +LF  M   G  PD +  + ++   C  G+V E   L +
Sbjct: 231 KITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLK 290

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             EK  ++  +D   +S L+ GL R     +A    R M +  I
Sbjct: 291 YFEKDRYV--LDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNI 332



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 142/318 (44%), Gaps = 17/318 (5%)

Query: 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165
           I +NPS+ + + +         S++ M  +  LC+   L  +A  +L ++ +    P+ I
Sbjct: 469 IGRNPSLFLRLSQGANRVLDTASLQTM--VEQLCDSG-LILKAYNILMQLTDSGFAPNII 525

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            YN +I  FC+ G++  A +L K + L  L PD +TY ++I G  +A R EDA  +   +
Sbjct: 526 TYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQI 585

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
            ++GC      Y + +   CR   +  A  L  +  +        V+   SV + F  KG
Sbjct: 586 LKNGCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVL--KSVEENF-EKG 642

Query: 286 MMKEAL-GILD---RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
            ++EA+ G+L+   ++     AP  + +     G C  G L+EA ++   +     + + 
Sbjct: 643 EVEEAVRGLLEMDFKLNDFQLAPYTIWLI----GLCQAGRLEEALKIFFTLEEHNVLVTP 698

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG-GQVLEGFCLYE 400
                L+  L++   L  A ++F   +  G       C+ +++ L     +    F L  
Sbjct: 699 PSCVKLIYRLLKVGNLDLAAEIFLYTIDKGYMLMPRICNRLLKSLLRSEDKRNRAFDLLS 758

Query: 401 DIEKIGFLSSVDSDIHSV 418
            ++ +G+   +DS +H  
Sbjct: 759 RMKSLGY--DLDSHLHQT 774


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 171/329 (51%), Gaps = 8/329 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  ++KQ     + V++   +  C   V    V+ +   K     +AM +  +M     
Sbjct: 182 CDRGKLKQ----AMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGC 237

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD + YN +I+ FC++G +  A   +K +       D+I++  +++  C+ GR  DA  
Sbjct: 238 KPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMK 297

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M R GC  ++V ++ L++ +C+ G + +AL +L  M K G   +PN  ++  +IQ 
Sbjct: 298 LLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGH--TPNSRSFNPLIQG 355

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +  +  A+  L+ M + GC P+ VT + L+   C +G +D+A  ++ ++ + G   S
Sbjct: 356 FCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPS 415

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++++  L++  + + A +L  +M   G+KPD + C+ ++  L   G+V E    + 
Sbjct: 416 LISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFH 475

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            ++  GF    ++ I++ +++GLC+   +
Sbjct: 476 YLK--GFGIKPNAFIYNSIMMGLCKAQQT 502



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 133/251 (52%), Gaps = 4/251 (1%)

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC  SV    ++ N LC+K  L  +A+ VL  MP+    P++  +N +I+ FC +  + 
Sbjct: 305 KGCFPSVVTFNILINFLCQKGLLG-KALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGID 363

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A E ++ M     YPDI+TY  ++   C  G+++DA  +   +   GC+ +L++Y+ ++
Sbjct: 364 RAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVI 423

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           DG+ ++G  E A+ELL EM  +G    P+++T TSV+     +G + EA+     ++  G
Sbjct: 424 DGLLKVGKAELAVELLEEMCYKG--LKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFG 481

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN    ++++ G C       A   +  +VA G   +   Y++L+  +      +EA 
Sbjct: 482 IKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEAS 541

Query: 362 KLFSKMLASGV 372
           KL +++ + G+
Sbjct: 542 KLSNELYSRGL 552



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 9/294 (3%)

Query: 135 IFNLCEKARLAN--EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           I +LC   R     E    L  M      PD +    +IR FC+ G    A  +M  +  
Sbjct: 73  IHHLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEE 132

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
                D  +Y  +I  +C +G +E+A    +V+     A N   Y A+L  +C  G +++
Sbjct: 133 SGAVIDANSYNVLINAYCKSGEIEEA---LRVLDHTSVAPNAATYDAVLCSLCDRGKLKQ 189

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+++L    +    C P+VVT T +I   C +  + +A+ + + M   GC P+ VT + L
Sbjct: 190 AMQVLDRQLQS--KCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVL 247

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           IKGFC EG LDEA   + K+ + G  S    ++ ++  L    R  +A KL + ML  G 
Sbjct: 248 IKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGC 307

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
            P  +  +++I  LC  G + +   + E + K G   + +S   + L+ G C +
Sbjct: 308 FPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGH--TPNSRSFNPLIQGFCNR 359



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 148/322 (45%), Gaps = 39/322 (12%)

Query: 123 EGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC   V    V+    C++ RL +EA+  L+K+P +  + D I +N ++R  C  G  +
Sbjct: 235 KGCKPDVVTYNVLIKGFCKEGRL-DEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWM 293

Query: 182 AADELMKGMGLIDLYPDIITYV-----------------------------------SMI 206
            A +L+  M     +P ++T+                                     +I
Sbjct: 294 DAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLI 353

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           +GFCN   ++ A    ++M   GC  ++V Y+ LL  +C+ G ++ A+ +L ++  +G  
Sbjct: 354 QGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKG-- 411

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           CSP++++Y +VI      G  + A+ +L+ M   G  P+ +T ++++ G   EG + EA 
Sbjct: 412 CSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAI 471

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +    +   G   +   Y+S+++ L + ++   A      M+A+G KP   + + +I+ +
Sbjct: 472 KFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGI 531

Query: 387 CLGGQVLEGFCLYEDIEKIGFL 408
              G   E   L  ++   G +
Sbjct: 532 TYEGLAEEASKLSNELYSRGLV 553



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 7/230 (3%)

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G LE+     + M   G   ++VA +AL+   C++G  + A  ++G +E+ G     N  
Sbjct: 83  GELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDAN-- 140

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           +Y  +I  +C  G ++EAL +LD       APN  T   ++   C  G L +A Q++D+ 
Sbjct: 141 SYNVLINAYCKSGEIEEALRVLDHTSV---APNAATYDAVLCSLCDRGKLKQAMQVLDRQ 197

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +           + L+    +   + +A KLF++M   G KPD +  +V+I+  C  G++
Sbjct: 198 LQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRL 257

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            E     + +   G  S V S  H+++L  LC     ++A KL   ML+K
Sbjct: 258 DEAIIFLKKLPSYGCQSDVIS--HNMILRSLCSGGRWMDAMKLLATMLRK 305



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 4/189 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           I+ +E     GC   +    ++   LC+  ++ ++A+ +L ++      P  I YN VI 
Sbjct: 366 IEHLEIMVSRGCYPDIVTYNILLTALCKDGKV-DDAVVILSQLSSKGCSPSLISYNTVID 424

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
              + G    A EL++ M    L PD+IT  S++ G    G++ +A   F  +K  G   
Sbjct: 425 GLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKP 484

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y++++ G+C+      A++ L +M   G  C P   +YT++I+    +G+ +EA  
Sbjct: 485 NAFIYNSIMMGLCKAQQTSLAIDFLVDMVANG--CKPTEASYTTLIKGITYEGLAEEASK 542

Query: 293 ILDRMEALG 301
           + + + + G
Sbjct: 543 LSNELYSRG 551



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L+R   L+E  +    M   G  PD +AC+ +IRE C  G+      +   +E+ G  + 
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESG--AV 136

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKL 435
           +D++ ++VL+   C+     EA ++
Sbjct: 137 IDANSYNVLINAYCKSGEIEEALRV 161


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 197/426 (46%), Gaps = 9/426 (2%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE- 102
           ++IE  L      +  T V+EVL +   +   + + FF WA  Q  +++S+  YN   E 
Sbjct: 96  SSIESLLNGASVDVSPTLVLEVLKK-LSNSGVIALSFFRWAEKQKGFKYSTENYNALIEA 154

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP 162
           + +IKQ   +I ++V   + +G +++ +   +I     +AR   EA+    KM +F L+P
Sbjct: 155 LGKIKQF-KMIWNLVNDMRSKG-LLTQETFALISRRYARARKVKEAVETFEKMEKFGLQP 212

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
               +N ++   C+   +  A E+   M      PDI +Y  +++G+     L     ++
Sbjct: 213 VLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLLRLDEVY 272

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + MK  G   + V Y  L++  C+    + A+EL  +ME     C P    Y ++I    
Sbjct: 273 REMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKME--ANKCMPTPHIYCTLINGLG 330

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            +  + EAL   +R +A G  P   T + ++  +C    +D+AY+++D++   G      
Sbjct: 331 SERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTR 390

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
            Y  ++  L++ +R KEA ++F  M +  G +P      +++R  C   +V     ++++
Sbjct: 391 TYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDE 450

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
           ++  G L  +   + S L+  LC +N   EA K    ML   I         + + L   
Sbjct: 451 MKAKGVLPGM--HMFSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDE 508

Query: 462 GDEELI 467
           G ++++
Sbjct: 509 GKQDMV 514


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 167/335 (49%), Gaps = 16/335 (4%)

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           H  F++N+A E           + +V+   + GC  ++    V+ N LC++  + + A  
Sbjct: 198 HGLFLHNKASEA----------VALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI-DLAFN 246

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L KM    +  + +IY+ VI   C+      A  L   M    + P++ITY S+I   C
Sbjct: 247 LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLC 306

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N  R  DA  L   M       N+V ++AL+D   + G +  A +L  EM K   D  P+
Sbjct: 307 NYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSID--PD 364

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           + TY+S+I  FC    + EA  + + M +  C PN VT +TLI GFC    +DE  +L  
Sbjct: 365 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFR 424

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G V +   Y++L+    + +    A+ +F +M++ GV P+ +  + ++  LC  G
Sbjct: 425 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 484

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           ++ +   ++E +++     ++ +  +++++ G+C+
Sbjct: 485 KLEKAMVVFEYLQRSKMEPTIYT--YNIMIEGMCK 517



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 149/319 (46%), Gaps = 19/319 (5%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
           YRH     N   EM      P++I                    +I  LC   R + +A 
Sbjct: 273 YRHEDDALNLFTEMENKGVRPNVIT----------------YSSLISCLCNYERWS-DAS 315

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            +L  M E  + P+ + +N +I  F ++G ++ A++L   M    + PDI TY S+I GF
Sbjct: 316 RLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 375

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C   RL++A  +F++M    C  N+V Y+ L++G C+   ++  +EL  EM + G     
Sbjct: 376 CMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRG--LVG 433

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           N VTYT++I  F        A  +  +M + G  PN +T +TL+ G C  G L++A  + 
Sbjct: 434 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 493

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           + +       +   Y+ ++  + +  ++++   LF  +   GVKPD +  + MI   C  
Sbjct: 494 EYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRK 553

Query: 390 GQVLEGFCLYEDIEKIGFL 408
           G   E   L+  + + G L
Sbjct: 554 GLKEEADALFRKMREDGPL 572



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 166/352 (47%), Gaps = 8/352 (2%)

Query: 93  SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWV 151
           S F +N+        +   ++I + E  +  G   ++    ++ N  C +++++  A+ +
Sbjct: 84  SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQIS-LALAL 142

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           L KM +    P  +  ++++  +C    +  A  L+  M  +   PD IT+ ++I G   
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
             +  +A  L   M + GC  NLV Y  +++G+C+ G ++ A  LL +M  E      NV
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM--EAAKIEANV 260

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           V Y++VI   C      +AL +   ME  G  PN +T S+LI   C      +A +L+  
Sbjct: 261 VIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSD 320

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           ++      +   +++L+   V+  +L EAEKL+ +M+   + PD    S +I   C+  +
Sbjct: 321 MIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 380

Query: 392 VLEGFCLYE-DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           + E   ++E  I K  F + V    ++ L+ G C+     E  +L R M ++
Sbjct: 381 LDEAKHMFELMISKDCFPNVV---TYNTLINGFCKAKRIDEGVELFREMSQR 429



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 3/283 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V +  ++   C   R++ +A+ ++ +M E   RPDTI +  +I           A  L+ 
Sbjct: 156 VTLSSLLNGYCHGKRIS-DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVD 214

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P+++TY  ++ G C  G ++ A  L   M+     AN+V YS ++D +C+  
Sbjct: 215 RMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYR 274

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
             + AL L  EME +G    PNV+TY+S+I   C      +A  +L  M      PN VT
Sbjct: 275 HEDDALNLFTEMENKG--VRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVT 332

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + LI  F  EG L EA +L D+++          YSSL+       RL EA+ +F  M+
Sbjct: 333 FNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMI 392

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           +    P+ +  + +I   C   ++ EG  L+ ++ + G + + 
Sbjct: 393 SKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNT 435



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 144/299 (48%), Gaps = 26/299 (8%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+ +  + KM +FDL                   +I+  E M+ +G+     ++ TY  +
Sbjct: 89  NKLLSAIAKMKKFDL-------------------VISLGEKMQRLGISH---NLYTYNIL 126

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC   ++  A  L   M + G   ++V  S+LL+G C    +  A+ L+ +M + G 
Sbjct: 127 INCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG- 185

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P+ +T+T++I          EA+ ++DRM   GC PN VT   ++ G C  G++D A
Sbjct: 186 -YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           + L++K+ A    ++   YS+++  L + +   +A  LF++M   GV+P+ +  S +I  
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           LC   +  +   L  D+ +     +V +   + L+    ++   VEA KL   M+K+ I
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVT--FNALIDAFVKEGKLVEAEKLYDEMIKRSI 361



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 131/266 (49%), Gaps = 4/266 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P I  +  ++       + +    L + M+R G + NL  Y+ L++  CR   +  AL L
Sbjct: 83  PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           LG+M K G +  P++VT +S++  +C    + +A+ ++D+M  +G  P+ +T +TLI G 
Sbjct: 143 LGKMMKLGYE--PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGL 200

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
            +     EA  L+D++V  G   +   Y  +V  L +   +  A  L +KM A+ ++ + 
Sbjct: 201 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANV 260

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  S +I  LC      +   L+ ++E  G   +V +  +S L+  LC      +A++L 
Sbjct: 261 VIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVIT--YSSLISCLCNYERWSDASRLL 318

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSG 462
             M++++I       + +++   K G
Sbjct: 319 SDMIERKINPNVVTFNALIDAFVKEG 344



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 95/184 (51%), Gaps = 2/184 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C  +V     + N   KA+  +E + + R+M +  L  +T+ Y  +I  F +  D   A 
Sbjct: 396 CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 455

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            + K M    ++P+I+TY +++ G C  G+LE A  +F+ ++R      +  Y+ +++G+
Sbjct: 456 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 515

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G +E   +L   +  +G    P+V+ Y ++I  FC KG+ +EA  +  +M   G  P
Sbjct: 516 CKAGKVEDGWDLFCSLSLKG--VKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLP 573

Query: 305 NRVT 308
           +  T
Sbjct: 574 DSGT 577



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 39/269 (14%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  +++   ++ +L+DA GLF  M +     ++  ++ LL  I ++   +  + L  +M+
Sbjct: 53  YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQ 112

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           + G   S N+ TY  +I  FC +  +  AL +L +M  LG  P+ VT+S+L+ G+C    
Sbjct: 113 RLG--ISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYC---- 166

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
                                            KR+ +A  L  +M+  G +PD +  + 
Sbjct: 167 -------------------------------HGKRISDAVALVDQMVEMGYRPDTITFTT 195

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +I  L L  +  E   L + + + G   ++ +  + V++ GLC++     A  L   M  
Sbjct: 196 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVT--YGVVVNGLCKRGDIDLAFNLLNKMEA 253

Query: 442 KRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            +I         +++ L K   E+   NL
Sbjct: 254 AKIEANVVIYSTVIDSLCKYRHEDDALNL 282


>gi|302785283|ref|XP_002974413.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
 gi|300158011|gb|EFJ24635.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
          Length = 447

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 157/335 (46%), Gaps = 40/335 (11%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA    +A+ +L +M    +RP+ +I+  +IR  C  G +  A    + +G  D  P++ 
Sbjct: 42  KAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRIGE-DCAPNVY 100

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  ++   C +G+  +A GL   M + GC+ N+V Y+AL+DG  +L  ++  L LL EM
Sbjct: 101 TYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEM 160

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMK-------------------------------- 288
            + G  C  +V+TYT ++ IFC    +                                 
Sbjct: 161 SQRG--CRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFTALSTAEGDRT 218

Query: 289 -EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            EAL +L++M   G  PN+V   T++   C    LDEAYQ++  + + G  +    Y  L
Sbjct: 219 TEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKIL 278

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           VV      R  ++ +L  +ML SG   D    +V+I + C  G + E   L++ + + G 
Sbjct: 279 VVAFASAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMCQRG- 337

Query: 408 LSSVDSDI-HSVLLLGLCRKNHSVEAAKLARFMLK 441
             S+ S++ ++ L+   C+      A KL   M++
Sbjct: 338 --SIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQ 370



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 147/301 (48%), Gaps = 7/301 (2%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           + + Y  +++ FC+ G+   A EL+  M    + P+++ + ++I+G C AG++  A   F
Sbjct: 29  NEVSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHF 88

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           + +    CA N+  YS L+D +C+ G    A  L+ EM K+G  CSPNVVTY ++I  F 
Sbjct: 89  RRIGE-DCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKKG--CSPNVVTYNALIDGFR 145

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
               + E L +L  M   GC  + +T + ++  FC   ++DEAY+L++ +     V+   
Sbjct: 146 KLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNS 205

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            +++L        R  EA  L  KM+  G +P+ +    ++  LC   ++ E + +   +
Sbjct: 206 LFTAL--STAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSM 263

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              G     D   + +L++       + ++ +L   ML     L    ++ ++    K+G
Sbjct: 264 YSQG--CKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAG 321

Query: 463 D 463
           D
Sbjct: 322 D 322



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 128/268 (47%), Gaps = 8/268 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           ++GC  +V     + +   K    +E + +L++M +   R D I Y  ++ +FC+   + 
Sbjct: 127 KKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSID 186

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNA--GRLEDACGLFKVMKRHGCAANLVAYSA 239
            A  L+  +       +++TY S+      A   R  +A  L + M + G   N V Y  
Sbjct: 187 EAYRLLNALE----KRNVVTYNSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRT 242

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           +L  +C+   ++ A ++L  M  +G  C  + V+Y  ++  F   G   ++L +L RM  
Sbjct: 243 VLLMLCKNSRLDEAYQVLLSMYSQG--CKTDDVSYKILVVAFASAGRTYDSLELLGRMLG 300

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G   +  T++ +I  FC  G+L EA+QL   +   GS+ S   Y++L+    + ++   
Sbjct: 301 SGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDT 360

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELC 387
           A KL  +M+ +  KP+ +  + +I+  C
Sbjct: 361 AVKLLHQMIQADFKPNVITYNSIIKSFC 388



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 3/200 (1%)

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           M++ F ++ R       ++       A N V+Y  L+ G C+ G  ++ALELL EM+  G
Sbjct: 1   MLQIFVDSKRHRHGYEFYRHRLLGSYAVNEVSYGILMQGFCKAGEFQQALELLDEMKSNG 60

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PNVV +T++I+  C  G + +AL    R+    CAPN  T S L+   C  G   E
Sbjct: 61  --VRPNVVIHTTIIRGLCTAGKVSQALLHFRRI-GEDCAPNVYTYSILVDALCKSGQPHE 117

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           AY L+ ++V  G   +   Y++L+    + +RL E   L  +M   G + D +  ++++ 
Sbjct: 118 AYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILD 177

Query: 385 ELCLGGQVLEGFCLYEDIEK 404
             C    + E + L   +EK
Sbjct: 178 IFCKNNSIDEAYRLLNALEK 197



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 62/117 (52%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G ++  K M V+ +   KA   +EA  + + M +    P  + YN +I  FC+      A
Sbjct: 302 GYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDTA 361

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
            +L+  M   D  P++ITY S+IK FC   R E+A G+F++M   GC  + V+Y+ L
Sbjct: 362 VKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDSGCFPDRVSYTTL 418



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 91/180 (50%), Gaps = 3/180 (1%)

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           G  + N V+Y  ++Q FC  G  ++AL +LD M++ G  PN V  +T+I+G C  G + +
Sbjct: 24  GSYAVNEVSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQ 83

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  L  + +      +   YS LV  L ++ +  EA  L ++M+  G  P+ +  + +I 
Sbjct: 84  AL-LHFRRIGEDCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALID 142

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
                 ++ E   L +++ + G  + V +  ++++L   C+ N   EA +L   + K+ +
Sbjct: 143 GFRKLERLDEVLMLLKEMSQRGCRADVIT--YTMILDIFCKNNSIDEAYRLLNALEKRNV 200


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 174/373 (46%), Gaps = 38/373 (10%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V +V + ++I  LC+  R  +    V R+MPE    PD   YN +I+  C +     A E
Sbjct: 124 VQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALE 183

Query: 186 LMKGM---GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           L+  M   G  +  P++++Y ++I GF   G ++ A  LF  M   G   ++V Y++L+D
Sbjct: 184 LLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLID 243

Query: 243 GICRLGSMERALELLGEMEKEG-------------GDCS--------------------P 269
           G+C+  +M++A+ +L  M  +G             G CS                    P
Sbjct: 244 GLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQP 303

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +VVTY+ +IQ +C  G   EA  + D M   G  PN      L+ G+  +G L +   L+
Sbjct: 304 DVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLL 363

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           D ++  G       ++ L+    +   + +A   F++M  +G++PD ++ S +I  LC  
Sbjct: 364 DLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKT 423

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449
           G+V +    +  +   G   ++ S   + L+ GLC      +  +LA  M+ + I     
Sbjct: 424 GRVEDAVYHFNQMVSEGLSPNIIS--FTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAI 481

Query: 450 YVDKIVEHLKKSG 462
           +++ I+++L K G
Sbjct: 482 FMNTIMDNLCKEG 494



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 165/346 (47%), Gaps = 40/346 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KA+  ++A+ +L+ M +  + PDT  YN +IR +C  G +  A  L+K M   
Sbjct: 241 LIDGLC-KAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGS 299

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG---------- 243
            L PD++TY  +I+ +C  GR  +A  +F  M R G   N   Y  LL G          
Sbjct: 300 GLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDV 359

Query: 244 ----------------------IC---RLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
                                 IC   + G++++A+    EM + G    P+VV+Y++VI
Sbjct: 360 RDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNG--LRPDVVSYSTVI 417

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
            I C  G +++A+   ++M + G +PN ++ ++LI G C  G   +  +L  +++  G  
Sbjct: 418 HILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIH 477

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                 ++++  L +  R+ EA+  F  ++  GVKPD ++ + +I   C  G++ E    
Sbjct: 478 PDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQ 537

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            + +  IG     DS  ++ LL G  +     +A  L R M +K +
Sbjct: 538 LDRMVSIGLRP--DSWTYNSLLNGYFKNGRVEDALALYREMFRKDV 581



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 165/359 (45%), Gaps = 40/359 (11%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-------- 190
           C+  R A EA  V   M     +P++ IY+ ++  +  KG +I   +L+  M        
Sbjct: 316 CKIGRCA-EARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFE 374

Query: 191 --------------GLID-------------LYPDIITYVSMIKGFCNAGRLEDACGLFK 223
                         G +D             L PD+++Y ++I   C  GR+EDA   F 
Sbjct: 375 HRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFN 434

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M   G + N++++++L+ G+C +G  ++  EL  EM   G    P+ +   +++   C 
Sbjct: 435 QMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRG--IHPDAIFMNTIMDNLCK 492

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
           +G + EA    D +  +G  P+ V+ +TLI G+C  G +DE+ + +D++V+ G       
Sbjct: 493 EGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWT 552

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+SL+    +  R+++A  L+ +M    VK   +  ++M+  L   G+++    LY  + 
Sbjct: 553 YNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMV 612

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
             G  + +  + ++ +L GLC  +   EA ++   +  K   L       ++  L K G
Sbjct: 613 DRG--TQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVG 669



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 143/293 (48%), Gaps = 16/293 (5%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A ++  +M    L PD + YN++I   C+   M  A  +++ M    + PD  TY  M
Sbjct: 217 DKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIM 276

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I+G+C+ G+LE+A  L K M   G   ++V YS L+   C++G    A  +   M ++G 
Sbjct: 277 IRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQ 336

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PN   Y  ++  +  KG + +   +LD M   G        + LI  +   G +D+A
Sbjct: 337 --KPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKA 394

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
                ++   G       YS+++  L +T R+++A   F++M++ G+ P+ ++ + +I  
Sbjct: 395 MTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHG 454

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH------SVLLLGLCRKNHSVEA 432
           LC  G+       ++ +E++ F   ++  IH      + ++  LC++   VEA
Sbjct: 455 LCSIGE-------WKKVEELAF-EMINRGIHPDAIFMNTIMDNLCKEGRVVEA 499



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 129/280 (46%), Gaps = 39/280 (13%)

Query: 205 MIKGFCNAGRL-----------------------------------EDACGL-FKVMKRH 228
           +I+ FC  GRL                                   +DA  + F+ M   
Sbjct: 97  LIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPEL 156

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG-DCSPNVVTYTSVIQIFCGKGMM 287
           G   ++ +Y+AL+ G+C     + ALELL  M  +GG +CSPNVV+Y +VI  F  +G +
Sbjct: 157 GYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEV 216

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            +A  +   M   G  P+ VT ++LI G C    +D+A  ++  +   G +     Y+ +
Sbjct: 217 DKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIM 276

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +       +L+EA +L  KM  SG++PD +  S++I+  C  G+  E   +++ + + G 
Sbjct: 277 IRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKG- 335

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
               +S I+ +LL G   K   ++   L   M++  I  +
Sbjct: 336 -QKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFE 374



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 139/304 (45%), Gaps = 5/304 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++ M  ++ NLC++ R+  EA      +    ++PD + YN +I  +C  G M  + + +
Sbjct: 480 AIFMNTIMDNLCKEGRVV-EAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQL 538

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M  I L PD  TY S++ G+   GR+EDA  L++ M R       +  + +L G+ + 
Sbjct: 539 DRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQA 598

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +  A EL  +M   G      + TY +V+   C    + EAL + + + +     +  
Sbjct: 599 GRIVAARELYMKMVDRGTQL--RIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVR 656

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S +I      G +DEA  L   +V  G V     YS ++   +    L+E++ LF  M
Sbjct: 657 TFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSM 716

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
             +G   D    ++++R L   G V         I++  F  S+++   ++L+  +  K 
Sbjct: 717 EKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNF--SLEASTAALLIPIVSEKK 774

Query: 428 HSVE 431
           +  E
Sbjct: 775 YQKE 778



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 150/333 (45%), Gaps = 40/333 (12%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC+  R+  +A++   +M    L P+ I + ++I   C  G+    +EL  
Sbjct: 411 VSYSTVIHILCKTGRV-EDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAF 469

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    ++PD I   +++   C  GR+ +A   F ++   G   ++V+Y+ L+DG C +G
Sbjct: 470 EMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVG 529

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCA-- 303
            M+ +++ L  M   G    P+  TY S++  +   G +++AL +   M   +   CA  
Sbjct: 530 KMDESIKQLDRMVSIG--LRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAIT 587

Query: 304 ----------PNRV--------------------TISTLIKGFCVEGNLDEAYQLIDKVV 333
                       R+                    T +T++ G C    +DEA ++ + + 
Sbjct: 588 SNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLR 647

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
           +         +S ++  L++  R+ EA+ LFS M+  G  PD +  S+MI+     G + 
Sbjct: 648 SKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLE 707

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           E   L+  +EK G   + DS + ++++  L  K
Sbjct: 708 ESDNLFLSMEKNG--CAADSHMLNIIVRRLLEK 738


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 145/275 (52%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  +  N ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA   F  M   G   N V ++ L+DG C+ G ++ A E+  +M  +    
Sbjct: 221 GLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQS--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+LD A++
Sbjct: 279 LPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+  +KPD    +++I E C
Sbjct: 339 HRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G  L +++++ G   SV +  ++VL+ G
Sbjct: 399 KKGDVWKGSKLLKEMQRDGHAPSVVT--YNVLMNG 431



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 129/274 (47%), Gaps = 15/274 (5%)

Query: 196 YPDIITYVS-MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           YP  + + + ++  FC  G +  A  +F  + + G   ++V+ + L++G  RLG ++   
Sbjct: 138 YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGF 197

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L   M   G    P+V TY+ +I   C +  M +A    D M   G  PN VT +TLI 
Sbjct: 198 RLKSVMLASG--VQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLID 255

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G C  G +D A ++  ++++   +     Y++L+  L +   LK+A  L   M   G+KP
Sbjct: 256 GHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKP 315

Query: 375 DGLACSVMIRELCLGGQVLEGF-----CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           D +  + +I   C  G +   F      + E+I        +D  +++ L+ GLC++  S
Sbjct: 316 DKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIR-------LDDVVYTALISGLCQEGRS 368

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V+A K+ R ML  R+         I+    K GD
Sbjct: 369 VDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGD 402



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 96/187 (51%), Gaps = 3/187 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  R+ + A  + ++M    L PD I YN +I   C+KGD+  A +L+ 
Sbjct: 248 VTFTTLIDGHCKNGRV-DLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLID 306

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  L PD ITY ++I G C  G L+ A    K M +     + V Y+AL+ G+C+ G
Sbjct: 307 DMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEG 366

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A ++L EM        P+  TYT +I  FC KG + +   +L  M+  G AP+ VT
Sbjct: 367 RSVDAEKMLREMLSV--RLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 424

Query: 309 ISTLIKG 315
            + L+ G
Sbjct: 425 YNVLMNG 431



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 6/144 (4%)

Query: 101 CEMSRIKQNPSIIIDV-VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C+   +KQ   +I D+ ++  K +     +    +I   C++  L + A    ++M + +
Sbjct: 293 CKKGDLKQAHDLIDDMSMKGLKPD----KITYTTLIBGCCKEGDL-DSAFEHRKRMIQEN 347

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +R D ++Y  +I   C++G  + A+++++ M  + L PD  TY  +I  FC  G +    
Sbjct: 348 IRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGS 407

Query: 220 GLFKVMKRHGCAANLVAYSALLDG 243
            L K M+R G A ++V Y+ L++G
Sbjct: 408 KLLKEMQRDGHAPSVVTYNVLMNG 431



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 108/266 (40%), Gaps = 39/266 (14%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L   +      
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFY 130

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ + G   S  +  +  ++  FC  G ++ A  + D +   G  P+ V+ +TL+ G+ 
Sbjct: 131 EEILECGYPAS--LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYI 188

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+LDE +                             RLK      S MLASGV+PD  
Sbjct: 189 RLGDLDEGF-----------------------------RLK------SVMLASGVQPDVY 213

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             SV+I  LC   ++ +    ++++   G +   +    + L+ G C+      A ++ +
Sbjct: 214 TYSVLINGLCKESKMDDANEXFDEMLVKGLVP--NGVTFTTLIDGHCKNGRVDLAKEIYK 271

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSGD 463
            ML + +       + ++  L K GD
Sbjct: 272 QMLSQSLLPDLITYNTLIYGLCKKGD 297


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 135/278 (48%), Gaps = 5/278 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +  + ++ +M      PD   YN +I   C+ G +   + L   M      PD+ITY  +
Sbjct: 27  DSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCL 86

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I GFC   R+  AC LF  M +     ++V +  L++G C  G ++ A  LL E+     
Sbjct: 87  IGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIV--AS 144

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           DCSP+V TYTS++  FC    M EA  +L RM    C PN V  + LI  FC  G    A
Sbjct: 145 DCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVA 204

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-GVKPDGLACSVMIR 384
           Y+L++++V  G   +   Y SL+     T  L+EA K+  ++  +   K D  A  VM+ 
Sbjct: 205 YKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMD 264

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
            LC  G++     L E I++ G  +    DI+  L+ G
Sbjct: 265 GLCRTGRMSAALELLEAIKQSG--TPPRHDIYVALIRG 300



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 143/281 (50%), Gaps = 3/281 (1%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M  + + P+ + YN++I  FC    + +   LM+ M      PDI TY ++I G C  GR
Sbjct: 1   MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGR 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           + +   LF  MK   C  +++ YS L+ G C+L  +  A  L  +M K+     P+VVT+
Sbjct: 61  VPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAA--LPDVVTF 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            ++++ +C  G++ +A  +L+ + A  C+P+  T ++L+ GFC    + EA++++ ++  
Sbjct: 119 PTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAK 178

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
           G    +   Y++L+       +   A KL  +M+ +GV+P+ +    +I   C  G + E
Sbjct: 179 GECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEE 238

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
              + E +E+       D   + V++ GLCR      A +L
Sbjct: 239 AHKMLERLER-NENCKADMFAYRVMMDGLCRTGRMSAALEL 278



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 136/261 (52%), Gaps = 5/261 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++E     GC+  +     + + LC+  R+  E   +  +M      PD I Y+ +I  F
Sbjct: 32  LMEEMTATGCLPDINTYNTLIDGLCKTGRVP-EVNRLFGEMKAKFCNPDVITYSCLIGGF 90

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+   +  A  L   M      PD++T+ ++++G+CNAG ++DA  L + +    C+ ++
Sbjct: 91  CKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDV 150

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             Y++L+DG C++  M  A  +L  M K  G+C PNVV YT++I  FC  G    A  +L
Sbjct: 151 YTYTSLVDGFCKVKRMVEAHRVLKRMAK--GECQPNVVIYTALIDAFCSAGKPTVAYKLL 208

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG-CYSSLVVELVR 353
           + M   G  PN +T  +LI GFC  G+L+EA+++++++    +  +    Y  ++  L R
Sbjct: 209 EEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLCR 268

Query: 354 TKRLKEAEKLFSKMLASGVKP 374
           T R+  A +L   +  SG  P
Sbjct: 269 TGRMSAALELLEAIKQSGTPP 289



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 21/193 (10%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C+  R+  EA  VL++M + + +P+ +IY  +I  FC  G    A +L++ M    + P
Sbjct: 160 FCKVKRMV-EAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQP 218

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAANLVAYSALLDGICRLGSMERALEL 256
           + ITY S+I GFC  G LE+A  + + ++R+  C A++ AY  ++DG+CR G M  ALEL
Sbjct: 219 NAITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLCRTGRMSAALEL 278

Query: 257 LGEMEKEG-------------GDCS------PNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           L  +++ G             G+ +      PN   Y +VIQ    +G  ++A  + D +
Sbjct: 279 LEAIKQSGTPPRHDIYVALIRGEMTLSRKGRPNAKVYEAVIQELAREGRHEKANALSDEL 338

Query: 298 EALGCAPNRVTIS 310
                +  R  I+
Sbjct: 339 LGNKASKTRFVIT 351



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 125/270 (46%), Gaps = 19/270 (7%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++ RI    ++  D++   K+      V    ++   C  A L ++A  +L ++   D 
Sbjct: 91  CKLDRINMACTLFDDML---KQAALPDVVTFPTLVEGYC-NAGLVDDAERLLEEIVASDC 146

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   Y +++  FC+   M+ A  ++K M   +  P+++ Y ++I  FC+AG+   A  
Sbjct: 147 SPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYK 206

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L + M  +G   N + Y +L+ G C  G +E A ++L  +E+   +C  ++  Y  ++  
Sbjct: 207 LLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLER-NENCKADMFAYRVMMDG 265

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G M  AL +L+ ++  G  P       LI+G   E  L    +   KV        
Sbjct: 266 LCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRG---EMTLSRKGRPNAKV-------- 314

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
              Y +++ EL R  R ++A  L  ++L +
Sbjct: 315 ---YEAVIQELAREGRHEKANALSDELLGN 341


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 133/266 (50%), Gaps = 2/266 (0%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           KE G   S +    + +   + R A EA  +L++M E  L P  +    VI  +C++G M
Sbjct: 103 KELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRM 162

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  +++ M L    P++ TY ++++GFCN G++  A  L   M+  G   + V Y+ L
Sbjct: 163 SDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLL 222

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G C  G +E A  LL  ME +G     +  TY ++I   C  G   +A  + D +E  
Sbjct: 223 IRGQCIDGHIESAFRLLRLMEGDG--LIADQYTYNALINALCKDGRTDQACSLFDSLETR 280

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  PN VT ++LI G C  G  D A++ ++K+V+ G       YSS +  L + K  +E 
Sbjct: 281 GIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEG 340

Query: 361 EKLFSKMLASGVKPDGLACSVMIREL 386
                +ML   VKP  +  +++I +L
Sbjct: 341 LSFIGEMLQKDVKPSTVNYTIVIHKL 366



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 155/324 (47%), Gaps = 39/324 (12%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           KMP      D + Y  +I   CE G +   DE ++  G +D  PD+  Y +++KG CNA 
Sbjct: 35  KMPLRGFAQDVVSYATLIEGLCEAGRI---DEAVELFGEMD-QPDMHMYAALVKGLCNAE 90

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--------- 264
           R E+   + + MK  G   +  AY+A++D  CR    + A E+L EM ++G         
Sbjct: 91  RGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCT 150

Query: 265 ------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
                                     C PNV TY +++Q FC +G + +A+ +L++M A 
Sbjct: 151 AVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRAC 210

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P+ VT + LI+G C++G+++ A++L+  +   G ++    Y++L+  L +  R  +A
Sbjct: 211 GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQA 270

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
             LF  +   G+KP+ +  + +I  LC  G+    +   E +   G   + D+  +S  +
Sbjct: 271 CSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG--CTPDTYTYSSFI 328

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
             LC+   S E       ML+K +
Sbjct: 329 EHLCKMKGSQEGLSFIGEMLQKDV 352



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 157/313 (50%), Gaps = 10/313 (3%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           CVV+     VI   C++ R++ +A+ VL  M     +P+   YN +++ FC +G +  A 
Sbjct: 145 CVVTCT--AVINAYCKEGRMS-DALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAM 201

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L+  M    + PD +TY  +I+G C  G +E A  L ++M+  G  A+   Y+AL++ +
Sbjct: 202 TLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINAL 261

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G  ++A  L   +E  G    PN VT+ S+I   C  G    A   L++M + GC P
Sbjct: 262 CKDGRTDQACSLFDSLETRG--IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTP 319

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           +  T S+ I+  C      E    I +++      S   Y+ ++ +L++ +      + +
Sbjct: 320 DTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTW 379

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG-- 422
            +M++SG  PD +  +  +R  C+ G++ E   +  ++ K G   +VD+  ++ L+ G  
Sbjct: 380 GEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGV--TVDTMAYNTLMDGHA 437

Query: 423 -LCRKNHSVEAAK 434
            + + +H+V   K
Sbjct: 438 SIGQTDHAVSILK 450



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 31/299 (10%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD  T+ S+I G+C   +++ A  LF  M   G A ++V+Y+ L++G+C  G ++ A+EL
Sbjct: 8   PDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVEL 67

Query: 257 LGEMEKEG---------GDCS--------------------PNVVTYTSVIQIFCGKGMM 287
            GEM++           G C+                    P+   Y +V+   C +   
Sbjct: 68  FGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKA 127

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           KEA  +L  M   G AP  VT + +I  +C EG + +A ++++ +   G   +   Y++L
Sbjct: 128 KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNAL 187

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           V       ++ +A  L +KM A GV PD +  +++IR  C+ G +   F L   +E  G 
Sbjct: 188 VQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGL 247

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
           ++  D   ++ L+  LC+   + +A  L   +  + I       + ++  L KSG  ++
Sbjct: 248 IA--DQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADI 304



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 141/312 (45%), Gaps = 22/312 (7%)

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           I +LC K + + E +  + +M + D++P T+ Y  VI    ++ +          M    
Sbjct: 328 IEHLC-KMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSG 386

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             PD++TY + ++ +C  GRL +A  +   M ++G   + +AY+ L+DG   +G  + A+
Sbjct: 387 CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAV 446

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL-----------------GILDRM 297
            +L +M        PN  TY  +++      ++++ L                 G+ D M
Sbjct: 447 SILKQMTSVAS--VPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVM 504

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           +     PN  T S++++GF  +G  +EA  L+  +       +   Y++LV    ++KR 
Sbjct: 505 KKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRY 564

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
            +A  L   M+  G  P  ++   ++  L   GQ  +   ++ +     +  S D  +  
Sbjct: 565 LDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDY--SPDEIVWK 622

Query: 418 VLLLGLCRKNHS 429
           V++ GL +K HS
Sbjct: 623 VIIDGLIKKGHS 634



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 138/314 (43%), Gaps = 23/314 (7%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R  ++A  +   +    ++P+ + +N++I   C+ G    A + ++ M   
Sbjct: 257 LINALCKDGR-TDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSA 315

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  TY S I+  C     ++       M +     + V Y+ ++  + +  +    
Sbjct: 316 GCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLV 375

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
               GEM   G  C+P+VVTYT+ ++ +C +G + EA  +L  M   G   + +  +TL+
Sbjct: 376 ARTWGEMVSSG--CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 433

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G    G  D A  ++ ++ +  SV +   Y  L+  LVR + +++   L          
Sbjct: 434 DGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPL---------T 484

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P G+  ++ + ++         F L++ ++K  FL   +S  +S +L G      + EA 
Sbjct: 485 PAGVWKAIELTDV---------FGLFDVMKKNEFLP--NSGTYSSILEGFSEDGRTEEAT 533

Query: 434 KLARFMLKKRIWLQ 447
            L   M +  I L 
Sbjct: 534 SLVSLMKEDSISLN 547



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 6/162 (3%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--GLIDLYPDIITYVSMIKGFCNA 212
           M + +  P++  Y++++  F E G    A  L+  M    I L  DI  Y +++  FC +
Sbjct: 504 MKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDI--YTALVTCFCKS 561

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            R  DA  L   M +HG    L++Y  LL G+   G  ++A E+   M     D SP+ +
Sbjct: 562 KRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIF--MNSRWKDYSPDEI 619

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            +  +I     KG    +  ++  +E + C P+  T + L +
Sbjct: 620 VWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTE 661



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P+  T ++LI G+C    +D A  L DK+   G       Y++L+  L    R+ EA
Sbjct: 5   GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEA 64

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +LF +M     +PD    + +++ LC   +  EG  +   ++++G+  S  +  ++ ++
Sbjct: 65  VELFGEM----DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRA--YAAVV 118

Query: 421 LGLCRKNHSVEAAKLARFMLKK 442
              CR+  + EA ++ + M +K
Sbjct: 119 DFRCRERKAKEAEEMLQEMFEK 140


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 180/390 (46%), Gaps = 49/390 (12%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRK 154
           + N  C ++R+    S++  +++     GC   +     +I  LC + ++  EA+ +  K
Sbjct: 115 LINSFCHLNRVNFAFSVLAKILKL----GCQPDTASFTTLIKGLCLEGQIG-EALHLFDK 169

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M     +PD +IY  +I   C+ G   AA  L++ M   +  PD++ Y ++I   C   +
Sbjct: 170 MIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQ 229

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME------------- 261
              A  LF  M   G + N+V  ++L+  +C LG  +    LL EM              
Sbjct: 230 QTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTT 289

Query: 262 ------KEG--------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
                 KEG                  P+VVTYT++I   C +  M EA+ + D M   G
Sbjct: 290 VVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKG 349

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           CAPN  + +TLI G+C    +D+A  L +++     + +   Y++L+  L    RL++A 
Sbjct: 350 CAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAI 409

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVL 419
            LF +M+A G  PD +   +++  LC    + +   L + IE     S++D D  I++++
Sbjct: 410 ALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEG----SNLDPDIQIYTIV 465

Query: 420 LLGLCRKNHSVEA----AKLARFMLKKRIW 445
           + G+CR     +A    + L+   LK  +W
Sbjct: 466 IDGMCRAGELEDARDLFSNLSSKGLKPNVW 495



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 157/305 (51%), Gaps = 11/305 (3%)

Query: 144 LANEAMW-----VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           L N   W     +L +M +  + P+ I    V+   C++G +  A +++  M    + PD
Sbjct: 259 LCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPD 318

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++TY ++I G C    +++A  +F +M   GCA N+ +Y+ L++G C++  M++A+ L  
Sbjct: 319 VVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFE 378

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM ++     PN VTY ++I   C  G +++A+ +   M A G  P+ VT   L+   C 
Sbjct: 379 EMCRQ--KLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCK 436

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE-LVRTKRLKEAEKLFSKMLASGVKPDGL 377
             +LD+A  L+ K + G ++       ++V++ + R   L++A  LFS + + G+KP+  
Sbjct: 437 NCHLDKAMALL-KAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVW 495

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             ++M   LC  G + E   L+ ++++     S D   ++ +  G  R N +  A +L  
Sbjct: 496 TYNIMTHGLCKRGLLDEATKLFMEMDENA--CSADGCTYNTITQGFLRNNETSRAIQLLE 553

Query: 438 FMLKK 442
            ML +
Sbjct: 554 EMLAR 558



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 155/346 (44%), Gaps = 41/346 (11%)

Query: 128 SVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           +V  + V+ N  C   R+ N A  VL K+ +   +PDT  +  +I+  C +G +  A  L
Sbjct: 108 NVYTLNVLINSFCHLNRV-NFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHL 166

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
              M      PD++ Y ++I G C  G    A  L + M++  C  ++V Y  L+  +C+
Sbjct: 167 FDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCK 226

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVT--------------------------------- 273
                +A  L  EM  +G   SPN+VT                                 
Sbjct: 227 DRQQTQAFNLFSEMITKG--ISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNA 284

Query: 274 --YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
              T+V+   C +GM+ +A  ++D M   G  P+ VT + LI G C+   +DEA ++ D 
Sbjct: 285 ISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDM 344

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +V  G   +   Y++L+    + +R+ +A  LF +M    + P+ +  + +I  LC  G+
Sbjct: 345 MVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGR 404

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           + +   L+ ++   G +   D   + +LL  LC+  H  +A  L +
Sbjct: 405 LQDAIALFREMVACGQIP--DLVTYRILLDYLCKNCHLDKAMALLK 448



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 148/317 (46%), Gaps = 26/317 (8%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS----VKMM------------- 132
           ++H + + N   + S+I  N   +  VV+A  +EG V      V MM             
Sbjct: 265 WKHVNTLLNEMVD-SKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYT 323

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
            +I   C ++ + +EA+ V   M      P+   YN +I  +C+   M  A  L + M  
Sbjct: 324 ALIDGHCLRSEM-DEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCR 382

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             L P+ +TY ++I G C+ GRL+DA  LF+ M   G   +LV Y  LLD +C+   +++
Sbjct: 383 QKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDK 442

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A+ LL  +E  G +  P++  YT VI   C  G +++A  +   + + G  PN  T + +
Sbjct: 443 AMALLKAIE--GSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIM 500

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
             G C  G LDEA +L  ++      + G  Y+++    +R      A +L  +MLA   
Sbjct: 501 THGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLAR-- 558

Query: 373 KPDGLACSVMIRELCLG 389
              G +C V    L +G
Sbjct: 559 ---GFSCDVSTTTLLVG 572



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 141/292 (48%), Gaps = 4/292 (1%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           RKM  F +  +    N +I  FC    +  A  ++  +  +   PD  ++ ++IKG C  
Sbjct: 98  RKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLE 157

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G++ +A  LF  M   G   ++V Y+ L++G+C+ G    A+ LL  MEK  G+C P+VV
Sbjct: 158 GQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEK--GNCQPDVV 215

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
            Y ++I   C      +A  +   M   G +PN VT ++L+   C  G       L++++
Sbjct: 216 VYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEM 275

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           V    + +    +++V  L +   + +A  +   M  SGV+PD +  + +I   CL  ++
Sbjct: 276 VDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEM 335

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            E   +++ +   G   +V S  ++ L+ G C+     +A  L   M ++++
Sbjct: 336 DEAVKVFDMMVHKGCAPNVFS--YNTLINGYCKIERMDKAMYLFEEMCRQKL 385



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 119/248 (47%), Gaps = 3/248 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V +    +GC  +V     + N   K    ++AM++  +M    L P+T+ YN +I  
Sbjct: 339 VKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHG 398

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G +  A  L + M      PD++TY  ++   C    L+ A  L K ++      +
Sbjct: 399 LCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPD 458

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+ ++DG+CR G +E A +L   +  +G    PNV TY  +    C +G++ EA  +
Sbjct: 459 IQIYTIVIDGMCRAGELEDARDLFSNLSSKG--LKPNVWTYNIMTHGLCKRGLLDEATKL 516

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M+   C+ +  T +T+ +GF        A QL+++++A G  S     ++L+V ++ 
Sbjct: 517 FMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARG-FSCDVSTTTLLVGMLS 575

Query: 354 TKRLKEAE 361
              L ++E
Sbjct: 576 DDGLDQSE 583



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 4/254 (1%)

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           + +   L+DA   F  M       ++V ++ +L  I ++      L L  +M+  G    
Sbjct: 49  YLHFNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFG--IP 106

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
            NV T   +I  FC    +  A  +L ++  LGC P+  + +TLIKG C+EG + EA  L
Sbjct: 107 HNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHL 166

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            DK++  G       Y++L+  L +T     A +L   M     +PD +    +I  LC 
Sbjct: 167 FDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCK 226

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
             Q  + F L+ ++   G   ++ +   + L+  LC          L   M+  +I    
Sbjct: 227 DRQQTQAFNLFSEMITKGISPNIVT--CNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNA 284

Query: 449 PYVDKIVEHLKKSG 462
             +  +V+ L K G
Sbjct: 285 ISLTTVVDALCKEG 298



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 11/193 (5%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   L ++AM +L+ +   +L PD  IY  VI   C  G++  A +L   +    L P
Sbjct: 434 LCKNCHL-DKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKP 492

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           ++ TY  M  G C  G L++A  LF  M  + C+A+   Y+ +  G  R     RA++LL
Sbjct: 493 NVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLL 552

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGM-MKEALGILDRMEALGCAPNRVTISTLIKGF 316
            EM   G  C  +V T T ++ +    G+   EA  + D    L     R+ +   +  F
Sbjct: 553 EEMLARGFSC--DVSTTTLLVGMLSDDGLDQSEAHKLEDMFPHL-----RIQVKDTV--F 603

Query: 317 CVEGNLDEAYQLI 329
           C E +++   ++I
Sbjct: 604 CKEDDINALGKVI 616


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 156/323 (48%), Gaps = 12/323 (3%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A   L  M E +  PD   Y  +I  FC+ G + +A      M    + P+  TY +M
Sbjct: 459 NNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAM 518

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G+C  G+++ A  LF+ M+ +GC+A++  Y+A++ G+ +      A +   +M ++G 
Sbjct: 519 IDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQG- 577

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PN +TYTS+I   C       A  I   ME   C PN  T ++LI G C EG +D A
Sbjct: 578 -LQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAA 636

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIR 384
               +++   G   +   YS+LV  L R  R  EA +L   M   G+ P   + CS+++ 
Sbjct: 637 ----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVA 692

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             C   +V     ++  +   GF   +   I+ VL+  LC  + + EA  + + +LKK+ 
Sbjct: 693 H-CKSLKVDCALEIFNLMAVKGFQPHLF--IYKVLICALCGVSRAEEALNIFQSLLKKQ- 748

Query: 445 WLQGPYVDKI-VEHLKKSGDEEL 466
           W     V  + V+ L + GD +L
Sbjct: 749 WNSDLIVWTVLVDGLLQEGDSDL 771



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 175/412 (42%), Gaps = 68/412 (16%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVL 152
           S + N  C   RI +     +D++E   E+G   +V    V I +LC+  R+ ++A+ ++
Sbjct: 271 STLINGLCNEGRIGE----AMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRV-DDAINLV 325

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           R M +    P    Y  +I      G M  A  +   M    L P+ +TY ++I   C  
Sbjct: 326 RSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTE 385

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-------- 264
           GR   A  +F  M+ HG  AN   Y+ ++ G+  +  +E+A+ +  +M K+G        
Sbjct: 386 GRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTY 445

Query: 265 -------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
                                     +C P+  TY  +I  FC  G +  A      M  
Sbjct: 446 NTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLK 505

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G +PN+ T + +I G+C EG +D A  L +++   G  +S   Y++++  L +  R  E
Sbjct: 506 CGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSE 565

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS------ 413
           AEK  +KM   G++P+ +  + +I  LC        F ++ ++EK   L +  +      
Sbjct: 566 AEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIY 625

Query: 414 -----------------------DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
                                  D +S L+ GLCR+  S EA++L   M +K
Sbjct: 626 GLCQEGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEK 677



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 33/259 (12%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++P  + +N +I + C+KG +  A  +   +   DL PD  TY S+I G C   +L+ A 
Sbjct: 193 VKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAF 252

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD------------- 266
            +F  M + GC  N V YS L++G+C  G +  A+++L EM ++G +             
Sbjct: 253 EVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSL 312

Query: 267 --------------------CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
                               CSP+V TYT++I      G M+ A+G+  +M   G  PN 
Sbjct: 313 CDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNT 372

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT + LI   C EG    A ++ D +   G++++   Y+ ++  L     +++A  +F+K
Sbjct: 373 VTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNK 432

Query: 367 MLASGVKPDGLACSVMIRE 385
           ML  G  P  +  + +I E
Sbjct: 433 MLKDGPSPTVVTYNTLIVE 451



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 189/397 (47%), Gaps = 33/397 (8%)

Query: 73  QSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132
            +   ++FF W + +  Y+H     +  C +S + +   ++ D + A  +    V + M+
Sbjct: 83  NTDTALQFFYWISKRHFYKH-----DMGCFVSMLNR---LVKDKILAPADH---VRILMI 131

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFD--LRPDTIIYNNVIRLFCEKGDMI-AADELMKG 189
           K   N  E  R+ +     L  +   D  L   T+   N + L   K DM+ +A  +   
Sbjct: 132 KACRNEDELKRVTD----FLHGISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQ 187

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           +    + P ++T+ +MI   C  G++++A  +F  + +     +   Y++L+ G CR   
Sbjct: 188 IFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRK 247

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           +++A E+   M K+G  C+PN VTY+++I   C +G + EA+ +L+ M   G  P   T 
Sbjct: 248 LDKAFEVFDRMVKDG--CNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTY 305

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           +  I   C  G +D+A  L+  +   G   S   Y++++  L R  +++ A  ++ KML 
Sbjct: 306 TVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLK 365

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            G+ P+ +  + +I ELC  G+      +++ +E  G L+  ++  ++ ++ GL   +  
Sbjct: 366 EGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLA--NAQTYNQIIKGLFGMDDI 423

Query: 430 VEAAKLARFMLKKRIWLQGP------YVDKIVEHLKK 460
            +A  +   MLK      GP      Y   IVE+LK+
Sbjct: 424 EKAMVVFNKMLK-----DGPSPTVVTYNTLIVENLKR 455



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 37/245 (15%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + + + E  +E GC  S++    I +   K    +EA     KM E  L+P+TI Y ++I
Sbjct: 530 VALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLI 589

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
              C+      A ++   M   +  P+  TY S+I G C  G+++ A    + +  +GC 
Sbjct: 590 NGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAA----ERLTENGCE 645

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEG--------------------GDCS--- 268
             +  YS L+ G+CR G    A +L+  M+++G                     DC+   
Sbjct: 646 PTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEI 705

Query: 269 ----------PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
                     P++  Y  +I   CG    +EAL I   +       + +  + L+ G   
Sbjct: 706 FNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQ 765

Query: 319 EGNLD 323
           EG+ D
Sbjct: 766 EGDSD 770



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           +D  E   E GC  ++     + + LC + R +NEA  ++  M E  L P   IY +++ 
Sbjct: 633 VDAAERLTENGCEPTIDTYSTLVSGLCREGR-SNEASQLVENMKEKGLSPSMEIYCSLLV 691

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C+   +  A E+   M +    P +  Y  +I   C   R E+A  +F+ + +    +
Sbjct: 692 AHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNS 751

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +L+ ++ L+DG+ + G  +  ++ L  ME    +C+P++ TY
Sbjct: 752 DLIVWTVLVDGLLQEGDSDLCMKFLYLMESR--NCTPSLHTY 791


>gi|222637475|gb|EEE67607.1| hypothetical protein OsJ_25160 [Oryza sativa Japonica Group]
          Length = 225

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/198 (35%), Positives = 117/198 (59%), Gaps = 2/198 (1%)

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           RLA++A+ +LR M    +R D + Y  +IR  C+  ++  A ELM  M    + P+++ Y
Sbjct: 8   RLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVY 67

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            S+++G+C +GR ED   +F  M   G   ++V Y+ L+D +C++G  ++A  ++  M +
Sbjct: 68  SSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVR 127

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    PNVVTY  +I   C +G +KEA+G+L +M   G AP+ VT +TLIKG      +
Sbjct: 128 RG--LEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEM 185

Query: 323 DEAYQLIDKVVAGGSVSS 340
           DEA  L++++V G  + S
Sbjct: 186 DEAMWLLEEMVRGYIIQS 203



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 4/182 (2%)

Query: 206 IKGFCNAGRLED-ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           ++  C A RL D A GL + M+  G  A++V Y  L+ G+C    +++A+EL+GEM + G
Sbjct: 1   MRALC-ADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESG 59

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PNVV Y+S++Q +C  G  ++   +   M   G  P+ V  + LI   C  G   +
Sbjct: 60  --IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKK 117

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A+ ++D +V  G   +   Y+ L+  + +   +KEA  +  KM   GV PD +  + +I+
Sbjct: 118 AHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIK 177

Query: 385 EL 386
            L
Sbjct: 178 GL 179



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 87/167 (52%), Gaps = 2/167 (1%)

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           ++  C   +  +A+G+L  M + G   + VT  TLI+G C    +D+A +L+ ++   G 
Sbjct: 1   MRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGI 60

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
             +   YSSL+    ++ R ++  K+F +M   G++PD +  + +I  LC  G+  +   
Sbjct: 61  EPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHG 120

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + + + + G   +V +  ++VL+  +C++    EA  + + M +K +
Sbjct: 121 VMDMMVRRGLEPNVVT--YNVLINCMCKEGSVKEAIGVLKKMSEKGV 165



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 101/213 (47%), Gaps = 6/213 (2%)

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           ++A+ LL  M   G     +VVTY ++I+  C    + +A+ ++  M   G  PN V  S
Sbjct: 11  DQAVGLLRSMRSAG--VRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYS 68

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           +L++G+C  G  ++  ++  ++   G       Y+ L+  L +  + K+A  +   M+  
Sbjct: 69  SLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRR 128

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G++P+ +  +V+I  +C  G V E   + + + + G    V +  ++ L+ GL       
Sbjct: 129 GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVT--YNTLIKGLSDVLEMD 186

Query: 431 EAAKLARFMLKKRIWLQGPYVDKIVEHLK-KSG 462
           EA  L   M++  I +Q      I +  K KSG
Sbjct: 187 EAMWLLEEMVRGYI-IQSSQQSAIAQESKTKSG 218



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LC+  + A +A  V+  M    L P+ + YN +I   C++G +  A  ++K M   
Sbjct: 105 LIDSLCKVGK-AKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 163

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
            + PD++TY ++IKG  +   +++A  L + M R
Sbjct: 164 GVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVR 197


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 158/304 (51%), Gaps = 6/304 (1%)

Query: 123 EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC   +    V+ N LC++    + A  +L KM +  L P  +IYN +I   C+   M 
Sbjct: 10  KGCQPDLVTYGVVVNGLCKRGD-TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMD 68

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  L K M    + P+++TY S+I   CN GR  DA  L   M       ++  +SAL+
Sbjct: 69  DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 128

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           D   + G +  A +L  EM K   D  P++VTY+S+I  FC    + EA  + + M +  
Sbjct: 129 DAFVKEGKLVEAEKLYDEMVKRSID--PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 186

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C P+ VT +TLIKGFC    ++E  ++  ++   G V +   Y+ L+  L +      A+
Sbjct: 187 CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQ 246

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           ++F +M++ GV P+ +  + ++  LC  G++ +   ++E +++     ++ +  +++++ 
Sbjct: 247 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT--YNIMIE 304

Query: 422 GLCR 425
           G+C+
Sbjct: 305 GMCK 308



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 149/302 (49%), Gaps = 5/302 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R + +A  +L  M E  + PD   ++ +I  F ++G ++ A++L   M    + P
Sbjct: 96  LCNYGRWS-DASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 154

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            I+TY S+I GFC   RL++A  +F+ M    C  ++V Y+ L+ G C+   +E  +E+ 
Sbjct: 155 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 214

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM + G     N VTY  +IQ     G    A  I   M + G  PN +T +TL+ G C
Sbjct: 215 REMSQRG--LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 272

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G L++A  + + +       +   Y+ ++  + +  ++++   LF  +   GVKPD +
Sbjct: 273 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVV 332

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           A + MI   C  G   E   L++++++ G L   +S  ++ L+    R      +A+L +
Sbjct: 333 AYNTMISGFCRKGSKEEADALFKEMKEDGTLP--NSGCYNTLIRARLRDGDREASAELIK 390

Query: 438 FM 439
            M
Sbjct: 391 EM 392



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 147/285 (51%), Gaps = 5/285 (1%)

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
           M ++ +M     +PD + Y  V+   C++GD   A  L+  M    L P ++ Y ++I G
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C    ++DA  LFK M+  G   N+V YS+L+  +C  G    A  LL +M +     +
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIER--KIN 118

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P+V T++++I  F  +G + EA  + D M      P+ VT S+LI GFC+   LDEA Q+
Sbjct: 119 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 178

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            + +V+         Y++L+    + KR++E  ++F +M   G+  + +  +++I+ L  
Sbjct: 179 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 238

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            G       +++++   G   ++ +  ++ LL GLC KN  +E A
Sbjct: 239 AGDCDMAQEIFKEMVSDGVPPNIMT--YNTLLDGLC-KNGKLEKA 280



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 141/297 (47%), Gaps = 30/297 (10%)

Query: 97  YNRACEMSRI-------KQNPSIII--DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
           Y R  + SR+       K NP +     +++A+ +EG             L E  +L +E
Sbjct: 99  YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG------------KLVEAEKLYDE 146

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
                  M +  + P  + Y+++I  FC    +  A ++ + M     +PD++TY ++IK
Sbjct: 147 -------MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIK 199

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC   R+E+   +F+ M + G   N V Y+ L+ G+ + G  + A E+  EM  +G   
Sbjct: 200 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG--V 257

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PN++TY +++   C  G +++A+ + + ++     P   T + +I+G C  G +++ + 
Sbjct: 258 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 317

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           L   +   G       Y++++    R    +EA+ LF +M   G  P+    + +IR
Sbjct: 318 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIR 374



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 144/329 (43%), Gaps = 23/329 (6%)

Query: 7   SRILSSSVNIK-NSKIFALHFTTAS--------PAERFYTHLQKNPNNIEKTLATVKAKL 57
           SR+LS  +  K N  +F       +         AE+ Y  + K   +I+ ++ T  + +
Sbjct: 106 SRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR--SIDPSIVTYSSLI 163

Query: 58  DSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVV 117
           +  C    +H       QM   F +           + +    C+  R+++     ++V 
Sbjct: 164 NGFC----MHDRLDEAKQM-FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEG----MEVF 214

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
               + G V +     ++     +A   + A  + ++M    + P+ + YN ++   C+ 
Sbjct: 215 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 274

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A  + + +    + P I TY  MI+G C AG++ED   LF  +   G   ++VAY
Sbjct: 275 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAY 334

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + ++ G CR GS E A  L  EM+++G    PN   Y ++I+     G  + +  ++  M
Sbjct: 335 NTMISGFCRKGSKEEADALFKEMKEDG--TLPNSGCYNTLIRARLRDGDREASAELIKEM 392

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            + G A +  TI  L+     +G LD+++
Sbjct: 393 RSCGFAGDASTIG-LVTNMLHDGRLDKSF 420


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 160/323 (49%), Gaps = 11/323 (3%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
            G +   +   ++ +   KA LANE   +   M E     DT  YN VI  FC+ G +  
Sbjct: 573 HGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNK 632

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +L++ M +    P ++TY S+I G     RL++A  LF+  K +G   N+V YS+L+D
Sbjct: 633 AYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLID 692

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G  ++G ++ A  ++ E+ ++G   +PNV T+  ++        + EAL     M+ L C
Sbjct: 693 GFGKVGRIDEAYLIMEELMQKG--LTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKC 750

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            PN++T S LI G C     ++A+    ++   G   +   Y++++  L +   + EA  
Sbjct: 751 PPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASG 810

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS---VL 419
           LFS+  A+G  PD  + + MI  L    + ++ + L+E+    G       +IH+   V+
Sbjct: 811 LFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKG------CNIHTKTCVV 864

Query: 420 LLGLCRKNHSVEAAKLARFMLKK 442
           LL    K   +E A +   +LK+
Sbjct: 865 LLDALHKAECLEQAAIVGAVLKE 887



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 168/368 (45%), Gaps = 44/368 (11%)

Query: 134 VIFNLC----EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           V++N+C     KA   + +     +M    L PD + Y ++I + C+   +  A EL + 
Sbjct: 266 VLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQ 325

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           +      P    Y +MI G+ +AG+ ++A GL +  K  G   +++AY+ +L  + +   
Sbjct: 326 LEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRR 385

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-------- 301
           +E AL +  EM++   D  PNV TY  +I + C +G +  AL I D ME  G        
Sbjct: 386 VEEALRIFEEMKR---DAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTV 442

Query: 302 ---------------------------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
                                      C PN VT S+LI G    G +D+AY L +K++ 
Sbjct: 443 NIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLD 502

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G V     Y+SL+    +  R ++  K++ +M+ +G  PD    +  +  +   G+  +
Sbjct: 503 CGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEK 562

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           G  L+ +I   GF+   D+  +S+L+ GL +   + E  +L   M ++   L     + +
Sbjct: 563 GRALFREINAHGFIP--DARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAV 620

Query: 455 VEHLKKSG 462
           ++   KSG
Sbjct: 621 IDGFCKSG 628



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 141/298 (47%), Gaps = 7/298 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  K +G + SV     I     K R   EA+ +  +M   D  P+   YN +I + C
Sbjct: 357 LLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKR-DAVPNVPTYNILIDMLC 415

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            +G + AA E+   M    L+P+++T   MI   C A +LE+AC +F+ M    C  N V
Sbjct: 416 REGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAV 475

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGI 293
            +S+L+DG+ + G ++ A  L  +M     DC   P  + YTS+I+ F   G  ++   I
Sbjct: 476 TFSSLIDGLGKCGRVDDAYSLYEKML----DCGHVPGAIVYTSLIRSFFKCGRKEDGHKI 531

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M   GC+P+   I+T +      G  ++   L  ++ A G +     YS L+  LV+
Sbjct: 532 YKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVK 591

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
                E  +LF  M   G   D  A + +I   C  G+V + + L E+++  G   +V
Sbjct: 592 AGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTV 649



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 152/316 (48%), Gaps = 9/316 (2%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G +V   +++  F    K     +   + ++M      PD  + N  +    + G+    
Sbjct: 508 GAIVYTSLIRSFFKCGRK----EDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKG 563

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             L + +      PD  +Y  +I G   AG   +   LF  MK  GC  +  AY+A++DG
Sbjct: 564 RALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDG 623

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+ G + +A +LL EM+ +G    P VVTY SVI        + EA  + +  ++ G  
Sbjct: 624 FCKSGKVNKAYQLLEEMKVKGH--PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIK 681

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
            N V  S+LI GF   G +DEAY ++++++  G   +   ++ L+  LV+ + + EA   
Sbjct: 682 LNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALIC 741

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F  M      P+ +  S++I  LC   +  + F  +++++K+G     ++  ++ ++ GL
Sbjct: 742 FQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGL--KPNTITYTTMISGL 799

Query: 424 CRKNHSVEAAKL-ARF 438
            +  + +EA+ L +RF
Sbjct: 800 AKAGNILEASGLFSRF 815



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 187/418 (44%), Gaps = 7/418 (1%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMS 104
            +E +L+ +  K     VI VL R     +   + +F WA  Q+   H    YN    + 
Sbjct: 78  TLENSLSALGEKPLPELVIGVLKRL--KDANTAVNYFQWAEKQTEKVHCPEAYNSLLMVM 135

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
                   +  ++E     G   S  +   +   C K+R   EA  +++ M +F  RP  
Sbjct: 136 ARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAF 195

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
             Y  +I    E  +      L   M  +    ++  + ++I+ F   GR++ A  L   
Sbjct: 196 SAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDE 255

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           MK +   A++V Y+  +D   + G ++ + +   EM+  G    P+ VTYTS+I + C  
Sbjct: 256 MKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHG--LMPDDVTYTSMIGVLCKA 313

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             + EA+ + +++E     P     +T+I G+   G  DEAY L+++  A GS+ S   Y
Sbjct: 314 NRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAY 373

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + ++  L + +R++EA ++F +M    V P+    +++I  LC  G++     + +D+E+
Sbjct: 374 NCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDMER 432

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            G   +V +   ++++  LC+     EA  +   M  K           +++ L K G
Sbjct: 433 AGLFPNVLT--VNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCG 488



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E   ++G   +V     + +   KA   NEA+   + M +    P+ I Y+ +I   C
Sbjct: 706 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC 765

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
                  A    + M  + L P+ ITY +MI G   AG + +A GLF   K +G   +  
Sbjct: 766 RVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSA 825

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
           +Y+A+++G+        A  L  E   +G  C  N+ T T V+
Sbjct: 826 SYNAMIEGLSSANKAMDAYALFEETRLKG--C--NIHTKTCVV 864



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 89/208 (42%), Gaps = 6/208 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  K  G  ++V +   + +   K    +EA  ++ ++ +  L P+   +N ++    
Sbjct: 671 LFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV 730

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +  ++  A    + M  +   P+ ITY  +I G C   +   A   ++ M++ G   N +
Sbjct: 731 KAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTI 790

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ ++ G+ + G++  A  L    +  GG   P+  +Y ++I+         +A  + +
Sbjct: 791 TYTTMISGLAKAGNILEASGLFSRFKANGG--IPDSASYNAMIEGLSSANKAMDAYALFE 848

Query: 296 RMEALGCAPNRVT----ISTLIKGFCVE 319
                GC  +  T    +  L K  C+E
Sbjct: 849 ETRLKGCNIHTKTCVVLLDALHKAECLE 876


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 164/337 (48%), Gaps = 7/337 (2%)

Query: 102 EMSRIKQNPSIIIDVVEAYKE-EG--CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           E++R   +  ++   VEA K  EG  C ++      + +   KA    +A+ V R M + 
Sbjct: 59  ELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQS 118

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            LRPDT  +N ++  F +   + +  +L + M   +  P++ITY  +I   C  G +E A
Sbjct: 119 GLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKA 178

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             +F  MK  GC  N+  Y++++DG+ + G +++A  L  EM  EG       V Y S+I
Sbjct: 179 LKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEG--LVATRVVYNSLI 236

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                 G    A  +   M + G  P+ VT ++L+ G  V G   EA ++  +    G  
Sbjct: 237 HGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCA 296

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y+ L+  L ++KRL EA ++F ++   G+ PD    + ++  LC  G++ + F L
Sbjct: 297 LDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFIL 356

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             D+++ G   + D  +++ L+ GL +     EA +L
Sbjct: 357 LGDMKRAG--CTPDVTVYNTLIDGLRKSGRVEEAGQL 391



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 157/348 (45%), Gaps = 40/348 (11%)

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
             V+ N  +KA+  +    +  +M   +  P+ I Y+ +I   C+ G +  A ++   M 
Sbjct: 127 FNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMK 186

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
                P+I TY SMI G   +G ++ A  LF+ M   G  A  V Y++L+ G+ R G  +
Sbjct: 187 SRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRAD 246

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSV---------------------------------- 277
            A +L  EM  +G    P+ VT+TS+                                  
Sbjct: 247 AAAKLFREMLSKG--LQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNV 304

Query: 278 -IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
            I   C    + EA  I   +E  G  P+  T + L+ G C  G + +A+ L+  +   G
Sbjct: 305 LIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAG 364

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
                  Y++L+  L ++ R++EA +L  +M + G +PD +  + +I E C GG++ +  
Sbjct: 365 CTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDAL 424

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            L+E+I   GF ++V    ++ +L GLC      EA KL   M ++ +
Sbjct: 425 RLFEEISAKGFANTV---TYNTILNGLCMAGRVDEAYKLFNGMKQETV 469



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 9/182 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+  R+ +   I  ++    +E+G V  V     + + LC+  R+ ++A  +L  M    
Sbjct: 310 CKSKRLDEAWEIFGEL----EEDGLVPDVYTFNALMDGLCKSGRI-HDAFILLGDMKRAG 364

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             PD  +YN +I    + G +  A +L+  M  +   PD++TY ++I   C  GR+EDA 
Sbjct: 365 CTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDAL 424

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE--GGDCSPNVVTYTSV 277
            LF+ +   G A N V Y+ +L+G+C  G ++ A +L   M++E   G   P+ VTYT++
Sbjct: 425 RLFEEISAKGFA-NTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTL 483

Query: 278 IQ 279
           + 
Sbjct: 484 LN 485


>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62540, mitochondrial; Flags: Precursor
 gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 205/434 (47%), Gaps = 19/434 (4%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMS 104
           N+E  L  +K  L    ++EVL R F    +   RFF WAA +  + H+S  YN    + 
Sbjct: 147 NMEAVLDEMKLDLSHDLIVEVLER-FRHARKPAFRFFCWAAERQGFAHASRTYNSMMSIL 205

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR--P 162
              +    ++ V+E    +G +++++   +       A+   +A+ +   M ++  +   
Sbjct: 206 AKTRQFETMVSVLEEMGTKG-LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGV 264

Query: 163 DTI--IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +TI  + +++ R    K   +  D+L +        P+++TY  ++ G+C    L +A  
Sbjct: 265 ETINCLLDSLGRAKLGKEAQVLFDKLKE-----RFTPNMMTYTVLLNGWCRVRNLIEAAR 319

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           ++  M  HG   ++VA++ +L+G+ R      A++L   M K  G C PNV +YT +I+ 
Sbjct: 320 IWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVM-KSKGPC-PNVRSYTIMIRD 377

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +  M+ A+   D M   G  P+    + LI GF  +  LD  Y+L+ ++   G    
Sbjct: 378 FCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPD 437

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  Y++L+  +   K  +   ++++KM+ + ++P     +++++   +      G  +++
Sbjct: 438 GKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWD 497

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD--KIVEHL 458
           ++ K G     D + ++VL+ GL  +  S EA +    ML K   ++ P +D  K     
Sbjct: 498 EMIKKGICP--DDNSYTVLIRGLISEGKSREACRYLEEMLDK--GMKTPLIDYNKFAADF 553

Query: 459 KKSGDEELITNLPK 472
            + G  E+   L +
Sbjct: 554 HRGGQPEIFEELAQ 567


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 155/306 (50%), Gaps = 5/306 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   +L  EA  ++++M E  L  D I YN +I  FC +G +     L + M   
Sbjct: 471 LIHGLCGAGKLP-EASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKR 529

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PDI TY  +++G CN G+L+DA  L+   K  G  +N+  Y  +++G C+   +E  
Sbjct: 530 GIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDV 589

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  E+  +  +   N + Y  +I+  C  G +  AL +L+ M++ G  PN  T S+LI
Sbjct: 590 ENLFNELLSKKMEL--NSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLI 647

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G +++A  LID++   G V +  CY++L+    +  ++  AE  + +M++  + 
Sbjct: 648 HGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIH 707

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    +VMI   C  G + +   L   +++ G +  V +  ++VL  G C+ N    A 
Sbjct: 708 PNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVT--YNVLTNGFCKANDMDNAF 765

Query: 434 KLARFM 439
           K+   M
Sbjct: 766 KVCDQM 771



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 139/280 (49%), Gaps = 11/280 (3%)

Query: 69  CFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS 128
           CF  + +M  R      +Q      +F+    C + ++       I + + +K  G + +
Sbjct: 519 CFRLREEMTKR-----GIQPDIYTYNFLLRGLCNVGKLDD----AIKLWDEFKASGLISN 569

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           +    ++     KA    +   +  ++    +  ++I+YN +I+  C+ G++ AA +L++
Sbjct: 570 IHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLE 629

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P+  TY S+I G CN G +EDA  L   M++ G   N+V Y+AL+ G C+LG
Sbjct: 630 NMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLG 689

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            M+ A     EM     +  PN  TYT +I  +C  G M++A  +L +M+  G  P+ VT
Sbjct: 690 QMDTAESTWLEM--ISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVT 747

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            + L  GFC   ++D A+++ D++   G       Y++LV
Sbjct: 748 YNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 787



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 132/324 (40%), Gaps = 61/324 (18%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           M  R   M RI  N ++I+      K EGC                 RL  E       M
Sbjct: 491 MLERGLPMDRITYN-ALILGFCNEGKVEGCF----------------RLREE-------M 526

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            +  ++PD   YN ++R  C  G +  A +L        L  +I TY  M++G+C A R+
Sbjct: 527 TKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRI 586

Query: 216 EDACGLF-----------------------------------KVMKRHGCAANLVAYSAL 240
           ED   LF                                   + MK  G   N   YS+L
Sbjct: 587 EDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSL 646

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G+C +G +E A  L+ EM KEG    PNVV YT++I  +C  G M  A      M + 
Sbjct: 647 IHGVCNIGLVEDAKHLIDEMRKEG--FVPNVVCYTALIGGYCKLGQMDTAESTWLEMISF 704

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
              PN+ T + +I G+C  GN+++A  L+ K+   G V     Y+ L     +   +  A
Sbjct: 705 NIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNA 764

Query: 361 EKLFSKMLASGVKPDGLACSVMIR 384
            K+  +M   G+  D +  + ++ 
Sbjct: 765 FKVCDQMATEGLPVDEITYTTLVH 788



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 160/358 (44%), Gaps = 44/358 (12%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +V     E  C        VI  LC+  ++ N A+ +  KM +  + P+ + YN +I   
Sbjct: 207 EVFRVMSEGACPDVFSFTNVINALCKGGKMEN-AIELFMKMEKLGISPNVVTYNCIINGL 265

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ G +  A EL + M +  + P++ TY ++I G       +    +   M   G   N+
Sbjct: 266 CQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNV 325

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V ++ L+DG C++G++E AL++   M  +  + +P  VT  S++Q FC    ++ A   L
Sbjct: 326 VVFNNLIDGYCKMGNIEGALKIKDVMISK--NITPTSVTLYSLMQGFCKSDQIEHAENAL 383

Query: 295 DRMEALGCA-----------------------------------PNRVTISTLIKGFCVE 319
           + + + G +                                   P+ + ++ L+ G C +
Sbjct: 384 EEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKD 443

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G   EA +L  +++  GS +S    ++L+  L    +L EA ++  +ML  G+  D +  
Sbjct: 444 GKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITY 503

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCRKNHSVEAAKL 435
           + +I   C  G+V   F L E++ K G    +  DI++   LL GLC      +A KL
Sbjct: 504 NALILGFCNEGKVEGCFRLREEMTKRG----IQPDIYTYNFLLRGLCNVGKLDDAIKL 557



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 131/267 (49%), Gaps = 7/267 (2%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           + PD     +V+   C+K    +A    K M   +  P  +    ++ G C  G+  +A 
Sbjct: 393 IHPDNCY--SVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEAT 450

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L+  +   G  A+ V  +AL+ G+C  G +  A  ++ EM + G     + +TY ++I 
Sbjct: 451 ELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERG--LPMDRITYNALIL 508

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            FC +G ++    + + M   G  P+  T + L++G C  G LD+A +L D+  A G +S
Sbjct: 509 GFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLIS 568

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y  ++    +  R+++ E LF+++L+  ++ + +  +++I+  C  G V     L 
Sbjct: 569 NIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLL 628

Query: 400 EDIEKIGFL---SSVDSDIHSVLLLGL 423
           E+++  G L   ++  S IH V  +GL
Sbjct: 629 ENMKSKGILPNCATYSSLIHGVCNIGL 655



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 15/289 (5%)

Query: 155 MPEFDLRPDTIIYNN--VIRLFCEKGDMIAADELMKGMGLIDLYP-----DIITYVSMIK 207
           +  FDL    I+Y N  V+ L  EK  +  A+ L     ++  +      D++ +V   +
Sbjct: 102 LSNFDLPSILIVYGNLPVLNLDSEKFHIEIANALFGLTSVVGRFEWTQAFDLLIHVYSTQ 161

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            F N G    A  +F ++ R G   +L   +  L  + +    E+  E+   M +  G C
Sbjct: 162 -FRNLG-FSCAVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSE--GAC 217

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+V ++T+VI   C  G M+ A+ +  +ME LG +PN VT + +I G C  G LD A++
Sbjct: 218 -PDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFE 276

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L +K+   G   +   Y +L+  L++     +   +  +M+ +G  P+ +  + +I   C
Sbjct: 277 LKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYC 336

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
             G + EG    +D+     ++     ++S L+ G C+ +  +E A+ A
Sbjct: 337 KMGNI-EGALKIKDVMISKNITPTSVTLYS-LMQGFCKSDQ-IEHAENA 382



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 4/130 (3%)

Query: 116 VVEAYKEEGCVVSVK-MMKVIFNLCEKARLAN-EAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++  ++EG V +V     +I   C+  ++   E+ W+  +M  F++ P+   Y  +I  
Sbjct: 662 LIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWL--EMISFNIHPNKFTYTVMIDG 719

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C+ G+M  A+ L+  M    + PD++TY  +  GFC A  +++A  +   M   G   +
Sbjct: 720 YCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVD 779

Query: 234 LVAYSALLDG 243
            + Y+ L+ G
Sbjct: 780 EITYTTLVHG 789


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 173/347 (49%), Gaps = 4/347 (1%)

Query: 95  FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK 154
           F YN       ++++   + +++   + EG V S+    ++      +    EA  V  +
Sbjct: 218 FTYNTLLNACVVRKDREGVDEILGLMEREGVVASLVTYTILIEWYASSERIGEAEKVYEE 277

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E ++  D  +Y ++I   C  G++  A  L   M    + P+  T+ ++I G C AG+
Sbjct: 278 MCERNVEMDVYVYTSMISWNCRAGNVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQ 337

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +E A  L + M+  G   N+V ++ ++DG C+ G M+ A  L   ME++G +   +V TY
Sbjct: 338 MEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEA--DVFTY 395

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +    C     +EA  +L+ M   G APN VT +T I+ +C EGNL E  + +  +  
Sbjct: 396 NILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEK 455

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G V +   Y++L+    + +++K+A  L ++M+  G+ PD    + +I   C+  +V E
Sbjct: 456 RGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDKVDE 515

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
              L+ ++   G   +V +  ++ ++ GL ++  + EA KL   M++
Sbjct: 516 ALKLFNEMLVKGIRGNVKT--YTAIISGLSKEGRADEALKLYDEMMR 560



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 148/308 (48%), Gaps = 7/308 (2%)

Query: 127 VSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           + V+ + ++ + LC +  +   A  ++ +M    + P    YN ++     + D    DE
Sbjct: 180 IGVQSLTIVVDVLCRRGEVGR-AKELMNEMAARGVVPTVFTYNTLLNACVVRKDREGVDE 238

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           ++  M    +   ++TY  +I+ + ++ R+ +A  +++ M       ++  Y++++   C
Sbjct: 239 ILGLMEREGVVASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNC 298

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           R G++ RA  L  EM   G    PN  T+ ++I   C  G M+ A  +L+ M+  G   N
Sbjct: 299 RAGNVRRASALFDEMICRG--IVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLN 356

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  +T++ G+C  G +DEA++L D +   G  +    Y+ L   L +  R +EA+++ +
Sbjct: 357 VVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLN 416

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            M+  GV P+ + C+  I   C  G + E      +IEK G + ++   +    L+    
Sbjct: 417 VMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNI---VTYNTLIDAYS 473

Query: 426 KNHSVEAA 433
           KN  V+ A
Sbjct: 474 KNEKVKQA 481



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 2/213 (0%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           + +I+N ++  +C++G M  A  L   M       D+ TY  +  G C   R E+A  + 
Sbjct: 356 NVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVL 415

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
            VM   G A N+V  +  ++  C+ G++      L  +EK G    PN+VTY ++I  + 
Sbjct: 416 NVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRG--VVPNIVTYNTLIDAYS 473

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
               +K+A  +   M   G  P+  T ++LI G C+   +DEA +L ++++  G   +  
Sbjct: 474 KNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVK 533

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            Y++++  L +  R  EA KL+ +M+  G+ PD
Sbjct: 534 TYTAIISGLSKEGRADEALKLYDEMMRMGLIPD 566



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 3/173 (1%)

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
           E G     V + T V+ + C +G +  A  +++ M A G  P   T +TL+    V  + 
Sbjct: 174 ESGRVDIGVQSLTIVVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKDR 233

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           +   +++  +   G V+S   Y+ L+     ++R+ EAEK++ +M    V+ D    + M
Sbjct: 234 EGVDEILGLMEREGVVASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSM 293

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           I   C  G V     L++++   G +   ++     L+ G+C+    +EAA++
Sbjct: 294 ISWNCRAGNVRRASALFDEMICRGIVP--NTXTFGALISGVCKAGQ-MEAAEI 343


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 183/383 (47%), Gaps = 16/383 (4%)

Query: 33  ERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSY 90
           ERF   L+  K   + EK L  +K K+D   V EVL      +  + I+FF WA  + ++
Sbjct: 63  ERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLK--IDVEIHVKIQFFKWAGKRRNF 120

Query: 91  RHSSFMYNRAC----EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
            H S  Y        E   + +    I ++V +     CV+    +  I  +  KA++ N
Sbjct: 121 EHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRS----TCVIGPADLSEIVKVLGKAKMVN 176

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDIITYVSM 205
           +A+ +  ++     +P +  YN++I +  ++G      EL   M    D  PD +TY ++
Sbjct: 177 KALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSAL 236

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  F   GR + A  LF  MK +G       Y+ +L    +LG +E+AL L+ EM+++G 
Sbjct: 237 IAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKG- 295

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C+  V TYT +I+     G ++EA  I   M   GC P+ V I+ LI      G L +A
Sbjct: 296 -CALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADA 354

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIR 384
            +L +++ +     +   Y++++  L  +K R  EA   + KM  +GV P     S++I 
Sbjct: 355 IKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILID 414

Query: 385 ELCLGGQVLEGFCLYEDIEKIGF 407
             C   +V +   L E++++ GF
Sbjct: 415 GFCKTNRVEKALLLLEEMDEKGF 437



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 150/330 (45%), Gaps = 38/330 (11%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + +V+  KE+GC ++V     +     KA    EA  +   M +   +PD ++ NN+I L
Sbjct: 285 LGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINL 344

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG-FCNAGRLEDACGLFKVMKRHGCAA 232
             + G +  A +L + M  +   P+++TY ++IK  F +  R  +A   ++ MK +G   
Sbjct: 345 LGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVP 404

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----------- 281
           +   YS L+DG C+   +E+AL LL EM+++G   +P    Y S+I              
Sbjct: 405 SSFTYSILIDGFCKTNRVEKALLLLEEMDEKG--FAPCPAAYCSLINALGKAKRYEAANE 462

Query: 282 --------CGK----------------GMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
                   CG                 G + EA+ + + M+ LGC P+    + L+ G  
Sbjct: 463 LFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMV 522

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G  DEA+ L+  +   G       ++ ++    RT   K A ++F++M  S +KPD +
Sbjct: 523 RVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVV 582

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           + + ++  L   G   E   L +++   GF
Sbjct: 583 SYNTVLGCLSRAGMFEEAAKLMKEMNSKGF 612



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 2/231 (0%)

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           E  KE G V S     ++ +   K     +A+ +L +M E    P    Y ++I    + 
Sbjct: 395 EKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKA 454

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
               AA+EL + +     Y     Y  MIK     GRL +A  LF  MK+ GC  ++ AY
Sbjct: 455 KRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAY 514

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           +AL+ G+ R+G  + A  LL  ME+ G  C+P++ ++  ++  F   G  K A+ +  RM
Sbjct: 515 NALMSGMVRVGMTDEAHSLLRTMEENG--CTPDLNSHNIILNGFARTGGPKGAIEMFTRM 572

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +     P+ V+ +T++      G  +EA +L+ ++ + G       YSS++
Sbjct: 573 KNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSIL 623



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 63/134 (47%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+    K+ GC   V     + +   +  + +EA  +LR M E    PD   +N ++  
Sbjct: 496 VDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNG 555

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           F   G    A E+   M    + PD+++Y +++     AG  E+A  L K M   G   +
Sbjct: 556 FARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYD 615

Query: 234 LVAYSALLDGICRL 247
           L+ YS++L+ + ++
Sbjct: 616 LITYSSILEAVGKI 629


>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like, partial [Brachypodium distachyon]
          Length = 907

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 172/364 (47%), Gaps = 7/364 (1%)

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           P++  D+VE YK+     S     ++      A    +A++V  +M +   R      N 
Sbjct: 77  PTLFPDLVEVYKDFS--FSAASFDLLLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNR 134

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           ++    + GD+  A  + + M      PD  T   M K +C  GR+  A    K M+  G
Sbjct: 135 LLNQLVQAGDIGTAVAVFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMG 194

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              NLVAY A++DG CR+G  E A +LL  ++ +G   SPNVVTYT +++ +C +G M+E
Sbjct: 195 LDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVKG--LSPNVVTYTLLVKGYCKEGRMEE 252

Query: 290 ALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           A  ++  + E      + V    LI G+C  G +++A ++ D+++  G   +   Y++++
Sbjct: 253 AEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMI 312

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
               +  R+ E EKL       GV  D  + + ++   C  G + + F   + + + GF 
Sbjct: 313 NGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFT 372

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
            +  +  ++ LL G C +    +A KL   MLK+ +         +++   K+G  E   
Sbjct: 373 GTTLT--YNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQAL 430

Query: 469 NLPK 472
           NL K
Sbjct: 431 NLWK 434



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 139/275 (50%), Gaps = 4/275 (1%)

Query: 139 CEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           C++ R+  EA  V++++ E + +  D + Y  +I  +C++G M  A+ +   M    +  
Sbjct: 245 CKEGRM-EEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQV 303

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           ++  Y +MI G+C  GR+ +   L +  +  G   +  +Y+ L+DG CR G M +A E  
Sbjct: 304 NMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETC 363

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M + G   +   +TY +++  FC +G + +AL +   M   G  PN ++ STL+ GF 
Sbjct: 364 DMMVRNG--FTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFF 421

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G  ++A  L  + +A G   +    ++++  L + +R+ EAE+LF +M       D L
Sbjct: 422 KAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSL 481

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
               +I   C  G +     +  ++E +GF+ SV+
Sbjct: 482 TYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVE 516



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 173/401 (43%), Gaps = 62/401 (15%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL-- 186
           V +  VI  LC+  R+  EA  +  +M E+    D++ Y  +I  +C+ GD+  A ++  
Sbjct: 446 VTINTVINGLCKNRRMT-EAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRI 504

Query: 187 -MKGMGLID--------------------------------LYPDIITYVSMIKGFCNAG 213
            M+ +G +                                 L P+ +TY ++I G+C  G
Sbjct: 505 EMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEG 564

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--GDCSPNV 271
            L DAC L+  M   G   NL   S L+    R G ++ A  +L ++       DCS + 
Sbjct: 565 NLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDMIQDCSAST 624

Query: 272 VTYTSVIQI----------------------FCGKGMMKEALGILDRMEALGCAPNRVTI 309
           +    V  I                       C  G + +A  + + ++  G  P+  T 
Sbjct: 625 LNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTY 684

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           S+LI G    G++D A+ L D++++     +   Y+SL+  L ++  +  A  LF+K+ +
Sbjct: 685 SSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQS 744

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            G+ P+ +  + +I   C  G   E F L + + K G   +V +  +++L+ GLC + + 
Sbjct: 745 KGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPTVFT--YTILIHGLCTQGYM 802

Query: 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            EA KL   M++  +         +++   + G+ + IT L
Sbjct: 803 EEAIKLLDQMIENNVDPNFITYWTLIQGYARCGNMKAITKL 843



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 146/311 (46%), Gaps = 9/311 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRK 154
           + N  C+  R++    +  ++++A    G  V++ +   + N  C+  R+  E   +L+ 
Sbjct: 276 LINGYCQRGRMEDANRVRDEMIDA----GVQVNMFVYNTMINGYCKLGRMG-EVEKLLQA 330

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
                +  D   YN ++  +C KG M  A E    M         +TY +++ GFC+ G 
Sbjct: 331 NEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGA 390

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           ++DA  L+ +M + G   N ++ S LLDG  + G  E+AL L  E    G   + NVVT 
Sbjct: 391 IDDALKLWFLMLKRGVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARG--LARNVVTI 448

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            +VI   C    M EA  +  RM+   C  + +T  TLI G+C  G+L  A Q+  ++  
Sbjct: 449 NTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMEN 508

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G V S   ++S +  L   K+  +   +  +M A G+ P+ +    +I   C  G + +
Sbjct: 509 LGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHD 568

Query: 395 GFCLY-EDIEK 404
              LY E +EK
Sbjct: 569 ACILYFEMVEK 579



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 2/210 (0%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           I++N VI   C+ G +  A  L + + +    PD  TY S+I G   +G ++ A GL   
Sbjct: 647 IMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDE 706

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M       N+V Y++L+ G+C+  ++ RA+ L  +++ +G   SPN +TY ++I   C  
Sbjct: 707 MLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKG--ISPNAITYNTLIDGHCKD 764

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G   EA  +  +M   G  P   T + LI G C +G ++EA +L+D+++      +   Y
Sbjct: 765 GNTTEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITY 824

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
            +L+    R   +K   KL+++M   G+ P
Sbjct: 825 WTLIQGYARCGNMKAITKLYNEMHICGLLP 854



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 144/309 (46%), Gaps = 29/309 (9%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    +I   C++  L ++A  +  +M E  L+P+  I + ++  F  +G +  A+ ++
Sbjct: 550 TVTYGALIAGWCKEGNL-HDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVL 608

Query: 188 KGMGLIDLYPDI--------------------------ITYVSMIKGFCNAGRLEDACGL 221
           + +   D+  D                           I +  +I G C  GR+ DA  L
Sbjct: 609 QKLADTDMIQDCSASTLNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNL 668

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F+ +K  G   +   YS+L+ G    GS++ A  L  EM       +PN+VTY S+I   
Sbjct: 669 FEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLS--ARLTPNIVTYNSLIYGL 726

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C    +  A+ + +++++ G +PN +T +TLI G C +GN  EA++L  K++  G   + 
Sbjct: 727 CKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPTV 786

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y+ L+  L     ++EA KL  +M+ + V P+ +    +I+     G +     LY +
Sbjct: 787 FTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQGYARCGNMKAITKLYNE 846

Query: 402 IEKIGFLSS 410
           +   G L +
Sbjct: 847 MHICGLLPA 855



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 11/250 (4%)

Query: 64  EVLHRCFPSQSQMG-IRFFIWAALQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVE 118
           +++  C  S   +G +   I +    +++ +  M+N      C++ R+    ++  D+  
Sbjct: 615 DMIQDCSASTLNIGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDL-- 672

Query: 119 AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
             K +G +        + + C  +   + A  +  +M    L P+ + YN++I   C+  
Sbjct: 673 --KVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSC 730

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
           ++  A  L   +    + P+ ITY ++I G C  G   +A  L + M + G    +  Y+
Sbjct: 731 NVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPTVFTYT 790

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            L+ G+C  G ME A++LL +M +   D  PN +TY ++IQ +   G MK    + + M 
Sbjct: 791 ILIHGLCTQGYMEEAIKLLDQMIENNVD--PNFITYWTLIQGYARCGNMKAITKLYNEMH 848

Query: 299 ALGCAPNRVT 308
             G  P   T
Sbjct: 849 ICGLLPANWT 858


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 166/351 (47%), Gaps = 7/351 (1%)

Query: 115 DVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + +E Y+    EG   S+K    +     K R +   M +L++M +  LRP+   +   I
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICI 269

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           R+    G +  A E+ + M      PD++TY  +I   CNAG+LE+A  LF  MK +G  
Sbjct: 270 RVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHK 329

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            + V Y  LLD     G ++   E   +ME +G    P+VVT+T ++ + C      EA 
Sbjct: 330 PDQVIYITLLDKFNDFGDLDTFKEFWSQMEADG--YMPDVVTFTILVDVLCKARDFDEAF 387

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
              D M   G  PN  T +TLI G    G +++A +L+D + + G   +   Y + +   
Sbjct: 388 ATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYF 447

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            ++    +A + F KM A G+ P+ +AC+  +  L   G++ E   ++  + + G   + 
Sbjct: 448 GKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGL--AP 505

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           DS  +++++    +     EA  L   M++         V+ +++ L K+G
Sbjct: 506 DSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAG 556



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 137/288 (47%), Gaps = 2/288 (0%)

Query: 115  DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
            D+ +  K  GC        ++  +  K+    E   + ++M     +PD I YN VI   
Sbjct: 809  DLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSL 868

Query: 175  CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
             +  ++  A +    +   D  P   TY  +I G    GRLE+A  LF+ M  +GC  N 
Sbjct: 869  AKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNC 928

Query: 235  VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
              ++ L++G  ++G  E A +L   M  EG    P++ +YT ++   C  G + EAL   
Sbjct: 929  AIFNILINGYGKIGDTETACQLFKRMVNEG--IRPDLKSYTILVDCLCLAGRVDEALYYF 986

Query: 295  DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
            + +++ G  P+ +  + +I G      ++EA  L +++   G V     Y+SL++ L   
Sbjct: 987  NELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLA 1046

Query: 355  KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
              +++A++++ ++  +G++PD    + +IR   L       + +Y+++
Sbjct: 1047 GMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNM 1094



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 145/300 (48%), Gaps = 2/300 (0%)

Query: 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
           K++  +++ +++  ++ G   +V    +   +  +A   +EA  + R+M +    PD + 
Sbjct: 240 KRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVT 299

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           Y  +I   C  G +  A EL   M      PD + Y++++  F + G L+     +  M+
Sbjct: 300 YTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQME 359

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G   ++V ++ L+D +C+    + A      M K+G    PN+ TY ++I      G 
Sbjct: 360 ADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQG--ILPNLHTYNTLICGLLRAGR 417

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +++AL +LD ME++G  P   T  T I  F   G   +A +  +K+ A G V +    ++
Sbjct: 418 IEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNA 477

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            +  L    RL+EA+ +F+ +  +G+ PD +  ++M++     GQV E   L  ++ + G
Sbjct: 478 SLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG 537



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 144/301 (47%), Gaps = 10/301 (3%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A+ +L  M    ++P    Y   I  F + G+   A E  + M    + P+I+   + +
Sbjct: 420 DALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASL 479

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
                 GRL +A  +F  ++ +G A + V Y+ ++    ++G ++ A+ LL EM + G  
Sbjct: 480 YSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG-- 537

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C P+V+   S+I      G + EA  + DRM+ +  +P  VT +TL+ G   EG + +A 
Sbjct: 538 CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAI 597

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L + ++      +   +++L+    +   ++ A K+FSKM     KPD L  + +I  L
Sbjct: 598 ELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV--LLLGLCRKNHSVEAAKLAR-FMLKKR 443
               +V   F  +  ++K     S+  D  ++  LL GL +     +A  +AR FM + R
Sbjct: 658 IKENKVNHAFWFFHQLKK-----SMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVR 712

Query: 444 I 444
            
Sbjct: 713 F 713



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 134/304 (44%), Gaps = 4/304 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +R D   Y  + +    +G +     ++  M       +  +Y  +I     +G   +A 
Sbjct: 153 IRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEAL 212

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +++ M   G   +L  YSAL+  + +    E  + LL EME  G    PNV T+T  I+
Sbjct: 213 EVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLG--LRPNVYTFTICIR 270

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
           +    G + EA  I  RM+  GC P+ VT + LI   C  G L+ A +L  K+ A G   
Sbjct: 271 VLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKP 330

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y +L+ +      L   ++ +S+M A G  PD +  ++++  LC      E F  +
Sbjct: 331 DQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATF 390

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459
           + + K G L ++ +  ++ L+ GL R     +A KL   M    +          +++  
Sbjct: 391 DVMRKQGILPNLHT--YNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFG 448

Query: 460 KSGD 463
           KSG+
Sbjct: 449 KSGE 452



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 106/201 (52%), Gaps = 2/201 (0%)

Query: 147  EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
            EAM +  +M ++  +P+  I+N +I  + + GD   A +L K M    + PD+ +Y  ++
Sbjct: 911  EAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILV 970

Query: 207  KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
               C AGR+++A   F  +K  G   + +AY+ +++G+ +   ME AL L  EM   G  
Sbjct: 971  DCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRG-- 1028

Query: 267  CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
              P++ TY S++      GM+++A  + + ++  G  P+  T + LI+G+ +  N + AY
Sbjct: 1029 IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAY 1088

Query: 327  QLIDKVVAGGSVSSGGCYSSL 347
             +   ++  G   + G Y+ L
Sbjct: 1089 TVYKNMMVDGCNPNIGTYAQL 1109



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 119/266 (44%), Gaps = 3/266 (1%)

Query: 147  EAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            E  W + + M      PD   +N ++ +  + G +    EL K M      PD ITY  +
Sbjct: 805  EKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 206  IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
            I     +  L+ A   F  +           Y  L+DG+ ++G +E A+ L  EM   G 
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYG- 923

Query: 266  DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             C PN   +  +I  +   G  + A  +  RM   G  P+  + + L+   C+ G +DEA
Sbjct: 924  -CKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEA 982

Query: 326  YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
                +++ + G       Y+ ++  L +++R++EA  L+++M   G+ PD    + ++  
Sbjct: 983  LYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLN 1042

Query: 386  LCLGGQVLEGFCLYEDIEKIGFLSSV 411
            L L G V +   +YE+++  G    V
Sbjct: 1043 LGLAGMVEQAKRMYEELQLAGLEPDV 1068



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 167/399 (41%), Gaps = 46/399 (11%)

Query: 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR 161
           EM R+++  ++        +E G         ++     K    +EA+ +L +M      
Sbjct: 484 EMGRLREAKTMF----NGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCE 539

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD I+ N++I    + G +  A ++   M  + L P ++TY +++ G    GR++ A  L
Sbjct: 540 PDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIEL 599

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F+ M    C+ N ++++ LLD  C+   +E AL++  +M     DC P+V+TY +VI   
Sbjct: 600 FESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVM--DCKPDVLTYNTVIYGL 657

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC------------------------ 317
             +  +  A     +++     P+ VTI TL+ G                          
Sbjct: 658 IKENKVNHAFWFFHQLKK-SMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVN 716

Query: 318 ------------VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
                       VE  +D+A    +++V  G          LV  L + KR   A ++F 
Sbjct: 717 RSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFD 776

Query: 366 KMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           K     G+ P   + + +I EL       + + L++D++ +G   + D+   ++LL    
Sbjct: 777 KFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVG--CAPDAFTFNMLLAVHG 834

Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           +     E  +L + M+ +R        + ++  L KS +
Sbjct: 835 KSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNN 873



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 121/264 (45%), Gaps = 2/264 (0%)

Query: 160  LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            + P    YN +I    E      A +L K M  +   PD  T+  ++     +G++ +  
Sbjct: 784  ISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELF 843

Query: 220  GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
             L+K M    C  + + Y+ ++  + +  ++++AL+   ++     D  P   TY  +I 
Sbjct: 844  ELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLV--SSDFRPTPRTYGPLID 901

Query: 280  IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                 G ++EA+ + + M   GC PN    + LI G+   G+ + A QL  ++V  G   
Sbjct: 902  GLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRP 961

Query: 340  SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
                Y+ LV  L    R+ EA   F+++ ++G+ PD +A + +I  L    ++ E   LY
Sbjct: 962  DLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALY 1021

Query: 400  EDIEKIGFLSSVDSDIHSVLLLGL 423
             ++   G +  + +    +L LGL
Sbjct: 1022 NEMRNRGIVPDLYTYNSLMLNLGL 1045



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 124/281 (44%), Gaps = 15/281 (5%)

Query: 170  VIRLFCEKGDMIAA----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            ++R+ C+    + A    D+  K +G+    P + +Y  +I         E A  LFK M
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGI---SPTLASYNCLIGELLEVHYTEKAWDLFKDM 814

Query: 226  KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
            K  GCA +   ++ LL    + G +    EL  EM      C P+ +TY  VI       
Sbjct: 815  KNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISR--RCKPDAITYNIVISSLAKSN 872

Query: 286  MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
             + +AL     + +    P   T   LI G    G L+EA +L +++   G   +   ++
Sbjct: 873  NLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFN 932

Query: 346  SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
             L+    +    + A +LF +M+  G++PD  + ++++  LCL G+V E    + +++  
Sbjct: 933  ILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKST 992

Query: 406  GFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            G    +D D   ++ ++ GL +     EA  L   M  + I
Sbjct: 993  G----LDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGI 1029



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 4/156 (2%)

Query: 123  EGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
            EG    +K   ++ + LC   R+ +EA++   ++    L PD I YN +I    +   M 
Sbjct: 957  EGIRPDLKSYTILVDCLCLAGRV-DEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRME 1015

Query: 182  AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
             A  L   M    + PD+ TY S++     AG +E A  +++ ++  G   ++  Y+AL+
Sbjct: 1016 EALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALI 1075

Query: 242  DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
             G     + E A  +   M  +G  C+PN+ TY  +
Sbjct: 1076 RGYSLSENPEHAYTVYKNMMVDG--CNPNIGTYAQL 1109


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 151/293 (51%), Gaps = 5/293 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  +  +M E  L P   IY  ++ ++ +   + AA  L++ M      P + TY  +IK
Sbjct: 249 AFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIK 308

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G    GR++DA  LF  M + GC  ++V  + L++ + R G +E AL+L G+M  +   C
Sbjct: 309 GLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKM--DSLQC 366

Query: 268 SPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           +PNVVTY +VI+ IF  K    EA    ++M+A G AP+  T + LI GFC    +++A 
Sbjct: 367 APNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKAL 426

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L++++   G       Y SL+  L R KR + A +LF ++  +  +      +VMI+  
Sbjct: 427 LLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHF 486

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
              G++ +   L+ + EK+G   S D   ++ L+ G+ R     EA  L R M
Sbjct: 487 GNCGRLSDAVDLFCEXEKLG--CSPDVYTYNALMSGMIRAGMIDEAHSLMRNM 537



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 182/398 (45%), Gaps = 16/398 (4%)

Query: 18  NSKIFALHFTTASPAERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQ 75
           N K+     +  +  ERF   L+  K  ++ EK +  +K K+D   V +VL      + +
Sbjct: 48  NRKVLRRDPSVRTLDERFIRILKIFKWGSDAEKAIEVLKLKVDHRLVHQVLD--IDVEIR 105

Query: 76  MGIRFFIWAALQSSYRHSSFMYN---RACEMS-RIKQNPSIIIDVVEAYKEEGCVVSVKM 131
             I+FF WA  +  ++H S  Y    R  E S  + +    I D++ +     C V    
Sbjct: 106 AKIQFFKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRS----PCSVGPAE 161

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM- 190
              I  +  KA++ N+A+ V  ++      P   +YN +I +   +G      EL   + 
Sbjct: 162 WSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEIC 221

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
              +  PD ITY ++I  F    R + A  LF  MK +G       Y+ +L    +L  +
Sbjct: 222 SEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKV 281

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E AL L+ EM+ +G  C+P V TYT +I+     G + +A  +   M   GC P+ V I+
Sbjct: 282 EAALRLVEEMKGKG--CAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLIN 339

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR-LKEAEKLFSKMLA 369
            LI      G L++A +L  K+ +     +   Y++++  +  +K    EA   F KM A
Sbjct: 340 NLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKA 399

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +G+ P     +++I   C   +V +   L E++++ GF
Sbjct: 400 NGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGF 437



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 139/300 (46%), Gaps = 5/300 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR-LFCEKGDM 180
           ++GC   V ++  + N+  +A    +A+ +  KM      P+ + YN VI+ +F  K   
Sbjct: 328 KDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPA 387

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A    + M    + P   TY  +I GFC   R+E A  L + M   G      AY +L
Sbjct: 388 SEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSL 447

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +D + R    E A EL  E+++  G  S  V  Y  +I+ F   G + +A+ +    E L
Sbjct: 448 IDSLGRAKRYEAANELFQELKENCGRSSARV--YAVMIKHFGNCGRLSDAVDLFCEXEKL 505

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GC+P+  T + L+ G    G +DEA+ L+  +   G       ++ ++  L +T   K A
Sbjct: 506 GCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRA 565

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            ++F+KM  S + PD ++ + ++  L   G       L  +++  GF    DS  +S +L
Sbjct: 566 IEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGF--EYDSITYSSIL 623



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           R    +Y  +I+ F   G +  A +L      +   PD+ TY +++ G   AG +++A  
Sbjct: 473 RSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHS 532

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L + M+ +GC  ++ +++ +L+G+ + G  +RA+E+  +M++   +  P+ V+Y +++  
Sbjct: 533 LMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKE--SEIMPDAVSYNTILSC 590

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               GM + A  ++  M+  G   + +T S++++     G +DE
Sbjct: 591 LSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAV---GKVDE 631


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 157/313 (50%), Gaps = 10/313 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC +A+   EA  +L  M E  ++P+   Y   I L+ + G++  A+   K M   
Sbjct: 527 LIIGLC-RAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSS 585

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ + Y  +IKG C+ G   +A   FK M   G   ++ AYSA++  + + G  + A
Sbjct: 586 GIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEA 645

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +  +  K G    P+V  Y S+I  FC +G +++A  + D M   G  PN V  +TLI
Sbjct: 646 MGVFLKFLKTG--VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLI 703

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G + +A +L D++     V     YS+++    ++  L EA KLF +M++ G+ 
Sbjct: 704 NGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGIS 763

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEK--IGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           PDG    ++I      G + +   L+ + ++  +G LS+ +S I S      C+    +E
Sbjct: 764 PDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDS-----FCKHGKVIE 818

Query: 432 AAKLARFMLKKRI 444
           A +L   M+ K++
Sbjct: 819 ARELFDDMVDKKL 831



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 156/325 (48%), Gaps = 5/325 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            C++ R + EA  +   MP   L P+   Y  +I  F ++G++  A  +   M    L  
Sbjct: 321 FCKQKR-SKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKL 379

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +++TY +MI G   AG +  A  LF  M   G   +   Y+ L+DG  +   M +A ELL
Sbjct: 380 NVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELL 439

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM+      +P+  TY+ +I   C    +++A  +LD+M   G  PN     TLIK + 
Sbjct: 440 AEMKAR--KLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYV 497

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            E   + A +L+  ++A G +    CY+ L++ L R K+++EA+ L   M   G+KP+  
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAH 557

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
                I      G++      ++D+   G +   ++ I+++L+ G C   ++VEA    +
Sbjct: 558 TYGAFINLYSKSGEIQVAERYFKDMLSSGIVP--NNVIYTILIKGHCDVGNTVEALSTFK 615

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSG 462
            ML+K +         I+  L K+G
Sbjct: 616 CMLEKGLIPDIRAYSAIIHSLSKNG 640



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 165/340 (48%), Gaps = 7/340 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E+G +  ++    I +   K     EAM V  K  +  + PD  +YN++I  FC++GD+ 
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIE 678

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L   M    + P+I+ Y ++I G C  G +  A  LF  ++      ++V YS ++
Sbjct: 679 KASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTII 738

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK-GMMKEALGILDRMEAL 300
           DG C+ G++  A +L  EM  +G   SP+   Y  +I   CGK G +++AL +    +  
Sbjct: 739 DGYCKSGNLTEAFKLFDEMISKG--ISPDGYIYCILID-GCGKEGNLEKALSLFHEAQQK 795

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
               +    ++LI  FC  G + EA +L D +V      +   Y+ L+    + + ++EA
Sbjct: 796 SVG-SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEA 854

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           E+LF  M    + P+ L  + ++      G   +   L++D+E  G   + D+  + V+ 
Sbjct: 855 EQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGI--ACDAIAYGVMA 912

Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
              C++  S+EA KL    L + I L+    D ++ HL K
Sbjct: 913 SAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCK 952



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 147/309 (47%), Gaps = 11/309 (3%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           + P+ ++YN +I   C+ G++  A EL   +   DL PD++TY ++I G+C +G L +A 
Sbjct: 692 INPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAF 751

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-GDCSPNVVTYTSVI 278
            LF  M   G + +   Y  L+DG  + G++E+AL L  E +++  G  S     + S+I
Sbjct: 752 KLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLS----AFNSLI 807

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             FC  G + EA  + D M      PN VT + LI  +     ++EA QL   +     +
Sbjct: 808 DSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNII 867

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y+SL++   +     +   LF  M A G+  D +A  VM    C  G+ LE   L
Sbjct: 868 PNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKL 927

Query: 399 YED--IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456
                +E I     ++ D+   L+  LC++       +L   M K+ + L     + ++ 
Sbjct: 928 LNKSLVEGI----KLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLL 983

Query: 457 HLKKSGDEE 465
              KSG+E+
Sbjct: 984 GFYKSGNED 992



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 138/285 (48%), Gaps = 4/285 (1%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L +M    L P    Y+ +I   C   D+  A+E++  M    + P++  Y ++IK + 
Sbjct: 438 LLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYV 497

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
              R E A  L K+M  +G   +L  Y+ L+ G+CR   +E A  LL +M ++G    PN
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKG--IKPN 555

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
             TY + I ++   G ++ A      M + G  PN V  + LIKG C  GN  EA     
Sbjct: 556 AHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFK 615

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
            ++  G +     YS+++  L +  + KEA  +F K L +GV PD    + +I   C  G
Sbjct: 616 CMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEG 675

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            + +   LY+++   G   ++   +++ L+ GLC+     +A +L
Sbjct: 676 DIEKASQLYDEMLHNGINPNI--VVYNTLINGLCKLGEVTKAREL 718



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 116/477 (24%), Positives = 210/477 (44%), Gaps = 51/477 (10%)

Query: 18  NSKIFALHFTTASPAERF---------------YTHLQKNPNNIEKTLATVKAKLDSTCV 62
           N  I  + F+T +P + +               +  L  N +N+ K        L+   V
Sbjct: 37  NVSIHFMFFSTNNPFDHYDDTVREFSMILKRKDWQILLNNEDNVRK--------LNPEIV 88

Query: 63  IEVLHRCFPSQSQMGIRFFIWAALQSS---YRHS-SFMYNRACEMSRIKQN--------- 109
             VL +     S     FF W++ + S   Y HS S +  R C    I Q          
Sbjct: 89  CSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLLQ 148

Query: 110 ----PSIIID-VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
               P  I+D +V  Y+E G   ++ +  +  +        NEA  V          P  
Sbjct: 149 TRKPPLEILDSLVRCYREFGGS-NLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTL 207

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           I  NN++R   +   M    ++   M    + PD+ TY ++IK  C  G +     +   
Sbjct: 208 ICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSE 267

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M++  C  NL  Y+A + G+C+ G+++ ALE+   M ++G    P+  TYT ++  FC +
Sbjct: 268 MEKE-CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKG--LGPDGHTYTLLVDGFCKQ 324

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
              KEA  I + M + G  PNR T + LI GF  EGN++EA ++ D+++  G   +   Y
Sbjct: 325 KRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTY 384

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++++  + +   + +A  LF++ML +G++PD    +++I        + +   L  +++ 
Sbjct: 385 NAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKA 444

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAA----KLARFMLKKRIWLQGPYVDKIVEH 457
                S  +  +SVL+ GLC  +   +A     ++ R  +K  +++ G  +   V+ 
Sbjct: 445 RKLTPSPFT--YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQE 499



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 115/268 (42%), Gaps = 37/268 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+   +  +A  +  ++ E DL PD + Y+ +I  +C+ G++  A +L   M   
Sbjct: 702 LINGLCKLGEVT-KARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISK 760

Query: 194 DLYPDIITYV----------------------------------SMIKGFCNAGRLEDAC 219
            + PD   Y                                   S+I  FC  G++ +A 
Sbjct: 761 GISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEAR 820

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF  M       N+V Y+ L+D   +   ME A +L  +ME    +  PN +TYTS++ 
Sbjct: 821 ELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETR--NIIPNTLTYTSLLL 878

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +   G   + + +   MEA G A + +    +   +C EG   EA +L++K +  G   
Sbjct: 879 SYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKL 938

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKM 367
               + +L+  L + K++    +L S+M
Sbjct: 939 EDDVFDALIFHLCKEKQISTVLELLSEM 966



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 4/215 (1%)

Query: 167  YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
            +N++I  FC+ G +I A EL   M    L P+I+TY  +I  +  A  +E+A  LF  M+
Sbjct: 803  FNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDME 862

Query: 227  RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
                  N + Y++LL    ++G+  + + L  +ME  G  C  + + Y  +   +C +G 
Sbjct: 863  TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIAC--DAIAYGVMASAYCKEGK 920

Query: 287  MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYS 345
              EAL +L++    G          LI   C E  +    +L+ ++     S+SS  C +
Sbjct: 921  SLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTC-N 979

Query: 346  SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            +L++   ++    EA K+   M   G  P  L+ +
Sbjct: 980  TLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLT 1014


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 183/383 (47%), Gaps = 16/383 (4%)

Query: 33  ERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSY 90
           ERF   L+  K   + EK L  +K K+D   V EVL      +  + I+FF WA  + ++
Sbjct: 63  ERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLK--IDVEIHVKIQFFKWAGKRRNF 120

Query: 91  RHSSFMYNRAC----EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
            H S  Y        E   + +    I ++V +     CV+    +  I  +  KA++ N
Sbjct: 121 EHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRS----TCVIGPADLSEIVKVLGKAKMVN 176

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDIITYVSM 205
           +A+ +  ++     +P +  YN++I +  ++G      EL   M    D  PD +TY ++
Sbjct: 177 KALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSAL 236

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  F   GR + A  LF  MK +G       Y+ +L    +LG +E+AL L+ EM+++G 
Sbjct: 237 IAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKG- 295

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C+  V TYT +I+     G ++EA  I   M   GC P+ V I+ LI      G L +A
Sbjct: 296 -CALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADA 354

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIR 384
            +L +++ +     +   Y++++  L  +K R  EA   + KM  +GV P     S++I 
Sbjct: 355 IKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILID 414

Query: 385 ELCLGGQVLEGFCLYEDIEKIGF 407
             C   +V +   L E++++ GF
Sbjct: 415 GFCKTNRVEKALLLLEEMDEKGF 437



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 150/330 (45%), Gaps = 38/330 (11%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + +V+  KE+GC ++V     +     KA    EA  +   M +   +PD ++ NN+I L
Sbjct: 285 LGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINL 344

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG-FCNAGRLEDACGLFKVMKRHGCAA 232
             + G +  A +L + M  +   P+++TY ++IK  F +  R  +A   ++ MK +G   
Sbjct: 345 LGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVP 404

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----------- 281
           +   YS L+DG C+   +E+AL LL EM+++G   +P    Y S+I              
Sbjct: 405 SSFTYSILIDGFCKTNRVEKALLLLEEMDEKG--FAPCPAAYCSLINALGKAKRYEAANE 462

Query: 282 --------CGK----------------GMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
                   CG                 G + EA+ + + M+ LGC P+    + L+ G  
Sbjct: 463 LFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMV 522

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G  DEA+ L+  +   G       ++ ++    RT   K A ++F++M  S +KPD +
Sbjct: 523 RVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVV 582

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           + + ++  L   G   E   L +++   GF
Sbjct: 583 SYNTVLGCLSRAGMFEEAAKLMKEMNSKGF 612



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 2/231 (0%)

Query: 118 EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           E  KE G V S     ++ +   K     +A+ +L +M E    P    Y ++I    + 
Sbjct: 395 EKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKA 454

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
               AA+EL + +     Y     Y  MIK     GRL +A  LF  MK+ GC  ++ AY
Sbjct: 455 KRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAY 514

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           +AL+ G+ R+G  + A  LL  ME+ G  C+P++ ++  ++  F   G  K A+ +  RM
Sbjct: 515 NALMSGMVRVGMTDEAHSLLRTMEENG--CTPDLNSHNIILNGFARTGGPKGAIEMFTRM 572

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +     P+ V+ +T++      G  +EA +L+ ++ + G       YSS++
Sbjct: 573 KNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSIL 623



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 63/134 (47%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+    K+ GC   V     + +   +  + +EA  +LR M E    PD   +N ++  
Sbjct: 496 VDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNG 555

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           F   G    A E+   M    + PD+++Y +++     AG  E+A  L K M   G   +
Sbjct: 556 FARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYD 615

Query: 234 LVAYSALLDGICRL 247
           L+ YS++L+ + ++
Sbjct: 616 LITYSSILEAVGKI 629


>gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 152/316 (48%), Gaps = 5/316 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V   KV+  LC+  R+  E + VL ++       D + YN +I+ FC  G       ++K
Sbjct: 335 VTATKVVGILCKAGRVT-EGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLK 393

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +    P++ TY  +  G+C++G L+ A  LF  MK  G   N + Y  L+ G+C  G
Sbjct: 394 DMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGG 453

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ME   ++L  ME+  G     +  Y S+I     K   +EAL  L +ME L   P  V 
Sbjct: 454 RMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKL--FPRAVD 511

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S  I GFC EG++ +A ++ D+++  G V S   Y  L+    +   ++EA +L ++M+
Sbjct: 512 RSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMV 571

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G  P     + +I   C  G+V     L ED+   G L  + S  +S ++  LC K  
Sbjct: 572 DHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGS--YSPMVDALCNKGD 629

Query: 429 SVEAAKLARFMLKKRI 444
             +A +L   M++K I
Sbjct: 630 FQKAVRLFLQMVEKDI 645



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 182/404 (45%), Gaps = 39/404 (9%)

Query: 72  SQSQMGIRFFIWAALQSSYRHSSFMY----NRACEMSRIKQNPSIIIDVVEAYKEEGCVV 127
           S SQ  ++ F WA+   ++ H+   Y    ++ C   R +    ++ ++  +    G   
Sbjct: 106 SASQ-ALQTFRWASNLPNFIHNQSTYRALIHKLCSFRRFETVKEVLDEMPSSI---GSPP 161

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
              +   I     +AR+  + + VL  + +F   P   I+N+++ +  ++   +A +   
Sbjct: 162 DESIFVTIVRGLGRARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVKEDIDLAREFYR 221

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           K M +  +  D  T+  ++KG C   R+ DA  L +VMK  G   N V Y+ ++  +C+ 
Sbjct: 222 KKMMMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKN 281

Query: 248 GSMERALELLGEMEKEGGDCS------------------------------PNVVTYTSV 277
           G + RA  L+ EM  E  D +                              P+VVT T V
Sbjct: 282 GKVGRARSLMNEM-VEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKV 340

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           + I C  G + E + +L+R+E++G   + V  +TLIKGFC+ G     ++++  +   G 
Sbjct: 341 VGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGC 400

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
           + +   Y+ L      +  L  A  LF+ M   G+  + +    +IR LC GG++ +GF 
Sbjct: 401 LPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFK 460

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           + E +E+    +      ++ ++ GL +KN   EA +    M K
Sbjct: 461 ILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEK 504



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 156/338 (46%), Gaps = 47/338 (13%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI---FNLCEKARLANEAMWVLRKMPE 157
           C+  R+ +     ++V+E  +  G VV V     +   F +  KA++ +    VL+ M  
Sbjct: 345 CKAGRVTEG----VEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHR---VLKDMEI 397

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
               P+   YN +   +C+ G + +A +L   M    +  + +TY ++I+G C+ GR+ED
Sbjct: 398 KGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMED 457

Query: 218 ACGLFKVMK--RHGCAANLVAYSALLDGICRLGSMERALELLGEMEK------------- 262
              + ++M+  R G    +  Y++++ G+ +    E ALE L +MEK             
Sbjct: 458 GFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLRIL 517

Query: 263 ----EG--GDCS------------PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
               EG  GD              P+V+ Y  +I  FC  G ++EA  +++ M   G  P
Sbjct: 518 GFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFP 577

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + LI  FC +G +  A +L++ +V  G +   G YS +V  L      ++A +LF
Sbjct: 578 TAPTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLF 637

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQV--LEGFCLYE 400
            +M+   + PD    + M+  LCL  +   LEG  L+ 
Sbjct: 638 LQMVEKDILPDYSTWNSML--LCLTQETVWLEGDNLFH 673



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN++I    +K     A E +  M    L+P  +     I GFCN G + DA  ++  M 
Sbjct: 479 YNSIIYGLYKKNQFEEALEFLTKME--KLFPRAVDRSLRILGFCNEGSIGDAKRVYDQMI 536

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           + G   +++ Y  L+ G C+ G++  A EL+ EM   G    P   T+ ++I  FCG+G 
Sbjct: 537 KEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHG--YFPTAPTFNALISAFCGQGK 594

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +  AL +++ M   GC P+  + S ++   C +G+  +A +L  ++V    +     ++S
Sbjct: 595 VGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYSTWNS 654

Query: 347 LVVELVRTKRLKEAEKLFSKMLASG 371
           +++ L +     E + LF   L  G
Sbjct: 655 MLLCLTQETVWLEGDNLFHLQLQDG 679


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 157/299 (52%), Gaps = 4/299 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V M   I +   K +L N+A  +  +M    + PD + Y+++I  FC  G +  A +L 
Sbjct: 197 NVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLF 256

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M   ++ P++ T+  +I GFC  G++ +A  +  VM +     ++V Y++L+DG C +
Sbjct: 257 NRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLV 316

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             + +A  L   M + G   +P+V +Y+ +I  FC   M+ EA+ + + M      PN V
Sbjct: 317 KQVNKAKSLFNVMAQRG--VTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVV 374

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T ++L+ G C  G    A +L+D++   G  S+   Y+S++  + +   + +A  L +K+
Sbjct: 375 TYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKI 434

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
              G++PD    +V+I  LC  G++ +   ++ED+   G+  ++ +  ++ L+ G C K
Sbjct: 435 KEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYT--YTSLINGFCNK 491



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 151/295 (51%), Gaps = 4/295 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +  +M   ++ P+   ++ +I  FC++G +  A  ++  M   ++  D++TY S++ 
Sbjct: 252 AVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMD 311

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G+C   ++  A  LF VM + G   ++ +YS +++G C++  ++ A++L  EM  +    
Sbjct: 312 GYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCK--QI 369

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PNVVTY S++   C  G    AL ++D M   G   N +T ++++   C   ++D+A  
Sbjct: 370 FPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIV 429

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ K+   G       Y+ L+  L +  RL +A+K+F  +L  G  P+    + +I   C
Sbjct: 430 LLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFC 489

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             G   EG  +   ++  G + +  +  + +L+  L  K+ + +A KL R M+ +
Sbjct: 490 NKGFFDEGLAMLSKMKDNGCIPNAIT--YEILIHSLFEKDENDKAEKLLREMIAR 542



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 163/327 (49%), Gaps = 14/327 (4%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM-----IAADELMKGMGLIDL 195
           KA+    A+ + ++M    ++PD I  N ++  F + G +     + A  L KG      
Sbjct: 70  KAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGY----- 124

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
           +PD +T+  +IKG C  G +  A      +   G   + V+Y  L++G+CR+G  + A++
Sbjct: 125 HPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQ 184

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           LL  ++  G    PNVV Y+++I   C   ++ +A  +   M +   +P+ VT S+LI G
Sbjct: 185 LLRRVD--GKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISG 242

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           FCV G L  A  L +++++     +   +S L+    +  +++EA+ + + M+   VK D
Sbjct: 243 FCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLD 302

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  + ++   CL  QV +   L+  + + G    V S  +S+++ G C+     EA KL
Sbjct: 303 VVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWS--YSIMINGFCKIKMVDEAMKL 360

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              M  K+I+      + +V+ L KSG
Sbjct: 361 FEEMHCKQIFPNVVTYNSLVDGLCKSG 387



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 123/231 (53%), Gaps = 2/231 (0%)

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
            +  N+A  +   M +  + PD   Y+ +I  FC+   +  A +L + M    ++P+++T
Sbjct: 316 VKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVT 375

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y S++ G C +GR   A  L   M   G  +N++ Y+++LD IC+   +++A+ LL +++
Sbjct: 376 YNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIK 435

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           ++G    P++ TYT +I   C  G + +A  + + +   G +PN  T ++LI GFC +G 
Sbjct: 436 EKG--IQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGF 493

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
            DE   ++ K+   G + +   Y  L+  L       +AEKL  +M+A G+
Sbjct: 494 FDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 173/354 (48%), Gaps = 10/354 (2%)

Query: 83  WAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVE-AYKEEGCVVSVKMMKVIFNLCEK 141
           +  ++  +   + + N   ++  IK + S+   +++  Y  +    ++    +I  LC K
Sbjct: 86  FNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTI----LIKGLCLK 141

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
             + ++A++   K+     + D + Y  +I   C  G+  AA +L++ +    + P+++ 
Sbjct: 142 GEV-HKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVM 200

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y ++I   C    + DA  L+  M     + ++V YS+L+ G C +G ++ A++L   M 
Sbjct: 201 YSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMI 260

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            +  + +PNV T++ +I  FC +G ++EA  +L  M       + VT ++L+ G+C+   
Sbjct: 261 SD--NINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQ 318

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +++A  L + +   G       YS ++    + K + EA KLF +M    + P+ +  + 
Sbjct: 319 VNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNS 378

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           ++  LC  G+      L +++   G  S++ +  ++ +L  +C+ NH  +A  L
Sbjct: 379 LVDGLCKSGRTSCALELVDEMHDRGQPSNIIT--YNSILDAICKNNHVDKAIVL 430



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 126/253 (49%), Gaps = 8/253 (3%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P  I +  ++     A + + A  L + M+ +G   + +  + L++   +LG ++ +  +
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             ++ K+G    P+ VT+T +I+  C KG + +AL   D++ A G   ++V+  TLI G 
Sbjct: 116 FAKILKKG--YHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGL 173

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G    A QL+ +V       +   YS+++  + + K + +A  L+ +M++  + PD 
Sbjct: 174 CRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDV 233

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH--SVLLLGLCRKNHSVEAAK 434
           +  S +I   C+ G++     L+  +       +++ +++  S+L+ G C++    EA  
Sbjct: 234 VTYSSLISGFCVVGKLKYAVDLFNRM----ISDNINPNVYTFSILIDGFCKEGKVREAKN 289

Query: 435 LARFMLKKRIWLQ 447
           +   M+KK + L 
Sbjct: 290 VLAVMMKKNVKLD 302



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 110/254 (43%), Gaps = 42/254 (16%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRC---FPSQSQMGIRFFIWAALQSSYRHSSFMYNRAC 101
           N++  + T  + +D  C+++ +++    F   +Q G+   +W     SY   S M N  C
Sbjct: 298 NVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVW-----SY---SIMINGFC 349

Query: 102 EMSRIKQN-------------PSII------------------IDVVEAYKEEGCVVSVK 130
           ++  + +              P+++                  +++V+   + G   ++ 
Sbjct: 350 KIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNII 409

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
               I +   K    ++A+ +L K+ E  ++PD   Y  +I   C+ G +  A ++ + +
Sbjct: 410 TYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDL 469

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
            +    P+I TY S+I GFCN G  ++   +   MK +GC  N + Y  L+  +      
Sbjct: 470 LVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDEN 529

Query: 251 ERALELLGEMEKEG 264
           ++A +LL EM   G
Sbjct: 530 DKAEKLLREMIARG 543


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 180/389 (46%), Gaps = 24/389 (6%)

Query: 53  VKAKLDSTCVI---EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFM-YNRACEMSRIKQ 108
           +K  L   C I    +L +CF S S++      +  L     H + + +N       ++ 
Sbjct: 5   IKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVED 64

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
             S  +D+     +   V    +M     LC + R+  EA+ +L +M E  L+P+ I Y 
Sbjct: 65  RVSEALDLFHQMCKPNVVTFTTLMN---GLCREGRVV-EAVALLDRMVEDGLQPNQITYG 120

Query: 169 NVIRLFCEKGDMIAADELMKGMG-LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
            ++   C+ GD ++A  L++ M  L  + PD++ Y ++I G    GR  DA  LF  M+ 
Sbjct: 121 TIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQD 180

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   ++V YS +++G C  G    A  LL EM       SP+VVT++ +I     +G +
Sbjct: 181 KGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVR--KISPDVVTFSGLINALVKEGDL 238

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL----------IDKVVAGGS 337
             A  +L  M + G  PN VT +TL+ G C  G L +A ++          ID   A   
Sbjct: 239 NSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNG 298

Query: 338 VSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
           V      Y+ L+  L+   +  EAE+L+ +M   G+ PD +  S MI  LC   ++ E  
Sbjct: 299 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEAT 358

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            +++ +    F  ++ +   + L+ G C+
Sbjct: 359 QMFDSMGSKSFSPNIVT--FNTLITGYCK 385



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 150/306 (49%), Gaps = 14/306 (4%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+    K+ +    P  + +N ++   C +  +  A +L   M      P+++T+ +++ 
Sbjct: 34  ALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMN 89

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  GR+ +A  L   M   G   N + Y  ++DG+C++G    AL LL +ME E    
Sbjct: 90  GLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME-ELSHI 148

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+VV Y+++I      G   +A  +   M+  G  P+ VT S +I GFC  G   EA +
Sbjct: 149 KPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQR 208

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ +++          +S L+  LV+   L  A+ L  +M++SGV P+ + C+ ++  LC
Sbjct: 209 LLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLC 268

Query: 388 LGGQVLEGFCLYE-------DIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARF 438
             G++ +   +++       DI+     + V+ D+  +++L+ GL  +   +EA +L   
Sbjct: 269 DSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEE 328

Query: 439 MLKKRI 444
           M  + I
Sbjct: 329 MPHRGI 334



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 138/275 (50%), Gaps = 14/275 (5%)

Query: 148 AMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           A+ +LRKM E   ++PD +IY+ +I    + G    A  L   M    ++PDI+TY  MI
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC++G+  +A  L + M     + ++V +S L++ + + G +  A +LL EM   G  
Sbjct: 195 NGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSG-- 252

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----------GCAPNRVTISTLIKG 315
             PNVVT  +++   C  G +K+AL +   M+             G  P+  T + LI G
Sbjct: 253 VCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISG 312

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
              EG   EA +L +++   G V     YSS++  L +  RL EA ++F  M +    P+
Sbjct: 313 LINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPN 372

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
            +  + +I   C  G V +G  L+ ++ + G +++
Sbjct: 373 IVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVAN 407



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 145/281 (51%), Gaps = 14/281 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   + + EA  +L++M    + PD + ++ +I    ++GD+ +A +L++ M   
Sbjct: 193 MINGFCSSGKWS-EAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISS 251

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCAANLVAYSALLD 242
            + P+++T  +++ G C++G+L+DA  +FK M++           +G   ++  Y+ L+ 
Sbjct: 252 GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILIS 311

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+   G    A EL  EM   G    P+ VTY+S+I   C +  + EA  + D M +   
Sbjct: 312 GLINEGKFLEAEELYEEMPHRG--IVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSF 369

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
           +PN VT +TLI G+C  G +D+  +L  ++   G V++   Y +L+    +   +  +  
Sbjct: 370 SPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLD 429

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           +F +M++SGV PD +    M+  L    ++     + E+++
Sbjct: 430 IFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEELQ 470



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 116/236 (49%), Gaps = 13/236 (5%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--GLIDL-------- 195
           N A  +L++M    + P+ +  N ++   C+ G +  A E+ K M   ++D+        
Sbjct: 239 NSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNG 298

Query: 196 -YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             PD+ TY  +I G  N G+  +A  L++ M   G   + V YS++++G+C+   ++ A 
Sbjct: 299 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEAT 358

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           ++   M  +    SPN+VT+ ++I  +C  GM+ + L +   M   G   N +T  TLI+
Sbjct: 359 QMFDSMGSKS--FSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIR 416

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           GF   GN++ +  +  ++++ G         +++  L   + LK A  +  ++  S
Sbjct: 417 GFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEELQMS 472



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 102/200 (51%), Gaps = 6/200 (3%)

Query: 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEF 158
           A EM +  Q   + ID   A+   G    V+   ++ + L  + +   EA  +  +MP  
Sbjct: 276 ALEMFKAMQKSMMDIDATHAFN--GVEPDVQTYNILISGLINEGKFL-EAEELYEEMPHR 332

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            + PDT+ Y+++I   C++  +  A ++   MG     P+I+T+ ++I G+C AG ++D 
Sbjct: 333 GIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDG 392

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             LF  M R G  AN + Y  L+ G  ++G++  +L++  EM   G    P+ +T  +++
Sbjct: 393 LELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSG--VYPDTITIRNML 450

Query: 279 QIFCGKGMMKEALGILDRME 298
                K  +K AL +L+ ++
Sbjct: 451 TGLWSKEELKRALAMLEELQ 470



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 5/184 (2%)

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           K G     ++ ++  +I+ FC    +  AL    ++  LG  P  VT +TL+ G CVE  
Sbjct: 6   KHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDR 65

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           + EA  L  ++     V+    +++L+  L R  R+ EA  L  +M+  G++P+ +    
Sbjct: 66  VSEALDLFHQMCKPNVVT----FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 121

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           ++  +C  G  +    L   +E++  +   D  I+S ++ GL +     +A  L   M  
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKP-DVVIYSAIIDGLWKDGRHTDAQNLFIEMQD 180

Query: 442 KRIW 445
           K I+
Sbjct: 181 KGIF 184


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 147/290 (50%), Gaps = 12/290 (4%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L KM E  ++PD +IY+ +I   C+ G    A  L   M    + P++ TY  MI 
Sbjct: 280 ALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMID 339

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC+ GR  DA  L + M       +++ ++AL+    + G +  A +L  EM       
Sbjct: 340 GFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC--I 397

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+ VTY S+I  FC      +A  + D M     +P+ VT +T+I  +C    +DE  Q
Sbjct: 398 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQ 453

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ ++   G V++   Y++L+        L  A+ LF +M++ GV PD + C++++   C
Sbjct: 454 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFC 513

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKL 435
              ++ E   L+E I+    +S +D D   +++++ G+C+ +   EA  L
Sbjct: 514 ENEKLEEALELFEVIQ----MSKIDLDTVAYNIIIHGMCKGSKVDEAWDL 559



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 142/294 (48%), Gaps = 8/294 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ +  +M E  L P  I +N +I   C +G ++ A  L+  M    L+ D++TY +++
Sbjct: 209 EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 268

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C  G  + A  L   M+      ++V YSA++D +C+ G    A  L  EM ++G  
Sbjct: 269 NGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG-- 326

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            +PNV TY  +I  FC  G   +A  +L  M      P+ +T + LI     EG L EA 
Sbjct: 327 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAE 386

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L D+++          Y+S++    +  R  +A+ +F  M +    PD +  + +I   
Sbjct: 387 KLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVY 442

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           C   +V EG  L  +I + G +++  +  ++ L+ G C  ++   A  L + M+
Sbjct: 443 CRAKRVDEGMQLLREISRRGLVANTTT--YNTLIHGFCEVDNLNAAQDLFQEMI 494



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 137/300 (45%), Gaps = 25/300 (8%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFC----------------EKGDMIAADELMKGMGLIDLYP 197
           K+ +   +PD + +N ++   C                E G  + A  L   M  I L P
Sbjct: 166 KLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG-FLEAVALFDQMVEIGLTP 224

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            +IT+ ++I G C  GR+ +A  L   M   G   ++V Y  +++G+C++G  + AL LL
Sbjct: 225 VVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLL 284

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +ME+      P+VV Y+++I   C  G   +A  +   M   G APN  T + +I GFC
Sbjct: 285 SKMEET--HIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFC 342

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G   +A +L+  ++          +++L+   V+  +L EAEKL  +ML   + PD +
Sbjct: 343 SFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTV 402

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + MI   C   +  +   +++       ++S D    + ++   CR     E  +L R
Sbjct: 403 TYNSMIYGFCKHNRFDDAKHMFD------LMASPDVVTFNTIIDVYCRAKRVDEGMQLLR 456



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 34/305 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R + +A  +LR M E ++ PD + +N +I    ++G +  A++L   M   
Sbjct: 337 MIDGFCSFGRWS-DAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHR 395

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVM---------------------------- 225
            ++PD +TY SMI GFC   R +DA  +F +M                            
Sbjct: 396 CIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLL 455

Query: 226 ---KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
               R G  AN   Y+ L+ G C + ++  A +L  EM   G    P+ +T   ++  FC
Sbjct: 456 REISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHG--VCPDTITCNILLYGFC 513

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
               ++EAL + + ++      + V  + +I G C    +DEA+ L   +   G      
Sbjct: 514 ENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQ 573

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y+ ++        + +A  LF KM  +G +PD    + +IR     G++ +   L  ++
Sbjct: 574 TYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 633

Query: 403 EKIGF 407
              GF
Sbjct: 634 RSNGF 638



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 127/277 (45%), Gaps = 24/277 (8%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N VI +F        A  L + M +  +  +I ++  +IK FC+  +L  +   F  + +
Sbjct: 110 NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTK 169

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   ++V ++ LL G+C    +  AL L G M + G                       
Sbjct: 170 LGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG----------------------F 207

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            EA+ + D+M  +G  P  +T +TLI G C+EG + EA  L++K+V  G       Y ++
Sbjct: 208 LEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI 267

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           V  + +    K A  L SKM  + +KPD +  S +I  LC  G   +   L+ ++ + G 
Sbjct: 268 VNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGI 327

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             +V +  ++ ++ G C      +A +L R M+++ I
Sbjct: 328 APNVFT--YNCMIDGFCSFGRWSDAQRLLRDMIEREI 362



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLR--KMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           C  ++    +++  CE  +L  EA+ +    +M + DL  DT+ YN +I   C+   +  
Sbjct: 499 CPDTITCNILLYGFCENEKL-EEALELFEVIQMSKIDL--DTVAYNIIIHGMCKGSKVDE 555

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A +L   + +  + PD+ TY  MI GFC    + DA  LF  MK +G   +   Y+ L+ 
Sbjct: 556 AWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 615

Query: 243 GICRLGSMERALELLGEMEKEG 264
           G  + G +++++EL+ EM   G
Sbjct: 616 GCLKAGEIDKSIELISEMRSNG 637



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   CE   L N A  + ++M    + PDTI  N ++  FCE   +  A EL + + + 
Sbjct: 473 LIHGFCEVDNL-NAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMS 531

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  D + Y  +I G C   ++++A  LF  +  HG   ++  Y+ ++ G C   ++  A
Sbjct: 532 KIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDA 591

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
             L  +M+  G +  P+  TY ++I+     G + +++ ++  M + G + +  TI
Sbjct: 592 NVLFHKMKDNGHE--PDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTI 645



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  +C+ +++ +EA  +   +P   + PD   YN +I  FC K  +  A+ L   M   
Sbjct: 543 IIHGMCKGSKV-DEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDN 601

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
              PD  TY ++I+G   AG ++ +  L   M+ +G + +        + ICR+   E
Sbjct: 602 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIICRVSDEE 659



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 19/202 (9%)

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK----- 331
           VI +F        A+ +  +ME      N  + + LIK FC    L  +     K     
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171

Query: 332 ----VVAGGSVSSGGCYSSLVVE-------LVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
               VV   ++  G C    + E       +V T  L EA  LF +M+  G+ P  +  +
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFL-EAVALFDQMVEIGLTPVVITFN 230

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            +I  LCL G+VLE   L   +  +G    +D   +  ++ G+C+   +  A  L   M 
Sbjct: 231 TLINGLCLEGRVLEAAALVNKM--VGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME 288

Query: 441 KKRIWLQGPYVDKIVEHLKKSG 462
           +  I         I++ L K G
Sbjct: 289 ETHIKPDVVIYSAIIDRLCKDG 310


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 139/275 (50%), Gaps = 6/275 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + YN ++  +C+ G    A  LMK +      P++ TY  +I  +C   ++E+A  +
Sbjct: 206 PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEV 265

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  M    C  N V ++ L+ G C+ G +E A++L  EMEK G  C   +VTY ++I   
Sbjct: 266 FMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIG--CKATIVTYNTLIDSL 323

Query: 282 CGK-GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           C K G +  A+ + +++E  G  P  VT ++LI+GFC    L EA Q  D+ + G    +
Sbjct: 324 CKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDE-MEGKCAPN 382

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              YS L+  L + +R+KEA K    M A G  P  +    +I   C  G++      +E
Sbjct: 383 VITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFE 442

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            ++  G   + ++ I + L+ GLC+   + +  +L
Sbjct: 443 KMKLAG--CAPNTVIFNTLIDGLCKAERANDGLRL 475



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 158/335 (47%), Gaps = 17/335 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++ +  +  S++ ++++A  E     +V    +I N   K     EA  V  KM E + 
Sbjct: 219 CKIGQTYEAQSLMKEILKAGYEP----NVFTYSIIINCYCKLDKVEEAWEVFMKMIESNC 274

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA-GRLEDAC 219
            P+ + +N +I  FC+ G +  A +L   M  I     I+TY ++I   C   G +  A 
Sbjct: 275 VPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAV 334

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF  ++  G    +V Y++L+ G C    +  A++   EME   G C+PNV+TY+ +I 
Sbjct: 335 DLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEME---GKCAPNVITYSILID 391

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C    MKEA   L+ M+A G  P  VT   LI GFC  G L  A    +K+   G   
Sbjct: 392 GLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAP 451

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   +++L+  L + +R  +  +L   M A G KPD +  + +I  LC   +V       
Sbjct: 452 NTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRV------- 504

Query: 400 EDIEKI--GFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           ED +++  G   + +    + L+ GLC +    EA
Sbjct: 505 EDAQRLFDGMACAPNVTTFNFLIRGLCAQKKVEEA 539



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 103/202 (50%), Gaps = 7/202 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  RL+ EAM    +M E    P+ I Y+ +I   C+   M  A + ++
Sbjct: 350 VTYNSLIQGFCDARRLS-EAMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKEAAKTLE 407

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P ++TY  +I GFC  G L+ A   F+ MK  GCA N V ++ L+DG+C+  
Sbjct: 408 DMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAE 467

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
                L LL  M  EG  C P+V+TY  +I   C    +++A  + D M    CAPN  T
Sbjct: 468 RANDGLRLLCHMHAEG--CKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTT 522

Query: 309 ISTLIKGFCVEGNLDEAYQLID 330
            + LI+G C +  ++EA  ++D
Sbjct: 523 FNFLIRGLCAQKKVEEARNILD 544



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 167/371 (45%), Gaps = 21/371 (5%)

Query: 73  QSQMGIRFF--IWAALQSSYRHSSFMYNRA-CEMSRIKQNPSIIIDVVEAYKEEGCVVSV 129
           +    +R F  + A L +   H+  +  R  C+  ++ Q  S+  D+    K  G + + 
Sbjct: 12  KHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDM----KSSGLLPNA 67

Query: 130 KMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
             M  ++  LCE  ++++ A+ + R+M      P +  +N ++R F   G +  A   ++
Sbjct: 68  STMNTLLLGLCEIGQMSS-ALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQ 126

Query: 189 GMGLIDLYPDIITYVSMIKGFC----NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            M          TY  ++KG C    +A RLE A   FK MK  G   +L +Y  LL  +
Sbjct: 127 DMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSAL 186

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
              G M  A  L   M      CSP+++TY  ++  +C  G   EA  ++  +   G  P
Sbjct: 187 SDSGRMAEAHALFSAMT-----CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEP 241

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N  T S +I  +C    ++EA+++  K++    V +   +++L+    +   L++A KLF
Sbjct: 242 NVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLF 301

Query: 365 SKMLASGVKPDGLACSVMIRELCLG-GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           ++M   G K   +  + +I  LC   G V     L+  +E  G   ++ +  ++ L+ G 
Sbjct: 302 AEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVT--YNSLIQGF 359

Query: 424 CRKNHSVEAAK 434
           C      EA +
Sbjct: 360 CDARRLSEAMQ 370



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 148/331 (44%), Gaps = 46/331 (13%)

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           AR  ++A+ + +++      P+   YN +IR FC+ G M  A  +   M    L P+  T
Sbjct: 10  ARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNAST 69

Query: 202 YVSMIKGFCN-----------------------------------AGRLEDACGLFKVMK 226
             +++ G C                                    AGR+ DA    + M+
Sbjct: 70  MNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMR 129

Query: 227 RHGCAANLVAYSALLDGIC----RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           +   +     Y+ +L G+C        +E+A+E   EM+  G +  P++ +Y  ++    
Sbjct: 130 KSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVE--PDLESYHILLSALS 187

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G M EA  +     A+ C+P+ +T + L+ G+C  G   EA  L+ +++  G   +  
Sbjct: 188 DSGRMAEAHALFS---AMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVF 244

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            YS ++    +  +++EA ++F KM+ S   P+ +  + +I   C  G + +   L+ ++
Sbjct: 245 TYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEM 304

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           EKIG  +++ +  ++ L+  LC+K   V  A
Sbjct: 305 EKIGCKATIVT--YNTLIDSLCKKRGGVYTA 333



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 15/286 (5%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+  TY  +I+GFC  G++  A  +F  MK  G   N    + LL G+C +G M  AL+L
Sbjct: 30  PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKL 89

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             EM  + G   P   ++  +++ F   G +++AL  L  M     +    T + ++KG 
Sbjct: 90  FREM--QAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGL 147

Query: 317 CVEGN----LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           C E      L++A +   ++ A G       Y  L+  L  + R+ EA  LFS M  S  
Sbjct: 148 CWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCS-- 205

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD +  +V++   C  GQ  E   L ++I K G+  +V +  +S+++   C+ +   EA
Sbjct: 206 -PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFT--YSIIINCYCKLDKVEEA 262

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE----LITNLPKIG 474
            ++   M++          + ++    K+G  E    L   + KIG
Sbjct: 263 WEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIG 308



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 11/242 (4%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           +++ G  +A + + A  LFK +     A N   Y+ L+ G C+ G M +A+ +  +M+  
Sbjct: 2   ALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSS 61

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G    PN  T  +++   C  G M  AL +   M+A    P   + + L++GF + G + 
Sbjct: 62  G--LLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVR 119

Query: 324 EAYQLIDKVVAGGSVSSGGCYS----SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           +A   +  +    S  + G Y+     L  E     RL++A + F +M ASGV+PD  + 
Sbjct: 120 DALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESY 179

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            +++  L   G++ E   L+  +       S D   ++VL+ G C+   + EA  L + +
Sbjct: 180 HILLSALSDSGRMAEAHALFSAMT-----CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEI 234

Query: 440 LK 441
           LK
Sbjct: 235 LK 236


>gi|242061532|ref|XP_002452055.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
 gi|241931886|gb|EES05031.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
          Length = 810

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 182/399 (45%), Gaps = 53/399 (13%)

Query: 116 VVEAYKEEGCV--------------VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR 161
           +V A  E GCV               +V    V+  LC   R  ++   ++ +M    L 
Sbjct: 381 LVNALSERGCVDDALELLRTIPWKPNTVCYRSVLKGLCRADRW-DDVGKLVAEMIRNQLN 439

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
            D + +  +I   C+KG +    E+++ M      PDII Y S+I GF   G ++DA  L
Sbjct: 440 LDEVTFGLIIDCLCQKGLVDYGAEVLREMTKFGCSPDIIIYNSLINGFSENGSVDDALEL 499

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           FK M    C  N+V Y+ +L G+CR    E A +L+ EM K+  +C PN VT++++I   
Sbjct: 500 FKNM---SCKRNVVTYNYMLKGLCRAEQWEDAGKLVAEMVKD--ECLPNEVTFSTLISYL 554

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C KG ++ A+ + ++M    C PN +  STLI G   +  +D+A +L++ +         
Sbjct: 555 CQKGFVECAIEVFEKMPKYNCMPNVIIYSTLINGLSDQECVDDALKLLNDMPCKPDTI-- 612

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG------QVLEG 395
            CYS+ +  L R +R ++A +L  +M+     PD +  S++I  LC  G      +V E 
Sbjct: 613 -CYSAALKGLCRAERWEDAGELILEMIRKNCLPDEVTFSILINNLCHKGFLESATEVSEL 671

Query: 396 FCLYEDIEKIGFLSSV------------------------DSDIHSVLLLGLCRKNHSVE 431
              YE +  +   SS+                        D+  +S  L GLCR     +
Sbjct: 672 MLKYECMPNVFIYSSLINGFAEQYRAEDALQLLRNMPCEPDTICYSAALKGLCRAKRWED 731

Query: 432 AAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           A +L   M +K+  L       ++  L ++G  ++ T +
Sbjct: 732 ARELIAEMFRKQCPLDEATFSMLIGSLCQNGLVDMATEV 770



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 158/371 (42%), Gaps = 74/371 (19%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+K  L +    VLR+M +F   PD IIYN++I  F E G +  A EL K M   
Sbjct: 448 IIDCLCQKG-LVDYGAEVLREMTKFGCSPDIIIYNSLINGFSENGSVDDALELFKNMSCK 506

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDA---------------------------------CG 220
               +++TY  M+KG C A + EDA                                 C 
Sbjct: 507 R---NVVTYNYMLKGLCRAEQWEDAGKLVAEMVKDECLPNEVTFSTLISYLCQKGFVECA 563

Query: 221 L--FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME----------------- 261
           +  F+ M ++ C  N++ YS L++G+     ++ AL+LL +M                  
Sbjct: 564 IEVFEKMPKYNCMPNVIIYSTLINGLSDQECVDDALKLLNDMPCKPDTICYSAALKGLCR 623

Query: 262 ----KEGG---------DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               ++ G         +C P+ VT++ +I   C KG ++ A  + + M    C PN   
Sbjct: 624 AERWEDAGELILEMIRKNCLPDEVTFSILINNLCHKGFLESATEVSELMLKYECMPNVFI 683

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S+LI GF  +   ++A QL+  +          CYS+ +  L R KR ++A +L ++M 
Sbjct: 684 YSSLINGFAEQYRAEDALQLLRNMPCEPDTI---CYSAALKGLCRAKRWEDARELIAEMF 740

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
                 D    S++I  LC  G V     ++E +   G   S +  IHS L+ G   +  
Sbjct: 741 RKQCPLDEATFSMLIGSLCQNGLVDMATEVFEQMSVYG--CSPNRKIHSSLVNGYSEQRR 798

Query: 429 SVEAAKLARFM 439
             E  KL   M
Sbjct: 799 VDEGLKLLSSM 809



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 156/342 (45%), Gaps = 49/342 (14%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           ++I  L E  R+  EA+ +  +MP    +PD   YN V++  C  G    A  L+ GM  
Sbjct: 278 EIISCLAELGRV-EEALHLFDQMP---CKPDIFSYNTVMKGLCRDGRWEDAGTLIAGMVR 333

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
            D  PD +T+ ++I   C+ G ++ A  + + M ++GC  +   YSAL++ +   G ++ 
Sbjct: 334 KDCPPDEVTFNTVISYLCHRGLVDCAMEVVEQMPKYGCKPDNFTYSALVNALSERGCVDD 393

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSV----------------------------------- 277
           ALELL  +  +     PN V Y SV                                   
Sbjct: 394 ALELLRTIPWK-----PNTVCYRSVLKGLCRADRWDDVGKLVAEMIRNQLNLDEVTFGLI 448

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I   C KG++     +L  M   GC+P+ +  ++LI GF   G++D+A +L   +    +
Sbjct: 449 IDCLCQKGLVDYGAEVLREMTKFGCSPDIIIYNSLINGFSENGSVDDALELFKNMSCKRN 508

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
           V +   Y+ ++  L R ++ ++A KL ++M+     P+ +  S +I  LC  G V     
Sbjct: 509 VVT---YNYMLKGLCRAEQWEDAGKLVAEMVKDECLPNEVTFSTLISYLCQKGFVECAIE 565

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           ++E + K   + +V   I+S L+ GL  +    +A KL   M
Sbjct: 566 VFEKMPKYNCMPNV--IIYSTLINGLSDQECVDDALKLLNDM 605



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 123/260 (47%), Gaps = 9/260 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V E  K+E     V    +I  LC+K      A+ V  KMP+++  P+ IIY+ +I    
Sbjct: 532 VAEMVKDECLPNEVTFSTLISYLCQKG-FVECAIEVFEKMPKYNCMPNVIIYSTLINGL- 589

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
              D    D+ +K +  +   PD I Y + +KG C A R EDA  L   M R  C  + V
Sbjct: 590 --SDQECVDDALKLLNDMPCKPDTICYSAALKGLCRAERWEDAGELILEMIRKNCLPDEV 647

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            +S L++ +C  G +E A E+   M K   +C PNV  Y+S+I  F  +   ++AL +L 
Sbjct: 648 TFSILINNLCHKGFLESATEVSELMLKY--ECMPNVFIYSSLINGFAEQYRAEDALQLLR 705

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M    C P+ +  S  +KG C     ++A +LI ++           +S L+  L +  
Sbjct: 706 NMP---CEPDTICYSAALKGLCRAKRWEDARELIAEMFRKQCPLDEATFSMLIGSLCQNG 762

Query: 356 RLKEAEKLFSKMLASGVKPD 375
            +  A ++F +M   G  P+
Sbjct: 763 LVDMATEVFEQMSVYGCSPN 782



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 145/321 (45%), Gaps = 12/321 (3%)

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           VE+ ++     +V    +I  LC   RL ++A  VL    E     D +  N ++  +C 
Sbjct: 91  VESMRDPERPAAVPCTLLIKKLCAAGRL-DDAERVL-GASERAGTADAVTRNTLVAGYCR 148

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
            G  +A  E M     +    D++TY +++ G+C  GRL DA  L   M     A N   
Sbjct: 149 AGGRLADAERMLASLALSGSADVVTYNTLVAGYCREGRLNDARRLVADMPF---APNSYT 205

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
            S LL G+C     + A ELL EM + G  C PN +T+  +I   C  G+   A+G+LD+
Sbjct: 206 NSTLLKGLCSNKEWDDAEELLSEMIRSG--CPPNDLTFGMIIHSLCQNGLADRAMGVLDQ 263

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M    C    +  + +I      G ++EA  L D++     + S   Y++++  L R  R
Sbjct: 264 MSKCRCTRGVIVYNEIISCLAELGRVEEALHLFDQMPCKPDIFS---YNTVMKGLCRDGR 320

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
            ++A  L + M+     PD +  + +I  LC  G V     + E + K G     D+  +
Sbjct: 321 WEDAGTLIAGMVRKDCPPDEVTFNTVISYLCHRGLVDCAMEVVEQMPKYG--CKPDNFTY 378

Query: 417 SVLLLGLCRKNHSVEAAKLAR 437
           S L+  L  +    +A +L R
Sbjct: 379 SALVNALSERGCVDDALELLR 399



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 8/254 (3%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I+V E   +  C+ +V +   + N        ++A+ +L  MP    +PDTI Y+  ++ 
Sbjct: 564 IEVFEKMPKYNCMPNVIIYSTLINGLSDQECVDDALKLLNDMP---CKPDTICYSAALKG 620

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C       A EL+  M   +  PD +T+  +I   C+ G LE A  + ++M ++ C  N
Sbjct: 621 LCRAERWEDAGELILEMIRKNCLPDEVTFSILINNLCHKGFLESATEVSELMLKYECMPN 680

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  YS+L++G       E AL+LL  M      C P+ + Y++ ++  C     ++A  +
Sbjct: 681 VFIYSSLINGFAEQYRAEDALQLLRNMP-----CEPDTICYSAALKGLCRAKRWEDAREL 735

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           +  M    C  +  T S LI   C  G +D A ++ +++   G   +   +SSLV     
Sbjct: 736 IAEMFRKQCPLDEATFSMLIGSLCQNGLVDMATEVFEQMSVYGCSPNRKIHSSLVNGYSE 795

Query: 354 TKRLKEAEKLFSKM 367
            +R+ E  KL S M
Sbjct: 796 QRRVDEGLKLLSSM 809


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 187/404 (46%), Gaps = 12/404 (2%)

Query: 42  NPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRAC 101
           NP   E+ L  +   L+   V  VL        ++ + FF WA  Q  YRH + +Y    
Sbjct: 148 NPK-FEENLRHLLRSLNPRLVCAVLRS--QDDERIALDFFYWADRQWRYRHDAIVYYTML 204

Query: 102 EM---SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           ++   +R+ Q    I+ ++      G   S +    +     +A +   A+ +L  M + 
Sbjct: 205 DILSKTRLCQGARRILRLM---TRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKA 261

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            + PD  I N  I +  +   +  A   ++ M +  + PDI++Y  +IKG+C+  R++DA
Sbjct: 262 GVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDA 321

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L   M   GC  + V+Y  ++  +C+   +E    L+  M  +  +  P+ VTY ++I
Sbjct: 322 LELIAEMPFKGCPPDKVSYYTVMAFLCKDRKVEEVKRLMENM-VQNSNLIPDQVTYNTLI 380

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                 G   +AL  L   E  G   ++V  S ++  FC   N+D+A  L+  + + G  
Sbjct: 381 YALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCN 440

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y++++    R  ++ EA+K+  +M   G KP+ +  +V++  LC  G+ LE   +
Sbjct: 441 PDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREM 500

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               E+  +  + ++  +S ++ GL R+    EA  L R M++K
Sbjct: 501 INVSEEHWW--TPNAITYSAVMHGLRREGKLSEACDLTREMIEK 542



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 150/327 (45%), Gaps = 43/327 (13%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           A++A+  LR+  E     D + Y+ V+  FC+  ++  A  L+  M      PD++TY +
Sbjct: 389 ADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTA 448

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I GFC  G++++A  + + M +HGC  N V Y+ LL+G+C  G    A E++   E+  
Sbjct: 449 IIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHW 508

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM--------------------------- 297
              +PN +TY++V+     +G + EA  +   M                           
Sbjct: 509 W--TPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVG 566

Query: 298 ------EAL--GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
                 E L  GCA N V  +++I GFC  G+LD A  +++ +           Y++L  
Sbjct: 567 AKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFD 626

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED-IEKIGFL 408
            L +  RL EA +L  KML  G+ P  +    +I   C  G+V +   L E  I +  F 
Sbjct: 627 ALGKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMMKLLEKMIARQPFK 686

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +     +++ ++  LC   +  EA KL
Sbjct: 687 T-----VYNQVIEKLCYFGNREEAEKL 708



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 151/332 (45%), Gaps = 45/332 (13%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+   I +  S++ID+      +GC   V     I +  C   ++ +EA  +L++M +  
Sbjct: 419 CKNKNIDKAKSLVIDMYS----KGCNPDVVTYTAIIDGFCRVGKI-DEAKKMLQQMYKHG 473

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            +P+T+ Y  ++   C  G  + A E++         P+ ITY +++ G    G+L +AC
Sbjct: 474 CKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEAC 533

Query: 220 GLFKVM----------------------------KRH-------GCAANLVAYSALLDGI 244
            L + M                            K++       GCA N+V +++++ G 
Sbjct: 534 DLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGF 593

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C++G ++ AL +L +M        P+ +TYT++      K  + EA  ++ +M   G  P
Sbjct: 594 CQIGDLDAALSMLEDMYLSNK--HPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDP 651

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
             VT   +I  FC  G +D+  +L++K++A     +   Y+ ++ +L      +EAEKL 
Sbjct: 652 TPVTYRAVIHRFCQWGRVDDMMKLLEKMIARQPFKT--VYNQVIEKLCYFGNREEAEKLL 709

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
            K+L +  K D   C ++I    + G  L  +
Sbjct: 710 GKVLRTASKLDAKTCHILIESYLIDGNALSAY 741



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 4/213 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           + + + +VI  FC+ GD+ AA  +++ M L + +PD ITY ++        RL++A  L 
Sbjct: 582 NVVNFTSVIYGFCQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELI 641

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G     V Y A++   C+ G ++  ++LL +M        P    Y  VI+  C
Sbjct: 642 VKMLGKGIDPTPVTYRAVIHRFCQWGRVDDMMKLLEKMIAR----QPFKTVYNQVIEKLC 697

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G  +EA  +L ++       +  T   LI+ + ++GN   AY++  ++     +    
Sbjct: 698 YFGNREEAEKLLGKVLRTASKLDAKTCHILIESYLIDGNALSAYKVACQMFRRNLIPDLK 757

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
               +  +LV      EA+ L  + +  G++ +
Sbjct: 758 LCEKVTKKLVLDGMPAEADDLMLRFVERGIQTE 790


>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 162/330 (49%), Gaps = 5/330 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  L EK  ++ EA      + + D+  + I+YN +I  + + G++  A    K +   
Sbjct: 478 IISGLFEKGAIS-EAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEK 536

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P I+T+ S+I GFC  G+L +A  L   +K HG     V Y+ L++G C  G M   
Sbjct: 537 GISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSM 596

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++L EME +     P  +TYT V++  C +G + E++ +L  M A G  P+++T +T+I
Sbjct: 597 FDMLHEMEAKA--IKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVI 654

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           + FC   +L +A+QL ++++      S   Y+ L+  L     LK+A++L   +    ++
Sbjct: 655 QSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIR 714

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
              +A + +I+  C  G V      +  + + GF  S+    +S ++  LC++N   +A 
Sbjct: 715 LTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRD--YSAVINRLCKRNLITDAK 772

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
                ML   I         ++    +SGD
Sbjct: 773 FFFCMMLTHGIPPDQDICLVMLNAFHRSGD 802



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 180/364 (49%), Gaps = 18/364 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+M  I+++      + E    +G  +S+    V+ + LC+  R+ +EA+ +L +M    
Sbjct: 386 CQMGNIEES----FKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRI-DEAVILLHEMEVIG 440

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L+PD + Y+        +G +  A EL + M    +YP+     ++I G    G + +A 
Sbjct: 441 LKPDLLTYS--------RGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQ 492

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
             F  + +   A  ++ Y+ ++DG  +LG++  A+    ++ ++G   SP +VT+ S+I 
Sbjct: 493 MYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKG--ISPTIVTFNSLIY 550

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            FC KG + EA+ +LD ++  G  P  VT +TL+ G+C EG++   + ++ ++ A     
Sbjct: 551 GFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKP 610

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+ +V  L +  RL E+ +L   M A G+ PD +  + +I+  C    + + F L+
Sbjct: 611 TQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLH 670

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459
             + +     S  +  ++VL+ GLC   +  +A +L   +  + I L       I++   
Sbjct: 671 NQMLQHSLQPSPVT--YNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHC 728

Query: 460 KSGD 463
             GD
Sbjct: 729 AKGD 732



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 145/298 (48%), Gaps = 7/298 (2%)

Query: 115 DVVEAYK---EEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           + V +YK   E+G   + V    +I+  C+K +LA EA+ +L  +    L P ++ Y  +
Sbjct: 525 EAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLA-EAVKLLDTIKVHGLVPTSVTYTTL 583

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +  +CE+GDM +  +++  M    + P  ITY  ++KG C  GRL ++  L K M   G 
Sbjct: 584 MNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGL 643

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             + + Y+ ++   C+   +++A +L  +M +     SP  VTY  +I   C  G +K+A
Sbjct: 644 FPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSP--VTYNVLINGLCVYGNLKDA 701

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             +L  ++       +V  +T+IK  C +G++  A     ++V  G   S   YS+++  
Sbjct: 702 DRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINR 761

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
           L +   + +A+  F  ML  G+ PD   C VM+      G     F ++  + K G L
Sbjct: 762 LCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLL 819



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 141/294 (47%), Gaps = 42/294 (14%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNV------------------------------ 170
           +A + ++A++VL KM   +L+     YN++                              
Sbjct: 180 RAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNP 239

Query: 171 --IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
             I   C +  +  A   ++  G  +  P ++++ +++ GFC  G ++ A   F +M ++
Sbjct: 240 ILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKY 299

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   ++ +Y+ LL G+C  GSME ALE   +ME  G    P++VTY  +   F   G++ 
Sbjct: 300 GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHG--VEPDIVTYNILANGFRILGLIS 357

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            A  ++ RM   G  P+ VT + LI G C  GN++E+++L +K+++ G   S   Y+ L+
Sbjct: 358 GAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLL 417

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
             L ++ R+ EA  L  +M   G+KPD L  S         G V E   LYE++
Sbjct: 418 SSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS--------RGAVEEAIELYEEM 463



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 148/324 (45%), Gaps = 20/324 (6%)

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           L + A  V+++M    L PD + Y  +I   C+ G++  + +L + M    L   I+TY 
Sbjct: 355 LISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYT 414

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            ++   C +GR+++A  L   M+  G   +L+ YS         G++E A+EL  EM   
Sbjct: 415 VLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSR--------GAVEEAIELYEEM--- 463

Query: 264 GGDCS----PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
              CS    PN    +++I     KG + EA    D +     A   +  + +I G+   
Sbjct: 464 ---CSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKL 520

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           GN+ EA +   +++  G   +   ++SL+    +  +L EA KL   +   G+ P  +  
Sbjct: 521 GNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTY 580

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + ++   C  G +   F +  ++E      +     ++V++ GLC++    E+ +L ++M
Sbjct: 581 TTLMNGYCEEGDMHSMFDMLHEMEAKAIKPT--QITYTVVVKGLCKEGRLHESVQLLKYM 638

Query: 440 LKKRIWLQGPYVDKIVEHLKKSGD 463
             + ++      + +++   K+ D
Sbjct: 639 YARGLFPDQITYNTVIQSFCKAHD 662


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 164/337 (48%), Gaps = 5/337 (1%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           V+     VI  LC + R+  E   V+  M    L+P+ I Y  ++  FC+ G++  A  +
Sbjct: 233 VAASYNAVILALCREFRM-QEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAI 291

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           +  M +    P++ T+ +++ G  N GR+ DA  ++K M   G A + V+Y+ L+ G+C 
Sbjct: 292 LARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCS 351

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
           +G ++ A  +L +ME+ G  C PN  TY+++I  F   G +  A+ I + M   GC PN 
Sbjct: 352 VGDLKGASSVLNDMEQHG--CFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNV 409

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           V  + ++  FC +   ++A  LIDK++      +   +++L+  L   +R+  A  +F +
Sbjct: 410 VVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHE 469

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M   G  P+G   + ++  L   G   +   +  +++  G   S+ +  ++ ++ GLC+ 
Sbjct: 470 MRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVT--YNTVVSGLCQM 527

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
               EA      M+ + I         I+    K G+
Sbjct: 528 RMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGE 564



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 152/302 (50%), Gaps = 9/302 (2%)

Query: 83  WAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142
           WA    SY   + +    C +  +K   S++ D+    ++ GC  + +    + +   KA
Sbjct: 335 WAPSTVSY---NVLIRGLCSVGDLKGASSVLNDM----EQHGCFPNARTYSTLIDGFSKA 387

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
              + A+ +   M     +P+ ++Y N++ +FC+K     A+ L+  M + +  P+ +T+
Sbjct: 388 GDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTF 447

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I+  CN  R+  A G+F  M+RHGC  N   Y+ LL G+ R G+   AL+++ EM+ 
Sbjct: 448 NTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQN 507

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G + S  +VTY +V+   C   M +EA+  + RM   G  P+  T + +I  +C EG +
Sbjct: 508 HGIELS--LVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEV 565

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
             A  ++  +       +   Y+ L+ EL    +L++A     KML  G+ P+ +  +V+
Sbjct: 566 RMAAWILGAMNVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNVL 625

Query: 383 IR 384
           +R
Sbjct: 626 VR 627



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 10/325 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC   R+ +EA  VL   P     P    YN VI   C +  M     ++  M   
Sbjct: 210 IVSALCTLGRV-DEATEVLSAAP-----PVAASYNAVILALCREFRMQEVFAVVGDMVGR 263

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P++ITY +++  FC AG L  AC +   M   GC  N+  ++AL+ G+   G +  A
Sbjct: 264 GLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDGRVHDA 323

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L++   M  EG   +P+ V+Y  +I+  C  G +K A  +L+ ME  GC PN  T STLI
Sbjct: 324 LDMWKCMVAEGW--APSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLI 381

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GF   G+LD A  + + +   G   +   Y+++V    +     +AE L  KML     
Sbjct: 382 DGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCP 441

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  + +IR LC   +V     ++ ++ + G     +   ++ LL GL R+ +  +A 
Sbjct: 442 PNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHG--CPPNGRTYNELLHGLFREGNCGDAL 499

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHL 458
           ++   M    I L     + +V  L
Sbjct: 500 QMVIEMQNHGIELSLVTYNTVVSGL 524



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 2/231 (0%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P T+ YN +IR  C  GD+  A  ++  M     +P+  TY ++I GF  AG L+ A  +
Sbjct: 337 PSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISI 396

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           +  M R GC  N+V Y+ ++   C+     +A  L+ +M  E  +C PN VT+ ++I+  
Sbjct: 397 WNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVE--NCPPNTVTFNTLIRSL 454

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C    +  ALG+   M   GC PN  T + L+ G   EGN  +A Q++ ++   G   S 
Sbjct: 455 CNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSL 514

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
             Y+++V  L + +  +EA     +M+  G++PD    + +I   C  G+V
Sbjct: 515 VTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEV 565



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 11/249 (4%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++P+   YN ++R  C+   + AA +++  M      PD +TY +++   C  GR+++A 
Sbjct: 165 VQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGCPPDDVTYGTIVSALCTLGRVDEAT 224

Query: 220 GLFKVMKRHGCAANLVA--YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
            +         AA  VA  Y+A++  +CR   M+    ++G+M   G    PNV+TYT++
Sbjct: 225 EVLS-------AAPPVAASYNAVILALCREFRMQEVFAVVGDMVGRG--LQPNVITYTTI 275

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +  FC  G ++ A  IL RM   GC PN  T + L+ G   +G + +A  +   +VA G 
Sbjct: 276 VNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGW 335

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
             S   Y+ L+  L     LK A  + + M   G  P+    S +I      G +     
Sbjct: 336 APSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAIS 395

Query: 398 LYEDIEKIG 406
           ++ D+ + G
Sbjct: 396 IWNDMTRSG 404



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 124/261 (47%), Gaps = 11/261 (4%)

Query: 166 IYNNVIRLFCEKGDMIAADELMKG-MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           +YN++I     + +M+ A  L+ G M    + P++ TY  +++  C   R+  A  +   
Sbjct: 136 LYNHLIDALLRE-NMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDE 194

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   GC  + V Y  ++  +C LG ++ A E+L           P   +Y +VI   C +
Sbjct: 195 MATKGCPPDDVTYGTIVSALCTLGRVDEATEVLSA-------APPVAASYNAVILALCRE 247

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             M+E   ++  M   G  PN +T +T++  FC  G L  A  ++ ++V  G   +   +
Sbjct: 248 FRMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATF 307

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++LV  L    R+ +A  ++  M+A G  P  ++ +V+IR LC  G +     +  D+E+
Sbjct: 308 TALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQ 367

Query: 405 IGFLSSVDSDIHSVLLLGLCR 425
            G     ++  +S L+ G  +
Sbjct: 368 HGCFP--NARTYSTLIDGFSK 386



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    V+  LC+  R+  EAM+ + +M    ++PD   +  +I  +C++G++  A  ++ 
Sbjct: 515 VTYNTVVSGLCQM-RMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAAWILG 573

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
            M +++   +I+ Y  ++   CN  +LEDA      M   G   N V ++ L+ G+ R
Sbjct: 574 AMNVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNVLVRGVFR 631


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 207/428 (48%), Gaps = 18/428 (4%)

Query: 39  LQKNPNN-IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMY 97
           L KNPN+ IEK L     K+    V+EVL R   +   + + FF WA  Q  + +++  Y
Sbjct: 92  LSKNPNSSIEKLLLGASFKVSPALVLEVLKR-LSNAGALALSFFKWAEKQKGFMYNTESY 150

Query: 98  NRACE-MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           N   + + +IKQ  ++I ++V   K +G V++ +   +I     ++    EAM    KM 
Sbjct: 151 NALIDSLGKIKQF-NMIWNLVNDMKRKG-VLTKETFALISRRYARSGKVKEAMNTFEKME 208

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           +F L+ ++  +N ++    +   +++A  +   M +    PDI +Y  +++G+     L 
Sbjct: 209 KFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLL 268

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
               +++ MK  G   ++V Y  L++  C++   + A+EL  EME +  +C P+   + +
Sbjct: 269 KLDEVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESK--NCQPSPHIFCT 326

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I        + EAL    R +A G AP   T + ++  +C    +D+AY+++D++   G
Sbjct: 327 LINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSG 386

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA-SGVKPDGLACSVMIRELCLGGQVLEG 395
              +   Y  ++  L++ ++  EA  +F KM +    +P      +++R  C   +V   
Sbjct: 387 VGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESA 446

Query: 396 FCLYEDIEKIGFLSSVDSDIH--SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
             +++ ++  G    V   +H  S+L+  LC +N    A K  + ML   + ++ P    
Sbjct: 447 IKVWDRMKAKG----VHPGMHMFSILINSLCHENKLDIACKYFQEMLD--VGIRPPAA-- 498

Query: 454 IVEHLKKS 461
           +  HLK++
Sbjct: 499 LFSHLKQA 506



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 1/242 (0%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +V    K+EG    V    ++ N   K R  ++A+ + R+M   + +P   I+  +I   
Sbjct: 272 EVYREMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLINGL 331

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
                +  A E  +        P+  TY +++  +C + R++DA  +   M++ G   N 
Sbjct: 332 GSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNS 391

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             Y  +L  + +      A  +  +M  E  +C P V TY  ++++FC    ++ A+ + 
Sbjct: 392 RTYDIILHHLIKAEKTTEAFSVFEKMSSEE-ECEPTVSTYDIIVRMFCNMDKVESAIKVW 450

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           DRM+A G  P     S LI   C E  LD A +   +++  G       +S L   L+  
Sbjct: 451 DRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAALFSHLKQALIED 510

Query: 355 KR 356
            R
Sbjct: 511 GR 512



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 1/148 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP-EFDLRPDTIIYNNVIRLF 174
           +V+  ++ G   + +   +I +   KA    EA  V  KM  E +  P    Y+ ++R+F
Sbjct: 378 MVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMF 437

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C    + +A ++   M    ++P +  +  +I   C+  +L+ AC  F+ M   G     
Sbjct: 438 CNMDKVESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPA 497

Query: 235 VAYSALLDGICRLGSMERALELLGEMEK 262
             +S L   +   G  +  + L  +++K
Sbjct: 498 ALFSHLKQALIEDGRKDTVVLLAQKIDK 525


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 204/434 (47%), Gaps = 19/434 (4%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMS 104
           N+E  L  +K  L    ++EVL R F    +   RFF WAA +  + H S  YN    + 
Sbjct: 147 NMEAVLDEMKLDLSHDLIVEVLER-FRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSIL 205

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR--P 162
              +    ++ V+E    +G +++++   +       A+   +A+ +   M ++  +   
Sbjct: 206 AKTRQFETMVSVLEEMGTKG-LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGV 264

Query: 163 DTI--IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +TI  + +++ R    K   +  D+L +        P+++TY  ++ G+C    L +A  
Sbjct: 265 ETINCLLDSLGRAKLGKEAQVLFDKLKE-----RFTPNMMTYTVLLNGWCRVRNLIEAAR 319

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           ++  M   G   ++VA++ +L+G+ R      A++L   M K  G C PNV +YT +I+ 
Sbjct: 320 IWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVM-KSKGPC-PNVRSYTIMIRD 377

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +  M+ A+   D M   G  P+    + LI GF  +  LD  Y+L+ ++   G    
Sbjct: 378 FCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPD 437

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  Y++L+  +   K  + A ++++KM+ + ++P     +++++   +      G  ++E
Sbjct: 438 GKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWE 497

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD--KIVEHL 458
           ++ K G     D + ++VL+ GL  +  S EA +    ML K   ++ P +D  K     
Sbjct: 498 EMIKKGICP--DDNSYTVLIRGLIGEGKSREACRYLEEMLDK--GMKTPLIDYNKFAADF 553

Query: 459 KKSGDEELITNLPK 472
            + G  E+   L +
Sbjct: 554 HRGGQPEIFEELAQ 567


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 180/389 (46%), Gaps = 24/389 (6%)

Query: 53  VKAKLDSTCVI---EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFM-YNRACEMSRIKQ 108
           +K  L   C I    +L +CF S S++      +  L     H + + +N       ++ 
Sbjct: 5   IKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVED 64

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
             S  +D+     +   V    +M     LC + R+  EA+ +L +M E  L+P+ I Y 
Sbjct: 65  RVSEALDLFHQMCKPNVVTFTTLMN---GLCREGRVV-EAVALLDRMVEDGLQPNQITYG 120

Query: 169 NVIRLFCEKGDMIAADELMKGMG-LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
            ++   C+ GD ++A  L++ M  L  + PD++ Y ++I G    GR  DA  LF  M+ 
Sbjct: 121 TIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQD 180

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   ++V YS +++G C  G    A  LL EM       SP+VVT++ +I     +G +
Sbjct: 181 KGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVR--KISPDVVTFSGLINALVKEGDL 238

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL----------IDKVVAGGS 337
             A  +L  M + G  PN VT +TL+ G C  G L +A ++          ID   A   
Sbjct: 239 NSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNG 298

Query: 338 VSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
           V      Y+ L+  L+   +  EAE+L+ +M   G+ PD +  S MI  LC   ++ E  
Sbjct: 299 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEAT 358

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            +++ +    F  ++ +   + L+ G C+
Sbjct: 359 QMFDSMGSKSFSPNIVT--FNTLITGYCK 385



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 150/306 (49%), Gaps = 14/306 (4%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+    K+ +    P  + +N ++   C +  +  A +L   M      P+++T+ +++ 
Sbjct: 34  ALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMN 89

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  GR+ +A  L   M   G   N + Y  ++DG+C++G    AL LL +ME E    
Sbjct: 90  GLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME-ELSHI 148

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+VV Y+++I      G   +A  +   M+  G  P+ VT S +I GFC  G   EA +
Sbjct: 149 KPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQR 208

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ +++          +S L+  LV+   L  A+ L  +M++SGV P+ + C+ ++  LC
Sbjct: 209 LLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLC 268

Query: 388 LGGQVLEGFCLYE-------DIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARF 438
             G++ +   +++       DI+     + V+ D+  +++L+ GL  +   +EA +L   
Sbjct: 269 DSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEE 328

Query: 439 MLKKRI 444
           M  + I
Sbjct: 329 MPHRGI 334



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 138/275 (50%), Gaps = 14/275 (5%)

Query: 148 AMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           A+ +LRKM E   ++PD +IY+ +I    + G    A  L   M    ++PDI+TY  MI
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC++G+  +A  L + M     + ++V +S L++ + + G +  A +LL EM   G  
Sbjct: 195 NGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSG-- 252

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----------GCAPNRVTISTLIKG 315
             PNVVT  +++   C  G +K+AL +   M+             G  P+  T + LI G
Sbjct: 253 VCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISG 312

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
              EG   EA +L +++   G V     YSS++  L +  RL EA ++F  M +    P+
Sbjct: 313 LINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPN 372

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
            +  + +I   C  G V +G  L+ ++ + G +++
Sbjct: 373 IVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVAN 407



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 146/281 (51%), Gaps = 14/281 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   + + EA  +L++M    + PD + ++ +I    ++GD+ +A +L++ M   
Sbjct: 193 MINGFCSSGKWS-EAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISS 251

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----------HGCAANLVAYSALLD 242
            + P+++T  +++ G C++G+L+DA  +FK M++           +G   ++  Y+ L+ 
Sbjct: 252 GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILIS 311

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+   G    A EL  EM   G    P+ VTY+S+I   C +  + EA  + D M +   
Sbjct: 312 GLINEGKFLEAEELYEEMPHRG--IVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSF 369

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
           +PN VT +TLI G+C  G +D+  +L  ++   G V++   Y +L+    +   +  +  
Sbjct: 370 SPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLD 429

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           +F +M++SGV PD +    M+  L    ++ +   + E+++
Sbjct: 430 IFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEELQ 470



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 117/236 (49%), Gaps = 13/236 (5%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--GLIDL-------- 195
           N A  +L++M    + P+ +  N ++   C+ G +  A E+ K M   ++D+        
Sbjct: 239 NSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNG 298

Query: 196 -YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
             PD+ TY  +I G  N G+  +A  L++ M   G   + V YS++++G+C+   ++ A 
Sbjct: 299 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEAT 358

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           ++   M  +    SPN+VT+ ++I  +C  GM+ + L +   M   G   N +T  TLI+
Sbjct: 359 QMFDSMGSKS--FSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIR 416

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           GF   GN++ +  +  ++++ G         +++  L   + LK+A  +  ++  S
Sbjct: 417 GFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEELQMS 472



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 103/200 (51%), Gaps = 6/200 (3%)

Query: 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEF 158
           A EM +  Q   + ID   A+   G    V+   ++ + L  + +   EA  +  +MP  
Sbjct: 276 ALEMFKAMQKSMMDIDATHAFN--GVEPDVQTYNILISGLINEGKFL-EAEELYEEMPHR 332

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            + PDT+ Y+++I   C++  +  A ++   MG     P+I+T+ ++I G+C AG ++D 
Sbjct: 333 GIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDG 392

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             LF  M R G  AN + Y  L+ G  ++G++  +L++  EM   G    P+ +T  +++
Sbjct: 393 LELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSG--VYPDTITIRNML 450

Query: 279 QIFCGKGMMKEALGILDRME 298
                K  +K+AL +L+ ++
Sbjct: 451 TGLWSKEELKKALAMLEELQ 470



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 5/184 (2%)

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           K G     ++ ++  +I+ FC    +  AL    ++  LG  P  VT +TL+ G CVE  
Sbjct: 6   KHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDR 65

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           + EA  L  ++     V+    +++L+  L R  R+ EA  L  +M+  G++P+ +    
Sbjct: 66  VSEALDLFHQMCKPNVVT----FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 121

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           ++  +C  G  +    L   +E++  +   D  I+S ++ GL +     +A  L   M  
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKP-DVVIYSAIIDGLWKDGRHTDAQNLFIEMQD 180

Query: 442 KRIW 445
           K I+
Sbjct: 181 KGIF 184


>gi|297740791|emb|CBI30973.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 152/316 (48%), Gaps = 5/316 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V   KV+  LC+  R+  E + VL ++       D + YN +I+ FC  G       ++K
Sbjct: 183 VTATKVVGILCKAGRVT-EGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLK 241

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +    P++ TY  +  G+C++G L+ A  LF  MK  G   N + Y  L+ G+C  G
Sbjct: 242 DMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGG 301

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ME   ++L  ME+  G     +  Y S+I     K   +EAL  L +ME L   P  V 
Sbjct: 302 RMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKL--FPRAVD 359

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S  I GFC EG++ +A ++ D+++  G V S   Y  L+    +   ++EA +L ++M+
Sbjct: 360 RSLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMV 419

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G  P     + +I   C  G+V     L ED+   G L  + S  +S ++  LC K  
Sbjct: 420 DHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGS--YSPMVDALCNKGD 477

Query: 429 SVEAAKLARFMLKKRI 444
             +A +L   M++K I
Sbjct: 478 FQKAVRLFLQMVEKDI 493



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 155/331 (46%), Gaps = 31/331 (9%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +AR+  + + VL  + +F   P   I+N+++ +  ++   +A +   K M +  +  D  
Sbjct: 23  RARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVKEDIDLAREFYRKKMMMNGVSGDDY 82

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T+  ++KG C   R+ DA  L +VMK  G   N V Y+ ++  +C+ G + RA  L+ EM
Sbjct: 83  TFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNEM 142

Query: 261 EKEGGDCS------------------------------PNVVTYTSVIQIFCGKGMMKEA 290
             E  D +                              P+VVT T V+ I C  G + E 
Sbjct: 143 -VEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKAGRVTEG 201

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           + +L+R+E++G   + V  +TLIKGFC+ G     ++++  +   G + +   Y+ L   
Sbjct: 202 VEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKDMEIKGCLPNVDTYNILASG 261

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
              +  L  A  LF+ M   G+  + +    +IR LC GG++ +GF + E +E+    + 
Sbjct: 262 YCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELMEESRGGAG 321

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
                ++ ++ GL +KN   EA +    M K
Sbjct: 322 GRISPYNSIIYGLYKKNQFEEALEFLTKMEK 352



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 156/338 (46%), Gaps = 47/338 (13%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI---FNLCEKARLANEAMWVLRKMPE 157
           C+  R+ +     ++V+E  +  G VV V     +   F +  KA++ +    VL+ M  
Sbjct: 193 CKAGRVTEG----VEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHR---VLKDMEI 245

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
               P+   YN +   +C+ G + +A +L   M    +  + +TY ++I+G C+ GR+ED
Sbjct: 246 KGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMED 305

Query: 218 ACGLFKVMK--RHGCAANLVAYSALLDGICRLGSMERALELLGEMEK------------- 262
              + ++M+  R G    +  Y++++ G+ +    E ALE L +MEK             
Sbjct: 306 GFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLRIL 365

Query: 263 ----EG--GDCS------------PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
               EG  GD              P+V+ Y  +I  FC  G ++EA  +++ M   G  P
Sbjct: 366 GFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFP 425

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + LI  FC +G +  A +L++ +V  G +   G YS +V  L      ++A +LF
Sbjct: 426 TAPTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLF 485

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQV--LEGFCLYE 400
            +M+   + PD    + M+  LCL  +   LEG  L+ 
Sbjct: 486 LQMVEKDILPDYSTWNSML--LCLTQETVWLEGDNLFH 521



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 115/263 (43%), Gaps = 43/263 (16%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD-------------- 242
           PD   +V++++G   A  +     +  ++ + G   +L  ++++LD              
Sbjct: 9   PDESIFVTIVRGLGRARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVKEDIDLAREFY 68

Query: 243 ---------------------GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
                                G+C    +  A +LL  M+  G   +PN V Y ++I   
Sbjct: 69  RKKMMMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGK--TPNTVIYNTMIHAL 126

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G +  A  +++ M      P+ VT + LI  +C E NL +A  L++K  + G V   
Sbjct: 127 CKNGKVGRARSLMNEM----VEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDV 182

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
              + +V  L +  R+ E  ++  ++ + G   D +A + +I+  C+ G+   G  + +D
Sbjct: 183 VTATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVLKD 242

Query: 402 IEKIGFLSSVDSDIHSVLLLGLC 424
           +E  G L +VD+  +++L  G C
Sbjct: 243 MEIKGCLPNVDT--YNILASGYC 263


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 162/340 (47%), Gaps = 4/340 (1%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N S  I ++ +  ++ C  +V     I +   K R   EA  +  +M    + PD   YN
Sbjct: 181 NTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYN 240

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           ++I   C   +      L+  M    + PD++++ +++   C  G++ +A  +   M + 
Sbjct: 241 SLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR 300

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   N+V Y+AL+DG C L  M+ A+++   M  +G  C PNV++Y ++I  +C    + 
Sbjct: 301 GVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKG--CMPNVISYNTLINGYCKIQRID 358

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A+ +   M      P+ VT STLI G C    L +A  L  ++VA   + +   Y  L+
Sbjct: 359 KAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILL 418

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L + + L EA  L   +  S + PD    ++ I  +C  G++     L+ ++   G  
Sbjct: 419 DYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQ 478

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
             V +  +S+++ GLCR+    EA+KL R M +    L G
Sbjct: 479 PDVWT--YSIMINGLCRRGLLDEASKLFREMDENGCTLNG 516



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 62/344 (18%)

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           ++  + NLCE   +A     +L +M +  + PD + +N V+   C++G +  A +++  M
Sbjct: 242 LIHALCNLCEWKHVAT----LLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKM 297

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + P+++TY +++ G C    +++A  +F  M   GC  N+++Y+ L++G C++  +
Sbjct: 298 IQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRI 357

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           ++A+ L GEM ++  +  P+ VTY+++I   C    +++A+ +   M A    PN VT  
Sbjct: 358 DKAMYLFGEMCRQ--ELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYR 415

Query: 311 TL-----------------------------------IKGFCVEGNLDEAYQLIDKVVAG 335
            L                                   I G C  G L+ A  L   + + 
Sbjct: 416 ILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSK 475

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G       YS ++  L R   L EA KLF +M  +G   +G                   
Sbjct: 476 GLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNG------------------- 516

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            C+Y  I + GFL + ++     LL  +  +  S +A+ +  F+
Sbjct: 517 -CIYNTITR-GFLRNNETSRAIQLLQEMVARGFSADASTMTLFV 558



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 118/257 (45%), Gaps = 8/257 (3%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+ V   M      P+ I YN +I  +C+   +  A  L   M   +L PD +TY ++
Sbjct: 323 DEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTL 382

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G C+  RL+DA  LF  M       NLV Y  LLD +C+   +  A+ LL  +E  G 
Sbjct: 383 IHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIE--GS 440

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  P++      I   C  G ++ A  +   + + G  P+  T S +I G C  G LDEA
Sbjct: 441 NLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEA 500

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L  ++   G   +G  Y+++    +R      A +L  +M+A G   D    ++ ++ 
Sbjct: 501 SKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKM 560

Query: 386 LCLGG------QVLEGF 396
           L   G      Q+L  F
Sbjct: 561 LSDDGLDQSLKQILREF 577



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 115/240 (47%), Gaps = 3/240 (1%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC+ +V     + N   K +  ++AM++  +M   +L PDT+ Y+ +I   C    +  
Sbjct: 335 KGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQD 394

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L   M      P+++TY  ++   C    L +A  L K ++      ++   +  +D
Sbjct: 395 AIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAID 454

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+CR G +E A +L   +  +G    P+V TY+ +I   C +G++ EA  +   M+  GC
Sbjct: 455 GMCRAGELEAARDLFSNLSSKG--LQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGC 512

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
             N    +T+ +GF        A QL+ ++VA G  S+     +L V+++    L ++ K
Sbjct: 513 TLNGCIYNTITRGFLRNNETSRAIQLLQEMVARG-FSADASTMTLFVKMLSDDGLDQSLK 571



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   LA EAM +L+ +   +L PD  + N  I   C  G++ AA +L   +    L P
Sbjct: 421 LCKNRYLA-EAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQP 479

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ TY  MI G C  G L++A  LF+ M  +GC  N   Y+ +  G  R     RA++LL
Sbjct: 480 DVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLL 539

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
            EM   G   S +  T T  +++    G+ +    IL
Sbjct: 540 QEMVARG--FSADASTMTLFVKMLSDDGLDQSLKQIL 574


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 152/306 (49%), Gaps = 6/306 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PDT  +N ++    + GD+    +L   M    + P+++TY  ++KG C AGR+ DA  +
Sbjct: 135 PDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSV 194

Query: 222 FKVM--KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
              M         ++V  + ++DG+C+ G +++A++ + E  +    C+PN VTY  +  
Sbjct: 195 LDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAH 254

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI--DKVVAGGS 337
            FC  G +  A  ++ +ME     PN VT++T++ G C  G +  A +     + V   +
Sbjct: 255 AFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEA 314

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
             +   YS+LV   + T  +  A +LF +M+  G  PD +    MI  L   G++ + + 
Sbjct: 315 RGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWS 374

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457
           +   ++K GF   +D+  +++L+ G CR+    EA +L   M +  +       + ++  
Sbjct: 375 MATSMKKAGF--QLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSG 432

Query: 458 LKKSGD 463
           L K+GD
Sbjct: 433 LCKAGD 438



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 156/343 (45%), Gaps = 11/343 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKM--PEFDLRPDTIIYNNVIRLFCEKGDMIAA----DELM 187
           ++  LC+  R+  +A+ VL  M  PE D+ PD ++ NN++   C+ G +  A    +E M
Sbjct: 178 LVKGLCKAGRVG-DALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERM 236

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + +      P+ +TY  +   FC AG +  AC L   M++     N V  + ++ G+C +
Sbjct: 237 RSVH--GCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWV 294

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +  ALE   E      +   N VTY++++  F     +  A+ +   M   G +P+ +
Sbjct: 295 GRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAI 354

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
              T+I G    G LD+A+ +   +   G       Y+ L+    R KRL EA +L  +M
Sbjct: 355 MYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEM 414

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
             +G++PD    + ++  LC  G  L    L   +   G   SV +     L+ G C+  
Sbjct: 415 KEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVT--FGTLIHGYCKVG 472

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
              EA ++ R M +  I       + +++ L KS D  L   L
Sbjct: 473 QIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIEL 515



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 138/280 (49%), Gaps = 16/280 (5%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG--LIDLYPDIITYVSMIKGFCNA 212
           M +  +RP+ + Y  +++  C+ G +  A  ++ GM     D+ PD++   +++ G C  
Sbjct: 163 MRDASVRPNVVTYGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKT 222

Query: 213 GRLEDACGLFKVMKR--HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           GRL+ A    +   R  HGCA N V Y+ L    CR G++  A EL+ +MEKE    +PN
Sbjct: 223 GRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKE--RVTPN 280

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRM-----EALGCAPNRVTISTLIKGFCVEGNLDEA 325
            VT  +++   C  G +  AL           EA G   N VT STL+  F    N+  A
Sbjct: 281 AVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARG---NAVTYSTLVGAFLHTNNVGVA 337

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +L  ++V  G+      Y +++  L +  RL +A  + + M  +G + D  A +++I  
Sbjct: 338 MELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGG 397

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            C   ++ E + L  ++++ G    V +  ++ LL GLC+
Sbjct: 398 FCRRKRLNEAYELLGEMKEAGLQPDVYT--YNTLLSGLCK 435



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 122/255 (47%), Gaps = 7/255 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRK---MPEFDLRPDTIIYNNVIR 172
           V +  KE     +V +  ++  LC   R+     +   K    PE   R + + Y+ ++ 
Sbjct: 269 VAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPE--ARGNAVTYSTLVG 326

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            F    ++  A EL   M      PD I Y +MI G   AGRL+DA  +   MK+ G   
Sbjct: 327 AFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQL 386

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +  AY+ L+ G CR   +  A ELLGEM++ G    P+V TY +++   C  G       
Sbjct: 387 DAKAYNILIGGFCRRKRLNEAYELLGEMKEAG--LQPDVYTYNTLLSGLCKAGDFLAVDE 444

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L +M   GC P+ VT  TLI G+C  G +DEA ++   +   G   +   Y++L+  L 
Sbjct: 445 LLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLC 504

Query: 353 RTKRLKEAEKLFSKM 367
           +++    A +LF +M
Sbjct: 505 KSRDTSLAIELFDEM 519



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 107/204 (52%), Gaps = 4/204 (1%)

Query: 121 KEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           K+ G  +  K   ++    C + RL NEA  +L +M E  L+PD   YN ++   C+ GD
Sbjct: 380 KKAGFQLDAKAYNILIGGFCRRKRL-NEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGD 438

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
            +A DEL+  M      P ++T+ ++I G+C  G++++A  +F+ M   G   N V Y+ 
Sbjct: 439 FLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNT 498

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+D +C+      A+EL  EM ++      NV T+ ++++    K M ++A  ++D M  
Sbjct: 499 LIDFLCKSRDTSLAIELFDEMREK--HVPANVTTFNALLKGLRDKNMPEKAFELMDLMRE 556

Query: 300 LGCAPNRVTISTLIKGFCVEGNLD 323
             C P+ VTI  L++   V G  D
Sbjct: 557 GRCTPDYVTIDILMEWLPVIGETD 580



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 158/347 (45%), Gaps = 8/347 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD- 159
           C+  R+    S++ D +   + + C   V +  ++  LC+  RL     +V  +M     
Sbjct: 183 CKAGRVGDALSVL-DGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHG 241

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             P+T+ YN +   FC  G++  A EL+  M    + P+ +T  +++ G C  GR+  A 
Sbjct: 242 CAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAAL 301

Query: 220 GLFKVMKRHGCAA--NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
             F+  +     A  N V YS L+       ++  A+EL  EM  EG   SP+ + Y ++
Sbjct: 302 EFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGN--SPDAIMYFTM 359

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I      G + +A  +   M+  G   +    + LI GFC    L+EAY+L+ ++   G 
Sbjct: 360 ISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGL 419

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
                 Y++L+  L +       ++L  KM+  G +P  +    +I   C  GQ+ E   
Sbjct: 420 QPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALR 479

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           ++  +++ G     ++ I++ L+  LC+   +  A +L   M +K +
Sbjct: 480 IFRSMDESGI--QPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHV 524



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 3/203 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++    +I  L +  RL ++A  +   M +   + D   YN +I  FC +  +  A EL+
Sbjct: 353 AIMYFTMISGLTQAGRL-DDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELL 411

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M    L PD+ TY +++ G C AG       L   M   GC  ++V +  L+ G C++
Sbjct: 412 GEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKV 471

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ++ AL +   M++ G    PN V Y ++I   C       A+ + D M       N  
Sbjct: 472 GQIDEALRIFRSMDESG--IQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVT 529

Query: 308 TISTLIKGFCVEGNLDEAYQLID 330
           T + L+KG   +   ++A++L+D
Sbjct: 530 TFNALLKGLRDKNMPEKAFELMD 552



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 61/129 (47%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC  SV     + +   K    +EA+ + R M E  ++P+T+IYN +I   C+  D   A
Sbjct: 453 GCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLA 512

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            EL   M    +  ++ T+ +++KG  +    E A  L  +M+   C  + V    L++ 
Sbjct: 513 IELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILMEW 572

Query: 244 ICRLGSMER 252
           +  +G  +R
Sbjct: 573 LPVIGETDR 581


>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14820, mitochondrial; Flags: Precursor
 gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
 gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 204/434 (47%), Gaps = 19/434 (4%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMS 104
           N+E  L  +K  L    ++EVL R F    +   RFF WAA +  + H S  YN    + 
Sbjct: 146 NMEAVLDEMKLDLSHDLIVEVLER-FRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSIL 204

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR--P 162
              +    ++ V+E    +G +++++   +       A+   +A+ +   M ++  +   
Sbjct: 205 AKTRQFETMVSVLEEMGTKG-LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGV 263

Query: 163 DTI--IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +TI  + +++ R    K   +  D+L +        P+++TY  ++ G+C    L +A  
Sbjct: 264 ETINCLLDSLGRAKLGKEAQVLFDKLKE-----RFTPNMMTYTVLLNGWCRVRNLIEAAR 318

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           ++  M  HG   ++VA++ +L+G+ R      A++L   M K  G C PNV +YT +I+ 
Sbjct: 319 IWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVM-KSKGPC-PNVRSYTIMIRD 376

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +  M+ A+   D M   G  P+    + LI GF  +  LD  Y+L+ ++   G    
Sbjct: 377 FCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPD 436

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  Y++L+  +   K  +   ++++KM+ + ++P     +++++   +      G  +++
Sbjct: 437 GKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWD 496

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD--KIVEHL 458
           ++ K G     D + ++VL+ GL  +  S EA +    ML K   ++ P +D  K     
Sbjct: 497 EMIKKGICP--DDNSYTVLIRGLISEGKSREACRYLEEMLDK--GMKTPLIDYNKFAADF 552

Query: 459 KKSGDEELITNLPK 472
            + G  E+   L +
Sbjct: 553 HRGGQPEIFEELAQ 566


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 157/316 (49%), Gaps = 4/316 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ V ++M    + PD +  N ++   C+ G +  A ++   M +    PD+ +Y  M+
Sbjct: 311 EAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIML 370

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+   G L D   LF +M   G A ++  +S L+      G +++A+ +  EM   G  
Sbjct: 371 NGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHG-- 428

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+VVTYT+VI   C  G M +A+   ++M   G AP++     LI+GFC  G+L +A 
Sbjct: 429 VKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 488

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +LI +++  G       +SS++  L +  R+ +A+ +F   +  G  PD +  S+++   
Sbjct: 489 ELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGY 548

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           CL G++ +   +++ +   G   +V   ++  L+ G C+     E   L R ML+K I  
Sbjct: 549 CLVGKMEKALRVFDAMVSAGIEPNV--VVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 606

Query: 447 QGPYVDKIVEHLKKSG 462
                + I++ L  +G
Sbjct: 607 STILYNIIIDGLFVAG 622



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 148/290 (51%), Gaps = 4/290 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A  + ++M +  + PD + Y++V+   C+   M  A+  ++ M    + PD  TY ++
Sbjct: 240 NKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNL 299

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G+ + G+ ++A  +FK M+RH    ++V  + L+  +C+ G ++ A ++   M  +G 
Sbjct: 300 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQ 359

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  P+V +Y  ++  +  KG + +   + D M   G AP+  T S LIK +   G LD+A
Sbjct: 360 N--PDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKA 417

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             + +++   G       Y++++  L R  ++ +A + F++M+  GV PD  A   +I+ 
Sbjct: 418 MIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQG 477

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            C  G +L+   L  +I   G    +D    S ++  LC+    ++A  +
Sbjct: 478 FCTHGSLLKAKELILEIMNNGM--RLDIVFFSSIINNLCKLGRIMDAQNI 525



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 143/322 (44%), Gaps = 11/322 (3%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--GLIDL 195
            CE  R       +L + PE    PD   Y+ +++  C++G    AD+L++ M  G    
Sbjct: 160 FCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVC 219

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            PD++ Y ++I  F   G +  AC LFK M + G   +LV YS+++  +C+  +M +A  
Sbjct: 220 SPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEA 279

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
            L +M  +G    P+  TY ++I  +   G  KEA+ +   M      P+ VT++ L+  
Sbjct: 280 FLRQMVNKG--VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGS 337

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C  G + EA  + D +   G       Y  ++        L +   LF  ML  G+ PD
Sbjct: 338 LCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 397

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
               SV+I+     G + +   ++ ++   G    V +  ++ ++  LCR     +A + 
Sbjct: 398 IYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT--YTTVIAALCRIGKMDDAMEK 455

Query: 436 ARFMLKKRIWLQGPYVDKIVEH 457
              M+      QG   DK   H
Sbjct: 456 FNQMID-----QGVAPDKYAYH 472



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 158/334 (47%), Gaps = 44/334 (13%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIA 182
           VV++ M+  + +LC+  ++  EA  V   M      PD   Y  ++  +  KG   DM  
Sbjct: 328 VVTLNML--MGSLCKYGKI-KEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTD 384

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
             +LM G G+    PDI T+  +IK + N G L+ A  +F  M+ HG   ++V Y+ ++ 
Sbjct: 385 LFDLMLGDGIA---PDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIA 441

Query: 243 GICRLGSMERALELLGEMEKEG-------------GDCSP-------------------- 269
            +CR+G M+ A+E   +M  +G             G C+                     
Sbjct: 442 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRL 501

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           ++V ++S+I   C  G + +A  I D    +G  P+ V  S L+ G+C+ G +++A ++ 
Sbjct: 502 DIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVF 561

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           D +V+ G   +   Y +LV    +  R+ E   LF +ML  G+KP  +  +++I  L + 
Sbjct: 562 DAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVA 621

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           G+ +     + ++ + G   +++   ++++L G 
Sbjct: 622 GRTVPAKVKFHEMTESGI--AINKCTYNIVLRGF 653



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 131/283 (46%), Gaps = 3/283 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC   ++ ++AM    +M +  + PD   Y+ +I+ FC  G ++ A EL+ 
Sbjct: 434 VTYTTVIAALCRIGKM-DDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELIL 492

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +    +  DI+ + S+I   C  GR+ DA  +F +    G   + V YS L+DG C +G
Sbjct: 493 EIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVG 552

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ME+AL +   M   G    PNVV Y +++  +C  G + E L +   M   G  P+ + 
Sbjct: 553 KMEKALRVFDAMVSAG--IEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTIL 610

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + +I G  V G    A     ++   G   +   Y+ ++    + +   EA  LF ++ 
Sbjct: 611 YNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELR 670

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           A  VK D +  + MI  +    +V E   L+  I + G +  V
Sbjct: 671 AMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCV 713



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 3/244 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACG-LFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           DII    ++KGFC A R ++A   L       GC  ++ +YS LL  +C  G   +A +L
Sbjct: 149 DIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 208

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M + G  CSP+VV YT+VI  F  +G + +A  +   M   G  P+ VT S+++   
Sbjct: 209 LRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHAL 268

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    + +A   + ++V  G +     Y++L+     T + KEA ++F +M    + PD 
Sbjct: 269 CKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDV 328

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  ++++  LC  G++ E   +++ +   G    V S  + ++L G   K   V+   L 
Sbjct: 329 VTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS--YKIMLNGYATKGCLVDMTDLF 386

Query: 437 RFML 440
             ML
Sbjct: 387 DLML 390



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 82/180 (45%), Gaps = 6/180 (3%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + +  C + ++++   +   +V A  E   VV   ++      C+  R+ +E + + R
Sbjct: 542 SMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVN---GYCKIGRI-DEGLSLFR 597

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M +  ++P TI+YN +I      G  + A      M    +  +  TY  +++GF    
Sbjct: 598 EMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNR 657

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
             ++A  LFK ++      +++  + ++ G+ +   +E A +L   + + G    P VVT
Sbjct: 658 CFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSG--LVPCVVT 715


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 154/305 (50%), Gaps = 11/305 (3%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA LANE   +   M E     DT  YN VI  FC+ G +  A +L++ M +    P ++
Sbjct: 346 KAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVV 405

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY S+I G     RL++A  LF+  K +G   N+V YS+L+DG  ++G ++ A  ++ E+
Sbjct: 406 TYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL 465

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            ++G   +PNV T+  ++        + EAL     M+ L C PN++T S LI G C   
Sbjct: 466 MQKG--LTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVR 523

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
             ++A+    ++   G   +   Y++++  L +   + EA  LFS+  A+G  PD  + +
Sbjct: 524 KFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYN 583

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS---VLLLGLCRKNHSVEAAKLAR 437
            MI  L    + ++ + L+E+    G       +IH+   V+LL    K   +E A +  
Sbjct: 584 AMIEGLSSANKAMDAYALFEETRLKG------CNIHTKTCVVLLDALHKAECLEQAAIVG 637

Query: 438 FMLKK 442
            +LK+
Sbjct: 638 AVLKE 642



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 159/325 (48%), Gaps = 6/325 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+  RL +EA+ +  ++ +    P    YN +I  +   G    A  L++        P
Sbjct: 65  LCKANRL-DEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIP 123

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            +I Y  ++       R+E+A  +F+ MKR     N+  Y+ L+D +CR G +  ALE+ 
Sbjct: 124 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDA-VPNVPTYNILIDMLCREGKLNAALEIR 182

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +ME+ G    PNV+T   +I   C    ++EA  I + M+   C PN VT S+LI G  
Sbjct: 183 DDMERAG--LFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLG 240

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G +D+AY L +K++  G V     Y+SL+    +  R ++  K++ +M+ +G  PD  
Sbjct: 241 KCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLT 300

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             +  +  +   G+  +G  L+ +I   GF+   D+  +S+L+ GL +   + E  +L  
Sbjct: 301 LINTYMDCVFKAGETEKGRALFREINAHGFIP--DARSYSILIHGLVKAGLANETYELFY 358

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSG 462
            M ++   L     + +++   KSG
Sbjct: 359 AMKEQGCVLDTHAYNAVIDGFCKSG 383



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 141/298 (47%), Gaps = 7/298 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  K +G + SV     I     K R   EA+ +  +M   D  P+   YN +I + C
Sbjct: 112 LLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKR-DAVPNVPTYNILIDMLC 170

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            +G + AA E+   M    L+P+++T   MI   C A +LE+AC +F+ M    C  N V
Sbjct: 171 REGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAV 230

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGI 293
            +S+L+DG+ + G ++ A  L  +M     DC   P  + YTS+I+ F   G  ++   I
Sbjct: 231 TFSSLIDGLGKCGRVDDAYSLYEKML----DCGHVPGAIVYTSLIRSFFKCGRKEDGHKI 286

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M   GC+P+   I+T +      G  ++   L  ++ A G +     YS L+  LV+
Sbjct: 287 YKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVK 346

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
                E  +LF  M   G   D  A + +I   C  G+V + + L E+++  G   +V
Sbjct: 347 AGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTV 404



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 152/316 (48%), Gaps = 9/316 (2%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G +V   +++  F    K     +   + ++M      PD  + N  +    + G+    
Sbjct: 263 GAIVYTSLIRSFFKCGRK----EDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKG 318

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             L + +      PD  +Y  +I G   AG   +   LF  MK  GC  +  AY+A++DG
Sbjct: 319 RALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDG 378

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+ G + +A +LL EM+ +G    P VVTY SVI        + EA  + +  ++ G  
Sbjct: 379 FCKSGKVNKAYQLLEEMKVKGH--PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIK 436

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
            N V  S+LI GF   G +DEAY ++++++  G   +   ++ L+  LV+ + + EA   
Sbjct: 437 LNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALIC 496

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F  M      P+ +  S++I  LC   +  + F  +++++K+G     ++  ++ ++ GL
Sbjct: 497 FQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGL--KPNTITYTTMISGL 554

Query: 424 CRKNHSVEAAKL-ARF 438
            +  + +EA+ L +RF
Sbjct: 555 AKAGNILEASGLFSRF 570



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 4/211 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  L +  RL +EA  +  +     ++ + ++Y+++I  F + G +  A  +M+ +   
Sbjct: 410 VIDGLAKIDRL-DEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQK 468

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P++ T+  ++     A  + +A   F+ MK   C  N + YS L++G+CR+    +A
Sbjct: 469 GLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKA 528

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
                EM+K G    PN +TYT++I      G + EA G+  R +A G  P+  + + +I
Sbjct: 529 FVFWQEMQKLG--LKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMI 586

Query: 314 KGFCVEGNLDEAYQLIDKV-VAGGSVSSGGC 343
           +G        +AY L ++  + G ++ +  C
Sbjct: 587 EGLSSANKAMDAYALFEETRLKGCNIHTKTC 617



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E   ++G   +V     + +   KA   NEA+   + M +    P+ I Y+ +I   C
Sbjct: 461 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC 520

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
                  A    + M  + L P+ ITY +MI G   AG + +A GLF   K +G   +  
Sbjct: 521 RVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSA 580

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
           +Y+A+++G+        A  L  E   +G  C  N+ T T V+
Sbjct: 581 SYNAMIEGLSSANKAMDAYALFEETRLKG--C--NIHTKTCVV 619



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 89/183 (48%), Gaps = 3/183 (1%)

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
           + C    + EA+ + +++E     P     +T+I G+   G  DEAY L+++  A GS+ 
Sbjct: 64  VLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIP 123

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           S   Y+ ++  L + +R++EA ++F +M    V P+    +++I  LC  G++     + 
Sbjct: 124 SVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIR 182

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459
           +D+E+ G   +V +   ++++  LC+     EA  +   M  K           +++ L 
Sbjct: 183 DDMERAGLFPNVLT--VNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLG 240

Query: 460 KSG 462
           K G
Sbjct: 241 KCG 243



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 2/130 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC + R  N+A    ++M +  L+P+TI Y  +I    + G+++ A  L       
Sbjct: 515 LINGLC-RVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKAN 573

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  +Y +MI+G  +A +  DA  LF+  +  GC  +      LLD + +   +E+A
Sbjct: 574 GGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 633

Query: 254 LELLGEMEKE 263
             ++G + KE
Sbjct: 634 -AIVGAVLKE 642



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 89/208 (42%), Gaps = 6/208 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  K  G  ++V +   + +   K    +EA  ++ ++ +  L P+   +N ++    
Sbjct: 426 LFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV 485

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +  ++  A    + M  +   P+ ITY  +I G C   +   A   ++ M++ G   N +
Sbjct: 486 KAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTI 545

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ ++ G+ + G++  A  L    +  GG   P+  +Y ++I+         +A  + +
Sbjct: 546 TYTTMISGLAKAGNILEASGLFSRFKANGG--IPDSASYNAMIEGLSSANKAMDAYALFE 603

Query: 296 RMEALGCAPNRVT----ISTLIKGFCVE 319
                GC  +  T    +  L K  C+E
Sbjct: 604 ETRLKGCNIHTKTCVVLLDALHKAECLE 631


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 143/288 (49%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC+ +++  +A  +  +M    + P    Y  +I  FC+ G +  A +    M  
Sbjct: 465 KVIGFLCDASKV-EKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLH 523

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P+++TY ++I  +  A ++  A  LF++M   GC  N+V Y+AL+DG C+ G +E+
Sbjct: 524 KGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEK 583

Query: 253 ALELLGEMEKE-------------GGDCS-PNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A ++   M  +               +C  PNV+TY +++   C    +KEA  +LD M 
Sbjct: 584 ACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTML 643

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           A GC PN++    +I GFC  G L +A ++  K+   G   +   YSS +  L +  RL 
Sbjct: 644 AHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLD 703

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
              K+ SKML +   P+ +  + M+  LC  G+  E + L   +E+ G
Sbjct: 704 LVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKG 751



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 174/406 (42%), Gaps = 68/406 (16%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+ S++++  S+     E  K  G V SV    ++ +   KA L  +A     +M     
Sbjct: 471 CDASKVEKAFSLF----EEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGC 526

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + Y  +I  + +   M  ADEL + M L    P+++TY ++I G C AG++E AC 
Sbjct: 527 TPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQ 586

Query: 221 LFKVMK---------------------------------------------------RHG 229
           ++  M+                                                    HG
Sbjct: 587 IYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHG 646

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           C  N + Y A++DG C++G ++ A E+  +M + G   SPN+ TY+S I        +  
Sbjct: 647 CEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGY--SPNLYTYSSFIDCLFKDNRLDL 704

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
            L +L +M    C PN V  + ++ G C  G  DEAY+L+ K+   G   +   Y++++ 
Sbjct: 705 VLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMID 764

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
              ++ ++++  +LF  M + G  P+ +   V+I   C  G + E + L +++++  +  
Sbjct: 765 GFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPK 824

Query: 410 SVDSD-----------IHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            + S            I S+ LL    +N SV    L R ++   I
Sbjct: 825 HILSHRKIIEGFSQEFITSIGLLDELSENESVPVDSLYRILIDNYI 870



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 188/441 (42%), Gaps = 49/441 (11%)

Query: 45  NIE--KTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE 102
           NIE  +     + +L+ + V+EV++       ++ ++FF+WA  Q  Y H+  ++++  +
Sbjct: 90  NIETHQFFRQFRNQLNDSLVVEVMNNV--KNPELCVKFFLWAGRQIGYSHTPQVFDKLLD 147

Query: 103 M--SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           +    +  +  + +  +   K++   +  +++  +   C +    N A+  L ++ +F  
Sbjct: 148 LLGCNVNADDRVPLKFLMEIKDDDHELLRRLLNFLVRKCCRNGWWNMALEELGRLKDFGY 207

Query: 161 RPDTIIYNNVIRLFCE----------KGDMIA-------------ADELMKG------MG 191
           +P    YN +I++F            K +M++             A  L KG        
Sbjct: 208 KPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFD 267

Query: 192 LI----DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           LI    D  PD + Y  M+ G C A   E+A  +   M+   C  N+V Y  LL G  R 
Sbjct: 268 LIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRK 327

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G + R   +L  M  EG  C PN   + S+I  +C       A  +  +M   GC P  +
Sbjct: 328 GQLGRCKRILSMMITEG--CYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYL 385

Query: 308 TISTLIKGFCV--EGNLDEAYQLIDKVVAG----GSVSSGGCYSSLVVELVRTKRLKEAE 361
             +  I   C   E    +   L++K  +     G V +    S+    L    +  +A 
Sbjct: 386 VYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAF 445

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           K+  +M+  G  PD    S +I  LC   +V + F L+E++++ G + SV +  +++L+ 
Sbjct: 446 KIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYT--YTILID 503

Query: 422 GLCRKNHSVEAAKLARFMLKK 442
             C+     +A K    ML K
Sbjct: 504 SFCKAGLIQQARKWFDEMLHK 524



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 160/374 (42%), Gaps = 34/374 (9%)

Query: 93  SSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
            +  YNR     CE S  ++     +D++   +   C+ +V   +++ + C +       
Sbjct: 278 DTVFYNRMVSGLCEASLFEE----AMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRC 333

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             +L  M      P+  I+N++I  +C+  D   A +L K M      P  + Y   I  
Sbjct: 334 KRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGS 393

Query: 209 FCNAGRLEDACGLFKVMKRH------GCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            C+      +  L  V K +      G   N V  S     +C  G  ++A +++ EM  
Sbjct: 394 VCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMG 453

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
           +G    P+  TY+ VI   C    +++A  + + M+  G  P+  T + LI  FC  G +
Sbjct: 454 KGF--VPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLI 511

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            +A +  D+++  G   +   Y++L+   ++ K++  A++LF  ML  G KP+ +  + +
Sbjct: 512 QQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTAL 571

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD----------------IHSVLLLGLCRK 426
           I   C  GQ+ +   +Y  +   G + S D D                 +  L+ GLC+ 
Sbjct: 572 IDGHCKAGQIEKACQIYARMR--GDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKA 629

Query: 427 NHSVEAAKLARFML 440
           N   EA +L   ML
Sbjct: 630 NRVKEAHELLDTML 643



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           VL KM E    P+ +IY  ++   C+ G    A +LM  M      P+++TY +MI GF 
Sbjct: 708 VLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFG 767

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
            +G++E    LF+ M   GCA N + Y  L++  C  G ++ A +LL EM++       +
Sbjct: 768 KSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYW--PKH 825

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           ++++  +I+ F  + +   ++G+LD +      P       LI  +   G L+ A  L++
Sbjct: 826 ILSHRKIIEGFSQEFIT--SIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLE 883

Query: 331 KVVAGGS--VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           ++ +  S  VS+   Y+SL+  L    ++ +A +L++ M++  V P+
Sbjct: 884 EISSSPSHAVSNKYLYASLIENLSHASKVDKALELYASMISKNVVPE 930



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 101/256 (39%), Gaps = 35/256 (13%)

Query: 111 SIIIDVVEAYKEEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
            +++ V+    E  C  +V +  +++  LC+  +  +EA  ++ KM E    P+ + Y  
Sbjct: 703 DLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGK-TDEAYKLMLKMEEKGCNPNVVTYTA 761

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I  F + G +    EL + M      P+ ITY  +I   C+ G L++A  L   MK+  
Sbjct: 762 MIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTY 821

Query: 230 CAANLVA---------------------------------YSALLDGICRLGSMERALEL 256
              ++++                                 Y  L+D   + G +E AL+L
Sbjct: 822 WPKHILSHRKIIEGFSQEFITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDL 881

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L E+         N   Y S+I+       + +AL +   M +    P    +  LIKG 
Sbjct: 882 LEEISSSPSHAVSNKYLYASLIENLSHASKVDKALELYASMISKNVVPELSILVHLIKGL 941

Query: 317 CVEGNLDEAYQLIDKV 332
                  EA QL D +
Sbjct: 942 IKVDKWQEALQLSDSI 957


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 178/381 (46%), Gaps = 11/381 (2%)

Query: 33  ERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSY 90
           ERF   L+  K   + EK L  +  K+D   V EV+        +M  +FF WAA + +Y
Sbjct: 58  ERFIRILKIFKWGPDAEKALEVLMMKVDHWLVREVMKTDVGVSVKM--QFFRWAARKRNY 115

Query: 91  RH--SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
            H  S++M    C +  ++Q   +   + E  +   CVV+   +  I  +   A++ ++A
Sbjct: 116 EHDTSTYMALIRC-LEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKA 174

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIK 207
           + +  ++     +P    YN++I +   +G+     EL   M      +PD +TY ++I 
Sbjct: 175 VAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALIS 234

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            FC  GR + A  L   MK +G       Y+ L+  + +L ++  AL L  EM  +   C
Sbjct: 235 AFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQY--C 292

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+V TYT +I+     G + EA      M   GC P+ V ++ +I      G LD+A +
Sbjct: 293 RPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIK 352

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           L +++     + S   Y++++  L  +K R+ E    F +M  SG+ P     S++I   
Sbjct: 353 LFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGF 412

Query: 387 CLGGQVLEGFCLYEDIEKIGF 407
           C   +  +   L E++++ GF
Sbjct: 413 CKTNRTEKAMMLLEEMDEKGF 433



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 158/313 (50%), Gaps = 6/313 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    +I   C+  R  + A+W+L +M +  ++P   IY  ++ L  +  ++  A  L 
Sbjct: 226 TVTYSALISAFCKLGR-QDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLF 284

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M      PD+ TY  +I+G   AGRL++A   F  M+R GC  + V  + +++ + + 
Sbjct: 285 EEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKA 344

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEALGCAPNR 306
           G ++ A++L  EME     C P+VVTY ++I+ +F  K  + E     +RM+  G +P+ 
Sbjct: 345 GRLDDAIKLFEEMETL--RCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSP 402

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
            T S LI GFC     ++A  L++++   G       Y SL+  L + KR   A +LF +
Sbjct: 403 FTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQE 462

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +  +         +VMI+ L   G++ +   L++++ ++G   +V +  ++ L+ GL R 
Sbjct: 463 LKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYA--YNALMSGLARA 520

Query: 427 NHSVEAAKLARFM 439
               EA    R M
Sbjct: 521 GMLDEALTTMRRM 533



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 9/291 (3%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           + EGC     +M  + N   KA   ++A+ +  +M      P  + YN +I+   E    
Sbjct: 323 RREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSR 382

Query: 181 IAAD----ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
           ++      E MKG G+    P   TY  +I GFC   R E A  L + M   G      A
Sbjct: 383 VSEISSWFERMKGSGI---SPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAA 439

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y +L+D + +    + A EL  E+++  G  S  V  Y  +I+     G + +A+ + D 
Sbjct: 440 YCSLIDALGKAKRYDLANELFQELKENCGSSSARV--YAVMIKHLGKAGRLDDAVDLFDE 497

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M  LGC PN    + L+ G    G LDEA   + ++   G +     Y+ ++  L +T  
Sbjct: 498 MNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGG 557

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
              A  +   M  S +KPD ++ + ++  L   G   E   L +++  IGF
Sbjct: 558 PDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGF 608



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 65/134 (48%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+ +     GC  +V     + +   +A + +EA+  +R+M +    PD   YN ++  
Sbjct: 492 VDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNA 551

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             + G    A  ++  M    + PD ++Y +++    +AG  E+A  L K M   G   +
Sbjct: 552 LAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYD 611

Query: 234 LVAYSALLDGICRL 247
           L+ YS++L+ I ++
Sbjct: 612 LITYSSILEAIGKV 625


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 158/312 (50%), Gaps = 15/312 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD----------MIAA 183
           +I + C+   +   A  VL K+ +   +P+TI  N +I+  C  G           +  A
Sbjct: 103 LINSFCQLGHIP-SAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDA 161

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            +L   M L ++ PD+ T+  ++ GFC  GR+++A  +  +M   G    +V Y++L+DG
Sbjct: 162 VDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDG 221

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
              +  + +A  +   M + G   SP++ +Y+ +I  FC   MM EA+ +L  M      
Sbjct: 222 YFLVKQVNKAKSIFNTMAQLG--VSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQII 279

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN VT S+LI G C  G +  A +L+D++   G   +   YSS++  L +  ++  A  L
Sbjct: 280 PNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIAL 339

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
            ++M   G++P+    +++I+ LC  G++ +   ++ED+   G   +++   ++V++ G 
Sbjct: 340 LTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKG--HNLNVYTYTVMIQGF 397

Query: 424 CRKNHSVEAAKL 435
           C K    EA  L
Sbjct: 398 CDKGLFDEALTL 409



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 139/271 (51%), Gaps = 6/271 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  R+K+  +++  ++    + G V    +M   F      +  N+A  +   M +  +
Sbjct: 188 CKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYF----LVKQVNKAKSIFNTMAQLGV 243

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   Y+ +I  FC+   M  A EL+K M    + P+++TY S+I G C +G++  A  
Sbjct: 244 SPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALK 303

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M   G   N+V YS++LD +C+   ++ A+ LL +M+ +G    PN+ TYT +I+ 
Sbjct: 304 LVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQG--IQPNMYTYTILIKG 361

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +++A  + + +   G   N  T + +I+GFC +G  DEA  L+ K+   G + +
Sbjct: 362 LCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPN 421

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
              Y  +++ L +    + AEKL  +M+ + 
Sbjct: 422 AKTYEIIILSLFKKDENEMAEKLLCEMIETN 452



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 129/281 (45%), Gaps = 14/281 (4%)

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
           LI+ + + I Y S    F N   ++DA  LF  + +       + ++ +L  + +     
Sbjct: 20  LINTHFNFIPYFSTSTTFHNNNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYH 79

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
             L L  +ME  G    PN+V    +I  FC  G +  A  +L ++  +G  PN +T++T
Sbjct: 80  TVLYLSQKMEFRG--IKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNT 137

Query: 312 LIKGFCVE----------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           LIKG C+           G L +A  L +K++          ++ LV    +  R+KEA+
Sbjct: 138 LIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAK 197

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
            + + M+  G+KP  +  + ++    L  QV +   ++  + ++G    + S  +S+L+ 
Sbjct: 198 NVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQS--YSILIN 255

Query: 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           G C+     EA +L + M  K+I         +++ L KSG
Sbjct: 256 GFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSG 296


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 163/365 (44%), Gaps = 8/365 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C M  ++    I  D++      G V S      + +   K  L  EA  +  K+ +  +
Sbjct: 279 CRMEELEMALRITHDMIRL----GFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+   YN +I   C+      AD L K M    L P+ +TY  +I   C  G +EDA  
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALC 394

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M+  G    +  Y++L++G C+ GS++RA  LL  M KEG   +P   +Y+ +I  
Sbjct: 395 LFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG--LTPTAASYSPLIAG 452

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +   + +   M   G A N  T + LI GFC +  +DEA +L DK++    + +
Sbjct: 453 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 512

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ ++        +++A +L+ +M+  G+KPD      +I  LCL   V +      
Sbjct: 513 EVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVA 572

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           D+E     + +++   + LL G  R+    E   L   M  + + L       IV    K
Sbjct: 573 DLENS--YAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALK 630

Query: 461 SGDEE 465
             D+E
Sbjct: 631 QHDKE 635



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 142/326 (43%), Gaps = 40/326 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +++ LC+  R+  EA+ V   M    +  D + Y  ++  FC   ++  A  +   M  +
Sbjct: 239 LMYGLCKNMRV-QEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRL 297

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P       MI        +E+A  L   +   G   N+ AY+AL+D +C+    + A
Sbjct: 298 GFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDA 357

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  EM   G    PN VTY  +I   C +GM+++AL + D+M   G        ++LI
Sbjct: 358 DRLFKEMAGRG--LEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLI 415

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT------------------- 354
            G+C +G+LD A  L+  +V  G   +   YS L+  L R                    
Sbjct: 416 NGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIA 475

Query: 355 ----------------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                           K++ EA +LF KM+ S V P+ +  +VMI   CL G + + F L
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQL 535

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLC 424
           Y+ + ++G     D+  +  L+ GLC
Sbjct: 536 YDQMVEMGL--KPDNYTYRSLISGLC 559



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 161/372 (43%), Gaps = 40/372 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++  +  +A+ +  KM +  ++     YN++I  +C++G +  A  L+ GM   
Sbjct: 379 LIHALCKRG-MIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKE 437

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P   +Y  +I G C  G L     L + M   G A N   ++AL++G C+   M+ A
Sbjct: 438 GLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEA 497

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  +M     +  PN VT+  +I+ +C  G +++A  + D+M  +G  P+  T  +LI
Sbjct: 498 ARLFDKMIDS--NVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLI 555

Query: 314 KGFCV-----------------------------------EGNLDEAYQLIDKVVAGGSV 338
            G C+                                   EG   E Y L D++   G  
Sbjct: 556 SGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVK 615

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                ++ +V   ++    +++  LF +M   GVKPD +  + MI  L     +++    
Sbjct: 616 LDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNC 675

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
           ++ +   G+  S ++  H+VL+  LC+  +   A  L + ML   +       +  +++ 
Sbjct: 676 WDQMVVDGY--SPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYF 733

Query: 459 KKSGDEELITNL 470
              GD E   +L
Sbjct: 734 ATEGDMEKAKDL 745



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 144/345 (41%), Gaps = 36/345 (10%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +++F+L  K R    A  +  KM +  +  D  +Y   IR +CE  ++  A  L+  M  
Sbjct: 168 QILFSLV-KIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMES 226

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             +    + Y  ++ G C   R+++A  +  VM   G  A+ V Y  L+ G CR+  +E 
Sbjct: 227 EGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEM 286

Query: 253 ALELLGEMEKEG-----GDCS----------------------------PNVVTYTSVIQ 279
           AL +  +M + G      +CS                            PNV  Y ++I 
Sbjct: 287 ALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALID 346

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C      +A  +   M   G  PN VT + LI   C  G +++A  L DK+   G   
Sbjct: 347 KLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKV 406

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+SL+    +   L  A  L S M+  G+ P   + S +I  LC  G +     L+
Sbjct: 407 TVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELH 466

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            ++ + G   + ++   + L+ G C+     EAA+L   M+   +
Sbjct: 467 REMAERGI--AWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNV 509



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 145/293 (49%), Gaps = 10/293 (3%)

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           IR F    D+   D++++    +D Y     Y + I+ +C +  L+ A GL   M+  G 
Sbjct: 176 IRQFALARDLF--DKMLQSGVHLDEY----VYTAGIRAYCESRNLDGARGLVVRMESEGV 229

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
            A+ V Y+ L+ G+C+   ++ A+E+   M   G   + + VTY +++  FC    ++ A
Sbjct: 230 KASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIG--VTADEVTYRTLVYGFCRMEELEMA 287

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           L I   M  LG  P+    S +I     +  ++EA+ L  K+   G V +   Y++L+ +
Sbjct: 288 LRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDK 347

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L + +R  +A++LF +M   G++P+ +  +++I  LC  G + +  CL++ +   G   +
Sbjct: 348 LCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT 407

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V    ++ L+ G C++     A  L   M+K+ +         ++  L ++GD
Sbjct: 408 VYP--YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 170/388 (43%), Gaps = 20/388 (5%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQM---GIRFFIWAALQSSYRHSSFMYNRA 100
           +N+     T    ++  C++  + + F    QM   G++         +Y + S + +  
Sbjct: 507 SNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLK-------PDNYTYRSLI-SGL 558

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C  S + +    + D+  +Y     + +  +  +++    + R   E   +  +M    +
Sbjct: 559 CLTSGVSKANEFVADLENSY---AVLNNFSLTALLYGFFREGRFT-ETYHLWDEMAVRGV 614

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           + D + +  ++    ++ D   +  L + M    + PD I Y  MI        +  A  
Sbjct: 615 KLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            +  M   G + N V ++ L++ +C+ G +  A  L  EM    G+  PN  TY   +  
Sbjct: 675 CWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEML--AGNVLPNKFTYNCFLDY 732

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           F  +G M++A  +   M   G   + V+ + LIKG C  G + EA  L+ K+   G    
Sbjct: 733 FATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPD 791

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              YS+++ EL +   + +A +L+++ML  G+KPD +A ++ IR   + G+  +   +Y 
Sbjct: 792 CISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYT 851

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           ++ + G   + D+  +  LL G+    H
Sbjct: 852 NMIRSGVQPNWDT--YRALLSGISLMLH 877


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  VL  + ++ LRP  + +N +I  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 153 AQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 212

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   +++DA  LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 213 GLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS--L 270

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP+++TY ++I   C KG +K+A  ++D M   G  P+++T +TLI G C EG+++ A++
Sbjct: 271 SPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFE 330

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KP+
Sbjct: 331 HQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPN 378



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 164/365 (44%), Gaps = 63/365 (17%)

Query: 81  FIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140
           ++++ L ++Y  S F+ + A E  R+ +     + +    K    ++ +K  K+++    
Sbjct: 65  YVFSGLITAYLESGFLRD-AIECYRLTREHKFWVPLDTCRKVLEHLMKLKYFKLVWGF-- 121

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
                       +++ E         +N +++ FC++GD+  A  ++  +    L P ++
Sbjct: 122 -----------YKEILECGYPASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVV 170

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           ++ ++I G+   G L++   L   M   G   ++  YS L++G+C+   M+ A EL  EM
Sbjct: 171 SFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 230

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G    PN VT+T++I   C  G +  A+ I  +M +   +P+ +T +TLI G C +G
Sbjct: 231 LDKG--MVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKG 288

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            L +A+ LID                                   +M   G+KPD +  +
Sbjct: 289 ELKQAHDLID-----------------------------------EMSMEGLKPDKITYT 313

Query: 381 VMIRELCLGGQVLEGF-----CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +I   C  G +   F      + E+I        +D  +++ L+ GLC++  SV+A K+
Sbjct: 314 TLIDGCCKEGDMETAFEHQKRMIQENIR-------LDDVVYTALISGLCQEGRSVDAEKM 366

Query: 436 ARFML 440
            R ML
Sbjct: 367 LREML 371



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 4/188 (2%)

Query: 119 AYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
           A    G    V    V+ N LC+++++ ++A  +  +M +  + P+ + +  +I   C+ 
Sbjct: 194 AMHASGVQPDVYTYSVLINGLCKESKM-DDANELFDEMLDKGMVPNGVTFTTLIDGHCKN 252

Query: 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           G +  A E+ K M    L PD+ITY ++I G C  G L+ A  L   M   G   + + Y
Sbjct: 253 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITY 312

Query: 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
           + L+DG C+ G ME A E    M +E  +   + V YT++I   C +G   +A  +L  M
Sbjct: 313 TTLIDGCCKEGDMETAFEHQKRMIQE--NIRLDDVVYTALISGLCQEGRSVDAEKMLREM 370

Query: 298 EALGCAPN 305
            ++G  PN
Sbjct: 371 LSVGLKPN 378



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 8/189 (4%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
           + +Q      S + N  C+ S++     +  ++++    +G V + V    +I   C+  
Sbjct: 198 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLD----KGMVPNGVTFTTLIDGHCKNG 253

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R+ + AM + ++M    L PD I YN +I   C+KG++  A +L+  M +  L PD ITY
Sbjct: 254 RV-DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITY 312

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G +E A    K M +     + V Y+AL+ G+C+ G    A ++L EM  
Sbjct: 313 TTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLS 372

Query: 263 EGGDCSPNV 271
            G    PN 
Sbjct: 373 VG--LKPNT 379


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 172/368 (46%), Gaps = 44/368 (11%)

Query: 134 VIFNLC----EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           V++N+C     K    + A     +M    L PD + Y  +I + C+   +  A EL + 
Sbjct: 274 VLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEE 333

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           + L    P +  Y +MI G+ +AG+ ++A  L +  KR GC  +++AY+ +L  + R G 
Sbjct: 334 LDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGK 393

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-------- 301
           +E AL +  EM +   D +PN+ TY  +I + C  G ++ AL + D M+  G        
Sbjct: 394 VEEALRIHDEMRQ---DAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTV 450

Query: 302 ---------------------------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
                                      C+P+  T  +LI G    G +D+AY L +K++ 
Sbjct: 451 NIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLD 510

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
              + +   Y+SL+    +  R ++  K++ +M+  G  PD +  +  +  +   G+V +
Sbjct: 511 SDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEK 570

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           G  L+E+I+  G +  V S  +S+L+ GL +   S E  KL   M ++ + L     + +
Sbjct: 571 GRALFEEIKAQGLVPDVRS--YSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTV 628

Query: 455 VEHLKKSG 462
           ++   KSG
Sbjct: 629 IDGFCKSG 636



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 156/318 (49%), Gaps = 4/318 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  K +G V  V+   ++ +   KA  + E   +  +M E  L  D + YN VI  FC
Sbjct: 574 LFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFC 633

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G +  A +L++ M    L P ++TY S++ G     RL++A  LF+  K  G   N+V
Sbjct: 634 KSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVV 693

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS+L+DG  ++G ++ A  +L E+ ++G   +PN  T+  ++        + EA     
Sbjct: 694 IYSSLIDGFGKVGRIDEAYLILEELMQKG--LTPNSYTWNCLLDALVKAEEIDEAQVCFQ 751

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+ L C+PN +T S +I G C+    ++A+    ++   G   +   Y++++  L +  
Sbjct: 752 NMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAG 811

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            + EA  LF +  ASG  PD    + MI  L    + ++ + ++E+    G    V+S  
Sbjct: 812 NVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKG--CRVNSKT 869

Query: 416 HSVLLLGLCRKNHSVEAA 433
             VLL  L + +   +AA
Sbjct: 870 CVVLLDALHKADCLEQAA 887



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 149/296 (50%), Gaps = 3/296 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           ++E  K +GC+ SV     I     +     EA+ +  +M + D  P+   YN +I + C
Sbjct: 365 LLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQ-DAAPNLTTYNILIDMLC 423

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G++ AA ++   M    L+P+I+T   MI   C A +L++AC +F  +    C+ +  
Sbjct: 424 KAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSR 483

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            + +L+DG+ R G ++ A  L  +M     D  PNVV YTS+IQ F   G  ++   I  
Sbjct: 484 TFCSLIDGLGRRGRVDDAYSLYEKMLD--SDQIPNVVVYTSLIQNFFKCGRKEDGHKIYK 541

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   GC+P+ + +++ +      G +++   L +++ A G V     YS L+  LV+  
Sbjct: 542 EMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAG 601

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
             +E  KLF +M   G+  D LA + +I   C  G+V + + L E+++  G   +V
Sbjct: 602 FSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTV 657



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 145/294 (49%), Gaps = 2/294 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V +  KE G   ++  + ++ +   KA+  +EA  +   +      PD+  + ++I  
Sbjct: 432 LKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDG 491

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
              +G +  A  L + M   D  P+++ Y S+I+ F   GR ED   ++K M   GC+ +
Sbjct: 492 LGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPD 551

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           L+  ++ +D + + G +E+   L  E++ +G    P+V +Y+ +I      G  +E   +
Sbjct: 552 LMLLNSYMDCVFKAGEVEKGRALFEEIKAQG--LVPDVRSYSILIHGLVKAGFSRETYKL 609

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M+  G   + +  +T+I GFC  G +D+AYQL++++   G   +   Y S+V  L +
Sbjct: 610 FYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAK 669

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
             RL EA  LF +  + GV  + +  S +I      G++ E + + E++ + G 
Sbjct: 670 IDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL 723



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 137/286 (47%), Gaps = 7/286 (2%)

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
           WV RK  +    P+  +YN  + +     ++   +++++ M +          V ++  F
Sbjct: 122 WVERKTQQAHC-PE--VYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASF 178

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
             + +L++A G+ ++M++        AY+ L+  +      +  L L  +M++ G +   
Sbjct: 179 VKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEA-- 236

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           NV  +T+++++F  +G +  AL +LD M++     + V  +  I  F   G +D A++  
Sbjct: 237 NVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFF 296

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            ++ A G V     Y++L+  L + +RL EA +LF ++  +   P   A + MI      
Sbjct: 297 HEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSA 356

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G+  E + L E  ++ G + SV +  ++ +L  L RK    EA ++
Sbjct: 357 GKFDEAYSLLERQKRKGCIPSVIA--YNCILTCLGRKGKVEEALRI 400



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 130/288 (45%), Gaps = 11/288 (3%)

Query: 180 MIAADELMKGMGLIDLY------PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            + + +L +  G+I++       P    Y ++I     A R +    LF  M+  G  AN
Sbjct: 178 FVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEAN 237

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  ++ L+    R G ++ AL LL EM+      + ++V Y   I  F   G +  A   
Sbjct: 238 VHLFTTLVRVFAREGRIDAALSLLDEMK--SNSFTADLVLYNVCIDCFGKVGKVDMAWKF 295

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M+A G  P+ VT +TLI   C    LDEA +L +++    SV     Y+++++    
Sbjct: 296 FHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGS 355

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
             +  EA  L  +    G  P  +A + ++  L   G+V E   +++++ +    ++ + 
Sbjct: 356 AGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQD---AAPNL 412

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
             +++L+  LC+      A K+   M +  ++     V+ +++ L K+
Sbjct: 413 TTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKA 460


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 163/365 (44%), Gaps = 8/365 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C M  ++    I  D++      G V S      + +   K  L  EA  +  K+ +  +
Sbjct: 279 CRMEELEMALRITHDMIRL----GFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+   YN +I   C+      AD L K M    L P+ +TY  +I   C  G +EDA  
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALC 394

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M+  G    +  Y++L++G C+ GS++RA  LL  M KEG   +P   +Y+ +I  
Sbjct: 395 LFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG--LTPTAASYSPLIAG 452

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +   + +   M   G A N  T + LI GFC +  +DEA +L DK++    + +
Sbjct: 453 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 512

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ ++        +++A +L+ +M+  G+KPD      +I  LCL   V +      
Sbjct: 513 EVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVA 572

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           D+E     + +++   + LL G  R+    E   L   M  + + L       IV    K
Sbjct: 573 DLENS--YAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALK 630

Query: 461 SGDEE 465
             D+E
Sbjct: 631 QHDKE 635



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 142/326 (43%), Gaps = 40/326 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +++ LC+  R+  EA+ V   M    +  D + Y  ++  FC   ++  A  +   M  +
Sbjct: 239 LMYGLCKNMRV-QEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRL 297

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P       MI        +E+A  L   +   G   N+ AY+AL+D +C+    + A
Sbjct: 298 GFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDA 357

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  EM   G    PN VTY  +I   C +GM+++AL + D+M   G        ++LI
Sbjct: 358 DRLFKEMAGRG--LEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLI 415

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT------------------- 354
            G+C +G+LD A  L+  +V  G   +   YS L+  L R                    
Sbjct: 416 NGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIA 475

Query: 355 ----------------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                           K++ EA +LF KM+ S V P+ +  +VMI   CL G + + F L
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQL 535

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLC 424
           Y+ + ++G     D+  +  L+ GLC
Sbjct: 536 YDQMVEMGL--KPDNYTYRSLISGLC 559



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 161/372 (43%), Gaps = 40/372 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++  +  +A+ +  KM +  ++     YN++I  +C++G +  A  L+ GM   
Sbjct: 379 LIHALCKRG-MIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKE 437

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P   +Y  +I G C  G L     L + M   G A N   ++AL++G C+   M+ A
Sbjct: 438 GLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEA 497

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  +M     +  PN VT+  +I+ +C  G +++A  + D+M  +G  P+  T  +LI
Sbjct: 498 ARLFDKMID--SNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLI 555

Query: 314 KGFCV-----------------------------------EGNLDEAYQLIDKVVAGGSV 338
            G C+                                   EG   E Y L D++   G  
Sbjct: 556 SGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVK 615

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                ++ +V   ++    +++  LF +M   GVKPD +  + MI  L     +++    
Sbjct: 616 LDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNC 675

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
           ++ +   G+  S ++  H+VL+  LC+  +   A  L + ML   +       +  +++ 
Sbjct: 676 WDQMVVDGY--SPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYF 733

Query: 459 KKSGDEELITNL 470
              GD E   +L
Sbjct: 734 ATEGDMEKAKDL 745



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 144/345 (41%), Gaps = 36/345 (10%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +++F+L  K R    A  +  KM +  +  D  +Y   IR +CE  ++  A  L+  M  
Sbjct: 168 QILFSLV-KIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMES 226

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             +    + Y  ++ G C   R+++A  +  VM   G  A+ V Y  L+ G CR+  +E 
Sbjct: 227 EGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEM 286

Query: 253 ALELLGEMEKEG-----GDCS----------------------------PNVVTYTSVIQ 279
           AL +  +M + G      +CS                            PNV  Y ++I 
Sbjct: 287 ALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALID 346

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C      +A  +   M   G  PN VT + LI   C  G +++A  L DK+   G   
Sbjct: 347 KLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKV 406

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+SL+    +   L  A  L S M+  G+ P   + S +I  LC  G +     L+
Sbjct: 407 TVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELH 466

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            ++ + G   + ++   + L+ G C+     EAA+L   M+   +
Sbjct: 467 REMAERGI--AWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNV 509



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 145/293 (49%), Gaps = 10/293 (3%)

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           IR F    D+   D++++    +D Y     Y + I+ +C +  L+ A GL   M+  G 
Sbjct: 176 IRQFALARDLF--DKMLQSGVHLDEY----VYTAGIRAYCESRNLDGARGLVVRMESEGV 229

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
            A+ V Y+ L+ G+C+   ++ A+E+   M   G   + + VTY +++  FC    ++ A
Sbjct: 230 KASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIG--VTADEVTYRTLVYGFCRMEELEMA 287

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           L I   M  LG  P+    S +I     +  ++EA+ L  K+   G V +   Y++L+ +
Sbjct: 288 LRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDK 347

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L + +R  +A++LF +M   G++P+ +  +++I  LC  G + +  CL++ +   G   +
Sbjct: 348 LCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT 407

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V    ++ L+ G C++     A  L   M+K+ +         ++  L ++GD
Sbjct: 408 VYP--YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 169/383 (44%), Gaps = 20/383 (5%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQM---GIRFFIWAALQSSYRHSSFMYNRA 100
           +N+     T    ++  C++  + + F    QM   G++         +Y + S + +  
Sbjct: 507 SNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLK-------PDNYTYRSLI-SGL 558

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C  S + +    + D+  +Y     + +  +  +++    + R   E   +  +M    +
Sbjct: 559 CLTSGVSKANEFVADLENSY---AVLNNFSLTALLYGFFREGRFT-ETYHLWDEMAVRGV 614

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           + D + +  ++    ++ D   +  L + M    + PD I Y  MI        +  A  
Sbjct: 615 KLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            +  M   G + N V ++ L++ +C+ G +  A  L  EM    G+  PN  TY   +  
Sbjct: 675 CWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEML--AGNVLPNKFTYNCFLDY 732

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           F  +G M++A  +   M   G   + V+ + LIKG C  G + EA  L+ K+   G    
Sbjct: 733 FATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPD 791

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              YS+++ EL +   + +A +L+++ML  G+KPD +A ++ IR   + G+  +   +Y 
Sbjct: 792 CISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYT 851

Query: 401 DIEKIGFLSSVDSDIHSVLLLGL 423
           ++ + G   + D+  +  LL G+
Sbjct: 852 NMIRSGVQPNWDT--YRALLSGI 872


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           KVI  LC   ++  +A  + ++M    + PD   Y  +I  FC+ G +  A  L + M  
Sbjct: 462 KVITFLCHATKV-EKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRS 520

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   P ++TY ++I  +  A ++  A  +F  M   GC  N V Y AL+DG+C+ G++ +
Sbjct: 521 VGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISK 580

Query: 253 ALE----LLGEMEKEGGD----------CSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A E    L+G  +    D           +PNVVTY +++   C    +  A  +LD M 
Sbjct: 581 AFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAML 640

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
           + GC PN +    LI GFC  G +D A ++  ++   G + S   Y+SL+  + +  RL 
Sbjct: 641 SSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLD 700

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            A K+ S+ML     P+ +  + MI  LC  G+  +   L   +E+ G
Sbjct: 701 LAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 748



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 92/437 (21%), Positives = 169/437 (38%), Gaps = 84/437 (19%)

Query: 47  EKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM--- 103
           E+ L   +  L  + V+ VL        ++  RFF+WA  Q  Y H+   Y+   +    
Sbjct: 93  ERVLRRCRGFLTDSVVVAVLG-AVRDAPELCARFFLWAERQVGYSHTGACYDALADALGF 151

Query: 104 -SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP 162
             R +    ++ ++ E  +E    V  +++ V+   C +  + NEA+  L ++ +F  RP
Sbjct: 152 DGRARDAERLLREIGEEDRE----VLGRLLNVLVRRCCRGGMWNEALEELGRLKDFGYRP 207

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMG-----------------------------LI 193
             + YN ++++    G +     + K M                              +I
Sbjct: 208 SKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMI 267

Query: 194 ---DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
              D   D +    MI G   A   ++A      M+ + C  N+V Y  LL G  +   +
Sbjct: 268 EREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQL 327

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP------ 304
                ++  M  EG  C+PN   + S++  +C +     A  +L+RM   GC P      
Sbjct: 328 GWCKRIINMMMTEG--CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYN 385

Query: 305 -----------------------------------NRVTISTLIKGFCVEGNLDEAYQLI 329
                                              N+V ++   +  C  G  D+A+QLI
Sbjct: 386 IFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLI 445

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            +++  G V     YS ++  L    ++++A  LF +M   GV PD    +++I   C  
Sbjct: 446 KEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKA 505

Query: 390 GQVLEGFCLYEDIEKIG 406
           G + +   L+E++  +G
Sbjct: 506 GLIEQAQWLFEEMRSVG 522



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 18/249 (7%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  +  GC  +V     + +   KA+   +A  +  +M +   RP+ + Y  ++   C
Sbjct: 514 LFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLC 573

Query: 176 EKGDMIAADELM-KGMGLID---------------LYPDIITYVSMIKGFCNAGRLEDAC 219
           + G++  A E+  K +G  D               L P+++TY +++ G C A +++ A 
Sbjct: 574 KAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAH 633

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M   GC  N + Y AL+DG C+ G ++ A E+  +M K G    P+V TYTS+I 
Sbjct: 634 ELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGY--LPSVHTYTSLID 691

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                G +  A+ +L +M    C PN VT + +I G C  G  ++A +L+  +   G   
Sbjct: 692 RMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSP 751

Query: 340 SGGCYSSLV 348
           +   Y++L+
Sbjct: 752 NVVTYTALI 760



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 18/262 (6%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA L  +A W+  +M      P  + Y  +I  + +   +  A+++   M      P+ +
Sbjct: 504 KAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDV 563

Query: 201 TYVSMIKGFCNAGRLE----------------DACGLFKVMKRHGCAANLVAYSALLDGI 244
           TY +++ G C AG +                 D+   F    RH  A N+V Y AL+DG+
Sbjct: 564 TYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGL 623

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+   ++ A ELL  M   G  C PN + Y ++I  FC  G +  A  +  +M   G  P
Sbjct: 624 CKAHKVDHAHELLDAMLSSG--CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 681

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           +  T ++LI     +G LD A +++ +++      +   Y++++  L R    ++A KL 
Sbjct: 682 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 741

Query: 365 SKMLASGVKPDGLACSVMIREL 386
           S M   G  P+ +  + +I  L
Sbjct: 742 SLMEEKGCSPNVVTYTALIDGL 763



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 36/146 (24%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--- 190
           ++  LC KA   + A  +L  M      P+ I+Y+ +I  FC+ G + +A E+   M   
Sbjct: 619 LVDGLC-KAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKC 677

Query: 191 -------------------GLIDL-------------YPDIITYVSMIKGFCNAGRLEDA 218
                              G +DL              P+++TY +MI G C  G  E A
Sbjct: 678 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKA 737

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGI 244
             L  +M+  GC+ N+V Y+AL+DG+
Sbjct: 738 LKLLSLMEEKGCSPNVVTYTALIDGL 763


>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
          Length = 618

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 149/312 (47%), Gaps = 12/312 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+ +RI +  +I +D+           +V +   + +   ++  A EA+   +++   +L
Sbjct: 289 CKANRITEAKNIFLDM----PRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKEL 344

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           RPD    + V+R  C+ G M  A   ++ M    +  +   Y  +I  +C +G L++A  
Sbjct: 345 RPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALV 404

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
               M   G   N+V YS+L+DG  + G ME A+ +  EM  +G    PNVVTYT++I  
Sbjct: 405 TCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKG--VEPNVVTYTALIHG 462

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI------DKVVA 334
               G M  A  +   ME  G   N +T+S L+ G C E  + +A + I       K   
Sbjct: 463 HAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEK 522

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
             S+++   Y +L+  L    +  EA   FS M  SG+ PD    +++IR LC+ G VL 
Sbjct: 523 NPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLN 582

Query: 395 GFCLYEDIEKIG 406
              LY D+ K+G
Sbjct: 583 AMMLYADMVKVG 594



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 152/307 (49%), Gaps = 5/307 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I+ LCE+  +  +A  +  +M E  +RP+   YN ++    ++ ++  A     
Sbjct: 209 VTYTTMIYALCEEDCIG-DAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYY 267

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +    L P+ + + ++I G C A R+ +A  +F  M R+  A  +  Y++L+ G  R G
Sbjct: 268 DLLKCGLVPNDVIFTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSG 327

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
             + AL    E+ ++  +  P+  T + V++  C  G M+ A   L+ M+  G A N   
Sbjct: 328 YAQEALAFFQEIIRK--ELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAA 385

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + LI  +C  GNLDEA     ++   G   +   YSSL+    +   ++ A  ++++M+
Sbjct: 386 YNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMV 445

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           A GV+P+ +  + +I      G +   F L +++E+ G  S+  +   SVL+ GLCR+N 
Sbjct: 446 AKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITV--SVLVDGLCRENR 503

Query: 429 SVEAAKL 435
             +A + 
Sbjct: 504 VQDAVRF 510



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 122/291 (41%), Gaps = 6/291 (2%)

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           M   DE +   G +   P +    +++ G   A  L     LF  M   G   ++V Y+ 
Sbjct: 119 MALPDEALSVFGRLRELPALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNT 178

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L++     G + +A E+  +M     D  PNVVTYT++I   C +  + +A G+   M+ 
Sbjct: 179 LINACRHQGDVAKAWEVWDQMVARRID--PNVVTYTTMIYALCEEDCIGDAEGLFLEMKE 236

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  PN  T + L+       N+  A      ++  G V +   +++L+  L +  R+ E
Sbjct: 237 AGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCKANRITE 296

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A+ +F  M    V P     + +I      G   E    +++I +       D    S++
Sbjct: 297 AKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKELRP--DEFTCSIV 354

Query: 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG--DEELIT 468
           + GLC       A +    M +  I L     + +++   KSG  DE L+T
Sbjct: 355 VRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVT 405



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 100/227 (44%), Gaps = 7/227 (3%)

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           A   L+  + ++   + AL + G + +      P +    +++       M+     + D
Sbjct: 108 ALGVLVIALSQMALPDEALSVFGRLRE-----LPALPACNAILDGLVKAHMLARVWELFD 162

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   G  P+ VT +TLI     +G++ +A+++ D++VA     +   Y++++  L    
Sbjct: 163 EMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEED 222

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            + +AE LF +M  +G++P+    + ++        +      Y D+ K G +   +  I
Sbjct: 223 CIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVP--NDVI 280

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            + L+ GLC+ N   EA  +   M +  +    P  + ++    +SG
Sbjct: 281 FTTLIDGLCKANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSG 327


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 186/399 (46%), Gaps = 9/399 (2%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE- 102
           ++ +K L     K+  + V+EVL R   +   + + FF WA  Q  +++++  YN   E 
Sbjct: 108 SHADKLLEDASIKVSPSLVVEVLKR-LSNAGVIALSFFTWAEKQKGFKYNTESYNALIEA 166

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP 162
           + +IKQ   +I  +V   K    +++     +I     +AR   EA+    +M EF  + 
Sbjct: 167 LGKIKQF-KLIRSLVNEMKSRK-LLNKDTFALISRRHARARKVEEAIEAFERMEEFGFKL 224

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           +T  +N ++   C+   +  A+++   M      PDI +Y  +++G+     L     ++
Sbjct: 225 ETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNLLRLDEVY 284

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             MK  G   ++V Y  L+   C+    + A+EL  EM  E  +C P    Y ++I    
Sbjct: 285 LEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEM--EAKNCKPTPHVYCTLINGLG 342

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            +  + EAL   +R ++ G  P   T ++L+  +C    +D+A+Q+ID++    +  +  
Sbjct: 343 SEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSR 402

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKML-ASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
            Y  ++  L++ +R  EA   F KM    G +P      +++R  C   +V     +++ 
Sbjct: 403 TYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQ 462

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           ++  G L  +   ++S L+  LC KN   EA K  + ML
Sbjct: 463 MKAKGVLPGM--HMYSDLITSLCHKNKLGEACKYFQEML 499



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 3/160 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP-EFDLRPDTIIYNNVIR 172
             V++  ++     + +   +I +   KAR  NEA +  +KM  E    P    Y  ++R
Sbjct: 386 FQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVR 445

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
           +FC +  +  A ++   M    + P +  Y  +I   C+  +L +AC  F+ M   G   
Sbjct: 446 MFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAGIRP 505

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
               +S L   +   G  + AL L  ++ K  G  +P VV
Sbjct: 506 PAKMFSNLKQALLDEGKNDEALNLARKINKLRG--TPLVV 543


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 183/377 (48%), Gaps = 14/377 (3%)

Query: 93  SSFMYNRACEMSRIKQNPSI--IIDVVEAYKEEGCV---VSVKMMKVIFNLCEKARLANE 147
           SSF+ N +       Q PSI  + D V  +    C+     +     I +   K +  + 
Sbjct: 19  SSFLQNSSHSHFH-SQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYST 77

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +  ++    ++PD I  N +I  FC  G +     ++  +      PD +T  ++IK
Sbjct: 78  AVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIK 137

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G+++ A      +   G   N V+Y+ L++G+C++G    A++LL ++  +G   
Sbjct: 138 GLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKI--DGRLT 195

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PNV  Y+++I   C   ++ EA G+   M   G + + VT STLI GFC+EG L EA  
Sbjct: 196 KPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIG 255

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L++++V      +   Y+ LV  L +  ++KEA+ + + ML + VKPD +  S ++    
Sbjct: 256 LLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYF 315

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIH--SVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           L  +V +   ++  +  +G    V  D+H  ++L+ G C+     EA  L + M +K + 
Sbjct: 316 LVYEVKKAQHVFNAMSLMG----VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMV 371

Query: 446 LQGPYVDKIVEHLKKSG 462
                   +++ L KSG
Sbjct: 372 PGIVTYSSLIDGLCKSG 388



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 155/305 (50%), Gaps = 4/305 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V+M   I +   K +L +EA  +  +M    +  D + Y+ +I  FC +G +  A  L+
Sbjct: 198 NVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLL 257

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M L  + P++ TY  ++   C  G++++A  +  VM +     +++ YS L+DG   +
Sbjct: 258 NEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLV 317

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             +++A  +   M   G   +P+V TYT +I  FC   M+ EAL +   M      P  V
Sbjct: 318 YEVKKAQHVFNAMSLMG--VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIV 375

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S+LI G C  G +   + LID++   G  +    YSSL+  L +   L  A  LF+KM
Sbjct: 376 TYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKM 435

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
               ++P+    ++++  LC GG++ +   +++D+   G+  +V +  ++V++ G C++ 
Sbjct: 436 KDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYT--YNVMINGHCKQG 493

Query: 428 HSVEA 432
              EA
Sbjct: 494 LLEEA 498



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 139/272 (51%), Gaps = 6/272 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  ++K+  S++  +++A  +   +    +M   F + E      +A  V   M    +
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYE----VKKAQHVFNAMSLMGV 335

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   Y  +I  FC+   +  A  L K M   ++ P I+TY S+I G C +GR+     
Sbjct: 336 TPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWD 395

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M+  G  A+++ YS+L+DG+C+ G ++RA+ L  +M+ +  +  PN+ T+T ++  
Sbjct: 396 LIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQ--EIRPNIFTFTILLDG 453

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +K+A  +   +   G   N  T + +I G C +G L+EA  ++ K+   G + +
Sbjct: 454 LCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPN 513

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
              + ++++ L +     +AEKL  +M+A G+
Sbjct: 514 AFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 155/309 (50%), Gaps = 5/309 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I+  C + +L  EA+ +L +M    + P+   YN ++   C++G +  A  ++  M   
Sbjct: 240 LIYGFCIEGKL-KEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKA 298

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ITY +++ G+     ++ A  +F  M   G   ++  Y+ L++G C+   ++ A
Sbjct: 299 CVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEA 358

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L L  EM ++  +  P +VTY+S+I   C  G +     ++D M   G   + +T S+LI
Sbjct: 359 LNLFKEMHQK--NMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLI 416

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G+LD A  L +K+       +   ++ L+  L +  RLK+A+++F  +L  G  
Sbjct: 417 DGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYH 476

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            +    +VMI   C  G + E   +   +E  G + +  +     +++ L +K+ + +A 
Sbjct: 477 LNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFT--FETIIIALFKKDENDKAE 534

Query: 434 KLARFMLKK 442
           KL R M+ +
Sbjct: 535 KLLRQMIAR 543


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 187/410 (45%), Gaps = 24/410 (5%)

Query: 42  NPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMY---- 97
           NPN  E  L  +   L  + V  VL     +  ++ + FF WA  Q  Y H   +Y    
Sbjct: 147 NPN-FEGRLRHLLRSLKPSLVCAVLRS--QADERVALNFFYWADRQWRYSHHPLVYYTLL 203

Query: 98  -----NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVL 152
                 + C+ +R          V+      G  +S +    +     +A     A+ VL
Sbjct: 204 DVLSKTKLCQGAR---------RVLRLMTRRGIELSPEAFGCVMVSYSRAGKLRNALRVL 254

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
             M +  + P+  I N  I +  +   +  A   ++ M +  + PDI+TY S+IKG+C+ 
Sbjct: 255 TLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDL 314

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            R+EDA  L   +   GC  + V+Y  ++  +C+   +E+   L+ +M ++  +  P+ V
Sbjct: 315 NRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQD-SNLIPDQV 373

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TY ++I +    G   +AL  L   E  G   ++V  S ++  FC +G +DEA  L+  +
Sbjct: 374 TYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDM 433

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            +         Y+++V    R  R+ EA+K+  +M   G KP+ ++ + ++  LC  G+ 
Sbjct: 434 YSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKS 493

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LE   +    E+  +  + ++  + V++ G  R+    EA  L R M++K
Sbjct: 494 LEAREMINVSEEHWW--TPNAITYGVVMHGFRREGKLSEACDLTREMVEK 541



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 149/327 (45%), Gaps = 50/327 (15%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C M ++ Q+ ++I D V                 + ++  K   A++A+  L++  +   
Sbjct: 357 CLMEKMVQDSNLIPDQV-------------TYNTLIHMLSKHGHADDALAFLKEAEDKGF 403

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
             D + Y+ ++  FC+KG M  A  L+  M      PD++TY +++ GFC  GR+++A  
Sbjct: 404 HIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKK 463

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + + M +HGC  N V+Y+ALL+G+C  G    A E++   E+     +PN +TY  V+  
Sbjct: 464 MLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWW--TPNAITYGVVMHG 521

Query: 281 FCGKGMMKEALGILDRM---------------------------------EAL--GCAPN 305
           F  +G + EA  +   M                                 E L  GCA N
Sbjct: 522 FRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAIN 581

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V  +T+I GFC  G+++ A  +++ +           Y++L   L +  RL EA +L  
Sbjct: 582 VVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIV 641

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQV 392
           KML+ G+ P  +    +I   C  G+V
Sbjct: 642 KMLSKGLDPTPVTFRSVIHRYCQWGRV 668



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 167/345 (48%), Gaps = 13/345 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C+++RI+      ++++     +GC    V    V+  LC++ ++      + + + + +
Sbjct: 312 CDLNRIED----ALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSN 367

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L PD + YN +I +  + G    A   +K       + D + Y +++  FC  GR+++A 
Sbjct: 368 LIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAK 427

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M    C  ++V Y+A++DG CRLG ++ A ++L +M K G  C PN V+YT+++ 
Sbjct: 428 SLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHG--CKPNTVSYTALLN 485

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G   EA  +++  E     PN +T   ++ GF  EG L EA  L  ++V  G   
Sbjct: 486 GLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFP 545

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +    + L+  L + +++ EA+K   + L  G   + +  + +I   C  G +     + 
Sbjct: 546 TPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVL 605

Query: 400 EDIEKIGFLSSVDSD--IHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           ED+    +LS+   D   ++ L   L +K    EAA+L   ML K
Sbjct: 606 EDM----YLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSK 646



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 124/255 (48%), Gaps = 14/255 (5%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE-----LMKGMGLIDLYPDII 200
           +EA  + R+M E    P  +  N +I+  C+   ++ A +     L KG  +     +++
Sbjct: 529 SEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAI-----NVV 583

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            + ++I GFC  G +E A  + + M       + V Y+AL D + + G ++ A EL+ +M
Sbjct: 584 NFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKM 643

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G D +P  VT+ SVI  +C  G + + L +LDRM  +   P R   + +I+  C  G
Sbjct: 644 LSKGLDPTP--VTFRSVIHRYCQWGRVDDMLNLLDRM--VKRKPFRTIYNHVIEKLCDFG 699

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           NL+EA +L+ KV+   S         L+   ++      A K+  +M    + PD   C 
Sbjct: 700 NLEEAEKLLGKVLRTASKLDANTCHVLMESCLKKGVALSAYKVACQMFRRNLTPDLKLCE 759

Query: 381 VMIRELCLGGQVLEG 395
            + ++L L G ++E 
Sbjct: 760 KVTKKLVLDGNLVEA 774



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 12/228 (5%)

Query: 116 VVEA--YKEE----GCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           VVEA  Y EE    GC ++V     VI   C+   +   A+ VL  M   +  PD + Y 
Sbjct: 563 VVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDM-EAALSVLEDMYLSNKHPDAVTYT 621

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +     +KG +  A EL+  M    L P  +T+ S+I  +C  GR++D   L   M + 
Sbjct: 622 ALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRMVKR 681

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
                +  Y+ +++ +C  G++E A +LLG++ +       N  T   +++    KG+  
Sbjct: 682 KPFRTI--YNHVIEKLCDFGNLEEAEKLLGKVLRTASKLDAN--TCHVLMESCLKKGVAL 737

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
            A  +  +M      P+      + K   ++GNL EA +L+ + V  G
Sbjct: 738 SAYKVACQMFRRNLTPDLKLCEKVTKKLVLDGNLVEADKLMLRFVERG 785


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 136/303 (44%), Gaps = 38/303 (12%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           KE G V        + ++  K   A+EA+W L+   E   R D + Y+ ++   C++G M
Sbjct: 378 KEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRM 437

Query: 181 IAADELMKGM-GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
             A +L+  M       PD++TY +++ GFC  G ++ A  L ++M  HG   N V+Y+A
Sbjct: 438 SEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTA 497

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV---------------------- 277
           LL+G+CR G    A E++   E++    SPN +TY+ +                      
Sbjct: 498 LLNGLCRTGKSLEAREMMNMSEEQW--WSPNSITYSVLMHGLRKEGKLSEACDVVREMVL 555

Query: 278 -------------IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
                        +Q  C  G   EA   ++     GCA N V  +T+I GFC    LD 
Sbjct: 556 KGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDA 615

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  ++D +      +    Y++LV  L +  R+ EA +L  KML  G+ P  +    +I 
Sbjct: 616 ALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIH 675

Query: 385 ELC 387
             C
Sbjct: 676 RYC 678



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 177/376 (47%), Gaps = 5/376 (1%)

Query: 75  QMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV 134
           ++ ++FF WA  Q  YRH   +Y    E+    +       V+   K  G   + +    
Sbjct: 191 RVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLR 250

Query: 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194
           +     +A    +A+ VL  M    + P+ +I N  I +F     +  A   ++ M ++ 
Sbjct: 251 VMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVG 310

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           + P+++TY  MI+G+C+  R+E+A  L   M   GC  + V+Y  ++  +C+   +    
Sbjct: 311 IVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVR 370

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           +L+ +M KE G    + VTY ++I +        EAL  L   E  G   ++V  S ++ 
Sbjct: 371 DLMKKMAKEHG-LVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVH 429

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             C EG + EA  LI+++++ G        Y+++V    R   + +A+KL   M   G K
Sbjct: 430 ALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYK 489

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ ++ + ++  LC  G+ LE   +    E+  +  S +S  +SVL+ GL ++    EA 
Sbjct: 490 PNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWW--SPNSITYSVLMHGLRKEGKLSEAC 547

Query: 434 KLARFMLKKRIWLQGP 449
            + R M+ K  +  GP
Sbjct: 548 DVVREMVLKG-FFPGP 562


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 155/297 (52%), Gaps = 4/297 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L +M    L  + + Y +VI L C++G +  A  +++ M +  +  D   + +++ 
Sbjct: 304 AIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMS 363

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC  G L  A   F  M++ G AA+ V Y+AL++G+CR G ++ A  +L EME +G D 
Sbjct: 364 GFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDV 423

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             + VTYT +I  +C  G M EA  + ++M      PN VT + L  G C +G++  A +
Sbjct: 424 --DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANE 481

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ ++ + G   +   Y+SL+  L +   L++A +    M  +G+KPD    + +I  LC
Sbjct: 482 LLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALC 541

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
              ++     L +++   G   ++ +  ++VL+ G C         +L  +ML+K I
Sbjct: 542 QSKELDRAHSLLQEMLDKGIKPTIVT--YNVLMNGFCMSGRVEGGKRLLEWMLEKNI 596



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 141/272 (51%), Gaps = 3/272 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC++ +++ +A+ V+  M    +  D  ++  V+  FC KGD+ AA     
Sbjct: 321 VAYTSVIALLCDEGQVS-DAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFD 379

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    L  D +TY ++I G C AG L++A  + + M+  G   + V Y+ L+DG C++G
Sbjct: 380 EMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVG 439

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            M  A  +  +M ++    +PNVVTYT++    C +G +  A  +L  M + G   N  T
Sbjct: 440 KMTEAFLVHNKMVQK--RVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFT 497

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            ++LI G C  GNL++A + +  +   G       Y++++  L ++K L  A  L  +ML
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEML 557

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
             G+KP  +  +V++   C+ G+V  G  L E
Sbjct: 558 DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 156/316 (49%), Gaps = 5/316 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC    L  EA  VL++M +  L  D + Y  +I  +C+ G M  A  +  
Sbjct: 391 VTYTALINGLCRAGEL-KEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHN 449

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P+++TY ++  G C  G +  A  L   M   G   N+  Y++L++G+C+ G
Sbjct: 450 KMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAG 509

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           ++E+A+  + +M++ G    P+V TYT++I   C    +  A  +L  M   G  P  VT
Sbjct: 510 NLEQAMRTMIDMDEAG--LKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVT 567

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + L+ GFC+ G ++   +L++ ++      +   Y+SL+ +    K +K   +++  ML
Sbjct: 568 YNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGML 627

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           +  V P+    +++I+  C    + E    + ++ + GF  +  S  ++ L+  L +K  
Sbjct: 628 SQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASS--YNALIRLLNKKKK 685

Query: 429 SVEAAKLARFMLKKRI 444
             EA +L   M K+R+
Sbjct: 686 FTEARRLFEKMRKERL 701



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 137/265 (51%), Gaps = 7/265 (2%)

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           +Y  ++K  C AGR++DA  LF  M       ++V Y  ++ G C L  +E A++LL EM
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G + +P  V YTSVI + C +G + +A+ +++ M   G   +    +T++ GFC +G
Sbjct: 312 AARGLELNP--VAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKG 369

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           +L  A    D++   G  + G  Y++L+  L R   LKEAE++  +M   G+  D +  +
Sbjct: 370 DLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYT 429

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           V+I   C  G++ E F ++  + +     +V +  ++ L  GLC++     A +L   M 
Sbjct: 430 VLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT--YTALSDGLCKQGDVCAANELLHEMC 487

Query: 441 KKRIWLQGPYVDKIVEHLKKSGDEE 465
            K + L     + ++  L K+G+ E
Sbjct: 488 SKGLELNIFTYNSLINGLCKAGNLE 512



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 141/297 (47%), Gaps = 2/297 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++  +++G  V      V+ +   K     EA  V  KM +  + P+ + Y  +    C
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++GD+ AA+EL+  M    L  +I TY S+I G C AG LE A      M   G   ++ 
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY 531

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ ++  +C+   ++RA  LL EM  +G    P +VTY  ++  FC  G ++    +L+
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEMLDKG--IKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M      PN  T ++L+K +C+E N+    ++   +++   V +   Y+ L+    + +
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKAR 649

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
            +KEA    S+M+  G +    + + +IR L    +  E   L+E + K    +  D
Sbjct: 650 NMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPD 706



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 108/255 (42%), Gaps = 47/255 (18%)

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +CRL  ++ A++L  E+ ++      N  +Y  +++  C  G +K+A  + D M      
Sbjct: 233 LCRL-PLDEAVQLFQELPEK------NTCSYNILLKALCTAGRIKDAHQLFDEM---ASP 282

Query: 304 PNRVTISTLIKGFCV-----------------------------------EGNLDEAYQL 328
           P+ VT   ++ G+C                                    EG + +A ++
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRV 342

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
           ++ +V  G V     +++++    R   L  A   F +M   G+  DG+  + +I  LC 
Sbjct: 343 VEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCR 402

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
            G++ E   + +++E  G    VD+  ++VL+ G C+     EA  +   M++KR+    
Sbjct: 403 AGELKEAERVLQEMEDKGL--DVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNV 460

Query: 449 PYVDKIVEHLKKSGD 463
                + + L K GD
Sbjct: 461 VTYTALSDGLCKQGD 475



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
           W+L K    ++ P+T  YN++++ +C + +M +  E+ KGM   ++ P+  TY  +IKG 
Sbjct: 590 WMLEK----NIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGH 645

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C A  +++A      M   G      +Y+AL+  + +      A  L  +M KE     P
Sbjct: 646 CKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEP 705

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRM 297
           +V  Y   I +   +  ++  L + D +
Sbjct: 706 DV--YNFYIDLSFNEDNLESTLALCDEL 731


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 164/354 (46%), Gaps = 7/354 (1%)

Query: 115 DVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + +E Y+    EG   S+K    +     K R     M +L +M    LRP+   Y   I
Sbjct: 212 EALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICI 271

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           R+    G +  A  +MK M      PD++TY  +I   C A +L+DA  LF  MK     
Sbjct: 272 RVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHK 331

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            + V Y  LLD     G +++  ++  EME +G   +P+VVT+T ++   C  G + EA 
Sbjct: 332 PDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADG--YAPDVVTFTILVNALCKAGRINEAF 389

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +LD M   G  PN  T +TLI G      LD+A  L   + + G   +   Y  L+   
Sbjct: 390 DLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYH 449

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            ++    +A + F KM A G+ P+ +AC+  +  L   G++ E   ++ +++  G   + 
Sbjct: 450 GKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGL--AP 507

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           DS  +++++    +     EA KL   M K +       ++ +++ L K+G  E
Sbjct: 508 DSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVE 561



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 155/328 (47%), Gaps = 10/328 (3%)

Query: 118 EAYK------EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           EAY+      ++GC   V    V+ +    AR  ++AM +  KM     +PD + Y  ++
Sbjct: 282 EAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLL 341

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
             F + G +   +++   M      PD++T+  ++   C AGR+ +A  L   M++ G  
Sbjct: 342 DKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVL 401

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            NL  Y+ L+ G+ R   ++ AL+L   ME  G    P   TY  +I      G   +AL
Sbjct: 402 PNLHTYNTLISGLLRANRLDDALDLFSNMESLG--VEPTAYTYILLIDYHGKSGHPGKAL 459

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
              ++M+A G APN V  +  +      G L EA  + +++ + G       Y+ ++   
Sbjct: 460 ETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCY 519

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +  ++ EA KL S+M     +PD +  + +I  L   G+V E + ++  +E++    +V
Sbjct: 520 SKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTV 579

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            +  +++LL GL ++    +A +L   M
Sbjct: 580 VT--YNILLAGLGKEGQIQKAVQLFESM 605



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 140/278 (50%), Gaps = 6/278 (2%)

Query: 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165
           ++Q PS     +E  +E G V++      + +   ++    EA+ V R+M    L+P   
Sbjct: 175 LRQAPS----ALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLK 230

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            ++ ++    ++ ++     L++ M  + L P+I TY   I+     G++++A  + K M
Sbjct: 231 TFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRM 290

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
              GC  ++V Y+ L+D +C    ++ A+ L  +M+       P+ VTY +++  F   G
Sbjct: 291 DDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSH--KPDKVTYVTLLDKFSDCG 348

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            + +   I   MEA G AP+ VT + L+   C  G ++EA+ L+D +   G + +   Y+
Sbjct: 349 HLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYN 408

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +L+  L+R  RL +A  LFS M + GV+P      ++I
Sbjct: 409 TLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLI 446



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 136/293 (46%), Gaps = 2/293 (0%)

Query: 108  QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
             N  +  ++ E  K  GC         + +   K+   NE   +  +M     +P+TI Y
Sbjct: 804  HNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITY 863

Query: 168  NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
            N VI    +   +  A +L   +   D  P   T+  +I G   +GRL+DA  +F  M  
Sbjct: 864  NMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVH 923

Query: 228  HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            +GC  N   Y+ L++G  +LG ++ A E    M KEG    P++ +YT ++ I C  G +
Sbjct: 924  YGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEG--IRPDLKSYTILVDILCIAGRV 981

Query: 288  KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
             +AL   ++++  G  P+ V  + +I G       +EA  L  ++   G V     Y+SL
Sbjct: 982  DDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSL 1041

Query: 348  VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
            ++ L     ++EA K++ ++   G+KP+    + +IR   L G     + +Y+
Sbjct: 1042 ILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYK 1094



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 117/214 (54%), Gaps = 3/214 (1%)

Query: 134  VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            +I  L +  RL ++A  +   M  +  RP++ IYN ++  + + G +  A E  K M   
Sbjct: 901  LIDGLLKSGRL-DDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKE 959

Query: 194  DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             + PD+ +Y  ++   C AGR++DA   F+ +K+ G   +LVAY+ +++G+ R    E A
Sbjct: 960  GIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEA 1019

Query: 254  LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            L L  EM+  G    P++ TY S+I      GM++EA  I + ++ +G  PN  T + LI
Sbjct: 1020 LSLFHEMQNRG--IVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALI 1077

Query: 314  KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            +G+ + GN + AY +  K++ GG   + G ++ L
Sbjct: 1078 RGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 135/278 (48%), Gaps = 9/278 (3%)

Query: 170  VIRLFCE-KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I++ C+ K   +A +  +K    + + P +  Y  +I GF     +E A  LF+ MK  
Sbjct: 760  IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSA 819

Query: 229  GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
            GCA +   Y++L+D   + G +    +L  EM   G  C PN +TY  VI        + 
Sbjct: 820  GCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRG--CKPNTITYNMVISNLVKSNRLD 877

Query: 289  EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            +A+ +   + +   +P   T   LI G    G LD+A+++ D +V  G   +   Y+ LV
Sbjct: 878  KAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILV 937

Query: 349  VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
                +   +  A + F +M+  G++PD  + ++++  LC+ G+V +    +E +++ G  
Sbjct: 938  NGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAG-- 995

Query: 409  SSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
              +D D+  +++++ GL R   + EA  L   M  + I
Sbjct: 996  --LDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGI 1031



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 143/312 (45%), Gaps = 6/312 (1%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           + + N  C+  RI +      D+++  +++G + ++     + +   +A   ++A+ +  
Sbjct: 373 TILVNALCKAGRINE----AFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFS 428

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            M    + P    Y  +I    + G    A E  + M    + P+I+   + +      G
Sbjct: 429 NMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMG 488

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           RL +A  +F  +K  G A + V Y+ ++    ++G ++ A++LL EM K    C P+V+ 
Sbjct: 489 RLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKV--QCEPDVIV 546

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
             S+I      G ++EA  +  RME +  AP  VT + L+ G   EG + +A QL + + 
Sbjct: 547 INSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMN 606

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G   +   +++L+  L +   +  A K+F KM     +PD L  + +I       Q+ 
Sbjct: 607 GHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIK 666

Query: 394 EGFCLYEDIEKI 405
               L+  ++K+
Sbjct: 667 NAIWLFHQMKKL 678



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 134/284 (47%), Gaps = 10/284 (3%)

Query: 158 FDLRPDTIIYNNV------IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           FDL    II  NV       +    +G +  A   ++ M       +  +Y  +I     
Sbjct: 147 FDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQ 206

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
           +G  ++A  +++ M   G   +L  +SAL+    +  +++  + LL EME  G    PN+
Sbjct: 207 SGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMG--LRPNI 264

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
            TYT  I++    G + EA  I+ RM+  GC P+ VT + LI   C    LD+A  L  K
Sbjct: 265 YTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTK 324

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           + +         Y +L+ +      L + EK++++M A G  PD +  ++++  LC  G+
Sbjct: 325 MKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGR 384

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           + E F L + + K G L ++ +  ++ L+ GL R N   +A  L
Sbjct: 385 INEAFDLLDTMRKQGVLPNLHT--YNTLISGLLRANRLDDALDL 426



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 135/293 (46%), Gaps = 2/293 (0%)

Query: 131  MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
            ++ +I  LC+  + +      ++   E  ++P   +YN +I  F E  ++  A  L + M
Sbjct: 757  LIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEM 816

Query: 191  GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
                  PD  TY S+I     +G++ +   L+  M   GC  N + Y+ ++  + +   +
Sbjct: 817  KSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRL 876

Query: 251  ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
            ++A++L   +    GD SP   T+  +I      G + +A  + D M   GC PN    +
Sbjct: 877  DKAMDLYYNLVS--GDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYN 934

Query: 311  TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
             L+ G+   G++D A +   ++V  G       Y+ LV  L    R+ +A   F K+  +
Sbjct: 935  ILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQA 994

Query: 371  GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
            G+ PD +A ++MI  L    +  E   L+ +++  G +  + +    +L LG+
Sbjct: 995  GLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGI 1047



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR 161
           EM R+ +  ++  ++  +      V    MMK       K    +EA+ +L +M +    
Sbjct: 486 EMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCY----SKVGQVDEAIKLLSEMSKVQCE 541

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD I+ N++I    + G +  A ++   M  ++L P ++TY  ++ G    G+++ A  L
Sbjct: 542 PDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQL 601

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F+ M  HGC+ N + ++ LLD +C+   ++ AL++  +M     +C P+V+T+ ++I  F
Sbjct: 602 FESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTM--NCRPDVLTFNTIIHGF 659

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
             +  +K A+ +  +M+ L   P+ VT+ TL+ G    G +++A+++ +
Sbjct: 660 IKQNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSGQIEDAFRITE 707



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 60/123 (48%)

Query: 118  EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177
            E  K+ G    +    ++ N   +++   EA+ +  +M    + PD   YN++I      
Sbjct: 989  EKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIV 1048

Query: 178  GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
            G +  A ++ + +  I L P++ TY ++I+G+  +G  E A G++K M   GC  N   +
Sbjct: 1049 GMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTF 1108

Query: 238  SAL 240
            + L
Sbjct: 1109 AQL 1111


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 155/297 (52%), Gaps = 4/297 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L +M    L  + + Y +VI L C++G +  A  +++ M +  +  D   + +++ 
Sbjct: 304 AIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMS 363

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC  G L  A   F  M++ G AA+ V Y+AL++G+CR G ++ A  +L EME +G D 
Sbjct: 364 GFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDV 423

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             + VTYT +I  +C  G M EA  + ++M      PN VT + L  G C +G++  A +
Sbjct: 424 --DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANE 481

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ ++ + G   +   Y+SL+  L +   L++A +    M  +G+KPD    + +I  LC
Sbjct: 482 LLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALC 541

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
              ++     L +++   G   ++ +  ++VL+ G C         +L  +ML+K I
Sbjct: 542 QSKELDRAHSLLQEMLDKGIKPTIVT--YNVLMNGFCMSGRVEGGKRLLEWMLEKNI 596



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 141/272 (51%), Gaps = 3/272 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC++ +++ +A+ V+  M    +  D  ++  V+  FC KGD+ AA     
Sbjct: 321 VAYTSVIALLCDEGQVS-DAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFD 379

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    L  D +TY ++I G C AG L++A  + + M+  G   + V Y+ L+DG C++G
Sbjct: 380 EMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVG 439

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            M  A  +  +M ++    +PNVVTYT++    C +G +  A  +L  M + G   N  T
Sbjct: 440 KMTEAFLVHNKMVQK--RVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFT 497

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            ++LI G C  GNL++A + +  +   G       Y++++  L ++K L  A  L  +ML
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEML 557

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
             G+KP  +  +V++   C+ G+V  G  L E
Sbjct: 558 DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 155/316 (49%), Gaps = 5/316 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC    L  EA  VL++M +  L  D + Y  +I  +C+ G M  A  +  
Sbjct: 391 VTYTALINGLCRAGEL-KEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHN 449

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P+++TY ++  G C  G +  A  L   M   G   N+  Y++L++G+C+ G
Sbjct: 450 KMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAG 509

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           ++E+A+  + +M++ G    P+V TYT++I   C    +  A  +L  M   G  P  VT
Sbjct: 510 NLEQAMRTMIDMDEAG--LKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVT 567

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + L+ GFC+ G ++   +L++ ++      +   Y+SL+ +    K +K   +++  ML
Sbjct: 568 YNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGML 627

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           +  V P+    +++I+  C    + E    + ++ + GF  +  S  ++ L+  L +K  
Sbjct: 628 SQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASS--YNALIRLLNKKKK 685

Query: 429 SVEAAKLARFMLKKRI 444
             EA +L   M K R+
Sbjct: 686 FTEARRLFEKMRKDRL 701



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 137/265 (51%), Gaps = 7/265 (2%)

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           +Y  ++K  C AGR++DA  LF  M       ++V Y  ++ G C L  +E A++LL EM
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G + +P  V YTSVI + C +G + +A+ +++ M   G   +    +T++ GFC +G
Sbjct: 312 AARGLELNP--VAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKG 369

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           +L  A    D++   G  + G  Y++L+  L R   LKEAE++  +M   G+  D +  +
Sbjct: 370 DLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYT 429

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           V+I   C  G++ E F ++  + +     +V +  ++ L  GLC++     A +L   M 
Sbjct: 430 VLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT--YTALSDGLCKQGDVCAANELLHEMC 487

Query: 441 KKRIWLQGPYVDKIVEHLKKSGDEE 465
            K + L     + ++  L K+G+ E
Sbjct: 488 SKGLELNIFTYNSLINGLCKAGNLE 512



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 141/297 (47%), Gaps = 2/297 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++  +++G  V      V+ +   K     EA  V  KM +  + P+ + Y  +    C
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++GD+ AA+EL+  M    L  +I TY S+I G C AG LE A      M   G   ++ 
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY 531

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ ++  +C+   ++RA  LL EM  +G    P +VTY  ++  FC  G ++    +L+
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEMLDKG--IKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M      PN  T ++L+K +C+E N+    ++   +++   V +   Y+ L+    + +
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKAR 649

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
            +KEA    S+M+  G +    + + +IR L    +  E   L+E + K    +  D
Sbjct: 650 NMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPD 706



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 108/255 (42%), Gaps = 47/255 (18%)

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +CRL  ++ A++L  E+ ++      N  +Y  +++  C  G +K+A  + D M      
Sbjct: 233 LCRL-PLDEAVQLFQELPEK------NTCSYNILLKALCTAGRIKDAHQLFDEM---ASP 282

Query: 304 PNRVTISTLIKGFCV-----------------------------------EGNLDEAYQL 328
           P+ VT   ++ G+C                                    EG + +A ++
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRV 342

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
           ++ +V  G V     +++++    R   L  A   F +M   G+  DG+  + +I  LC 
Sbjct: 343 VEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCR 402

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
            G++ E   + +++E  G    VD+  ++VL+ G C+     EA  +   M++KR+    
Sbjct: 403 AGELKEAERVLQEMEDKGL--DVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNV 460

Query: 449 PYVDKIVEHLKKSGD 463
                + + L K GD
Sbjct: 461 VTYTALSDGLCKQGD 475



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
           W+L K    ++ P+T  YN++++ +C + +M +  E+ KGM   ++ P+  TY  +IKG 
Sbjct: 590 WMLEK----NIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGH 645

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C A  +++A      M   G      +Y+AL+  + +      A  L  +M K+     P
Sbjct: 646 CKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEP 705

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRM 297
           +V  Y   I +   +  ++  L + D +
Sbjct: 706 DV--YNFYIDLSFNEDNLESTLALCDEL 731


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 155/297 (52%), Gaps = 4/297 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L +M    L  + + Y +VI L C++G +  A  +++ M +  +  D   + +++ 
Sbjct: 304 AIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMS 363

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC  G L  A   F  M++ G AA+ V Y+AL++G+CR G ++ A  +L EME +G D 
Sbjct: 364 GFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDV 423

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             + VTYT +I  +C  G M EA  + ++M      PN VT + L  G C +G++  A +
Sbjct: 424 --DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANE 481

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ ++ + G   +   Y+SL+  L +   L++A +    M  +G+KPD    + +I  LC
Sbjct: 482 LLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALC 541

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
              ++     L +++   G   ++ +  ++VL+ G C         +L  +ML+K I
Sbjct: 542 QSKELDRAHSLLQEMLDKGIKPTIVT--YNVLMNGFCMSGRVEGGKRLLEWMLEKNI 596



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 141/272 (51%), Gaps = 3/272 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC++ +++ +A+ V+  M    +  D  ++  V+  FC KGD+ AA     
Sbjct: 321 VAYTSVIALLCDEGQVS-DAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFD 379

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    L  D +TY ++I G C AG L++A  + + M+  G   + V Y+ L+DG C++G
Sbjct: 380 EMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVG 439

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            M  A  +  +M ++    +PNVVTYT++    C +G +  A  +L  M + G   N  T
Sbjct: 440 KMTEAFLVHNKMVQK--RVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFT 497

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            ++LI G C  GNL++A + +  +   G       Y++++  L ++K L  A  L  +ML
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEML 557

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
             G+KP  +  +V++   C+ G+V  G  L E
Sbjct: 558 DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 156/316 (49%), Gaps = 5/316 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC    L  EA  VL++M +  L  D + Y  +I  +C+ G M  A  +  
Sbjct: 391 VTYTALINGLCRAGEL-KEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHN 449

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + P+++TY ++  G C  G +  A  L   M   G   N+  Y++L++G+C+ G
Sbjct: 450 KMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAG 509

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
           ++E+A+  + +M++ G    P+V TYT++I   C    +  A  +L  M   G  P  VT
Sbjct: 510 NLEQAMRTMIDMDEAG--LKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVT 567

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + L+ GFC+ G ++   +L++ ++      +   Y+SL+ +    K +K   +++  ML
Sbjct: 568 YNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGML 627

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           +  V P+    +++I+  C    + E    + ++ + GF  +  S  ++ L+  L +K  
Sbjct: 628 SQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASS--YNALIRLLNKKKK 685

Query: 429 SVEAAKLARFMLKKRI 444
             EA +L   M K+R+
Sbjct: 686 FTEARRLFEKMRKERL 701



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 137/265 (51%), Gaps = 7/265 (2%)

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           +Y  ++K  C AGR++DA  LF  M       ++V Y  ++ G C L  +E A++LL EM
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
              G + +P  V YTSVI + C +G + +A+ +++ M   G   +    +T++ GFC +G
Sbjct: 312 AARGLELNP--VAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKG 369

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           +L  A    D++   G  + G  Y++L+  L R   LKEAE++  +M   G+  D +  +
Sbjct: 370 DLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYT 429

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           V+I   C  G++ E F ++  + +     +V +  ++ L  GLC++     A +L   M 
Sbjct: 430 VLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT--YTALSDGLCKQGDVCAANELLHEMC 487

Query: 441 KKRIWLQGPYVDKIVEHLKKSGDEE 465
            K + L     + ++  L K+G+ E
Sbjct: 488 SKGLELNIFTYNSLINGLCKAGNLE 512



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 141/297 (47%), Gaps = 2/297 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V++  +++G  V      V+ +   K     EA  V  KM +  + P+ + Y  +    C
Sbjct: 412 VLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLC 471

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++GD+ AA+EL+  M    L  +I TY S+I G C AG LE A      M   G   ++ 
Sbjct: 472 KQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVY 531

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ ++  +C+   ++RA  LL EM  +G    P +VTY  ++  FC  G ++    +L+
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEMLDKG--IKPTIVTYNVLMNGFCMSGRVEGGKRLLE 589

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M      PN  T ++L+K +C+E N+    ++   +++   V +   Y+ L+    + +
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKAR 649

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
            +KEA    S+M+  G +    + + +IR L    +  E   L+E + K    +  D
Sbjct: 650 NMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPD 706



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 108/255 (42%), Gaps = 47/255 (18%)

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +CRL  ++ A++L  E+ ++      N  +Y  +++  C  G +K+A  + D M      
Sbjct: 233 LCRL-PLDEAVQLFQELPEK------NTCSYNILLKALCTAGRIKDAHQLFDEM---ASP 282

Query: 304 PNRVTISTLIKGFCV-----------------------------------EGNLDEAYQL 328
           P+ VT   ++ G+C                                    EG + +A ++
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRV 342

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
           ++ +V  G V     +++++    R   L  A   F +M   G+  DG+  + +I  LC 
Sbjct: 343 VEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCR 402

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
            G++ E   + +++E  G    VD+  ++VL+ G C+     EA  +   M++KR+    
Sbjct: 403 AGELKEAERVLQEMEDKGL--DVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNV 460

Query: 449 PYVDKIVEHLKKSGD 463
                + + L K GD
Sbjct: 461 VTYTALSDGLCKQGD 475



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
           W+L K    ++ P+T  YN++++ +C + +M +  E+ KGM   ++ P+  TY  +IKG 
Sbjct: 590 WMLEK----NIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGH 645

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C A  +++A      M   G      +Y+AL+  + +      A  L  +M KE     P
Sbjct: 646 CKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEP 705

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRM 297
           +V  Y   I +   +  ++  L + D +
Sbjct: 706 DV--YNFYIDLSFNEDNLESTLALCDEL 731


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 205/434 (47%), Gaps = 19/434 (4%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMS 104
           N+E  L  +K +L    +++VL R F    +   RFF WAA +  + H S  YN    + 
Sbjct: 156 NMEAVLDEMKVELSHDLIVKVLER-FRHARKPAFRFFCWAAEKQGFAHDSRTYNSMMSIL 214

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR--P 162
              +    ++ V+E    +G +++++   +       A+   +A+ +   M ++  +   
Sbjct: 215 AKTRQFETMVSVLEEMGTKG-LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGV 273

Query: 163 DTI--IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +TI  + +++ R    K   +  D+L +        P+++TY  ++ G+C    L +A  
Sbjct: 274 ETINCLLDSLGRAKLGKEAQVLFDKLKE-----RFTPNMMTYTVLLNGWCRVRNLIEAAR 328

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           ++  M   G   ++VA++ +L+G+ R      A++L   M K  G C PNV +YT +I+ 
Sbjct: 329 IWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVM-KSKGPC-PNVRSYTIMIRD 386

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC +  M+ A+   D M   G  P+    + LI GF  +  LD  Y+L+ ++   G    
Sbjct: 387 FCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPD 446

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
           G  Y++L+  +   K  + A ++++KM+ + ++P     +++++   +      G  +++
Sbjct: 447 GKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGSAVWD 506

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD--KIVEHL 458
           ++ K G     D + ++VL+ GL  +  S EA +    ML K   ++ P +D  K     
Sbjct: 507 EMIKKGICP--DDNSYTVLIRGLIGEGKSREACRYLEEMLDK--GMKTPLIDYNKFAADF 562

Query: 459 KKSGDEELITNLPK 472
            K G  E+   L +
Sbjct: 563 HKGGQPEIFEELAQ 576


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 141/288 (48%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +VI  LC  +R+ N A ++ ++M    + PD   Y  +I  F + G +  A   +  M  
Sbjct: 494 EVIGFLCNASRVEN-AFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVR 552

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P ++TY ++I  +  A ++  A  LF++M   GC  N++ Y+AL+DG C+ G++E+
Sbjct: 553 DGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEK 612

Query: 253 ALELLGEME--------------KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A ++   M               K      PNVVTY +++   C    +K+A  +L+ M 
Sbjct: 613 ACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMF 672

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             GC PN +    LI GFC    LDEA ++  K+V  G   +   YSSL+  L + KRL 
Sbjct: 673 VDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLD 732

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
              K+ SKML +   P+ +  + MI  L    +  E + L   +E+ G
Sbjct: 733 LVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKG 780



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 150/307 (48%), Gaps = 18/307 (5%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  +V     + +   KA+  + A  +   M      P+ I Y  +I  +C+ G++  
Sbjct: 553 DGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEK 612

Query: 183 ADEL---MKG---MGLIDLY----------PDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           A ++   M+G   +  +D+Y          P+++TY +++ G C A +++DA  L + M 
Sbjct: 613 ACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMF 672

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             GC  N + Y AL+DG C+   ++ A E+  +M + G +  PNV TY+S+I        
Sbjct: 673 VDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYN--PNVYTYSSLIDRLFKDKR 730

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +   L +L +M    CAPN V  + +I G       DEAY+L+  +   G   +   Y++
Sbjct: 731 LDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTA 790

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++    +  ++ +  +LF +M + G  P+ +  +V+I   C  G + E + L E++++  
Sbjct: 791 MIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTY 850

Query: 407 FLSSVDS 413
           +   V S
Sbjct: 851 WPKHVSS 857



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 158/366 (43%), Gaps = 31/366 (8%)

Query: 93  SSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
           ++ +YN+     CE S  ++     +D +   +   C+ +V+  +++   C   +     
Sbjct: 307 NTILYNKMISGLCEASFFEE----AMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRC 362

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             +L  M      P   I+N+++  +C+  D   A +L+K M   +  P  + Y  +I  
Sbjct: 363 KRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGS 422

Query: 209 FCNAGRL------EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            C+ G L      E A   +  M   G   N V   +    +C  G  E+A +++ EM  
Sbjct: 423 ICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMM- 481

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    P+  TY+ VI   C    ++ A  +   M+  G  P+  T + LI  F   G +
Sbjct: 482 -GNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGII 540

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            +A+  +D++V  G   +   Y++L+   ++ K++  A +LF  M+A G  P+ +  + +
Sbjct: 541 KQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTAL 600

Query: 383 IRELCLGGQVLEGFCLY------EDIEKIGFLSSVDSDI--------HSVLLLGLCRKNH 428
           I   C  G + +   +Y       DI  +     + +++        +  L+ GLC K H
Sbjct: 601 IDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLC-KAH 659

Query: 429 SVEAAK 434
            V+ A+
Sbjct: 660 KVKDAR 665



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 6/227 (2%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           VL KM E    P+ +IY  +I    +      A +LM  M      P+++TY +MI GF 
Sbjct: 737 VLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFG 796

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
            AG+++    LF+ M   GCA N V Y+ L++  C  G ++ A  LL EM++       +
Sbjct: 797 KAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYW--PKH 854

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           V +Y  VI+ +  + ++  +LG+L+ +E  G AP  +    LI  F   G L+ A +L  
Sbjct: 855 VSSYCKVIEGYKREFIL--SLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHK 912

Query: 331 KVVAG--GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +V++      +    Y+SL+       ++  A +LF  M+  GV PD
Sbjct: 913 EVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPD 959



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 150/361 (41%), Gaps = 46/361 (12%)

Query: 47  EKT---LATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM 103
           EKT   L   + KL+   V+E+L   F    ++ ++FF+WA  Q  Y H+  +Y    ++
Sbjct: 123 EKTHIVLRQFRQKLNPDLVVEILS--FLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDV 180

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
                   +  + +   + +   V  K++ V+   C +  L N A+  L ++ +F  +P 
Sbjct: 181 FERGSYDRVPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPT 240

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
            + YN                                   ++++ F  A +L+ A  + +
Sbjct: 241 RMTYN-----------------------------------ALVQVFLRADKLDTAQLVHR 265

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M   G + +          +C++G    AL L+   EKE  D  PN + Y  +I   C 
Sbjct: 266 EMSELGLSMDEFTLGFFAQALCKVGKWREALSLI---EKE--DFVPNTILYNKMISGLCE 320

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
               +EA+  L+RM +  C PN  T   L+ G   +  L    +++  ++A G   S   
Sbjct: 321 ASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTI 380

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           ++SLV    ++     A KL  KM     KP  +  +++I  +C GG+ L G   +E  E
Sbjct: 381 FNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGE-LPGPVTFELAE 439

Query: 404 K 404
           K
Sbjct: 440 K 440



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 129/280 (46%), Gaps = 6/280 (2%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           ++  Y  + + Y+   +     +   +++ V+    E  C  ++ +   + +   K    
Sbjct: 707 VEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKT 766

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA  ++  M E   +P+ + Y  +I  F + G +    EL + MG     P+ +TY  +
Sbjct: 767 DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVL 826

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I   C  G L++A  L + MK+     ++ +Y  +++G  R      +L LL E+EK G 
Sbjct: 827 INHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKR--EFILSLGLLEEVEKNGS 884

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRM--EALGCAPNRVTISTLIKGFCVEGNLD 323
             +P ++ Y  +I  F   G ++ AL +   +   ++  A  +   ++LI  F     + 
Sbjct: 885 --APIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIG 942

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
            A++L   ++  G +   G +  L++ L+R +R +EA +L
Sbjct: 943 HAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQL 982


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 152/293 (51%), Gaps = 5/293 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  +  +M E  L P   IY  ++ ++ +   + AA  L++ M      P + TY  +IK
Sbjct: 249 AFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIK 308

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G    GR++DA  LF  M + GC  ++V  + L++ + R G +E AL+L G+M  +   C
Sbjct: 309 GLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKM--DSLQC 366

Query: 268 SPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           +PNVVTY +VI+ IF  K    EA    ++M+A G AP+  T + LI GFC    +++A 
Sbjct: 367 APNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKAL 426

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L++++   G       Y SL+  L R KR + A +LF ++  +  +      +VMI+  
Sbjct: 427 LLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHF 486

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
              G++ +   L+ +++K+G   S D   ++ L+ G+ R     EA  L R M
Sbjct: 487 GNCGRLSDAVDLFCEMKKLG--CSPDVYTYNALMSGMIRAGMIDEAHSLMRNM 537



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 182/398 (45%), Gaps = 16/398 (4%)

Query: 18  NSKIFALHFTTASPAERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQ 75
           N K+     +  +  ERF   L+  K  ++ EK +  +K K+D   V +VL      + +
Sbjct: 48  NRKVLRRDPSVRTLDERFIRILKIFKWGSDAEKAIEVLKLKVDHRLVHQVLD--IDVEIR 105

Query: 76  MGIRFFIWAALQSSYRHSSFMYN---RACEMS-RIKQNPSIIIDVVEAYKEEGCVVSVKM 131
             I+FF WA  +  ++H S  Y    R  E S  + +    I D++ +     C V    
Sbjct: 106 AKIQFFKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRS----PCSVGPAE 161

Query: 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM- 190
              I  +  KA++ N+A+ V  ++      P   +YN +I +   +G      EL   + 
Sbjct: 162 WSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEIC 221

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
              +  PD ITY ++I  F    R + A  LF  MK +G       Y+ +L    +L  +
Sbjct: 222 SEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKV 281

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E AL L+ EM+ +G  C+P V TYT +I+     G + +A  +   M   GC P+ V I+
Sbjct: 282 EAALRLVEEMKGKG--CAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLIN 339

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR-LKEAEKLFSKMLA 369
            LI      G L++A +L  K+ +     +   Y++++  +  +K    EA   F KM A
Sbjct: 340 NLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKA 399

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +G+ P     +++I   C   +V +   L E++++ GF
Sbjct: 400 NGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGF 437



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 140/300 (46%), Gaps = 5/300 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR-LFCEKGDM 180
           ++GC   V ++  + N+  +A    +A+ +  KM      P+ + YN VI+ +F  K   
Sbjct: 328 KDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPA 387

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A    + M    + P   TY  +I GFC   R+E A  L + M   G      AY +L
Sbjct: 388 SEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSL 447

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +D + R    E A EL  E+++  G  S  V  Y  +I+ F   G + +A+ +   M+ L
Sbjct: 448 IDSLGRAKRYEAANELFQELKENCGRSSARV--YAVMIKHFGNCGRLSDAVDLFCEMKKL 505

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GC+P+  T + L+ G    G +DEA+ L+  +   G       ++ ++  L +T   K A
Sbjct: 506 GCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRA 565

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            ++F+KM  S + PD ++ + ++  L   G       L  +++  GF    DS  +S +L
Sbjct: 566 IEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGF--EYDSITYSSIL 623



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 88/164 (53%), Gaps = 5/164 (3%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           R    +Y  +I+ F   G +  A +L   M  +   PD+ TY +++ G   AG +++A  
Sbjct: 473 RSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHS 532

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L + M+ +GC  ++ +++ +L+G+ + G  +RA+E+  +M++   +  P+ V+Y +++  
Sbjct: 533 LMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKE--SEIMPDAVSYNTILSC 590

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               GM + A  ++  M+  G   + +T S++++     G +DE
Sbjct: 591 LSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAV---GKVDE 631


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 162/336 (48%), Gaps = 9/336 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +VE   +  C  +V    VI ++CE   +  E     R++ E    P   +YN +I   C
Sbjct: 203 LVEMSNKGCCPNAVSYTTVISSMCEVG-MVKEG----RQLAE-RFEPVVSVYNALINGLC 256

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           ++ D     ELM  M    + P++I+Y ++I    N+G++E A  L   M + GC  N+ 
Sbjct: 257 KERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIH 316

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
             S+L+ G    G+   AL++  +M + G    PNVV Y +++Q FC  G + +A+ +  
Sbjct: 317 TLSSLVKGCFVRGTTFDALDMWNQMIR-GFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFL 375

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            ME +GC+PN  T  +LI GF   G+L+ A  + +K++  G   +   Y+S+V  L R  
Sbjct: 376 HMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHS 435

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           + KEAE L   M      P     +  I+ LC  G++     ++  +E+  +    +   
Sbjct: 436 KFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQ-QYRCPPNIVT 494

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPY 450
           ++ LL GL + N   EA  L R +  + + W    Y
Sbjct: 495 YNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTY 530



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/466 (22%), Positives = 185/466 (39%), Gaps = 83/466 (17%)

Query: 41  KNPNNIE-KTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNR 99
           ++PN+ E K  A +K     +CV   LH            FF   A  + ++H+   +  
Sbjct: 33  ESPNHAEIKESAVLKRLRQESCVPLALH------------FFKSIANSNLFKHTPLTFEV 80

Query: 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
                 +      +  +++  K +G   S  +   + ++  +  LA  A+ +  ++ EF 
Sbjct: 81  MIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFG 140

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             P   IYN+V+     +  +     + + M      P++ TY  ++K  C   +++ A 
Sbjct: 141 CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAK 200

Query: 220 GLFKVMKRHGCAANLVAYS------------------------------ALLDGICRLGS 249
            L   M   GC  N V+Y+                              AL++G+C+   
Sbjct: 201 KLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAERFEPVVSVYNALINGLCKERD 260

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
            +  +EL+ EM ++G   SPNV++Y+++I      G ++ A  +L +M   GC PN  T+
Sbjct: 261 YKGGVELMSEMVEKG--ISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTL 318

Query: 310 S------------------------------------TLIKGFCVEGNLDEAYQLIDKVV 333
           S                                    TL++GFC  GN+D+A  +   + 
Sbjct: 319 SSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHME 378

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G   +   Y SL+    +   L+ A  +++KML SG  P+ +  + M+  LC   +  
Sbjct: 379 EIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFK 438

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           E   L E + K     SV +   +  + GLC       A K+ R M
Sbjct: 439 EAESLIEIMSKENCAPSVPT--FNAFIKGLCDAGRLDWAEKVFRQM 482



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 125/258 (48%), Gaps = 5/258 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+ V   M E    P+   Y ++I  F ++G +  A  +   M      P+++ Y SM
Sbjct: 368 DKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSM 427

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           ++  C   + ++A  L ++M +  CA ++  ++A + G+C  G ++ A ++  +ME++  
Sbjct: 428 VEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQY- 486

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C PN+VTY  ++        ++EA G+   +   G   +  T +TL+ G C  G    A
Sbjct: 487 RCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLPGIA 546

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG---VKPDGLACSVM 382
            QL+ K++  G        + +++   +  + + A ++   +++ G    +PD ++ + +
Sbjct: 547 LQLVGKMMVNGKSPDEITMNMIILAYCKQGKAERAVQMLD-LVSCGRRKWRPDVISYTNV 605

Query: 383 IRELCLGGQVLEGFCLYE 400
           I  LC      +G  L+E
Sbjct: 606 IWGLCRSNCREDGVILFE 623



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 12/203 (5%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLY 196
           LC  ++   EA  ++  M + +  P    +N  I+  C+ G +  A+++ + M       
Sbjct: 431 LCRHSKF-KEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCP 489

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+I+TY  ++ G   A R+E+A GL + +   G   +   Y+ LL G C  G    AL+L
Sbjct: 490 PNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQL 549

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA-----PNRVTIST 311
           +G+M   G   SP+ +T   +I  +C +G  + A+ +LD    + C      P+ ++ + 
Sbjct: 550 VGKMMVNGK--SPDEITMNMIILAYCKQGKAERAVQMLD---LVSCGRRKWRPDVISYTN 604

Query: 312 LIKGFCVEGNLDEAYQLIDKVVA 334
           +I G C     ++   L +++++
Sbjct: 605 VIWGLCRSNCREDGVILFERMIS 627



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 101/223 (45%), Gaps = 9/223 (4%)

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G ++    LL +M+ +G  CS ++  + SVI ++   G+ + A+ +  R++  GC P+  
Sbjct: 89  GQVDSVQYLLQQMKLQGFHCSEDL--FISVISVYRQVGLAERAVEMFYRIKEFGCDPSVK 146

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
             + ++     E  +   Y +   +   G   +   Y+ L+  L +  ++  A+KL  +M
Sbjct: 147 IYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEM 206

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G  P+ ++ + +I  +C  G V EG  L E  E +         +++ L+ GLC++ 
Sbjct: 207 SNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAERFEPV-------VSVYNALINGLCKER 259

Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
                 +L   M++K I         ++  L  SG  EL  +L
Sbjct: 260 DYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSL 302


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 175/368 (47%), Gaps = 44/368 (11%)

Query: 134 VIFNLC----EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           V++N+C     KA   + A     +M    L  D + Y ++I + C+   +  A EL + 
Sbjct: 271 VLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEH 330

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M      P    Y +MI G+  AG+ EDA  L +  +R GC  ++V+Y+ +L  + R G 
Sbjct: 331 MDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQ 390

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-------- 301
           ++ AL+   EM+K   D  PN+ TY  +I + C  G ++ AL + D M+  G        
Sbjct: 391 VDEALKKFEEMKK---DAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITV 447

Query: 302 ---------------------------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
                                      C P+ VT  +LI+G    G +DEAY+L ++++ 
Sbjct: 448 NIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLD 507

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
              + +   Y+SL+    +  R ++  K++++ML  G  PD L  +  +  +   G++ +
Sbjct: 508 ANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEK 567

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           G  L+++I+ +GF+   D+  +++L+ GL +   + EA +L   M ++   L     + +
Sbjct: 568 GRALFQEIKNLGFIP--DARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625

Query: 455 VEHLKKSG 462
           ++   KSG
Sbjct: 626 IDGFCKSG 633



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 160/331 (48%), Gaps = 8/331 (2%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           R+ +   +   +++A +    VV   +++  F    K     +   +  +M      PD 
Sbjct: 494 RVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRK----EDGHKIYNEMLRLGCSPDL 549

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           ++ N  +    + G++     L + +  +   PD  +Y  +I G   AG   +A  LF  
Sbjct: 550 LLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYT 609

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           MK  GC  +  AY+ ++DG C+ G + +A +LL EM+ +G +  P VVTY SVI      
Sbjct: 610 MKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHE--PTVVTYGSVIDGLAKI 667

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             + EA  + +  ++ G   N V  S+LI GF   G +DEAY ++++++  G   +   +
Sbjct: 668 DRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTW 727

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + L+  LV+ + + EA   F  M      P+ +  S++I  LC   +  + F  +++++K
Sbjct: 728 NCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQK 787

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            GF  +V +  ++ ++ GL +  + VEA  L
Sbjct: 788 QGFKPNVFT--YTTMISGLAKAGNIVEADTL 816



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 135/281 (48%), Gaps = 2/281 (0%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K  G +   +   ++ +   KA  A+EA  +   M E     DT  YN VI  FC+ G +
Sbjct: 576 KNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKV 635

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A +L++ M      P ++TY S+I G     RL++A  LF+  K  G   N+V YS+L
Sbjct: 636 NKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSL 695

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG  ++G ++ A  ++ E+ ++G   +PNV T+  ++        + EAL     M+ L
Sbjct: 696 IDGFGKVGRIDEAYLIMEELMQKG--LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDL 753

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
            C PN +T S LI G C     ++A+    ++   G   +   Y++++  L +   + EA
Sbjct: 754 KCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEA 813

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
           + LF K    G   D    + +I  L    +  + + L+E+
Sbjct: 814 DTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEE 854



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 145/296 (48%), Gaps = 2/296 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V +A K+ G   +V  + ++ +   KA+  ++A  +   +     RPD + Y ++I    
Sbjct: 431 VRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLG 490

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G +  A +L + M   +  P+ + Y S+I+ F   GR ED   ++  M R GC+ +L+
Sbjct: 491 RHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLL 550

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
             +  +D + + G +E+   L  E++  G    P+  +YT +I      G   EA  +  
Sbjct: 551 LLNTYMDCVFKAGEIEKGRALFQEIKNLG--FIPDARSYTILIHGLVKAGFAHEAYELFY 608

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+  GC  +    +T+I GFC  G +++AYQL++++   G   +   Y S++  L +  
Sbjct: 609 TMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKID 668

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           RL EA  LF +  + G++ + +  S +I      G++ E + + E++ + G   +V
Sbjct: 669 RLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNV 724



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 128/278 (46%), Gaps = 4/278 (1%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN+++ +          +++++ M +    P   T + ++  F  + +L +A    + M+
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMR 192

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           +        AY+ L+  +      +  L L  +M++ G   + NV  +T++I++F  +G 
Sbjct: 193 KLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELG--YAVNVHLFTTLIRVFAREGR 250

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +  AL +LD M++    P+ V  +  I  F   G +D A++   ++ A G V     Y+S
Sbjct: 251 VDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTS 310

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++  L +  RL EA +LF  M  +   P   A + MI    + G+  + + L E   + G
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG 370

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            + SV S  ++ +L  L RK    EA K    M K  I
Sbjct: 371 CIPSVVS--YNCILSCLGRKGQVDEALKKFEEMKKDAI 406


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 140/275 (50%), Gaps = 4/275 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP    YN ++  +   G +     L   M    + PD+ TY  +I 
Sbjct: 161 AQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLIN 220

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G      ++D   LF  M   G   N V ++ L+DG C+ G ++ A+E+  +M  +    
Sbjct: 221 GLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQX--L 278

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+ +TY ++    C KG + +A G++D M   G  P++ T +TLI G C EG+LD A++
Sbjct: 279 XPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFE 338

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
              +++          Y++L+  L +  R  +AEK+  +ML+ G+KPD    +++I E C
Sbjct: 339 HRKRMIQENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDXGTYTMIINEFC 398

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
             G V +G    +++++ G +  V +  ++VL+ G
Sbjct: 399 KKGDVWKGXKXLKEMQRNGHVPXVVT--YNVLMNG 431



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 2/230 (0%)

Query: 119 AYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
           A    G    V    V+ N   K    ++   +  +M    L P+++ +  +I   C+ G
Sbjct: 202 AMXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNG 261

Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
            +  A E+ K M    L PD ITY ++  G C  G L  A GL   M   G   +   Y+
Sbjct: 262 RVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYT 321

Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
            L+DG C+ G ++ A E    M +E  +   + V YT++I   C +G   +A  +L  M 
Sbjct: 322 TLIDGCCKEGDLDAAFEHRKRMIQE--NIXLDDVAYTALISGLCQEGRSXDAEKMLREML 379

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           ++G  P+  T + +I  FC +G++ +  + + ++   G V     Y+ L+
Sbjct: 380 SVGLKPDXGTYTMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVTYNVLM 429



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 8/240 (3%)

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI  +  +I  +  +G L DA   +++ + H           +L+ + +L    R  +L+
Sbjct: 71  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKL----RYFKLV 126

Query: 258 GEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
               +E  +C    ++  +  ++  FC  G ++ A  + D +   G  P   + +TL+ G
Sbjct: 127 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNG 186

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +   G LDE ++L   + A G       YS L+  L +   + +  +LF +ML  G+ P+
Sbjct: 187 YIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPN 246

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  + +I   C  G+V     +Y+ +  +      D   ++ L  GLC+K    +A  L
Sbjct: 247 SVTFTTLIDGHCKNGRVDLAMEIYKQM--LSQXLXPDFITYNTLXYGLCKKGDLNQAHGL 304



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
            V    +I  LC++ R + +A  +LR+M    L+PD   Y  +I  FC+KGD+    + +
Sbjct: 352 DVAYTALISGLCQEGR-SXDAEKMLREMLSVGLKPDXGTYTMIINEFCKKGDVWKGXKXL 410

Query: 188 KGMGLIDLYPDIITYVSMIKG 208
           K M      P ++TY  ++ G
Sbjct: 411 KEMQRNGHVPXVVTYNVLMNG 431


>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 257

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 131/250 (52%), Gaps = 2/250 (0%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M +  ++ D +I   ++   C+ G+ I A  L   M    ++P+++TY  MI  FC++GR
Sbjct: 1   MGQSHIKADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGR 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
             DA  L + M       ++V +SAL++   +   +  A E+  EM +      P  +TY
Sbjct: 61  WSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWS--IFPTTITY 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            S+I  FC +  + +A  +LD M + GC+P+ VT STLI G+C    +D   ++  ++  
Sbjct: 119 NSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHR 178

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G V++   Y++L+    +   L  A+ L ++M++ GV PD +    M+  LC   ++ +
Sbjct: 179 RGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRK 238

Query: 395 GFCLYEDIEK 404
            F + ED++K
Sbjct: 239 AFAILEDLQK 248



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 110/199 (55%), Gaps = 3/199 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I + C   R + +A  +LR M E  + PD + ++ +I  F ++  +  A+E+ K M   
Sbjct: 51  MIDSFCHSGRWS-DADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRW 109

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            ++P  ITY SMI GFC   R++DA  +   M   GC+ ++V +S L++G C+   ++  
Sbjct: 110 SIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNG 169

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +E+  EM + G     N VTYT++I  FC  G +  A  +L+ M + G AP+ +T   ++
Sbjct: 170 MEIFCEMHRRG--IVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCML 227

Query: 314 KGFCVEGNLDEAYQLIDKV 332
            G C +  L +A+ +++ +
Sbjct: 228 AGLCSKKELRKAFAILEDL 246



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 90/158 (56%), Gaps = 2/158 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K R  +EA  + ++M  + + P TI YN++I  FC++  +  A  ++  M      PD++
Sbjct: 92  KERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVV 151

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           T+ ++I G+C A R+++   +F  M R G  AN V Y+ L+ G C++G ++ A +LL EM
Sbjct: 152 TFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEM 211

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
              G   +P+ +T+  ++   C K  +++A  IL+ ++
Sbjct: 212 ISCG--VAPDYITFHCMLAGLCSKKELRKAFAILEDLQ 247



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 98/194 (50%), Gaps = 4/194 (2%)

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
           A++V  +A++D +C+ G+   A  L  EM ++G    PNV+TY  +I  FC  G   +A 
Sbjct: 8   ADVVISTAIVDRLCKDGNHINAQNLFTEMHEKG--IFPNVLTYNCMIDSFCHSGRWSDAD 65

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +L  M      P+ VT S LI  F  E  + EA ++  +++      +   Y+S++   
Sbjct: 66  QLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGF 125

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +  R+ +A+++   M + G  PD +  S +I   C   +V  G  ++ ++ + G +++ 
Sbjct: 126 CKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANT 185

Query: 412 DSDIHSVLLLGLCR 425
            +  ++ L+ G C+
Sbjct: 186 VT--YTTLIHGFCQ 197



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 5/145 (3%)

Query: 83  WAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142
           W+   ++  ++S M +  C+  R+     ++    ++   +GC   V     + N   KA
Sbjct: 109 WSIFPTTITYNS-MIDGFCKQDRVDDAKRML----DSMASKGCSPDVVTFSTLINGYCKA 163

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           +  +  M +  +M    +  +T+ Y  +I  FC+ GD+ AA +L+  M    + PD IT+
Sbjct: 164 KRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITF 223

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKR 227
             M+ G C+   L  A  + + +++
Sbjct: 224 HCMLAGLCSKKELRKAFAILEDLQK 248


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 164/340 (48%), Gaps = 8/340 (2%)

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
           SR+ Q+    I V E  +  G    +    V+ N   KARL N    V +KM    + P+
Sbjct: 165 SRMTQDA---IQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPN 221

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
             I+N +I   C+ GD+  A++L+  M    ++PD+ TY ++I  +C  G   +A G+  
Sbjct: 222 IHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQD 281

Query: 224 VMKRHGCAANLVAYSALLDGICR-LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
            M+R G + ++V Y++L+ G CR +  +E AL L   ME EG    P VVTY S+++  C
Sbjct: 282 RMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEG--LHPGVVTYNSILRKLC 339

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            +G +K+A  +L+ M      P+ VT +TLI  +C  G++  A ++  K++  G      
Sbjct: 340 EEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQF 399

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            + +L+    +   +  A++   +ML +G  P     S ++              L +++
Sbjct: 400 TFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDEL 459

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            + G    VD  ++  L+  LC+ +    A ++   M  K
Sbjct: 460 SRKGLF--VDISVYRALIRRLCKIDKIESAERIFTLMQGK 497



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 143/296 (48%), Gaps = 47/296 (15%)

Query: 179 DMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           D +++  ++  +  I   PD    I++++ +   + N+   +DA  +F+ M+ HG   +L
Sbjct: 130 DYLSSPSVLNAVVRIHDDPDSNSQILSWLVIF--YANSRMTQDAIQVFEHMRVHGFKPHL 187

Query: 235 VAYSALLDGI-----------------------------------CRLGSMERALELLGE 259
            A + LL+ +                                   C+ G +E+A +LL E
Sbjct: 188 HACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNE 247

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           ME       P++ TY ++I ++C KGM  EALGI DRME  G +P+ VT ++LI GFC E
Sbjct: 248 MESRF--IFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCRE 305

Query: 320 GN-LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            N L+EA +L + +   G       Y+S++ +L    ++K+A +L ++M    V+PD + 
Sbjct: 306 VNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVT 365

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           C+ +I   C  G +     + + + + G     D      L+ G C K H V++AK
Sbjct: 366 CNTLINAYCKIGDMGSAMKVKKKMLEAGL--KPDQFTFKALIHGFC-KLHEVDSAK 418



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 6/153 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM V +KM E  L+PD   +  +I  FC+  ++ +A E +  M      P   TY  ++ 
Sbjct: 382 AMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVD 441

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--G 265
            + +    E    L   + R G   ++  Y AL+  +C++  +E A  +   M+ +G  G
Sbjct: 442 SYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKG 501

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           D     V YTS+   +   G    A  +LD M+
Sbjct: 502 DS----VVYTSLAYAYFKAGKAIAASDMLDEMD 530


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 147/290 (50%), Gaps = 12/290 (4%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L KM E  ++PD +IY+ +I   C+ G    A  L   M    + P++ TY  MI 
Sbjct: 280 ALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMID 339

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC+ GR  DA  L + M       +++ ++AL+    + G +  A +L  EM       
Sbjct: 340 GFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC--I 397

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+ VTY S+I  FC      +A  + D M     +P+ VT +T+I  +C    +DE  Q
Sbjct: 398 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQ 453

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ ++   G V++   Y++L+        L  A+ LF +M++ GV PD + C++++   C
Sbjct: 454 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFC 513

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKL 435
              ++ E   L+E I+    +S +D D   +++++ G+C+ +   EA  L
Sbjct: 514 ENEKLEEALELFEVIQ----MSKIDLDTVAYNIIIHGMCKGSKVDEAWDL 559



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 142/294 (48%), Gaps = 8/294 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ +  +M E  L P  I +N +I   C +G ++ A  L+  M    L+ D++TY +++
Sbjct: 209 EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 268

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C  G  + A  L   M+      ++V YSA++D +C+ G    A  L  EM ++G  
Sbjct: 269 NGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG-- 326

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            +PNV TY  +I  FC  G   +A  +L  M      P+ +T + LI     EG L EA 
Sbjct: 327 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAE 386

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L D+++          Y+S++    +  R  +A+ +F  M +    PD +  + +I   
Sbjct: 387 KLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVY 442

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           C   +V EG  L  +I + G +++  +  ++ L+ G C  ++   A  L + M+
Sbjct: 443 CRAKRVDEGMQLLREISRRGLVANTTT--YNTLIHGFCEVDNLNAAQDLFQEMI 494



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 139/306 (45%), Gaps = 25/306 (8%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFC----------------EKGDMIAADELMKGMG 191
           ++    K+ +   +PD + +N ++   C                E G  + A  L   M 
Sbjct: 160 SLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG-FLEAVALFDQMV 218

Query: 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
            I L P +IT+ ++I G C  GR+ +A  L   M   G   ++V Y  +++G+C++G  +
Sbjct: 219 EIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTK 278

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
            AL LL +ME+      P+VV Y+++I   C  G   +A  +   M   G APN  T + 
Sbjct: 279 SALNLLSKMEET--HIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 336

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           +I GFC  G   +A +L+  ++          +++L+   V+  +L EAEKL  +ML   
Sbjct: 337 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 396

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           + PD +  + MI   C   +  +   +++       ++S D    + ++   CR     E
Sbjct: 397 IFPDTVTYNSMIYGFCKHNRFDDAKHMFD------LMASPDVVTFNTIIDVYCRAKRVDE 450

Query: 432 AAKLAR 437
             +L R
Sbjct: 451 GMQLLR 456



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 34/305 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R + +A  +LR M E ++ PD + +N +I    ++G +  A++L   M   
Sbjct: 337 MIDGFCSFGRWS-DAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHR 395

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVM---------------------------- 225
            ++PD +TY SMI GFC   R +DA  +F +M                            
Sbjct: 396 CIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLL 455

Query: 226 ---KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
               R G  AN   Y+ L+ G C + ++  A +L  EM   G    P+ +T   ++  FC
Sbjct: 456 REISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHG--VCPDTITCNILLYGFC 513

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
               ++EAL + + ++      + V  + +I G C    +DEA+ L   +   G      
Sbjct: 514 ENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQ 573

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y+ ++        + +A  LF KM  +G +PD    + +IR     G++ +   L  ++
Sbjct: 574 TYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 633

Query: 403 EKIGF 407
              GF
Sbjct: 634 RSNGF 638



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 127/277 (45%), Gaps = 24/277 (8%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N VI +F        A  L + M +  +  +I ++  +IK FC+  +L  +   F  + +
Sbjct: 110 NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTK 169

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   ++V ++ LL G+C    +  AL L G M + G                       
Sbjct: 170 LGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG----------------------F 207

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            EA+ + D+M  +G  P  +T +TLI G C+EG + EA  L++K+V  G       Y ++
Sbjct: 208 LEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI 267

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           V  + +    K A  L SKM  + +KPD +  S +I  LC  G   +   L+ ++ + G 
Sbjct: 268 VNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGI 327

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             +V +  ++ ++ G C      +A +L R M+++ I
Sbjct: 328 APNVFT--YNCMIDGFCSFGRWSDAQRLLRDMIEREI 362



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 124/283 (43%), Gaps = 32/283 (11%)

Query: 64  EVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSI-----IIDV- 116
           E+LHRC FP         + +       +H+ F  + A  M  +  +P +     IIDV 
Sbjct: 391 EMLHRCIFPDTVTYNSMIYGFC------KHNRF--DDAKHMFDLMASPDVVTFNTIIDVY 442

Query: 117 ------------VEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
                       +      G V +      +I   CE   L N A  + ++M    + PD
Sbjct: 443 CRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNL-NAAQDLFQEMISHGVCPD 501

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
           TI  N ++  FCE   +  A EL + + +  +  D + Y  +I G C   ++++A  LF 
Sbjct: 502 TITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFC 561

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            +  HG   ++  Y+ ++ G C   ++  A  L  +M+  G +  P+  TY ++I+    
Sbjct: 562 SLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE--PDNSTYNTLIRGCLK 619

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            G + +++ ++  M + G + +  TI  ++     +G LD+++
Sbjct: 620 AGEIDKSIELISEMRSNGFSGDAFTIK-MVADLITDGRLDKSF 661



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 19/202 (9%)

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK----- 331
           VI +F        A+ +  +ME      N  + + LIK FC    L  +     K     
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171

Query: 332 ----VVAGGSVSSGGCYSSLVVE-------LVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
               VV   ++  G C    + E       +V T  L EA  LF +M+  G+ P  +  +
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFL-EAVALFDQMVEIGLTPVVITFN 230

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            +I  LCL G+VLE   L   +   G    +D   +  ++ G+C+   +  A  L   M 
Sbjct: 231 TLINGLCLEGRVLEAAALVNKMVGKGL--HIDVVTYGTIVNGMCKMGDTKSALNLLSKME 288

Query: 441 KKRIWLQGPYVDKIVEHLKKSG 462
           +  I         I++ L K G
Sbjct: 289 ETHIKPDVVIYSAIIDRLCKDG 310


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 166/347 (47%), Gaps = 41/347 (11%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   +  ++++  L ++ E  L P  I YN +I  +C +G +  A +    M      P
Sbjct: 239 LCRSGK-TDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKP 297

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ T   +++G C  G L++A  LF      G A + V Y+ ++ G+C+ G  E A +LL
Sbjct: 298 DLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLL 357

Query: 258 GEMEKE--GGDC--------------------------------SPNVVTYTSVIQIFCG 283
            EME++  G DC                                 P++ T   +++  C 
Sbjct: 358 AEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCT 417

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV-VAGGSVSSGG 342
           +GM+  AL + +   + G A + VT +T+I G C EG  +EA+ L+ ++    G V    
Sbjct: 418 EGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQT 477

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y+++++   R  ++++A +  +KM+    KPD   C++++R LC  G +++   L+   
Sbjct: 478 TYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTW 537

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449
              G   ++D+  ++ ++ GLC++    EA  L   M +K++   GP
Sbjct: 538 ISKG--KAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKL---GP 579



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 128/278 (46%), Gaps = 39/278 (14%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE-KGDMIAAD 184
           + +V    +I  LC++ R   EA  +L +M E  L PD   YN ++    + +G +  A 
Sbjct: 332 IDAVTYNTIISGLCKEGRF-EEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAF 390

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +    M      PD+ T   +++G C  G L++A  LF      G A + V Y+ ++ G+
Sbjct: 391 QFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGL 450

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM------- 297
           C+ G  E A +LL EME++ G   P+  TY ++I  +C +G +++A    ++M       
Sbjct: 451 CKEGRFEEAFDLLAEMEEKNG-LVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKP 509

Query: 298 -------------------EAL---------GCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
                              +AL         G A + VT +T+I G C EG  +EA+ L+
Sbjct: 510 DLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLL 569

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            ++           Y++++  L    R+ EAE+  SK+
Sbjct: 570 AEMKEKKLGPDCYTYNAILCALADAGRM-EAEEFMSKI 606



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 115/246 (46%), Gaps = 22/246 (8%)

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  + +  R   A  +F  MKR     NL+  + L++ + R  S                
Sbjct: 142 IGAYVSCNRPHHAAQIFNRMKRLHLKPNLLTRNTLINALVRYPSKPSV------------ 189

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK--GFCVEGNLD 323
            C    + +T+VI+ F  K  + EA+G++ +M+   C P+  + +T++     C  G  D
Sbjct: 190 -CLSKAI-FTNVIK-FGVKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTD 246

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           ++   +++++  G V     Y++++    R  ++++A +  +KM+    KPD   C++++
Sbjct: 247 QSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILL 306

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           R LC  G +     L+      G   ++D+  ++ ++ GLC++    EA  L   M +K+
Sbjct: 307 RGLCTEGMLDNALKLFNTWISKG--KAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKK 364

Query: 444 IWLQGP 449
           +   GP
Sbjct: 365 L---GP 367


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 175/368 (47%), Gaps = 44/368 (11%)

Query: 134 VIFNLC----EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           V++N+C     KA   + A     +M    L  D + Y ++I + C+   +  A EL + 
Sbjct: 271 VLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEH 330

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M      P    Y +MI G+  AG+ EDA  L +  +R GC  ++V+Y+ +L  + R G 
Sbjct: 331 MDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQ 390

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-------- 301
           ++ AL+   EM+K   D  PN+ TY  +I + C  G ++ AL + D M+  G        
Sbjct: 391 VDEALKKFEEMKK---DAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITV 447

Query: 302 ---------------------------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
                                      C P+ VT  +LI+G    G +DEAY+L ++++ 
Sbjct: 448 NIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLD 507

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
              + +   Y+SL+    +  R ++  K++++ML  G  PD L  +  +  +   G++ +
Sbjct: 508 ANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEK 567

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           G  L+++I+ +GF+   D+  +++L+ GL +   + EA +L   M ++   L     + +
Sbjct: 568 GRALFQEIKNLGFIP--DARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625

Query: 455 VEHLKKSG 462
           ++   KSG
Sbjct: 626 IDGFCKSG 633



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 160/331 (48%), Gaps = 8/331 (2%)

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
           R+ +   +   +++A +    VV   +++  F    K     +   +  +M      PD 
Sbjct: 494 RVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRK----EDGHKIYNEMLRLGCSPDL 549

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           ++ N  +    + G++     L + +  +   PD  +Y  +I G   AG   +A  LF  
Sbjct: 550 LLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYT 609

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           MK  GC  +  AY+ ++DG C+ G + +A +LL EM+ +G +  P VVTY SVI      
Sbjct: 610 MKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHE--PTVVTYGSVIDGLAKI 667

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             + EA  + +  ++ G   N V  S+LI GF   G +DEAY ++++++  G   +   +
Sbjct: 668 DRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTW 727

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + L+  LV+ + + EA   F  M      P+ +  S++I  LC   +  + F  +++++K
Sbjct: 728 NCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQK 787

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            GF  +V +  ++ ++ GL +  + VEA  L
Sbjct: 788 QGFKPNVFT--YTTMISGLAKAGNIVEADTL 816



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 135/281 (48%), Gaps = 2/281 (0%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K  G +   +   ++ +   KA  A+EA  +   M E     DT  YN VI  FC+ G +
Sbjct: 576 KNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKV 635

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A +L++ M      P ++TY S+I G     RL++A  LF+  K  G   N+V YS+L
Sbjct: 636 NKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSL 695

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG  ++G ++ A  ++ E+ ++G   +PNV T+  ++        + EAL     M+ L
Sbjct: 696 IDGFGKVGRIDEAYLIMEELMQKG--LTPNVYTWNCLLDALVKAEEISEALVCFQSMKDL 753

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
            C PN +T S LI G C     ++A+    ++   G   +   Y++++  L +   + EA
Sbjct: 754 KCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEA 813

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
           + LF K    G   D    + +I  L    +  + + L+E+
Sbjct: 814 DTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEE 854



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 145/296 (48%), Gaps = 2/296 (0%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V +A K+ G   +V  + ++ +   KA+  ++A  +   +     RPD + Y ++I    
Sbjct: 431 VRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLG 490

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
             G +  A +L + M   +  P+ + Y S+I+ F   GR ED   ++  M R GC+ +L+
Sbjct: 491 RHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLL 550

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
             +  +D + + G +E+   L  E++  G    P+  +YT +I      G   EA  +  
Sbjct: 551 LLNTYMDCVFKAGEIEKGRALFQEIKNLG--FIPDARSYTILIHGLVKAGFAHEAYELFY 608

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+  GC  +    +T+I GFC  G +++AYQL++++   G   +   Y S++  L +  
Sbjct: 609 TMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKID 668

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           RL EA  LF +  + G++ + +  S +I      G++ E + + E++ + G   +V
Sbjct: 669 RLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNV 724



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 128/278 (46%), Gaps = 4/278 (1%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN+++ +          +++++ M +    P   T + ++  F  + +L +A    + M+
Sbjct: 133 YNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMR 192

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
           +        AY+ L+  +      +  L L  +M++ G   + NV  +T++I++F  +G 
Sbjct: 193 KLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELG--YAVNVHLFTTLIRVFAREGR 250

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +  AL +LD M++    P+ V  +  I  F   G +D A++   ++ A G V     Y+S
Sbjct: 251 VDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTS 310

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++  L +  RL EA +LF  M  +   P   A + MI    + G+  + + L E   + G
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG 370

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            + SV S  ++ +L  L RK    EA K    M K  I
Sbjct: 371 CIPSVVS--YNCILSCLGRKGQVDEALKKFEEMKKDAI 406


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 156/321 (48%), Gaps = 6/321 (1%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V ++    ++  LC   R ++    VLR+M +    P+   YN +++  C++     A E
Sbjct: 124 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALE 183

Query: 186 LMKGMGLI--DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
           L++ M     D  PD+++Y ++I GF   G L+ A G +  M   G   N+V YS+++  
Sbjct: 184 LLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAA 243

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +C+  +M++A+E+L  M K G    PN  TY S++  +C  G  KEA+G L +M + G  
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNG--VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVE 301

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ VT ++L+   C  G   EA ++ D +   G       Y +L+        L E   L
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
              M+ +G+ P+    S++I      G+V +   ++  + + G   + D+  +  ++  L
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL--NPDTVTYGTVIGIL 419

Query: 424 CRKNHSVEAAKLARFMLKKRI 444
           C+     +A +    M+ +R+
Sbjct: 420 CKSGRVEDAMRYFEQMIDERL 440



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 144/290 (49%), Gaps = 6/290 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIF-NLCEKARLANEAMWVLRKMPE--FDLRPDTIIYNNVIR 172
           V+    + GC+ +V    ++   LC++ R + EA+ +L+ MP+   D  PD + Y  VI 
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENR-SQEALELLQMMPDDGGDCPPDVVSYTTVIN 207

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
            F ++GD+  A      M    + P+++TY S+I   C A  ++ A  +   M ++G   
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP 267

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N   Y++++ G C  G  + A+  L +M  +G    P+VVTY S++   C  G   EA  
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG--VEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D M   G  P   T  TL++G+  +G L E + L+D +V  G   +   +S L+    
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           +  ++ +A  +FSKM   G+ PD +    +I  LC  G+V +    +E +
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 125/243 (51%), Gaps = 2/243 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A     +M +  + P+ + Y+++I   C+   M  A E++  M    + P+  TY S+
Sbjct: 216 DKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSI 275

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + G+C++G+ ++A G  K M   G   ++V Y++L+D +C+ G    A ++   M K G 
Sbjct: 276 VHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG- 334

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              P + TY +++Q +  KG + E  G+LD M   G  PN    S LI  +  +G +D+A
Sbjct: 335 -LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             +  K+   G       Y +++  L ++ R+++A + F +M+   + P  +  + +I  
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453

Query: 386 LCL 388
           LC+
Sbjct: 454 LCI 456



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 5/238 (2%)

Query: 160 LRPDTIIYNNVIRLFC-EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            R D I +  +++  C +K    A D +++ M  +   P++ +Y  ++KG C+  R ++A
Sbjct: 122 FRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEA 181

Query: 219 CGLFKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
             L ++M   G  C  ++V+Y+ +++G  + G +++A     EM   G    PNVVTY+S
Sbjct: 182 LELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRG--ILPNVVTYSS 239

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   C    M +A+ +L  M   G  PN  T ++++ G+C  G   EA   + K+ + G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                  Y+SL+  L +  R  EA K+F  M   G+KP+      +++     G ++E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 38/294 (12%)

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC- 245
           M   G  ++ P++ TY  +I   C AGRL+        + + G   + +A++ LL G+C 
Sbjct: 79  MARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 246 ----------------RLGSM-------------------ERALELLGEMEKEGGDCSPN 270
                           +LG +                   + ALELL  M  +GGDC P+
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPD 198

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           VV+YT+VI  F  +G + +A G    M   G  PN VT S++I   C    +D+A +++ 
Sbjct: 199 VVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLT 258

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
            +V  G + +   Y+S+V     + + KEA     KM + GV+PD +  + ++  LC  G
Sbjct: 259 SMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNG 318

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +  E   +++ + K G    + +  +  LL G   K   VE   L   M++  I
Sbjct: 319 RCTEARKMFDSMTKRGLKPEITT--YGTLLQGYATKGALVEMHGLLDLMVRNGI 370



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 99/192 (51%), Gaps = 3/192 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C   +   EA+  L+KM    + PD + YN+++   C+ G    A ++   M   
Sbjct: 275 IVHGYCSSGQ-PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+I TY ++++G+   G L +  GL  +M R+G   N   +S L+    + G +++A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +  +M ++G   +P+ VTY +VI I C  G +++A+   ++M     +P  +  ++LI
Sbjct: 394 MLVFSKMRQQG--LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLI 451

Query: 314 KGFCVEGNLDEA 325
              C+    D+A
Sbjct: 452 HSLCIFDKWDKA 463


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 141/288 (48%), Gaps = 15/288 (5%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +VI  LC  +R+ N A ++ ++M    + PD   Y  +I  F + G +  A   +  M  
Sbjct: 494 EVIGFLCNASRVEN-AFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVR 552

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P ++TY ++I  +  A ++  A  LF++M   GC  N++ Y+AL+DG C+ G++E+
Sbjct: 553 DGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEK 612

Query: 253 ALELLGEME--------------KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           A ++   M               K      PNVVTY +++   C    +K+A  +L+ M 
Sbjct: 613 ACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMF 672

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             GC PN +    LI GFC    LDEA ++  K+V  G   +   YSSL+  L + KRL 
Sbjct: 673 VDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLD 732

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
              K+ SKML +   P+ +  + MI  L    +  E + L   +E+ G
Sbjct: 733 LVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKG 780



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 150/307 (48%), Gaps = 18/307 (5%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +GC  +V     + +   KA+  + A  +   M      P+ I Y  +I  +C+ G++  
Sbjct: 553 DGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEK 612

Query: 183 ADEL---MKG---MGLIDLY----------PDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           A ++   M+G   +  +D+Y          P+++TY +++ G C A +++DA  L + M 
Sbjct: 613 ACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMF 672

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             GC  N + Y AL+DG C+   ++ A E+  +M + G +  PNV TY+S+I        
Sbjct: 673 VDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYN--PNVYTYSSLIDRLFKDKR 730

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +   L +L +M    CAPN V  + +I G       DEAY+L+  +   G   +   Y++
Sbjct: 731 LDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTA 790

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++    +  ++ +  +LF +M + G  P+ +  +V+I   C  G + E + L E++++  
Sbjct: 791 MIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTY 850

Query: 407 FLSSVDS 413
           +   V S
Sbjct: 851 WPKHVSS 857



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 158/366 (43%), Gaps = 31/366 (8%)

Query: 93  SSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
           ++ +YN+     CE S  ++     +D +   +   C+ +V+  +++   C   +     
Sbjct: 307 NTILYNKMISGLCEASFFEE----AMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRC 362

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             +L  M      P   I+N+++  +C+  D   A +L+K M   +  P  + Y  +I  
Sbjct: 363 KRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGS 422

Query: 209 FCNAGRL------EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            C+ G L      E A   +  M   G   N V   +    +C  G  E+A +++ EM  
Sbjct: 423 ICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMM- 481

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    P+  TY+ VI   C    ++ A  +   M+  G  P+  T + LI  F   G +
Sbjct: 482 -GNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGII 540

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            +A+  +D++V  G   +   Y++L+   ++ K++  A +LF  M+A G  P+ +  + +
Sbjct: 541 KQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTAL 600

Query: 383 IRELCLGGQVLEGFCLY------EDIEKIGFLSSVDSDI--------HSVLLLGLCRKNH 428
           I   C  G + +   +Y       DI  +     + +++        +  L+ GLC K H
Sbjct: 601 IDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLC-KAH 659

Query: 429 SVEAAK 434
            V+ A+
Sbjct: 660 KVKDAR 665



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 6/227 (2%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           VL KM E    P+ +IY  +I    +      A +LM  M      P+++TY +MI GF 
Sbjct: 737 VLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFG 796

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
            AG+++    LF+ M   GCA N V Y+ L++  C  G ++ A  LL EM++       +
Sbjct: 797 KAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYW--PKH 854

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           V +Y  VI+ +  + ++  +LG+L+ +E  G AP  +    LI  F   G L+ A +L  
Sbjct: 855 VSSYCKVIEGYKREFIL--SLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHK 912

Query: 331 KVVAG--GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +V++      +    Y+SL+       ++  A +LF  M+  GV PD
Sbjct: 913 EVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPD 959



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 150/361 (41%), Gaps = 46/361 (12%)

Query: 47  EKT---LATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM 103
           EKT   L   + KL+   V+E+L   F    ++ ++FF+WA  Q  Y H+  +Y    ++
Sbjct: 123 EKTHIVLRQFRQKLNPDLVVEILS--FLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDV 180

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
                   +  + +   + +   V  K++ V+   C +  L N A+  L ++ +F  +P 
Sbjct: 181 FERGSYDRVPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPT 240

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
            + YN                                   ++++ F  A +L+ A  + +
Sbjct: 241 RMTYN-----------------------------------ALVQVFLRADKLDTAQLVHR 265

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M   G + +          +C++G    AL L+   EKE  D  PN + Y  +I   C 
Sbjct: 266 EMSELGLSMDEFTLGFFAQALCKVGKWREALSLI---EKE--DFVPNTILYNKMISGLCE 320

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
               +EA+  L+RM +  C PN  T   L+ G   +  L    +++  ++A G   S   
Sbjct: 321 ASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTI 380

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           ++SLV    ++     A KL  KM     KP  +  +++I  +C GG+ L G   +E  E
Sbjct: 381 FNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGE-LPGPVTFELAE 439

Query: 404 K 404
           K
Sbjct: 440 K 440



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 129/280 (46%), Gaps = 6/280 (2%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
           ++  Y  + + Y+   +     +   +++ V+    E  C  ++ +   + +   K    
Sbjct: 707 VERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKT 766

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA  ++  M E   +P+ + Y  +I  F + G +    EL + MG     P+ +TY  +
Sbjct: 767 DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVL 826

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I   C  G L++A  L + MK+     ++ +Y  +++G  R      +L LL E+EK G 
Sbjct: 827 INHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKR--EFILSLGLLEEVEKNGS 884

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRM--EALGCAPNRVTISTLIKGFCVEGNLD 323
             +P ++ Y  +I  F   G ++ AL +   +   ++     +   ++LI  F     +D
Sbjct: 885 --APTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKID 942

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
            A++L   ++  G +   G +  L++ L+R +R +EA +L
Sbjct: 943 HAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQL 982


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 149/304 (49%), Gaps = 4/304 (1%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           D  PD + Y+ VI  F ++GD+         M    + P+++TY S+I   C A  ++ A
Sbjct: 7   DCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKA 66

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             +   M + G   + + Y++++ G C  G  + A+  L +M  +G    P+VVTY S++
Sbjct: 67  MEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDG--VEPDVVTYNSLM 124

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C  G   EA  I D M   G  P+  T  TL++G+  +G L E + L+D +V  G  
Sbjct: 125 DYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 184

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   +S LV    + ++++EA  +FSKM   G+ P+ +    +I  LC  G+V +    
Sbjct: 185 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 244

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
           +E +   G     DS +++ L+  LC  +   +A +L   ML + I L   + + I++  
Sbjct: 245 FEQMIDEGLRP--DSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSH 302

Query: 459 KKSG 462
            K G
Sbjct: 303 CKEG 306



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 136/273 (49%), Gaps = 3/273 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KA+  ++AM VL  M +  + PD + YN+++  FC  G    A   +K M   
Sbjct: 53  IIAALC-KAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSD 111

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD++TY S++   C  GR  +A  +F  M + G   ++  Y  LL G    G++   
Sbjct: 112 GVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEM 171

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL  M + G    PN   ++ ++  +  +  ++EA+ +  +M   G  PN VT  T+I
Sbjct: 172 HGLLDLMVRNG--IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVI 229

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C  G +++A    ++++  G       Y+SL+  L    + ++AE+LF +ML  G+ 
Sbjct: 230 DVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGIC 289

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
              +  + +I   C  G+V+E   L++ + +IG
Sbjct: 290 LSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIG 322



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 3/242 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++   C   +   EA+  L+KM    + PD + YN+++   C+ G    A ++   M   
Sbjct: 88  IVHGFCSSGQ-PKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKR 146

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PDI TY ++++G+   G L +  GL  +M R+G   N   +S L+    +   +E A
Sbjct: 147 GLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEA 206

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +  +M ++G   +PN VTY +VI + C  G +++A+   ++M   G  P+ +  ++LI
Sbjct: 207 MLVFSKMRQQG--LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLI 264

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C+    ++A +L  +++  G   S   ++S++    +  R+ E+ KLF  M+  GVK
Sbjct: 265 HSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVK 324

Query: 374 PD 375
           PD
Sbjct: 325 PD 326



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 2/185 (1%)

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M  +GGDC P+VV+Y++VI  F  +G + +     + M     +PN VT +++I   C  
Sbjct: 1   MADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKA 60

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
             +D+A +++  +V  G +     Y+S+V     + + KEA     KM + GV+PD +  
Sbjct: 61  QTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTY 120

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + ++  LC  G+  E   +++ + K G    + +  +  LL G   K   VE   L   M
Sbjct: 121 NSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITT--YGTLLQGYATKGALVEMHGLLDLM 178

Query: 440 LKKRI 444
           ++  I
Sbjct: 179 VRNGI 183


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 137/279 (49%), Gaps = 3/279 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ +  +M +    P+T+ YN +I   C  G M+ A  + + M    ++P+  TY ++I
Sbjct: 331 EALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLI 390

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GF  AG L  A  ++  M  +GC  N+V Y+ ++D +CR      AL L+  M    G+
Sbjct: 391 DGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMAN--GN 448

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C PN +T+ + I+  C  G  + A+ +L++M   GCAPN  T + ++ G        EA 
Sbjct: 449 CPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREAL 508

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           Q++ ++      S+   Y++++         K A ++  K+L  G KPD +  + +I   
Sbjct: 509 QIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAY 568

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           C  G+V     L + + K G     D   ++ LL G+C 
Sbjct: 569 CKQGEVKTAIQLVDRLTKKG-EGYPDVFTYTSLLWGVCN 606



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 178/389 (45%), Gaps = 37/389 (9%)

Query: 76  MGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI 135
           + + FF   A  +S++H+   Y    +    +++   I  +++  K EG   +  +  ++
Sbjct: 55  LALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIV 114

Query: 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
            N   +A LA +A+    ++ EF  +P   IYN+V+     +      + +   M    +
Sbjct: 115 INAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGI 174

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA-- 253
             ++ TY  ++K  C   R++ A  L   M   GC  + V+Y+ ++  +CRLG +E A  
Sbjct: 175 ELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARE 234

Query: 254 ----------------------------LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
                                        EL  EM  EG D  P+V+TY++VI      G
Sbjct: 235 LSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGID--PDVITYSTVINTLSEMG 292

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            ++ AL +L +M   GC+PN  T ++L+KG+ + G L EA  L ++++  GS  +   Y+
Sbjct: 293 NVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYN 352

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           +L+  L    ++ EA  +  KM  +GV P+    S +I      G ++    ++  +   
Sbjct: 353 TLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITN 412

Query: 406 GFLSSVDSDIHSVLLLGLCRK---NHSVE 431
           G L +V   +++ ++  LCR    NH++ 
Sbjct: 413 GCLPNV--VVYTCMVDVLCRNSMFNHALH 439



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 128/270 (47%), Gaps = 4/270 (1%)

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
           +YN +I  FC +  M    EL   M +  + PD+ITY ++I      G +E A  +   M
Sbjct: 245 VYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKM 304

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
              GC+ N+  +++L+ G    G +  AL+L   M +EG +  PN V Y ++I   C  G
Sbjct: 305 FLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSE--PNTVAYNTLIHGLCSYG 362

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            M EA+ +  +ME  G  PN  T STLI GF   G+L  A ++ +K++  G + +   Y+
Sbjct: 363 KMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYT 422

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
            +V  L R      A  L   M      P+ +  +  I+ LC  G+      +   + + 
Sbjct: 423 CMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQY 482

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           G   +V +  ++ +L GL     + EA ++
Sbjct: 483 GCAPNVTT--YNEVLDGLFNAKRTREALQI 510



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 155/326 (47%), Gaps = 16/326 (4%)

Query: 85  ALQSSYRHSSF-------MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137
           AL++ YR   F       +YN   +    +    +I  +    K +G  ++V    ++  
Sbjct: 127 ALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLK 186

Query: 138 -LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
            LC+  R+ + A  +L +M      PD + Y  V+   C  G +  A EL   M +    
Sbjct: 187 ALCKNDRV-DAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEAREL--SMRIKSFV 243

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P    Y ++I GFC   ++E+   LF  M   G   +++ YS +++ +  +G++E AL +
Sbjct: 244 P---VYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAV 300

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L +M   G  CSPNV T+TS+++ +   G + EAL + +RM   G  PN V  +TLI G 
Sbjct: 301 LAKMFLRG--CSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGL 358

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G + EA  +  K+   G   +   YS+L+    +   L  A ++++KM+ +G  P+ 
Sbjct: 359 CSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNV 418

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDI 402
           +  + M+  LC          L E++
Sbjct: 419 VVYTCMVDVLCRNSMFNHALHLIENM 444



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 116/226 (51%), Gaps = 3/226 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC+ +V +   + ++  +  + N A+ ++  M   +  P+TI +N  I+  C  G    A
Sbjct: 413 GCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWA 472

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            +++  M      P++ TY  ++ G  NA R  +A  +   ++     +NLV Y+ +L G
Sbjct: 473 MKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSG 532

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C  G  + AL++ G++    G   P+ +TY +VI  +C +G +K A+ ++DR+   G  
Sbjct: 533 FCHAGMFKGALQIAGKLLV--GGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEG 590

Query: 304 -PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            P+  T ++L+ G C    +DEA   +DK++  G   +   +++LV
Sbjct: 591 YPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALV 636


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 160/338 (47%), Gaps = 9/338 (2%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV----SVKMMKVIFNLCEKARLANEAMWV 151
           + N  C+  RI  +   + + ++  KEE  V     ++    +I  LC+  R   EA+ +
Sbjct: 193 LINHLCKFRRI-DDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGR-QEEALCL 250

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
           + KM      P T  +N +I  +C  G++  A +L   M    + P++IT  +++ G C 
Sbjct: 251 MGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCK 310

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
             R+  A   F+VM++ G   N V Y+  ++  C + +M +A+E L EM K+G  C P+ 
Sbjct: 311 HNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDG--CFPDA 368

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           V Y ++I      G + +A  ++ +++  G   +RV  + LI  FC +  LD A + +++
Sbjct: 369 VVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNE 428

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML-ASGVKPDGLACSVMIRELCLGG 390
           +   G       Y++L+    +    K A K   KM    G+ P       +I   CL  
Sbjct: 429 MELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNN 488

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
            + E   +++++  +      ++ I+++L+  LC++  
Sbjct: 489 NIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQ 526



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 148/341 (43%), Gaps = 46/341 (13%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE---KGDMIAADELMKG---MGLID 194
           KAR   +   ++RKM + +++P  I +  +I   C+     D +   E MKG      + 
Sbjct: 164 KAREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVF 223

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           + PD I Y ++I G C  GR E+A  L   M+   CA     ++ L++G CR G +E A 
Sbjct: 224 VAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAH 283

Query: 255 ELLGEMEKEGGDCSPNV-----------------------------------VTYTSVIQ 279
           +L  EM  E     PNV                                   VTYT  I 
Sbjct: 284 KLFNEM--ENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFIN 341

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            FC    M +A+  LD M   GC P+ V   TLI G    G LD+A  ++ K+   G   
Sbjct: 342 AFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCL 401

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC-LGGQVLEGFCL 398
              CY+ L+ E  +  +L  A++  ++M  +GVKPD +  + +I     +G   L    +
Sbjct: 402 DRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFM 461

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            +  E+ G   +V +  +  L+   C  N+  EA K+ + M
Sbjct: 462 KKMTEEEGLSPTVFT--YGALIHAYCLNNNIDEAIKIFKEM 500



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 138/323 (42%), Gaps = 45/323 (13%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA---------------------- 183
           +E   ++ K  + ++ PDTI    +I   C  G+   A                      
Sbjct: 99  DEIAGLVSKFGKHNIFPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNAL 158

Query: 184 -------------DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG- 229
                        + LM+ M  +++ P +IT+  +I   C   R++DA  +F+ MK    
Sbjct: 159 LTGLGKAREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKE 218

Query: 230 -----CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
                 A + + Y+ L+DG+C++G  E AL L+G+M  +   C+P   T+  +I  +C  
Sbjct: 219 ETKVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSD--QCAPTTATFNCLINGYCRS 276

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G ++ A  + + ME     PN +T++TL+ G C    +  A +    +   G   +   Y
Sbjct: 277 GEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTY 336

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +  +        + +A +   +M   G  PD +    +I  L   G++ +   +   +++
Sbjct: 337 TVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKE 396

Query: 405 IGFLSSVDSDIHSVLLLGLCRKN 427
            GF   +D   ++VL+   C+KN
Sbjct: 397 AGF--CLDRVCYNVLISEFCKKN 417



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 122/291 (41%), Gaps = 37/291 (12%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           +C+  R++  A+   R M +  L+ + + Y   I  FC   +M  A E +  M     +P
Sbjct: 308 MCKHNRIST-AVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFP 366

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D + Y ++I G   AGRL+DA  +   +K  G   + V Y+ L+   C+   ++RA E L
Sbjct: 367 DAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWL 426

Query: 258 GEMEKEG------------------GD----------------CSPNVVTYTSVIQIFCG 283
            EME  G                  G+                 SP V TY ++I  +C 
Sbjct: 427 NEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCL 486

Query: 284 KGMMKEALGILDRME--ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
              + EA+ I   M   A    PN V  + LI   C +  ++ A  L+D +   G + + 
Sbjct: 487 NNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNT 546

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
             Y+S+   L     L +A KL  +M+     PD +   ++   L   G++
Sbjct: 547 TTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWLSAVGEI 597



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 3/228 (1%)

Query: 108 QNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166
            N +  ++ ++   ++GC   +V    +I  L +  RL ++A  V+ K+ E     D + 
Sbjct: 347 NNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRL-DDASSVVSKLKEAGFCLDRVC 405

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM- 225
           YN +I  FC+K  +  A E +  M L  + PD +TY ++I  F   G  + A    K M 
Sbjct: 406 YNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMT 465

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
           +  G +  +  Y AL+   C   +++ A+++  EM        PN V Y  +I   C + 
Sbjct: 466 EEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQT 525

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
            +  AL +LD M+  G  PN  T +++ K    +  LD+A++L+D++V
Sbjct: 526 QVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMV 573



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/240 (19%), Positives = 110/240 (45%), Gaps = 12/240 (5%)

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
           V +++     G +++A   F  +  H  A N    + +++ + + G ++ A+ +L EM  
Sbjct: 10  VHLLRRLGRIGMVDEALAAFSTLDSH--AKNTNVRNEIINLLLKSGRVDNAMNVLDEMLL 67

Query: 263 EGGDCSPNVVT----YTSVIQIFCGKGMMKEA--LGILDRMEALGCAPNRVTISTLIKGF 316
              +  PN  T    + ++++I   +G +KE    G++ +       P+ + ++ LI   
Sbjct: 68  PESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNIFPDTIALTQLISKL 127

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  GN + A+ ++D ++    +      ++L+  L + +   +   L  KM    ++P  
Sbjct: 128 CRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKDMNIQPTV 187

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDI----EKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           +   ++I  LC   ++ +   ++E +    E+     + D+ +++ L+ GLC+     EA
Sbjct: 188 ITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQEEA 247



 Score = 42.0 bits (97), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           N+ E  ++  E   V  K+P     P+T+IYN +I   C++  +  A  L+  M    + 
Sbjct: 489 NIDEAIKIFKEMNNVASKVP-----PNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVM 543

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           P+  TY S+ K   +   L+ A  L   M    C  + +    L + +  +G + +
Sbjct: 544 PNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWLSAVGEITK 599


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 199/434 (45%), Gaps = 23/434 (5%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMS 104
           N+E  L     KL    V+EVL R F    +   RFF WAA +  + H S  YN    + 
Sbjct: 161 NMEAVLDECGVKLSHDLVLEVLAR-FKQARKPAFRFFCWAAQKPGFAHDSKTYNTMMTIL 219

Query: 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
              +    ++ ++E   E+  +++++   V F     A+   +A+ VL  M ++  +   
Sbjct: 220 GKTRQFETMVSLLEEMAEKE-LLTMETFTVCFKAFAAAKERKKAVGVLELMKKYKYKVGV 278

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLI------DLYPDIITYVSMIKGFCNAGRLEDA 218
              N ++       D +   +L K    I         P++ TY  ++ G+C    L +A
Sbjct: 279 ETINCLL-------DSLGRAKLGKEALTIFEKLHGRFTPNLQTYTVLLNGWCRVRNLMEA 331

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             ++  M       ++VA++ +L+G+ R      A++L   M+ +G   SP+V +YT ++
Sbjct: 332 GKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGP--SPDVKSYTILV 389

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
           + FC +  MKEA+   + M+  GC P+    + LI GF  +  +D  Y L+ ++ A G  
Sbjct: 390 RDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCP 449

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
             G  Y++L+  +   +   +A +++ KM+ +G+KP     S+M++          G   
Sbjct: 450 PDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAA 509

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD--KIVE 456
           +++++  G     D + ++V + GL       EA K    M++K   ++ P +D  K   
Sbjct: 510 WDEMKLKG--CCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKG--MKAPQLDYNKFAA 565

Query: 457 HLKKSGDEELITNL 470
              ++G  +++  L
Sbjct: 566 DFSRAGRPDILEEL 579



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 119/282 (42%), Gaps = 43/282 (15%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR--LFCEK-GDMIAAD 184
           +++   V+ N   + R   EA  +  +M + D +PD + +N ++   L C+K  D I   
Sbjct: 311 NLQTYTVLLNGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLF 370

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           E+MK  G     PD+ +Y  +++ FC   ++++A   F+ M+  GC  +   Y+ L+ G 
Sbjct: 371 EVMKAKGP---SPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGF 427

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI----------- 293
                M+    LL EM+  G  C P+  TY ++I++   K M  +A+ I           
Sbjct: 428 GNQKRMDTVYGLLKEMKANG--CPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKP 485

Query: 294 ------------------------LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
                                    D M+  GC P+  + +  I G    G   EA + +
Sbjct: 486 TTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYL 545

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           ++++  G  +    Y+    +  R  R    E+L  KM  SG
Sbjct: 546 EEMIEKGMKAPQLDYNKFAADFSRAGRPDILEELAQKMKFSG 587


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 147/290 (50%), Gaps = 12/290 (4%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L KM E  ++PD +IY+ +I   C+ G    A  L   M    + P++ TY  MI 
Sbjct: 275 ALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMID 334

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC+ GR  DA  L + M       +++ ++AL+    + G +  A +L  EM       
Sbjct: 335 GFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC--I 392

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+ VTY S+I  FC      +A  + D M     +P+ VT +T+I  +C    +DE  Q
Sbjct: 393 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQ 448

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ ++   G V++   Y++L+        L  A+ LF +M++ GV PD + C++++   C
Sbjct: 449 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFC 508

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKL 435
              ++ E   L+E I+    +S +D D   +++++ G+C+ +   EA  L
Sbjct: 509 ENEKLEEALELFEVIQ----MSKIDLDTVAYNIIIHGMCKGSKVDEAWDL 554



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 139/300 (46%), Gaps = 18/300 (6%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEK----------GDMIAADELMKGMGLIDLYP 197
           ++    K+ +   +PD + +N ++   C +          G M+    L   M  I L P
Sbjct: 160 SLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTP 219

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            +IT+ ++I G C  GR+ +A  L   M   G   ++V Y  +++G+C++G  + AL LL
Sbjct: 220 VVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLL 279

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +ME+      P+VV Y+++I   C  G   +A  +   M   G APN  T + +I GFC
Sbjct: 280 SKMEET--HIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFC 337

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G   +A +L+  ++          +++L+   V+  +L EAEKL  +ML   + PD +
Sbjct: 338 SFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTV 397

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + MI   C   +  +   +++       ++S D    + ++   CR     E  +L R
Sbjct: 398 TYNSMIYGFCKHNRFDDAKHMFD------LMASPDVVTFNTIIDVYCRAKRVDEGMQLLR 451



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 140/294 (47%), Gaps = 8/294 (2%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           E   +  +M E  L P  I +N +I   C +G ++ A  L+  M    L+ D++TY +++
Sbjct: 204 ETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 263

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C  G  + A  L   M+      ++V YSA++D +C+ G    A  L  EM ++G  
Sbjct: 264 NGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG-- 321

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            +PNV TY  +I  FC  G   +A  +L  M      P+ +T + LI     EG L EA 
Sbjct: 322 IAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAE 381

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L D+++          Y+S++    +  R  +A+ +F  M +    PD +  + +I   
Sbjct: 382 KLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVY 437

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           C   +V EG  L  +I + G +++  +  ++ L+ G C  ++   A  L + M+
Sbjct: 438 CRAKRVDEGMQLLREISRRGLVANTTT--YNTLIHGFCEVDNLNAAQDLFQEMI 489



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 34/305 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R + +A  +LR M E ++ PD + +N +I    ++G +  A++L   M   
Sbjct: 332 MIDGFCSFGRWS-DAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHR 390

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVM---------------------------- 225
            ++PD +TY SMI GFC   R +DA  +F +M                            
Sbjct: 391 CIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLL 450

Query: 226 ---KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
               R G  AN   Y+ L+ G C + ++  A +L  EM   G    P+ +T   ++  FC
Sbjct: 451 REISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHG--VCPDTITCNILLYGFC 508

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
               ++EAL + + ++      + V  + +I G C    +DEA+ L   +   G      
Sbjct: 509 ENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQ 568

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y+ ++        + +A  LF KM  +G +PD    + +IR     G++ +   L  ++
Sbjct: 569 TYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 628

Query: 403 EKIGF 407
              GF
Sbjct: 629 RSNGF 633



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 14/246 (5%)

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           F    R + A  L++ M+      N+ +++ L+   C    +  +L   G++ K G    
Sbjct: 116 FVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG--FQ 173

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGIL----------DRMEALGCAPNRVTISTLIKGFCV 318
           P+VVT+ +++   C +  + EAL +           D+M  +G  P  +T +TLI G C+
Sbjct: 174 PDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLCL 233

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           EG + EA  L++K+V  G       Y ++V  + +    K A  L SKM  + +KPD + 
Sbjct: 234 EGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVI 293

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            S +I  LC  G   +   L+ ++ + G   +V +  ++ ++ G C      +A +L R 
Sbjct: 294 YSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFT--YNCMIDGFCSFGRWSDAQRLLRD 351

Query: 439 MLKKRI 444
           M+++ I
Sbjct: 352 MIEREI 357



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 124/283 (43%), Gaps = 32/283 (11%)

Query: 64  EVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSI-----IIDV- 116
           E+LHRC FP         + +       +H+ F  + A  M  +  +P +     IIDV 
Sbjct: 386 EMLHRCIFPDTVTYNSMIYGFC------KHNRF--DDAKHMFDLMASPDVVTFNTIIDVY 437

Query: 117 ------------VEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
                       +      G V +      +I   CE   L N A  + ++M    + PD
Sbjct: 438 CRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNL-NAAQDLFQEMISHGVCPD 496

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
           TI  N ++  FCE   +  A EL + + +  +  D + Y  +I G C   ++++A  LF 
Sbjct: 497 TITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFC 556

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            +  HG   ++  Y+ ++ G C   ++  A  L  +M+  G +  P+  TY ++I+    
Sbjct: 557 SLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE--PDNSTYNTLIRGCLK 614

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            G + +++ ++  M + G + +  TI  ++     +G LD+++
Sbjct: 615 AGEIDKSIELISEMRSNGFSGDAFTIK-MVADLITDGRLDKSF 656



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 12/196 (6%)

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           VI +F        A+ +  +ME      N  + + LIK FC    L  +     K+   G
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171

Query: 337 SVSSGGCYSSLVVELVRTKRLKEA----------EKLFSKMLASGVKPDGLACSVMIREL 386
                  +++L+  L    R+ EA            LF +M+  G+ P  +  + +I  L
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGL 231

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           CL G+VLE   L   +   G    +D   +  ++ G+C+   +  A  L   M +  I  
Sbjct: 232 CLEGRVLEAAALVNKMVGKGL--HIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKP 289

Query: 447 QGPYVDKIVEHLKKSG 462
                  I++ L K G
Sbjct: 290 DVVIYSAIIDRLCKDG 305


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 163/324 (50%), Gaps = 17/324 (5%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C  +  +M  + +LC   + A  A+ +LR+MP    RP+ + YN VI  FC +G + AA 
Sbjct: 40  CTTTFNIM--LRHLCSAGKPA-RALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAAL 92

Query: 185 ELMKGM---GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSAL 240
           ++M+ M   G I   P+  TY ++I G+C  GR+++A  +F  M   G      V Y+AL
Sbjct: 93  DIMREMRERGGI--APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNAL 150

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G C  G ++ AL     M + G   +  V TY  ++      G   EA  +++ M   
Sbjct: 151 IGGYCDQGKLDTALLYRDRMVERG--VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 208

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G AP+  T + LI G C EGN+ +A ++ + +   G  ++   Y+SL+  L +  +++E 
Sbjct: 209 GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQET 268

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           +KLF + +  G++PD +  + +I      G +   F +  ++EK     + D   ++ L+
Sbjct: 269 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI--APDDVTYNTLM 326

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
            GLC      EA KL   M K+ I
Sbjct: 327 RGLCLLGRVDEARKLIDEMTKRGI 350



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 141/266 (53%), Gaps = 6/266 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARL----ANEAMWVLRKMPEFDLRPDTIIYNN 169
           +D    Y++      V M    +NL   A        EA  ++ +M    L PD   YN 
Sbjct: 160 LDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNI 219

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I   C++G++  A E+ + M    +   ++TY S+I      G++++   LF    R G
Sbjct: 220 LINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRG 279

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              +LV Y+AL++     G+++RA E++GEMEK+    +P+ VTY ++++  C  G + E
Sbjct: 280 IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK--RIAPDDVTYNTLMRGLCLLGRVDE 337

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  ++D M   G  P+ VT +TLI G+ ++G++ +A ++ ++++  G   +   Y++L+ 
Sbjct: 338 ARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 397

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPD 375
            L +  +  +AE +  +M+ +G+ PD
Sbjct: 398 GLCKNGQGDDAENMVKEMVENGITPD 423



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 184/394 (46%), Gaps = 52/394 (13%)

Query: 86  LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM--KVIFNLC 139
           L+   R ++  YN      C   R++      +D++   +E G +   +     VI   C
Sbjct: 64  LRQMPRPNAVTYNTVIAGFCSRGRVQA----ALDIMREMRERGGIAPNQYTYGTVISGWC 119

Query: 140 EKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKGDM------------------ 180
           +  R+ +EA+ V  +M  + +++P+ ++YN +I  +C++G +                  
Sbjct: 120 KVGRV-DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMT 178

Query: 181 -----------------IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
                              A EL++ MG   L PD+ TY  +I G C  G ++ A  +F+
Sbjct: 179 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 238

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M R G  A +V Y++L+  + + G ++   +L  E  + G    P++V Y ++I     
Sbjct: 239 NMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRG--IRPDLVLYNALINSHST 296

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G +  A  I+  ME    AP+ VT +TL++G C+ G +DEA +LID++   G       
Sbjct: 297 SGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVT 356

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y++L+        +K+A ++ ++M+  G  P  L  + +I+ LC  GQ  +   + +++ 
Sbjct: 357 YNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMV 416

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLA 436
           + G   + D   +  L+ GL  ++  +++  +LA
Sbjct: 417 ENGI--TPDDSTYISLIEGLTTEDERAIDDERLA 448



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 45/255 (17%)

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  LF  M R         ++ +L  +C  G   RALELL +M +      PN VTY +V
Sbjct: 25  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR------PNAVTYNTV 78

Query: 278 IQIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           I  FC +G ++ AL I+  M E  G APN+ T  T+I G+C  G +DEA ++ D+++  G
Sbjct: 79  IAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG 138

Query: 337 SVSS---------GG---------------------------CYSSLVVELVRTKRLKEA 360
            V           GG                            Y+ LV  L    R  EA
Sbjct: 139 EVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEA 198

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +L  +M   G+ PD    +++I   C  G V +   ++E++ + G  ++V +  ++ L+
Sbjct: 199 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVT--YTSLI 256

Query: 421 LGLCRKNHSVEAAKL 435
             L +K    E  KL
Sbjct: 257 YALSKKGQVQETDKL 271


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 8/318 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           S+ +  V+   C K    +   W+ + M    + P+T  +N +I L C+ G +  A EL 
Sbjct: 20  SIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARELF 79

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M      P+  ++  +++G+C AG       L   M+R G + N V Y+ L+   C+ 
Sbjct: 80  DKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKE 139

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCA- 303
           G  + A +L+ EM K+G   SP+VVT+ + I   C  G + EA  I   M   E LG   
Sbjct: 140 GKTDDAEKLVDEMRKDG--LSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQ 197

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN +T + ++ GFC EG L+EA  L +K+    ++ +   Y+  ++ LVR  +L EA+ +
Sbjct: 198 PNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLV 257

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
             +M+  G++P+  + ++++  LC  G + +   L   +   G L   D+  ++ LL G 
Sbjct: 258 LKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLP--DTVTYTTLLHGY 315

Query: 424 CRKNHSVEAAKLARFMLK 441
           C      EA  + R M++
Sbjct: 316 CHTGKVSEANNVLREMMR 333



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 147/305 (48%), Gaps = 30/305 (9%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  VL++M +  + P+   YN V+   C+ G +  A  LM+ M    + PD +TY +++
Sbjct: 253 EAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLL 312

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C+ G++ +A  + + M R GC+ N    + LL  + + G +  A ELL +M ++G  
Sbjct: 313 HGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKG-- 370

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
              + VT   VI   C  G + +A+ I++ M   G A                GNL  +Y
Sbjct: 371 YVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSA--------------ALGNLGNSY 416

Query: 327 -QLIDKVVAGGSVSSGGC------YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
             L+D      S S   C      YS+++  L +  R+ EA+K F +M+   ++PD    
Sbjct: 417 IGLVDD-----SDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIY 471

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
            V I   C  G++   F + +D+EK G   ++ +  ++ L++GL  KN   E   L   M
Sbjct: 472 DVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQT--YNSLIMGLGSKNQIFEIYGLIDEM 529

Query: 440 LKKRI 444
            ++ +
Sbjct: 530 RERGV 534



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 157/348 (45%), Gaps = 45/348 (12%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+   L ++A  +  KMPE    P+   +  ++R +C  G      EL+  M  +   P
Sbjct: 66  LCDSGCL-DDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSP 124

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           + + Y ++I  FC  G+ +DA  L   M++ G + ++V ++A +  +C  G +  A  + 
Sbjct: 125 NKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIF 184

Query: 258 GEMEKEG--GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA---------------- 299
            +M+ +   G   PN++TY  ++  FC +GM++EA  + ++M+                 
Sbjct: 185 RDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLG 244

Query: 300 -------------------LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
                              +G  PN  + + ++ G C  G L +A  L+  + + G +  
Sbjct: 245 LVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPD 304

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+     T ++ EA  +  +M+  G  P+   C++++  L   G++ E   L +
Sbjct: 305 TVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQ 364

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
            + + G++  +D+   ++++ GLC      +A ++   M     W  G
Sbjct: 365 KMNEKGYV--IDTVTCNIVIDGLCNNGKLDKAIEIVNGM-----WTHG 405



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 160/354 (45%), Gaps = 29/354 (8%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--- 190
           ++++L ++ R++ EA  +L+KM E     DT+  N VI   C  G +  A E++ GM   
Sbjct: 346 LLYSLWKEGRIS-EAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTH 404

Query: 191 -------------GLID-------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
                        GL+D         PD+I+Y ++I G C AGR+ +A   F  M     
Sbjct: 405 GSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNL 464

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             +   Y   +   C+ G +  A  +L +MEK+G  C+  + TY S+I     K  + E 
Sbjct: 465 QPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKG--CNKTLQTYNSLIMGLGSKNQIFEI 522

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
            G++D M   G +P+    + ++   C  G + +A  ++D+++  G   +   +S L+  
Sbjct: 523 YGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKA 582

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             +       +++F   L      + L  S+   EL +GG+V++   L+E      F   
Sbjct: 583 FCKACDFSAVDEIFEIALNVCGHKEALY-SLTFNELLVGGEVVKAKELFETALDRSF--D 639

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464
           V + ++  L+  LC+     +A+ +   ++ K  W        +++ L K G++
Sbjct: 640 VGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNK 693



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 37/269 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  R+  EA     +M   +L+PD+ IY+  I  FC++G + +A  ++K M   
Sbjct: 439 IISGLCKAGRVG-EAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKK 497

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
                + TY S+I G  +  ++ +  GL   M+  G + ++  Y+ +L  +C  G ++ A
Sbjct: 498 GCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDA 557

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCG-------KGMMKEALGILDRMEAL-GCAPN 305
             +L EM ++G   SPN+ +++ +I+ FC          + + AL +    EAL     N
Sbjct: 558 PSVLDEMLQKG--ISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEALYSLTFN 615

Query: 306 RVTIS--------------------------TLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            + +                            LI   C +  LD+A  ++ K++  G   
Sbjct: 616 ELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWF 675

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKML 368
               +  ++  L +     EA++L  KM+
Sbjct: 676 DPASFMPVIDGLGKRGNKHEADELAEKMM 704



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 5/219 (2%)

Query: 116 VVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           V++  +++GC  +++    +I  L  K ++  E   ++ +M E  + PD  IYNNV+   
Sbjct: 490 VLKDMEKKGCNKTLQTYNSLIMGLGSKNQIF-EIYGLIDEMRERGVSPDVSIYNNVLSSL 548

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           CE G +  A  ++  M    + P+I ++  +IK FC A        +F++   + C    
Sbjct: 549 CEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEI-ALNVCGHKE 607

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             YS   + +   G + +A EL         D       Y  +I   C    + +A GIL
Sbjct: 608 ALYSLTFNELLVGGEVVKAKELFETALDRSFDVGN--FLYKDLIDHLCKDEKLDDASGIL 665

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
            ++   G   +  +   +I G    GN  EA +L +K++
Sbjct: 666 HKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKMM 704


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 163/365 (44%), Gaps = 8/365 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C M  ++    I  D++      G V S      + +   K  L  EA  +  K+ +  +
Sbjct: 302 CRMEELEMALRITHDMIRL----GFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 357

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+   YN +I   C+      AD L K M    L P+ +TY  +I   C  G +EDA  
Sbjct: 358 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALC 417

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF  M+  G    +  Y++L++G C+ GS++RA  LL  M KEG   +P   +Y+ +I  
Sbjct: 418 LFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG--LTPTAASYSPLIAG 475

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +   + +   M   G A N  T + LI GFC +  +DEA +L DK++    + +
Sbjct: 476 LCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPN 535

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              ++ ++        +++A +L+ +M+  G+KPD      +I  LCL   V +      
Sbjct: 536 EVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVA 595

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           D+E     + +++   + LL G  R+    E   L   M  + + L       IV    K
Sbjct: 596 DLENS--YAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALK 653

Query: 461 SGDEE 465
             D+E
Sbjct: 654 QHDKE 658



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 142/326 (43%), Gaps = 40/326 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +++ LC+  R+  EA+ V   M    +  D + Y  ++  FC   ++  A  +   M  +
Sbjct: 262 LMYGLCKNMRV-QEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRL 320

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P       MI        +E+A  L   +   G   N+ AY+AL+D +C+    + A
Sbjct: 321 GFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDA 380

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  EM   G    PN VTY  +I   C +GM+++AL + D+M   G        ++LI
Sbjct: 381 DRLFKEMAGRG--LEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLI 438

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT------------------- 354
            G+C +G+LD A  L+  +V  G   +   YS L+  L R                    
Sbjct: 439 NGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIA 498

Query: 355 ----------------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                           K++ EA +LF KM+ S V P+ +  +VMI   CL G + + F L
Sbjct: 499 WNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQL 558

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLC 424
           Y+ + ++G     D+  +  L+ GLC
Sbjct: 559 YDQMVEMGL--KPDNYTYRSLISGLC 582



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 161/372 (43%), Gaps = 40/372 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++  +  +A+ +  KM +  ++     YN++I  +C++G +  A  L+ GM   
Sbjct: 402 LIHALCKRG-MIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKE 460

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P   +Y  +I G C  G L     L + M   G A N   ++AL++G C+   M+ A
Sbjct: 461 GLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEA 520

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             L  +M     +  PN VT+  +I+ +C  G +++A  + D+M  +G  P+  T  +LI
Sbjct: 521 ARLFDKMIDS--NVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLI 578

Query: 314 KGFCV-----------------------------------EGNLDEAYQLIDKVVAGGSV 338
            G C+                                   EG   E Y L D++   G  
Sbjct: 579 SGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVK 638

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                ++ +V   ++    +++  LF +M   GVKPD +  + MI  L     +++    
Sbjct: 639 LDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNC 698

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
           ++ +   G+  S ++  H+VL+  LC+  +   A  L + ML   +       +  +++ 
Sbjct: 699 WDQMVVDGY--SPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYF 756

Query: 459 KKSGDEELITNL 470
              GD E   +L
Sbjct: 757 ATEGDMEKAKDL 768



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 144/345 (41%), Gaps = 36/345 (10%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +++F+L  K R    A  +  KM +  +  D  +Y   IR +CE  ++  A  L+  M  
Sbjct: 191 QILFSLV-KIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMES 249

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             +    + Y  ++ G C   R+++A  +  VM   G  A+ V Y  L+ G CR+  +E 
Sbjct: 250 EGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEM 309

Query: 253 ALELLGEMEKEG-----GDCS----------------------------PNVVTYTSVIQ 279
           AL +  +M + G      +CS                            PNV  Y ++I 
Sbjct: 310 ALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALID 369

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C      +A  +   M   G  PN VT + LI   C  G +++A  L DK+   G   
Sbjct: 370 KLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKV 429

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+SL+    +   L  A  L S M+  G+ P   + S +I  LC  G +     L+
Sbjct: 430 TVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELH 489

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            ++ + G   + ++   + L+ G C+     EAA+L   M+   +
Sbjct: 490 REMAERGI--AWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNV 532



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 145/293 (49%), Gaps = 10/293 (3%)

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           IR F    D+   D++++    +D Y     Y + I+ +C +  L+ A GL   M+  G 
Sbjct: 199 IRQFALARDLF--DKMLQSGVHLDEY----VYTAGIRAYCESRNLDGARGLVVRMESEGV 252

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
            A+ V Y+ L+ G+C+   ++ A+E+   M   G   + + VTY +++  FC    ++ A
Sbjct: 253 KASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIG--VTADEVTYRTLVYGFCRMEELEMA 310

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           L I   M  LG  P+    S +I     +  ++EA+ L  K+   G V +   Y++L+ +
Sbjct: 311 LRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDK 370

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           L + +R  +A++LF +M   G++P+ +  +++I  LC  G + +  CL++ +   G   +
Sbjct: 371 LCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVT 430

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           V    ++ L+ G C++     A  L   M+K+ +         ++  L ++GD
Sbjct: 431 VYP--YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 481



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 169/383 (44%), Gaps = 20/383 (5%)

Query: 44  NNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQM---GIRFFIWAALQSSYRHSSFMYNRA 100
           +N+     T    ++  C++  + + F    QM   G++         +Y + S + +  
Sbjct: 530 SNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLK-------PDNYTYRSLI-SGL 581

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C  S + +    + D+  +Y     + +  +  +++    + R   E   +  +M    +
Sbjct: 582 CLTSGVSKANEFVADLENSY---AVLNNFSLTALLYGFFREGRFT-ETYHLWDEMAVRGV 637

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           + D + +  ++    ++ D   +  L + M    + PD I Y  MI        +  A  
Sbjct: 638 KLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 697

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            +  M   G + N V ++ L++ +C+ G +  A  L  EM    G+  PN  TY   +  
Sbjct: 698 CWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEML--AGNVLPNKFTYNCFLDY 755

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           F  +G M++A  +   M   G   + V+ + LIKG C  G + EA  L+ K+   G    
Sbjct: 756 FATEGDMEKAKDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPD 814

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              YS+++ EL +   + +A +L+++ML  G+KPD +A ++ IR   + G+  +   +Y 
Sbjct: 815 CISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYT 874

Query: 401 DIEKIGFLSSVDSDIHSVLLLGL 423
           ++ + G   + D+  +  LL G+
Sbjct: 875 NMIRSGVQPNWDT--YRALLSGI 895



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 3/124 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  ++  EA+ ++ K+ E    PD I Y+ +I   C+ GD+  A EL   M   
Sbjct: 786 LIKGLCKAGKI-QEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYK 844

Query: 194 DLYPDIITYVSMIKGFCNA-GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
            L PD++ Y   I+ +CN  G  + A G++  M R G   N   Y ALL GI  + S  +
Sbjct: 845 GLKPDVVAYNIFIR-WCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMVSKGQ 903

Query: 253 ALEL 256
           AL L
Sbjct: 904 ALLL 907


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 162/384 (42%), Gaps = 54/384 (14%)

Query: 77  GIRFFIWAALQSSYRHSSFMYN------------RACEMSRIKQNPSIIID-----VVEA 119
            + FF W   Q  + H+   Y             RA E  R     S +       V+  
Sbjct: 86  ALNFFKWIHYQHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCVSSHEARFVLNL 145

Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
                  +SV     +F +  +  L +E   + + M    + P+ I +N ++   C+ G+
Sbjct: 146 LTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGN 205

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           ++ A     G+       D  TY S+I G+C    L DA  +F++M + GC  N V+Y+ 
Sbjct: 206 VVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTN 265

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+ G C +G ++ ALEL  +M+++G  C P+V TYT ++  FC  G   EAL   + M  
Sbjct: 266 LIHGFCEVGKIDEALELFFQMKEDG--CFPDVPTYTVLVAAFCEVGKETEALKFFEEMVE 323

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS---------GGC------- 343
            G  PN  T + LI  FC  G +DE  +++  ++  G VSS         G C       
Sbjct: 324 NGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMED 383

Query: 344 -------------------YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
                              Y+ L+    R K +  A  L +KM  + + P+ +  + +I 
Sbjct: 384 AICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIH 443

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFL 408
            LC    V   + L+  + K GF+
Sbjct: 444 GLCKARVVDSAWRLHHLMIKDGFV 467



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 151/299 (50%), Gaps = 4/299 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E+G V SV     + +   K  +  +A+ VL  M    + P++  YN +I  FC K  M 
Sbjct: 358 EKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMD 417

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  L+  M    L P+++TY ++I G C A  ++ A  L  +M + G   +   + A +
Sbjct: 418 RAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFI 477

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           D +C++G +E+A ++   ++++  +   N   YT++I  +C      +A  +  RM   G
Sbjct: 478 DCLCKMGKVEQAHQVFESLKEKHAE--ANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEG 535

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
           C PN +T + L+ G   EG +++A  L+D +    +  +   Y+ L+ E++R      A 
Sbjct: 536 CFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRAN 595

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
               +M++SG +P+ +  +  I+  C  G++LE   +   I++ G L  +DS I+ VL+
Sbjct: 596 MFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGIL--LDSFIYDVLV 652



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 147/332 (44%), Gaps = 31/332 (9%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KAR+ + A  +   M +    PD   +   I   C+ G +  A ++ + +   
Sbjct: 441 LIHGLC-KARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEK 499

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
               +   Y ++I G+C A +  DA  LFK M   GC  N + ++ LLDG+ + G +E A
Sbjct: 500 HAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDA 559

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + L+  M K   D  P V TYT +I+    +     A   LD+M + GC PN VT +  I
Sbjct: 560 MSLVDVMGK--FDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFI 617

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           K +C +G L EA +++ K+   G +     Y  LV       +L  A  +  +M  +G +
Sbjct: 618 KAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCE 677

Query: 374 PDGLACSVMIRELCLGGQVLEGF--------------------------CLYEDIEKIGF 407
           P     S++++ L       EG                            L+E + + G 
Sbjct: 678 PSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGC 737

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           + +V++  +S L+ GLC+  H   A +L   M
Sbjct: 738 VPNVNT--YSKLIKGLCKVEHLSLAFRLFNHM 767



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 143/345 (41%), Gaps = 30/345 (8%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           EGC  +     V+ +   K     +AM ++  M +FD +P    Y  +I     + D   
Sbjct: 534 EGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDR 593

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A+  +  M      P+++TY + IK +C  GRL +A  +   +K  G   +   Y  L++
Sbjct: 594 ANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVN 653

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG---------- 292
               +G ++ A  +L  M   G  C P+  TY+ +++    +   KE +G          
Sbjct: 654 AYGCIGQLDSAFGVLIRMFDTG--CEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISV 711

Query: 293 ----------------ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
                           + ++M   GC PN  T S LIKG C   +L  A++L + +   G
Sbjct: 712 DNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESG 771

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
              S   ++SL+    +    +EA +L   M+         +  +++  L   G   +  
Sbjct: 772 ISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAE 831

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            ++  +   G+  + D  +  VLL GL RK +  E ++L   M K
Sbjct: 832 EIFRSLLSCGY--NYDEVVWKVLLDGLVRKGYVDECSQLRDIMEK 874



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 130/300 (43%), Gaps = 30/300 (10%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A   L +M     +P+ + Y   I+ +C +G ++ A+E++  +    +  D   Y  +
Sbjct: 592 DRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVL 651

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD----------------------- 242
           +  +   G+L+ A G+   M   GC  +   YS LL                        
Sbjct: 652 VNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISV 711

Query: 243 ---GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
               I ++   E    L  +M ++G  C PNV TY+ +I+  C    +  A  + + M+ 
Sbjct: 712 DNANIWKIADFEIITMLFEKMVEQG--CVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKE 769

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G +P+    ++L+   C  G  +EA +L+D ++    ++    Y  LV  L      ++
Sbjct: 770 SGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEK 829

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           AE++F  +L+ G   D +   V++  L   G V E   L + +EK G    + SD H++L
Sbjct: 830 AEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEKTG--CRLHSDTHTML 887



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 123/286 (43%), Gaps = 15/286 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   R+ +   +++ +    KEEG ++   +  V+ N        + A  VL +M +   
Sbjct: 621 CRQGRLLEAEEMVVKI----KEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGC 676

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P    Y+ +++       +I      +GMGL DL    I+  +           E    
Sbjct: 677 EPSRQTYSILLK------HLIFEKYNKEGMGL-DLNSTNISVDN--ANIWKIADFEIITM 727

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           LF+ M   GC  N+  YS L+ G+C++  +  A  L   M++ G   SP+   + S++  
Sbjct: 728 LFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESG--ISPSENIHNSLLSS 785

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  GM +EAL +LD M       +  +   L+ G   +GN ++A ++   +++ G    
Sbjct: 786 CCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYD 845

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
              +  L+  LVR   + E  +L   M  +G +      +++ +EL
Sbjct: 846 EVVWKVLLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHTMLSQEL 891


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 219/461 (47%), Gaps = 45/461 (9%)

Query: 22  FALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFF 81
           F L F   + ++ F T +     ++ KTL ++  ++   C + +L  C            
Sbjct: 79  FNLLFGIVAKSQHFATAI-----SLIKTLHSLGYEIADVCTLNILINCL----------- 122

Query: 82  IWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141
                    R ++  +     M++I   P+++   +       C+V+         LC+ 
Sbjct: 123 ------CRLRKTTLGFAVLGLMTKIGLEPTLV--TLNTIANGLCIVN--------GLCKI 166

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
              +  A+  L+KM + +L P+ ++YN ++   C++G +  A  L   MG++++ P+++T
Sbjct: 167 GDTSG-ALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVT 225

Query: 202 YVSMIKGFCN-AGRLEDACGLFKVM-KRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           Y  +I+G C   G   +  GLF  M    G   ++  +S L++G C+ G + RA  ++G 
Sbjct: 226 YNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRAESMVGF 285

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM--EALGCAPNRVTISTLIKGFC 317
           M + G +   NVVTY S+I  +C +  M+EA+ + D M  E  GC P+ VT ++LI G+C
Sbjct: 286 MIRIGVEL--NVVTYNSLISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIHGWC 343

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
               +++A  L+ ++V  G       ++SL+       +   A++LF  M   G  P   
Sbjct: 344 KVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQGQVPILQ 403

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
            C+V++  L       E   L+  +EK G    +D  I++++L G+C+     +A KL  
Sbjct: 404 TCAVVLDGLYKCWLDSEAMTLFRAMEKSGL--DLDIVIYNIMLDGMCKMGKLNDARKLLS 461

Query: 438 FMLKKRIWLQGPYVDKIVEHLKKSG----DEELITNLPKIG 474
           F+L K + +     + +++ L + G     EEL+  + + G
Sbjct: 462 FVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENG 502



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 2/225 (0%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + YN++I  +C+   +  A  L+  M    L PD+ T+ S+I GF   G+   A  L
Sbjct: 330 PSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPLAAKEL 389

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  MK  G    L   + +LDG+ +      A+ L   MEK G D   ++V Y  ++   
Sbjct: 390 FITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDL--DIVIYNIMLDGM 447

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G + +A  +L  +   G   +  T + +IKG C EG LD+A +L+ K+   G   + 
Sbjct: 448 CKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGCPPNK 507

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
             Y+  V  L+R   +  + K    M   G   D     ++IR L
Sbjct: 508 CSYNVFVQGLLRKYDISRSRKYLQIMKDKGFPVDATTAELLIRFL 552



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 76/144 (52%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K++G V  ++   V+ +   K  L +EAM + R M +  L  D +IYN ++   C+ G +
Sbjct: 394 KDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGKL 453

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A +L+  + +  L  D  T+  MIKG C  G L+DA  L + MK +GC  N  +Y+  
Sbjct: 454 NDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVF 513

Query: 241 LDGICRLGSMERALELLGEMEKEG 264
           + G+ R   + R+ + L  M+ +G
Sbjct: 514 VQGLLRKYDISRSRKYLQIMKDKG 537


>gi|356510096|ref|XP_003523776.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g18475-like [Glycine max]
          Length = 640

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 139/266 (52%), Gaps = 5/266 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMIKGFCNAGRLEDACG 220
           P+   Y+  +   C  G +  A EL + M   D + PD +TY  +I  FC  G+ + A  
Sbjct: 361 PNLFTYSTFMDGLCRNGRVKEAFELFEEMVSRDHIVPDPLTYNVLINEFCRRGKPDRARN 420

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + + MK + C  N+  YSAL+DG+C++G +E A  +L EM+  G    P+ VTYTS+I  
Sbjct: 421 VIEFMKSNRCYPNVYNYSALVDGLCKVGKLEDAKGVLAEMK--GSGLKPDTVTYTSLINF 478

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G + EA+G+L  ++   C  + VT + ++ G C E   +EA  +++K+   G   +
Sbjct: 479 LCRNGQIGEAMGLLKEIKENTCQADTVTFNVILGGLCREDRFEEALDMLEKLPQQGVYLN 538

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
            G Y  ++  L +   LK+A++L   ML+ G +P     + ++  LC  G V +      
Sbjct: 539 KGSYRIVLNSLTQKCELKKAKELLGLMLSRGFRPHYATSNELLVCLCKAGMVDDAAVALF 598

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRK 426
            + ++GF   ++S    VL+  +CR+
Sbjct: 599 YLVEMGFQPGLES--WEVLIGLICRE 622



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 131/266 (49%), Gaps = 4/266 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           LC   R+  EA  +  +M   D + PD + YN +I  FC +G    A  +++ M     Y
Sbjct: 373 LCRNGRV-KEAFELFEEMVSRDHIVPDPLTYNVLINEFCRRGKPDRARNVIEFMKSNRCY 431

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P++  Y +++ G C  G+LEDA G+   MK  G   + V Y++L++ +CR G +  A+ L
Sbjct: 432 PNVYNYSALVDGLCKVGKLEDAKGVLAEMKGSGLKPDTVTYTSLINFLCRNGQIGEAMGL 491

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L E+++    C  + VT+  ++   C +   +EAL +L+++   G   N+ +   ++   
Sbjct: 492 LKEIKE--NTCQADTVTFNVILGGLCREDRFEEALDMLEKLPQQGVYLNKGSYRIVLNSL 549

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
             +  L +A +L+  +++ G        + L+V L +   + +A      ++  G +P  
Sbjct: 550 TQKCELKKAKELLGLMLSRGFRPHYATSNELLVCLCKAGMVDDAAVALFYLVEMGFQPGL 609

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDI 402
            +  V+I  +C   ++L  F L  ++
Sbjct: 610 ESWEVLIGLICRERKLLYVFELLNEL 635



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 106/229 (46%), Gaps = 4/229 (1%)

Query: 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           P    +V+E  K   C  +V     + + LC+  +L  +A  VL +M    L+PDT+ Y 
Sbjct: 415 PDRARNVIEFMKSNRCYPNVYNYSALVDGLCKVGKL-EDAKGVLAEMKGSGLKPDTVTYT 473

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           ++I   C  G +  A  L+K +       D +T+  ++ G C   R E+A  + + + + 
Sbjct: 474 SLINFLCRNGQIGEAMGLLKEIKENTCQADTVTFNVILGGLCREDRFEEALDMLEKLPQQ 533

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   N  +Y  +L+ + +   +++A ELLG M   G    P+  T   ++   C  GM+ 
Sbjct: 534 GVYLNKGSYRIVLNSLTQKCELKKAKELLGLMLSRGF--RPHYATSNELLVCLCKAGMVD 591

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +A   L  +  +G  P   +   LI   C E  L   ++L++++V   S
Sbjct: 592 DAAVALFYLVEMGFQPGLESWEVLIGLICRERKLLYVFELLNELVITNS 640



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 106/241 (43%), Gaps = 23/241 (9%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE---- 216
           +P+T ++N +++  C+ GD+ +A E++K M    L   ++  V+    FC+  +L     
Sbjct: 187 KPNTCVFNILVKYHCKNGDLDSAFEVVKEMRNSKL--SLLELVAFSAVFCHLSQLRYSLS 244

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSM---ERALELLGEMEKEGG-DCSPNVV 272
            +  L ++++     +  V     L     L ++   +    L   +  +   D  P+V+
Sbjct: 245 HSVQLTQILEIQ--VSKSVVPQPFLSTCLSLQAIVFHDLNTNLKSSIPVQWSFDDQPSVL 302

Query: 273 TYTSVIQIFCGKGMMKEA-LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
                +  F       E  L +   +  L C+     IS  +   C   +    + L D 
Sbjct: 303 VID--LHFFVLHHHSVEVYLYLWSNLLCLSCS----GISLFLSCLC---DYQNHHFLTDG 353

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA-SGVKPDGLACSVMIRELCLGG 390
           V+AG S  +   YS+ +  L R  R+KEA +LF +M++   + PD L  +V+I E C  G
Sbjct: 354 VLAGLSYPNLFTYSTFMDGLCRNGRVKEAFELFEEMVSRDHIVPDPLTYNVLINEFCRRG 413

Query: 391 Q 391
           +
Sbjct: 414 K 414


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 178/415 (42%), Gaps = 91/415 (21%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C M ++  N ++I D V                 + ++  K   A++A+  L++  +   
Sbjct: 361 CLMEKMVWNSNLIPDQV-------------TYNTLIHMLSKHGHADDALAFLKEAQDKGF 407

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-----PDIITYVSMIKGFCNAGRL 215
             D + Y+ ++  FC+KG M  A  L     +ID+Y     PD++TY +++ GFC  GR+
Sbjct: 408 HIDKVGYSAIVHSFCQKGRMDEAKSL-----VIDMYSRGCNPDVVTYTAIVDGFCRLGRI 462

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           ++A  + + M +HGC  N V+Y+ALL+G+C  G    A E++   E+     +PN +TY 
Sbjct: 463 DEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWW--TPNAITYG 520

Query: 276 SV-----------------------------------IQIFCGKGMMKEALGILDRMEAL 300
           +V                                   IQ  C    + EA   L+     
Sbjct: 521 AVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNK 580

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           GCA N V  +T+I GFC  G+++ A  ++D +   G       Y++L   L +  RL EA
Sbjct: 581 GCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEA 640

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGG-----------------------QVLEGFC 397
            +L  KML+ G+ P  +    +I      G                       QV+E  C
Sbjct: 641 AELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLKRQPFRTVYNQVIEKLC 700

Query: 398 LYEDIEKIGFL--------SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            + ++E+   L        S VD++   VL+    +K  ++ A K+A  M ++ +
Sbjct: 701 DFGNLEEAEKLLGKVLRTASKVDANTCHVLMESYLKKGVAISAYKVACRMFRRNL 755



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 189/404 (46%), Gaps = 12/404 (2%)

Query: 42  NPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRAC 101
           NPN  E  L  +   L    V  VL     +  ++ + FF WA  Q  Y H   +Y    
Sbjct: 151 NPN-FEGRLRHLLRSLKPPLVCAVLRS--QADERVALNFFYWADRQWRYSHHPVVYYTML 207

Query: 102 EM---SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           ++   +++ Q    ++ ++     E    +   + V ++   K R    A+ VL  M + 
Sbjct: 208 DVLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMVSYSRAGKLR---NALRVLTLMQKA 264

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
            + P   I N  I +  + G +  A + ++ M +  + PDI+TY S+IKG+C+  R+EDA
Sbjct: 265 GVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDA 324

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L   +   GC  + V+Y  ++  +C+   +E    L+ +M     +  P+ VTY ++I
Sbjct: 325 LELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKM-VWNSNLIPDQVTYNTLI 383

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
            +    G   +AL  L   +  G   ++V  S ++  FC +G +DEA  L+  + + G  
Sbjct: 384 HMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCN 443

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y+++V    R  R+ EA+K+  +M   G KP+ ++ + ++  LC  G+ LE   +
Sbjct: 444 PDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREM 503

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               E+  +  + ++  +  ++ GL R+    EA  L R M++K
Sbjct: 504 INVSEEHWW--TPNAITYGAVMHGLRREGKLSEACDLTREMVEK 545



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 164/343 (47%), Gaps = 9/343 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C+++RI+      ++++     +GC    V    V+  LC++ ++      + + +   +
Sbjct: 316 CDLNRIED----ALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSN 371

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L PD + YN +I +  + G    A   +K       + D + Y +++  FC  GR+++A 
Sbjct: 372 LIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAK 431

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M   GC  ++V Y+A++DG CRLG ++ A ++L +M K G  C PN V+YT+++ 
Sbjct: 432 SLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHG--CKPNTVSYTALLN 489

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G   EA  +++  E     PN +T   ++ G   EG L EA  L  ++V  G   
Sbjct: 490 GLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFP 549

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +    + L+  L + +++ EA+K   + L  G   + +  + +I   C  G +     + 
Sbjct: 550 TPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVL 609

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +D+   G     D+  ++ L   L +K    EAA+L   ML K
Sbjct: 610 DDMYLSG--KHPDAVTYTALFDALGKKGRLDEAAELIVKMLSK 650



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 151/364 (41%), Gaps = 76/364 (20%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+  R+ +  S++ID+       GC   V     I +  C   R+ +EA  +L++M +  
Sbjct: 422 CQKGRMDEAKSLVIDMYS----RGCNPDVVTYTAIVDGFCRLGRI-DEAKKILQQMYKHG 476

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            +P+T+ Y  ++   C  G  + A E++         P+ ITY +++ G    G+L +AC
Sbjct: 477 CKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEAC 536

Query: 220 GLFKVM----------------------------KRH-------GCAANLVAYSALLDGI 244
            L + M                            K++       GCA N+V ++ ++ G 
Sbjct: 537 DLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGF 596

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C++G ME AL +L +M   G    P+ VTYT++      KG + EA  ++ +M + G  P
Sbjct: 597 CQIGDMEAALSVLDDMYLSGK--HPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDP 654

Query: 305 NRVTISTLIKGF---------------------------------CVEGNLDEAYQLIDK 331
             VT  ++I  +                                 C  GNL+EA +L+ K
Sbjct: 655 TPVTYRSVIHRYSQWGRVDDMLNLLEKMLKRQPFRTVYNQVIEKLCDFGNLEEAEKLLGK 714

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           V+   S         L+   ++      A K+  +M    + PD   C  + ++L L G+
Sbjct: 715 VLRTASKVDANTCHVLMESYLKKGVAISAYKVACRMFRRNLTPDLKLCEKVSKKLVLDGK 774

Query: 392 VLEG 395
           ++E 
Sbjct: 775 LVEA 778


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 170/349 (48%), Gaps = 11/349 (3%)

Query: 98  NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157
           N  C   R+ +  S++   V A    GC        V  +   KA   ++A  +L+KM E
Sbjct: 15  NGLCREKRLDEAFSVLERAVRA----GCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDE 70

Query: 158 FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
               P T+ Y  ++    + G +  A  +++ M      P + TY  +I G   AGR+E+
Sbjct: 71  KKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEE 130

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE--MEKEGGDCSPNVVTYT 275
           A  +F  M  +GC  +   Y+AL+ G+C+ G  E A  L  E    K      P+VVTYT
Sbjct: 131 ARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYT 190

Query: 276 SVIQIFCGKGMMKEALGILDRMEAL--GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           S+I   C  G + EA  + D  EA+  G  P+ VT +++I G C  G ++E  +   ++ 
Sbjct: 191 SLIDGLCKAGRILEARQVFDD-EAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMR 249

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G       Y++L+   ++ K + +A +++ +ML SG     +  ++++  LC  G+V 
Sbjct: 250 NRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVA 309

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           E +  +  +E+ G +++V +  +S L+ G C + +   A +L R ML +
Sbjct: 310 EAYATFLAMEERGCVATVVT--YSALMDGFCSEGNVSAAVELFRRMLDR 356



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 168/349 (48%), Gaps = 14/349 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  RI +   +  D  EA +      +V    +I  LC+  R+  E      +M     
Sbjct: 197 CKAGRILEARQVFDD--EAVERGFIPDAVTYTSIIDGLCKLGRV-EEGCERFHEMRNRGY 253

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD + Y  +I  F +   +  A  + + M         +TY  ++ G C AGR+ +A  
Sbjct: 254 EPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYA 313

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F  M+  GC A +V YSAL+DG C  G++  A+EL   M   G  C PN+V+Y  +I+ 
Sbjct: 314 TFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG--CEPNLVSYNIIIRG 371

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE-GNLDEAYQLIDKVVAGGSVS 339
            C  G + +A    +++      P+  T +  + G C     + +  +L + +V+ G+  
Sbjct: 372 LCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSP 431

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   YS L+  + R   L+ A ++F +M++ GV PD +  + +IR LC+ G+V E   ++
Sbjct: 432 NLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVF 491

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
            ++E+    S+ D+  +  LL GL R    +E A+L  F +K    LQG
Sbjct: 492 RELER---RSAPDAWSYWSLLDGLSR-CERMEEARLLSFHMK----LQG 532



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 10/309 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC + RL +EA  VL +       PD + YN  I   C+   +  A +L+K
Sbjct: 8   VAFTVVINGLCREKRL-DEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLK 66

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P  +TY +++ G   AGRL++A  + + M   G +  L  Y+ ++DG+ + G
Sbjct: 67  KMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAG 126

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD----RMEALGCAP 304
            +E A  +  +M   G  C P+   YT++I+  C  G  +EA  +      R       P
Sbjct: 127 RVEEARRIFVDM--LGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVP 184

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLI-DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           + VT ++LI G C  G + EA Q+  D+ V  G +     Y+S++  L +  R++E  + 
Sbjct: 185 DVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCER 244

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F +M   G +PD +  + +I        + +   +Y  + + G  + V +  ++++L GL
Sbjct: 245 FHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSG--TVVSTVTYNIILDGL 302

Query: 424 CRKNHSVEA 432
           C+     EA
Sbjct: 303 CKAGRVAEA 311



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 148/306 (48%), Gaps = 9/306 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD + +  VI   C +  +  A  +++        PD +TY   I G C A R++DA  L
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            K M    C    V Y+AL+DG+ + G ++ A+ +L +M ++G   SP + TYT VI   
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGN--SPTLKTYTVVIDGL 122

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA----GGS 337
              G ++EA  I   M   GC P+    + LIKG C  G  +EAY L  +  A      +
Sbjct: 123 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATA 182

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLF-SKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
           V     Y+SL+  L +  R+ EA ++F  + +  G  PD +  + +I  LC  G+V EG 
Sbjct: 183 VPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGC 242

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456
             + ++   G+    D+  ++ L+ G  +     +A ++ R ML+    +     + I++
Sbjct: 243 ERFHEMRNRGY--EPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILD 300

Query: 457 HLKKSG 462
            L K+G
Sbjct: 301 GLCKAG 306



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 112/208 (53%), Gaps = 4/208 (1%)

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           C+ ++VA++ +++G+CR   ++ A  +L    + G  C P+ VTY   I   C    + +
Sbjct: 3   CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAG--CEPDYVTYNVFIDGLCKAERVDD 60

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  +L +M+   C P  VT + L+ G    G LDEA  +++++V  G+  +   Y+ ++ 
Sbjct: 61  AFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVID 120

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L +  R++EA ++F  ML +G +PD    + +I+ LC  G+  E + LY++       +
Sbjct: 121 GLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHA 180

Query: 410 SVDSDI--HSVLLLGLCRKNHSVEAAKL 435
           +   D+  ++ L+ GLC+    +EA ++
Sbjct: 181 TAVPDVVTYTSLIDGLCKAGRILEARQV 208



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 116/265 (43%), Gaps = 47/265 (17%)

Query: 86  LQSSYRHSSFMYN----RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCE 140
           LQS    S+  YN      C+  R+ +  +  +    A +E GCV +V     + +  C 
Sbjct: 284 LQSGTVVSTVTYNIILDGLCKAGRVAEAYATFL----AMEERGCVATVVTYSALMDGFCS 339

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +  + + A+ + R+M +    P+ + YN +IR  C  G +  A    + +    L PD+ 
Sbjct: 340 EGNV-SAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVY 398

Query: 201 TYVSMIKGFCNA-GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           T+ + + G C     + D   LF+ M   G + NL +YS L+DGICR G +E ALE+  E
Sbjct: 399 TFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFRE 458

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL------------------------D 295
           M   G   +P+VV + ++I+  C  G + EAL +                         +
Sbjct: 459 MVSRG--VAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLLDGLSRCE 516

Query: 296 RMEAL----------GCAPNRVTIS 310
           RME            GCAP    ++
Sbjct: 517 RMEEARLLSFHMKLQGCAPRHYDLT 541


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 175/381 (45%), Gaps = 11/381 (2%)

Query: 33  ERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSY 90
           ERF   L+  K   + EK L  +  K+D   V EV+        +M  +FF WAA + +Y
Sbjct: 58  ERFIRILKIFKWGPDAEKALEVLMLKVDHWLVREVMKTDVGVNVKM--QFFRWAAKKRNY 115

Query: 91  RH--SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
            H  S++M    C +  ++Q   +   + E  +   CVV+   +  I  +   A++ ++A
Sbjct: 116 EHDTSTYMALIRC-LEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKA 174

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIK 207
           + +  ++     +P    YN++I +   +G      EL   M      +PD +TY ++I 
Sbjct: 175 VAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALIS 234

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            FC  GR + A  L   MK +G       Y+ L+    +L ++  AL L  EM  +   C
Sbjct: 235 AFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQY--C 292

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+V TYT +I+     G   EA      M   GC P+ V I+ +I      G LD+A +
Sbjct: 293 RPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVK 352

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           L +++     + S   Y++++  L  +K R+ E    F +M  SG+ P     S++I   
Sbjct: 353 LFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGF 412

Query: 387 CLGGQVLEGFCLYEDIEKIGF 407
           C   +  +   L E++++ GF
Sbjct: 413 CKTNRTEKAMMLLEEMDEKGF 433



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 156/313 (49%), Gaps = 6/313 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    +I   C+  R  + A+ +L +M +  ++P   IY  +I LF +  ++  A  L 
Sbjct: 226 TVTYSALISAFCKLGR-QDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLF 284

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M      PD+ TY  +I+G   AGR ++A   F  M+R GC  + V  + +++ + + 
Sbjct: 285 EEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKA 344

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEALGCAPNR 306
           G ++ A++L  EM      C P+VVTY ++I+ +F  K  + E     +RM+  G +P+ 
Sbjct: 345 GRLDDAVKLFEEMGTL--QCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSP 402

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
            T S LI GFC     ++A  L++++   G       Y SL+  L + KR   A +LF +
Sbjct: 403 FTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQE 462

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +  +         +VMI+ L   G++ +   L++++ K+G   +V +  ++ L+ GL R 
Sbjct: 463 LKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYA--YNALMSGLARA 520

Query: 427 NHSVEAAKLARFM 439
               EA    R M
Sbjct: 521 GMLDEALTTMRRM 533



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 142/322 (44%), Gaps = 36/322 (11%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA   +EA     +M     RPDT++ NN+I    + G +  A +L + MG +   P ++
Sbjct: 308 KAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVV 367

Query: 201 TYVSMIKG-FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           TY ++IK  F +  R+ +    F+ MK  G + +   YS L+DG C+    E+A+ LL E
Sbjct: 368 TYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEE 427

Query: 260 MEKEGGDCSP---------------------------------NVVTYTSVIQIFCGKGM 286
           M+++G    P                                 +   Y  +I+     G 
Sbjct: 428 MDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGR 487

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + +A+ + D M  LGC PN    + L+ G    G LDEA   + ++   G +     Y+ 
Sbjct: 488 LDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNI 547

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++  L +T     A ++ S M  S +KPD ++ + ++  +   G   E   L +++  +G
Sbjct: 548 ILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLG 607

Query: 407 FLSSVDSDIHSVLLLGLCRKNH 428
           F    D   +S +L  + + +H
Sbjct: 608 F--EYDLITYSSILEAIGKVDH 627



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 138/313 (44%), Gaps = 5/313 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I ++   K+ G   + K+  ++  L  K    + A+ +  +M     RPD   Y  +IR 
Sbjct: 246 IRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRG 305

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             + G    A      M      PD +   +MI     AGRL+DA  LF+ M    C  +
Sbjct: 306 LGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPS 365

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEK-EGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +V Y+ ++  +    S  R  E+    E+ +G   SP+  TY+ +I  FC     ++A+ 
Sbjct: 366 VVTYNTIIKAL--FESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMM 423

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L+ M+  G  P      +LI         D A++L  ++      SS   Y+ ++  L 
Sbjct: 424 LLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLG 483

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  RL +A  LF +M   G  P+  A + ++  L   G + E       +++ G +  ++
Sbjct: 484 KAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDIN 543

Query: 413 SDIHSVLLLGLCR 425
           S  ++++L GL +
Sbjct: 544 S--YNIILNGLAK 554



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 67/134 (50%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++ +   + GC  +V     + +   +A + +EA+  +R+M E    PD   YN ++  
Sbjct: 492 VNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNG 551

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             + G    A E++  M    + PD ++Y +++    +AG  E+A  L K M   G   +
Sbjct: 552 LAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYD 611

Query: 234 LVAYSALLDGICRL 247
           L+ YS++L+ I ++
Sbjct: 612 LITYSSILEAIGKV 625



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 2/168 (1%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           I  ++ +  KE     S ++  V+     KA   ++A+ +  +M +    P+   YN ++
Sbjct: 455 IAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALM 514

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
                 G +  A   M+ M      PDI +Y  ++ G    G    A  +   MK+    
Sbjct: 515 SGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIK 574

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            + V+Y+ +L  +   G  E A +L+ EM   G +   +++TY+S+++
Sbjct: 575 PDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEY--DLITYSSILE 620


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 148/312 (47%), Gaps = 12/312 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+ +RI +  +I +D+           +V +   + +   ++  A EA+   +++    L
Sbjct: 289 CQANRITEAKNIFLDM----PRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGL 344

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           RPD    + V+R  C+ G M  A   ++ M    +  +   Y  +I  +C +G L++A  
Sbjct: 345 RPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALV 404

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
               M   G   N+V YS+L+DG  + G ME A+ +  EM  +G    PNVVTYT++I  
Sbjct: 405 TCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKG--VEPNVVTYTALIHG 462

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI------DKVVA 334
               G M  A  +   ME  G   N +T+S L+ G C E  + +A + I       K   
Sbjct: 463 HAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEK 522

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
             S+++   Y +L+  L    +  EA   FS M  SG+ PD    +++IR LC+ G VL 
Sbjct: 523 NPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLN 582

Query: 395 GFCLYEDIEKIG 406
              LY D+ K+G
Sbjct: 583 AMMLYADMVKVG 594



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 151/307 (49%), Gaps = 5/307 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LCE+  +  +A  +  +M E  +RP+   YN ++    ++ ++  A     
Sbjct: 209 VTYTTMICALCEEDCIG-DAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYY 267

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +    L P+ + + ++I G C A R+ +A  +F  M R+  A  +  Y++L+ G  R G
Sbjct: 268 DLLKCGLVPNDVIFTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSG 327

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
             + AL    E+ ++G    P+  T + V++  C  G M+ A   L+ M+  G A N   
Sbjct: 328 YAQEALAFFQEIIRKG--LRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAA 385

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + LI  +C  GNLDEA     ++   G   +   YSSL+    +   ++ A  ++++M+
Sbjct: 386 YNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMV 445

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           A GV+P+ +  + +I      G +   F L +++E+ G  S+  +   SVL+ GLCR+N 
Sbjct: 446 AKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITV--SVLVDGLCRENR 503

Query: 429 SVEAAKL 435
             +A + 
Sbjct: 504 VQDAVRF 510



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 6/291 (2%)

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           M   DE +   G +   P +    +++ G   A  L     LF  M   G   ++V Y+ 
Sbjct: 119 MALPDEALSVFGRLRELPALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYNT 178

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L++     G + +A E+  +M     D  PNVVTYT++I   C +  + +A G+   M+ 
Sbjct: 179 LINACRHQGDVAKAWEVWDQMVARRID--PNVVTYTTMICALCEEDCIGDAEGLFLEMKE 236

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  PN  T + L+       N+  A      ++  G V +   +++L+  L +  R+ E
Sbjct: 237 AGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCQANRITE 296

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A+ +F  M    V P     + +I      G   E    +++I + G     D    S++
Sbjct: 297 AKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRP--DEFTCSIV 354

Query: 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG--DEELIT 468
           + GLC       A +    M +  I L     + +++   KSG  DE L+T
Sbjct: 355 VRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVT 405



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 100/227 (44%), Gaps = 7/227 (3%)

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           A   L+  + ++   + AL + G + +      P +    +++       M+     + D
Sbjct: 108 ALGVLVIALSQMALPDEALSVFGRLRE-----LPALPACNAILDGLVKAHMLARVWELFD 162

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   G  P+ VT +TLI     +G++ +A+++ D++VA     +   Y++++  L    
Sbjct: 163 EMLGRGMVPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEED 222

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            + +AE LF +M  +G++P+    + ++        +      Y D+ K G +   +  I
Sbjct: 223 CIGDAEGLFLEMKEAGMRPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVP--NDVI 280

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            + L+ GLC+ N   EA  +   M +  +    P  + ++    +SG
Sbjct: 281 FTTLIDGLCQANRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSG 327


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 158/318 (49%), Gaps = 8/318 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D+ E  K  G          + ++  K+R   EAM VL++M     RP  + YN+++  
Sbjct: 270 LDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSA 329

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +   G +  A  L + M    + PD+ TY +++ GF NAG+ E A  +F+ M++ GC  N
Sbjct: 330 YVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPN 389

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  ++AL+      G  E  +++  E++     CSP++VT+ +++ +F   GM  E  G+
Sbjct: 390 ICTFNALIKMYGDRGKFEEMVKVFKEIKV--CKCSPDIVTWNTLLAVFGQNGMDSEVSGV 447

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
            + M+    AP R T +TLI  +   G+ D+A     +++  G       Y++++  L R
Sbjct: 448 FEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLAR 507

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
               +++EK+ ++M   G KP+ +  S ++     G +V     L E+I    +  ++ +
Sbjct: 508 GGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEI----YSGTIKT 563

Query: 414 DIHSVLLLGLCRKNHSVE 431
             H+VLL  L   N  V+
Sbjct: 564 --HAVLLKTLVLVNSKVD 579



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 138/331 (41%), Gaps = 37/331 (11%)

Query: 88  SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
           + +R  +  YN   ++    + P   ++V++  +      SV     + +   +  L  +
Sbjct: 279 AGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLED 338

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-------------GLID 194
           A+ + RKM +  ++PD   Y  ++  F   G    A E+ + M              LI 
Sbjct: 339 ALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIK 398

Query: 195 LY----------------------PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
           +Y                      PDI+T+ +++  F   G   +  G+F+ MKR   A 
Sbjct: 399 MYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAP 458

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
               ++ L+    R GS ++A+     M + G   SP++ TY +V+      G+ +++  
Sbjct: 459 ERDTFNTLISAYGRCGSFDQAMAAYKRMLEAG--VSPDLSTYNAVLATLARGGLWEQSEK 516

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L  M+  GC PN VT S+L+  +     ++    L +++ +G   +      +LV+   
Sbjct: 517 VLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNS 576

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +   L E E+ F +    G+ PD    + M+
Sbjct: 577 KVDLLVETERAFLEFRKRGISPDVTTSNAML 607



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 115/238 (48%), Gaps = 3/238 (1%)

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           ++ +  + G +  A  L+  +       D+  Y S+I  + N  +  DA  +F  MK  G
Sbjct: 150 IVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVG 209

Query: 230 CAANLVAYSALLDGICRLG-SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           C   L+ Y+A+L+   ++G    + + L+ +M+  G   +P++ TY ++I       + +
Sbjct: 210 CEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHG--LAPDLCTYNTLISCCRAGSLYE 267

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           EAL + + ++  G  P+ VT + L+  +       EA +++ ++ +     S   Y+SLV
Sbjct: 268 EALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLV 327

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
              VR   L++A  L  KM+  G+KPD    + ++      G+      ++E++ K+G
Sbjct: 328 SAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVG 385



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/366 (19%), Positives = 161/366 (43%), Gaps = 39/366 (10%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + ++V E  ++ GC  ++     +  +        E + V +++      PD + +N ++
Sbjct: 373 LAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLL 432

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
            +F + G       + + M      P+  T+ ++I  +   G  + A   +K M   G +
Sbjct: 433 AVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVS 492

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-------- 283
            +L  Y+A+L  + R G  E++ ++L EM K+GG C PN VTY+S++  +          
Sbjct: 493 PDLSTYNAVLATLARGGLWEQSEKVLAEM-KDGG-CKPNEVTYSSLLHAYANGREVERMN 550

Query: 284 -------KGMMKEALGILDRM--------------------EALGCAPNRVTISTLIKGF 316
                   G +K    +L  +                       G +P+  T + ++  +
Sbjct: 551 ALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIY 610

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
             +  + +A ++++ +   G   S   Y+SL+    RT+   ++E++F ++L  G++PD 
Sbjct: 611 GRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDV 670

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           ++ +++I   C    + E   + E+++    +  V +  ++  +      +  VEA  + 
Sbjct: 671 ISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVT--YNTFIAAYAADSMFVEAIDVI 728

Query: 437 RFMLKK 442
           R+M+K+
Sbjct: 729 RYMIKQ 734



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 2/166 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           + PD    N ++ ++  K  +  A+E++  M    L   + +Y S++  +        + 
Sbjct: 596 ISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSE 655

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +F+ +   G   ++++Y+ ++   CR   M+ A  ++ EM+       P+VVTY + I 
Sbjct: 656 QIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAP--VPDVVTYNTFIA 713

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            +    M  EA+ ++  M   GC PN  T ++++  +C     DEA
Sbjct: 714 AYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEA 759



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+ T  +M+  +     +  A  +   M   G   +L +Y++L+    R  +  ++ ++
Sbjct: 598 PDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQI 657

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             E+  +G    P+V++Y  VI  +C   MM EA  I++ M+     P+ VT +T I  +
Sbjct: 658 FREILDKG--IEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAY 715

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
             +    EA  +I  ++  G   +   Y+S+V    + K   EA
Sbjct: 716 AADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYCKLKLRDEA 759



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 68/150 (45%), Gaps = 4/150 (2%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G  +S+     +  +  +    +++  + R++ +  + PD I YN VI  +C    M 
Sbjct: 628 ESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMD 687

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  +++ M +    PD++TY + I  +       +A  + + M + GC  N   Y++++
Sbjct: 688 EAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIV 747

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNV 271
           D  C+L   + A   +  +    GD  P +
Sbjct: 748 DWYCKLKLRDEACSFVQNL----GDLDPQI 773



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 83/182 (45%), Gaps = 8/182 (4%)

Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           +++ G    V     + ++  + ++  +A  +L  M E  L      YN+++ ++    +
Sbjct: 591 FRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTEN 650

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
              ++++ + +    + PD+I+Y  +I  +C    +++A  + + MK      ++V Y+ 
Sbjct: 651 FHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNT 710

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA------LGI 293
            +           A++++  M K+G  C PN  TY S++  +C   +  EA      LG 
Sbjct: 711 FIAAYAADSMFVEAIDVIRYMIKQG--CKPNHNTYNSIVDWYCKLKLRDEACSFVQNLGD 768

Query: 294 LD 295
           LD
Sbjct: 769 LD 770



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/277 (17%), Positives = 107/277 (38%), Gaps = 37/277 (13%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++AM   ++M E  + PD   YN V+      G    +++++  M      P+ +TY S+
Sbjct: 477 DQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSL 536

Query: 206 IKGFCNAGRLEDACGL-----------------------------------FKVMKRHGC 230
           +  + N   +E    L                                   F   ++ G 
Sbjct: 537 LHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGI 596

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
           + ++   +A+L    R   + +A E+L  M + G   S  + +Y S++ ++       ++
Sbjct: 597 SPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLS--LTSYNSLMYMYSRTENFHKS 654

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             I   +   G  P+ ++ + +I  +C    +DEA ++I+++     V     Y++ +  
Sbjct: 655 EQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAA 714

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
                   EA  +   M+  G KP+    + ++   C
Sbjct: 715 YAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYC 751


>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
          Length = 630

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 157/326 (48%), Gaps = 21/326 (6%)

Query: 95  FMYNRACEMSRIKQN-----------PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR 143
           FM  + C ++ +  N               ++++   + EG V  +     + +   K  
Sbjct: 256 FMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGLVKCG 315

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
              +A  V ++M    L P   +++ VI  FC+ G++  A  + + M    + P+++ Y 
Sbjct: 316 RVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKPNVVLYS 375

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           +MI GF  +GR+ +A  LF+ M    C  N+V YS+++ G   + +  RAL    EM K 
Sbjct: 376 AMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKV 435

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G  C P  ++Y+ +I   C  G +K+A+ +   M   GCAP+ +  ++++KG C+ G +D
Sbjct: 436 G--CVPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVD 493

Query: 324 EAYQLIDKVVAGGSVSSGG-CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
              +L + ++A G        Y+ L+  L+RT  L  A  L ++ML     PD + C++ 
Sbjct: 494 GGLRLFNDMLAKGDAKPDVISYNVLLDALIRTNDLPRAMDLLNQMLDQMCDPDTITCNIF 553

Query: 383 IRELCL----GGQVLEGFCL---YED 401
           +RE  +    G + LEG  +   Y D
Sbjct: 554 LREFGVLEGKGREFLEGLVMRLCYRD 579



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 157/342 (45%), Gaps = 18/342 (5%)

Query: 116 VVEAYKEEGCV---------------VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           VV A  + GCV               VS +    +     +A   N A+ + R M     
Sbjct: 203 VVSALADAGCVEEAVALVHEMVVDGVVSAEAFNPVLKAMLRAGDVNGAVKLFRFMQLKGC 262

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
               + YN ++      G+  AA  +M+ M    + P ++TY +++ G    GR+EDA  
Sbjct: 263 TLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGLVKCGRVEDAWK 322

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + + M   G A +   +SA++ G C+ G ++RAL +   M        PNVV Y+++I  
Sbjct: 323 VAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMV--AARVKPNVVLYSAMIDG 380

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           F   G M EA  + + M    C PN VT S++++G+    N   A    ++++  G V +
Sbjct: 381 FARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVPT 440

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              YS L+  L    RLK+A  ++  M+  G  PD +A + M++ LC+ G V  G  L+ 
Sbjct: 441 AISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGGLRLFN 500

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           D+   G  +  D   ++VLL  L R N    A  L   ML +
Sbjct: 501 DMLAKGD-AKPDVISYNVLLDALIRTNDLPRAMDLLNQMLDQ 541



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 38/265 (14%)

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACG--------------------------------- 220
           +L PD  TY +++    +AG +E+A                                   
Sbjct: 192 NLVPDKFTYSTVVSALADAGCVEEAVALVHEMVVDGVVSAEAFNPVLKAMLRAGDVNGAV 251

Query: 221 -LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF+ M+  GC    V Y+ LL G+   G    A+ ++  ME EG    P ++TY +V+ 
Sbjct: 252 KLFRFMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEG--IVPGLMTYGAVVD 309

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                G +++A  +   M   G AP+    S +I GFC  G +D A  + + +VA     
Sbjct: 310 GLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKP 369

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   YS+++    R+ R+ EAEKLF +M+ +   P+ +  S M+R              +
Sbjct: 370 NVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTW 429

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLC 424
           E++ K+G + +  S  +S+L+ GLC
Sbjct: 430 EEMIKVGCVPTAIS--YSILISGLC 452


>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 156/356 (43%), Gaps = 40/356 (11%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V ++ +  V+ + C K+  + +A  +L +M E  + PD   YN +I ++C+K     A
Sbjct: 198 GVVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEA 257

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             +   M    + PDI+TY S+I GF   GR+ +A  LF+ +K     AN V Y+ L+DG
Sbjct: 258 LSVQDRMERSGVAPDIVTYNSLIHGFSREGRMREATRLFRKIK-GVVMANHVTYTTLIDG 316

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            CR+  ++ AL L   ME  G    P VVTY S+++  C  G ++EA  +L  M      
Sbjct: 317 YCRMNDIDEALRLREVMESRG--FCPGVVTYNSILRKLCEDGRIREANRLLTEMSVKKIE 374

Query: 304 PNRVTISTLIK-----------------------------------GFCVEGNLDEAYQL 328
           P+ +T +TLI                                    GFC    LD A + 
Sbjct: 375 PDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELDNAKEE 434

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
           +  ++  G       YS LV       +  E  KL  +    G+ PD      +IR +C 
Sbjct: 435 LFSMIEKGLSPGYSAYSWLVDGFYNQNKQDEITKLPEEFEKRGLCPDVALYRGLIRRICK 494

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             QV     L+E +EK G +   DS I++ +     R     +A+ L   M  +R+
Sbjct: 495 LEQVDYAKVLFESMEKKGLMG--DSVIYTTMAYAYWRTGKVTDASALFDVMYNRRL 548



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 42/245 (17%)

Query: 197 PDIITYV--SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           P+++++V   ++  +  +G + D+  +F+ +   G   +L A + LL+ + +    +   
Sbjct: 129 PEVLSHVFSWLMIFYAKSGMINDSIAVFEQIMSCGLKPHLQACTVLLNSLVKERLTDTVW 188

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           ++  +M K G     N+  Y  ++      G  ++A  +L  ME  G  P+  T +TLI 
Sbjct: 189 KIFKKMVKLG--VVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIFTYNTLIS 246

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
            +C +    EA  + D+                                   M  SGV P
Sbjct: 247 VYCKKSMHFEALSVQDR-----------------------------------MERSGVAP 271

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           D +  + +I      G++ E   L+  I+ +   + V    ++ L+ G CR N   EA +
Sbjct: 272 DIVTYNSLIHGFSREGRMREATRLFRKIKGVVMANHV---TYTTLIDGYCRMNDIDEALR 328

Query: 435 LARFM 439
           L   M
Sbjct: 329 LREVM 333


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 173/364 (47%), Gaps = 22/364 (6%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V ++    ++  LC   R ++    VLR+M E    PD      +++  C++     A E
Sbjct: 120 VEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALE 179

Query: 186 LM------KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           L       +G G     PD+++Y ++I GF   G    A   +  M     + ++V YS+
Sbjct: 180 LPHMMADGRGGGSA---PDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSS 236

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL----- 294
           ++  +C+  +M++A+E+L  M K G    PN  TYTS++  +C  G  KEA+G L     
Sbjct: 237 IIAALCKGQAMDKAMEVLTSMVKNG--VMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRS 294

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           D +E  G  P+  T  TL++G+  +G L   + L+D +V  G       Y+ L+    + 
Sbjct: 295 DGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQ 354

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
            ++ EA  +FSKM   G+ PD +    +I  LC  G+V +    +E +   G   S  + 
Sbjct: 355 GKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL--SPGNI 412

Query: 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG----DEELITNL 470
           +++ L+ GLC  N    A +L   ML + I L   + + I++   K G     E+L   +
Sbjct: 413 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLM 472

Query: 471 PKIG 474
            +IG
Sbjct: 473 VRIG 476



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 156/316 (49%), Gaps = 10/316 (3%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC K +  ++AM VL  M +  + P+   Y +++  +C  G    A   +K
Sbjct: 232 VTYSSIIAALC-KGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLK 290

Query: 189 -----GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
                G+    L PDI TY ++++G+   G L     L  +M R+G   +   Y+ L+  
Sbjct: 291 KVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICA 350

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
             + G ++ A+ +  +M ++G   +P+ VTY +VI I C  G +++A+   ++M   G +
Sbjct: 351 YAKQGKVDEAMLVFSKMRQQG--LNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLS 408

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P  +  ++LI G C     + A +LI +++  G   +   ++S++    +  R+ E+EKL
Sbjct: 409 PGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL 468

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F  M+  GVKPD +  S +I   CL G++ E   L   +  +G     ++  +  L+ G 
Sbjct: 469 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGL--KPNTVTYRTLINGY 526

Query: 424 CRKNHSVEAAKLARFM 439
           C+ +   +A  L + M
Sbjct: 527 CKISRMGDALVLFKEM 542



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 159/338 (47%), Gaps = 39/338 (11%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L PD   Y  +++ +  KG ++    L+  M    ++PD   Y  +I  +   G++++A 
Sbjct: 302 LEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAM 361

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +F  M++ G   + V Y A++  +C+ G +E A+    +M  EG   SP  + Y S+I 
Sbjct: 362 LVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG--LSPGNIVYNSLIH 419

Query: 280 ---------------------------IF--------CGKGMMKEALGILDRMEALGCAP 304
                                      IF        C +G + E+  + D M  +G  P
Sbjct: 420 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 479

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           + +T STLI G+C+ G +DEA +L+  +V+ G   +   Y +L+    +  R+ +A  LF
Sbjct: 480 DIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLF 539

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            +M +SGV PD +  +++++ L    +      LY  I + G  + ++   ++++L GLC
Sbjct: 540 KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG--TQIELSTYNIILHGLC 597

Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +   + +A ++ + +    + L+    + +++ L K G
Sbjct: 598 KNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVG 635



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 3/259 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    VI  LC+  R+  +AM    +M +  L P  I+YN++I   C       A+EL+
Sbjct: 376 AVTYGAVIGILCKSGRV-EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 434

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M    +  + I + S+I   C  GR+ ++  LF +M R G   +++ YS L+DG C  
Sbjct: 435 LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLA 494

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G M+ A++LL  M   G    PN VTY ++I  +C    M +AL +   ME+ G +P+ +
Sbjct: 495 GKMDEAMKLLSGMVSVG--LKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDII 552

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + +++G         A +L  ++   G+      Y+ ++  L + K   +A ++F  +
Sbjct: 553 TYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNL 612

Query: 368 LASGVKPDGLACSVMIREL 386
               +K +    ++MI  L
Sbjct: 613 CLMDLKLEARTFNIMIDAL 631



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 143/310 (46%), Gaps = 4/310 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           +TI +N++I   C++G +I +++L   M  I + PDIITY ++I G+C AG++++A  L 
Sbjct: 445 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLL 504

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   N V Y  L++G C++  M  AL L  EME  G   SP+++TY  ++Q   
Sbjct: 505 SGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSG--VSPDIITYNIILQGLF 562

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
                  A  +  R+   G      T + ++ G C     D+A ++   +          
Sbjct: 563 QTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEAR 622

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            ++ ++  L++  R  EA+ LF    ++G+ P+     +M   +   G + E   L+  +
Sbjct: 623 TFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSM 682

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           E  G   +VDS + + ++  L ++     A      + +K   L+       ++ L    
Sbjct: 683 EDNG--CTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGK 740

Query: 463 DEELITNLPK 472
            +E    LP+
Sbjct: 741 YQEYHRFLPE 750



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 21/225 (9%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P + TY  +I   C A RL+        + + G     + ++ LL G+C       A+++
Sbjct: 85  PTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCAPNRVTISTLI 313
           +     E   C P+V + T +++  C +   +EAL +   M      G AP+ V+ +T+I
Sbjct: 145 VLRRMTE-LSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVI 203

Query: 314 KGFCVEGNLDEAY----QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
            GF  EG+  +AY    +++D+ ++   V+    YSS++  L + + + +A ++ + M+ 
Sbjct: 204 NGFFKEGDSGKAYSTYHEMLDRRISPDVVT----YSSIIAALCKGQAMDKAMEVLTSMVK 259

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD 414
           +GV P+    + ++   C  GQ  E          IGFL  V SD
Sbjct: 260 NGVMPNCRTYTSIMHGYCSSGQPKEA---------IGFLKKVRSD 295


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 181/422 (42%), Gaps = 74/422 (17%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D V    E GCV        I +   K RL  EA  +L  M    L P+   YN ++  
Sbjct: 233 LDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCG 292

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C  G +  A ++++ M   +L P + TY  ++ GFCN G++++A  +   M++     +
Sbjct: 293 YCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPD 352

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V Y+ L+DG  +         L+ EM+K+G  C  N VTY  +++  C KG M EA   
Sbjct: 353 VVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKC--NAVTYNIILKWMCKKGNMTEATTT 410

Query: 294 LDRMEALGCAPNRVTISTLIKGFC-----------------------------------V 318
           LD+ME  G +P+ VT +TLI  +C                                   V
Sbjct: 411 LDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCV 470

Query: 319 EGNLDEAYQL----------IDKVVAG-------------------------GSVSSGGC 343
           E  LDEAY L          +D+V  G                           + S   
Sbjct: 471 EKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTIT 530

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+S++  L +++++ +A    ++ML +G+ PD    +++I   CL G V + F  +   E
Sbjct: 531 YNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHN--E 588

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
            I  L   D    ++LL GLCR+    +A KL   ++ K   +     + I+  L K G 
Sbjct: 589 MIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGK 648

Query: 464 EE 465
            E
Sbjct: 649 FE 650



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 147/308 (47%), Gaps = 4/308 (1%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKM 155
           YN   +     ++ S +  ++E   ++G   +     +I   +C+K  +  EA   L KM
Sbjct: 356 YNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMT-EATTTLDKM 414

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            E  L PD + YN +I  +C+ G M  A  +M  M    L  D  T  +++   C   +L
Sbjct: 415 EENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKL 474

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           ++A  L     + G   + V+Y  L+ G  +    +RAL L  EM++      P+ +TY 
Sbjct: 475 DEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKER--QIMPSTITYN 532

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
           SVI   C    + +A+  L+ M   G  P+  T + +I GFC+EGN+++A+Q  ++++  
Sbjct: 533 SVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIEN 592

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
                    + L+  L R   L++A KLF+ +++ G   D +  + +I  LC  G+    
Sbjct: 593 LFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENA 652

Query: 396 FCLYEDIE 403
           + L  ++E
Sbjct: 653 YDLLTEME 660



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 148/299 (49%), Gaps = 9/299 (3%)

Query: 148 AMWVLRKMPEFDLRPDTI----IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           A  +  KM   + RP+ +    + N+++R +     ++ A +++K    + + P+  ++ 
Sbjct: 159 ATQIFNKMKRLNYRPNLLTCNTLMNSLVR-YPSSSSILLARQVLKDSIKLGVVPNTNSFN 217

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            +I G+C   +++DA      M   GC  + V+Y+ +LD + +   ++ A +LL +M+ +
Sbjct: 218 ILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSK 277

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G   SPN  TY  ++  +C  G++KEA  +++ M      P   T + L+ GFC +G +D
Sbjct: 278 G--LSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKID 335

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           EA+++ D++     +     Y++L+    + +   E   L  +M   GVK + +  ++++
Sbjct: 336 EAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIIL 395

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           + +C  G + E     + +E+ G   S D   ++ L+   C+     +A ++   M  K
Sbjct: 396 KWMCKKGNMTEATTTLDKMEENGL--SPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSK 452



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 136/288 (47%), Gaps = 4/288 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  VL+   +  + P+T  +N +I  +C +  +  A + +  M      PD ++Y +++ 
Sbjct: 197 ARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILD 256

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
                  L++A  L   MK  G + N   Y+ L+ G CRLG ++ A +++  M +   + 
Sbjct: 257 ALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTR--NNL 314

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P V TY  ++  FC  G + EA  I D ME +   P+ VT +TLI G     +  E Y 
Sbjct: 315 LPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYS 374

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           LI+++   G   +   Y+ ++  + +   + EA     KM  +G+ PD +  + +I   C
Sbjct: 375 LIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYC 434

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             G++ + F + +++   G    +D+   + +L  LC +    EA  L
Sbjct: 435 KAGKMGKAFRMMDEMTSKGL--KIDTWTLNTILHCLCVEKKLDEAYNL 480



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 16/293 (5%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K    + A+ +  +M E  + P TI YN+VI   C+   +  A + +  M    L PD  
Sbjct: 505 KDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDET 564

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  +I GFC  G +E A      M  +    ++   + LL G+CR G +E+AL+L   +
Sbjct: 565 TYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTL 624

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
             +G D   +VVTY ++I   C +G  + A  +L  MEA    P++ T   +I      G
Sbjct: 625 VSKGKDI--DVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAG 682

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            + EA +   K+V  G V              +  +L + + + +  ++       +A S
Sbjct: 683 RIKEAEEFTLKMVESGIVHD------------QNLKLGKGQNVLTSEVSEHFDFKSIAYS 730

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
             I ELC   +  +   L+ ++ K G   +++   +  L+ GL ++  S   A
Sbjct: 731 DQINELCNQHKYKDAMHLFVEVTKEGV--ALNKYTYLNLMEGLIKRRKSTSKA 781


>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Glycine max]
          Length = 648

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/437 (23%), Positives = 208/437 (47%), Gaps = 25/437 (5%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN-RACEM 103
           N+E  L     +L    V++VL R F    +   RFF WA  +  + H S  YN   C +
Sbjct: 190 NMEVVLDECGVRLSHDLVVDVLQR-FKHARKPAFRFFCWAGKRPGFAHDSRTYNFMMCVL 248

Query: 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
            R +Q  +++  ++E   E+G +++++   +      +A+   +A+ +   M ++  +  
Sbjct: 249 GRTRQFETMVA-MLEEMGEKG-LLTMETFSIAIKAFAEAKQRKKAVGIFDLMKKYGFKVG 306

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLI------DLYPDIITYVSMIKGFCNAGRLED 217
             + N ++       D ++  +L K    +         P + TY  ++ G+C    L +
Sbjct: 307 VDVINFLL-------DSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLKNLLE 359

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  ++  M   G   ++VA++ +L+G+ +      A++L   M+ +G   SPNV +YT +
Sbjct: 360 AGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGP--SPNVRSYTIM 417

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           IQ FC + +M EA+   D M   GC P+    + LI GF  +  +D  Y L+ ++   G 
Sbjct: 418 IQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGC 477

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
              G  Y++L+  +       +A +++ KM+ SG+KP     +++++   +      G  
Sbjct: 478 PPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHE 537

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD--KIV 455
           +++++ + G     D + + V + GL R++ S EA K    ML+K   ++ P +D  K  
Sbjct: 538 IWDEMHQKG--CCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEK--GMKAPKLDYNKFA 593

Query: 456 EHLKKSGDEELITNLPK 472
             + K+G+  ++  L +
Sbjct: 594 SDISKTGNAVILEELAR 610



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/156 (18%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           ++  +++  +E GC    +    +  L     + ++A+ + +KM +  ++P    YN ++
Sbjct: 464 MVYSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIM 523

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           + +    +     E+   M      PD  +Y+  I G     R  +AC   + M   G  
Sbjct: 524 KSYFVTKNYEMGHEIWDEMHQKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKGMK 583

Query: 232 ANLVAYSALLDGICRLGS------MERALELLGEME 261
           A  + Y+     I + G+      + R +  +G+ E
Sbjct: 584 APKLDYNKFASDISKTGNAVILEELARKMNFVGKFE 619


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 149/286 (52%), Gaps = 10/286 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + YN +I    + G + AA      M  + L PD+ITY S++ G+C AG  ++A  L
Sbjct: 335 PTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLL 394

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ-- 279
           F  ++R G A  ++ Y+ L+DG CRLG +E A  L  EM ++G  C P+V TYT +++  
Sbjct: 395 FGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQG--CLPDVYTYTILMKGS 452

Query: 280 -IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C   M +E     D M + G  P+    +T I      G++ +++QL + ++  G  
Sbjct: 453 HNVCSLAMTRE---FFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGIS 509

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
           S    Y+ L+  L +T  LK+AE+L  +M+++G++PD +  + +I   C  G + E    
Sbjct: 510 SDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKF 569

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + D+   G   S  +  ++V++   CR+ +   A    R ML++ +
Sbjct: 570 FNDMISDGLPPSAVT--YTVIIHAYCRRGNLYSAYGWFRKMLEEGV 613



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 156/355 (43%), Gaps = 38/355 (10%)

Query: 86  LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEKARL 144
           ++ S + SSF YN        +     + D+    + EG + +V     +I  L +  ++
Sbjct: 294 MRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQI 353

Query: 145 -ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
            A +A +V  +M    L PD I YN+++  +C+ G+   A  L   +    L P ++TY 
Sbjct: 354 EAAQAKFV--EMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYN 411

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            +I G+C  G LE+A  L + M   GC  ++  Y+ L+ G   + S+    E   EM  +
Sbjct: 412 ILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSK 471

Query: 264 G--GDC-------------------------------SPNVVTYTSVIQIFCGKGMMKEA 290
           G   DC                               S + VTY  +I   C  G +K+A
Sbjct: 472 GLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDA 531

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
             ++ +M + G  P+ +T + LI   C  G L EA +  + +++ G   S   Y+ ++  
Sbjct: 532 EELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHA 591

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF-CLYEDIEK 404
             R   L  A   F KML  GV+P+ +  +V+I  LC  G+    +   YE +E+
Sbjct: 592 YCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLER 646



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 125/278 (44%), Gaps = 37/278 (13%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA    EA+ +   +    L P  + YN +I  +C  GD+  A  L + M      PD+ 
Sbjct: 384 KAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVY 443

Query: 201 TYVSMIKGFCNA-----------------------------------GRLEDACGLFKVM 225
           TY  ++KG  N                                    G +  +  L +V+
Sbjct: 444 TYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVI 503

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
              G +++ V Y+ L+DG+C+ G+++ A EL+ +M   G    P+ +TYT +I   C +G
Sbjct: 504 MLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNG--LQPDCITYTCLIHAHCERG 561

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            ++EA    + M + G  P+ VT + +I  +C  GNL  AY    K++  G   +   Y+
Sbjct: 562 FLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYN 621

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            L+  L R  R + A + F +ML  G+ P+    +++I
Sbjct: 622 VLIHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLI 659



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 154/363 (42%), Gaps = 43/363 (11%)

Query: 117 VEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + A++E    G    VK    +  +   A   ++   V  +M +  + P  + YN ++  
Sbjct: 181 LSAFREMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDS 240

Query: 174 FCEKGDMIAADELMKGMGL--IDLYPDIITYVSMIKGFCNAG------------RLEDAC 219
           F ++G     D L+K M        P+ +TY  +I G    G            RL    
Sbjct: 241 FSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSKKA 300

Query: 220 GLFKV----------------------MKRHGCAANLVAYSALLDGICRLGSMERALELL 257
             F                        M+  G    +V Y+A++ G+ + G +E A    
Sbjct: 301 SSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKF 360

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM   G    P+V+TY S++  +C  G  KEAL +   +   G AP  +T + LI G+C
Sbjct: 361 VEMRAMG--LLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYC 418

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G+L+EA +L +++V  G +     Y+ L+        L    + F +ML+ G++PD  
Sbjct: 419 RLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCF 478

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           A +  I      G + + F L E I   G   S D+  +++L+ GLC+  +  +A +L  
Sbjct: 479 AYNTRICAEITLGDISKSFQLREVIMLEGI--SSDTVTYNILIDGLCKTGNLKDAEELMM 536

Query: 438 FML 440
            M+
Sbjct: 537 QMI 539



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
           DT+ YN +I   C+ G++  A+ELM  M    L PD ITY  +I   C  G L +A   F
Sbjct: 511 DTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFF 570

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
             M   G   + V Y+ ++   CR G++  A     +M +EG    PN +TY  +I   C
Sbjct: 571 NDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEG--VEPNEITYNVLIHALC 628

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
             G  + A      M   G  PN+ T + LI G
Sbjct: 629 RMGRTQLAYRHFYEMLERGLVPNKYTYTLLIDG 661



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 121/246 (49%), Gaps = 3/246 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD+     +++   +A R +D   +   M + G   ++V Y+ LLD   + G  ++   L
Sbjct: 194 PDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKIDML 253

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EME  G  C PN VTY  VI     KG ++EA  +++ M  L    +  T + LI G 
Sbjct: 254 LKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMR-LSKKASSFTYNPLITGL 312

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
              G + +   L  ++   G + +   Y++++  L+++ +++ A+  F +M A G+ PD 
Sbjct: 313 LARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDV 372

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + ++   C  G   E   L+ D+ + G   +V +  +++L+ G CR     EA +L 
Sbjct: 373 ITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLT--YNILIDGYCRLGDLEEARRLK 430

Query: 437 RFMLKK 442
             M+++
Sbjct: 431 EEMVEQ 436



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 3/146 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+   L  +A  ++ +M    L+PD I Y  +I   CE+G +  A +    M   
Sbjct: 518 LIDGLCKTGNL-KDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISD 576

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P  +TY  +I  +C  G L  A G F+ M   G   N + Y+ L+  +CR+G  + A
Sbjct: 577 GLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLA 636

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQ 279
                EM + G    PN  TYT +I 
Sbjct: 637 YRHFYEMLERG--LVPNKYTYTLLID 660



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 4/143 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+   +K    +++ ++    +  C+    +   I   CE+  L  EA      M    L
Sbjct: 523 CKTGNLKDAEELMMQMISNGLQPDCITYTCL---IHAHCERGFL-REARKFFNDMISDGL 578

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P  + Y  +I  +C +G++ +A    + M    + P+ ITY  +I   C  GR + A  
Sbjct: 579 PPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYR 638

Query: 221 LFKVMKRHGCAANLVAYSALLDG 243
            F  M   G   N   Y+ L+DG
Sbjct: 639 HFYEMLERGLVPNKYTYTLLIDG 661


>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
          Length = 346

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 114/193 (59%), Gaps = 2/193 (1%)

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R A++A+ +LR M    +R D + Y  +IR  C+  ++  A ELM  M    + P+++ Y
Sbjct: 129 RRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVY 188

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            S+++G+C +GR ED   +F  M   G   ++V Y+ L+D +C++G  ++A  ++  M +
Sbjct: 189 SSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVR 248

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    PNVVTY  +I   C +G +KEA+G+L +M   G AP+ VT +TLIKG      +
Sbjct: 249 RG--LEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEM 306

Query: 323 DEAYQLIDKVVAG 335
           DEA  L++++V G
Sbjct: 307 DEAMWLLEEMVRG 319



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 128/260 (49%), Gaps = 8/260 (3%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL---IDLYPDIITY 202
            EA  +L  +P      D + YN V+   C +G    A  L++ M L       P+ ++Y
Sbjct: 62  GEATSLLDALPSVR---DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSY 118

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
             +++  C   R + A GL + M+  G  A++V Y  L+ G+C    +++A+EL+GEM +
Sbjct: 119 TVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCE 178

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    PNVV Y+S++Q +C  G  ++   +   M   G  P+ V  + LI   C  G  
Sbjct: 179 SG--IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKA 236

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            +A+ ++D +V  G   +   Y+ L+  + +   +KEA  +  KM   GV PD +  + +
Sbjct: 237 KKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTL 296

Query: 383 IRELCLGGQVLEGFCLYEDI 402
           I+ L    ++ E   L E++
Sbjct: 297 IKGLSDVLEMDEAMWLLEEM 316



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 6/244 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKM---PEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           +V    V+  LC +    + A  +LR M   P    RP+ + Y  ++R  C       A 
Sbjct: 77  AVSYNTVLTALCRRGH-HDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAV 135

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            L++ M    +  D++TY ++I+G C+A  ++ A  L   M   G   N+V YS+LL G 
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C+ G  E   ++  EM ++G    P+VV YT +I   C  G  K+A G++D M   G  P
Sbjct: 196 CKSGRWEDVGKVFVEMSEKG--IEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP 253

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N VT + LI   C EG++ EA  ++ K+   G       Y++L+  L     + EA  L 
Sbjct: 254 NVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLL 313

Query: 365 SKML 368
            +M+
Sbjct: 314 EEMV 317



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 112/213 (52%), Gaps = 3/213 (1%)

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGD-CSPNVVTYTSVIQIFCGKGMMKEAL 291
           + V+Y+ +L  +CR G  +RA  LL  M  E    C PN V+YT +++  C      +A+
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRRADQAV 135

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
           G+L  M + G   + VT  TLI+G C    +D+A +L+ ++   G   +   YSSL+   
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            ++ R ++  K+F +M   G++PD +  + +I  LC  G+  +   + + + + G   +V
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNV 255

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            +  ++VL+  +C++    EA  + + M +K +
Sbjct: 256 VT--YNVLINCMCKEGSVKEAIGVLKKMSEKGV 286



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 116/244 (47%), Gaps = 10/244 (4%)

Query: 186 LMKGMGLIDLYP---DIITYVSMIKGFCNAGRLEDACGLFKVMK---RHGCAANLVAYSA 239
           L +   L+D  P   D ++Y +++   C  G  + A  L + M       C  N V+Y+ 
Sbjct: 61  LGEATSLLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTV 120

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+  +C     ++A+ LL  M   G     +VVTY ++I+  C    + +A+ ++  M  
Sbjct: 121 LMRALCADRRADQAVGLLRSMRSAG--VRADVVTYGTLIRGLCDAAEVDKAVELMGEMCE 178

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  PN V  S+L++G+C  G  ++  ++  ++   G       Y+ L+  L +  + K+
Sbjct: 179 SGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKK 238

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A  +   M+  G++P+ +  +V+I  +C  G V E   + + + + G    V +  ++ L
Sbjct: 239 AHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVT--YNTL 296

Query: 420 LLGL 423
           + GL
Sbjct: 297 IKGL 300



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LC+  + A +A  V+  M    L P+ + YN +I   C++G +  A  ++K M   
Sbjct: 226 LIDSLCKVGK-AKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEK 284

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
            + PD++TY ++IKG  +   +++A  L + M R
Sbjct: 285 GVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVR 318


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 168/364 (46%), Gaps = 36/364 (9%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++++  + EGC  +V    VI +   +    ++A  +L  +P    +P+T+ YN V++ 
Sbjct: 1   MELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKG 60

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C     + A+EL+  M   +  P+  T   ++      G L+      + M +HGC AN
Sbjct: 61  LCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTAN 120

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEG----------------------------- 264
           +V Y+A++ G+C  G ++ ALELL  M+  G                             
Sbjct: 121 VVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMI 180

Query: 265 ----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
                DC P+ VT+ ++I   C KG++ +A  +  +M   GC PN  T ST+I G    G
Sbjct: 181 KMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAG 240

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            +++A +L++++ + G  ++   Y  L   L +  +++E  ++  K+  SG+ P  +  +
Sbjct: 241 KMEQALELLNEMASKG-YNTDKMYQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLFN 299

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            ++  LC  G+      +  D+   G +   D   + +L+ GL  + +  EA +L   + 
Sbjct: 300 TVLLVLCRNGKTDYAIDVLADMVSYGCMP--DELTYIILIEGLSYEGYLQEARELVSRLC 357

Query: 441 KKRI 444
            + +
Sbjct: 358 SRDV 361



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 118/258 (45%), Gaps = 34/258 (13%)

Query: 117 VEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +E   + GC  +V     VI  +CE+  + + A+ +L  M  F  +PD + YN +++  C
Sbjct: 109 LEKMSKHGCTANVVTYNAVISGMCEQGHV-DSALELLSNMQSFGCKPDIVTYNTLLKGLC 167

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
                  A+ELM  M   D  PD +T+ ++I   C  G +  A  +FK M   GC  N  
Sbjct: 168 SADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNST 227

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDC---------------------------- 267
            YS ++ G+ + G ME+ALELL EM  +G +                             
Sbjct: 228 TYSTIIGGLAKAGKMEQALELLNEMASKGYNTDKMYQLLTESLNKEDKIEEVVQVVHKLQ 287

Query: 268 ----SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
               SP  V + +V+ + C  G    A+ +L  M + GC P+ +T   LI+G   EG L 
Sbjct: 288 DSGISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQ 347

Query: 324 EAYQLIDKVVAGGSVSSG 341
           EA +L+ ++ +   +S+ 
Sbjct: 348 EARELVSRLCSRDVLSNS 365


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 222/500 (44%), Gaps = 68/500 (13%)

Query: 6   LSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEV 65
            ++IL S V   N+     H+TTA          Q     I  T+ T            +
Sbjct: 60  FNKILGSIVKANNN-----HYTTAISLSH-----QLELKGITPTIVT----------FNI 99

Query: 66  LHRCFPSQSQMGIRFFIWAA-LQSSYRHSSFMYNR----ACEMSRIKQNPSIIIDVVEAY 120
           L  C+    +M   F I+A  L+  Y  ++  +N      C   ++K+      D V A 
Sbjct: 100 LVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFH-DHVIAL 158

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
                 VS + +  I  LC+       A+ +L+K+    +  D ++YN +I   C+   +
Sbjct: 159 GFHLDQVSYRTL--INGLCKIGE-TRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAV 215

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A +L   M    + PD++T+ S+I GFC  G+L++A GLF  M       ++  +S L
Sbjct: 216 SDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSIL 275

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC------------------ 282
           +D +C+ G++ RA  +L  M K+G    P+VVTY+S++  +C                  
Sbjct: 276 VDALCKDGNITRAKNMLAVMMKQG--VIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRL 333

Query: 283 --------------GKG---MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
                         G G   M+ EAL +   M   G AP+ VT ++LI G C  G +  A
Sbjct: 334 GVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYA 393

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           +QL+D++   G  +    Y+SL+  L +   + +A  L  K+   G++P     +++I  
Sbjct: 394 WQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDG 453

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           LC GG++     +++D+   G+  SV++  +++++ GLC++    EA  L   M    I 
Sbjct: 454 LCKGGRLKNAQDVFQDLLIKGY--SVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGII 511

Query: 446 LQGPYVDKIVEHLKKSGDEE 465
                 + I+  L +  + E
Sbjct: 512 PDAVTYETIIRALFRKDENE 531



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 156/318 (49%), Gaps = 5/318 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C   +L  EA  +  +M   ++ PD   ++ ++   C+ G++  A  ++ 
Sbjct: 235 VTFNSLILGFCVVGQLK-EAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLA 293

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD++TY S++ G+C    +  A  +F  M R G A +  +Y+ +++G+ ++ 
Sbjct: 294 VMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIK 353

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ AL L  EM  +G   +P+ VTY S+I   C  G +  A  ++D M   G   + +T
Sbjct: 354 MVDEALSLFKEMCCKG--IAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILT 411

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            ++LI   C   ++D+A  L+ K+   G   S   Y+ L+  L +  RLK A+ +F  +L
Sbjct: 412 YNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLL 471

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             G   +    ++MI  LC  G   E   L   +E  G +   D+  +  ++  L RK+ 
Sbjct: 472 IKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIP--DAVTYETIIRALFRKDE 529

Query: 429 SVEAAKLARFMLKKRIWL 446
           + +A KL R M+ + + L
Sbjct: 530 NEKAEKLLREMIIRGLLL 547



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 120/262 (45%), Gaps = 45/262 (17%)

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGS--MERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
           F  M R     ++V ++ +L  I +  +     A+ L  ++E +G   +P +VT+  ++ 
Sbjct: 45  FHRMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKG--ITPTIVTFNILVN 102

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--- 336
            +C  G M  A  I  ++  LG  P  +T +TLI G C+ G L EA    D V+A G   
Sbjct: 103 CYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHL 162

Query: 337 ------SVSSGGC--------------------------YSSLVVELVRTKRLKEAEKLF 364
                 ++ +G C                          Y+ ++  L + K + +A +L+
Sbjct: 163 DQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLY 222

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH--SVLLLG 422
           S+M+   + PD +  + +I   C+ GQ+ E F L+ ++     L +++ D++  S+L+  
Sbjct: 223 SEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEM----VLKNINPDVYTFSILVDA 278

Query: 423 LCRKNHSVEAAKLARFMLKKRI 444
           LC+  +   A  +   M+K+ +
Sbjct: 279 LCKDGNITRAKNMLAVMMKQGV 300



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 4/164 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++ RI    S    +V+     G    +     + ++  K    ++A+ +++K+ +  +
Sbjct: 385 CKLGRI----SYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGI 440

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P    YN +I   C+ G +  A ++ + + +     +  TY  MI G C  G   +A  
Sbjct: 441 QPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEV 500

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           L   M+ +G   + V Y  ++  + R    E+A +LL EM   G
Sbjct: 501 LLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRG 544


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 153/313 (48%), Gaps = 8/313 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++  L  +A+ ++ +M E     D   YN VI   C+ G +  A+ LM      
Sbjct: 397 LIKGLCQEG-LILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAK 455

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ T+ ++I G+C   ++E    +   M  HG   +++ Y+++L+G+ +    E  
Sbjct: 456 GYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDL 515

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +E    M ++G  C PN +TY  + +  C  G + EAL ++D +   G  P+ V+ +T+I
Sbjct: 516 METFETMVEKG--CVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATII 573

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
            GF   G+L  AYQL  ++     VS +   Y+ ++        L   EKLF +M A G 
Sbjct: 574 SGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGC 633

Query: 373 KPDGLACSVMIRELCLGGQVLEGF-CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
            PD     VMI   C+ G    G+  L E IEK GF+ S+ +     ++  LC ++   E
Sbjct: 634 APDTYTYRVMIDGFCITGNTDSGYKFLLEMIEK-GFIPSLTT--FGRVINCLCVQHRVHE 690

Query: 432 AAKLARFMLKKRI 444
           A  +  FM+   I
Sbjct: 691 AVDIIHFMVHNGI 703



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 151/306 (49%), Gaps = 5/306 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+ + +  EA   L K+    L PD   YN +I  +C+ G +  A+++++G    
Sbjct: 292 LICGLCKNSNVV-EAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICK 350

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  TY S+I G C    ++ A  LF      G    ++ Y+ L+ G+C+ G + +A
Sbjct: 351 GFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQA 410

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L+++ EM + G  CS ++ TY  VI   C  G + +A  +++   A G  P+  T +TLI
Sbjct: 411 LQMMNEMSENG--CSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLI 468

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C +  ++   Q+++K+ + G       Y+S++  L +  + ++  + F  M+  G  
Sbjct: 469 DGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCV 528

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  +++   LC  G+V E   L ++I   G   + D+   + ++ G         A 
Sbjct: 529 PNKITYNILTESLCKAGKVNEALDLVDEILNKGI--TPDTVSFATIISGFANNGDLKGAY 586

Query: 434 KLARFM 439
           +L R M
Sbjct: 587 QLFRRM 592



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 161/337 (47%), Gaps = 17/337 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV------------IFNLCEKARLANEA 148
           CE S +  N  + I V   Y ++   V ++M  V            I + C   R  + A
Sbjct: 107 CEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKR-PHSA 165

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
           + +L  M     + + + Y  V+  F E+   + A EL   M  I ++PD+ T+  ++  
Sbjct: 166 LRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHT 225

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C  G ++++  L   + + G  +NL  ++  + G+CR G +  A+ +L  + +EG   +
Sbjct: 226 LCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREG--LT 283

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P+VVTY ++I   C    + EA   L ++   G  P+  T +TLI G+C  G L  A ++
Sbjct: 284 PDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKI 343

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
           +   +  G V     Y SL+  L +   +  A  LF+  L  G+KP  +  +++I+ LC 
Sbjct: 344 LQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQ 403

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            G +L+   +  ++ + G   S D   +++++ GLC+
Sbjct: 404 EGLILQALQMMNEMSENG--CSSDIWTYNLVINGLCK 438



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 137/303 (45%), Gaps = 18/303 (5%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ V  +M  ++  P  + YN ++ +  E G    A ++   M  + + PD+ T+   I
Sbjct: 94  EAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRI 153

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
           K FC   R   A  L   M   GC  N VAY  ++ G         A EL  +M + G  
Sbjct: 154 KSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIG-- 211

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+V T+  ++   C KG ++E+  +L+++   G   N  T +  I+G C +G L  A 
Sbjct: 212 IFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAM 271

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            ++D V+  G       Y++L+  L +   + EAEK   K++  G++PDG   + +I   
Sbjct: 272 SMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGY 331

Query: 387 CLGGQVLEGFCLYEDIEKI-------GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           C  G       + ++ EKI       GF+   D   +  L+ GLC+ +    A  L    
Sbjct: 332 CKMG-------MLQNAEKILQGAICKGFVP--DEFTYCSLINGLCQNDEIDRALALFNAA 382

Query: 440 LKK 442
           L K
Sbjct: 383 LGK 385



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 141/332 (42%), Gaps = 46/332 (13%)

Query: 84  AALQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139
           AAL    + +  +YN      C+   I Q     + ++    E GC   +    ++ N  
Sbjct: 381 AALGKGLKPTVILYNMLIKGLCQEGLILQ----ALQMMNEMSENGCSSDIWTYNLVINGL 436

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
            K    ++A  ++         PD   +N +I  +C++  M    +++  M    + PD+
Sbjct: 437 CKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDV 496

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           ITY S++ G   A + ED    F+ M   GC  N + Y+ L + +C+ G +  AL+L+ E
Sbjct: 497 ITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDE 556

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME--------------------- 298
           +  +G   +P+ V++ ++I  F   G +K A  +  RM                      
Sbjct: 557 ILNKG--ITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAE 614

Query: 299 ---------------ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
                          A GCAP+  T   +I GFC+ GN D  Y+ + +++  G + S   
Sbjct: 615 KLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTT 674

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +  ++  L    R+ EA  +   M+ +G+ P+
Sbjct: 675 FGRVINCLCVQHRVHEAVDIIHFMVHNGIVPE 706



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 137/272 (50%), Gaps = 7/272 (2%)

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y+  +K +   G++++A  +F+ M  + C  ++++Y+A+++ +   G  ++A ++   M+
Sbjct: 79  YIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMK 138

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
             G    P+V T+T  I+ FC       AL +L+ M + GC  N V   T++ GF  E  
Sbjct: 139 NVG--IVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENY 196

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
             EAY+L + ++  G       ++ L+  L +   ++E+E+L +K+L  G+  +    ++
Sbjct: 197 RVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNI 256

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            I+ LC  G +     + + + + G    V +  ++ L+ GLC+ ++ VEA K    ++ 
Sbjct: 257 FIQGLCRKGMLSGAMSMLDSVIREGLTPDVVT--YNTLICGLCKNSNVVEAEKYLHKLVN 314

Query: 442 KRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473
             +   G   + +++   K G   ++ N  KI
Sbjct: 315 GGLEPDGFTYNTLIDGYCKMG---MLQNAEKI 343



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 106/235 (45%), Gaps = 12/235 (5%)

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           KV +  G   +L+ Y  ++  +   G+      +L E   +  D S     Y   ++ + 
Sbjct: 29  KVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAETRMDI-DNSLLEGVYIGAMKSYG 87

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
            KG ++EA+ + +RM+   C P+ ++ + ++      G   +A+++  ++   G V    
Sbjct: 88  RKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVY 147

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            ++  +    RTKR   A +L + M++ G + + +A   ++         +E + L+ D+
Sbjct: 148 TFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDM 207

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK---------RIWLQG 448
            +IG    V +   + LL  LC+K    E+ +L   +LKK          I++QG
Sbjct: 208 LRIGIFPDVST--FNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQG 260


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 155/305 (50%), Gaps = 4/305 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V+M   I +   K +L +EA  +  +M    +  D + Y+ +I  FC  G +  A  L+
Sbjct: 446 NVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLL 505

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M L  + PD+ TY  ++      G++++A  +  VM +     ++  Y+ L++G   +
Sbjct: 506 NEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLV 565

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
             +++A  +   M   G   +P+V TYT +I  FC   M+ EAL +   M      P+ V
Sbjct: 566 YEVKKAQHVFNAMSLMG--VTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTV 623

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T S+L+ G C  G +   + LID++   G  +    Y+SL+  L +   L +A  LF+KM
Sbjct: 624 TYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKM 683

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
              G++P+    ++++  LC GG++ +   +++D+   G+   +D  I++V++ G C++ 
Sbjct: 684 KDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY--HLDVYIYNVMIYGHCKQG 741

Query: 428 HSVEA 432
              EA
Sbjct: 742 LLEEA 746



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 2/226 (0%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A  V   M    + PD   Y  +I  FC+   +  A  L K M   ++ PD +TY S++
Sbjct: 570 KAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLV 629

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C +GR+     L   M+  G  A+++ Y++L+DG+C+ G +++A+ L  +M+ +G  
Sbjct: 630 DGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQG-- 687

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PN  T+T ++   C  G +K+A  +   +   G   +    + +I G C +G L+EA 
Sbjct: 688 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEAL 747

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
            ++ K+   G + +   +  ++  L +     +AEKL  +M+A G+
Sbjct: 748 TMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 155/327 (47%), Gaps = 10/327 (3%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC++ ++  EA  VL  M +  ++ + I Y+ ++  +    ++  A  +   M L+ + P
Sbjct: 213 LCKEGKV-KEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTP 271

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFK--VMKRHGCAANLVAYSALLDGICRLGSMERALE 255
           D+ +Y  MI GFC   R++ A  LFK  ++ R      ++ ++ +LD   ++     A+ 
Sbjct: 272 DVHSYNIMINGFCKIKRVDKALNLFKEMILSRF---PPIIQFNKILDSFAKMKHYSTAVS 328

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           L   +E +G    P++ T   +I  FC  G +     +L ++   G  P+ VT++TLIKG
Sbjct: 329 LSHRLELKG--IQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKG 386

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C++G + +A    DK++A G   +   Y++L+  + +    + A KL  K+     KP+
Sbjct: 387 LCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPN 446

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
               S +I  LC    V E + L+ ++   G   S D   +S L+ G C      EA  L
Sbjct: 447 VEMYSTIIDALCKYQLVSEAYGLFSEMTVKGI--SADVVTYSTLIYGFCIVGKLKEAIGL 504

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              M+ K I         +V+ L K G
Sbjct: 505 LNEMVLKTINPDVRTYTILVDALGKEG 531



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 153/329 (46%), Gaps = 6/329 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+  LRK+     +P+  +YN +I   C+   +  A  L   M +  +  +++TY ++I 
Sbjct: 117 AIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIY 176

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC  G+L++A GL  VM       N+  Y+ L+D +C+ G ++ A  +L  M K     
Sbjct: 177 GFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKAC--V 234

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
             NV+TY++++  +     +K+A  + + M  +G  P+  + + +I GFC    +D+A  
Sbjct: 235 KSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALN 294

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  +++          ++ ++    + K    A  L  ++   G++PD    +++I   C
Sbjct: 295 LFKEMIL-SRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFC 353

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
             GQ+  GF +   I K G+  S  +   + L+ GLC K    +A      +L +   L 
Sbjct: 354 HMGQITFGFSVLAKILKRGYPPSTVT--LNTLIKGLCLKGQVKKALHFHDKLLAQGFQLN 411

Query: 448 GPYVDKIVEHLKKSGDEE-LITNLPKIGG 475
                 ++  + K GD    I  L KI G
Sbjct: 412 QVSYATLINGVCKIGDTRGAIKLLRKIDG 440



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 124/255 (48%), Gaps = 2/255 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           ++ VL K+ +    PDT+  N +I+  C KG +  A      +       + ++Y ++I 
Sbjct: 47  SLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLIN 106

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G    A    + +       N+  Y+ ++D +C+   +  A  L  EM  +G   
Sbjct: 107 GVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKG--I 164

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           S NVVTY+++I  FC  G +KEALG+L+ M      PN  T + L+   C EG + EA  
Sbjct: 165 SANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKS 224

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           ++  ++     S+   YS+L+        +K+A+ +F+ M   GV PD  + ++MI   C
Sbjct: 225 VLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFC 284

Query: 388 LGGQVLEGFCLYEDI 402
              +V +   L++++
Sbjct: 285 KIKRVDKALNLFKEM 299



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 2/155 (1%)

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           +L +L ++   G  P+ VT++TLIKG C++G + EA    DK++A G   +   Y++L+ 
Sbjct: 47  SLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLIN 106

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            + R    + A K   K+     KP+    + +I  LC    V E + L+ ++   G  +
Sbjct: 107 GVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISA 166

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +V +  +S L+ G C      EA  L   M+ K I
Sbjct: 167 NVVT--YSTLIYGFCIVGKLKEALGLLNVMVLKTI 199



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 6/165 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           C+  RI    S + D+++  ++ G    V     +I  LC+   L ++A+ +  KM +  
Sbjct: 633 CKSGRI----SYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHL-DKAIALFNKMKDQG 687

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +RP+T  +  ++   C+ G +  A E+ + +     + D+  Y  MI G C  G LE+A 
Sbjct: 688 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEAL 747

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
            +   M+ +GC  N V +  +++ + +    ++A +LL +M   G
Sbjct: 748 TMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 155/326 (47%), Gaps = 6/326 (1%)

Query: 82  IWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141
           + A LQ+     + + +  C +  ++Q   ++  +         V+ V     + +   K
Sbjct: 74  LGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTA----HAFVLDVFTYSYLMDALGK 129

Query: 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201
           A  A +A+ V   M +    PDT++YN +I    ++G +  A EL++ M    + PD  T
Sbjct: 130 AGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRT 189

Query: 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           Y  +I    + GR E A   F +MKR   + ++V Y+ LL+G+ +L   + A +L  EM+
Sbjct: 190 YNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQ 249

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
                C P++ T+ ++I      G M++AL    R+  +G  PN    + LI GFC  G 
Sbjct: 250 --ANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQ 307

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +D+ Y+L   ++          Y+ LV+   R      A +L  +M+  G  P     +V
Sbjct: 308 VDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNV 367

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGF 407
           +IR L + GQV + + L++++   GF
Sbjct: 368 LIRSLSMAGQVEDAYTLFKEMIAKGF 393



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 122/262 (46%), Gaps = 2/262 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++V    ++ GC+    +  V+ +   K    +EA+ +L  M    + PD   YN VI +
Sbjct: 137 LEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDV 196

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
               G    A      M      PD++TY +++ G     R ++AC LF  M+ + C  +
Sbjct: 197 LSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPD 256

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           L  +  L+D + + G ME ALE    + K G    PN   Y ++I  FC  G + +   +
Sbjct: 257 LTTFGTLIDTLAKAGRMEDALEQSARLVKMGH--VPNSYIYNALISGFCRSGQVDKGYEL 314

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M    C P+ +T + L+ GF   G+   A +L+ ++V  G   +   Y+ L+  L  
Sbjct: 315 FQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSM 374

Query: 354 TKRLKEAEKLFSKMLASGVKPD 375
             ++++A  LF +M+A G  PD
Sbjct: 375 AGQVEDAYTLFKEMIAKGFNPD 396



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 152/341 (44%), Gaps = 46/341 (13%)

Query: 141 KARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKG---DMIAADELMKGMGLIDLY 196
           KA   + A+ + R++  E   +P+ + ++ ++   C+     D +A  + M G GL    
Sbjct: 23  KAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGL---Q 79

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
            D+    ++I   C  G L  A  L   M  H    ++  YS L+D + + G   +ALE+
Sbjct: 80  ADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEV 139

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-------------- 302
              M+K G  C P+ V Y  +I     +G + EAL +L+ M   G               
Sbjct: 140 FSNMQKAG--CMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVL 197

Query: 303 ---------------------APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
                                +P+ VT +TL+ G       DEA  L D++ A   +   
Sbjct: 198 SSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDL 257

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             + +L+  L +  R+++A +  ++++  G  P+    + +I   C  GQV +G+ L++D
Sbjct: 258 TTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQD 317

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           + +       DS  +++L+LG  R+ H+  A +L + M+++
Sbjct: 318 MIECSCFP--DSITYTILVLGFSRRGHTSMAMELLQEMVRE 356



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 5/181 (2%)

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
           CA ++VAY+ L+ G C+ G  +RAL++   +++EG  C PN V++ +++   C      +
Sbjct: 7   CAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGS-CKPNAVSFDTLVIFLCKMSRATD 65

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           AL +   M   G   +    +TLI   C  G L +A +L+  + A   V     YS L+ 
Sbjct: 66  ALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMD 125

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--GQVLEGFCLYEDIEKIGF 407
            L +  R  +A ++FS M  +G  PD +  +V+I   CLG  G+V E   L ED+ + G 
Sbjct: 126 ALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLIS--CLGKQGKVDEALELLEDMNRKGI 183

Query: 408 L 408
           +
Sbjct: 184 M 184



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 122/273 (44%), Gaps = 5/273 (1%)

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMER 252
           D  PD++ Y ++I G+C AG  + A  +F+ +K+ G C  N V++  L+  +C++     
Sbjct: 6   DCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATD 65

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           AL +  EM   G     NV    ++I   C  GM+++A  +L  M A     +  T S L
Sbjct: 66  ALAVFQEMLGAGLQADVNVC--NTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYL 123

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +      G   +A ++   +   G +     Y+ L+  L +  ++ EA +L   M   G+
Sbjct: 124 MDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGI 183

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD    +++I  L   G+  + +  +  +++     S D   ++ LL GL +   + EA
Sbjct: 184 MPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRK--HSPDVVTYNTLLNGLKKLRRTDEA 241

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
             L   M   +          +++ L K+G  E
Sbjct: 242 CDLFDEMQANKCMPDLTTFGTLIDTLAKAGRME 274



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 3/205 (1%)

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-CAPNRVTISTLIKGFCVEG 320
           +E  DC+P+VV Y ++I  +C  G    AL +  R++  G C PN V+  TL+   C   
Sbjct: 2   RETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMS 61

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
              +A  +  +++  G  +     ++L+    R   L++A +L   M A     D    S
Sbjct: 62  RATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYS 121

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            ++  L   G+  +   ++ +++K G +   D+ +++VL+  L ++    EA +L   M 
Sbjct: 122 YLMDALGKAGRAAKALEVFSNMQKAGCMP--DTVVYNVLISCLGKQGKVDEALELLEDMN 179

Query: 441 KKRIWLQGPYVDKIVEHLKKSGDEE 465
           +K I       + +++ L   G  E
Sbjct: 180 RKGIMPDCRTYNIVIDVLSSCGRYE 204



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 7/182 (3%)

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC-YSSLVVELVRTKR 356
           E   CAP+ V  +TLI G+C  G+ D A  +  ++   GS       + +LV+ L +  R
Sbjct: 3   ETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSR 62

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
             +A  +F +ML +G++ D   C+ +I   C  G + +   L   +    F+  +D   +
Sbjct: 63  ATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFV--LDVFTY 120

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG--DE--ELITNLPK 472
           S L+  L +   + +A ++   M K          + ++  L K G  DE  EL+ ++ +
Sbjct: 121 SYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNR 180

Query: 473 IG 474
            G
Sbjct: 181 KG 182



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   ++ ++   + + M E    PD+I Y  ++  F  +G    A EL++ M   
Sbjct: 298 LISGFCRSGQV-DKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVRE 356

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
              P + TY  +I+    AG++EDA  LFK M   G   ++  YSAL
Sbjct: 357 GHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 403


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 160/313 (51%), Gaps = 9/313 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I+  C + +L+ EA+ ++ KM +F   PD + YN ++ + C+KG +  A +L+  M   
Sbjct: 218 LIYGCCIENKLS-EAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNN 276

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+  T+  ++ G+C  G L++A  +  +M ++    ++  Y+ L+ G+C+ G ++ A
Sbjct: 277 GLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEA 336

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQ--IFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
             L  EM  E     P+VVTY ++I     C   +  +   ++D+ME  G  PN VT + 
Sbjct: 337 FRLKDEM--ENLKLLPDVVTYNTLINGCFDCSSSL--KGFELIDKMEGKGVKPNAVTYNV 392

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           ++K +  EG +D A   + K+   G       +++L+    +  RL EA ++  +M   G
Sbjct: 393 VVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKG 452

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           +K + +  + ++  LC   ++ + + L     K G+   VD   +  L++G  +   SVE
Sbjct: 453 LKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYF--VDEVSYGTLIMGYFKDGKSVE 510

Query: 432 AAKLARFMLKKRI 444
           A KL   M +K I
Sbjct: 511 AMKLWDEMKEKEI 523



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 154/299 (51%), Gaps = 7/299 (2%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           ++ KM    ++P+ + YN V++ + ++G M  A   ++ M      PD +T+ ++I G+C
Sbjct: 374 LIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYC 433

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
            AGRL +A  +   M R G   N V  + +L  +C    ++ A +LL    K G     +
Sbjct: 434 KAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRG--YFVD 491

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
            V+Y ++I  +   G   EA+ + D M+     P+ +T +T+I G C  G  D++   ++
Sbjct: 492 EVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLN 551

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +++  G V     Y+++++   R  ++++A +  +KM+    KPD   C++++R LC  G
Sbjct: 552 ELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEG 611

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449
            + +   L+      G   ++D+  ++ ++ GLC+++   EA  L   M +K++   GP
Sbjct: 612 MLDKALKLFNTWISKG--KAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKL---GP 665



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 159/342 (46%), Gaps = 8/342 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  ++ +   +++D+    K  G + +     ++ +   K     EA  V+  M + ++
Sbjct: 258 CKKGKLNEARDLLLDM----KNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNV 313

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   YN +I   C+ G +  A  L   M  + L PD++TY ++I G  +         
Sbjct: 314 LPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFE 373

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M+  G   N V Y+ ++    + G M+ A   L +ME+ G   SP+ VT+ ++I  
Sbjct: 374 LIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESG--FSPDCVTFNTLING 431

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +C  G + EA  ++D M   G   N VT++T++   C E  LD+AY+L+      G    
Sbjct: 432 YCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVD 491

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y +L++   +  +  EA KL+ +M    + P  +  + MI  LC  G+  +      
Sbjct: 492 EVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLN 551

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           ++ + G +   D   ++ ++LG CR+    +A +    M+KK
Sbjct: 552 ELLESGLVP--DETTYNTIILGYCREGQVEKAFQFHNKMVKK 591



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 171/367 (46%), Gaps = 32/367 (8%)

Query: 91  RHSSFMYNRACEMSRIKQNPSIII--DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
            H++ ++NR   M R+   P+++    ++ A        SV + K IF+           
Sbjct: 156 HHAAQIFNR---MKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFS----------- 201

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
                 + +  ++ +T  +N +I   C +  +  A  L+  M     +PD ++Y +++  
Sbjct: 202 -----DVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDV 256

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C  G+L +A  L   MK +G   N   ++ L+ G C+LG ++ A +++  M +   +  
Sbjct: 257 LCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQ--NNVL 314

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG-FCVEGNLDEAYQ 327
           P+V TY  +I   C  G + EA  + D ME L   P+ VT +TLI G F    +L + ++
Sbjct: 315 PDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSL-KGFE 373

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           LIDK+   G   +   Y+ +V   V+  ++  A     KM  SG  PD +  + +I   C
Sbjct: 374 LIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYC 433

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
             G++ E F + +++ + G    ++S   + +L  LC +    +A KL     K+     
Sbjct: 434 KAGRLSEAFRMMDEMSRKGL--KMNSVTLNTILHTLCGERKLDDAYKLLSSASKR----- 486

Query: 448 GPYVDKI 454
           G +VD++
Sbjct: 487 GYFVDEV 493



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 133/267 (49%), Gaps = 3/267 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I   C+  RL+ EA  ++ +M    L+ +++  N ++   C +  +  A +L+ 
Sbjct: 423 VTFNTLINGYCKAGRLS-EAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLS 481

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
                  + D ++Y ++I G+   G+  +A  L+  MK      +++ Y+ ++ G+C  G
Sbjct: 482 SASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSG 541

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
             +++++ L E+ + G    P+  TY ++I  +C +G +++A    ++M      P+  T
Sbjct: 542 KTDQSIDKLNELLESG--LVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFT 599

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + L++G C EG LD+A +L +  ++ G       Y++++  L +  R +EA  L ++M 
Sbjct: 600 CNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEME 659

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEG 395
              + PD    + ++  L   G++ E 
Sbjct: 660 EKKLGPDCYTYNAILSALADAGRMKEA 686



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 154/333 (46%), Gaps = 28/333 (8%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           SV +  ++  LC + +L ++A  +L    +     D + Y  +I  + + G  + A +L 
Sbjct: 457 SVTLNTILHTLCGERKL-DDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLW 515

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M   ++ P IITY +MI G C++G+ + +      +   G   +   Y+ ++ G CR 
Sbjct: 516 DEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCRE 575

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +E+A +   +M K+     P++ T   +++  C +GM+ +AL + +   + G A + V
Sbjct: 576 GQVEKAFQFHNKMVKKS--FKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAV 633

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T +T+I G C E   +EA+ L+ ++           Y++++  L    R+KEAE+  S++
Sbjct: 634 TYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRI 693

Query: 368 LASG-----------------------VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +  G                         P+ +  S  I ELC  G+  +   + ++  +
Sbjct: 694 VEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQ 753

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
            G   ++    +  L+ GL ++  S+  + L+R
Sbjct: 754 KGI--TLHKSTYISLMEGLIKRRKSISRSCLSR 784



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 5/209 (2%)

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL---ELLGEMEK 262
           I  +    R   A  +F  MKR     NL+  + L++ + R  S         +  ++ K
Sbjct: 146 IGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIK 205

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G   + N  T+  +I   C +  + EA+G++ +M+   C P+ V+ +T++   C +G L
Sbjct: 206 LGVKVNTN--TFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKL 263

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           +EA  L+  +   G + +   ++ LV    +   LKEA ++   M  + V PD    +++
Sbjct: 264 NEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNML 323

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           I  LC  G++ E F L +++E +  L  V
Sbjct: 324 IGGLCKDGKIDEAFRLKDEMENLKLLPDV 352


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 143/269 (53%), Gaps = 3/269 (1%)

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           +N +I    ++G M  A  +   M    + PD++TY ++I  FC  GRL DA   F  M 
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G   N V Y +L+ G C  G + +A EL+ EM  +G    PN+V ++S+I   C +G 
Sbjct: 502 SIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIP-RPNIVFFSSIIHSLCNEGR 560

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + +A  + + +  +G  P  VT ++LI G+C+ G +++A+ ++D +V+ G       Y++
Sbjct: 561 VMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNT 620

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           LV    ++ ++ +   LF +ML   VKP  +  S+++  L   G+      ++ ++   G
Sbjct: 621 LVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSG 680

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             ++VD D + +LL GLCR + + EA  L
Sbjct: 681 --TAVDIDTYKILLKGLCRNDLTDEAITL 707



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 178/382 (46%), Gaps = 14/382 (3%)

Query: 69  CFPSQSQMGIRFF---IWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGC 125
           C   +  +G  FF   + A L++    ++      C   R  +   +++       + GC
Sbjct: 167 CRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLL---HRMSDLGC 223

Query: 126 VV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR--PDTIIYNNVIRLFCEKGDMIA 182
           V  ++    VI +LC  +R + EA+ ++++M +   R  PD + +N VI  F ++G++  
Sbjct: 224 VPNAISYNTVIKSLCGDSR-SQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSK 282

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A  L+  M    + PD++TY S++   C A  ++ A  + + M   G   + + Y+A++ 
Sbjct: 283 ACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIH 342

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G    G  + + ++  +M  +G    P +VT+ S +   C  G  K+A  I   M   G 
Sbjct: 343 GYSCSGHWKESAKMFRKMTSKG--LIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGH 400

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+ V+ S L+ G+  EG   +   L   +   G V++  C++ L+    +   + EA  
Sbjct: 401 MPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAML 460

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422
           +F++M   GV+PD +  S +I   C  G++ +    +  +  IG     ++ ++  L+ G
Sbjct: 461 VFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGL--EPNTVVYHSLIHG 518

Query: 423 LCRKNHSVEAAKLARFMLKKRI 444
            C     V+A +L   M+ K I
Sbjct: 519 FCMHGDLVKAKELVSEMMSKGI 540



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 137/314 (43%), Gaps = 39/314 (12%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM- 187
           V    +I   C   RLA +AM    +M    L P+T++Y+++I  FC  GD++ A EL+ 
Sbjct: 475 VTYSTLISAFCRMGRLA-DAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVS 533

Query: 188 ----KG----------------------MGLIDLY---------PDIITYVSMIKGFCNA 212
               KG                      M   D++         P I+T+ S+I G+C  
Sbjct: 534 EMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLV 593

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G++E A G+   M   G   ++V Y+ L+ G C+ G ++  L L  EM  +     P  V
Sbjct: 594 GKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHK--KVKPTTV 651

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           TY+ V+      G    A  +   M   G A +  T   L+KG C     DEA  L  K+
Sbjct: 652 TYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKL 711

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            A          ++++  L + +R +EA  LF+ +  SG+ P+     VMI  L   G V
Sbjct: 712 GAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSV 771

Query: 393 LEGFCLYEDIEKIG 406
            E   ++  +EK G
Sbjct: 772 EEADTMFSSMEKSG 785



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 136/286 (47%), Gaps = 14/286 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LC + R+  +A  V   +     RP  + +N++I  +C  G M  A  ++  M  +
Sbjct: 551 IIHSLCNEGRVM-DAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSV 609

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD++TY +++ G+C +G+++D   LF+ M         V YS +LDG+   G    A
Sbjct: 610 GIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAA 669

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++  EM   G   + ++ TY  +++  C   +  EA+ +  ++ A+ C  +   ++T+I
Sbjct: 670 KKMFHEMIDSG--TAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVI 727

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
                    +EA  L   +   G V +   Y  ++  L++   ++EA+ +FS M  SG  
Sbjct: 728 NALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCA 787

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG-FLSSVDSDIHSV 418
           P     + +IR L   G          DI K G ++S VD  I S+
Sbjct: 788 PSSRLLNDIIRMLLQKG----------DIVKAGYYMSKVDGTIISL 823



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 119/245 (48%), Gaps = 7/245 (2%)

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE-LLGE 259
           TY  ++   C A R +     F  + R G     +  +  L  +C     + A++ LL  
Sbjct: 158 TYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHR 217

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG--CAPNRVTISTLIKGFC 317
           M   G  C PN ++Y +VI+  CG    +EAL ++ RM   G  C+P+ V+ +T+I GF 
Sbjct: 218 MSDLG--CVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFF 275

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            +G + +A  LI+++V  G       Y+S+V  L + + + +AE +  +M+  GV+PDGL
Sbjct: 276 KQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGL 335

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             + +I      G   E   ++  +   G +  + +   +  +  LC+   S +A ++ +
Sbjct: 336 TYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVT--FNSFMSSLCKHGRSKDAEEIFQ 393

Query: 438 FMLKK 442
           +M  K
Sbjct: 394 YMTTK 398



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 10/177 (5%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           + G  V +   K++     +  L +EA+ +  K+   D + D  I N VI    +     
Sbjct: 678 DSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRRE 737

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A++L   +    L P++ TY  MI      G +E+A  +F  M++ GCA +    S LL
Sbjct: 738 EANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPS----SRLL 793

Query: 242 DGICRL----GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + I R+    G + +A   + ++  +G   S    T + ++ +F  KG  +E +  L
Sbjct: 794 NDIIRMLLQKGDIVKAGYYMSKV--DGTIISLEASTTSLLMSLFSSKGKHREQIKFL 848


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 159/321 (49%), Gaps = 10/321 (3%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE--FDLR--PDTIIYNNVIRLFCEKGD 179
           GC   V+    + +   +AR  ++A      +    F  R  P+   YN ++R  C +GD
Sbjct: 115 GCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGD 174

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           +  A  L   +    L PD ITY +++ GF    RL++A  L   M  +    + V Y+A
Sbjct: 175 LDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNA 234

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           LL G  R G  E+A+ +  ++ ++ G  SPN+ TY  ++   C  GM KEA  + +RM A
Sbjct: 235 LLGGCFRNGEFEKAMRVWEQLVRDPG-ASPNLATYNVMLDGLCKLGMFKEAGDVWERMVA 293

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
               P+ +T  T+I G C   ++D A ++  +++  G V     Y+SL+       R+ E
Sbjct: 294 NNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGE 353

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A K +  M  SG++ +  + ++M++ L  GG V +   L+E +EK   LS  D    S +
Sbjct: 354 AWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSP-DMVTFSTM 411

Query: 420 LLGLCRK---NHSVEAAKLAR 437
           + GLC K   N S++  + AR
Sbjct: 412 IHGLCEKGFANKSLQILEEAR 432



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 160/322 (49%), Gaps = 4/322 (1%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           ++ G   ++    V+ +   K  +  EA  V  +M   + +PD I Y  +I   C   D+
Sbjct: 257 RDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDV 316

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
            +A  +   M    L PD++ Y S++KGFC+AGR+ +A   +  M   G   N+ +Y+ +
Sbjct: 317 DSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIM 375

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           L G+   G +++A +L   +EK+    SP++VT++++I   C KG   ++L IL+     
Sbjct: 376 LKGLFDGGMVDKATDLWELLEKDDS-LSPDMVTFSTMIHGLCEKGFANKSLQILEEARTS 434

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G   +  + S++I G C +G LD+A +L +K+       +   Y++L+    +  +  +A
Sbjct: 435 GKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDA 494

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +++S+M  +   P  +  + +I  LC   + LE      ++ + G +  +D + +  L+
Sbjct: 495 IRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCM--LDVNTYGSLI 552

Query: 421 LGLCRKNHSVEAAKLARFMLKK 442
            GLCR      A  L   +L K
Sbjct: 553 RGLCRDKKIDGALALWNQILDK 574



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 156/339 (46%), Gaps = 47/339 (13%)

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD----MIAADELMKGMGLIDLYPD 198
           RL N A+++L +MP ++++PD + YN ++      G+    M   ++L++  G     P+
Sbjct: 209 RLDN-ALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPG---ASPN 264

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           + TY  M+ G C  G  ++A  +++ M  +    +++ Y  ++ G+CR   ++ A  +  
Sbjct: 265 LATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYS 324

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC---------------- 302
           EM K G    P+VV Y S+++ FC  G + EA    D M   G                 
Sbjct: 325 EMIKTG--LVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVTSYNIMLKGLFDG 382

Query: 303 -------------------APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
                              +P+ VT ST+I G C +G  +++ Q++++    G       
Sbjct: 383 GMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFS 442

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           YSS++  L +  RL +A KL+ K+     KP+    + +I   C   +  +   +Y  + 
Sbjct: 443 YSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMA 502

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +     S  +  ++ L+ GLC+    +EA++  R ML+K
Sbjct: 503 END--CSPTTITYNTLIHGLCKAEKYLEASRFTREMLEK 539



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 128/260 (49%), Gaps = 4/260 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  RL ++A+ +  K+     +P++ IYN +I  FC+      A  +   M   
Sbjct: 446 MISGLCKDGRL-DDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAEN 504

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           D  P  ITY ++I G C A +  +A    + M   GC  ++  Y +L+ G+CR   ++ A
Sbjct: 505 DCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGA 564

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM-EALGCAPNRVTISTL 312
           L L  ++  +G     +VV +  +I   C  G + EA  +L  M E   C PN VT +TL
Sbjct: 565 LALWNQILDKG--LQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTL 622

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           + GF   G  D+A  L   ++  G V     Y++ +  L    R  E  +L ++MLASG+
Sbjct: 623 MDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGI 682

Query: 373 KPDGLACSVMIRELCLGGQV 392
            P  +  ++++R +   G +
Sbjct: 683 IPTAITWNILVRAVIKYGPI 702



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 134/284 (47%), Gaps = 4/284 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LCEK   AN+++ +L +        D   Y+++I   C+ G +  A +L +
Sbjct: 406 VTFSTMIHGLCEKG-FANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYE 464

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            + +    P+   Y ++I GFC A +  DA  ++  M  + C+   + Y+ L+ G+C+  
Sbjct: 465 KISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAE 524

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               A     EM ++G  C  +V TY S+I+  C    +  AL + +++   G   + V 
Sbjct: 525 KYLEASRFTREMLEKG--CMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVM 582

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG-CYSSLVVELVRTKRLKEAEKLFSKM 367
            + LI G C  G +DEA QL+ ++    +       Y++L+     T    +A  L+  +
Sbjct: 583 HNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAI 642

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
           L +G+ PD ++ +  I+ LC   +  EG  L  ++   G + + 
Sbjct: 643 LENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTA 686



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 5/216 (2%)

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKE--GGDCSPNVVTYTSVIQIFCGKGM 286
           GC   + +++ALLD   R      A      +     G   +PN+ TY  +++  C +G 
Sbjct: 115 GCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGD 174

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +  A+ + D +   G AP+R+T STL+ GF     LD A  L+D++ +        CY++
Sbjct: 175 LDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNA 234

Query: 347 LVVELVRTKRLKEAEKLFSKMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           L+    R    ++A +++ +++   G  P+    +VM+  LC  G   E   ++E +  +
Sbjct: 235 LLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERM--V 292

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
                 D   +  ++ GLCR      AA++   M+K
Sbjct: 293 ANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIK 328



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 122 EEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGD 179
           ++G    V M  + I  LC   ++ +EA  +L +M E  +  P+ + YN ++  F E G 
Sbjct: 573 DKGLQTDVVMHNILIHGLCSAGKV-DEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGC 631

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
              A  L   +    L PDII+Y + IKG C+  R  +   L   M   G     + ++ 
Sbjct: 632 FDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNI 691

Query: 240 LLDGICRLGSME 251
           L+  + + G ++
Sbjct: 692 LVRAVIKYGPIQ 703


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 153/289 (52%), Gaps = 4/289 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EAM ++ ++      P+ +IYN +I   CEKG +  A +++K M  + + PD++TY S+I
Sbjct: 167 EAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLI 226

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
               ++G    +  +   M R G + +++ +SAL+D   + G +  A +   EM +    
Sbjct: 227 TRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRS-- 284

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            +PN+VTY S+I   C  G++ EA  +L+ + + G  PN VT +TLI G+C    +D+  
Sbjct: 285 VNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGM 344

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +++  +   G       Y++L     +  +   AEK+  +M++ GV PD    ++++  L
Sbjct: 345 KILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGL 404

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           C  G++ +     ED++K   +  + +  +++++ GLC+ +   +A  L
Sbjct: 405 CDHGKIGKALVRLEDLQKSKTVVGIIT--YNIIIKGLCKADKVEDAWYL 451



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 41/344 (11%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C ++R  +  S++  +V    E   V+      +I +LCEK ++ N A+ VL+ M
Sbjct: 155 LVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVI---YNTIIDSLCEKGQV-NTALDVLKHM 210

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDM-----IAADELMKGM--------GLIDLY------ 196
            +  +RPD + YN++I      G       I +D +  G+         LID+Y      
Sbjct: 211 KKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQL 270

Query: 197 ----------------PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
                           P+I+TY S+I G C  G L++A  +  V+   G   N V Y+ L
Sbjct: 271 LEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTL 330

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++G C+   ++  +++L  M ++G D   +  TY ++ Q +C  G    A  +L RM + 
Sbjct: 331 INGYCKAKRVDDGMKILCVMSRDGVD--GDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSC 388

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G  P+  T + L+ G C  G + +A   ++ +    +V     Y+ ++  L +  ++++A
Sbjct: 389 GVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDA 448

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
             LF  +   GV PD +    M+  L       E   LY  ++K
Sbjct: 449 WYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQK 492



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 135/281 (48%), Gaps = 21/281 (7%)

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
           +I +N+ + LFC   DM  +  L          P I+ +  ++       + E    LF+
Sbjct: 57  SIKFNDALTLFC---DMAESHPL----------PSIVDFSRLLIAIAKLNKYEAVISLFR 103

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            ++  G + +L +++ L+D  CR   +  AL  LG+M K G +  P++VT+ S++  FC 
Sbjct: 104 HLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFE--PSIVTFGSLVNGFCH 161

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
                EA+ ++D++  LG  PN V  +T+I   C +G ++ A  ++  +   G       
Sbjct: 162 VNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVT 221

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y+SL+  L  +     + ++ S M+  G+ PD +  S +I      GQ+LE    Y ++ 
Sbjct: 222 YNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMI 281

Query: 404 KIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           +     SV+ +I  ++ L+ GLC      EA K+   ++ K
Sbjct: 282 Q----RSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSK 318



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 137/290 (47%), Gaps = 4/290 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A+ +   M E    P  + ++ ++    +     A   L + + ++ +  D+ ++ ++
Sbjct: 61  NDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTL 120

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC   RL  A      M + G   ++V + +L++G C +     A+ L+ ++   G 
Sbjct: 121 IDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGY 180

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  PNVV Y ++I   C KG +  AL +L  M+ +G  P+ VT ++LI      G    +
Sbjct: 181 E--PNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVS 238

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            +++  ++  G       +S+L+    +  +L EA+K +++M+   V P+ +  + +I  
Sbjct: 239 ARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLING 298

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           LC+ G + E   +   +   GF  +  +  ++ L+ G C+     +  K+
Sbjct: 299 LCIHGLLDEAKKVLNVLVSKGFFPNAVT--YNTLINGYCKAKRVDDGMKI 346



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 35/160 (21%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD-- 198
           KA+  ++ M +L  M    +  DT  YN + + +C+ G   AA++++  M    ++PD  
Sbjct: 336 KAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMY 395

Query: 199 ---------------------------------IITYVSMIKGFCNAGRLEDACGLFKVM 225
                                            IITY  +IKG C A ++EDA  LF  +
Sbjct: 396 TFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSL 455

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
              G + +++ Y  ++ G+ R      A EL  +M+KE G
Sbjct: 456 ALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKEDG 495


>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Glycine max]
          Length = 875

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 166/346 (47%), Gaps = 26/346 (7%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL-IDL---Y 196
           +  + NEA  ++ +M E  + PD + +N+ I   C  G ++ A  + + M +  +L    
Sbjct: 231 REEMNNEAERLVERMNELGVLPDVVTFNSRISALCRAGKVMEASRIFRDMQMDAELGLPR 290

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+++T+  M+KGFC  G + DA GL + MK+ G   +L  Y+  L G+ R G +  A  +
Sbjct: 291 PNVVTFNLMLKGFCKHGMMGDARGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEARLV 350

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L EM  +G    PN  TY  ++   C   M+ +A G++D M   G  P+ V  STL+ G+
Sbjct: 351 LDEMVAKG--IEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGY 408

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G + EA  ++ +++  G   +    ++L+  L +  R  EAE++  KM     +PD 
Sbjct: 409 CSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDT 468

Query: 377 LACSVMIRELCLGGQVLEGFCLYED--------IEKIGFLSSVDSDIHSV---------- 418
           + C++++  LC  G++ +   +  +        ++K    +S+ + IH+V          
Sbjct: 469 VTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDGITY 528

Query: 419 --LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
             L+ GLC+     EA K    ML K +       D  +    K G
Sbjct: 529 TTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQG 574



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 170/395 (43%), Gaps = 75/395 (18%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-----LCEKARLANEAMWVLRKM---PEFDL-RPDTII 166
           +VE   E G +  V    V FN     LC   ++  EA  + R M    E  L RP+ + 
Sbjct: 241 LVERMNELGVLPDV----VTFNSRISALCRAGKVM-EASRIFRDMQMDAELGLPRPNVVT 295

Query: 167 YNNVIRLFCEKGDMIAAD---ELMKGMGLID----------------------------- 194
           +N +++ FC+ G M  A    E MK +G  D                             
Sbjct: 296 FNLMLKGFCKHGMMGDARGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMV 355

Query: 195 ---LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
              + P+  TY  M+ G C    L DA GL  +M R+G   + VAYS LL G C  G + 
Sbjct: 356 AKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVF 415

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
            A  +L EM + G  C PN  T  +++     +G   EA  +L +M      P+ VT + 
Sbjct: 416 EAKSVLHEMIRNG--CQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNI 473

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVS----------------------SGGCYSSLVV 349
           ++ G C  G LD+A +++ ++   G  S                       G  Y++L+ 
Sbjct: 474 VVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDGITYTTLIN 533

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
            L +  RL+EA+K F +MLA  ++PD +     I   C  G++   F + +D+E+ G   
Sbjct: 534 GLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSK 593

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           ++ +  ++ L+LGL   N   E   L   M +K I
Sbjct: 594 TLQT--YNALILGLGSNNQIFEIYGLKDEMKEKGI 626



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 11/297 (3%)

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
           W+   M    + P T  +N +I   CE      A +L + M      P+  T   +++G 
Sbjct: 136 WLYSDMLAARVAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGL 195

Query: 210 CNAGRLEDACGLFKVMKRHGCA-ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
           C AG ++ A  L  V   + C  AN V Y+ L+   CR      A  L+  M + G    
Sbjct: 196 CRAGLVKQALEL--VNNNNSCRIANRVVYNTLVSRFCREEMNNEAERLVERMNELG--VL 251

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRME---ALGCA-PNRVTISTLIKGFCVEGNLDE 324
           P+VVT+ S I   C  G + EA  I   M+    LG   PN VT + ++KGFC  G + +
Sbjct: 252 PDVVTFNSRISALCRAGKVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGD 311

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  L++ +   G+  S  CY+  ++ L+R   L EA  +  +M+A G++P+    ++M+ 
Sbjct: 312 ARGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMD 371

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            LC    + +   L + + + G     D+  +S LL G C +    EA  +   M++
Sbjct: 372 GLCRNHMLSDARGLMDLMMRNGVYP--DTVAYSTLLHGYCSRGKVFEAKSVLHEMIR 426



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 153/311 (49%), Gaps = 6/311 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LCE +R  + A+ +  KMP+    P+      ++R  C  G +  A EL+      
Sbjct: 156 LIHSLCE-SRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVKQALELVNNNNSC 214

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  + + Y +++  FC      +A  L + M   G   ++V +++ +  +CR G +  A
Sbjct: 215 RI-ANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNSRISALCRAGKVMEA 273

Query: 254 LELLGEMEKEG--GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
             +  +M+ +   G   PNVVT+  +++ FC  GMM +A G+++ M+ +G   +    + 
Sbjct: 274 SRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVETMKKVGNFDSLECYNI 333

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
            + G    G L EA  ++D++VA G   +   Y+ ++  L R   L +A  L   M+ +G
Sbjct: 334 WLMGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNG 393

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           V PD +A S ++   C  G+V E   +  ++ + G     ++   + LL  L ++  ++E
Sbjct: 394 VYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNG--CQPNTYTCNTLLHSLWKEGRTLE 451

Query: 432 AAKLARFMLKK 442
           A ++ + M +K
Sbjct: 452 AEEMLQKMNEK 462



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 134/322 (41%), Gaps = 55/322 (17%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  VL +M    + P+   YN ++   C    +  A  LM  M    +YPD + Y +++
Sbjct: 346 EARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLL 405

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL------------------------- 241
            G+C+ G++ +A  +   M R+GC  N    + LL                         
Sbjct: 406 HGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQ 465

Query: 242 ----------DGICRLGSMERALELLGEMEKEG--------------------GDCSPNV 271
                     +G+CR G +++A E++ EM   G                     +C P+ 
Sbjct: 466 PDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDG 525

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
           +TYT++I   C  G ++EA      M A    P+ VT  T I  FC +G +  A++++  
Sbjct: 526 ITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKD 585

Query: 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           +   G   +   Y++L++ L    ++ E   L  +M   G+ PD    + +I  LC GG+
Sbjct: 586 MERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGK 645

Query: 392 VLEGFCLYEDIEKIGFLSSVDS 413
             +   L  ++   G   +V S
Sbjct: 646 AKDAISLLHEMLDKGISPNVSS 667



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 167/394 (42%), Gaps = 31/394 (7%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   ++ +  S++ +++      GC  +      + +   K     EA  +L+KM E   
Sbjct: 409 CSRGKVFEAKSVLHEMIR----NGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCY 464

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGM----------------------GLIDLYPD 198
           +PDT+  N V+   C  G++  A E++  M                       + +  PD
Sbjct: 465 QPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPD 524

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            ITY ++I G C  GRLE+A   F  M       + V Y   +   C+ G +  A  +L 
Sbjct: 525 GITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLK 584

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +ME+ G  CS  + TY ++I        + E  G+ D M+  G +P+  T + +I   C 
Sbjct: 585 DMERNG--CSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCE 642

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G   +A  L+ +++  G   +   +  L+    ++   K A +LF   L    + + L 
Sbjct: 643 GGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSDFKVACELFEVALNICGRKEALY 702

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            S+M  EL  GGQ+ E   L+E +    +L ++ + ++  L+  LC+     +A  L   
Sbjct: 703 -SLMFNELLAGGQLSEAKELFE-VSLDRYL-TLKNFMYKDLIARLCQDERLADANSLLYK 759

Query: 439 MLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472
           ++ K           +++ L K G++     L K
Sbjct: 760 LIDKGYGFDHASFMPVIDGLSKRGNKRQADELAK 793



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 16/261 (6%)

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLGSMERALELLG 258
           + +SM++     G ++DA   FK ++      + +L  Y+ LL    R         L  
Sbjct: 80  SLISMVRVLAQLGHVDDAITHFKSLRAQFPSLSPSLPLYNLLLRSTLRHHRPGFVSWLYS 139

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +M       +P   T+  +I   C       AL + ++M   GC PN  T+  L++G C 
Sbjct: 140 DML--AARVAPQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCR 197

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G + +A +L++   +   +++   Y++LV    R +   EAE+L  +M   GV PD + 
Sbjct: 198 AGLVKQALELVNNNNS-CRIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVT 256

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLA 436
            +  I  LC  G+V+E   ++ D++    L     ++   +++L G C+     +A  L 
Sbjct: 257 FNSRISALCRAGKVMEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLV 316

Query: 437 RFMLK---------KRIWLQG 448
             M K           IWL G
Sbjct: 317 ETMKKVGNFDSLECYNIWLMG 337



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 3/180 (1%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M E  + PD   YNN+I   CE G    A  L+  M    + P++ ++  +IK F  + 
Sbjct: 620 EMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSS 679

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
             + AC LF+V   + C      YS + + +   G +  A EL  E+  +      N + 
Sbjct: 680 DFKVACELFEV-ALNICGRKEALYSLMFNELLAGGQLSEAKELF-EVSLDRYLTLKNFM- 736

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y  +I   C    + +A  +L ++   G   +  +   +I G    GN  +A +L  +++
Sbjct: 737 YKDLIARLCQDERLADANSLLYKLIDKGYGFDHASFMPVIDGLSKRGNKRQADELAKRMM 796


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 157/316 (49%), Gaps = 4/316 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ V ++M    + PD + +N ++   C+ G +  A ++   M +    PD+ +Y  M+
Sbjct: 307 EAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 366

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+   G L D   LF +M   G A  +  ++ L+      G +++A+ +  EM   G  
Sbjct: 367 NGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHG-- 424

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PNV+TYT+VI   C  G M +A+   ++M   G AP++     LI+GFC  G+L +A 
Sbjct: 425 VKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 484

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +LI +++  G       +SS++  L +  R+ +A+ +F   +  G+ P  +  S+++   
Sbjct: 485 ELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGY 544

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           CL G++ +   +++ +   G     +  ++  L+ G C+     E   L R ML+K I  
Sbjct: 545 CLVGKMEKALRVFDAMVSAGI--EPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 602

Query: 447 QGPYVDKIVEHLKKSG 462
                + I++ L ++G
Sbjct: 603 STILYNIIIDGLFEAG 618



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 149/290 (51%), Gaps = 4/290 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A  + ++M +  + PD + Y++V+   C+   M  A+  ++ M    + P+  TY ++
Sbjct: 236 NKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNL 295

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G+ + G+ ++A  +FK M+R     ++V ++ L+  +C+ G ++ A ++   M  +G 
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  P+V +Y  ++  +  KG + +   + D M   G AP   T + LIK +   G LD+A
Sbjct: 356 N--PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKA 413

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             + +++   G   +   Y++++  L R  ++ +A + F++M+  GV PD  A   +I+ 
Sbjct: 414 MIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQG 473

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            C  G +L+   L  +I   G    +D  + S ++  LC+    ++A  +
Sbjct: 474 FCTHGSLLKAKELISEIMNNGM--HLDIVLFSSIINNLCKLGRVMDAQNI 521



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 144/322 (44%), Gaps = 11/322 (3%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--GLIDL 195
            CE  R       +L + PE    PD   Y+ +++  C++G    AD+L++ M  G    
Sbjct: 156 FCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVC 215

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            PD++ Y ++I GF   G +  AC LFK M + G   + V YS+++  +C+  +M++A  
Sbjct: 216 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
            L +M  +G    PN  TY ++I  +   G  KEA+ +   M      P+ VT + L+  
Sbjct: 276 FLRQMVNKG--VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGS 333

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C  G + EA  + D +   G       Y+ ++        L +   LF  ML  G+ P 
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPV 393

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
               +V+I+     G + +   ++ ++   G   +V +  ++ ++  LCR     +A + 
Sbjct: 394 ICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLT--YTTVIAALCRIGKMDDAMEK 451

Query: 436 ARFMLKKRIWLQGPYVDKIVEH 457
              M+      QG   DK   H
Sbjct: 452 FNQMID-----QGVAPDKYAYH 468



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 141/302 (46%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC   ++ ++AM    +M +  + PD   Y+ +I+ FC  G ++ A EL+  +   
Sbjct: 435 VIAALCRIGKM-DDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN 493

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            ++ DI+ + S+I   C  GR+ DA  +F +    G     V YS L+DG C +G ME+A
Sbjct: 494 GMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKA 553

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L +   M   G    PN V Y +++  +C  G + E L +   M   G  P+ +  + +I
Sbjct: 554 LRVFDAMVSAG--IEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII 611

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G    G    A     ++   G   +   YS ++  L + +   EA  LF ++ A  VK
Sbjct: 612 DGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVK 671

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            D +  + MI  +    +V E   L+  I + G +  V +  +S+++  L ++    EA 
Sbjct: 672 IDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVT--YSIMITNLIKEGLVEEAE 729

Query: 434 KL 435
            +
Sbjct: 730 DM 731



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 3/244 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACG-LFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           DII    ++KGFC A R ++A   L       GC  ++ +YS LL  +C  G   +A +L
Sbjct: 145 DIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 204

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M + G  CSP+VV Y +VI  F  +G + +A  +   M   G  P+ VT S+++   
Sbjct: 205 LRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHAL 264

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    +D+A   + ++V  G + +   Y++L+     T + KEA ++F +M    + PD 
Sbjct: 265 CKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDV 324

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  ++++  LC  G++ E   +++ +   G    V S  ++++L G   K   V+   L 
Sbjct: 325 VTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS--YNIMLNGYATKGCLVDMTDLF 382

Query: 437 RFML 440
             ML
Sbjct: 383 DLML 386



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 129/274 (47%), Gaps = 3/274 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I NLC+  R+  +A  +        L P  ++Y+ ++  +C  G M  A  +   M   
Sbjct: 505 IINNLCKLGRVM-DAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSA 563

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ + Y +++ G+C  GR+++   LF+ M + G   + + Y+ ++DG+   G    A
Sbjct: 564 GIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPA 623

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
                EM + G   + N  TY+ V++         EA+ +   + A+    + +T++T+I
Sbjct: 624 KVKFHEMTESG--IAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMI 681

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G      ++EA  L   +   G V     YS ++  L++   ++EAE +FS M  +G +
Sbjct: 682 AGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 741

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           PD    + ++REL    +++        I++  F
Sbjct: 742 PDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNF 775



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 72/154 (46%), Gaps = 2/154 (1%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K R  +EA+++ +++   +++ D I  N +I    +   +  A +L   +    L P ++
Sbjct: 651 KNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVV 710

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  MI      G +E+A  +F  M+  GC  +    + ++  + +   + RA   L ++
Sbjct: 711 TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 770

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           ++   + S   +T   ++ +F  KG  +E +  L
Sbjct: 771 DER--NFSLEHLTTMLLVDLFSSKGTCREHIRFL 802


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 147/290 (50%), Gaps = 12/290 (4%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +L KM E  ++PD +IY+ +I   C+ G    A  L   M    + P++ TY  MI 
Sbjct: 64  ALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMID 123

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC+ GR  DA  L + M       +++ ++AL+    + G +  A +L  EM       
Sbjct: 124 GFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC--I 181

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+ VTY S+I  FC      +A  + D M     +P+ VT +T+I  +C    +DE  Q
Sbjct: 182 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQ 237

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+ ++   G V++   Y++L+        L  A+ LF +M++ GV PD + C++++   C
Sbjct: 238 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFC 297

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKL 435
              ++ E   L+E I+    +S +D D   +++++ G+C+ +   EA  L
Sbjct: 298 ENEKLEEALELFEVIQ----MSKIDLDTVAYNIIIHGMCKGSKVDEAWDL 343



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 138/290 (47%), Gaps = 8/290 (2%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E  L P  I +N +I   C +G ++ A  L+  M    L+ D++TY +++ G C  G 
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            + A  L   M+      ++V YSA++D +C+ G    A  L  EM ++G   +PNV TY
Sbjct: 61  TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKG--IAPNVFTY 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +I  FC  G   +A  +L  M      P+ +T + LI     EG L EA +L D+++ 
Sbjct: 119 NCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLH 178

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                    Y+S++    +  R  +A+ +F  M +    PD +  + +I   C   +V E
Sbjct: 179 RCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDE 234

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           G  L  +I + G +++  +  ++ L+ G C  ++   A  L + M+   +
Sbjct: 235 GMQLLREISRRGLVANTTT--YNTLIHGFCEVDNLNAAQDLFQEMISHGV 282



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 34/305 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C   R + +A  +LR M E ++ PD + +N +I    ++G +  A++L   M   
Sbjct: 121 MIDGFCSFGRWS-DAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHR 179

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVM---------------------------- 225
            ++PD +TY SMI GFC   R +DA  +F +M                            
Sbjct: 180 CIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLL 239

Query: 226 ---KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
               R G  AN   Y+ L+ G C + ++  A +L  EM   G    P+ +T   ++  FC
Sbjct: 240 REISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHG--VCPDTITCNILLYGFC 297

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
               ++EAL + + ++      + V  + +I G C    +DEA+ L   +   G      
Sbjct: 298 ENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQ 357

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            Y+ ++        + +A  LF KM  +G +PD    + +IR     G++ +   L  ++
Sbjct: 358 TYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 417

Query: 403 EKIGF 407
              GF
Sbjct: 418 RSNGF 422



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 124/284 (43%), Gaps = 32/284 (11%)

Query: 64  EVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSI-----IIDV- 116
           E+LHRC FP         + +       +H+ F  + A  M  +  +P +     IIDV 
Sbjct: 175 EMLHRCIFPDTVTYNSMIYGFC------KHNRF--DDAKHMFDLMASPDVVTFNTIIDVY 226

Query: 117 ------------VEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPD 163
                       +      G V +      +I   CE   L N A  + ++M    + PD
Sbjct: 227 CRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNL-NAAQDLFQEMISHGVCPD 285

Query: 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
           TI  N ++  FCE   +  A EL + + +  +  D + Y  +I G C   ++++A  LF 
Sbjct: 286 TITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFC 345

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            +  HG   ++  Y+ ++ G C   ++  A  L  +M+  G +  P+  TY ++I+    
Sbjct: 346 SLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE--PDNSTYNTLIRGCLK 403

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            G + +++ ++  M + G + +  TI  ++     +G LD+++ 
Sbjct: 404 AGEIDKSIELISEMRSNGFSGDAFTIK-MVADLITDGRLDKSFS 446


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 183/374 (48%), Gaps = 14/374 (3%)

Query: 65  VLHRCFPSQSQMGIRFFIWAALQS-SYRHS----SFMYNRACEMSRIKQNPSIIIDVVEA 119
           +L  CF  +SQ+ +   +   +    Y  +    S + N  C   RI +  +++  +   
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180

Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
             +   V    ++  +F L  KA   +EAM ++ +M     +PD + Y  V+   C++GD
Sbjct: 181 GYQPNTVTFNTLIHGLF-LHNKA---SEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGD 236

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
              A  L+  M    L P ++ Y ++I G C    ++DA  LFK M+  G   N+V YS+
Sbjct: 237 TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSS 296

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+  +C  G    A  LL +M +     +P+V T++++I  F  +G + EA  + D M  
Sbjct: 297 LISCLCNYGRWSDASRLLSDMIER--KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
               P+ VT S+LI GFC+   LDEA Q+ + +V+         Y++L+    + KR++E
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEE 414

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
             ++F +M   G+  + +  +++I+ L   G       +++++   G   ++ +  ++ L
Sbjct: 415 GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT--YNTL 472

Query: 420 LLGLCRKNHSVEAA 433
           L GLC KN  +E A
Sbjct: 473 LDGLC-KNGKLEKA 485



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 149/302 (49%), Gaps = 5/302 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R + +A  +L  M E  + PD   ++ +I  F ++G ++ A++L   M    + P
Sbjct: 301 LCNYGRWS-DASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDP 359

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
            I+TY S+I GFC   RL++A  +F+ M    C  ++V Y+ L+ G C+   +E  +E+ 
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVF 419

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM + G     N VTY  +IQ     G    A  I   M + G  PN +T +TL+ G C
Sbjct: 420 REMSQRG--LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC 477

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G L++A  + + +       +   Y+ ++  + +  ++++   LF  +   GVKPD +
Sbjct: 478 KNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVV 537

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           A + MI   C  G   E   L++++++ G L   +S  ++ L+    R      +A+L +
Sbjct: 538 AYNTMISGFCRKGSKEEADALFKEMKEDGTLP--NSGCYNTLIRARLRDGDREASAELIK 595

Query: 438 FM 439
            M
Sbjct: 596 EM 597



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 157/346 (45%), Gaps = 25/346 (7%)

Query: 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR 161
           EM + +  PSII    E  K    +  +    V+ +L E+             M    + 
Sbjct: 71  EMVKSRPFPSII----EFSKLLSAIAKMNKFDVVISLGEQ-------------MQNLGIP 113

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
            +   Y+ +I  FC +  +  A  ++  M  +   P+I+T  S++ G+C++ R+ +A  L
Sbjct: 114 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL 173

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M   G   N V ++ L+ G+        A+ L+  M  +G  C P++VTY  V+   
Sbjct: 174 VDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG--CQPDLVTYGVVVNGL 231

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C +G    A  +L++ME     P  +  +T+I G C   ++D+A  L  ++   G   + 
Sbjct: 232 CKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNV 291

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             YSSL+  L    R  +A +L S M+   + PD    S +I      G+++E   LY++
Sbjct: 292 VTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDE 351

Query: 402 IEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           + K     S+D  I  +S L+ G C  +   EA ++  FM+ K  +
Sbjct: 352 MVK----RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF 393



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 148/320 (46%), Gaps = 30/320 (9%)

Query: 97  YNRACEMSRI-------KQNPSIII--DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
           Y R  + SR+       K NP +     +++A+ +EG             L E  +L +E
Sbjct: 304 YGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG------------KLVEAEKLYDE 351

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
                  M +  + P  + Y+++I  FC    +  A ++ + M     +PD++TY ++IK
Sbjct: 352 -------MVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIK 404

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC   R+E+   +F+ M + G   N V Y+ L+ G+ + G  + A E+  EM  +G   
Sbjct: 405 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG--V 462

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            PN++TY +++   C  G +++A+ + + ++     P   T + +I+G C  G +++ + 
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L   +   G       Y++++    R    +EA+ LF +M   G  P+    + +IR   
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582

Query: 388 LGGQVLEGFCLYEDIEKIGF 407
             G       L +++   GF
Sbjct: 583 RDGDREASAELIKEMRSCGF 602



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           +L+DA  LF  M +     +++ +S LL  I ++   +  + L  +M+  G     N  T
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG--IPHNHYT 118

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y+ +I  FC +  +  AL +L +M  LG  PN VT+S+L+ G+C    + EA  L+D++ 
Sbjct: 119 YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 178

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G   +   +++L+  L    +  EA  L  +M+A G +PD +   V++  LC  G   
Sbjct: 179 VTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 238

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             F L   +E+      V   I++ ++ GLC+  H  +A  L + M  K I
Sbjct: 239 LAFNLLNKMEQGKLEPGV--LIYNTIIDGLCKYKHMDDALNLFKEMETKGI 287



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 133/295 (45%), Gaps = 14/295 (4%)

Query: 32  AERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYR 91
           AE+ Y  + K   +I+ ++ T  + ++  C    +H       QM   F +         
Sbjct: 345 AEKLYDEMVKR--SIDPSIVTYSSLINGFC----MHDRLDEAKQM-FEFMVSKHCFPDVV 397

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWV 151
             + +    C+  R+++     ++V     + G V +     ++     +A   + A  +
Sbjct: 398 TYNTLIKGFCKYKRVEEG----MEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
            ++M    + P+ + YN ++   C+ G +  A  + + +    + P I TY  MI+G C 
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
           AG++ED   LF  +   G   ++VAY+ ++ G CR GS E A  L  EM+++G    PN 
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG--TLPNS 571

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             Y ++I+     G  + +  ++  M + G A +  TI  L+     +G LD+++
Sbjct: 572 GCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKSF 625


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 187/410 (45%), Gaps = 33/410 (8%)

Query: 78  IRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF- 136
           +R F W   Q  Y+HS F YN   +         +  +  +  +  G         ++  
Sbjct: 22  VRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLR 81

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM----GL 192
            LC+   L ++A  +L ++ E  ++ + I Y+ VI   C+   +  A E+ K M    G 
Sbjct: 82  GLCKAGEL-DKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGC 140

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   PD++T+ S++KG C+  R+ +A  LF+ M + GC  N+++YS LLDG+C+ G ++ 
Sbjct: 141 V---PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDE 197

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST- 311
           A  L  EM ++   C P++V YTS +   C    + EA     +M   G   + V  ST 
Sbjct: 198 ACRLWEEMVEKS--CVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTV 255

Query: 312 ----------------LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
                           +I+  C  G LDEA +  +++++     S   +++L+  + ++K
Sbjct: 256 IGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSK 315

Query: 356 RLKEAEKLFSKMLASG---VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           RL +   LF +M +       P+    ++M+  LC   Q+ E   L  ++   G   S D
Sbjct: 316 RLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGL--SPD 373

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              +S L+ GLC+      A  L   M K+ ++        I+  L K+G
Sbjct: 374 VVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAG 423



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 174/368 (47%), Gaps = 35/368 (9%)

Query: 122 EEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+ CV   V     +  LC+  R+A EA    RKM     + D + ++ VI + C+KG  
Sbjct: 207 EKSCVPDLVAYTSFVTGLCKANRVA-EACDCCRKMVTKGSKADAVAFSTVIGILCKKGH- 264

Query: 181 IAADELMKGM-------GLID----LYPDIIT---------YVSMIKGFCNAGRLEDACG 220
             A+E    M       G++D     + ++I+         + ++I   C + RL D   
Sbjct: 265 --AEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVL 322

Query: 221 LF---KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           LF   K MK   C  NL  Y+ ++D +C+   ++ A EL+ EM   G   SP+VVTY+++
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYG--LSPDVVTYSAL 380

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +   C  G +  A  +L+ M   G  P+  T ++++      G +D A   ++ + A GS
Sbjct: 381 VDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGS 440

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
                 Y++L+  L +  R+ EA    +KM+A+   PD  + +++I  LC  GQ      
Sbjct: 441 TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHA 500

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457
           +++++ K G L   D+ ++  LL GL R      A +L +  L K  ++    V   V+ 
Sbjct: 501 IFQEMVKRGVLP--DTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMV---VDG 555

Query: 458 LKKSGDEE 465
           L K+G  E
Sbjct: 556 LCKAGKAE 563



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 129/268 (48%), Gaps = 6/268 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++ NLC KA+  +EA  ++ +M  + L PD + Y+ ++   C+ G +  A +L++ M   
Sbjct: 345 MVDNLC-KAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKE 403

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            ++PD  T  S++     AG+++ A    + MK  G   +LV Y+ LLDG+C+ G ++ A
Sbjct: 404 GVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEA 463

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +  L +M      C+P+V +YT +I   C  G    A  I   M   G  P+ V   +L+
Sbjct: 464 ITFLAKM--VAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLL 521

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G    G  D A +L+   +          +  +V  L +  + ++A ++  +M  +G  
Sbjct: 522 DGLARNGLEDLALELLKTSLCKPDFVM---HKMVVDGLCKAGKAEDACEVVERMADAGFP 578

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYED 401
            D      ++R L   G+V +   L +D
Sbjct: 579 ADAFTYINVVRGLRKLGKVDKARQLVDD 606


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 158/340 (46%), Gaps = 40/340 (11%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-P 197
           C  A L + A+ +L K  +F  R +   YNN++ L   +G    A  L +      LY P
Sbjct: 157 CTNAGLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSP 216

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D  ++  +IKG C  G  + A  L + M   GC+ + + ++ L+DG+CR   + R  +LL
Sbjct: 217 DGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLL 276

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             ++++G  C PNVVTYTSVI  +C  G M++AL + + M   G  PN VT + LI G+ 
Sbjct: 277 RRLQRDGV-CMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYG 335

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
              +++ A ++  +++          +SSL+    R  +L +A +++ +M    ++P+  
Sbjct: 336 KALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVY 395

Query: 378 ACSVMIRE------------------------------------LCLGGQVLEGFCLYED 401
             S++I                                      LC GGQV E   +  D
Sbjct: 396 TFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTD 455

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +E+ G     D   +++L++G C K    EA  L   M++
Sbjct: 456 MEEKG--CHPDKYTYTILIIGHCMKGRIPEAITLFHKMVE 493



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 4/243 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI   C+  R+  +A+ V   M E   RP+T+ YN +I  + +  DM +A  + +
Sbjct: 290 VTYTSVISGYCKAGRM-EDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYR 348

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            + L    PD++T+ S+I G+C  G+L+DA  ++K M +H    N+  +S ++  +C+  
Sbjct: 349 QLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQN 408

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
               AL  L E+     D +P    Y  VI I C  G ++EA  I+  ME  GC P++ T
Sbjct: 409 RSAEALGFLRELNMR-ADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYT 467

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + LI G C++G + EA  L  K+V  G        +S +  +++     E +++   ++
Sbjct: 468 YTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFISCVLKAGMPNEVDQIM--LI 525

Query: 369 ASG 371
           ASG
Sbjct: 526 ASG 528



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 130/289 (44%), Gaps = 43/289 (14%)

Query: 136 FNLCEKA--RLAN--EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG 191
           FN+  K   R+ N  +A+ ++ +M EF   PDTI +N ++   C    +    +L++ + 
Sbjct: 221 FNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQ 280

Query: 192 LIDL-YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG--------------------- 229
              +  P+++TY S+I G+C AGR+EDA  ++  M   G                     
Sbjct: 281 RDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDM 340

Query: 230 --------------CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
                         C  ++V +S+L+DG CR G ++ A+ +  EM +      PNV T++
Sbjct: 341 ESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQH--HIQPNVYTFS 398

Query: 276 SVIQIFCGKGMMKEALGILDRMEALG-CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            +I   C +    EALG L  +      AP     + +I   C  G ++EA  ++  +  
Sbjct: 399 IIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEE 458

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            G       Y+ L++      R+ EA  LF KM+ +G +PD +  +  I
Sbjct: 459 KGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFI 507



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 6/188 (3%)

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM-EALGCAPNRVTIST 311
           AL +   +        P+  +Y+ VI + C  G  ++AL + D+M +  G  P+ V  S 
Sbjct: 93  ALRIFSALHSPPLSVPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFS- 151

Query: 312 LIKGFCVE-GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
            + G C   G LD A  L+ K    G       Y++L+  L+   R ++A  LF   +  
Sbjct: 152 FVAGSCTNAGLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQD 211

Query: 371 GV-KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
           G+  PDG + +V+I+ +C  G   +   L E + + G   S D+  H++L+ GLCR    
Sbjct: 212 GLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFG--CSPDTITHNILVDGLCRAKQV 269

Query: 430 VEAAKLAR 437
                L R
Sbjct: 270 NRGHDLLR 277



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 116/250 (46%), Gaps = 7/250 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVM-KRHGCAANLVAYSALLDGICRLGSMERALE 255
           P   +Y  +I   C +GR  DA  LF  M  + G   + V +S +       G ++ A+ 
Sbjct: 109 PSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVT 168

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-APNRVTISTLIK 314
           LL +  + G    P    Y +++ +   +G  ++A+ + +     G  +P+  + + +IK
Sbjct: 169 LLTKASQFGRRIEP--YAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIK 226

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-K 373
           G C  GN  +A +L++++   G       ++ LV  L R K++     L  ++   GV  
Sbjct: 227 GVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCM 286

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +  + +I   C  G++ +   +Y D+ + G  +  ++  ++VL+ G  +      A 
Sbjct: 287 PNVVTYTSVISGYCKAGRMEDALSVYNDMLESG--TRPNTVTYNVLINGYGKALDMESAV 344

Query: 434 KLARFMLKKR 443
           ++ R ++ +R
Sbjct: 345 RMYRQLILRR 354


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 148/288 (51%), Gaps = 4/288 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V  K+ +    P+TI +  +I+  C KG +  A      +  +    + I+Y ++I 
Sbjct: 141 AFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLID 200

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G    A  L + +       N+V YS ++DG+C+   +  A +L  EM  +G   
Sbjct: 201 GLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKG--I 258

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SPNVVTY+++I  F   G +K+A+ + ++M +    P+  T + L+  FC  G +  A +
Sbjct: 259 SPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALK 318

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L+D++   G   +   YSS++  L +T R+ +A  L +K+   G++P+    +++I  LC
Sbjct: 319 LVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLC 378

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             G++ +   ++ED+   G+  +V + I  V+  G C+K    EA+ L
Sbjct: 379 TSGKLEDARNIFEDLLVKGYDITVVTYI--VMFYGFCKKGLFDEASAL 424



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 144/335 (42%), Gaps = 54/335 (16%)

Query: 148 AMWVLRKMPEFDLRPDT--------------IIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           + +V +K P F    +T              I Y++    F    D+  A  L   +   
Sbjct: 22  SHFVPKKFPSFQFLKNTHFNFIPCSSSKINLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQ 81

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +  P  I +  ++     +        L K M+  G   NLV  + L++  C+LG +  A
Sbjct: 82  NPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFA 141

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG------------ 301
             +  ++ K G +  PN +T+T++I+  C KG + +AL   D++ ALG            
Sbjct: 142 FSVFAKILKMGYN--PNTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLI 199

Query: 302 -----------------------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                                    PN V  ST+I G C + ++++A+ L  ++V+ G  
Sbjct: 200 DGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGIS 259

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   YS+L+       +LK+A  LF+KM++  +KPD    ++++   C  G++     L
Sbjct: 260 PNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKL 319

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            +++   G   ++ +  +S +L  LC K H V+ A
Sbjct: 320 VDEMHDRGQPPNIVT--YSSILDALC-KTHRVDKA 351



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 11/129 (8%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM-----IAADELMKGMGL 192
           LC+  R+ ++A+ +L K+ +  +RP+   Y  +I   C  G +     I  D L+KG  +
Sbjct: 342 LCKTHRV-DKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDI 400

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
                 ++TY+ M  GFC  G  ++A  L   M+ +GC  +   Y  +   + + G  + 
Sbjct: 401 T-----VVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGENDM 455

Query: 253 ALELLGEME 261
           A +L  E E
Sbjct: 456 AEKLHRECE 464


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 171/373 (45%), Gaps = 38/373 (10%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V +V + ++I  LC+  R  +    V R+MPE    PD   YN +I+  C +     A E
Sbjct: 127 VQNVTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALE 186

Query: 186 LMKGM---GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           L+  M   G  +  P++++Y ++I GF   G ++ A  LF  M   G   ++V YS+L+D
Sbjct: 187 LLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLID 246

Query: 243 GICRLGSMERALELLGEMEKEG-------------GDCS--------------------P 269
           G+C+  +M +A  +L  M  +G             G CS                    P
Sbjct: 247 GLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQP 306

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +VVTY  +IQ +C  G   EA  + D M   G  PN      L+ G+  +G L +   L+
Sbjct: 307 DVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLL 366

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           D ++  G       ++ L+    +   + +A   F++M  +G++PD ++ S +I  LC  
Sbjct: 367 DLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKI 426

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449
           G+V +    +  +   G   ++ S   + L+ GLC      +  +LA  M+ + I     
Sbjct: 427 GRVEDAVYHFNQMVSEGLSPNIIS--FTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAI 484

Query: 450 YVDKIVEHLKKSG 462
           +++ I+++L K G
Sbjct: 485 FMNTIMDNLCKEG 497



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 167/351 (47%), Gaps = 40/351 (11%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    +I  LC KA+  N+A  +L+ M +  + P+T  YN +IR +C  G +  A  L+K
Sbjct: 239 VTYSSLIDGLC-KAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLK 297

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG----- 243
            M    L PD++TY+ +I+ +C  GR  +A  +F  M R G   N   Y  LL G     
Sbjct: 298 KMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKG 357

Query: 244 ---------------------------IC---RLGSMERALELLGEMEKEGGDCSPNVVT 273
                                      IC   + G++++A+    EM + G    P+VV+
Sbjct: 358 ALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNG--LRPDVVS 415

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y++VI I C  G +++A+   ++M + G +PN ++ ++LI G C  G   +  +L  +++
Sbjct: 416 YSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMI 475

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G        ++++  L +  R+ EA+  F  ++  GVKP+ ++ + +I   C  G++ 
Sbjct: 476 NRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMD 535

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           E    ++ +  IG     DS  ++ LL G  +     +A  L R M +K +
Sbjct: 536 ESIKQFDRMVSIGLRP--DSWTYNALLNGYFKNGRVEDALALYREMFRKDV 584



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 140/277 (50%), Gaps = 4/277 (1%)

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL-FKVMKRH 228
           +IR FC  G +  A         +      +T   +IKG C+  R +DA  + F+ M   
Sbjct: 100 LIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMDMVFRRMPEL 159

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG-DCSPNVVTYTSVIQIFCGKGMM 287
           G   ++ +Y+AL+ G+C     + ALELL  M  +GG +CSPNVV+Y+++I  F  +G +
Sbjct: 160 GYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEV 219

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            +A  + D M   G  P+ VT S+LI G C    +++A  ++  +   G + +   Y+ +
Sbjct: 220 DKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIM 279

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +       +L+EA +L  KM  SG++PD +   ++I+  C  G+  E   +++ + + G 
Sbjct: 280 IRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKG- 338

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
               +S I+ +LL G   K   ++   L   M++  I
Sbjct: 339 -QKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGI 374



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 165/359 (45%), Gaps = 40/359 (11%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-------- 190
           C+  R A EA  V   M     +P++ IY+ ++  +  KG +I   +L+  M        
Sbjct: 319 CKIGRCA-EARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFE 377

Query: 191 --------------GLID-------------LYPDIITYVSMIKGFCNAGRLEDACGLFK 223
                         G +D             L PD+++Y ++I   C  GR+EDA   F 
Sbjct: 378 HRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFN 437

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M   G + N++++++L+ G+C +G  ++  EL  EM   G    P+ +   +++   C 
Sbjct: 438 QMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRG--IHPDAIFMNTIMDNLCK 495

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
           +G + EA    D +  +G  PN V+ +TLI G+C  G +DE+ +  D++V+ G       
Sbjct: 496 EGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWT 555

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y++L+    +  R+++A  L+ +M    VK   +  ++++  L   G+++    LY  + 
Sbjct: 556 YNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMV 615

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
             G  + +  + ++ +L GLC  +   EA ++   +  K   L     + ++  L K G
Sbjct: 616 DRG--TQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVG 672



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 141/293 (48%), Gaps = 16/293 (5%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A ++  +M      PD + Y+++I   C+   M  A+ +++ M    + P+  TY  M
Sbjct: 220 DKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIM 279

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I+G+C+ G+LE+A  L K M   G   ++V Y  L+   C++G    A  +   M ++G 
Sbjct: 280 IRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQ 339

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PN   Y  ++  +  KG + +   +LD M   G        + LI  +   G +D+A
Sbjct: 340 --KPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKA 397

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
                ++   G       YS+++  L +  R+++A   F++M++ G+ P+ ++ + +I  
Sbjct: 398 MTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHG 457

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH------SVLLLGLCRKNHSVEA 432
           LC  G+       ++ +E++ F   ++  IH      + ++  LC++   VEA
Sbjct: 458 LCSIGE-------WKKVEELAF-EMINRGIHPDAIFMNTIMDNLCKEGRVVEA 502



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 138/304 (45%), Gaps = 5/304 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           ++ M  ++ NLC++ R+  EA      +    ++P+ + YN +I  +C  G M  + +  
Sbjct: 483 AIFMNTIMDNLCKEGRVV-EAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQF 541

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M  I L PD  TY +++ G+   GR+EDA  L++ M R       +  + +L G+ + 
Sbjct: 542 DRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQA 601

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
           G +  A EL  +M   G      + TY +V+   C    + EAL + + + +     +  
Sbjct: 602 GRIVAARELYMKMVDRGTQL--RIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVW 659

Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           T + +I      G +DEA  L   +V  G V     YS ++   +    L+E++ LF  M
Sbjct: 660 TFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSM 719

Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
             +G   D    +V+IR L   G V         I++  F  SV++   ++L+  +  K 
Sbjct: 720 EKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKIDEKNF--SVEASTAALLIPIVSEKK 777

Query: 428 HSVE 431
           +  E
Sbjct: 778 YQKE 781



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 146/333 (43%), Gaps = 40/333 (12%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC+  R+  +A++   +M    L P+ I + ++I   C  G+    +EL  
Sbjct: 414 VSYSTVIHILCKIGRV-EDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAF 472

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    ++PD I   +++   C  GR+ +A   F ++   G   N+V+Y+ L+DG C +G
Sbjct: 473 EMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVG 532

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            M+ +++    M   G    P+  TY +++  +   G +++AL +   M         +T
Sbjct: 533 KMDESIKQFDRMVSIG--LRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAIT 590

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGG---------SVSSGGCYSSLVVE--------- 350
            + ++ G    G +  A +L  K+V  G         +V  G C +S V E         
Sbjct: 591 SNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLR 650

Query: 351 -----------------LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
                            L++  R+ EA+ LFS M+  G  P  +  S+MI+     G + 
Sbjct: 651 SKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLE 710

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           E   L+  +EK G   + DS + +V++  L  K
Sbjct: 711 ESDDLFLSMEKNG--CAADSHMLNVIIRRLLEK 741


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 187/410 (45%), Gaps = 33/410 (8%)

Query: 78  IRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF- 136
           +R F W   Q  Y+HS F YN   +         +  +  +  +  G         ++  
Sbjct: 22  VRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLR 81

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM----GL 192
            LC+   L ++A  +L ++ E  ++ + I Y+ VI   C+   +  A E+ K M    G 
Sbjct: 82  GLCKAGEL-DKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGC 140

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           +   PD++T+ S++KG C+  R+ +A  LF+ M + GC  N+++YS LLDG+C+ G ++ 
Sbjct: 141 V---PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDE 197

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST- 311
           A  L  EM ++   C P++V YTS +   C    + EA     +M   G   + V  ST 
Sbjct: 198 ACRLWEEMVEKS--CVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTV 255

Query: 312 ----------------LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
                           +I+  C  G LDEA +  +++++     S   +++L+  + ++K
Sbjct: 256 IGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSK 315

Query: 356 RLKEAEKLFSKMLASG---VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           RL +   LF +M +       P+    ++M+  LC   Q+ E   L  ++   G   S D
Sbjct: 316 RLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGL--SPD 373

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
              +S L+ GLC+      A  L   M K+ ++        I+  L K+G
Sbjct: 374 VVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAG 423



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 158/328 (48%), Gaps = 32/328 (9%)

Query: 122 EEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+ CV   V     +  LC+  R+A EA    RKM     + D + ++ VI + C+KG  
Sbjct: 207 EKSCVPDLVAYTSFVTGLCKANRVA-EACDCCRKMVTKGSKADAVAFSTVIGILCKKGH- 264

Query: 181 IAADELMKGM-------GLID----LYPDIIT---------YVSMIKGFCNAGRLEDACG 220
             A+E    M       G++D     + ++I+         + ++I   C + RL D   
Sbjct: 265 --AEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVL 322

Query: 221 LF---KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           LF   K MK   C  NL  Y+ ++D +C+   ++ A EL+ EM   G   SP+VVTY+++
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYG--LSPDVVTYSAL 380

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +   C  G +  A  +L+ M   G  P+  T ++++      G +D A   ++ + A GS
Sbjct: 381 VDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGS 440

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
                 Y++L+  L +  R+ EA    +KM+A+   PD  + +++I  LC  GQ      
Sbjct: 441 TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHA 500

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           +++++ K G L   D+ ++  LL GL R
Sbjct: 501 IFQEMVKRGVLP--DTVLYHSLLDGLAR 526



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 3/196 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++ NLC KA+  +EA  ++ +M  + L PD + Y+ ++   C+ G +  A +L++ M   
Sbjct: 345 MVDNLC-KAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKE 403

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            ++PD  T  S++     AG+++ A    + MK  G   +LV Y+ LLDG+C+ G ++ A
Sbjct: 404 GVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEA 463

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +  L +M      C+P+V +YT +I   C  G    A  I   M   G  P+ V   +L+
Sbjct: 464 ITFLAKM--VAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLL 521

Query: 314 KGFCVEGNLDEAYQLI 329
            G    G  D A +L+
Sbjct: 522 DGLARNGLEDLALELL 537



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 5/216 (2%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           D++E   +EG          I N   KA   + A+  L  M      PD + YN ++   
Sbjct: 395 DLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGL 454

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+ G +  A   +  M      PD+ +Y  +I   C +G+   A  +F+ M + G   + 
Sbjct: 455 CKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDT 514

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V Y +LLDG+ R G  + ALELL     +   C P+ V +  V+   C  G  ++A  ++
Sbjct: 515 VLYHSLLDGLARNGLEDLALELL-----KTSLCKPDFVMHKMVLDGLCKAGKAEDACEVV 569

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           +RM   G   +  T  +++ G    G +D+A QL+D
Sbjct: 570 ERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVD 605



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 9/160 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+  RI +  + +  +V A     C   V    +I   LC   + A  A  + ++M +  
Sbjct: 455 CKAGRIDEAITFLAKMVAA----KCTPDVFSYTIIITALCRSGQAAG-AHAIFQEMVKRG 509

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           + PDT++Y++++      G    A EL+K   L    PD + +  ++ G C AG+ EDAC
Sbjct: 510 VLPDTVLYHSLLDGLARNGLEDLALELLK-TSLCK--PDFVMHKMVLDGLCKAGKAEDAC 566

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            + + M   G  A+   Y +++ G+ +LG +++A +L+ +
Sbjct: 567 EVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDD 606


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 154/311 (49%), Gaps = 5/311 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI+  C + +   +A+  L  M +++  PD + YN ++   C+KG +  A +L+  M   
Sbjct: 214 VIYGYCLENKFK-DAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSR 272

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+  TY  ++ G+C  G L++A  + ++M ++    ++  Y+ L++G+C  G +E A
Sbjct: 273 GLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEA 332

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  EM  E     P+VV+Y ++I        + EA  +L+ M   G  PN VT + ++
Sbjct: 333 FKLRDEM--ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMV 390

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           K +C EG +D+A   I K+   G       Y++L+    +   + EA +   +M    +K
Sbjct: 391 KWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMK 450

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            D +  + ++R LC   ++ E + L     K G+   +D   +  L++G  +  +   A 
Sbjct: 451 MDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYF--IDEVSYGTLIVGYFKDGNVDRAL 508

Query: 434 KLARFMLKKRI 444
           KL   M +K I
Sbjct: 509 KLWDEMKEKEI 519



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 168/334 (50%), Gaps = 12/334 (3%)

Query: 116 VVEAYK--EEGCVVSVKMMKVIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           + EA+K  EE     VK   V  N+     C++ ++ ++A   + KM E    PD + YN
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKM-DDASNTITKMEESGFSPDCVTYN 422

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I  +C+ G+M  A   M  MG  ++  D +T  ++++  C   +LE+A  L    ++ 
Sbjct: 423 TLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKR 482

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   + V+Y  L+ G  + G+++RAL+L  EM+++  +  P+ VTY  +I   C  G  +
Sbjct: 483 GYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEK--EIIPSTVTYNCIIGGLCQCGKTE 540

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A+  L+ +   G  P+  T +T++ G+C EG++++A+Q  +K+V           + L+
Sbjct: 541 QAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILL 600

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L     L++A KLF+  ++ G   D +  + +I  LC  G++ + F L  ++E+    
Sbjct: 601 RGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKEL- 659

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              D   ++ ++  L       EA +    ML+K
Sbjct: 660 -GPDHYTYNAIITALTDSGRIREAEEFMSKMLEK 692



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 142/293 (48%), Gaps = 9/293 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+   +N VI  +C +     A E +  MG  +  PD +TY +++   C  GRL DA  L
Sbjct: 206 PNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDL 265

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              MK  G   N   Y+ L+ G C++G ++ A  ++  M +   +  P+V TY  +I   
Sbjct: 266 LMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQ--NNLLPDVWTYNMLINGL 323

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C +G ++EA  + D ME L   P+ V+ +TLI G      + EA++L++++   G   + 
Sbjct: 324 CNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNA 383

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             ++ +V    +  ++ +A    +KM  SG  PD +  + +I   C  G + E F   ++
Sbjct: 384 VTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDE 443

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           + +      +DS   + +L  LCR+    EA KL     K+     G ++D++
Sbjct: 444 MGRKNM--KMDSVTLNTILRTLCREKKLEEAYKLLSSARKR-----GYFIDEV 489



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 181/398 (45%), Gaps = 45/398 (11%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+M  +K+      +V+E   +   +  V    ++ N LC + R+  EA  +  +M    
Sbjct: 289 CKMGWLKE----AANVIELMTQNNLLPDVWTYNMLINGLCNEGRIE-EAFKLRDEMENLK 343

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L PD + YN +I    E   +  A +L++ M    + P+ +T+  M+K +C  G+++DA 
Sbjct: 344 LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDAS 403

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
                M+  G + + V Y+ L++G C+ G+M  A   + EM ++  +   + VT  ++++
Sbjct: 404 NTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRK--NMKMDSVTLNTILR 461

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV------- 332
             C +  ++EA  +L      G   + V+  TLI G+  +GN+D A +L D++       
Sbjct: 462 TLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIP 521

Query: 333 -------VAGGSVSSG---------------------GCYSSLVVELVRTKRLKEAEKLF 364
                  + GG    G                       Y++++    R   +++A +  
Sbjct: 522 STVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFH 581

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           +KM+ +  KPD   C++++R LC+ G + +   L+      G   ++D+  ++ L+  LC
Sbjct: 582 NKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKG--KAIDTVTYNTLITSLC 639

Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           ++    +A  L   M +K +       + I+  L  SG
Sbjct: 640 KEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSG 677



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 15/242 (6%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +   +A+  L ++ E  L PD   YN ++  +C +GD+  A +    M   
Sbjct: 529 IIGGLCQCGK-TEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVEN 587

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ T   +++G C  G LE A  LF      G A + V Y+ L+  +C+ G ++ A
Sbjct: 588 SFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDA 647

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL EME++  +  P+  TY ++I      G ++EA   + +M   G  P++V      
Sbjct: 648 FNLLSEMEEK--ELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVL----- 700

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
                   LD+   ++    +  S SS   YS  + EL    + K+A ++F +    G+ 
Sbjct: 701 -------QLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGIT 753

Query: 374 PD 375
            D
Sbjct: 754 VD 755



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 7/244 (2%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER---ALELLGEM 260
           + I  +  +G+   A  +FK MKR     NL+  + LL+ + R  S      + E   + 
Sbjct: 140 TAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDA 199

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            K G    PNV T+  VI  +C +   K+A+  L+ M    C+P+ VT +T++   C +G
Sbjct: 200 IKLG--IVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKG 257

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            L +A  L+  + + G + +   Y+ LV    +   LKEA  +   M  + + PD    +
Sbjct: 258 RLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYN 317

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           ++I  LC  G++ E F L +++E +  L  V S  ++ L+ G    +   EA KL   M 
Sbjct: 318 MLINGLCNEGRIEEAFKLRDEMENLKLLPDVVS--YNTLINGCLEWSKISEAFKLLEEMS 375

Query: 441 KKRI 444
           +K +
Sbjct: 376 EKGV 379



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 24/144 (16%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           + +V    +I +LC++ RL ++A  +L +M E +L PD   YN +I    + G +  A+E
Sbjct: 626 IDTVTYNTLITSLCKEGRL-DDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEE 684

Query: 186 LMKGMGLIDLYPD-----------------------IITYVSMIKGFCNAGRLEDACGLF 222
            M  M      PD                        + Y   IK  C  G+ +DA  +F
Sbjct: 685 FMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIF 744

Query: 223 KVMKRHGCAANLVAYSALLDGICR 246
              K+ G   +   Y  L+DG+ +
Sbjct: 745 GESKQKGITVDKSTYINLMDGLIK 768


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 162/322 (50%), Gaps = 10/322 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI   C + ++  EA+ V   M +  L PDT  Y+ ++   C++GD++   +L+  M   
Sbjct: 287 VIQGFCREGQV-QEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARN 345

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P +++Y S++ G C AG++E A  LF+ ++  G   + + YS +L+G C+  ++E  
Sbjct: 346 GIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVV 405

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  +M     +  P+   YTS+I  FC    + +ALG+ + M   G +PN VT + L+
Sbjct: 406 CDLWNDMVHH--NFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILV 463

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GF  E  +DEA+  + KV   G V +   Y  ++  L +  +      +F+ M+  G  
Sbjct: 464 DGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYV 523

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  S++I       ++ E F L+  +   G   +V +  ++ L+ GLC  +   E  
Sbjct: 524 PDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFT--YTSLINGLCHDDRLPEVV 581

Query: 434 KLARFMLKKRIWLQGPYVDKIV 455
            L + M    IW +G   D+I+
Sbjct: 582 TLFKHM----IW-EGLTPDRIL 598



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 134/297 (45%), Gaps = 5/297 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    ++  LC   ++   A  + R++ E   + D I+Y+ ++   C+  ++    +L  
Sbjct: 352 VSYSSLLHGLCRAGKV-ELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWN 410

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M   +  PD   Y S+I  FC    L DA G+F++M   G + N+V  + L+DG  +  
Sbjct: 411 DMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKER 470

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ A   L ++ + G    PN+  Y  +I   C         GI   M   G  P+ V 
Sbjct: 471 MIDEAFLFLHKVRQFG--IVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVV 528

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S +I  F     L EA++L  K++  G+  +   Y+SL+  L    RL E   LF  M+
Sbjct: 529 YSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMI 588

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
             G+ PD +  + +I   C    +     ++  + K+G   S D+ +++ L+ G  +
Sbjct: 589 WEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGL--SADAFLYTCLIGGFSK 643



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 141/297 (47%), Gaps = 18/297 (6%)

Query: 89  SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
           +Y ++S +Y   C      +N +  + V E   + G   +V    ++ +   K R+ +EA
Sbjct: 421 AYNYTSLIY-AFCR----HRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEA 475

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCE--KGDM---IAADELMKGMGLIDLYPDIITYV 203
              L K+ +F + P+  +Y  +I   C+  K D    I AD + +G       PD + Y 
Sbjct: 476 FLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGY-----VPDTVVYS 530

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            +I  F  A +L +A  LF  M   G   N+  Y++L++G+C    +   + L   M  E
Sbjct: 531 IIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWE 590

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G   +P+ + YTS+I  +C +  MK AL I   M  LG + +    + LI GF     +D
Sbjct: 591 G--LTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGGFSKVLAMD 648

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LAC 379
            A  L++++   G   S   Y++L++   +    ++A   ++ ML +G+ PD  L+C
Sbjct: 649 GAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGDERKANMTYNSMLQAGITPDAKLSC 705



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 98/208 (47%), Gaps = 8/208 (3%)

Query: 221 LFKVMKRHGCAANLVAYSALLDGIC---RLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           LF  MK  G + N+ +YS L+       RL  +  A ELL EME +G    PN  TY + 
Sbjct: 196 LFDDMKSSGPSPNVYSYSVLMSAYTHGDRL-YLAEAFELLSEMEMKG--VKPNAATYGTY 252

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +        +  A   L  +   G   N    + +I+GFC EG + EA ++ D +  GG 
Sbjct: 253 LYGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGL 312

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
           V     YS LV  L +   +     L  +M  +G+ P  ++ S ++  LC  G+V   F 
Sbjct: 313 VPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFE 372

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           L+  +E+ GF    D  ++S++L G C+
Sbjct: 373 LFRRLEEQGF--KHDHIVYSIILNGCCQ 398


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 130/255 (50%), Gaps = 2/255 (0%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           +E+G    V    ++     + +   EA+ ++ K+ +  L P+ + YN +I  FC+ G M
Sbjct: 290 REKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKM 349

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L   +    L P ++TY ++I G+     L  A  L K M+    A + V Y+ L
Sbjct: 350 DTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTIL 409

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +D   RL   E+A E+   MEK G    P+V TY+ +I   C  G MKEA  +   +  +
Sbjct: 410 IDAFARLNYTEKACEMHSLMEKSG--LVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEM 467

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
              PN V  +T+I G+C EG+   A +L++++V  G V +   + S +  L R ++ KEA
Sbjct: 468 HLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEA 527

Query: 361 EKLFSKMLASGVKPD 375
           E L  +M+ SG+KP 
Sbjct: 528 ELLLGQMINSGLKPS 542



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 151/323 (46%), Gaps = 35/323 (10%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L  + EF L P+ +IY  +I   C+ G+++ A  L   M  + L P+  TY  ++ GF 
Sbjct: 180 LLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFF 239

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC--- 267
             G   +   +++ MKR G   N  AY+ L+   C  G +++A ++  EM ++G  C   
Sbjct: 240 KQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVM 299

Query: 268 ------------------------------SPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
                                         SPN+VTY  +I  FC  G M  A+ + +++
Sbjct: 300 TYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQL 359

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           ++ G +P  VT +TLI G+    NL  A  L+ ++       S   Y+ L+    R    
Sbjct: 360 KSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYT 419

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
           ++A ++ S M  SG+ PD    SV+I  LC+ G + E   L++ + ++      +S I++
Sbjct: 420 EKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHL--QPNSVIYN 477

Query: 418 VLLLGLCRKNHSVEAAKLARFML 440
            ++ G C++  S  A +L   M+
Sbjct: 478 TMIHGYCKEGSSYRALRLLNEMV 500



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 139/312 (44%), Gaps = 4/312 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G V +     V+ N   K  L  E   +   M    + P+   YN +I  +C  G +  A
Sbjct: 223 GLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKA 282

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            ++   M    +   ++TY  +I G C   +  +A  L   + + G + N+V Y+ L++G
Sbjct: 283 FKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILING 342

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C +G M+ A+ L  +++  G   SP +VTY ++I  +     +  AL ++  ME    A
Sbjct: 343 FCDVGKMDTAVRLFNQLKSSG--LSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIA 400

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P++VT + LI  F      ++A ++   +   G V     YS L+  L     +KEA KL
Sbjct: 401 PSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKL 460

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F  +    ++P+ +  + MI   C  G       L  ++   G + +V S   ++ L  L
Sbjct: 461 FKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGL--L 518

Query: 424 CRKNHSVEAAKL 435
           CR     EA  L
Sbjct: 519 CRDEKWKEAELL 530



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 4/189 (2%)

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           ++  ++ G C  G   +   LL  +E+ G   SPNVV YT++I   C  G +  A  +  
Sbjct: 160 SFGIMIKGCCEAGYFVKGFRLLAMLEEFG--LSPNVVIYTTLIDGCCKYGNVMLAKNLFC 217

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +M+ LG  PN  T S L+ GF  +G   E +Q+ + +   G V +   Y+ L+ E     
Sbjct: 218 KMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGG 277

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            + +A K+F++M   G+    +  +++I  LC G +  E   L   + K+G   ++ +  
Sbjct: 278 MVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVT-- 335

Query: 416 HSVLLLGLC 424
           +++L+ G C
Sbjct: 336 YNILINGFC 344



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 3/160 (1%)

Query: 122 EEGCVVSVKMM-KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           EE C+   K+   ++ +   +     +A  +   M +  L PD   Y+ +I   C  G+M
Sbjct: 395 EERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNM 454

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A +L K +G + L P+ + Y +MI G+C  G    A  L   M   G   N+ ++ + 
Sbjct: 455 KEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCST 514

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +  +CR    + A  LLG+M   G    P+V  Y  V ++
Sbjct: 515 IGLLCRDEKWKEAELLLGQMINSG--LKPSVSLYKMVHKV 552



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 3/125 (2%)

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           T++  +    + D+A   +  ++  G V     +++L+  L+R+    +A  +F++ L S
Sbjct: 94  TIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNE-LKS 152

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
            V  D  +  +MI+  C  G  ++GF L   +E+ G   S +  I++ L+ G C+  + +
Sbjct: 153 KVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGL--SPNVVIYTTLIDGCCKYGNVM 210

Query: 431 EAAKL 435
            A  L
Sbjct: 211 LAKNL 215


>gi|224088774|ref|XP_002308534.1| predicted protein [Populus trichocarpa]
 gi|222854510|gb|EEE92057.1| predicted protein [Populus trichocarpa]
          Length = 567

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 176/384 (45%), Gaps = 27/384 (7%)

Query: 42  NPNNIEKT-LATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRA 100
           NP +I  T L      LDS  VIEV+    P+  Q  + FF WA+   +   +++ +N  
Sbjct: 42  NPKHINPTHLNQFSPHLDSNLVIEVIKEQQPNPYQ-ALFFFNWAS-NLNPNPNNYSHNHR 99

Query: 101 CEMSRIKQ--NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158
           C ++ I    + S+        ++ G    + + K+I          +   W   K+ E 
Sbjct: 100 CYVAIIDLLLSHSLFPIAKNLLEKHGTFSDLLVSKLIRAYGYSGDTKSAIFW-FHKVKEI 158

Query: 159 DLRPDTIIYNNVIRLFCEKG---------DMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
                   +N ++ +  +           D I  D ++K        PD  TY +MI+GF
Sbjct: 159 QQGKCLFSWNAILGVLVKVNQINVAKSFFDQIVNDAVVK--------PDASTYTTMIRGF 210

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
           C  G +++A  +F  M    C  NL+  + L++G C+ G ME A   L  M  E  DC P
Sbjct: 211 CKVGMIDNARKVFDEMI---CEPNLITCNTLINGYCKKGDMENARIFLCRM-MESKDCLP 266

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           + VTY+++I  +C KG + EA   +D M   GC PN  T + +I G C+ GN+DEA +L+
Sbjct: 267 DTVTYSTLIDGYCKKGELNEARKWMDGMLIRGCNPNLWTYNAIIYGLCLRGNVDEARRLL 326

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            K+   G   +   + S++  L    + +EA   FS+M+  G+K D     V+I   C  
Sbjct: 327 TKMRLNGVKENVATHLSILKGLSVAGKSEEAIGYFSEMIRKGMKLDAKEHEVVITAYCKM 386

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDS 413
            +  E   L ++++  G   SV S
Sbjct: 387 RKPDEAISLLKEMQAKGISRSVGS 410



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 125/303 (41%), Gaps = 69/303 (22%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+K  + N  +++ R M   D  PDT+ Y+ +I  +C+KG++  A + M GM + 
Sbjct: 238 LINGYCKKGDMENARIFLCRMMESKDCLPDTVTYSTLIDGYCKKGELNEARKWMDGMLIR 297

Query: 194 DLYPDIITY-----------------------------------VSMIKGFCNAGRLEDA 218
              P++ TY                                   +S++KG   AG+ E+A
Sbjct: 298 GCNPNLWTYNAIIYGLCLRGNVDEARRLLTKMRLNGVKENVATHLSILKGLSVAGKSEEA 357

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-------------- 264
            G F  M R G   +   +  ++   C++   + A+ LL EM+ +G              
Sbjct: 358 IGYFSEMIRKGMKLDAKEHEVVITAYCKMRKPDEAISLLKEMQAKGISRSVGSFNAVLRI 417

Query: 265 ----GD---------------CSPNVVTYTSVIQIFC-GKGMMKEALGILDRMEALGCAP 304
               G+               C PN+V+Y++VI   C   G M+E  G++D M   G   
Sbjct: 418 LVEIGELDKAVLLLKQVKNMGCLPNLVSYSTVICGLCRSHGRMQEVAGLVDDMLQDGFEM 477

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           +    S L+ GFC  GN + A +     +    V +   +S  V  +    ++ EAE++F
Sbjct: 478 DATLYSCLVGGFCEAGNEEMAMRAFYDSINKNYVINLQSFSFFVNLMCGKGKVIEAEQIF 537

Query: 365 SKM 367
             M
Sbjct: 538 KDM 540



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           +G  +  K  +V+     K R  +EA+ +L++M    +      +N V+R+  E G++  
Sbjct: 367 KGMKLDAKEHEVVITAYCKMRKPDEAISLLKEMQAKGISRSVGSFNAVLRILVEIGELDK 426

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNA-GRLEDACGLFKVMKRHGCAANLVAYSALL 241
           A  L+K +  +   P++++Y ++I G C + GR+++  GL   M + G   +   YS L+
Sbjct: 427 AVLLLKQVKNMGCLPNLVSYSTVICGLCRSHGRMQEVAGLVDDMLQDGFEMDATLYSCLV 486

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
            G C  G+ E A+      +    +   N+ +++  + + CGKG + EA  I   M
Sbjct: 487 GGFCEAGNEEMAMRAF--YDSINKNYVINLQSFSFFVNLMCGKGKVIEAEQIFKDM 540


>gi|302791145|ref|XP_002977339.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
 gi|300154709|gb|EFJ21343.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
          Length = 336

 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 162/327 (49%), Gaps = 14/327 (4%)

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           L +E   +L KMP ++L      +N ++     +G++  A  +   M   +L P+++TY 
Sbjct: 17  LLDETTKILDKMPAWNL----ATWNTLLTSHSLQGNLTGAIRVFHEMPDKNL-PNMVTYN 71

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           S+I G C    ++    L + M   GC  ++  Y+ L+DG+C+ G +  A  L GEM+ +
Sbjct: 72  SLIHGLCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEANRLFGEMKAK 131

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
              C+P+V+TY+ +I  FC    +  A  + D M      P+ VT  TL++G+C  G +D
Sbjct: 132 F--CNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVD 189

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG----VKPDGLAC 379
           +A +L++++VA         Y+SLV +  + KR+ EA ++  +M   G     K D  A 
Sbjct: 190 DAERLLEEMVASDCSPDVYTYTSLVDDFCKVKRMVEAHRVLKRMAKGGSNKNCKADMFAY 249

Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK-LARF 438
            +M+  LC  G++     L E I++ G  +    DI+  L+ GLC+     +A + L   
Sbjct: 250 RMMMDGLCRTGRMSAALELLEAIKQSG--TPPRHDIYVALIRGLCQGKELRKAMEVLEEM 307

Query: 439 MLKKRIWLQGPYVDKIVEHLKKSGDEE 465
            L ++          +++ L + G  E
Sbjct: 308 TLSRKGRPNAKAYKAVIQELAREGRHE 334



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 123/249 (49%), Gaps = 5/249 (2%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++E     GC+  +     + + LC+  R+  EA  +  +M      PD I Y+ +I  F
Sbjct: 89  LMEEMTATGCLPDINTYNTLIDGLCKTGRVP-EANRLFGEMKAKFCNPDVITYSCLIGGF 147

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C+   +  A  L   M      PD++T+ ++++G+CNAG ++DA  L + M    C+ ++
Sbjct: 148 CKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEMVASDCSPDV 207

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGG--DCSPNVVTYTSVIQIFCGKGMMKEALG 292
             Y++L+D  C++  M  A  +L  M K G   +C  ++  Y  ++   C  G M  AL 
Sbjct: 208 YTYTSLVDDFCKVKRMVEAHRVLKRMAKGGSNKNCKADMFAYRMMMDGLCRTGRMSAALE 267

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV-VAGGSVSSGGCYSSLVVEL 351
           +L+ ++  G  P       LI+G C    L +A ++++++ ++     +   Y +++ EL
Sbjct: 268 LLEAIKQSGTPPRHDIYVALIRGLCQGKELRKAMEVLEEMTLSRKGRPNAKAYKAVIQEL 327

Query: 352 VRTKRLKEA 360
            R  R ++A
Sbjct: 328 AREGRHEKA 336


>gi|296090648|emb|CBI41047.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 153/293 (52%), Gaps = 6/293 (2%)

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
           ++  ++   C+ G +  A  L + M  I   P +  + S++ G+C  G+L +A  +   +
Sbjct: 87  VFGCLLDALCKNGSVKEAASLFEDMR-IRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQI 145

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
           +  G   ++V Y+ LL G    G M  A +LL EM ++  +C PNV+++T++IQ  C K 
Sbjct: 146 REAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRK--ECEPNVMSFTTLIQALCAKK 203

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            M+EA+ +   M++ GC  + VT +TLI GFC  G + + Y+L+D ++  G + +   Y 
Sbjct: 204 KMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYL 263

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
            ++    + + L+E  +L  +M   G  PD    +++IR  C  G++ EG  ++ ++E  
Sbjct: 264 HIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEAT 323

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
           G    +D+ +  +++ G   +   VEA +  + M+ + + L  P    + E L
Sbjct: 324 GLSPGLDTFV--IMIHGFLSQRCLVEACEFFKEMVGRGL-LSAPQYGTLKELL 373



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 154/317 (48%), Gaps = 40/317 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +++  C + +L  EA +VL ++ E    PD ++YNN++  +   G M+ A +L+K M   
Sbjct: 125 LLYGWCREGKLM-EAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRK 183

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           +  P+++++ ++I+  C   ++E+A  +F  M+  GC A+ V Y+ L+ G C+ G + + 
Sbjct: 184 ECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKG 243

Query: 254 LELLGEMEKEGG---------------------------------DCSPNVVTYTSVIQI 280
            ELL  M ++G                                   C+P++  Y  VI++
Sbjct: 244 YELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRL 303

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +KE + + + MEA G +P   T   +I GF  +  L EA +   ++V  G +S+
Sbjct: 304 ACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSA 363

Query: 341 G--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG--F 396
              G    L+  L+R ++L+ ++ ++S ++  G   +  A ++ I  L   G V E   +
Sbjct: 364 PQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSY 423

Query: 397 CLYEDIEKIGFLSSVDS 413
           CL  D+   G +   D+
Sbjct: 424 CL--DMMDAGVMPQPDT 438



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 129/264 (48%), Gaps = 2/264 (0%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P    + +++  +C +G ++ A  ++  +      PDI+ Y +++ G+  AG++ DA  L
Sbjct: 117 PTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDL 176

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            K M+R  C  N+++++ L+  +C    ME A+ +  EM+  G  C  + VTYT++I  F
Sbjct: 177 LKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCG--CPADAVTYTTLISGF 234

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G + +   +LD M   G  PN +T   ++     +  L+E  +L++++   G     
Sbjct: 235 CKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDL 294

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y+ ++    +   +KE  +++++M A+G+ P      +MI        ++E    +++
Sbjct: 295 NIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKE 354

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCR 425
           +   G LS+        LL  L R
Sbjct: 355 MVGRGLLSAPQYGTLKELLNSLLR 378



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 119/275 (43%), Gaps = 6/275 (2%)

Query: 115 DVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           D+++  + + C  +V     +I  LC K ++  EAM V  +M       D + Y  +I  
Sbjct: 175 DLLKEMRRKECEPNVMSFTTLIQALCAKKKM-EEAMRVFFEMQSCGCPADAVTYTTLISG 233

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+ G +    EL+  M      P+ +TY+ ++        LE+   L + M++ GC  +
Sbjct: 234 FCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPD 293

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           L  Y+ ++   C+LG ++  + +  EME  G   SP + T+  +I  F  +  + EA   
Sbjct: 294 LNIYNIVIRLACKLGEIKEGVRVWNEMEATG--LSPGLDTFVIMIHGFLSQRCLVEACEF 351

Query: 294 LDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
              M   G   AP   T+  L+        L+ +  +   ++  G   +   ++  +  L
Sbjct: 352 FKEMVGRGLLSAPQYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHAL 411

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
                +KEA      M+ +GV P     + ++R L
Sbjct: 412 FSNGHVKEACSYCLDMMDAGVMPQPDTFAKLMRGL 446



 Score = 38.9 bits (89), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 77/207 (37%), Gaps = 37/207 (17%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+ + Y +++    +K ++    ELM+ M  I   PD+  Y  +I+  C  G +++   +
Sbjct: 257 PNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRV 316

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG----------------- 264
           +  M+  G +  L  +  ++ G      +  A E   EM   G                 
Sbjct: 317 WNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSL 376

Query: 265 ------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGI-LDRMEALGCAPN 305
                               C  NV  +T  I      G +KEA    LD M+A G  P 
Sbjct: 377 LRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDA-GVMPQ 435

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKV 332
             T + L++G     N   A ++ +KV
Sbjct: 436 PDTFAKLMRGLRKLYNRQIAAEITEKV 462


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 155/329 (47%), Gaps = 8/329 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY- 196
           LC   R ++     LR+MP     P+   YN +++  C++     A  L+  M   D   
Sbjct: 141 LCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRG 200

Query: 197 ---PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+++Y ++I G    G+L+ A  LF  M   G + N + Y+ LL G C  G  + A
Sbjct: 201 GCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEA 260

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           + +  +M ++G    P+VVTY +++   C  G   EA  + D M   G  P+     TL+
Sbjct: 261 IGIFRKMCRDG--VEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLL 318

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+  EG L + +QL+D +V  G+      ++ L+    +   + EA   FSKM   G+ 
Sbjct: 319 HGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLH 378

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+ +    ++  LC  G+V +    ++ +   G   + +  +   L+ GLC  +   +A 
Sbjct: 379 PNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGL--TPNGVVFRTLIHGLCACDKWDKAE 436

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +LA  M+ + I     + + ++ HL K G
Sbjct: 437 ELAVEMIGRGICPNTIFFNTLLNHLCKEG 465



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 154/310 (49%), Gaps = 4/310 (1%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +PD  I+N +I  + + G +  A      M    L+P+I+TY +++   C  G+++DA  
Sbjct: 343 QPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMS 402

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
            F  +   G   N V +  L+ G+C     ++A EL  EM   G    PN + + +++  
Sbjct: 403 QFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRG--ICPNTIFFNTLLNH 460

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +GM+  A  I D M  +    + +T +TLI G+C++G +DEA +L++ +V  G   +
Sbjct: 461 LCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPN 520

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++++    +  R+++A  LF +M + GV P  +  S ++  L    ++     LY 
Sbjct: 521 EVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYL 580

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
            + K G    + +  ++++L GLC+ N + +A ++   +      LQ    + +++ L K
Sbjct: 581 WMIKCGIKLPIGT--YNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLK 638

Query: 461 SGDEELITNL 470
            G  +   +L
Sbjct: 639 GGRHDEAKDL 648



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 158/352 (44%), Gaps = 8/352 (2%)

Query: 93  SSFMYN----RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
           ++F YN      C+ +R +Q   ++  ++      GC   V     + N   +    ++A
Sbjct: 166 NAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKA 225

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
             +  +M +  + P+ I YN ++  +C  G    A  + + M    + PD++TY +++  
Sbjct: 226 YCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVY 285

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C  GR  +A  +F  M + G   +   Y  LL G    G + +  +LL  M + G    
Sbjct: 286 LCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNG--TQ 343

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P+   +  +I  +   GM+ EA+    +M   G  PN VT  T++   C  G +D+A   
Sbjct: 344 PDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQ 403

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
            D++++ G   +G  + +L+  L    +  +AE+L  +M+  G+ P+ +  + ++  LC 
Sbjct: 404 FDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCK 463

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            G V     +++ + ++      D   ++ L+ G C      EA KL   M+
Sbjct: 464 EGMVTRAKNIFDLMVRVDV--QCDVITYTTLIDGYCLDGKVDEATKLLEGMV 513



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 136/292 (46%), Gaps = 10/292 (3%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +  +MP    R D   Y+ VI      G +  A   +  +         IT+  ++K
Sbjct: 84  ALSLFNRMP----RADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLK 139

Query: 208 GFCNAGRLEDACGL-FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM--EKEG 264
           G C+  R  DA  +  + M   GC  N  +Y+ LL G+C     ++AL LL  M  +   
Sbjct: 140 GLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTR 199

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           G C P+VV+YT+VI     +G + +A  + D M   G +PN +T + L+ G+C  G   E
Sbjct: 200 GGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKE 259

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  +  K+   G       Y++L+V L +  R  EA K+F  M+  G KPD      ++ 
Sbjct: 260 AIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLH 319

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
                G +++   L + + + G  +  D  I ++ L+G   K+  V+ A LA
Sbjct: 320 GYATEGYLVQMHQLLDVMVRNG--TQPDHYIFNI-LIGAYAKHGMVDEAMLA 368



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 130/283 (45%), Gaps = 3/283 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C  ++    ++ +LC++  +   A  +   M   D++ D I Y  +I  +C  G +  A 
Sbjct: 448 CPNTIFFNTLLNHLCKEG-MVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEAT 506

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L++GM L  + P+ +TY ++I G+C  GR+EDAC LF+ M   G    +V YS +L G+
Sbjct: 507 KLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGL 566

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            +   +  A EL   M K G      + TY  ++Q  C      +AL +   +  +    
Sbjct: 567 FQTRRIAAAKELYLWMIKCG--IKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHL 624

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + +I      G  DEA  L   ++A G V +   Y  ++  L+    L+E + LF
Sbjct: 625 QNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLF 684

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
             +  +G   D    + ++ +L   G+V +       I++  F
Sbjct: 685 LSLEKNGCTADSRMLNALVGKLPQKGEVRKAGVYLSKIDENNF 727



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 126/278 (45%), Gaps = 3/278 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+  LC   ++ ++AM    ++    L P+ +++  +I   C       A+EL   M   
Sbjct: 387 VMDALCRVGKV-DDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGR 445

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+ I + +++   C  G +  A  +F +M R     +++ Y+ L+DG C  G ++ A
Sbjct: 446 GICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEA 505

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +LL  M  +G    PN VTY ++I  +C  G +++A  +  +M + G  P  V  ST++
Sbjct: 506 TKLLEGMVLDG--VKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTIL 563

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G      +  A +L   ++  G     G Y+ ++  L +     +A ++F  +      
Sbjct: 564 HGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFH 623

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
                 ++MI  L  GG+  E   L+  +   G + +V
Sbjct: 624 LQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNV 661


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 175/373 (46%), Gaps = 39/373 (10%)

Query: 94   SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
            S + N  C+   + Q     +DV    KEEG    +   K + +   K    + A+ +  
Sbjct: 637  SLVINCLCKSDDVDQ----ALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFN 692

Query: 154  KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
            ++ E  L PDT +YN ++    +   +  A +L+  M   ++ PD+ TY S++ G   +G
Sbjct: 693  ELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSG 752

Query: 214  RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL------------------- 254
            RLE+A  +F  M   G   ++VAY++L+D + + G +  AL                   
Sbjct: 753  RLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYS 812

Query: 255  ELLGEMEKEG--------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
             L+  + KEG                C+PNV  Y+S+I  F  KGM+  AL + + M+  
Sbjct: 813  SLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRR 872

Query: 301  GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
             C PN VT + L+ G    G L+ A +L++++   G V     Y+ L+  + +   + EA
Sbjct: 873  QCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEA 932

Query: 361  EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            E  F +M   G+ PD +  + +I  L    ++LE   L++ +E+ G+  SV +  ++VL+
Sbjct: 933  ESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVT--YNVLI 990

Query: 421  LGLCRKNHSVEAA 433
              L R     EAA
Sbjct: 991  DILGRAGKVHEAA 1003



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 29/339 (8%)

Query: 82   IWAALQ-SSYRHSSFMYN-------------RACEMSRIKQNPSIIIDVVEAYKEEGCVV 127
            I+  LQ SS    +F+YN              AC++    +N +I+ D+           
Sbjct: 690  IFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLF---------- 739

Query: 128  SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
                  ++  L +  RL  EA  +  KM E    PD + Y +++ +  + G +  A  + 
Sbjct: 740  --TYTSLLDGLGKSGRL-EEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIF 796

Query: 188  KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
            + M      PD++TY S+I      GR+E+A   F+     GC  N+  YS+L+D   + 
Sbjct: 797  RAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKK 856

Query: 248  GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
            G ++RALEL  EM++    C PN+VTY +++      G +  A  +L+ ME +GC P+ V
Sbjct: 857  GMVDRALELFEEMQRR--QCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLV 914

Query: 308  TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
            T + LI G    G +DEA     ++   G V     ++SL+  L +  +L EA +LF  M
Sbjct: 915  TYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSM 974

Query: 368  LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
               G  P  +  +V+I  L   G+V E   ++ +++  G
Sbjct: 975  EEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKG 1013



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 164/343 (47%), Gaps = 35/343 (10%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K+ G V +++   ++ ++  KA    EA  +   + E    PD   YN +I +  + G M
Sbjct: 419 KDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQM 478

Query: 181 IAADELMKGM------------------GLID------LYPDI-------ITYVSMIKGF 209
                ++K M                  G I+       YP +       ITY +++  F
Sbjct: 479 DKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAF 538

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
            + G +++A  L +VMK+H C   +V Y+ L+DG+ + G ++ A+ LL EMEK+G  C P
Sbjct: 539 IHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQG--CEP 596

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +VVTY+S++  F  +   +E+L + D M   GC  +  T S +I   C   ++D+A  + 
Sbjct: 597 SVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVF 656

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
            ++   G     G Y +L+  LV+ +++  A ++F+++  S + PD    ++M+  L   
Sbjct: 657 GRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKS 716

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            +V E   L + ++    L   D   ++ LL GL +     EA
Sbjct: 717 NRVDEACKLVDSMKNQNILP--DLFTYTSLLDGLGKSGRLEEA 757



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 158/347 (45%), Gaps = 8/347 (2%)

Query: 48  KTLATVKAKLDSTCVIEVLHRCFPSQSQMGIR--FFIWAALQSSYRHSSFMYNRACEMSR 105
           K L  +K KL+   V +V+     +Q  + +   FF WA  Q  Y H+   Y    +   
Sbjct: 138 KQLERLKFKLNPGLVCDVV----VNQKDLHLAKCFFTWAGQQDGYSHTVGTYTLMIKRLA 193

Query: 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165
             Q    ++ ++ A  +EG  +S+ ++  +          + A+ +  +M  F   P T 
Sbjct: 194 GAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTN 253

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
           +YN V+ L  + G   +A  +   +G   + PD  T+   +  F  +GRL+ A    + M
Sbjct: 254 MYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEM 313

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
            + G    +  ++ L+D + + G+++ A +    M+     CSPNVVTYT+++      G
Sbjct: 314 IKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNL--RCSPNVVTYTTLVNGLAKAG 371

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            ++EA  +   M+   C+P+ +  +TLI G    G  D A  L  ++   G V +   Y+
Sbjct: 372 RLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYN 431

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
            ++  L +  R  EA +LF  +   G  PD    + +I  L  GGQ+
Sbjct: 432 IMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQM 478



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 130/270 (48%), Gaps = 2/270 (0%)

Query: 122  EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
            EEG    V     + ++  K    + A+ + R M +    PD + Y+++I    ++G + 
Sbjct: 766  EEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVE 825

Query: 182  AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
             A    +        P++  Y S+I  F   G ++ A  LF+ M+R  C  N+V Y+ LL
Sbjct: 826  EAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLL 885

Query: 242  DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
             G+ + G +  A +LL EMEK G  C P++VTY  +I      GM+ EA     RM+  G
Sbjct: 886  SGLAKAGRLNVAEKLLEEMEKVG--CVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKG 943

Query: 302  CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
              P+ +T ++LI+       L EA +L D +   G   S   Y+ L+  L R  ++ EA 
Sbjct: 944  IVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAA 1003

Query: 362  KLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
             +F +M   G  PDG+   +M R L +  Q
Sbjct: 1004 MIFHEMKVKGCMPDGITIGIMKRILSVREQ 1033



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 141/298 (47%), Gaps = 4/298 (1%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           I YN ++  F   G +  A +L++ M   +  P ++TY +++ G   AGRL++A  L + 
Sbjct: 529 ITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLRE 588

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M++ GC  ++V YS+L+    +    E +L L  EM ++G  C  +V TY+ VI   C  
Sbjct: 589 MEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKG--CVADVSTYSLVINCLCKS 646

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             + +AL +  RM+  G  P      TL+     +  +D A Q+ +++     V     Y
Sbjct: 647 DDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVY 706

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           + +V  LV++ R+ EA KL   M    + PD    + ++  L   G++ E F ++  + +
Sbjct: 707 NIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTE 766

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
            G    V +  ++ L+  L +      A  + R M KKR          +++ L K G
Sbjct: 767 EGHEPDVVA--YTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEG 822



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 33/197 (16%)

Query: 82   IWAALQSSYRHSSFMYNRACE----MSRIKQNPSII--------------IDVVEAYKEE 123
            ++++L  S+     M +RA E    M R +  P+I+              ++V E   EE
Sbjct: 845  VYSSLIDSFGKKG-MVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEE 903

Query: 124  ----GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
                GCV  +    ++ +   K  + +EA    ++M E  + PD I + ++I    +   
Sbjct: 904  MEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDK 963

Query: 180  MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
            ++ A EL   M      P ++TY  +I     AG++ +A  +F  MK  GC         
Sbjct: 964  LLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGC--------- 1014

Query: 240  LLDGICRLGSMERALEL 256
            + DGI  +G M+R L +
Sbjct: 1015 MPDGIT-IGIMKRILSV 1030


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 163/324 (50%), Gaps = 17/324 (5%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C  +  +M  + +LC   + A  A+ +LR+MP    RP+ + YN VI  FC +G + AA 
Sbjct: 487 CTTTFNIM--LRHLCSAGKPA-RALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAAL 539

Query: 185 ELMKGM---GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSAL 240
           ++M+ M   G I   P+  TY ++I G+C  GR+++A  +F  M   G      V Y+AL
Sbjct: 540 DIMREMRERGGI--APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNAL 597

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G C  G ++ AL     M + G   +  V TY  ++      G   EA  +++ M   
Sbjct: 598 IGGYCDQGKLDTALLYRDRMVERG--VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 655

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G AP+  T + LI G C EGN+ +A ++ + +   G  ++   Y++L+  L +  +++E 
Sbjct: 656 GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQET 715

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           +KLF + +  G++PD +  + +I      G +   F +  ++EK     + D   ++ L+
Sbjct: 716 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI--APDDVTYNTLM 773

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
            GLC      EA KL   M ++ I
Sbjct: 774 RGLCLLGRVDEARKLIDEMTERGI 797



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 141/266 (53%), Gaps = 6/266 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARL----ANEAMWVLRKMPEFDLRPDTIIYNN 169
           +D    Y++      V M    +NL   A        EA  ++ +M    L PD   YN 
Sbjct: 607 LDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNI 666

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I   C++G++  A E+ + M    +   ++TY ++I      G++++   LF    R G
Sbjct: 667 LINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRG 726

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              +LV Y+AL++     G+++RA E++GEMEK+    +P+ VTY ++++  C  G + E
Sbjct: 727 IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK--RIAPDDVTYNTLMRGLCLLGRVDE 784

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  ++D M   G  P+ VT +TLI G+ ++G++ +A ++ ++++  G   +   Y++L+ 
Sbjct: 785 ARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 844

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPD 375
            L +  +  +AE +  +M+ +G+ PD
Sbjct: 845 GLCKNGQGDDAENMVKEMVENGITPD 870



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 184/394 (46%), Gaps = 52/394 (13%)

Query: 86  LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM--KVIFNLC 139
           L+   R ++  YN      C   R++      +D++   +E G +   +     VI   C
Sbjct: 511 LRQMPRPNAVTYNTVIAGFCSRGRVQA----ALDIMREMRERGGIAPNQYTYGTVISGWC 566

Query: 140 EKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKGDM------------------ 180
           +  R+ +EA+ V  +M  + +++P+ ++YN +I  +C++G +                  
Sbjct: 567 KVGRV-DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMT 625

Query: 181 -----------------IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
                              A EL++ MG   L PD+ TY  +I G C  G ++ A  +F+
Sbjct: 626 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 685

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M R G  A +V Y+AL+  + + G ++   +L  E  + G    P++V Y ++I     
Sbjct: 686 NMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRG--IRPDLVLYNALINSHST 743

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G +  A  I+  ME    AP+ VT +TL++G C+ G +DEA +LID++   G       
Sbjct: 744 SGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVT 803

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y++L+        +K+A ++ ++M+  G  P  L  + +I+ LC  GQ  +   + +++ 
Sbjct: 804 YNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMV 863

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNH-SVEAAKLA 436
           + G   + D   +  L+ GL  ++  +++  +LA
Sbjct: 864 ENGI--TPDDSTYISLIEGLTTEDERAIDDERLA 895



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 45/255 (17%)

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  LF  M R         ++ +L  +C  G   RALELL +M +      PN VTY +V
Sbjct: 472 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR------PNAVTYNTV 525

Query: 278 IQIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           I  FC +G ++ AL I+  M E  G APN+ T  T+I G+C  G +DEA ++ D+++  G
Sbjct: 526 IAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG 585

Query: 337 SVSS---------GG---------------------------CYSSLVVELVRTKRLKEA 360
            V           GG                            Y+ LV  L    R  EA
Sbjct: 586 EVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEA 645

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +L  +M   G+ PD    +++I   C  G V +   ++E++ + G  ++V +  ++ L+
Sbjct: 646 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVT--YTALI 703

Query: 421 LGLCRKNHSVEAAKL 435
             L +K    E  KL
Sbjct: 704 YALSKKGQVQETDKL 718


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 138/264 (52%), Gaps = 2/264 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  V   + ++ LRP  + +N ++  +   GD+     L   M    + PD+ TY  +I 
Sbjct: 155 AQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLIN 214

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C   ++++A  +   M  +G   N V ++ L+DG C+ G ++ A+E+  +M  +G   
Sbjct: 215 GLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQG--F 272

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+++TY ++I   C +G + +A  +++ M   G  P+++T +TLI G C EG+L+  ++
Sbjct: 273 LPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFE 332

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L  +++          Y++L+  L R  R  +AEK+  +ML  G+KPD    ++++ E C
Sbjct: 333 LRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFC 392

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSV 411
             G V     L  ++++ G +  V
Sbjct: 393 KTGDVKTASKLLREMQRNGPVPGV 416



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 149/309 (48%), Gaps = 16/309 (5%)

Query: 76  MGIRFF--IWA----ALQSSYRHSSFMYN----RACEMSRIKQNPSIIIDVVEAYKEEGC 125
           M +R+F  +W      L+  Y  S + +N    R C+   ++    ++ D +  +     
Sbjct: 112 MKLRYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRL-AQMVFDAITKWSLRPS 170

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           VVS      + N   +    +E   +   M    ++PD   Y+ +I   C++  M  A+E
Sbjct: 171 VVS---FNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANE 227

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           ++  M    L P+ +T+ ++I G C  G+++ A  ++K M   G   +L+ Y+ L+ G+C
Sbjct: 228 MLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLC 287

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           R G + +A +L+ EM  +G    P+ +TYT++I   C +G ++    +  RM       +
Sbjct: 288 RRGDLGQARDLVEEMIMKG--LKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLD 345

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            VT + LI G C EG   +A +++ +++  G     G Y+ ++ E  +T  +K A KL  
Sbjct: 346 EVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLR 405

Query: 366 KMLASGVKP 374
           +M  +G  P
Sbjct: 406 EMQRNGPVP 414



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 132/274 (48%), Gaps = 4/274 (1%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P +  +  ++  FC  G +  A  +F  + +     ++V+++ L++G  RLG ++    L
Sbjct: 134 PSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRL 193

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
              M   G    P+V TY+ +I   C +  M EA  +L+ M   G  PN VT +TLI G 
Sbjct: 194 KSAMHATG--VQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGH 251

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G +D A ++  ++++ G +     Y++L+  L R   L +A  L  +M+  G+KPD 
Sbjct: 252 CKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDK 311

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  + +I   C  G +   F L + + +      +D   ++ L+ GLCR+  + +A K+ 
Sbjct: 312 ITYTTLIDGSCKEGDLEITFELRKRMIRENI--RLDEVTYTALISGLCREGRAGDAEKML 369

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           R ML   +         I+    K+GD +  + L
Sbjct: 370 REMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKL 403



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 84  AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKA 142
             +Q      S + N  C+ S++ +   ++ ++++     G V + V    +I   C+  
Sbjct: 200 TGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLD----NGLVPNGVTFTTLIDGHCKNG 255

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           ++ + AM + ++M      PD I YN +I   C +GD+  A +L++ M +  L PD ITY
Sbjct: 256 KV-DLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITY 314

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
            ++I G C  G LE    L K M R     + V Y+AL+ G+CR G    A ++L EM  
Sbjct: 315 TTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLT 374

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            G    P+  TYT ++  FC  G +K A  +L  M+  G  P  VT
Sbjct: 375 VG--LKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVPGVVT 418



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 124/322 (38%), Gaps = 82/322 (25%)

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           KG  + DLY     +  ++  +  +G + DA   F++ K+H           +L+ + +L
Sbjct: 59  KGTQISDLY----VFSGLMLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMKL 114

Query: 248 GSMERALELLGEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
               R   L+    KE  +C   P++  +  ++  FC +G M+ A  + D +      P+
Sbjct: 115 ----RYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPS 170

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            V+ +TL+ G+   G+LDE +                             RLK A     
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGF-----------------------------RLKSA----- 196

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQ-------------------------VLEGFC--- 397
            M A+GV+PD    SV+I  LC   +                         +++G C   
Sbjct: 197 -MHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNG 255

Query: 398 -------LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
                  +Y+ +   GFL   D   ++ L+ GLCR+    +A  L   M+ K +      
Sbjct: 256 KVDLAMEIYKQMLSQGFLP--DLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKIT 313

Query: 451 VDKIVEHLKKSGDEELITNLPK 472
              +++   K GD E+   L K
Sbjct: 314 YTTLIDGSCKEGDLEITFELRK 335


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 168/380 (44%), Gaps = 70/380 (18%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  +C++ R   EA  ++ +M +  + P+ I Y+ VI    + G++  +  +   M + 
Sbjct: 250 LIHGVCKECRFK-EAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVR 308

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P++ T+ S+IKGF   GR+ DA GL+ +M R G + N+VAY+ L+ G+C  G+M+ A
Sbjct: 309 GCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEA 368

Query: 254 LELLGEMEKEG------------------GD---------------CSPNVVTYTSVIQI 280
           + +  +MEK+                   GD               C PNVV YT ++ +
Sbjct: 369 ISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDV 428

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C   M  +A  ++D M + GC P  +T +  IKG C  G ++ A  ++D++     + +
Sbjct: 429 LCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPN 488

Query: 341 GGCYSSLVVELVRTKRLKEA-----------------------------------EKLFS 365
              Y+ L+  L R    +EA                                    +L  
Sbjct: 489 IRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLG 548

Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           KML +G+K D +  +  +   C  G+V     + ++I       + D   H+++L G+C 
Sbjct: 549 KMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNISAEKEFRA-DIITHTIILWGICN 607

Query: 426 KNHSVEAAKLARFMLKKRIW 445
              + EA      MLK+ I+
Sbjct: 608 WLGTEEAVVYLHEMLKRGIF 627



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 154/306 (50%), Gaps = 11/306 (3%)

Query: 121 KEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           K EG   +V    V+   LC+  ++ + A  +L +M      PD + Y  VI   C+ GD
Sbjct: 171 KSEGLEPNVFTYNVLLKALCQNGKV-DGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGD 229

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           +  A EL      +   P +  Y ++I G C   R ++A  L   M   G   N+++YS 
Sbjct: 230 VDKARELA-----MKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYST 284

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           ++  +  +G++E +L + G M   G  C PNV T+TS+I+ F  +G + +A+G+ + M  
Sbjct: 285 VISCLSDMGNVELSLAVFGRMFVRG--CRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIR 342

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G +PN V  +TLI G C +GN+DEA  + +++       +   YS+++    ++  L  
Sbjct: 343 EGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVS 402

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A + ++KM+  G +P+ +  + M+  LC      + F L +++   G   +V +   +  
Sbjct: 403 ACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVIT--FNNF 460

Query: 420 LLGLCR 425
           + GLCR
Sbjct: 461 IKGLCR 466



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/405 (22%), Positives = 184/405 (45%), Gaps = 16/405 (3%)

Query: 39  LQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYN 98
           L  NPN  EK  +     +  + V++VL +     S +   +F   +   +++H+   Y 
Sbjct: 22  LATNPNP-EKANSLNVCPVSESHVVKVLRQEHDIVSSL--EYFKSLSNSGTFKHTHLTYE 78

Query: 99  RACEMSRIKQNPSI--IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
               + ++ +N  +  +  +++  K E    S ++ + +     ++ L  + + +  ++ 
Sbjct: 79  TM--IDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIR 136

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           EF   P   IYN V+     +      + L   M    L P++ TY  ++K  C  G+++
Sbjct: 137 EFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVD 196

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            AC L   M   GC  + V+Y+ ++  +C+LG +++A EL  + E       P V  Y +
Sbjct: 197 GACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFE-------PVVPVYNA 249

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   C +   KEA  +++ M   G  PN ++ ST+I      GN++ +  +  ++   G
Sbjct: 250 LIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRG 309

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
              +   ++SL+       R+ +A  L++ M+  GV P+ +A + +I  LC  G + E  
Sbjct: 310 CRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAI 369

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
            ++  +EK     +V +  +S ++ G  +    V A +    M+ 
Sbjct: 370 SVWNQMEKDSIRPNVTT--YSTIIYGFAKSGDLVSACETWNKMIN 412



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 4/285 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             P   +YN +I   C++     A +LM  M    + P++I+Y ++I    + G +E + 
Sbjct: 240 FEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSL 299

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +F  M   GC  N+  +++L+ G    G +  A+ L   M +EG   SPNVV Y ++I 
Sbjct: 300 AVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREG--VSPNVVAYNTLIH 357

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G M EA+ + ++ME     PN  T ST+I GF   G+L  A +  +K++  G   
Sbjct: 358 GLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRP 417

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y+ +V  L +     +A  L   M++ G  P  +  +  I+ LC  G+V     + 
Sbjct: 418 NVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVL 477

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + +EK   L ++ +  ++ LL GL R N   EA  L R + ++++
Sbjct: 478 DQMEKYECLPNIRT--YNELLDGLFRANAFREACGLIRELEERKV 520



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 132/289 (45%), Gaps = 43/289 (14%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--- 190
           +I  LC    + +EA+ V  +M +  +RP+   Y+ +I  F + GD+++A E    M   
Sbjct: 355 LIHGLCSDGNM-DEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINC 413

Query: 191 --------------------------GLIDLY------PDIITYVSMIKGFCNAGRLEDA 218
                                      LID        P +IT+ + IKG C AGR+E A
Sbjct: 414 GCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWA 473

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME--KEGGDCSPNVVTYTS 276
             +   M+++ C  N+  Y+ LLDG+ R  +   A  L+ E+E  K   DC    VTY +
Sbjct: 474 MNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDC----VTYNT 529

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           ++  F   GM ++ L +L +M   G   + +T++T +  +C  G +  A +++D + A  
Sbjct: 530 IMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNISAEK 589

Query: 337 SVSSGGCYSSLVVE-LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
              +     ++++  +      +EA     +ML  G+ P+    +V++R
Sbjct: 590 EFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWNVLVR 638



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 104/226 (46%), Gaps = 3/226 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           GC  +V +   + ++  +  + ++A  ++  M      P  I +NN I+  C  G +  A
Sbjct: 414 GCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWA 473

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             ++  M   +  P+I TY  ++ G   A    +ACGL + ++      + V Y+ ++ G
Sbjct: 474 MNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYG 533

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG-C 302
               G  ++ L+LLG+M   G     + +T  + +  +C  G +K A+ +LD + A    
Sbjct: 534 FSFNGMHQQVLQLLGKMLVNG--IKLDTITVNTTVNAYCKLGKVKTAIKVLDNISAEKEF 591

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
             + +T + ++ G C     +EA   + +++  G   +   ++ LV
Sbjct: 592 RADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWNVLV 637


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 156/332 (46%), Gaps = 32/332 (9%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R A+EA+ +LR M      PD ++Y  VI   C++G +  A  L+  M L+    
Sbjct: 169 LCRLGR-ADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAA 227

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ T+  +++G C  GR+ +A  L   M   GC   ++ Y  LL G+CR+   + A  +L
Sbjct: 228 DVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAML 287

Query: 258 GEMEK---------------EG--------------GDCSPNVVTYTSVIQIFCGKGMMK 288
           G + +               EG                C P+  TY+ ++   C  G + 
Sbjct: 288 GRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIG 347

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            A+ +L  ME  G APN VT + ++  FC  G  D+   L++++ A G   +   Y+ ++
Sbjct: 348 SAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMI 407

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L +  R+ EA  L  +M + G  PD  + + +I  LC   Q+ E   ++E++ + G +
Sbjct: 408 YALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVV 467

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           +  +   ++ ++  L R     +A +LA+ M+
Sbjct: 468 A--NGITYNTIIHALLRDGRWQDAVRLAKEMI 497



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 204/458 (44%), Gaps = 86/458 (18%)

Query: 62  VIEVLHRCFPSQSQMGI----RFFIWAALQSSYR--HSSFMYNRA----CEMSRIKQNPS 111
           V+ +L R   S SQ G+    RF ++  +    R   ++F +  A    C + R  +   
Sbjct: 121 VVPLLQRRPVSASQGGLPRARRFALYRRMVHRDRVPPTTFTFGVAARALCRLGRADE--- 177

Query: 112 IIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
             + ++      GCV  +V    VI  LC++  +  EA  +L +M       D   +++V
Sbjct: 178 -ALALLRGMARHGCVPDAVLYQTVIHALCDQGGV-TEAATLLNEMLLMGCAADVNTFDDV 235

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA------------------ 212
           +R  C  G +  A  L+  M      P ++TY  +++G C                    
Sbjct: 236 VRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNV 295

Query: 213 -------------GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
                        G+L +A  L++ M   GC  +   YS L+ G+C+LG +  A+ LL E
Sbjct: 296 VLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLRE 355

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGM--------------------------------- 286
           MEK+G   +PNVVTYT V+  FC  GM                                 
Sbjct: 356 MEKKG--FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKD 413

Query: 287 --MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             M EA+G++  M + GC P+  + +T+I   C    ++EA  + + ++  G V++G  Y
Sbjct: 414 GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITY 473

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++++  L+R  R ++A +L  +M+  G   D ++ + +I+ +C  G V     L E++ +
Sbjct: 474 NTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAE 533

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            G   +  S  +++L+  LC++    +A +L++ ML +
Sbjct: 534 KGIKPNNVS--YNILISELCKERRVRDALELSKQMLNQ 569



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 159/324 (49%), Gaps = 10/324 (3%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++ E    +GC        ++ + LC+  R+ + A+ +LR+M +    P+ + Y  V+  
Sbjct: 316 ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGS-AVRLLREMEKKGFAPNVVTYTIVLHS 374

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+ G       L++ M    L  +   Y  MI   C  GR+++A GL + M+  GC  +
Sbjct: 375 FCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPD 434

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           + +Y+ ++  +C    ME A  +   + +EG     N +TY ++I      G  ++A+ +
Sbjct: 435 ICSYNTIIYHLCNNEQMEEAEHMFENLLEEG--VVANGITYNTIIHALLRDGRWQDAVRL 492

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M   GC+ + V+ + LIK  C +GN+D +  L++++   G   +   Y+ L+ EL +
Sbjct: 493 AKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 552

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            +R+++A +L  +ML  G+ PD +  + +I  LC  G +     L E +       +V  
Sbjct: 553 ERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHN----ENVHP 608

Query: 414 DI--HSVLLLGLCRKNHSVEAAKL 435
           DI  +++L+   C+     +AA L
Sbjct: 609 DIITYNILISWHCKVRLLDDAAML 632



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 141/301 (46%), Gaps = 6/301 (1%)

Query: 87  QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
           Q      S + +  C++ RI       + ++   +++G   +V    ++ +   K  + +
Sbjct: 327 QPDAHTYSILMHGLCKLGRIGS----AVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 382

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +   +L +M    L  ++  YN +I   C+ G M  A  L++ M      PDI +Y ++I
Sbjct: 383 DTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 442

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
              CN  ++E+A  +F+ +   G  AN + Y+ ++  + R G  + A+ L  EM   G  
Sbjct: 443 YHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHG-- 500

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           CS +VV+Y  +I+  C  G +  +L +L+ M   G  PN V+ + LI   C E  + +A 
Sbjct: 501 CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDAL 560

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L  +++  G       Y++L+  L +   +  A  L  K+    V PD +  +++I   
Sbjct: 561 ELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWH 620

Query: 387 C 387
           C
Sbjct: 621 C 621



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 34/234 (14%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I+ LC+  R+ +EAM ++++M      PD   YN +I   C    M  A+ + + +   
Sbjct: 406 MIYALCKDGRM-DEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEE 464

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  + ITY ++I      GR +DA  L K M  HGC+ ++V+Y+ L+  +C+ G+++R+
Sbjct: 465 GVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRS 524

Query: 254 LELLGEMEKEG---------------------------------GDCSPNVVTYTSVIQI 280
           L LL EM ++G                                    +P++VTY ++I  
Sbjct: 525 LVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLING 584

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
            C  G M  AL +L+++      P+ +T + LI   C    LD+A  L+++ +A
Sbjct: 585 LCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMA 638



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 4/182 (2%)

Query: 122 EEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           EEG V + +    +I  L    R   +A+ + ++M       D + YN +I+  C+ G++
Sbjct: 463 EEGVVANGITYNTIIHALLRDGRW-QDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNV 521

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             +  L++ M    + P+ ++Y  +I   C   R+ DA  L K M   G A ++V Y+ L
Sbjct: 522 DRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTL 581

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++G+C++G M  AL LL ++  E  +  P+++TY  +I   C   ++ +A  +L+R  A 
Sbjct: 582 INGLCKMGWMHAALNLLEKLHNE--NVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAA 639

Query: 301 GC 302
            C
Sbjct: 640 VC 641



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 115 DVVEAYKE---EGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           D V   KE    GC + V     +I  +C+   + + ++ +L +M E  ++P+ + YN +
Sbjct: 488 DAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNV-DRSLVLLEEMAEKGIKPNNVSYNIL 546

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I   C++  +  A EL K M    L PDI+TY ++I G C  G +  A  L + +     
Sbjct: 547 ISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 606

Query: 231 AANLVAYSALLDGICRLGSMERALELL 257
             +++ Y+ L+   C++  ++ A  LL
Sbjct: 607 HPDIITYNILISWHCKVRLLDDAAMLL 633


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 158/342 (46%), Gaps = 40/342 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC   R +  A  +L++M + DL PD   YN +I  F  +G +  A  +   M   
Sbjct: 301 MIDKLCRIKR-STRAFLLLKRMRKDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQ 359

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL------------ 241
           +L P + TY +MI G+C   R++ A  +   M+  G   + + YSALL            
Sbjct: 360 NLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPA 419

Query: 242 -----------------------DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
                                  DG C++G + +A ++L  M ++G D  P+V+TY+++I
Sbjct: 420 IYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGID--PDVITYSALI 477

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C    M E   IL RM+  G  PN V  +TLI  +C  G + EA +    +   G V
Sbjct: 478 NGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLV 537

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
           ++   +++L+    R   + EAE     M    +  D ++ + +I   C  G ++  F +
Sbjct: 538 ANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSV 597

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           Y+D+ + G+  +V +  +  LL GLC+  H V+A +    +L
Sbjct: 598 YDDMVRYGYSPNVCT--YQNLLRGLCQGGHLVQARQFMSCLL 637



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 175/407 (42%), Gaps = 50/407 (12%)

Query: 32  AERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYR 91
           A   + H+ +   N+  ++AT    +D  C    + +     S+M I       + S   
Sbjct: 349 ARYVFNHMLRQ--NLVPSVATYTTMIDGYCRNRRIDKALSILSEMQIT----GVMPSELT 402

Query: 92  HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           +S+ + N  C++S +   P+I +  +E  K  G  ++  M  ++ +  C+   ++ +A  
Sbjct: 403 YSALL-NGYCKVSML--GPAIYL--MEDLKSRGITINKTMRTILIDGFCQVGEIS-KAKQ 456

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L+ M E  + PD I Y+ +I   C    M    E++  M    + P+ + Y ++I  +C
Sbjct: 457 ILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYC 516

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALL----------------------------- 241
            AG +++A   F  + R G  AN V ++ALL                             
Sbjct: 517 KAGYVKEALKHFVDIYRRGLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSV 576

Query: 242 ------DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
                 D  C  G++  A  +  +M + G   SPNV TY ++++  C  G + +A   + 
Sbjct: 577 SFNRIIDSYCHRGNIVGAFSVYDDMVRYG--YSPNVCTYQNLLRGLCQGGHLVQARQFMS 634

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            +  +  A +  T + L+ G C  G LDEA  L +K++    +     Y+ L+    R  
Sbjct: 635 CLLDIPFAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKG 694

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           ++  A  +   ML  GV PD +A + ++  L   GQV     ++ +I
Sbjct: 695 KILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEI 741



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 139/289 (48%), Gaps = 9/289 (3%)

Query: 159 DLRPDTIIYNNVIRL-----FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           DL+   I  N  +R      FC+ G++  A +++K M    + PD+ITY ++I G C   
Sbjct: 425 DLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMA 484

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
           ++ +   +   M++ G   N V Y+ L+   C+ G ++ AL+   ++ + G   +P  V 
Sbjct: 485 KMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLVANP--VI 542

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           + +++  F  +GM+ EA      M  +  + + V+ + +I  +C  GN+  A+ + D +V
Sbjct: 543 HNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMV 602

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G   +   Y +L+  L +   L +A +  S +L      D    + ++  +C  G + 
Sbjct: 603 RYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGTLD 662

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           E   L E + K   L  + +  +++LL G CRK   + A  + + ML+K
Sbjct: 663 EALDLCEKMIKNNCLPDIHT--YTILLSGFCRKGKILPALVILQMMLEK 709



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 137/270 (50%), Gaps = 2/270 (0%)

Query: 146  NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            ++++++ + M    +RPD + Y  +I    E G +  A + ++ M L  ++PD + +  +
Sbjct: 803  SKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDIL 862

Query: 206  IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
            I  F    ++ +A  +F  MK    + +   +SA+++G+ R G ++ + ++L EM + G 
Sbjct: 863  ITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVG- 921

Query: 266  DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
               PN   Y +++   C  G +  A  + + M+A+G  P  V  S++I+G C  G L+EA
Sbjct: 922  -LQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEA 980

Query: 326  YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
              +   ++  G V +   +++L+  L +  ++ +A  L   M    ++ D ++ +V+I  
Sbjct: 981  VIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLRVDVVSYNVLITG 1040

Query: 386  LCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            LC    + +   LY +++  G   ++ + I
Sbjct: 1041 LCKDKHISDALDLYGEMKSKGLWPNITTYI 1070



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 140/305 (45%), Gaps = 4/305 (1%)

Query: 141  KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
            K+R  N    ++  M + ++ P++  YN ++  + ++G    +  L K M    + PD +
Sbjct: 763  KSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNV 822

Query: 201  TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
            TY  +I G    G ++ A    + M   G   + + +  L+        M  AL++   M
Sbjct: 823  TYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCM 882

Query: 261  EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            +      SP+  T++++I     KG +  +  +L  M  +G  PN      L+   C  G
Sbjct: 883  K--WLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVG 940

Query: 321  NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
             +D A++L +++ A G V +    SS++  L R  +L+EA  +FS M+ SG+ P     +
Sbjct: 941  EIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFT 1000

Query: 381  VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
             ++  LC   ++ +   L   +E       VD   ++VL+ GLC+  H  +A  L   M 
Sbjct: 1001 TLMHSLCKESKIADALHLKRLMELCRL--RVDVVSYNVLITGLCKDKHISDALDLYGEMK 1058

Query: 441  KKRIW 445
             K +W
Sbjct: 1059 SKGLW 1063



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 124/267 (46%), Gaps = 2/267 (0%)

Query: 144  LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
            L + A+  L KM    + PD ++++ +I  F EK  M  A ++   M  + + P   T+ 
Sbjct: 836  LIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFS 895

Query: 204  SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
            +MI G    G L+ +  +   M + G   N   Y AL++  CR+G ++RA  L  EM+  
Sbjct: 896  AMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAI 955

Query: 264  GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
            G    P  V  +S+I+  C  G ++EA+ +   M   G  P   T +TL+   C E  + 
Sbjct: 956  G--IVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIA 1013

Query: 324  EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            +A  L   +           Y+ L+  L + K + +A  L+ +M + G+ P+      + 
Sbjct: 1014 DALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLT 1073

Query: 384  RELCLGGQVLEGFCLYEDIEKIGFLSS 410
              +   G+V  G  L EDIE+ G + +
Sbjct: 1074 GAMYSTGRVQNGEELLEDIEERGLIPA 1100



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 131/293 (44%), Gaps = 21/293 (7%)

Query: 109 NPSIIIDVVEAYKEEGCVV-----------------SVKMMKVIFNLCEKARLANEAMWV 151
           NP I   ++ A+  EG +                  SV   ++I + C +  +   A  V
Sbjct: 539 NPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVG-AFSV 597

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
              M  +   P+   Y N++R  C+ G ++ A + M  +  I    D  T+ +++ G C 
Sbjct: 598 YDDMVRYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICR 657

Query: 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
            G L++A  L + M ++ C  ++  Y+ LL G CR G +  AL +L  M ++G    P+ 
Sbjct: 658 YGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKG--VVPDT 715

Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEAL-GCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           V YT ++     +G +K A  +   +    G   + +  ++L+ G+    N++   +++ 
Sbjct: 716 VAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMMS 775

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            +       +   Y+ L+   V+  +  ++  L+  M+  G++PD +   ++I
Sbjct: 776 DMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLI 828



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 129/267 (48%), Gaps = 8/267 (2%)

Query: 113  IIDVVEAYKEEGCVVSVKMMKVIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIY 167
            +ID+   + E+  +  +   +++F++      EK+++ N A+ V   M    + P +  +
Sbjct: 836  LIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHN-ALQVFNCMKWLHMSPSSKTF 894

Query: 168  NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
            + +I     KG +  + +++  M  + L P+   Y++++   C  G ++ A  L + MK 
Sbjct: 895  SAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKA 954

Query: 228  HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
             G     VA S+++ G+CR G +E A+ +   M + G    P V T+T+++   C +  +
Sbjct: 955  IGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSG--MVPTVATFTTLMHSLCKESKI 1012

Query: 288  KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
             +AL +   ME      + V+ + LI G C + ++ +A  L  ++ + G   +   Y +L
Sbjct: 1013 ADALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITL 1072

Query: 348  VVELVRTKRLKEAEKLFSKMLASGVKP 374
               +  T R++  E+L   +   G+ P
Sbjct: 1073 TGAMYSTGRVQNGEELLEDIEERGLIP 1099



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 7/245 (2%)

Query: 21   IFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRF 80
            +F +  T  S   + +  LQ   N ++    +  +K  S  +  ++ + +   S   +  
Sbjct: 858  VFDILITAFSEKSKMHNALQVF-NCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHE 916

Query: 81   FIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCV-VSVKMMKVIFNLC 139
             +   LQ ++ H   + N  C +  I +       + E  K  G V   V    +I  LC
Sbjct: 917  MLQVGLQPNHTHYIALVNAKCRVGEIDR----AFRLKEEMKAIGIVPAEVAESSIIRGLC 972

Query: 140  EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
               +L  EA+ V   M    + P    +  ++   C++  +  A  L + M L  L  D+
Sbjct: 973  RCGKL-EEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLRVDV 1031

Query: 200  ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            ++Y  +I G C    + DA  L+  MK  G   N+  Y  L   +   G ++   ELL +
Sbjct: 1032 VSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAMYSTGRVQNGEELLED 1091

Query: 260  MEKEG 264
            +E+ G
Sbjct: 1092 IEERG 1096


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 156/352 (44%), Gaps = 57/352 (16%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+ N   K RL +    V +KM    +  +  +YN +I   C+ GD+  AD L+  M   
Sbjct: 170 VLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESK 229

Query: 194 DLYPDIIT-----------------------------------YVSMIKGFCNAGRLEDA 218
            ++PD+ T                                   Y S+I GFC  GR+ +A
Sbjct: 230 CVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREA 289

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             LFK ++      N V Y+ L+DG CRL  +++AL L  EME +G    P VVTY S++
Sbjct: 290 MRLFKEIR--DATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQG--LYPTVVTYNSIL 345

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
           +  C  G +++A  +L+ M      P+ VT +TLI  +C  G++  A ++ +++V  G  
Sbjct: 346 RKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLK 405

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                Y +L+    + + +  A++L   ML +G  P            C    +++G+C 
Sbjct: 406 LDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSP----------SYCTYSWLVDGYCN 455

Query: 399 YEDIEKIGFLSS--------VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            ++ E +  L          VD  ++  L+   C++     A K+   M +K
Sbjct: 456 QQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEK 507



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 157/356 (44%), Gaps = 41/356 (11%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G   ++ +  V+ + C K+    +A  +L +M    + PD   YN +I L+C+KG    A
Sbjct: 195 GVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEA 254

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             +   M    + PDI+TY S+I GFC  GR+ +A  LFK ++      N V Y+ L+DG
Sbjct: 255 LSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIR--DATPNHVTYTTLIDG 312

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV-------------------------- 277
            CRL  +++AL L  EME +G    P VVTY S+                          
Sbjct: 313 YCRLNDLDQALRLREEMEAQG--LYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIE 370

Query: 278 ---------IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
                    I  +C  G MK AL + +RM   G   ++ T   LI GFC    +D A +L
Sbjct: 371 PDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKEL 430

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388
           +  ++  G   S   YS LV      +  +   KL  + +  G+  D      +IR  C 
Sbjct: 431 LLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCK 490

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
             QV     ++  +++ G L   DS I++ L     +   +  A+ L   M K+R+
Sbjct: 491 REQVDYAKKIFSLMQEKGTLG--DSVIYTSLAYAYWKLGKANAASDLLDEMYKRRL 544



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           +S LV+    TK  +EA ++F  M+ +G +P   AC+V++  L         + +Y+ + 
Sbjct: 133 FSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMA 192

Query: 404 KIGFLSSVDSDIHSV-LLLGLCRKNHSVEAA 433
           +IG    V+++IH   +L+  C K+  VE A
Sbjct: 193 RIG----VEANIHVYNVLIHACCKSGDVEKA 219


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 152/304 (50%), Gaps = 4/304 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V M   I +   K +L +EA  +  +M    +  D + YN +I  FC  G +  A  L+ 
Sbjct: 199 VVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLN 258

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M L  + P++ TY  ++   C  G++++A  +  VM +     +++ YS L+DG   + 
Sbjct: 259 EMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVY 318

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +++A  +   M   G   +P+V TYT +I  FC   M+ EAL +   M      P  VT
Sbjct: 319 EVKKAQHVFNAMSLMG--VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVT 376

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S+LI G C  G +   + LID++   G  +    YSSL+  L +   L  A  LF+KM 
Sbjct: 377 YSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMK 436

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
              ++P+    ++++  LC GG++ +   +++D+   G+  +V +  ++V++ G C++  
Sbjct: 437 DQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYT--YNVMINGHCKQGL 494

Query: 429 SVEA 432
             EA
Sbjct: 495 LEEA 498



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 181/377 (48%), Gaps = 14/377 (3%)

Query: 93  SSFMYNRACEMSRIKQNPSI--IIDVVEAYKEEGCV---VSVKMMKVIFNLCEKARLANE 147
           SSF+ N +       Q PSI  + D V  +    C+     +     I +   K +  + 
Sbjct: 19  SSFLQNSSHSHFH-SQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYST 77

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ +  ++    ++PD I  N +I  FC  G +     ++  +      PD +T  ++IK
Sbjct: 78  AVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIK 137

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           G C  G+++ A      +   G   N V+Y+ L++G+C++G    A++ L ++  +G   
Sbjct: 138 GLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKI--DGRLT 195

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+VV Y ++I   C   ++ EA G+   M   G + + VT +TLI GFC+ G L EA  
Sbjct: 196 KPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIG 255

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
           L++++V      +   Y+ LV  L +  ++KEA+ + + ML + VKPD +  S ++    
Sbjct: 256 LLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYF 315

Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIH--SVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
           L  +V +   ++  +  +G    V  D+H  ++L+ G C+     EA  L + M +K + 
Sbjct: 316 LVYEVKKAQHVFNAMSLMG----VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMV 371

Query: 446 LQGPYVDKIVEHLKKSG 462
                   +++ L KSG
Sbjct: 372 PGIVTYSSLIDGLCKSG 388



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 139/272 (51%), Gaps = 6/272 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  ++K+  S++  +++A  +   +    +M   F + E      +A  V   M    +
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYE----VKKAQHVFNAMSLMGV 335

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   Y  +I  FC+   +  A  L K M   ++ P I+TY S+I G C +GR+     
Sbjct: 336 TPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWD 395

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L   M+  G  A+++ YS+L+DG+C+ G ++RA+ L  +M+ +  +  PN+ T+T ++  
Sbjct: 396 LIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQ--EIRPNIFTFTILLDG 453

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +K+A  +   +   G   N  T + +I G C +G L+EA  ++ K+   G + +
Sbjct: 454 LCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPN 513

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
              + ++++ L +     +AEKL  +M+A G+
Sbjct: 514 AFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 154/309 (49%), Gaps = 5/309 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I+  C   +L  EA+ +L +M    + P+   YN ++   C++G +  A  ++  M   
Sbjct: 240 LIYGFCIVGKL-KEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKA 298

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD+ITY +++ G+     ++ A  +F  M   G   ++  Y+ L++G C+   ++ A
Sbjct: 299 CVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEA 358

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           L L  EM ++  +  P +VTY+S+I   C  G +     ++D M   G   + +T S+LI
Sbjct: 359 LNLFKEMHQK--NMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLI 416

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G+LD A  L +K+       +   ++ L+  L +  RLK+A+++F  +L  G  
Sbjct: 417 DGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYH 476

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            +    +VMI   C  G + E   +   +E  G + +  +     +++ L +K+ + +A 
Sbjct: 477 LNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFT--FETIIIALFKKDENDKAE 534

Query: 434 KLARFMLKK 442
           KL R M+ +
Sbjct: 535 KLLRQMIAR 543


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 149/283 (52%), Gaps = 4/283 (1%)

Query: 162  PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
            P  + YN +I    + G + AA      M  + L PD+ITY S++ G+C AG L++A  L
Sbjct: 1223 PTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLL 1282

Query: 222  FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            F  ++R G A  ++ Y+ L+DG CRLG +E A  L  EM ++G  C PNV TYT +++  
Sbjct: 1283 FGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQG--CLPNVCTYTILMKGS 1340

Query: 282  CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
                 +  A    D M + G  P+    +T I    + G++  A++L + ++  G  S  
Sbjct: 1341 LNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDT 1400

Query: 342  GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
              Y+ L+  L +T  LK+A++L  KM+++G++PD +  + +I   C  G + E   ++ +
Sbjct: 1401 VTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNN 1460

Query: 402  IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            +   G L S  +   +V++   CR+ +   A    R ML++ +
Sbjct: 1461 MISDGLLPSAVT--FTVIIHAYCRRGNLYSAYGWFRKMLEEGV 1501



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 162/358 (45%), Gaps = 4/358 (1%)

Query: 85   ALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL 144
             ++ S + SSF YN        +     + D+    + EG + +V     + +   ++ L
Sbjct: 1181 GMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGL 1240

Query: 145  ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
               A     +M    L PD I YN+++  +C+ G++  A  L   +    L P ++TY  
Sbjct: 1241 VEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNI 1300

Query: 205  MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
            +I G+C  G LE+A  L + M   GC  N+  Y+ L+ G   + S+  A E   EM  +G
Sbjct: 1301 LIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKG 1360

Query: 265  GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
                P+   Y + I      G +  A  + + +   G + + VT + LI G C  GNL +
Sbjct: 1361 --LQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKD 1418

Query: 325  AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
            A +L  K+V+ G       Y+ L+        L+EA K+F+ M++ G+ P  +  +V+I 
Sbjct: 1419 AKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIH 1478

Query: 385  ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              C  G +   +  +  + + G     +   ++VL+  LCR   +  A+     ML++
Sbjct: 1479 AYCRRGNLYSAYGWFRKMLEEGV--EPNEITYNVLIHALCRMGRTQLASHHFHEMLER 1534



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 140/279 (50%), Gaps = 5/279 (1%)

Query: 162  PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
            P+ + YN VI     KGD+  A EL++GM L        TY  +I G    G ++    L
Sbjct: 1154 PNDVTYNVVITGLTRKGDLEEAAELVEGMRL-SKKASSFTYNPLITGLLARGCVKKVYDL 1212

Query: 222  FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
               M+  G    +V Y+A++ G+ + G +E A     EM   G    P+V+TY S++  +
Sbjct: 1213 QLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMG--LLPDVITYNSLLNGY 1270

Query: 282  CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
            C  G +KEAL +   +   G AP  +T + LI G+C  G+L+EA  L +++   G + + 
Sbjct: 1271 CKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNV 1330

Query: 342  GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
              Y+ L+   +  + L  A + F +ML+ G++PD  A +  I    + G +   F L E 
Sbjct: 1331 CTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREV 1390

Query: 402  IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            +   G   S D+  +++L+ GLC+  +  +A +L   M+
Sbjct: 1391 LMLEGI--SSDTVTYNILIHGLCKTGNLKDAKELQMKMV 1427



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 142/327 (43%), Gaps = 40/327 (12%)

Query: 141  KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
            KA    EA+ +   +    L P  + YN +I  +C  GD+  A  L + MG     P++ 
Sbjct: 1272 KAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVC 1331

Query: 201  TYVSMIKGFCNA-----------------------------------GRLEDACGLFKVM 225
            TY  ++KG  N                                    G +  A  L +V+
Sbjct: 1332 TYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVL 1391

Query: 226  KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
               G +++ V Y+ L+ G+C+ G+++ A EL  +M   G    P+ +TYT +I   C +G
Sbjct: 1392 MLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNG--LQPDCITYTCLIHAHCERG 1449

Query: 286  MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            +++EA  I + M + G  P+ VT + +I  +C  GNL  AY    K++  G   +   Y+
Sbjct: 1450 LLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYN 1509

Query: 346  SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
             L+  L R  R + A   F +ML  G+  +    +++I   C  G   +    Y ++ + 
Sbjct: 1510 VLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQN 1569

Query: 406  GFLSSVDSDIHSVLLLGL-CRKNHSVE 431
            G     D   H  LL G     +H++E
Sbjct: 1570 GI--HPDYLTHKALLKGFDGHVHHTIE 1594



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 3/229 (1%)

Query: 197  PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
            PD+     +++   +A R +D C + + M   G   ++V Y+ LLD   + G  ++   L
Sbjct: 1082 PDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAML 1141

Query: 257  LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
            L EME  G  C PN VTY  VI     KG ++EA  +++ M  L    +  T + LI G 
Sbjct: 1142 LKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMR-LSKKASSFTYNPLITGL 1200

Query: 317  CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
               G + + Y L  ++   G + +   Y++++  L+++  ++ A+  F++M A G+ PD 
Sbjct: 1201 LARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDV 1260

Query: 377  LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            +  + ++   C  G + E   L+ D+ + G   +V +  +++L+ G CR
Sbjct: 1261 ITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLT--YNILIDGYCR 1307



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 3/150 (2%)

Query: 134  VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            +I   CE+  L  EA  +   M    L P  + +  +I  +C +G++ +A    + M   
Sbjct: 1441 LIHAHCERG-LLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEE 1499

Query: 194  DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             + P+ ITY  +I   C  GR + A   F  M   G  AN   Y+ L+DG C++G+ E A
Sbjct: 1500 GVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDA 1559

Query: 254  LELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            +    EM + G    P+ +T+ ++++ F G
Sbjct: 1560 MRFYFEMHQNG--IHPDYLTHKALLKGFDG 1587



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 14/187 (7%)

Query: 254  LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            L    EM   G   +P+V     V+++        +   + + M  LG  P+ VT +TL+
Sbjct: 1069 LSAFREMASHG--VAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLL 1126

Query: 314  KGFCVEGNLDEAYQLIDKVVAGGS--VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
              F  EG  D+   L+ ++   GS  + +   Y+ ++  L R   L+EA +L   M  S 
Sbjct: 1127 DSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK 1186

Query: 372  VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV---DSDIHSVLLLGLCRKNH 428
             K      + +I  L   G V + + L  ++E  G + +V   ++ IH +L  GL     
Sbjct: 1187 -KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGL----- 1240

Query: 429  SVEAAKL 435
             VEAA++
Sbjct: 1241 -VEAAQV 1246


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 159/315 (50%), Gaps = 5/315 (1%)

Query: 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKG 189
           K   V+  + +K +L  EA+ +L+KM    L+PD + Y+ +I  +C+ G    A  +   
Sbjct: 192 KAEAVLQQMFDKGQL-EEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDS 250

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M      PD  TY +++ G+   G L D   L  +M + G       ++ L+    +  +
Sbjct: 251 MVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNET 310

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           +++A+    EM ++G   SPNVVTYT+VI I C  G +++A+    +M + G +P+ +T 
Sbjct: 311 LDKAMTAFIEMRQKG--FSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITF 368

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           ++LI G C  G   +  +L  +++  G   +    ++++  L +  R+ EA   F +++ 
Sbjct: 369 TSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIH 428

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            GVKPD ++ +++I   CL G++ E   L   +  IG     D+  +S LL G C+    
Sbjct: 429 VGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRP--DNVTYSALLNGYCKNGRV 486

Query: 430 VEAAKLARFMLKKRI 444
            +A  L R M  K +
Sbjct: 487 DDALALYREMFSKDV 501



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 147/282 (52%), Gaps = 4/282 (1%)

Query: 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
           ++N +IR + +   +  A      M      P+++TY ++I   C AGR+EDA   F  M
Sbjct: 297 VFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQM 356

Query: 226 KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
              G + +++ +++L+ G+C +G  ++  +L  EM   G    PN +   +++   C +G
Sbjct: 357 VSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRG--IHPNAIFLNTIMDSLCKEG 414

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            + EA    D++  +G  P+ V+ + LI G+C++G +DE+ +L+ ++V+ G       YS
Sbjct: 415 RVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYS 474

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           +L+    +  R+ +A  L+ +M +  VKP+ +  ++++  L   G+V+     Y  I   
Sbjct: 475 ALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDS 534

Query: 406 GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
           G    +++  ++++L GLC  +   EA ++ + +  K   L+
Sbjct: 535 GIQLGINT--YNIVLGGLCENSFVDEALRMFQGLRSKEFQLE 574



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 156/341 (45%), Gaps = 22/341 (6%)

Query: 103 MSRIKQNPSIII--DVVEAYKEEGCVVS------------VKMMKVIFNLCEKARLANE- 147
           M R  QNP       ++  Y  +G +V             + +   +FN+  +A   NE 
Sbjct: 251 MVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNET 310

Query: 148 ---AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
              AM    +M +    P+ + Y  VI + C+ G +  A      M    L PDIIT+ S
Sbjct: 311 LDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTS 370

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C  G  +    L   M   G   N +  + ++D +C+ G +  A +   ++   G
Sbjct: 371 LIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVG 430

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               P+VV+YT +I  +C  G M E++ +L RM ++G  P+ VT S L+ G+C  G +D+
Sbjct: 431 --VKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDD 488

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  L  ++ +     +   Y+ ++  L    R+  A + + K++ SG++      ++++ 
Sbjct: 489 ALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLG 548

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
            LC    V E   +++ +    F   V +   +++++GL +
Sbjct: 549 GLCENSFVDEALRMFQGLRSKEFQLEVRT--FNIMIVGLLK 587



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 151/327 (46%), Gaps = 26/327 (7%)

Query: 160 LRPDTIIYNNVIRLFCEKGDM-IAADELMKG------MGLIDLY---PDIITYVSMIKGF 209
           L  D   +  +IR FC  G +  A +E  +G      M   D Y   P++++Y  +I G 
Sbjct: 90  LATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGL 149

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL------GEMEK- 262
              G ++ A  LF  M   G   N+V Y++++DG+C+  +M++A  +L      G++E+ 
Sbjct: 150 FKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEA 209

Query: 263 -------EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
                   GG   P+VVTY+ +I  +C  G   EA  I D M   G  P+  T  TL+ G
Sbjct: 210 VRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHG 269

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +  +G L + + L+  ++  G       ++ L+    + + L +A   F +M   G  P+
Sbjct: 270 YATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPN 329

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +  + +I  LC  G+V +    +  +   G   S D    + L+ GLC      +  KL
Sbjct: 330 VVTYTTVIDILCKAGRVEDAVSHFSQMVSEGL--SPDIITFTSLIHGLCTIGEWKKVEKL 387

Query: 436 ARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           +  M+ + I     +++ I++ L K G
Sbjct: 388 SFEMINRGIHPNAIFLNTIMDSLCKEG 414



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 154/351 (43%), Gaps = 56/351 (15%)

Query: 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
           F L E++R +  A+ ++     ++  P+ + YN VI    ++G++  A  L   M     
Sbjct: 112 FALEEESRGSRAAVHMMAD-DGYNCPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGF 170

Query: 196 YPDIITYVSMIKGFCNA----------------GRLEDACGLFKVMKRHGCAANLVAYSA 239
            P+I+TY S+I G C A                G+LE+A  L K M   G   ++V YS 
Sbjct: 171 PPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSL 230

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG-----------MMK 288
           L+D  C++G    A  +   M + G +  P+  TY +++  +  KG           M++
Sbjct: 231 LIDYYCKIGRCTEARNIFDSMVRRGQN--PDAYTYRTLLHGYATKGALVDMHDLLALMIQ 288

Query: 289 EALGILDR------------------------MEALGCAPNRVTISTLIKGFCVEGNLDE 324
           + + + D                         M   G +PN VT +T+I   C  G +++
Sbjct: 289 DGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVED 348

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A     ++V+ G       ++SL+  L      K+ EKL  +M+  G+ P+ +  + ++ 
Sbjct: 349 AVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMD 408

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            LC  G+VLE    ++ I  +G    V S  +++L+ G C      E+ KL
Sbjct: 409 SLCKEGRVLEAHDFFDQIIHVGVKPDVVS--YTILIDGYCLDGKMDESIKL 457



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 14/286 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++ +LC++ R+  EA     ++    ++PD + Y  +I  +C  G M  + +L+  M  I
Sbjct: 406 IMDSLCKEGRVL-EAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSI 464

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD +TY +++ G+C  GR++DA  L++ M       N + Y+ +L G+   G +  A
Sbjct: 465 GLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAA 524

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E   ++   G     N  TY  V+   C    + EAL +   + +        T + +I
Sbjct: 525 REFYMKIVDSGIQLGIN--TYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMI 582

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G    G + +A  L   ++  G V     Y  ++   +    L+E+++LF  M  +G  
Sbjct: 583 VGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCT 642

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG-FLSSVDSDIHSV 418
            +    + ++R+L   G          D+ + G +L+ +D   +SV
Sbjct: 643 ANSRTLNAIVRKLLEKG----------DVRRAGTYLTKIDEKEYSV 678



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 3/156 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+  LCE +   +EA+ + + +   + + +   +N +I    + G +  A  L   +   
Sbjct: 546 VLGGLCENS-FVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPS 604

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD I Y  MI+     G LE++  LF  M+++GC AN    +A++  +   G + RA
Sbjct: 605 GLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRA 664

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              L +++++  + S    T   +I I   +   KE
Sbjct: 665 GTYLTKIDEK--EYSVEASTAVLLISIVSERKYQKE 698


>gi|357146655|ref|XP_003574066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Brachypodium distachyon]
          Length = 795

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 160/334 (47%), Gaps = 5/334 (1%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
            S+  + ++  LC+K  L  EA W L  +       D ++YN VI  + + GD+  A  L
Sbjct: 448 TSLNHLSILVGLCKKGLLV-EARWYLENVAVKYQPGDVVLYNVVIDGYAKIGDISNAVGL 506

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
              + +  ++P I+T  S++ G+C  G L+ A   F+ ++       +V Y+ L+D +  
Sbjct: 507 YDQIVIAGMFPTIVTCNSILYGYCKCGDLQAAESYFRAIQISSLLPTMVTYTTLMDALSE 566

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G +   L +L EM ++G    PN +TY+ VI+  C +    +A+  LD M   G   + 
Sbjct: 567 AGKVNTMLSILYEMVEKG--IKPNAITYSVVIKGLCKELRFHDAIHFLDNMHGEGVNADP 624

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT +TLI+GFC   ++  A+ + D++V  G V +   Y+ L+  L    ++ +AE L   
Sbjct: 625 VTYNTLIQGFCEVQDIQMAFHIHDRMVYCGIVPTPVTYNFLINVLCLKGQVIQAEYLLES 684

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +   G++    A + +I+  C  G   E   L+  +   GF ++V     S  +  LC++
Sbjct: 685 LRERGIELRKFAYTTLIKAECAKGMPYEAISLFGKLLDDGFETTVKD--FSAAINRLCKR 742

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
             + EA     FML   ++        +V  L+K
Sbjct: 743 KFAKEAVMFIPFMLSAGVFPDTQVYYVLVRALQK 776



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 127/274 (46%), Gaps = 4/274 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P ++ + +++   C+KG ++ A   ++ + +     D++ Y  +I G+   G + +A GL
Sbjct: 447 PTSLNHLSILVGLCKKGLLVEARWYLENVAVKYQPGDVVLYNVVIDGYAKIGDISNAVGL 506

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           +  +   G    +V  +++L G C+ G ++ A      ++       P +VTYT+++   
Sbjct: 507 YDQIVIAGMFPTIVTCNSILYGYCKCGDLQAAESYFRAIQI--SSLLPTMVTYTTLMDAL 564

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
              G +   L IL  M   G  PN +T S +IKG C E    +A   +D +   G  +  
Sbjct: 565 SEAGKVNTMLSILYEMVEKGIKPNAITYSVVIKGLCKELRFHDAIHFLDNMHGEGVNADP 624

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y++L+      + ++ A  +  +M+  G+ P  +  + +I  LCL GQV++   L E 
Sbjct: 625 VTYNTLIQGFCEVQDIQMAFHIHDRMVYCGIVPTPVTYNFLINVLCLKGQVIQAEYLLES 684

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           + + G    +    ++ L+   C K    EA  L
Sbjct: 685 LRERGI--ELRKFAYTTLIKAECAKGMPYEAISL 716



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 127/264 (48%), Gaps = 12/264 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K    +EA+ +  ++ E  ++ +T+ YN++I  +   G      ++++ M   
Sbjct: 279 LIHGLC-KIGFLDEAVDLFERVTEEGMKLETVTYNSLINGYRLLGLTREVPKIIQFMRYQ 337

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PDI+TY  +I G C +G +E+   +   +   G   N+V YS LL+ + + G +  A
Sbjct: 338 GIEPDIVTYTILIAGHCESGDVEEGMKIRNDILDQGLQLNIVTYSVLLNALFKKGLVHEA 397

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL- 312
             LLGE+   G D   +++ Y+ +I  +C  G ++ AL + D M    C   +V  ++L 
Sbjct: 398 ENLLGEIHSIGLDM--DIIAYSILIHGYCKLGEIERALEVCDVM----CCSQKVVPTSLN 451

Query: 313 ----IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
               + G C +G L EA   ++ V           Y+ ++    +   +  A  L+ +++
Sbjct: 452 HLSILVGLCKKGLLVEARWYLENVAVKYQPGDVVLYNVVIDGYAKIGDISNAVGLYDQIV 511

Query: 369 ASGVKPDGLACSVMIRELCLGGQV 392
            +G+ P  + C+ ++   C  G +
Sbjct: 512 IAGMFPTIVTCNSILYGYCKCGDL 535



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 125/272 (45%), Gaps = 5/272 (1%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M ++ L PD   Y+ +I   C+ G +  A +L + +    +  + +TY S+I G+   G 
Sbjct: 264 MLKYGLNPDRYTYSTLIHGLCKIGFLDEAVDLFERVTEEGMKLETVTYNSLINGYRLLGL 323

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
             +   + + M+  G   ++V Y+ L+ G C  G +E  +++  ++  +G     N+VTY
Sbjct: 324 TREVPKIIQFMRYQGIEPDIVTYTILIAGHCESGDVEEGMKIRNDILDQG--LQLNIVTY 381

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
           + ++     KG++ EA  +L  + ++G   + +  S LI G+C  G ++ A ++ D +  
Sbjct: 382 SVLLNALFKKGLVHEAENLLGEIHSIGLDMDIIAYSILIHGYCKLGEIERALEVCDVMCC 441

Query: 335 GGSVSSGGC-YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
              V      + S++V L +   L EA      +       D +  +V+I      G + 
Sbjct: 442 SQKVVPTSLNHLSILVGLCKKGLLVEARWYLENVAVKYQPGDVVLYNVVIDGYAKIGDIS 501

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
               LY+ I   G   ++ +   + +L G C+
Sbjct: 502 NAVGLYDQIVIAGMFPTIVT--CNSILYGYCK 531



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 2/227 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N  + +L +M E  ++P+ I Y+ VI+  C++     A   +  M    +  D +TY ++
Sbjct: 571 NTMLSILYEMVEKGIKPNAITYSVVIKGLCKELRFHDAIHFLDNMHGEGVNADPVTYNTL 630

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I+GFC    ++ A  +   M   G     V Y+ L++ +C  G + +A  LL  + + G 
Sbjct: 631 IQGFCEVQDIQMAFHIHDRMVYCGIVPTPVTYNFLINVLCLKGQVIQAEYLLESLRERGI 690

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +       YT++I+  C KGM  EA+ +  ++   G        S  I   C      EA
Sbjct: 691 ELRK--FAYTTLIKAECAKGMPYEAISLFGKLLDDGFETTVKDFSAAINRLCKRKFAKEA 748

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
              I  +++ G       Y  LV  L + K L     L +  + +G+
Sbjct: 749 VMFIPFMLSAGVFPDTQVYYVLVRALQKRKELFYLPLLHALAVKTGI 795


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 155/295 (52%), Gaps = 5/295 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A+ +  +M E  L+P   IY  ++ ++ + G +  A  L+  M +    P + TY  +
Sbjct: 248 DSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTEL 307

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I+G   +GR+EDA G++K M + GC  ++V  + L++ + R   ++ A+EL  EM     
Sbjct: 308 IRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLL-- 365

Query: 266 DCSPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
           +C+PNVVTY ++I+ +F  K    EA   L+RM+  G  P+  T S LI GFC    +++
Sbjct: 366 NCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEK 425

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  L++++   G       Y SL+  L + KR + A +LF ++  +         +VMI+
Sbjct: 426 ALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIK 485

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
                G+  E   L+ +++K+G +  V +  ++ L+ G+ R +   EA  L R M
Sbjct: 486 HFGKCGRFNEAMGLFNEMKKLGCIPDVYA--YNALITGMVRADMMDEAFSLFRTM 538



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 173/383 (45%), Gaps = 16/383 (4%)

Query: 33  ERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSY 90
           ERF   L+  K   + EK L  +K KLD   V EVL      +  + I+FF WA  + ++
Sbjct: 64  ERFIRILKIFKWGPDAEKALEVLKLKLDIRLVREVLK--IDVEVHVKIQFFKWAGKKRNF 121

Query: 91  RHSSFMYN---RACEMSR-IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
            H S  Y    R  + +R + +    I D+V++     C +    +  I  +  + ++ N
Sbjct: 122 EHDSTTYMALIRCLDENRLVGELWRTIQDMVKS----PCAIGPSELSEIVKILGRVKMVN 177

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM-GLIDLYPDIITYVSM 205
           +A+ +  ++     RP    YN+VI +  ++G      EL   M      +PD +TY ++
Sbjct: 178 KALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSAL 237

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  F    R + A  LF  MK +G       Y+ L+    +LG +E AL L+ EM     
Sbjct: 238 ISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMR-- 295

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
            C P V TYT +I+     G +++A G+   M   GC P+ V ++ LI        L EA
Sbjct: 296 RCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEA 355

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKR-LKEAEKLFSKMLASGVKPDGLACSVMIR 384
            +L +++       +   Y++++  L   K    EA     +M   GV P     S++I 
Sbjct: 356 VELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILID 415

Query: 385 ELCLGGQVLEGFCLYEDIEKIGF 407
             C   +V +   L E++++ GF
Sbjct: 416 GFCKTNRVEKALLLLEEMDEKGF 438



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 6/297 (2%)

Query: 115 DVVEAYK---EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           D    YK   ++GC   V +M  + N+  ++    EA+ +  +M   +  P+ + YN +I
Sbjct: 319 DAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTII 378

Query: 172 R-LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           + LF +K     A   ++ M    + P   TY  +I GFC   R+E A  L + M   G 
Sbjct: 379 KSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGF 438

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
                AY +L++ + +    E A EL  E+++  G  S +V  Y  +I+ F   G   EA
Sbjct: 439 PPCPAAYCSLINSLGKAKRYEAANELFQELKENCG--SSSVRVYAVMIKHFGKCGRFNEA 496

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           +G+ + M+ LGC P+    + LI G      +DEA+ L   +   G       ++ ++  
Sbjct: 497 MGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNG 556

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           L RT   K A ++F+KM +S +KPD ++ + ++  L   G   E   L +++   GF
Sbjct: 557 LARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGF 613



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 58/127 (45%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K+ GC+  V     +     +A + +EA  + R M E    PD   +N ++      G  
Sbjct: 504 KKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGP 563

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A E+   M    + PD ++Y +++     AG  E+A  L K M   G   +L+ YS++
Sbjct: 564 KRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSI 623

Query: 241 LDGICRL 247
           L+ + ++
Sbjct: 624 LEAVGKV 630


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 158/326 (48%), Gaps = 50/326 (15%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A  +LR M E ++ PD + ++ +I  F ++G +  A+EL + M   +++P  ITY SM
Sbjct: 132 SDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSM 191

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR-----------LGSMERAL 254
           I GFC   RLEDA  +F +M   GC+ +++  + L+DG CR           +G++  A 
Sbjct: 192 IDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQ 251

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           +L  EM   G   SP++VT  +++   C  G +++AL +    +      +  T + +I 
Sbjct: 252 DLFQEMISNG--VSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIIN 309

Query: 315 GFCVEGNLDEAYQLID-----------------------------------KVVAGGSVS 339
           G C    +DEA+ L +                                   +++  G + 
Sbjct: 310 GMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIP 369

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           S   Y+S+V    +  RL+EA ++   M++ G  PD +  S +I+  C  G+V +G  L+
Sbjct: 370 STVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELF 429

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCR 425
            ++ + G ++  D+  ++ L+ G C+
Sbjct: 430 SEMCQRGLVA--DTITYNALIHGFCK 453



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 173/358 (48%), Gaps = 24/358 (6%)

Query: 64  EVLHR-CFPSQ---SQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
           E+L R  FP+    S M   F   + L+ +      M ++ C    I  N  I       
Sbjct: 175 EMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLI------- 227

Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
              +GC  + +   +I   C+   + N A  + ++M    + PD +  N ++   CE G 
Sbjct: 228 ---DGCCRAKR--HLIHGFCQVGNV-NVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGK 281

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           +  A E+ K      +  D  T   +I G C   ++++A  LF  +  +G   ++V Y+ 
Sbjct: 282 LEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNI 341

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+    + G+  RA ++  EM  +G    P+ VTY S++  FC +  ++EA  ++D M +
Sbjct: 342 LIGVFVKEGNFLRAEDIYLEMLCKG--IIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVS 399

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            GC+P+ VT STLIKG+C  G +D+  +L  ++   G V+    Y++L+    +   L  
Sbjct: 400 EGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNG 459

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
           A+ +F +M++SGV PD +    M+  LC   ++ +G  + ED++K     SVD ++  
Sbjct: 460 AQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQK-----SVDHELED 512



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 183/362 (50%), Gaps = 23/362 (6%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           + N  C   R+ Q  +++  +VE   +     +V    ++  +C+     + A+ +LRKM
Sbjct: 16  LMNGLCREGRVLQALALVDRMVEEGHQPD---AVTYGTIVNGMCKLGDTVS-ALNMLRKM 71

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            E  ++ + +IY+ ++   C+ G+ I A  +   M    ++P+++TY  MI G+C+ G+ 
Sbjct: 72  DESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKW 131

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
            DA  L + M       ++V +SAL++   + G +  A EL  EM +   +  P  +TY+
Sbjct: 132 SDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRR--NIFPTTITYS 189

Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK-----------GFCVEGNLDE 324
           S+I  FC    +++A  + D M + GC+P+ +T++TLI            GFC  GN++ 
Sbjct: 190 SMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNV 249

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A  L  ++++ G        ++L+  L    +L++A ++F     S +  D   C+++I 
Sbjct: 250 AQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIIN 309

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +C G +V E + L+  +     ++ V++D+  +++L+    ++ + + A  +   ML K
Sbjct: 310 GMCKGNKVDEAWDLFNSLP----VNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCK 365

Query: 443 RI 444
            I
Sbjct: 366 GI 367



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 161/326 (49%), Gaps = 17/326 (5%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E GC  +V     + N LC + R+  +A+ ++ +M E   +PD + Y  ++   C+ GD 
Sbjct: 3   ETGCPANVVTFTTLMNGLCREGRVL-QALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDT 61

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
           ++A  +++ M    +  +++ Y +++   C  G    A  +F  M   G   N++ Y+ +
Sbjct: 62  VSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCM 121

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +DG C  G    A +LL +M +   D  P+VVT++++I  F  +G +  A  +   M   
Sbjct: 122 IDGYCSYGKWSDAEQLLRDMIERNID--PDVVTFSALINAFVKEGKVSGAEELYREMLRR 179

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR---- 356
              P  +T S++I GFC    L++A  + D +V+ G        ++L+    R KR    
Sbjct: 180 NIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIH 239

Query: 357 -------LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409
                  +  A+ LF +M+++GV PD + C+ ++  LC  G++ +   +++  +K     
Sbjct: 240 GFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKM-- 297

Query: 410 SVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +D+   ++++ G+C+ N   EA  L
Sbjct: 298 DLDTATCNIIINGMCKGNKVDEAWDL 323



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 156/333 (46%), Gaps = 15/333 (4%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E     + + +  ++   C +G ++ A  L+  M      PD +TY +++ G C  G 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
              A  + + M      AN+V YSA++D +C+ G+  +A  +  EM ++G    PNV+TY
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKG--IFPNVLTY 118

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +I  +C  G   +A  +L  M      P+ VT S LI  F  EG +  A +L  +++ 
Sbjct: 119 NCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLR 178

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-VL 393
                +   YSS++    +  RL++A+ +F  M++ G  PD +  + +I   C   + ++
Sbjct: 179 RNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLI 238

Query: 394 EGFC------LYEDIEKIGFLSSVDSDIHS--VLLLGLCRKNHSVEAAKLARFMLKKRIW 445
            GFC      + +D+ +    + V  DI +   LL GLC      +A ++ +   K ++ 
Sbjct: 239 HGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMD 298

Query: 446 LQGPYVDKIVEHLKKSG--DE--ELITNLPKIG 474
           L     + I+  + K    DE  +L  +LP  G
Sbjct: 299 LDTATCNIIINGMCKGNKVDEAWDLFNSLPVNG 331


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 134/253 (52%), Gaps = 8/253 (3%)

Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
           ++  G    + +   + +   K+R A +A  ++R + E    PD + YN +   +C   D
Sbjct: 167 HRSHGVAQDLPLFNSLLDALVKSRHAGKAASLVRAL-ERRFPPDAVTYNTLADGWCRVKD 225

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-----CAANL 234
              A ++++ M    + P   TY  ++KGF  +G+L+ A   F  MK+ G     C  ++
Sbjct: 226 TSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDV 285

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           V+Y+ +L G+   G +++A ++  EM +EG  C+P++ TY ++IQ+ C KG +++A+ + 
Sbjct: 286 VSYTTVLHGLGVAGQLDKARKVFDEMSREG--CTPSIATYNALIQVTCKKGNVEDAVAVF 343

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
           D M   G  PN VT + LI+G C  G +D A +L+DK+   G   +   Y+ L+  L   
Sbjct: 344 DDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEE 403

Query: 355 KRLKEAEKLFSKM 367
             +++A  LF  M
Sbjct: 404 GDIEKALHLFETM 416



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 139/280 (49%), Gaps = 7/280 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           PD +TY ++  G+C       A  + + M   G A     Y+ +L G  R G ++ A + 
Sbjct: 208 PDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDF 267

Query: 257 LGEMEKEGGD---CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +M+K G +   C P+VV+YT+V+      G + +A  + D M   GC P+  T + LI
Sbjct: 268 FLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALI 327

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           +  C +GN+++A  + D ++  G + +   Y+ L+  L    ++  A KL  KM   G +
Sbjct: 328 QVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCE 387

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    +V+I  L   G + +   L+E + K G     + D +++++  +  +  + + A
Sbjct: 388 PNVQTYNVLIGYLFEEGDIEKALHLFETMSK-GEECLPNQDTYNIIISAMFVRKRAEDMA 446

Query: 434 KLARFMLK--KRIWLQGPYV-DKIVEHLKKSGDEELITNL 470
             AR +++   R +L   ++ ++++  L  +G++EL   L
Sbjct: 447 VAARMVVEMVDRGYLPRRFMFNRVLNGLMLTGNQELSREL 486



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 4/211 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +E C   V     + +    A   ++A  V  +M      P    YN +I++ C+KG++ 
Sbjct: 278 DENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVE 337

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  +   M      P+++TY  +I+G C+AG+++ A  L   MKR GC  N+  Y+ L+
Sbjct: 338 DAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLI 397

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ-IFCGKGM--MKEALGILDRME 298
             +   G +E+AL L   M K G +C PN  TY  +I  +F  K    M  A  ++  M 
Sbjct: 398 GYLFEEGDIEKALHLFETMSK-GEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMV 456

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
             G  P R   + ++ G  + GN + + +L+
Sbjct: 457 DRGYLPRRFMFNRVLNGLMLTGNQELSRELL 487


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 154/311 (49%), Gaps = 5/311 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI+  C + +   +A+  L  M +++  PD + YN ++   C+KG +  A +L+  M   
Sbjct: 214 VIYGYCLENKFK-DAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSR 272

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+  TY  ++ G+C  G L++A  + ++M ++    ++  Y+ L++G+C  G +E A
Sbjct: 273 GLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEA 332

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  EM  E     P+VV+Y ++I        + EA  +L+ M   G  PN VT + ++
Sbjct: 333 FKLRDEM--ENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMV 390

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           K +C EG +D+A   I K+   G       Y++L+    +   + EA +   +M    +K
Sbjct: 391 KWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMK 450

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            D +  + ++R LC   ++ E + L     K G+   +D   +  L++G  +  +   A 
Sbjct: 451 MDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYF--IDEVSYGTLIVGYFKDGNVDRAL 508

Query: 434 KLARFMLKKRI 444
           KL   M +K I
Sbjct: 509 KLWDEMKEKEI 519



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 168/334 (50%), Gaps = 12/334 (3%)

Query: 116 VVEAYK--EEGCVVSVKMMKVIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           + EA+K  EE     VK   V  N+     C++ ++ ++A   + KM E    PD + YN
Sbjct: 364 ISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKM-DDASNTITKMEESGFSPDCVTYN 422

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I  +C+ G+M  A   M  MG  ++  D +T  ++++  C   +LE+A  L    ++ 
Sbjct: 423 TLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKR 482

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   + V+Y  L+ G  + G+++RAL+L  EM+++  +  P+ VTY  +I   C  G  +
Sbjct: 483 GYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEK--EIIPSTVTYNCIIGGLCQCGKTE 540

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A+  L+ +   G  P+  T +T++ G+C EG++++A+Q  +K+V           + L+
Sbjct: 541 QAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILL 600

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L     L++A KLF+  ++ G   D +  + +I  LC  G++ + F L  ++E+    
Sbjct: 601 RGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKEL- 659

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              D   ++ ++  L       EA +    ML+K
Sbjct: 660 -GPDHYTYNAIITALTDSGRIREAEEFMSKMLEK 692



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 142/293 (48%), Gaps = 9/293 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+   +N VI  +C +     A E +  MG  +  PD +TY +++   C  GRL DA  L
Sbjct: 206 PNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDL 265

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              MK  G   N   Y+ L+ G C++G ++ A  ++  M +   +  P+V TY  +I   
Sbjct: 266 LMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQ--NNLLPDVWTYNMLINGL 323

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C +G ++EA  + D ME L   P+ V+ +TLI G      + EA++L++++   G   + 
Sbjct: 324 CNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNA 383

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             ++ +V    +  ++ +A    +KM  SG  PD +  + +I   C  G + E F   ++
Sbjct: 384 VTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDE 443

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454
           + +      +DS   + +L  LCR+    EA KL     K+     G ++D++
Sbjct: 444 MGRKNM--KMDSVTLNTILRTLCREKKLEEAYKLLSSARKR-----GYFIDEV 489



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 181/398 (45%), Gaps = 45/398 (11%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+M  +K+      +V+E   +   +  V    ++ N LC + R+  EA  +  +M    
Sbjct: 289 CKMGWLKE----AANVIELMTQNNLLPDVWTYNMLINGLCNEGRIE-EAFKLRDEMENLK 343

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L PD + YN +I    E   +  A +L++ M    + P+ +T+  M+K +C  G+++DA 
Sbjct: 344 LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDAS 403

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
                M+  G + + V Y+ L++G C+ G+M  A   + EM ++  +   + VT  ++++
Sbjct: 404 NTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRK--NMKMDSVTLNTILR 461

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV------- 332
             C +  ++EA  +L      G   + V+  TLI G+  +GN+D A +L D++       
Sbjct: 462 TLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIP 521

Query: 333 -------VAGGSVSSG---------------------GCYSSLVVELVRTKRLKEAEKLF 364
                  + GG    G                       Y++++    R   +++A +  
Sbjct: 522 STVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFH 581

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           +KM+ +  KPD   C++++R LC+ G + +   L+      G   ++D+  ++ L+  LC
Sbjct: 582 NKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKG--KAIDTVTYNTLITSLC 639

Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           ++    +A  L   M +K +       + I+  L  SG
Sbjct: 640 KEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSG 677



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 110/242 (45%), Gaps = 15/242 (6%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +   +A+  L ++ E  L PD   YN ++  +C +GD+  A +    M   
Sbjct: 529 IIGGLCQCGK-TEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVEN 587

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ T   +++G C  G LE A  LF      G A + V Y+ L+  +C+ G ++ A
Sbjct: 588 SFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDA 647

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL EME++  +  P+  TY ++I      G ++EA   + +M   G  P +V      
Sbjct: 648 FNLLSEMEEK--ELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVL----- 700

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
                   LD    ++    +  S SS   YS  + EL    + K+A ++F +    G+ 
Sbjct: 701 -------QLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGIT 753

Query: 374 PD 375
            D
Sbjct: 754 VD 755



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 7/244 (2%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER---ALELLGEM 260
           + I  +  +G+   A  +FK MKR     NL+  + LL+ + R  S      + E   + 
Sbjct: 140 TAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDA 199

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            K G    PNV T+  VI  +C +   K+A+  L+ M    C+P+ VT +T++   C +G
Sbjct: 200 IKLG--IVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKG 257

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            L +A  L+  + + G + +   Y+ LV    +   LKEA  +   M  + + PD    +
Sbjct: 258 RLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYN 317

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           ++I  LC  G++ E F L +++E +  L  V S  ++ L+ G    +   EA KL   M 
Sbjct: 318 MLINGLCNEGRIEEAFKLRDEMENLKLLPDVVS--YNTLINGCLEWSKISEAFKLLEEMS 375

Query: 441 KKRI 444
           +K +
Sbjct: 376 EKGV 379



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 21/184 (11%)

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           KM E   +PD    N ++R  C +G +  A +L           D +TY ++I   C  G
Sbjct: 583 KMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEG 642

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG-------- 265
           RL+DA  L   M+      +   Y+A++  +   G +  A E + +M ++G         
Sbjct: 643 RLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQL 702

Query: 266 DCSPNVV-------------TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           D +  VV              Y+  I+  C +G  K+A+ I    +  G   ++ T   L
Sbjct: 703 DXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINL 762

Query: 313 IKGF 316
           + G 
Sbjct: 763 MDGL 766



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 24/144 (16%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           + +V    +I +LC++ RL ++A  +L +M E +L PD   YN +I    + G +  A+E
Sbjct: 626 IDTVTYNTLITSLCKEGRL-DDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEE 684

Query: 186 LMKGMGLIDLYPD-----------------------IITYVSMIKGFCNAGRLEDACGLF 222
            M  M      P                         + Y   IK  C  G+ +DA  +F
Sbjct: 685 FMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIF 744

Query: 223 KVMKRHGCAANLVAYSALLDGICR 246
              K+ G   +   Y  L+DG+ +
Sbjct: 745 GESKQKGITVDKSTYINLMDGLIK 768


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 163/314 (51%), Gaps = 8/314 (2%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P+   Y+ +I+  C  G      +L++ M ++   PD++ Y +++   C    + +A  
Sbjct: 193 KPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVH 252

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +F  MK  G    +V Y++L+ G+  LG  + A  LL EM+  GG+  P++V ++ +I I
Sbjct: 253 IFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMK--GGNIMPDLVAFSVLIDI 310

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C +G + EA  IL  M  +G  P+  T +TL+ G+C+   + EA ++ + +++ G +  
Sbjct: 311 MCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPD 370

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              +S LV    + KR+ EA++LF +M   G+ PD ++ + +I  LC   + LE   L++
Sbjct: 371 VFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFK 430

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM----LKKRIWLQGPYVDKIVE 456
           D+   G+  ++ +  +S+LL  L ++ +  +A  L R M    LK  +      +D + +
Sbjct: 431 DMHSNGYPPNLVT--YSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCK 488

Query: 457 HLKKSGDEELITNL 470
           + K     EL   L
Sbjct: 489 YGKFKDARELFAEL 502



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 133/258 (51%), Gaps = 2/258 (0%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +L +M   ++ PD + ++ +I + C++G++  A  ++K M  + + PD+ TY +++
Sbjct: 284 EAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLM 343

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+C    + +A  +F+VM   G   ++ ++S L++G C+   ++ A +L  EM   G  
Sbjct: 344 NGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRG-- 401

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+ V+Y ++I   C      EA  +   M + G  PN VT S L+     +G LD+A 
Sbjct: 402 LIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAM 461

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
            L   +   G       Y+ ++  + +  + K+A +LF+++   G++P+   C+  I  +
Sbjct: 462 GLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGV 521

Query: 387 CLGGQVLEGFCLYEDIEK 404
           C GG + E    +  +EK
Sbjct: 522 CKGGLLDEAHKAFRQMEK 539



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 143/302 (47%), Gaps = 8/302 (2%)

Query: 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202
           R  N+A+     M   +  P  + +  +               L K M +  +  D+++ 
Sbjct: 70  RNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSL 129

Query: 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
             +I  FC    ++    +   + + G   N++ +S L++G C  G + RA+EL   M  
Sbjct: 130 TILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVA 189

Query: 263 EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322
            G    PNV +Y+ +I+  C  G   E + +L+ M+ +GC P+ V  +T++   C +  +
Sbjct: 190 RG--YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLV 247

Query: 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           +EA  +  K+   G + +   Y+SL+  L    R KEA  L ++M    + PD +A SV+
Sbjct: 248 NEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVL 307

Query: 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFML 440
           I  +C  G+V E   + + + ++G    V+ D+  ++ L+ G C +   VEA K+   M+
Sbjct: 308 IDIMCKEGEVSEARVILKTMTEMG----VEPDVATYNTLMNGYCLRMEVVEARKVFEVMI 363

Query: 441 KK 442
            K
Sbjct: 364 SK 365



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 153/346 (44%), Gaps = 46/346 (13%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL---MKGM 190
           +I  LC   +   E + +L  M      PD +IYN ++   C+   +  A  +   MKG 
Sbjct: 202 IIKGLCRVGK-TTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGT 260

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
           G++   P ++TY S+I G  N GR ++A GL   MK      +LVA+S L+D +C+ G +
Sbjct: 261 GIL---PTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEV 317

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFC----------------GKGMM------- 287
             A  +L  M + G    P+V TY +++  +C                 KG M       
Sbjct: 318 SEARVILKTMTEMG--VEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFS 375

Query: 288 ------------KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335
                        EA  + D M   G  P+ V+ +TLI G C      EA +L   + + 
Sbjct: 376 ILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSN 435

Query: 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           G   +   YS L+  L +   L +A  LF  M  SG+KPD +  ++MI  +C  G+  + 
Sbjct: 436 GYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDA 495

Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
             L+ ++   G     ++ + +  + G+C+     EA K  R M K
Sbjct: 496 RELFAELSVKGL--QPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEK 539



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 8/197 (4%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCE------KARLANEAMWVLRKMPEFDLRPDTIIY 167
           ++VVEA K    ++S   M  +F+         KA+  +EA  +  +M    L PDT+ Y
Sbjct: 350 MEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSY 409

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N +I   C+    + A+EL K M      P+++TY  ++      G L+ A GLF+ M+ 
Sbjct: 410 NTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMEN 469

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G   +LV Y+ ++DG+C+ G  + A EL  E+  +G    PN    T  I   C  G++
Sbjct: 470 SGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKG--LQPNNWVCTPTIDGVCKGGLL 527

Query: 288 KEALGILDRMEALGCAP 304
            EA     +ME   C+P
Sbjct: 528 DEAHKAFRQMEKDDCSP 544



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 2/197 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  V   M      PD   ++ ++  +C+   +  A +L   M    L PD ++Y ++I
Sbjct: 354 EARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLI 413

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C A R  +A  LFK M  +G   NLV YS LLD + + G +++A+ L   ME  G  
Sbjct: 414 SGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSG-- 471

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P++VTY  +I   C  G  K+A  +   +   G  PN    +  I G C  G LDEA+
Sbjct: 472 LKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAH 531

Query: 327 QLIDKVVAGGSVSSGGC 343
           +   ++       + GC
Sbjct: 532 KAFRQMEKDDCSPAQGC 548


>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial [Vitis vinifera]
 gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
          Length = 454

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 184/408 (45%), Gaps = 48/408 (11%)

Query: 5   SLSRILSSSVNIKNSKIFAL-HFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVI 63
           +++  L +++  K    FA+ H  +A     FY         +E+TL  +   + S  V 
Sbjct: 30  TITTHLQNTITSKKDDYFAVVHHISAIVRRDFY---------LERTLNKLPISVTSDLVY 80

Query: 64  EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQ-------------- 108
            VL  C P+     +RFF WA    SY+ ++  Y    + ++R KQ              
Sbjct: 81  RVLRSC-PNSGTESLRFFNWARSHLSYQPTTLEYEELLKTLARTKQFQPMWKIAHQMQTL 139

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI-IY 167
           +P+++  ++E + + G                   L ++A+ V  K       P TI +Y
Sbjct: 140 SPTVVSSIIEEFGKHG-------------------LVDQAVEVFNKAKSALNCPQTIEVY 180

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           N+++   CE      A  L++ M    + P+  TY  ++ G+C AG++++A    + M R
Sbjct: 181 NSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEMSR 240

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G    +     L+DG+   G +E A E++ +M KEG  C+P+V T  S+++  C  G  
Sbjct: 241 KGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEG--CAPDVETLNSMLEAICKAGEA 298

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           +  + I + +  LG +PN  T   +I   C EG +DEA++++ + +  G       Y+ +
Sbjct: 299 EFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPI 358

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
           +  L R  +  +A   FS M   G  P+    +++I     GG+ ++ 
Sbjct: 359 IKALCRNGQFDDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDA 406


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 193/401 (48%), Gaps = 21/401 (5%)

Query: 76  MGIRFFIWAALQSSYRHSSFMYNRACEM----SRIKQNPSIIIDVVEAYKEEGCV----- 126
           + +RFF WA  Q+ ++ S   Y+   ++      ++    ++  VV    E G +     
Sbjct: 63  VALRFFRWAERQTGFKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSS 122

Query: 127 --VSVKMMKVIFNLC----EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
             VS+  +K+I +L      K  L  + + V  KM    L PD    N V+RL  ++ + 
Sbjct: 123 SEVSMPSVKLILDLLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNN 182

Query: 181 I-AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           I  A E+   M    + P ++TY +M+  FC  G +++A  L   M+  GC+ N V Y+ 
Sbjct: 183 IDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNV 242

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L++G+   G ME+A EL+ +M + G + S  V TY  +I+ +C KG ++EA  + + M +
Sbjct: 243 LVNGLSHSGEMEQAKELIQDMLRLGLEVS--VYTYDPLIRGYCEKGQIEEASRLGEEMLS 300

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            G  P  VT +T++ G C  G + +A +L+D +V    +     Y++L+    R   + E
Sbjct: 301 RGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGE 360

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A  LF+++    + P  +  + +I  LC  G +     L +++ K G     D    +  
Sbjct: 361 AFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHG--PDPDVFTFTTF 418

Query: 420 LLGLCRKNHSVEAAKLARFMLKKRIWL-QGPYVDKIVEHLK 459
           + G C+  +   A +L   ML + +   +  Y+ +IV  LK
Sbjct: 419 VRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELK 459



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 193/419 (46%), Gaps = 62/419 (14%)

Query: 49  TLATVKAKLDSTC----VIEVLHRCFPSQSQMGI--RFFIWAALQSSYRHSSFMYNRACE 102
           T+ T    LDS C    V E L   F  Q+ MG       +  L +   HS        E
Sbjct: 201 TVVTYNTMLDSFCKKGMVQEALQLLFQMQA-MGCSPNDVTYNVLVNGLSHSG-------E 252

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLR 161
           M + K+   +I D++      G  VSV     +I   CEK ++  EA  +  +M      
Sbjct: 253 MEQAKE---LIQDMLRL----GLEVSVYTYDPLIRGYCEKGQI-EEASRLGEEMLSRGAV 304

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P  + YN ++   C+ G +  A +L+  M   +L PD+++Y ++I G+   G + +A  L
Sbjct: 305 PTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLL 364

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F  ++    A ++V Y+ L+DG+CRLG ++ A+ L  EM K G D  P+V T+T+ ++ F
Sbjct: 365 FAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPD--PDVFTFTTFVRGF 422

Query: 282 CGKG---MMKE--------------------------------ALGILDRMEALGCAPNR 306
           C  G   M KE                                A G+ + M A G  P+ 
Sbjct: 423 CKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDL 482

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           +T +  I G    GNL EA +L+ K++  G V     Y+S++   +    L++A  LF +
Sbjct: 483 ITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLE 542

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
           ML+ G+ P  +  +V+I    + G++      + ++ + G   +V +  ++ L+ GLC+
Sbjct: 543 MLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVIT--YNALINGLCK 599



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 176/349 (50%), Gaps = 15/349 (4%)

Query: 98  NRACEMSRIKQNPSIIIDVV-EAYK---EEG-CVVSVKMMKVIFNLCEKARLANEAMWVL 152
           NR   + R + N    IDV  E Y    E G C   V    ++ + C+K  +  EA+ +L
Sbjct: 170 NRVLRLLRDRDNN---IDVAREVYNVMVECGICPTVVTYNTMLDSFCKKG-MVQEALQLL 225

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
            +M      P+ + YN ++      G+M  A EL++ M  + L   + TY  +I+G+C  
Sbjct: 226 FQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEK 285

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G++E+A  L + M   G    +V Y+ ++ G+C+ G +  A +LL  M  +  +  P++V
Sbjct: 286 GQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNK--NLMPDLV 343

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           +Y ++I  +   G + EA  +   +     AP+ VT +TLI G C  G+LD A +L D++
Sbjct: 344 SYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEM 403

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA-CSVMIRELCLGGQ 391
           +  G       +++ V    +   L  A++LF +ML  G++PD  A  + ++ EL LG  
Sbjct: 404 IKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDP 463

Query: 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
             + F + E++   GF    D   ++V + GL +  +  EA++L + ML
Sbjct: 464 S-KAFGMQEEMLARGF--PPDLITYNVFIDGLHKLGNLKEASELVKKML 509



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 168/373 (45%), Gaps = 36/373 (9%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +++ LC+  R++ +A  +L  M   +L PD + YN +I  +   G++  A  L   +   
Sbjct: 313 IMYGLCKWGRVS-DARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYR 371

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P ++TY ++I G C  G L+ A  L   M +HG   ++  ++  + G C++G++  A
Sbjct: 372 SLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMA 431

Query: 254 LELLGEMEKEG------------------GDCS---------------PNVVTYTSVIQI 280
            EL  EM   G                  GD S               P+++TY   I  
Sbjct: 432 KELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDG 491

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
               G +KEA  ++ +M   G  P+ VT +++I    + G+L +A  L  ++++ G   S
Sbjct: 492 LHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPS 551

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ L+       RLK A   F +M   GV P+ +  + +I  LC   ++ + +  + 
Sbjct: 552 VVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFA 611

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
           +++  G   S +   +++L+   C   H  EA +L + ML + I         +++HL K
Sbjct: 612 EMQAKGI--SPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNK 669

Query: 461 SGDEELITNLPKI 473
                ++ +L  +
Sbjct: 670 DYKLHVVRHLENV 682



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 13/195 (6%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +++KM    L PD + Y ++I      G +  A  L   M    ++P ++TY  +I
Sbjct: 500 EASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLI 559

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
             +   GRL+ A   F  M   G   N++ Y+AL++G+C++  M++A     EM+ +G  
Sbjct: 560 HSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKG-- 617

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
            SPN  TYT +I   C  G  +EAL +   M      P+  T  +L+K      +L++ Y
Sbjct: 618 ISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLK------HLNKDY 671

Query: 327 QL-----IDKVVAGG 336
           +L     ++ V+A G
Sbjct: 672 KLHVVRHLENVIAAG 686


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 163/324 (50%), Gaps = 17/324 (5%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C  +  +M  + +LC   + A  A+ +LR+MP    RP+ + YN VI  FC +G + AA 
Sbjct: 482 CTTTFNIM--LRHLCSAGKPA-RALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAAL 534

Query: 185 ELMKGM---GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSAL 240
           ++M+ M   G I   P+  TY ++I G+C  GR+++A  +F  M   G      V Y+AL
Sbjct: 535 DIMREMRERGGI--APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNAL 592

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G C  G ++ AL     M + G   +  V TY  ++      G   EA  +++ M   
Sbjct: 593 IGGYCDQGKLDTALLYRDRMVERG--VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 650

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G AP+  T + LI G C EGN+ +A ++ + +   G  ++   Y++L+  L +  +++E 
Sbjct: 651 GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQET 710

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           +KLF + +  G++PD +  + +I      G +   F +  ++EK     + D   ++ L+
Sbjct: 711 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI--APDDVTYNTLM 768

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
            GLC      EA KL   M ++ I
Sbjct: 769 RGLCLLGRVDEARKLIDEMTERGI 792



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 141/266 (53%), Gaps = 6/266 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARL----ANEAMWVLRKMPEFDLRPDTIIYNN 169
           +D    Y++      V M    +NL   A        EA  ++ +M    L PD   YN 
Sbjct: 602 LDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNI 661

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I   C++G++  A E+ + M    +   ++TY ++I      G++++   LF    R G
Sbjct: 662 LINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRG 721

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              +LV Y+AL++     G+++RA E++GEMEK+    +P+ VTY ++++  C  G + E
Sbjct: 722 IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK--RIAPDDVTYNTLMRGLCLLGRVDE 779

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  ++D M   G  P+ VT +TLI G+ ++G++ +A ++ ++++  G   +   Y++L+ 
Sbjct: 780 ARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 839

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPD 375
            L +  +  +AE +  +M+ +G+ PD
Sbjct: 840 GLCKNGQGDDAENMVKEMVENGITPD 865



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 184/394 (46%), Gaps = 52/394 (13%)

Query: 86  LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM--KVIFNLC 139
           L+   R ++  YN      C   R++      +D++   +E G +   +     VI   C
Sbjct: 506 LRQMPRPNAVTYNTVIAGFCSRGRVQA----ALDIMREMRERGGIAPNQYTYGTVISGWC 561

Query: 140 EKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKGDM------------------ 180
           +  R+ +EA+ V  +M  + +++P+ ++YN +I  +C++G +                  
Sbjct: 562 KVGRV-DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMT 620

Query: 181 -----------------IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
                              A EL++ MG   L PD+ TY  +I G C  G ++ A  +F+
Sbjct: 621 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 680

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M R G  A +V Y+AL+  + + G ++   +L  E  + G    P++V Y ++I     
Sbjct: 681 NMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRG--IRPDLVLYNALINSHST 738

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G +  A  I+  ME    AP+ VT +TL++G C+ G +DEA +LID++   G       
Sbjct: 739 SGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVT 798

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y++L+        +K+A ++ ++M+  G  P  L  + +I+ LC  GQ  +   + +++ 
Sbjct: 799 YNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMV 858

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNH-SVEAAKLA 436
           + G   + D   +  L+ GL  ++  +++  +LA
Sbjct: 859 ENGI--TPDDSTYISLIEGLTTEDERAIDDERLA 890



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 45/255 (17%)

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  LF  M R         ++ +L  +C  G   RALELL +M +      PN VTY +V
Sbjct: 467 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR------PNAVTYNTV 520

Query: 278 IQIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           I  FC +G ++ AL I+  M E  G APN+ T  T+I G+C  G +DEA ++ D+++  G
Sbjct: 521 IAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG 580

Query: 337 SVSS---------GG---------------------------CYSSLVVELVRTKRLKEA 360
            V           GG                            Y+ LV  L    R  EA
Sbjct: 581 EVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEA 640

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +L  +M   G+ PD    +++I   C  G V +   ++E++ + G  ++V +  ++ L+
Sbjct: 641 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVT--YTALI 698

Query: 421 LGLCRKNHSVEAAKL 435
             L +K    E  KL
Sbjct: 699 YALSKKGQVQETDKL 713


>gi|413936859|gb|AFW71410.1| hypothetical protein ZEAMMB73_528560 [Zea mays]
          Length = 671

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 168/359 (46%), Gaps = 22/359 (6%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           VVEA +  G    V    +I   C   RLA +A+ ++  MP   + PDT  YN V++  C
Sbjct: 172 VVEAARASGTANVVTYTALIDGYCRSGRLA-DALRLIASMP---VAPDTYTYNTVLKGLC 227

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
                  A+ELM+ M     +P+ +T+ + I+ FC  G L+ A  L + M ++GC  +++
Sbjct: 228 CAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVI 287

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            YS L++G    G ++ AL+LL  M      C PN V Y + ++  C  G  +E   ++ 
Sbjct: 288 IYSTLVNGFSEHGRVDEALKLLNTML-----CRPNTVCYNAALKGLCIAGRWEEVGELIA 342

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M    C PN  T STLI   C    ++ A ++++++   G +     Y++++       
Sbjct: 343 EMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQA 402

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R  +A KL   ML    KPD ++ + +++ LC   +       Y+ +E +  +   D  I
Sbjct: 403 RADDALKLLKSMLC---KPDTISFNAVLKCLCKAKR------WYDAVELVAKMLKKDCRI 453

Query: 416 H----SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           +    ++L+  LC+     +A ++   M K R          ++    + G +E+  +L
Sbjct: 454 NEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDL 512



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 155/313 (49%), Gaps = 22/313 (7%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LC+  RL   A+ VL +M ++   PD + YN +I  F    D   AD+ +K +  +
Sbjct: 359 LINSLCQN-RLVEYAVEVLEQMQKYGYMPDVVSYNTIISCF---SDQARADDALKLLKSM 414

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD I++ +++K  C A R  DA  L   M +  C  N + ++ L+D +C+ G ++ A
Sbjct: 415 LCKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLCQNGQVKDA 474

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
           +E+   M K    C P++VTY+S+I  F  +G+ + A    D   ++ C  +  + +  +
Sbjct: 475 IEVFELMPKY--RCMPDIVTYSSLINGFSEQGLDEMA---FDLFRSMPCRADIFSYNATL 529

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           KG C+    D+A +LI  +V    + +   ++ L+  L +   +  A  ++ +M   G+ 
Sbjct: 530 KGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQMPKYGIT 589

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV----DSDIHSVLLLGLCRKNHS 429
           PD    + +I      G++ +          + FLS++    D+  ++ +L GLCR    
Sbjct: 590 PDIFTYNALINGYSEQGRLDDA---------LKFLSTMPCEPDTISYNSILKGLCRAERW 640

Query: 430 VEAAKLARFMLKK 442
            +A KL   ML+K
Sbjct: 641 KDAEKLVTEMLRK 653



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 139/297 (46%), Gaps = 46/297 (15%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++V+E  ++ G +  V     I +       A++A+ +L+ M     +PDTI +N V++ 
Sbjct: 373 VEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALKLLKSML---CKPDTISFNAVLKC 429

Query: 174 FCEKGDMIAADELMKGMG-------------LID----------------------LYPD 198
            C+      A EL+  M              LID                        PD
Sbjct: 430 LCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPD 489

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           I+TY S+I GF   G  E A  LF+ M    C A++ +Y+A L G+C     + A EL+ 
Sbjct: 490 IVTYSSLINGFSEQGLDEMAFDLFRSMP---CRADIFSYNATLKGLCMAARWDDAGELIA 546

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +M  E  DC PN VT+  +I   C KG++  A+ + ++M   G  P+  T + LI G+  
Sbjct: 547 DMVTE--DCLPNEVTFNILISSLCQKGLVNRAIDVYEQMPKYGITPDIFTYNALINGYSE 604

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           +G LD+A + +  +       S   Y+S++  L R +R K+AEKL ++ML     P+
Sbjct: 605 QGRLDDALKFLSTMPCEPDTIS---YNSILKGLCRAERWKDAEKLVTEMLRKNCTPN 658



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 107/230 (46%), Gaps = 39/230 (16%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P +I+   +IK  C   RL DA  + + +K  G AA+ V+++ L+ G CR GS+  A E 
Sbjct: 114 PAVISCNILIKKLCARRRLADAERVLEALKASG-AADAVSHNTLVAGYCRDGSLGDA-ER 171

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL---------------- 300
           + E  +  G  + NVVTYT++I  +C  G + +AL ++  M                   
Sbjct: 172 VVEAARASG--TANVVTYTALIDGYCRSGRLADALRLIASMPVAPDTYTYNTVLKGLCCA 229

Query: 301 ----------------GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
                            C PN VT +T I+ FC  G LD A +L++++   G       Y
Sbjct: 230 KQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIY 289

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
           S+LV       R+ EA KL + ML    +P+ +  +  ++ LC+ G+  E
Sbjct: 290 STLVNGFSEHGRVDEALKLLNTMLC---RPNTVCYNAALKGLCIAGRWEE 336



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 12/209 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+  ++K      I+V E   +  C+  +     + N   +  L   A  + R MP    
Sbjct: 466 CQNGQVKD----AIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSMP---C 518

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           R D   YN  ++  C       A EL+  M   D  P+ +T+  +I   C  G +  A  
Sbjct: 519 RADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAID 578

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +++ M ++G   ++  Y+AL++G    G ++ AL+ L  M      C P+ ++Y S+++ 
Sbjct: 579 VYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFLSTMP-----CEPDTISYNSILKG 633

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTI 309
            C     K+A  ++  M    C PN VT 
Sbjct: 634 LCRAERWKDAEKLVTEMLRKNCTPNEVTF 662



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 6/144 (4%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC  AR  ++A  ++  M   D  P+ + +N +I   C+KG +  A ++ + M    + P
Sbjct: 532 LCMAARW-DDAGELIADMVTEDCLPNEVTFNILISSLCQKGLVNRAIDVYEQMPKYGITP 590

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI TY ++I G+   GRL+DA      M    C  + ++Y+++L G+CR    + A +L+
Sbjct: 591 DIFTYNALINGYSEQGRLDDALKFLSTMP---CEPDTISYNSILKGLCRAERWKDAEKLV 647

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIF 281
            EM ++  +C+PN VT+    Q+F
Sbjct: 648 TEMLRK--NCTPNEVTFKYANQLF 669



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 13/152 (8%)

Query: 91  RHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLA 145
           R   F YN      C  +R      +I D+V     E C+ + V    +I +LC+K  L 
Sbjct: 519 RADIFSYNATLKGLCMAARWDDAGELIADMVT----EDCLPNEVTFNILISSLCQKG-LV 573

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N A+ V  +MP++ + PD   YN +I  + E+G +   D+ +K +  +   PD I+Y S+
Sbjct: 574 NRAIDVYEQMPKYGITPDIFTYNALINGYSEQGRL---DDALKFLSTMPCEPDTISYNSI 630

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237
           +KG C A R +DA  L   M R  C  N V +
Sbjct: 631 LKGLCRAERWKDAEKLVTEMLRKNCTPNEVTF 662



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 34/203 (16%)

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P V++   +I+  C +  + +A  +L+ ++A G A + V+ +TL+ G+C +G+L +A ++
Sbjct: 114 PAVISCNILIKKLCARRRLADAERVLEALKASGAA-DAVSHNTLVAGYCRDGSLGDAERV 172

Query: 329 IDKVVAGGSVS--------SGGCYSSLVVELVR-----------------------TKRL 357
           ++   A G+ +         G C S  + + +R                        K+ 
Sbjct: 173 VEAARASGTANVVTYTALIDGYCRSGRLADALRLIASMPVAPDTYTYNTVLKGLCCAKQW 232

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
           ++AE+L  +M+ +   P+ +  +  IR  C  G +     L E + K G   + D  I+S
Sbjct: 233 EQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYG--CTPDVIIYS 290

Query: 418 VLLLGLCRKNHSVEAAKLARFML 440
            L+ G        EA KL   ML
Sbjct: 291 TLVNGFSEHGRVDEALKLLNTML 313


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 165/318 (51%), Gaps = 10/318 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  +E+G    V +   I +   ++     A+ +  +M +  L P    Y  +I   C
Sbjct: 321 LFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVC 380

Query: 176 EKGDMIAADEL---MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
           + G M AA  L   M+G G IDL P  + + ++I G+C +G +++A  L  VM++ G  +
Sbjct: 381 KAGQMEAAQMLVNEMQGKG-IDLNP--VIFNTLIDGYCESGMVDEALRLQVVMEKKGLES 437

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++ AY+++  G+C+L   + A  LL  M + G   SPN +++T++I I+C +G   EA  
Sbjct: 438 DVFAYNSIASGLCKLNRKDEAKGLLFSMVERG--VSPNTMSFTTLIDIYCKEGNFVEAKR 495

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   ME  G  PN +T + LI G+   GN+ EA++L D++   G +      +SL+    
Sbjct: 496 VFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGEC 555

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              ++  A KLF +M   G+ P+ +  + MI  L   G+  E F LY+++++ G   + D
Sbjct: 556 IDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGL--TPD 613

Query: 413 SDIHSVLLLGLCRKNHSV 430
             ++S L+  L   + S+
Sbjct: 614 DTVYSSLVGSLHSADESI 631



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 4/289 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M E  +  D  +Y ++I   C  G++  A  L   M    L P   TY ++I
Sbjct: 317 EAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALI 376

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C AG++E A  L   M+  G   N V ++ L+DG C  G ++ AL L   MEK+G  
Sbjct: 377 HGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKG-- 434

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
              +V  Y S+    C      EA G+L  M   G +PN ++ +TLI  +C EGN  EA 
Sbjct: 435 LESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAK 494

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           ++  ++   G+V +   Y+ L+    +   +KEA KL  ++   G+ PD   C+ +I   
Sbjct: 495 RVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGE 554

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           C+ G+V     L++++ + G + +V +  ++ ++ GL +   S EA KL
Sbjct: 555 CIDGKVDMALKLFDEMPQRGLVPNVVT--YTAMISGLSKDGRSEEAFKL 601



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 148/276 (53%), Gaps = 4/276 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++ + + YN  I  + ++ D+    E++  M    +  +++TY  +I GF N G++E+A 
Sbjct: 260 VKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQ 319

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF+ M+  G  A++  Y++++   CR G+++RAL L  EM  +G    P+  TY ++I 
Sbjct: 320 RLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKG--LIPSAHTYGALIH 377

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G M+ A  +++ M+  G   N V  +TLI G+C  G +DEA +L   +   G  S
Sbjct: 378 GVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLES 437

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y+S+   L +  R  EA+ L   M+  GV P+ ++ + +I   C  G  +E   ++
Sbjct: 438 DVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVF 497

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            ++E+ G + ++ +  ++VL+ G  ++ +  EA KL
Sbjct: 498 REMEEKGNVPNIIT--YNVLIDGYSKRGNMKEAHKL 531



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 50/217 (23%)

Query: 95  FMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150
           F YN      C+++R  +   ++  +VE       +    ++ +    C++     EA  
Sbjct: 440 FAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDI---YCKEGNFV-EAKR 495

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL---MKGMGLI-DLY---------- 196
           V R+M E    P+ I YN +I  + ++G+M  A +L   ++  GLI D+Y          
Sbjct: 496 VFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGEC 555

Query: 197 ---------------------PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
                                P+++TY +MI G    GR E+A  L+  MK  G   +  
Sbjct: 556 IDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDT 615

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
            YS+L      +GS+  A E +  M+ +G     N V
Sbjct: 616 VYSSL------VGSLHSADESIS-MQIQGSQVKANKV 645


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 161/321 (50%), Gaps = 4/321 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G   +V +  ++   C +    ++A  +  +M +  L  +  IY  +I  F +KG     
Sbjct: 137 GVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDG 196

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            EL + M L+ + P++ TY S+I  +C  G+L  A  +F  + + G A N V Y+ L+ G
Sbjct: 197 FELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGG 256

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +CR G + +A  LL  M++     +P   T+  ++   C  G + +AL  L++++ +G  
Sbjct: 257 LCRKGQVSKAEGLLERMKR--AHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLC 314

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P  VT + LI GF   GN     +L+ ++   G   S   Y+ L+   VR+  +++A ++
Sbjct: 315 PTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEM 374

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F  M   G+ PD     V+I  LC+ G ++E   LY+ + ++      +  I++ ++ G 
Sbjct: 375 FHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHL--QPNDVIYNTMINGY 432

Query: 424 CRKNHSVEAAKLARFMLKKRI 444
           C++ +S +A K    M+K  +
Sbjct: 433 CKECNSYKALKFLEEMVKNGV 453



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 5/304 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            CE   ++ +   +L +M    + P+  IY  +I   C  GD+  A  +   M  + L  
Sbjct: 117 FCENGNVS-KGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAA 175

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +   Y  MI GF   G  +D   L++ MK  G   NL  Y++L+   CR G +  A ++ 
Sbjct: 176 NQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVF 235

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ K G  C  N VTY  +I   C KG + +A G+L+RM+     P   T + L+ G C
Sbjct: 236 DEISKRGVAC--NAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLC 293

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G LD+A   ++K+   G   +   Y+ L+    +        +L  +M   G+ P  +
Sbjct: 294 NTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKV 353

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             ++++        + + + ++  +++IG +   D   + VL+ GLC K + VEA+KL +
Sbjct: 354 TYTILMNTFVRSDDIEKAYEMFHLMKRIGLVP--DQHTYGVLIHGLCIKGNMVEASKLYK 411

Query: 438 FMLK 441
            M++
Sbjct: 412 SMVE 415



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 122/247 (49%), Gaps = 3/247 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K +++ +A  +L +M    + P T  +N ++   C  G +  A   ++ + LI
Sbjct: 253 LIGGLCRKGQVS-KAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLI 311

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P ++TY  +I GF   G       L + M+  G + + V Y+ L++   R   +E+A
Sbjct: 312 GLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKA 371

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E+   M++ G    P+  TY  +I   C KG M EA  +   M  +   PN V  +T+I
Sbjct: 372 YEMFHLMKRIG--LVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMI 429

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C E N  +A + ++++V  G   +   Y S +  L +  +  EA++L  +M  +G+K
Sbjct: 430 NGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLK 489

Query: 374 PDGLACS 380
           P    CS
Sbjct: 490 PPESLCS 496



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 146/301 (48%), Gaps = 13/301 (4%)

Query: 118 EAYKEEGCVV--SVKMMKVIFNLCEKARLANE---------AMWVLRKMPEFDLRPDTII 166
           + YK++G  +   +K++ V+ NL     L  E         A  V  ++ +  +  + + 
Sbjct: 190 KGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVT 249

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +I   C KG +  A+ L++ M    + P   T+  ++ G CN G+L+ A    + +K
Sbjct: 250 YNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLK 309

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G    LV Y+ L+ G  ++G+     EL+ EME  G   SP+ VTYT ++  F     
Sbjct: 310 LIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRG--ISPSKVTYTILMNTFVRSDD 367

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +++A  +   M+ +G  P++ T   LI G C++GN+ EA +L   +V      +   Y++
Sbjct: 368 IEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNT 427

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++    +     +A K   +M+ +GV P+  +    I+ LC  G+ +E   L +++ + G
Sbjct: 428 MINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAG 487

Query: 407 F 407
            
Sbjct: 488 L 488



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 135/286 (47%), Gaps = 11/286 (3%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMK---GMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218
           P +  +NN + L  + G++           G    D+Y   IT    IK FC  G +   
Sbjct: 71  PSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFWIT----IKAFCENGNVSKG 126

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             L   M+  G + N+  Y+ L++  CR G +++A  +   M+  G   + N   YT +I
Sbjct: 127 FELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLG--LAANQYIYTIMI 184

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
             F  KG  K+   +  +M+ +G  PN  T ++LI  +C +G L  A+++ D++   G  
Sbjct: 185 NGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVA 244

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y+ L+  L R  ++ +AE L  +M  + + P     ++++  LC  GQ+ +    
Sbjct: 245 CNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSY 304

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            E ++ IG   ++ +  +++L+ G  +  +S   ++L R M  + I
Sbjct: 305 LEKLKLIGLCPTLVT--YNILISGFSKVGNSSVVSELVREMEDRGI 348



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 113/230 (49%), Gaps = 5/230 (2%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           LE +   FK+M   G + +  +++  LD + + G+++R      E     G    +V ++
Sbjct: 54  LEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYL---GRTQFDVYSF 110

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
              I+ FC  G + +   +L +ME +G +PN    + LI+  C  G++D+A  +  ++  
Sbjct: 111 WITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDD 170

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
            G  ++   Y+ ++    +    K+  +L+ KM   GV P+    + +I E C  G++  
Sbjct: 171 LGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSL 230

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            F ++++I K G   + ++  +++L+ GLCRK    +A  L   M +  I
Sbjct: 231 AFKVFDEISKRGV--ACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHI 278



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N S++ ++V   ++ G   S     ++ N   ++    +A  +   M    L PD   Y 
Sbjct: 332 NSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYG 391

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I   C KG+M+ A +L K M  + L P+ + Y +MI G+C       A    + M ++
Sbjct: 392 VLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKN 451

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           G   N+ +Y + +  +C+ G    A  LL EM + G
Sbjct: 452 GVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAG 487


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 175/381 (45%), Gaps = 11/381 (2%)

Query: 33  ERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSY 90
           ERF   L+  K   + EK L  +  ++D   V EV+        +M  +FF WAA + +Y
Sbjct: 62  ERFIRILKIFKWGPDAEKALEVLMLRVDHWLVREVMKTDIGVNVKM--QFFRWAAKRRNY 119

Query: 91  RH--SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
            H  S++M    C +  ++Q   +   + E  +   CVV+   +  +  +   A++ ++A
Sbjct: 120 EHDTSTYMALIRC-LEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKA 178

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIK 207
           + +  ++     +P    YN++I +   +G      EL   M      +PD +TY ++I 
Sbjct: 179 IAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALIS 238

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            FC  GR + A  L   MK +G       Y+ L+    +L  +  AL L  EM  +   C
Sbjct: 239 AFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQY--C 296

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+V TYT +I+     G + EA      M+  GC P+ V ++ +I      G LD+A +
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMK 356

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           L  ++     + S   Y++++  L  +K R  E    F +M  SG+ P     S++I   
Sbjct: 357 LFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGF 416

Query: 387 CLGGQVLEGFCLYEDIEKIGF 407
           C   ++ +   L E++++ GF
Sbjct: 417 CKTNRMEKAMMLLEEMDEKGF 437



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 154/307 (50%), Gaps = 6/307 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+  R  + A  +L +M E  ++P T IY  +I LF +  D+  A  L + M   
Sbjct: 236 LISAFCKLGR-RDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQ 294

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ TY  +I+G   AGR+++A   F  M+R GC  + V  + +++ + + G ++ A
Sbjct: 295 YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDA 354

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           ++L  EM      C P+VVTY ++I+ +F  K    E     +RM+  G +P+  T S L
Sbjct: 355 MKLFQEMGTL--RCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSIL 412

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I GFC    +++A  L++++   G       Y SL+  L + KR   A +LF ++  +  
Sbjct: 413 IDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCG 472

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
                  +VMI+ L   G++ +   +++++ K+G   + D   ++ L+ GL R     EA
Sbjct: 473 SSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLG--CAPDVYAYNALMSGLARTGMLDEA 530

Query: 433 AKLARFM 439
               R M
Sbjct: 531 LSTMRRM 537



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 143/322 (44%), Gaps = 36/322 (11%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA   +EA     +M     RPDT++ NN+I    + G +  A +L + MG +   P ++
Sbjct: 312 KAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVV 371

Query: 201 TYVSMIKG-FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           TY ++IK  F +  R  +    F+ MK  G + +   YS L+DG C+   ME+A+ LL E
Sbjct: 372 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 431

Query: 260 MEKEGGDCSP---------------------------------NVVTYTSVIQIFCGKGM 286
           M+++G    P                                 +   Y  +I+     G 
Sbjct: 432 MDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 491

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + +A+ + D M  LGCAP+    + L+ G    G LDEA   + ++   G +     Y+ 
Sbjct: 492 LDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNI 551

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++  L +T     A ++ S M  S V+PD ++ + ++  L   G   E   L E++  +G
Sbjct: 552 ILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLG 611

Query: 407 FLSSVDSDIHSVLLLGLCRKNH 428
           F    D   +S +L  + + +H
Sbjct: 612 F--EYDLITYSSILEAIGKVDH 631



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 92/212 (43%), Gaps = 40/212 (18%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++ +  KE     S ++  V+     KA   ++A+ +  +M +    PD   YN      
Sbjct: 462 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYN------ 515

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
                                        +++ G    G L++A    + M+ HGC  ++
Sbjct: 516 -----------------------------ALMSGLARTGMLDEALSTMRRMQEHGCIPDI 546

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
            +Y+ +L+G+ + G   RA+E+L  M++      P+VV+Y +V+      GM +EA  ++
Sbjct: 547 NSYNIILNGLAKTGGPHRAMEMLSNMKQ--STVRPDVVSYNTVLGALSHAGMFEEAAKLM 604

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           + M  LG   + +T S++++     G +D  Y
Sbjct: 605 EEMNTLGFEYDLITYSSILEAI---GKVDHEY 633



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 66/134 (49%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I++ +   + GC   V     + +   +  + +EA+  +R+M E    PD   YN ++  
Sbjct: 496 INMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNG 555

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             + G    A E++  M    + PD+++Y +++    +AG  E+A  L + M   G   +
Sbjct: 556 LAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYD 615

Query: 234 LVAYSALLDGICRL 247
           L+ YS++L+ I ++
Sbjct: 616 LITYSSILEAIGKV 629


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 138/274 (50%), Gaps = 6/274 (2%)

Query: 133 KVIFN----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           KV FN    +  KAR   EA+ VL++M      P  + YN++I  + + G +  A EL +
Sbjct: 290 KVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQ 349

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M    + PD++TY ++I G    G+++ A   +  M R+GC+ NL  Y+AL+      G
Sbjct: 350 EMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRG 409

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
                + +  ++   G    P+VVT+ +++ +F   G+  E  G+   M+  G  P R T
Sbjct: 410 KFTEMMAVFDDLRSAG--YVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDT 467

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
             +LI  +   G  D+A ++  +++  G       Y++++  L R  R ++AEKLF++M+
Sbjct: 468 YVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMV 527

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
               KPD L+ S ++       ++ +   L EDI
Sbjct: 528 DRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDI 561



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 47/294 (15%)

Query: 159 DLRPDTIIYN-----NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           DL  D  +++       IR+F   G +  A  +++        PD   Y +++  F  AG
Sbjct: 143 DLHGDRALHHPRVLPTAIRVFARAGCLAEASAILEAAPA----PDASAYTALVSAFSRAG 198

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALL----------------------DGI------- 244
           R  DA  +F+ M   G    LV Y+ +                       DGI       
Sbjct: 199 RFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTY 258

Query: 245 ------CRLGSMER-ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
                 CR   + R A ++  EM+  G +  P+ VT+ S++ ++      +EA+G+L RM
Sbjct: 259 NTLISCCRRRGLHREAAQVFDEMKAAGFE--PDKVTFNSLLDVYGKARKHEEAIGVLKRM 316

Query: 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357
           E  GC P+ VT ++LI  +  +G L+EA +L  ++   G       Y++L+  L R  ++
Sbjct: 317 ENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKI 376

Query: 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
             A   +S+M+ +G  P+    + +I+   + G+  E   +++D+   G++  V
Sbjct: 377 DAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDV 430



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 136/321 (42%), Gaps = 33/321 (10%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           YN   ++  ++   + ++ V +  +  G V  V     + ++  +  L +E   V ++M 
Sbjct: 398 YNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMK 457

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           +    P+   Y ++I  +   G    A E+ K M    +YPDI TY +++      GR E
Sbjct: 458 KAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWE 517

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL-------------------- 256
            A  LF  M    C  + ++YS+LL        +++   L                    
Sbjct: 518 QAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLV 577

Query: 257 --------LGEMEKEGGD-----CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
                   L E EK   +     CS ++    +++ I+    M+K+   +L  M      
Sbjct: 578 LVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSIN 637

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
            +  T ++L+  +   G+ ++   ++ ++ + G       Y++++    R  ++KEA +L
Sbjct: 638 HSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRL 697

Query: 364 FSKMLASGVKPDGLACSVMIR 384
           FS+M  SGVKPD +  ++ I+
Sbjct: 698 FSEMKCSGVKPDIVTYNIFIK 718



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 51/112 (45%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L ++    +RPD   YN VI  +  KG M  A  L   M    + PDI+TY   IK + 
Sbjct: 662 ILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYV 721

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
                E+A  L + +   GC  N   ++++L G  R G M  A   L  + K
Sbjct: 722 ANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAKSFLSNLPK 773


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 160/310 (51%), Gaps = 7/310 (2%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C + R+ +    + D+   +K+   + ++    ++   C++ R   +A+   R M E  +
Sbjct: 413 CSVGRVSEAKEFVDDL---HKDHHKLNNMCYSALVHGYCKEGRF-KDAVSACRVMVERGV 468

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
             D + Y  +I     + D  A   L+K M    L PD + Y +MI     AG L++A G
Sbjct: 469 AMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFG 528

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L+ +M   GC  N+V Y+AL++G+C+ G M++A ELL + E    D +PN +TY   +  
Sbjct: 529 LWDIMVDEGCLPNVVTYTALINGLCKAGLMDKA-ELLSK-ETLVSDVTPNHITYGCFLDH 586

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
               G M++A+ +   M   G     V+ + LI+GFC  G ++EA +L+  +     +  
Sbjct: 587 LTRGGNMEKAVQLHHAMLK-GFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPD 645

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              YS+++ E  +   L+EA KL+  ML  G+KPD LA S ++   C+ G++ + F L +
Sbjct: 646 YITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRD 705

Query: 401 DIEKIGFLSS 410
           ++ + G  S+
Sbjct: 706 EMIRRGMRSN 715



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 149/333 (44%), Gaps = 30/333 (9%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V+ +  + N   + R  N+ + +   +   +++PD  IY+ V+R  CE  D   A E++ 
Sbjct: 96  VRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEMIH 155

Query: 189 GMGLIDLYPDIITYVSMIKGFCNA--------------------------GRLEDACGLF 222
            M        I+ Y  +I G C +                          G+  +A  LF
Sbjct: 156 WMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYGKFNEAELLF 215

Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
           K M   G  AN + YS L+D  CR G M+ A+  L +M K   + +  V  Y S+I  +C
Sbjct: 216 KEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFT--VYPYNSLINGYC 273

Query: 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG 342
             G    A    D M   G  P  VT ++LI G+C EG   +A+++ +++ A G   +  
Sbjct: 274 KLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTY 333

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            +++++  L R   + EA +LF +M    + P  +  +VMI   C  G + E F L +++
Sbjct: 334 TFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEM 393

Query: 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
              GF+   D+  +  L+ GLC      EA + 
Sbjct: 394 VGKGFVP--DTYTYRPLISGLCSVGRVSEAKEF 424



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 118/246 (47%), Gaps = 2/246 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           NEA  + ++M E  L  + I Y+ +I  FC +G+M  A   +  M    +   +  Y S+
Sbjct: 209 NEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSL 268

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G+C  G    A   F  M   G    +V Y++L+ G C  G   +A ++  EM  +G 
Sbjct: 269 INGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKG- 327

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             SPN  T+T++I   C   MM EA+ +   M+     P+ VT + +I+G C  GN+ EA
Sbjct: 328 -ISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEA 386

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           + L+D++V  G V     Y  L+  L    R+ EA++    +     K + +  S ++  
Sbjct: 387 FHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHG 446

Query: 386 LCLGGQ 391
            C  G+
Sbjct: 447 YCKEGR 452



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 145/321 (45%), Gaps = 4/321 (1%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           A+ A +   +M +  L P  + Y ++I  +C +G+   A ++   M    + P+  T+ +
Sbjct: 278 ASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTA 337

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C A  + +A  LF  MK      + V Y+ +++G CR G++  A  LL EM  +G
Sbjct: 338 IISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKG 397

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               P+  TY  +I   C  G + EA   +D +       N +  S L+ G+C EG   +
Sbjct: 398 --FVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKD 455

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A      +V  G      CY+ L+    R    +    L  +M   G++PD +  + MI 
Sbjct: 456 AVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMID 515

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
                G + E F L++ +   G L +V +  ++ L+ GLC+     +A  L++  L   +
Sbjct: 516 RHSKAGNLKEAFGLWDIMVDEGCLPNVVT--YTALINGLCKAGLMDKAELLSKETLVSDV 573

Query: 445 WLQGPYVDKIVEHLKKSGDEE 465
                     ++HL + G+ E
Sbjct: 574 TPNHITYGCFLDHLTRGGNME 594



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 146/344 (42%), Gaps = 41/344 (11%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC +A +  EA+ +  +M E  + P  + YN +I   C  G++  A  L+  M   
Sbjct: 338 IISGLC-RANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGK 396

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  TY  +I G C+ GR+ +A      + +     N + YSAL+ G C+ G  + A
Sbjct: 397 GFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDA 456

Query: 254 LE-----------------------------------LLGEMEKEGGDCSPNVVTYTSVI 278
           +                                    LL EM   G    P+ V YT++I
Sbjct: 457 VSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHG--LRPDAVIYTNMI 514

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
                 G +KEA G+ D M   GC PN VT + LI G C  G +D+A  L  + +     
Sbjct: 515 DRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVT 574

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
            +   Y   +  L R   +++A +L   ML  G     ++ +++IR  C  G++ E   L
Sbjct: 575 PNHITYGCFLDHLTRGGNMEKAVQLHHAML-KGFLATTVSYNILIRGFCRLGKIEEATKL 633

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              +     L   D   +S ++   C++++  EA KL   ML K
Sbjct: 634 LHGMTDNDILP--DYITYSTIIYEQCKRSNLQEAIKLWHTMLDK 675



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +L  M + D+ PD I Y+ +I   C++ ++  A +L   M    L PD + Y  ++
Sbjct: 629 EATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLV 688

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
            G C AG LE A  L   M R G  +N V 
Sbjct: 689 HGCCIAGELEKAFELRDEMIRRGMRSNHVT 718


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 159/307 (51%), Gaps = 11/307 (3%)

Query: 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
           NLCE   +      +L +M    + PD +I++ V+   C++G +  A +++  M +  + 
Sbjct: 256 NLCEWKHVTT----LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE 311

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+++TY +++ G C    +++A  +F  M  +G A N+++Y+ L++G C++  M++A  L
Sbjct: 312 PNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYL 371

Query: 257 LGEM-EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
             EM +KE     PN VTY +++   C  G +++A+ +   M A G  P+  T   L+  
Sbjct: 372 FEEMCQKE---LIPNTVTYNTLMHX-CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDY 427

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C + +LDEA  L+  +           Y+ ++  + R   L+ A  +FS + + G++P+
Sbjct: 428 LCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPN 487

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
               ++MI  LC  G + E   L+ +++  G   S D   ++ +  GL +   ++ A +L
Sbjct: 488 VRTYTIMINGLCRRGLLDEANKLFMEMDGNG--CSPDGCTYNTITQGLLQNKEALRAIQL 545

Query: 436 ARFMLKK 442
            + ML +
Sbjct: 546 LQEMLAR 552



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 175/382 (45%), Gaps = 44/382 (11%)

Query: 93  SSFMYNRA-CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMW 150
           S+  +NR    +++ KQ P++   +       G    V  + ++ N  C   RL   A  
Sbjct: 68  STVDFNRLLTSIAKTKQYPTVF-SLSNQMDSFGIPPDVYTLNILINSFCHLNRLG-FAFS 125

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           VL K+ +   +PDT  +  +IR  C +G +  A  L   M      P+++TY ++I G C
Sbjct: 126 VLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLC 185

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G    A  L + M++  C  ++V Y++++D +C+   +  A  L  +M  +G   SP+
Sbjct: 186 KVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQG--ISPD 243

Query: 271 VVTYTSVIQ----------------------------IF-------CGKGMMKEALGILD 295
           + TYTS+I                             IF       C +G + EA  ++D
Sbjct: 244 IFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVD 303

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   G  PN VT + L+ G C++  +DEA ++ D +V  G   +   Y++L+    + +
Sbjct: 304 MMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQ 363

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           R+ +A  LF +M    + P+ +  + ++   C  G++ +   L+ ++   G +   D   
Sbjct: 364 RMDKATYLFEEMCQKELIPNTVTYNTLMHX-CHVGRLQDAIALFHEMVAHGQIP--DLAT 420

Query: 416 HSVLLLGLCRKNHSVEAAKLAR 437
           + +LL  LC+K+H  EA  L +
Sbjct: 421 YRILLDYLCKKSHLDEAMALLK 442



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 144/292 (49%), Gaps = 4/292 (1%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
            +M  F + PD    N +I  FC    +  A  ++  +  +   PD  T+ ++I+G C  
Sbjct: 93  NQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVE 152

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G++ DA  LF  M   G   N+V Y  L++G+C++G+   A+ LL  ME+  G+C P+VV
Sbjct: 153 GKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQ--GNCQPDVV 210

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
            YTS+I   C    + EA  +  +M   G +P+  T ++LI   C          L++++
Sbjct: 211 VYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQM 270

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +    +     +S++V  L +  ++ EA  +   M+  GV+P+ +  + ++   CL  ++
Sbjct: 271 INSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEM 330

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            E   +++ +   G+  +V S  ++ L+ G C+     +A  L   M +K +
Sbjct: 331 DEAVKVFDTMVHNGYAPNVIS--YNTLINGYCKIQRMDKATYLFEEMCQKEL 380



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 171/371 (46%), Gaps = 33/371 (8%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQM---GIR--FFIWAALQSS------YRHS 93
           N +  +    + +DS C    +   F   S+M   GI    F + +L  S      ++H 
Sbjct: 204 NCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHV 263

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS----VKMM--------KVIFNL--- 138
           + + N+    S+I  +  I   VV+A  +EG +      V MM         V +N    
Sbjct: 264 TTLLNQMIN-SKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMD 322

Query: 139 --CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
             C ++ + +EA+ V   M      P+ I YN +I  +C+   M  A  L + M   +L 
Sbjct: 323 GHCLQSEM-DEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELI 381

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P+ +TY +++   C+ GRL+DA  LF  M  HG   +L  Y  LLD +C+   ++ A+ L
Sbjct: 382 PNTVTYNTLMHX-CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMAL 440

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  +E  G +  P++  YT VI   C  G ++ A  I   + + G  PN  T + +I G 
Sbjct: 441 LKTIE--GSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGL 498

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G LDEA +L  ++   G    G  Y+++   L++ K    A +L  +MLA G   D 
Sbjct: 499 CRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADV 558

Query: 377 LACSVMIRELC 387
              ++++  LC
Sbjct: 559 STTTLLVEMLC 569



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 153/327 (46%), Gaps = 5/327 (1%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N +  I ++ + ++  C   V +   I +   K R   EA  +  KM    + PD   Y 
Sbjct: 189 NTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYT 248

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
           ++I   C   +      L+  M    + PD++ + +++   C  G++ +A  +  +M   
Sbjct: 249 SLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIR 308

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288
           G   N+V Y+AL+DG C    M+ A+++   M   G   +PNV++Y ++I  +C    M 
Sbjct: 309 GVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNG--YAPNVISYNTLINGYCKIQRMD 366

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           +A  + + M      PN VT +TL+   C  G L +A  L  ++VA G +     Y  L+
Sbjct: 367 KATYLFEEMCQKELIPNTVTYNTLMHX-CHVGRLQDAIALFHEMVAHGQIPDLATYRILL 425

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             L +   L EA  L   +  S + PD    +++I  +C  G++     ++ ++   G  
Sbjct: 426 DYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLR 485

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            +V +  +++++ GLCR+    EA KL
Sbjct: 486 PNVRT--YTIMINGLCRRGLLDEANKL 510



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 134/299 (44%), Gaps = 8/299 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+    +M      P T+ +N ++    +         L   M    + PD+ T   +
Sbjct: 51  DDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNIL 110

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I  FC+  RL  A  +   + + G   +   ++ L+ G+C  G +  AL L  +M  EG 
Sbjct: 111 INSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG- 169

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PNVVTY ++I   C  G    A+ +L  ME   C P+ V  +++I   C +  + EA
Sbjct: 170 -FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA 228

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           + L  K+V  G       Y+SL+  L      K    L ++M+ S + PD +  S ++  
Sbjct: 229 FNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDA 288

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
           LC  G++ E      D+  +  +  V+ ++  ++ L+ G C ++   EA K+   M+  
Sbjct: 289 LCKEGKITEA----HDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHN 343



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 123/249 (49%), Gaps = 4/249 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           + V +     G   +V     + N   K +  ++A ++  +M + +L P+T+ YN ++  
Sbjct: 334 VKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHX 393

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G +  A  L   M      PD+ TY  ++   C    L++A  L K ++      +
Sbjct: 394 -CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPD 452

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+ ++DG+CR G +E A ++   +  +G    PNV TYT +I   C +G++ EA  +
Sbjct: 453 IQIYTIVIDGMCRAGELEAARDIFSNLSSKG--LRPNVRTYTIMINGLCRRGLLDEANKL 510

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
              M+  GC+P+  T +T+ +G         A QL+ +++A G  S+    ++L+VE++ 
Sbjct: 511 FMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARG-FSADVSTTTLLVEMLC 569

Query: 354 TKRLKEAEK 362
             +L ++ K
Sbjct: 570 DDKLDQSVK 578



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 129/289 (44%), Gaps = 23/289 (7%)

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAAL-QSSYRHSSFMYNRA---- 100
           +E  + T  A +D  C+          QS+M     ++  +  + Y  +   YN      
Sbjct: 310 VEPNVVTYNALMDGHCL----------QSEMDEAVKVFDTMVHNGYAPNVISYNTLINGY 359

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++ R+ +   +     E   ++  + +      + + C   RL  +A+ +  +M     
Sbjct: 360 CKIQRMDKATYLF----EEMCQKELIPNTVTYNTLMHXCHVGRL-QDAIALFHEMVAHGQ 414

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            PD   Y  ++   C+K  +  A  L+K +   ++ PDI  Y  +I G C AG LE A  
Sbjct: 415 IPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARD 474

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +F  +   G   N+  Y+ +++G+CR G ++ A +L   ME +G  CSP+  TY ++ Q 
Sbjct: 475 IFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLF--MEMDGNGCSPDGCTYNTITQG 532

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
                    A+ +L  M A G + +  T + L++  C +  LD++ + I
Sbjct: 533 LLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC-DDKLDQSVKQI 580



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           + +AL   +RM  +   P+ V  + L+            + L +++ + G        + 
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 109

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           L+       RL  A  + +K+L  G +PD    + +IR LC+ G++ +   L++ +   G
Sbjct: 110 LINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 169

Query: 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           F  +V +  +  L+ GLC+  ++  A +L R M
Sbjct: 170 FQPNVVT--YGTLINGLCKVGNTNAAIRLLRSM 200


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 166/320 (51%), Gaps = 14/320 (4%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  +E+G    V +   I +   ++     A+ +  +M +  L P    Y  +I   C
Sbjct: 317 LFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVC 376

Query: 176 EKGDMIAADEL---MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
           + G M AA  L   M+G G IDL P  + + ++I G+C +G +++A  L  VM++ G  +
Sbjct: 377 KAGQMEAAQMLVNEMQGKG-IDLNP--VIFNTLIDGYCESGMVDEALRLQVVMEKKGLES 433

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++ AY+++  G+C+L   + A  LL  M + G   SPN +++T++I I+C +G   EA  
Sbjct: 434 DVFAYNSIASGLCKLNRKDEAKGLLFSMVERG--VSPNTMSFTTLIDIYCKEGNFVEAKR 491

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +   ME  G  PN +T + LI G+   GN+ EA++L D++   G +      +SL+    
Sbjct: 492 VFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGEC 551

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
              ++  A KLF +M   G+ P+ +  + MI  L   G+  E F LY+++++ G   + D
Sbjct: 552 IDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGL--TPD 609

Query: 413 SDIHSVLLLGLCRKNHSVEA 432
             ++S L+  L    HS E+
Sbjct: 610 DTVYSSLVGSL----HSAES 625



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 4/289 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA  +  +M E  +  D  +Y ++I   C  G++  A  L   M    L P   TY ++I
Sbjct: 313 EAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALI 372

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G C AG++E A  L   M+  G   N V ++ L+DG C  G ++ AL L   MEK+G  
Sbjct: 373 HGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKG-- 430

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
              +V  Y S+    C      EA G+L  M   G +PN ++ +TLI  +C EGN  EA 
Sbjct: 431 LESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAK 490

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           ++  ++   G+V +   Y+ L+    +   +KEA KL  ++   G+ PD   C+ +I   
Sbjct: 491 RVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGE 550

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           C+ G+V     L++++ + G + +V +  ++ ++ GL +   S EA KL
Sbjct: 551 CIDGKVDMALKLFDEMPQRGLVPNVVT--YTAMISGLSKDGRSEEAFKL 597



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 148/276 (53%), Gaps = 4/276 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++ + + YN  I  + ++ D+    E++  M    +  +++TY  +I GF N G++E+A 
Sbjct: 256 VKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQ 315

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            LF+ M+  G  A++  Y++++   CR G+++RAL L  EM  +G    P+  TY ++I 
Sbjct: 316 RLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKG--LIPSAHTYGALIH 373

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G M+ A  +++ M+  G   N V  +TLI G+C  G +DEA +L   +   G  S
Sbjct: 374 GVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLES 433

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y+S+   L +  R  EA+ L   M+  GV P+ ++ + +I   C  G  +E   ++
Sbjct: 434 DVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVF 493

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            ++E+ G + ++ +  ++VL+ G  ++ +  EA KL
Sbjct: 494 REMEEKGNVPNIIT--YNVLIDGYSKRGNMKEAHKL 527


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 205/449 (45%), Gaps = 52/449 (11%)

Query: 4   FSLSRILS-------SSVNIKNSKIFALHFTTASPAE-----------RFYTHLQKNPNN 45
           FS++R L+       SS    +S++F+       P             R  +  +   ++
Sbjct: 7   FSITRTLNHHFFHSLSSPKTHHSRLFSSQTILQDPNSLSSSQYINEISRILSDFRDPHHD 66

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSR 105
           +E+ L     K+    V +VL RC      +G              HSS           
Sbjct: 67  LERPLTAFSQKITPGLVEQVLKRC----KNLGFS-----------AHSS----------- 100

Query: 106 IKQNPSIIIDVVEAYKEEGCV-VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164
            KQ P +I D +   +E  C  +  ++  +IF    +A L  +A+    +M +F ++   
Sbjct: 101 -KQFP-LIWDFLSDMRETRCCEICPEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGV 158

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
              + ++ + C++  +  A E    +  +++ P+  TY  +++G+ + G   +A  LF+ 
Sbjct: 159 GDVDQLLYVLCKRKHVKQAQEFFDKVN-VEVMPNAKTYSILMRGWGDVGDSSEARKLFEE 217

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+  GCA ++VAY++LL+ +C+ G+++ A +L  EM   G   +P+  +Y+  I+ +C  
Sbjct: 218 MRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNG--LAPDACSYSIFIRAYCEV 275

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             +  A  +LDRM      PN  T + ++K  C    +DEAYQL+D+++  G       Y
Sbjct: 276 NDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSY 335

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           +++         + +A +L S+M      PD    +++++ L   G+      ++  +E+
Sbjct: 336 NAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEE 395

Query: 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
            GF  +  +  ++V++ G C+K   +E A
Sbjct: 396 RGFYPAAST--YAVMVHGFCKKKGKLEEA 422



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 121/247 (48%), Gaps = 6/247 (2%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           ++EA  +  +M E     D + YN+++   C+ G++  A +L + MG   L PD  +Y  
Sbjct: 208 SSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSI 267

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
            I+ +C    +  A  +   M+R+    N+  Y+ ++  +C+   ++ A +LL EM + G
Sbjct: 268 FIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERG 327

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
              SP++ +Y ++    C    + +AL ++ RME   C P+R T + ++K     G  D 
Sbjct: 328 --VSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDR 385

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSV-M 382
              +   +   G   +   Y+ +V    + K +L+EA K F  M+  G+ P   +C+V +
Sbjct: 386 VTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPP--YSCTVEL 443

Query: 383 IRELCLG 389
           +R   +G
Sbjct: 444 LRNRVIG 450



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 8/241 (3%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           + E  +E GC V V     +     K    +EA  + R+M    L PD   Y+  IR +C
Sbjct: 214 LFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYC 273

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           E  D+ +A +++  M   +L P++ TY  ++K  C + ++++A  L   M   G + +L 
Sbjct: 274 EVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLW 333

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           +Y+A+    C    + +AL L+  MEKE  +C P+  TY  V+++    G       +  
Sbjct: 334 SYNAIQAFHCDHCEVNKALRLISRMEKE--NCMPDRHTYNMVLKMLLRVGRFDRVTDVWG 391

Query: 296 RMEALGCAPNRVTISTLIKGFC-VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
            ME  G  P   T + ++ GFC  +G L+EA +  + ++  G +    C     VEL+R 
Sbjct: 392 GMEERGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDG-IPPYSC----TVELLRN 446

Query: 355 K 355
           +
Sbjct: 447 R 447



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A+ ++ +M + +  PD   YN V+++    G      ++  GM     YP   TY  M
Sbjct: 349 NKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVM 408

Query: 206 IKGFCNA-GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262
           + GFC   G+LE+AC  F++M   G          L + +  LG  E+   L G+ME+
Sbjct: 409 VHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVELLRNRVIGLGFSEQIDVLAGKMER 466


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 161/321 (50%), Gaps = 4/321 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G   +V +  ++   C +    ++A  +  +M +  L  +  IY  +I  F +KG     
Sbjct: 137 GVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDG 196

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            EL + M L+ + P++ TY S+I  +C  G+L  A  +F  + + G A N V Y+ L+ G
Sbjct: 197 FELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGG 256

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
           +CR G + +A  LL  M++     +P   T+  ++   C  G + +AL  L++++ +G  
Sbjct: 257 LCRKGQVSKAEGLLERMKR--AHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLC 314

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P  VT + LI GF   GN     +L+ ++   G   S   Y+ L+   VR+  +++A ++
Sbjct: 315 PTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEM 374

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F  M   G+ PD     V+I  LC+ G ++E   LY+ + ++      +  I++ ++ G 
Sbjct: 375 FHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHL--QPNDVIYNTMINGY 432

Query: 424 CRKNHSVEAAKLARFMLKKRI 444
           C++ +S +A K    M+K  +
Sbjct: 433 CKECNSYKALKFLEEMVKNGV 453



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 144/304 (47%), Gaps = 5/304 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
            CE   ++ +   +L +M    + P+  IY  +I   C  GD+  A  +   M  + L  
Sbjct: 117 FCENGNVS-KGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAA 175

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +   Y  MI GF   G  +D   L++ MK  G   NL  Y++L+   CR G +  A ++ 
Sbjct: 176 NQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVF 235

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            E+ K G  C  N VTY  +I   C KG + +A G+L+RM+     P   T + L+ G C
Sbjct: 236 DEISKRGVAC--NAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLC 293

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G LD+A   ++K+   G   +   Y+ L+    +        +L  +M   G+ P  +
Sbjct: 294 NTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKV 353

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             ++++        + + + ++  +++IG +   D   + VL+ GLC K + VEA+KL +
Sbjct: 354 TYTILMNTFVRSDDIEKAYEMFHLMKRIGLVP--DQHTYGVLIHGLCIKGNMVEASKLYK 411

Query: 438 FMLK 441
            M++
Sbjct: 412 SMVE 415



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 122/247 (49%), Gaps = 3/247 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K +++ +A  +L +M    + P T  +N ++   C  G +  A   ++ + LI
Sbjct: 253 LIGGLCRKGQVS-KAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLI 311

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P ++TY  +I GF   G       L + M+  G + + V Y+ L++   R   +E+A
Sbjct: 312 GLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKA 371

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E+   M++ G    P+  TY  +I   C KG M EA  +   M  +   PN V  +T+I
Sbjct: 372 YEMFHLMKRIG--LVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMI 429

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+C E N  +A + ++++V  G   +   Y S +  L +  +  EA++L  +M  +G+K
Sbjct: 430 NGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLK 489

Query: 374 PDGLACS 380
           P    CS
Sbjct: 490 PPESLCS 496



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 146/301 (48%), Gaps = 13/301 (4%)

Query: 118 EAYKEEGCVV--SVKMMKVIFNLCEKARLANE---------AMWVLRKMPEFDLRPDTII 166
           + YK++G  +   +K++ V+ NL     L  E         A  V  ++ +  +  + + 
Sbjct: 190 KGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVT 249

Query: 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
           YN +I   C KG +  A+ L++ M    + P   T+  ++ G CN G+L+ A    + +K
Sbjct: 250 YNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLK 309

Query: 227 RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286
             G    LV Y+ L+ G  ++G+     EL+ EME  G   SP+ VTYT ++  F     
Sbjct: 310 LIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRG--ISPSKVTYTILMNTFVRSDD 367

Query: 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346
           +++A  +   M+ +G  P++ T   LI G C++GN+ EA +L   +V      +   Y++
Sbjct: 368 IEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNT 427

Query: 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           ++    +     +A K   +M+ +GV P+  +    I+ LC  G+ +E   L +++ + G
Sbjct: 428 MINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAG 487

Query: 407 F 407
            
Sbjct: 488 L 488



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 113/229 (49%), Gaps = 7/229 (3%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLF-KVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
           P   ++ + +     +G L+   G F + + R     ++ ++   +   C  G++ +  E
Sbjct: 71  PSSFSFNNALDLLAKSGNLDRTWGFFTEYLGR--TQFDVYSFGITIKAFCENGNVSKGFE 128

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           LL +ME  G   SPNV  YT +I+  C  G + +A  +  RM+ LG A N+   + +I G
Sbjct: 129 LLAQMETMG--VSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMING 186

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
           F  +G   + ++L  K+   G + +   Y+SL+ E  R  +L  A K+F ++   GV  +
Sbjct: 187 FFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACN 246

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            +  +++I  LC  GQV +   L E +++     +  +   ++L+ GLC
Sbjct: 247 AVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRT--FNMLMDGLC 293



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N S++ ++V   ++ G   S     ++ N   ++    +A  +   M    L PD   Y 
Sbjct: 332 NSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYG 391

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I   C KG+M+ A +L K M  + L P+ + Y +MI G+C       A    + M ++
Sbjct: 392 VLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKN 451

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           G   N+ +Y + +  +C+ G    A  LL EM + G
Sbjct: 452 GVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAG 487


>gi|326525168|dbj|BAK07854.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 500

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 144/305 (47%), Gaps = 50/305 (16%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+ + R +P    +PD   YN +I   C +   + A EL   M    + P ++TY ++
Sbjct: 204 DDAVRLFRNIP----KPDACSYNTLIDGLCRRSRRVEAQELFSEMVENGIAPTVVTYTTI 259

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I      G L+DA  +F  M R G A N+V YS+L+DG+C+ G    AL+LL  + KE  
Sbjct: 260 INWLAREGCLDDALEMFDEMGRRGIAPNVVTYSSLIDGLCKGGRAASALDLLERLAKEVK 319

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
              PN + Y+SVI   C +G+++EA+ +LDRM   G  P+      LI G C  G   EA
Sbjct: 320 --LPNTIIYSSVINGLCKEGLLREAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEA 377

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR- 384
              +D                                   +M+ +GV+P+ +  S+ +R 
Sbjct: 378 ANYLD-----------------------------------EMVLAGVQPNRVTWSLHVRI 402

Query: 385 ------ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
                  LC+ G+V   F +Y+ +   G +S+  S  H +L+    +KNH  +AA +   
Sbjct: 403 NVAVVTALCVKGEVGRAFQVYQSMRTRG-ISTEPSTFH-LLVEFFSKKNHLEKAAHVVLD 460

Query: 439 MLKKR 443
           ML +R
Sbjct: 461 MLSER 465



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 15/254 (5%)

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAANLVAYSALLDGICRLGSMER 252
           DL P  +T   +++ FC   R  DA  LF+          +  +Y+A+L G+     +  
Sbjct: 112 DLEPPFLT---LLRAFCRTHRPLDALQLFRSAPSALSLPHSARSYTAVLAGLVAHSHLPL 168

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFC--GKGMMKEALGILDRMEALGCAPNRVTIS 310
           A  LL +M   G    P   TY  +++  C      + +A+ +   +      P+  + +
Sbjct: 169 AHSLLADMRASG--FGPTTATYNVLLKAHCSDAAAHIDDAVRLFRNIP----KPDACSYN 222

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           TLI G C      EA +L  ++V  G   +   Y++++  L R   L +A ++F +M   
Sbjct: 223 TLIDGLCRRSRRVEAQELFSEMVENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMGRR 282

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           G+ P+ +  S +I  LC GG+      L E + K   L   ++ I+S ++ GLC++    
Sbjct: 283 GIAPNVVTYSSLIDGLCKGGRAASALDLLERLAKEVKLP--NTIIYSSVINGLCKEGLLR 340

Query: 431 EAAK-LARFMLKKR 443
           EA + L R  L+ R
Sbjct: 341 EAMEVLDRMRLQGR 354



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 10/254 (3%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G   +V     I N   +    ++A+ +  +M    + P+ + Y+++I   C+ G   
Sbjct: 246 ENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMGRRGIAPNVVTYSSLIDGLCKGGRAA 305

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
           +A +L++ +      P+ I Y S+I G C  G L +A  +   M+  G   +   +  L+
Sbjct: 306 SALDLLERLAKEVKLPNTIIYSSVINGLCKEGLLREAMEVLDRMRLQGRKPDAGLFGKLI 365

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYT-------SVIQIFCGKGMMKEALGIL 294
            G+C  G    A   L EM   G    PN VT++       +V+   C KG +  A  + 
Sbjct: 366 VGLCDAGRAVEAANYLDEMVLAG--VQPNRVTWSLHVRINVAVVTALCVKGEVGRAFQVY 423

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             M   G +    T   L++ F  + +L++A  ++  +++   +     +  +V      
Sbjct: 424 QSMRTRGISTEPSTFHLLVEFFSKKNHLEKAAHVVLDMLSERCIPERETWDVIVSGYWSK 483

Query: 355 KRLK-EAEKLFSKM 367
           K+++ EAE++++K+
Sbjct: 484 KKVRQEAEQIWNKL 497


>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
          Length = 327

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 147/288 (51%), Gaps = 5/288 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++ M +L +M E  LRPD  I+N V+   C +G +  A E ++ +      PD+I+Y  +
Sbjct: 42  DDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRYISAKGYAPDVISYSIL 101

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           ++G  N  + ED   L   M   GC  N+V YS L+  +CR G +E A+ LL  M+++G 
Sbjct: 102 LRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDGKVEEAVSLLKVMKEQG- 160

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             +P+  +Y  +I  FC +  +  A+  L+ M + GC P+ V  +T++   C  G  DEA
Sbjct: 161 -LTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNTILSTLCKNGKADEA 219

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            ++ +K+   G   +   Y++L   L  +     A  +  +ML+  + PD +  + +I  
Sbjct: 220 LKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIRALGMILEMLSKDIDPDEITYNSLISC 279

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           LC    V +   L  D+E   +  SV S  ++++LLGL  K H +  A
Sbjct: 280 LCRDAMVDQAIELLVDMESSVYQPSVIS--YNIVLLGL-SKVHRISDA 324



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 101/195 (51%), Gaps = 4/195 (2%)

Query: 123 EGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           +GC  +V    + I +LC   ++  EA+ +L+ M E  L PD   Y+ +I  FC++  + 
Sbjct: 124 KGCEPNVVTYSILISSLCRDGKV-EEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVD 182

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A E ++ M      PDI+ Y +++   C  G+ ++A  +F+ +   GC  N+ +Y+ L 
Sbjct: 183 LAIEFLESMISDGCLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLF 242

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
             +   G   RAL ++ EM  +  D  P+ +TY S+I   C   M+ +A+ +L  ME+  
Sbjct: 243 SALWSSGHKIRALGMILEMLSK--DIDPDEITYNSLISCLCRDAMVDQAIELLVDMESSV 300

Query: 302 CAPNRVTISTLIKGF 316
             P+ ++ + ++ G 
Sbjct: 301 YQPSVISYNIVLLGL 315



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 85/159 (53%), Gaps = 2/159 (1%)

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           ++VTYT +I+    KG + + + +LD M   G  P+    + ++ G C EG +D A++ I
Sbjct: 24  SLVTYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFI 83

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
             + A G       YS L+  L+  ++ ++ EKL S ML+ G +P+ +  S++I  LC  
Sbjct: 84  RYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRD 143

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           G+V E   L + +++ G   + D+  +  L+   C+++ 
Sbjct: 144 GKVEEAVSLLKVMKEQGL--TPDAYSYDPLIAAFCKESR 180



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 6/156 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD 159
           C+ SR+     + I+ +E+   +GC+  +     I + LC+  + A+EA+ +  K+ E  
Sbjct: 176 CKESRV----DLAIEFLESMISDGCLPDIVNYNTILSTLCKNGK-ADEALKIFEKLGEVG 230

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
             P+   YN +       G  I A  ++  M   D+ PD ITY S+I   C    ++ A 
Sbjct: 231 CPPNVSSYNTLFSALWSSGHKIRALGMILEMLSKDIDPDEITYNSLISCLCRDAMVDQAI 290

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            L   M+      ++++Y+ +L G+ ++  +  A+E
Sbjct: 291 ELLVDMESSVYQPSVISYNIVLLGLSKVHRISDAIE 326


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 137/285 (48%), Gaps = 4/285 (1%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           V+ +M E    P     ++++     KG ++ A +L+  +  +   P +  Y ++I   C
Sbjct: 318 VMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLC 377

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G+ ++A  LFK M   G  AN V YS L+D  CR G ++ A+  LG+M   G      
Sbjct: 378 KDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAG--IKIT 435

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           V  Y S+I   C  G +  A+   D M   G  P  V+ ++LI G+C +G L EA++L  
Sbjct: 436 VYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYH 495

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           ++   G   +   +++L+  L R  R+ +A +LF +ML   + P+ +  +VMI   C  G
Sbjct: 496 EMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEG 555

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             ++ F L   + + G +   D+  +  L+  LC      EA K 
Sbjct: 556 NTVKAFELLNQMVQKGLVP--DTYTYRPLISSLCSTGRVCEAKKF 598



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 151/288 (52%), Gaps = 6/288 (2%)

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
           C++ RL  +A+ V R+M +  +  D + Y  +I    ++ D  A   L+K M    L PD
Sbjct: 622 CKEGRL-RDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPD 680

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
            + Y SMI G+  AG ++ A G++ +M   GC  N+V Y+ L++ +C+ G M++A  L  
Sbjct: 681 KVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWK 740

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           EM     + +PN VTY   +     +G M++A+ + + M   G   N V+ + L++GFC 
Sbjct: 741 EMLV--SNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCK 797

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G ++EA +L+D+++          YS+++ +  R   L  A + +  ML  G+KPD LA
Sbjct: 798 LGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLA 857

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
            + +I   C+ G++ + F L +D+ + G     +   H  L  G  RK
Sbjct: 858 YNFLIYGCCIAGELGKAFELRDDMIRRGV--KPNQATHKSLSHGASRK 903



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 146/298 (48%), Gaps = 4/298 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A  ++ ++ +    P   +YN +I   C+ G    A+ L K MG   L  + +TY  +I
Sbjct: 349 DAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILI 408

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
             FC  G+L+ A      M   G    +  Y++L++G C+LG++  A+    EM  +G  
Sbjct: 409 DSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKG-- 466

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P VV+YTS+I  +C KG + EA  +   M   G APN  T +TLI        + +A+
Sbjct: 467 LKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAF 526

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L D+++    + +   Y+ ++    +     +A +L ++M+  G+ PD      +I  L
Sbjct: 527 RLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSL 586

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           C  G+V E     +D+ +  F   ++   +S LL G C++    +A  + R M+K+ +
Sbjct: 587 CSTGRVCEAKKFIDDLHREHF--KLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGV 642



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 150/335 (44%), Gaps = 36/335 (10%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           +A    +A  +  +M E ++ P+ + YN +I   C++G+ + A EL+  M    L PD  
Sbjct: 518 RANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTY 577

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY  +I   C+ GR+ +A      + R     N + YSALL G C+ G +  AL +  EM
Sbjct: 578 TYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREM 637

Query: 261 EKEGGDCS---------------------------------PNVVTYTSVIQIFCGKGMM 287
            K G D                                   P+ V YTS+I  +   G +
Sbjct: 638 VKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSV 697

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           K+A GI D M   GC PN VT +TLI   C  G +D+A  L  +++   S  +   Y   
Sbjct: 698 KKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCF 757

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  L R   +++A +L + ML  G+  + ++ ++++R  C  G+V E   L +++     
Sbjct: 758 LDHLAREGSMEKAVQLHNDML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAI 816

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
               D   +S ++   CR+ +   A +    ML K
Sbjct: 817 FP--DCITYSTIIYQCCRRGNLDGAIEFWDTMLNK 849



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 188/431 (43%), Gaps = 27/431 (6%)

Query: 53  VKAKLDSTCVIEVLHRCFPS---QSQMGIRFFIWAALQSSYRHSS---FMYNRACE-MSR 105
           ++  LD   V E L  CF      S +G    I + +Q      S   F   R CE M +
Sbjct: 133 LRGGLDPREVFEALLDCFEKCDFISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQ 192

Query: 106 IKQNPSII--------IDVVEAYKEEGCVVSVK-----MMKVIFNLCEKARLANEAMWVL 152
           ++    ++        +D+V     E   + ++      + VI + CE    A +A  ++
Sbjct: 193 VRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFA-KAKEMI 251

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           ++M   DL  + ++YN +I   C+   +  A E+  G+    L    +TY +++ G C  
Sbjct: 252 QRMESSDL--NVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKV 309

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
              E   G+   M   G      A S+L++G+ R G +  A +L+  ++K G    P++ 
Sbjct: 310 QEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGA--MPSLF 367

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
            Y ++I   C  G   EA  +   M   G   N VT S LI  FC  G LD A   + K+
Sbjct: 368 VYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKM 427

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +  G   +   Y+SL+    +   L  A   F +M+  G+KP  ++ + +I   C  G++
Sbjct: 428 IMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKL 487

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452
            E F LY ++   G   + ++   + L+  L R N   +A +L   ML++ +       +
Sbjct: 488 HEAFRLYHEMTGKGI--APNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYN 545

Query: 453 KIVEHLKKSGD 463
            ++E   K G+
Sbjct: 546 VMIEGHCKEGN 556


>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
 gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
          Length = 695

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 153/291 (52%), Gaps = 6/291 (2%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M E  L P+ I+YNN+I   C+ G +  A+  +K M      P++++Y  +I G+C A  
Sbjct: 1   MLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCKARN 59

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
           +E A    + M+  G      AYS+++   C+ G++ +A+++  EM  +G  C P++V +
Sbjct: 60  IEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKG--CEPDIVNF 117

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             ++        + EA  +   M + GC P+ VT +T+I G C    LDEA  L++++  
Sbjct: 118 NVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQ 177

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
                +   Y++L+  L +  RL++A ++F KM          A SV+  +L   G+++E
Sbjct: 178 EDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRAGKLVE 237

Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKKRI 444
              +Y D+ +      +  + +S+++LGL + +  +VEAAKL   M+ K+I
Sbjct: 238 ASRVYSDMCRKNV--CMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKI 286



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 156/321 (48%), Gaps = 5/321 (1%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           + C  +V    +I +   KAR   +A+  LR+M E    P    Y+++++ FC+ G++  
Sbjct: 38  QHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSK 97

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A ++   M      PDI+ +  ++ G   A ++ +A  LF+ M   GC  ++V Y+ ++ 
Sbjct: 98  AMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIA 157

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C+   ++ A+ LL  M++E  D SP  VTYT++I   C    +++A  + ++M    C
Sbjct: 158 GLCKWKKLDEAVFLLERMKQE--DVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPC 215

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK-EAE 361
           A      S L       G L EA ++   +       +   YS +V+ L +      EA 
Sbjct: 216 ACTEPAYSVLFNKLQRAGKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAA 275

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           KL ++M+   + PD  A S++I  LC   +  E   +++++   G   +V +  ++ LL 
Sbjct: 276 KLVTEMMGKKIAPDFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVT--YNTLLE 333

Query: 422 GLCRKNHSVEAAKLARFMLKK 442
           GL       +A +L  FML +
Sbjct: 334 GLLSTAKLQDAMELTYFMLDQ 354



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 158/341 (46%), Gaps = 18/341 (5%)

Query: 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168
           N S  +DV      +GC   +    V+ +   +AR  +EA  + R M     +PD + YN
Sbjct: 94  NVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYN 153

Query: 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228
            +I   C+   +  A  L++ M   D+ P  +TY ++I   C   RL+ A  +F+ M   
Sbjct: 154 TMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEG 213

Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV----TYTSVIQIFCG- 283
            CA    AYS L + + R G +  A  +  +M      C  NV     TY+ V+      
Sbjct: 214 PCACTEPAYSVLFNKLQRAGKLVEASRVYSDM------CRKNVCMTDNTYSLVVLGLSKM 267

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G   EA  ++  M     AP+    S LI G C      EA ++  ++   G   +   
Sbjct: 268 DGGNVEAAKLVTEMMGKKIAPDFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVT 327

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
           Y++L+  L+ T +L++A +L   ML  G  PD  + ++MIR  C  G   E +CL++D+ 
Sbjct: 328 YNTLLEGLLSTAKLQDAMELTYFMLDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMI 387

Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           K G +  +++  ++ +++G  +     + A  + +ML KR+
Sbjct: 388 KDGIV--LNTWTYNFMIVGFIK-----DEAWSSAWMLFKRM 421



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 119/275 (43%), Gaps = 3/275 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KAR   EA  + ++M    + P  + YN ++        +  A EL   M   
Sbjct: 296 LINGLC-KARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQ 354

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD  +Y  MI+GFC  G   +A  LF+ M + G   N   Y+ ++ G  +  +   A
Sbjct: 355 GRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIKDEAWSSA 414

Query: 254 LELLGEMEKEGGD--CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
             L   M+    D   +PN+ TY  +I   C    ++EA  +L  M   G  P+      
Sbjct: 415 WMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEV 474

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           L+      G LD+A++L  ++         G  + L+  ++R   + EA+    +M  +G
Sbjct: 475 LLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTG 534

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
           + PD      ++  LC  G+  +   L E++ + G
Sbjct: 535 IVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDG 569



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 112/267 (41%), Gaps = 8/267 (2%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PDT  YN +IR FC  GD   A  L + M    +  +  TY  MI GF        A  L
Sbjct: 358 PDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIKDEAWSSAWML 417

Query: 222 FKVMKRHG----CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           FK M+        A N+  Y  L+  +C+   +E A +LL  M  +G    P++  +  +
Sbjct: 418 FKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKG--FVPSLKIWEVL 475

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           +      G + +A  +   M  + C     + + L+ G    G++DEA   + ++   G 
Sbjct: 476 LSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGI 535

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
           V     Y  LVV L    +  +A KL  +++  G +P+      ++  LC  G     + 
Sbjct: 536 VPDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKRPENQGLRQLLGALCAQGDFQGAYE 595

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            Y  +  +G    V   +H+ L+   C
Sbjct: 596 FYCWLPSVGV--EVTLGMHNTLVTSCC 620



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 2/196 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+   Y  +I   C+   +  A +L+  M      P +  +  ++     AGRL+DA  L
Sbjct: 432 PNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFEL 491

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           +K M R  C   + + + LLDGI R GS++ A + L +M   G    P+  TY  ++   
Sbjct: 492 YKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTG--IVPDKFTYDKLVVGL 549

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C +G   +A  +++ +   G  P    +  L+   C +G+   AY+    + + G   + 
Sbjct: 550 CWQGKADQARKLVEELVRDGKRPENQGLRQLLGALCAQGDFQGAYEFYCWLPSVGVEVTL 609

Query: 342 GCYSSLVVELVRTKRL 357
           G +++LV      ++L
Sbjct: 610 GMHNTLVTSCCLARKL 625



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR----PDTIIYNNVI 171
           ++ A +++G V S+K+ +V+ +   +A   ++A  + ++M   + +       I+ + ++
Sbjct: 456 LLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGIL 515

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           R    +G +  A + +K M    + PD  TY  ++ G C  G+ + A  L + + R G  
Sbjct: 516 R----RGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKR 571

Query: 232 ANLVAYSALLDGICRLGSMERALEL 256
                   LL  +C  G  + A E 
Sbjct: 572 PENQGLRQLLGALCAQGDFQGAYEF 596


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 158/360 (43%), Gaps = 39/360 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            I N    A     ++ VL KM      P+   + ++I+ F  KG    A +    M   
Sbjct: 286 TIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIRE 345

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+++ Y +++ G C+   L DA  +F  M+ +GC  N+  YSAL+DG  + G ++ A
Sbjct: 346 GVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGA 405

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E+   M   G  C PNVV YT ++ + C   M  +A  +++ M+   C PN VT +T I
Sbjct: 406 SEVWNWMITHG--CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFI 463

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR----------------- 356
           KG C  G +D A ++ D++   G   +   Y+ L+  L++ +R                 
Sbjct: 464 KGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIE 523

Query: 357 ------------------LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                             L EA +L  KM+  G KPD +  +++I   C  G+V     L
Sbjct: 524 LNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQL 583

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
            + +    +   + +  ++ L+ G+C      EA    R ML + I       + +V HL
Sbjct: 584 MDRLSAGKWHPDIIA--YTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 156/338 (46%), Gaps = 32/338 (9%)

Query: 76  MGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI 135
           + + +F   A   S++H+   Y    E    ++    +  +++  K EG   S  +   +
Sbjct: 58  LALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISV 117

Query: 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
                +A  + +A+    +M +F ++P   IYN+++    ++      + +   M    +
Sbjct: 118 IGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGM 177

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG------- 248
            P++ TY  ++K  C   R++ A  L   M   GC  + V+Y+ L+  +C+LG       
Sbjct: 178 EPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARE 237

Query: 249 -----------------------SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
                                  + E A +LL EM  +G D  PNV++YT++I      G
Sbjct: 238 LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGID--PNVISYTTIINALSDAG 295

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            ++ +L +L +M A GC+PN  T ++LIKGF ++G   EA    D+++  G V +   Y+
Sbjct: 296 NVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYN 355

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +L+  L   + L +A  +F++M  +G  P+    S +I
Sbjct: 356 ALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALI 393



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 137/275 (49%), Gaps = 5/275 (1%)

Query: 115 DVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           D V  + +    GC  +V+    + +   KA   + A  V   M      P+ + Y  ++
Sbjct: 369 DAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMV 428

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
            + C       A  L++ M + +  P+ +T+ + IKG C +GR++ A  +F  M   GC 
Sbjct: 429 DVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCF 488

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            N   Y+ LLD + +      A  L+ +ME  G +   N+VTY ++I  +C  GM+ EAL
Sbjct: 489 PNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIEL--NLVTYNTIIYGYCCAGMLGEAL 546

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +L +M   G  P+ +T++ +I  +C +G ++ A QL+D++ AG        Y+SL+  +
Sbjct: 547 ELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGI 606

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
                ++EA     +ML+ G+ P+    +V++R L
Sbjct: 607 CTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 156/327 (47%), Gaps = 16/327 (4%)

Query: 85  ALQSSYRHSSF-------MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137
           AL++ YR   F       +YN   +    +    +I  +    K++G   +V    ++  
Sbjct: 130 ALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLK 189

Query: 138 -LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
            LC+  R+ + A  +L +M      PD + Y  +I   C+ G +  A EL      +   
Sbjct: 190 ALCKNNRV-DGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELA-----MSFT 243

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P +  Y ++I G C     E+A  L   M   G   N+++Y+ +++ +   G++E +L +
Sbjct: 244 PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAV 303

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L +M   G  CSPN+ T+TS+I+ F  KG   EAL   DRM   G  PN V  + L+ G 
Sbjct: 304 LAKMFARG--CSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGL 361

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C + +L +A  + +++   G   +   YS+L+    +   L  A ++++ M+  G  P+ 
Sbjct: 362 CSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNV 421

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIE 403
           +A + M+  LC      + +CL E+++
Sbjct: 422 VAYTCMVDVLCRNSMFNQAYCLIENMQ 448



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 101/241 (41%), Gaps = 33/241 (13%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
            GC  +V     + ++  +  + N+A  ++  M   +  P+T+ +N  I+  C  G +  
Sbjct: 415 HGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDW 474

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A ++   MG    +P+  TY  ++       R  +A GL K M+  G   NLV Y+ ++ 
Sbjct: 475 AIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIY 534

Query: 243 GICRLGSMERALELLGEMEKEG---------------------------------GDCSP 269
           G C  G +  ALELLG+M   G                                 G   P
Sbjct: 535 GYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHP 594

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           +++ YTS+I   C    ++EA+  L RM + G +PN  T + L++          A Q +
Sbjct: 595 DIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFL 654

Query: 330 D 330
           D
Sbjct: 655 D 655


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 165/317 (52%), Gaps = 4/317 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A  VL +M      P  + Y   I   C  G +  A  L++ + + +   +   Y ++I
Sbjct: 271 KATEVLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVI 330

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
             FC  G L +A  L + M+ HG +    +YS L+DG+C+ G +E+AL+L+ EM +   +
Sbjct: 331 HEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQ--SN 388

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P++VTY+S+    C  G+ + +L +   + A G   + ++ +TLI GF ++ ++  A 
Sbjct: 389 VKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSAC 448

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L+ ++   GSV +   ++ L+    + +RL +A ++F+ ML  GV+ +   C++M  E 
Sbjct: 449 KLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEF 508

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
              G   E   L  +++ +G +   +S  +++++  LC++  + +A ++   MLK  ++ 
Sbjct: 509 NREGHFWEALKLINEVQDLGIVP--NSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFP 566

Query: 447 QGPYVDKIVEHLKKSGD 463
              + + +++   K  +
Sbjct: 567 CAIHYNTLIDGYAKQSN 583



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 4/295 (1%)

Query: 90  YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEA 148
           Y+H    YN       ++++      +V   +  G V  S    ++I   C++ RL ++A
Sbjct: 424 YKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRL-DKA 482

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208
           + V   M +  ++ +    N +   F  +G    A +L+  +  + + P+  TY  +IK 
Sbjct: 483 LEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKW 542

Query: 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268
            C   + E A  +  VM ++      + Y+ L+DG  +  +  +AL L  +M K G    
Sbjct: 543 LCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVG--IP 600

Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328
           P++VTYT +I +F  +  M+EA  +   M   G  P+ +  + +I GFC  G++  A+ L
Sbjct: 601 PSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWAL 660

Query: 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
            +++   G   +   Y+ L+    + KR+ +A+ LF+KM    V PDGL  + +I
Sbjct: 661 YEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDGLTYTALI 715



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 137/293 (46%), Gaps = 2/293 (0%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +D++E   +     S+     +F+   K+ L   ++ +   +     + D I YN +I  
Sbjct: 378 LDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLING 437

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           F  + DM +A +L+  M +    P+  T+  +I GFC   RL+ A  +F +M + G   N
Sbjct: 438 FVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLN 497

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +   + + D   R G    AL+L+ E++  G    PN  TY  VI+  C +   ++A  +
Sbjct: 498 IFTCNIMADEFNREGHFWEALKLINEVQDLG--IVPNSYTYNIVIKWLCKEQKTEKAWEV 555

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L  M      P  +  +TLI G+  + N  +A  L  K++  G   S   Y+ L+     
Sbjct: 556 LPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSN 615

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
             +++EA  LF +M+  G+ PD +  + +I   C  G +   + LYE++ + G
Sbjct: 616 RSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWG 668



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 147/309 (47%), Gaps = 5/309 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI   C    L +EA  +L  M    + P    Y+ +I   C+KG +  A +L++ M   
Sbjct: 329 VIHEFCRNGEL-HEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQS 387

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ P ++TY S+  G C +G  E +  +F  +   G   ++++Y+ L++G      M  A
Sbjct: 388 NVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSA 447

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L+ EM   G    PN  T+  +I  FC +  + +AL +   M  +G   N  T + + 
Sbjct: 448 CKLVHEMRMNGS--VPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMA 505

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
             F  EG+  EA +LI++V   G V +   Y+ ++  L + ++ ++A ++   ML + V 
Sbjct: 506 DEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVF 565

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P  +  + +I          +   LY  + K+G   S+ +  +++L+     ++   EA 
Sbjct: 566 PCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVT--YTMLINMFSNRSKMQEAY 623

Query: 434 KLARFMLKK 442
            L + M+KK
Sbjct: 624 YLFKEMIKK 632



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 151/314 (48%), Gaps = 8/314 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+K ++  +A+ ++ +M + +++P  + Y+++    C+ G    +  +   +G      
Sbjct: 368 LCKKGQV-EKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKH 426

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+I+Y ++I GF     +  AC L   M+ +G   N   ++ L+ G C+   +++ALE+ 
Sbjct: 427 DVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVF 486

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M K G     N+ T   +   F  +G   EAL +++ ++ LG  PN  T + +IK  C
Sbjct: 487 TIMLKVG--VQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLC 544

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            E   ++A++++  ++          Y++L+    +     +A  L++KML  G+ P  +
Sbjct: 545 KEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIV 604

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
             +++I       ++ E + L++++ K G +   D  I + ++ G C+      A  L  
Sbjct: 605 TYTMLINMFSNRSKMQEAYYLFKEMIKKGLVP--DEIIFTCIIAGFCKVGDMKSAWALYE 662

Query: 438 FMLKKRIWLQGPYV 451
            M +   W + P V
Sbjct: 663 EMSQ---WGKSPNV 673



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 2/236 (0%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ ++ ++ +  + P++  YN VI+  C++     A E++  M   +++P  I Y ++I
Sbjct: 516 EALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLI 575

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+        A  L+  M + G   ++V Y+ L++       M+ A  L  EM K+G  
Sbjct: 576 DGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKG-- 633

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+ + +T +I  FC  G MK A  + + M   G +PN VT + LI G+     +D+A 
Sbjct: 634 LVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKAD 693

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
            L +K+        G  Y++L+             ++F++M  +GV P+  A + +
Sbjct: 694 FLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEMKENGVFPNYTAYATL 749



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 112/219 (51%), Gaps = 5/219 (2%)

Query: 134 VIFNLCEKARLANEAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           VI  LC++ +   E  W VL  M + ++ P  I YN +I  + ++ +   A  L   M  
Sbjct: 539 VIKWLCKEQK--TEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLK 596

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           + + P I+TY  +I  F N  ++++A  LFK M + G   + + ++ ++ G C++G M+ 
Sbjct: 597 VGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKS 656

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A  L  EM + G   SPNVVTYT +I  +     M +A  + ++M+     P+ +T + L
Sbjct: 657 AWALYEEMSQWGK--SPNVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDGLTYTAL 714

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
           I G+   G  D   ++ +++   G   +   Y++L + L
Sbjct: 715 IFGYQSLGYSDRVREMFNEMKENGVFPNYTAYATLGLHL 753



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 6/199 (3%)

Query: 83  WAALQSSYRHSSF----MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL 138
           W  L    +++ F     YN   +    + NP+  + +     + G   S+    ++ N+
Sbjct: 553 WEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINM 612

Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
                   EA ++ ++M +  L PD II+  +I  FC+ GDM +A  L + M      P+
Sbjct: 613 FSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPN 672

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           ++TY  +I G+    R++ A  LF  MKR     + + Y+AL+ G   LG  +R  E+  
Sbjct: 673 VVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMFN 732

Query: 259 EMEKEGGDCSPNVVTYTSV 277
           EM++ G    PN   Y ++
Sbjct: 733 EMKENG--VFPNYTAYATL 749



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 112/273 (41%), Gaps = 44/273 (16%)

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           II    +IK F     L DA  +F   +R G   N+++ + LL+        E    L  
Sbjct: 178 IIVANVLIKVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFE 237

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFC----GKGM-MKEALGILDRMEALGCAPNRVTISTLI 313
           E++  G   SPNV TYT ++  +C    GK + + +A  +L+ ME  G +P  VT    I
Sbjct: 238 ELKDSGP--SPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYI 295

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G ++ A +LI  +       +  CY+++                          
Sbjct: 296 HGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAV-------------------------- 329

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
                    I E C  G++ E F L ED+   G   +  S  +S+L+ GLC+K    +A 
Sbjct: 330 ---------IHEFCRNGELHEAFELLEDMRSHGISPTAYS--YSILIDGLCKKGQVEKAL 378

Query: 434 KLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466
            L   M++  +         + + L KSG  E+
Sbjct: 379 DLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEI 411


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 12/346 (3%)

Query: 124 GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFD-----LRPDTIIYNNVIRLFCEK 177
           GC  +V    ++   LC++ R + +A+ +L  M   D       PD + YN VI     +
Sbjct: 157 GCTPNVFSYTILLKGLCDENR-SQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLRE 215

Query: 178 GDMI-AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
           G  +  A  L   M    L PD++TY S+I     A  ++ A  +   M ++G   N + 
Sbjct: 216 GRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRIT 275

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           +++LL G C  G    A+ +   M ++G    P+V TY +++   C  G   EA  I D 
Sbjct: 276 HNSLLHGYCSSGKPNDAIGVFKRMCRDG--VEPDVFTYNTLMGYLCKNGRSMEARKIFDS 333

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M   G  PN  T  TL+ G+  EG+L + + L+D +V  G       ++ L+    +  +
Sbjct: 334 MVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGK 393

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
           + +A  LFSKM   G+ PD +   +++  LC+ G+V +    +  +   G   + D+ + 
Sbjct: 394 VDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGL--TPDAVVF 451

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
             L+ GLC ++   +A +LA  M+ + I     + + ++ HL K G
Sbjct: 452 RNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEG 497



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 151/306 (49%), Gaps = 4/306 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           ++PD  I+N +I  + + G +  A  L   M    L PD +TY  ++   C  G+++DA 
Sbjct: 374 IQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAM 433

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
             F  +   G   + V +  L+ G+C     ++A EL  EM   G    PN + + +++ 
Sbjct: 434 AQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRG--ICPNNIFFNTLLN 491

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C +GM+  A  I D M  +    + +T +TLI G+C+ G +DEA +L++ +V  G   
Sbjct: 492 HLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKP 551

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y++++    +  R+++A  LF +M + GV P  +  S +++ L    +      LY
Sbjct: 552 NEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELY 611

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459
             + K G     D   ++++LLGLC+ N + +A ++ + +      L+    + +++ L 
Sbjct: 612 LWMIKSGI--KFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALL 669

Query: 460 KSGDEE 465
           K G  +
Sbjct: 670 KGGRHD 675



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 174/383 (45%), Gaps = 38/383 (9%)

Query: 64  EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSF----MYNRACEMSRIKQNPSIIIDVVEA 119
           E+LHR  P+ S +     +  AL  + RHS      ++ R   ++R K  P++I      
Sbjct: 44  ELLHR--PTTSSI---VDLNRALSDAARHSPAVAISLFRRMVMVARPKVPPNLIT----- 93

Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
                         V+ + C +    + A   L ++       + I ++ +++  C+K  
Sbjct: 94  ------------YSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKR 141

Query: 180 MIAA-DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM-----KRHGCAAN 233
              A D  ++ M ++   P++ +Y  ++KG C+  R + A  L   M      R G   +
Sbjct: 142 TSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPD 201

Query: 234 LVAYSALLDGICRLG-SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +V+Y+ +++G+ R G  ++ A  L  +M  +G   SP+VVTY S+I        M +A  
Sbjct: 202 VVSYNTVINGLLREGRQLDTAYHLFDQMLDQG--LSPDVVTYNSIISALSKARAMDKAAV 259

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L RM   G  PNR+T ++L+ G+C  G  ++A  +  ++   G       Y++L+  L 
Sbjct: 260 VLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLC 319

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  R  EA K+F  M+  G KP+      ++      G +++   L + + + G     D
Sbjct: 320 KNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGI--QPD 377

Query: 413 SDIHSVLLLGLCRKNHSVEAAKL 435
             I ++ L+G   K+  V+ A L
Sbjct: 378 HYIFNI-LIGTYTKHGKVDDAML 399



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 145/319 (45%), Gaps = 4/319 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           ++G    V     I +   KAR  ++A  VL +M +    P+ I +N+++  +C  G   
Sbjct: 231 DQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPN 290

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  + K M    + PD+ TY +++   C  GR  +A  +F  M + G   N   Y  LL
Sbjct: 291 DAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLL 350

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G    GS+ +   LL  M + G    P+   +  +I  +   G + +A+ +  +M   G
Sbjct: 351 HGYATEGSLVKMHHLLDMMVRNG--IQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQG 408

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             P+ VT   ++   C+ G +D+A     ++++ G       + +L+  L    +  +AE
Sbjct: 409 LNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAE 468

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421
           +L  +M+  G+ P+ +  + ++  LC  G V     +++ + ++     V +  ++ L+ 
Sbjct: 469 ELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVIT--YNTLID 526

Query: 422 GLCRKNHSVEAAKLARFML 440
           G C      EAAKL   M+
Sbjct: 527 GYCLHGKVDEAAKLLEGMV 545



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 139/308 (45%), Gaps = 3/308 (0%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C  ++    ++ +LC++  +A  A  +   M   D++ D I YN +I  +C  G +  A 
Sbjct: 480 CPNNIFFNTLLNHLCKEGMVA-RAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAA 538

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L++GM L  + P+ +TY +MI G+C  GR+EDA  LF+ M   G    +V YS +L G+
Sbjct: 539 KLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGL 598

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            +      A EL   M K G     ++ TY  ++   C      +AL I   +  +    
Sbjct: 599 FQARRTAAAKELYLWMIKSG--IKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHL 656

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + +I      G  DEA  L   ++A G V +   Y  ++  L+    L+E + LF
Sbjct: 657 ENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLF 716

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
             +  +G   +    + ++ +L   G+V +       I++  F     +    VLL+   
Sbjct: 717 LSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVYLSKIDENNFSLEASTAESLVLLVSSG 776

Query: 425 RKNHSVEA 432
           + +  + A
Sbjct: 777 KYDQHINA 784



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 128/291 (43%), Gaps = 47/291 (16%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACG--LFKVM---KRHGCAANLVAYSALLDGICRLGSME 251
           P   + V + +   +A R   A    LF+ M    R     NL+ YS ++D   R+G ++
Sbjct: 49  PTTSSIVDLNRALSDAARHSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLD 108

Query: 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI-LDRMEALGCAPNRVTIS 310
            A   LG + + G   +   +T++ +++  C K    EA+ I L RM  LGC PN  + +
Sbjct: 109 LAFAALGRVIRSG--WTAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYT 166

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG-----CYSSLVVELVRTKR-LKEAEKLF 364
            L+KG C E    +A  L+  ++       G       Y++++  L+R  R L  A  LF
Sbjct: 167 ILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLF 226

Query: 365 SKMLASGVKPDGL-----------------ACSVMIRELCLGG--------QVLEGFCLY 399
            +ML  G+ PD +                 A  V++R +  G          +L G+C  
Sbjct: 227 DQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSS 286

Query: 400 -EDIEKIGFL-----SSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +  + IG         V+ D+  ++ L+  LC+   S+EA K+   M+K+
Sbjct: 287 GKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKR 337



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 6/195 (3%)

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
           M N  C+  RI+   S+   +       G V    +++ +F     A      +W+++  
Sbjct: 559 MINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSG 618

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            +FD+      YN ++   C+      A  + + + LID + +  T+  MI      GR 
Sbjct: 619 IKFDIG----TYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRH 674

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275
           ++A  LF  +   G   N+V Y  ++  +   G +E   +L   +EK G  C+ N     
Sbjct: 675 DEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNG--CTANSRMLN 732

Query: 276 SVIQIFCGKGMMKEA 290
           +++     KG +++A
Sbjct: 733 ALVGKLLQKGEVRKA 747


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 158/360 (43%), Gaps = 39/360 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            I N    A     ++ VL KM      P+   + ++I+ F  KG    A +    M   
Sbjct: 286 TIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIRE 345

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+++ Y +++ G C+   L DA  +F  M+ +GC  N+  YSAL+DG  + G ++ A
Sbjct: 346 GVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGA 405

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            E+   M   G  C PNVV YT ++ + C   M  +A  +++ M+   C PN VT +T I
Sbjct: 406 SEVWNWMITHG--CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFI 463

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR----------------- 356
           KG C  G +D A ++ D++   G   +   Y+ L+  L++ +R                 
Sbjct: 464 KGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIE 523

Query: 357 ------------------LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                             L EA +L  KM+  G KPD +  +++I   C  G+V     L
Sbjct: 524 LNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQL 583

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458
            + +    +   + +  ++ L+ G+C      EA    R ML + I       + +V HL
Sbjct: 584 MDRLSAGKWHPDIIA--YTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 156/338 (46%), Gaps = 32/338 (9%)

Query: 76  MGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI 135
           + + +F   A   S++H+   Y    E    ++    +  +++  K EG   S  +   +
Sbjct: 58  LALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISV 117

Query: 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195
                +A  + +A+    +M +F ++P   IYN+++    ++      + +   M    +
Sbjct: 118 IGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGM 177

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG------- 248
            P++ TY  ++K  C   R++ A  L   M   GC  + V+Y+ L+  +C+LG       
Sbjct: 178 EPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARE 237

Query: 249 -----------------------SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
                                  + E A +LL EM  +G D  PNV++YT++I      G
Sbjct: 238 LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGID--PNVISYTTIINALSDAG 295

Query: 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
            ++ +L +L +M A GC+PN  T ++LIKGF ++G   EA    D+++  G V +   Y+
Sbjct: 296 NVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYN 355

Query: 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +L+  L   + L +A  +F++M  +G  P+    S +I
Sbjct: 356 ALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALI 393



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 137/275 (49%), Gaps = 5/275 (1%)

Query: 115 DVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           D V  + +    GC  +V+    + +   KA   + A  V   M      P+ + Y  ++
Sbjct: 369 DAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMV 428

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
            + C       A  L++ M + +  P+ +T+ + IKG C +GR++ A  +F  M   GC 
Sbjct: 429 DVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCF 488

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            N   Y+ LLD + +      A  L+ +ME  G +   N+VTY ++I  +C  GM+ EAL
Sbjct: 489 PNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIEL--NLVTYNTIIYGYCCAGMLGEAL 546

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +L +M   G  P+ +T++ +I  +C +G ++ A QL+D++ AG        Y+SL+  +
Sbjct: 547 ELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGI 606

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
                ++EA     +ML+ G+ P+    +V++R L
Sbjct: 607 CTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 156/327 (47%), Gaps = 16/327 (4%)

Query: 85  ALQSSYRHSSF-------MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137
           AL++ YR   F       +YN   +    +    +I  +    K++G   +V    ++  
Sbjct: 130 ALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLK 189

Query: 138 -LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196
            LC+  R+ + A  +L +M      PD + Y  +I   C+ G +  A EL      +   
Sbjct: 190 ALCKNNRV-DGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELA-----MSFT 243

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P +  Y ++I G C     E+A  L   M   G   N+++Y+ +++ +   G++E +L +
Sbjct: 244 PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAV 303

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L +M   G  CSPN+ T+TS+I+ F  KG   EAL   DRM   G  PN V  + L+ G 
Sbjct: 304 LAKMFARG--CSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGL 361

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C + +L +A  + +++   G   +   YS+L+    +   L  A ++++ M+  G  P+ 
Sbjct: 362 CSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNV 421

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIE 403
           +A + M+  LC      + +CL E+++
Sbjct: 422 VAYTCMVDVLCRNSMFNQAYCLIENMQ 448



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 119/251 (47%), Gaps = 2/251 (0%)

Query: 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
            GC  +V     + ++  +  + N+A  ++  M   +  P+T+ +N  I+  C  G +  
Sbjct: 415 HGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDW 474

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A ++   MG    +P+  TY  ++       R  +A GL K M+  G   NLV Y+ ++ 
Sbjct: 475 AIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIY 534

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G C  G +  ALELLG+M   G    P+ +T   VI  +C +G +  A+ ++DR+ A   
Sbjct: 535 GYCCAGMLGEALELLGKMVVRG--TKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKW 592

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+ +  ++LI G C    ++EA   + ++++ G   +   ++ LV  L        A +
Sbjct: 593 HPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQ 652

Query: 363 LFSKMLASGVK 373
               +L SG +
Sbjct: 653 FLDAVLGSGFE 663


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 155/321 (48%), Gaps = 4/321 (1%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G +  V +   + N   K    ++A+ +  KM +  + P+ + YNN+I   C+ G +  A
Sbjct: 251 GIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEA 310

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
               + M    + P +ITY   I G     ++++A  + K M   G   N V Y+ L+DG
Sbjct: 311 YRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDG 370

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C++G++  AL++  +M  +G   SPN VT  S+IQ FC    + +A  +L+ M   G  
Sbjct: 371 YCKMGNISEALKIRDDMLSKG--ISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLP 428

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
            N+ + S +I   C++     A   I +++      + G  ++LV  L +  +  EA +L
Sbjct: 429 INQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVEL 488

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           + ++L  G  P+ +  + +I  LC  G + E   L  D+ + G +   D   ++ L+ G 
Sbjct: 489 WCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLV--FDRITYNTLISGC 546

Query: 424 CRKNHSVEAAKLARFMLKKRI 444
           C++    E  +L   M+KK I
Sbjct: 547 CKEGKVKEGFELKEEMVKKGI 567



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 152/302 (50%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KA    E + +LR M E  L  D I YN +I   C++G +    EL + M   
Sbjct: 507 LIHGLC-KAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKK 565

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PDI T+  ++ G CNA ++++A  L+   K++G   N+  Y  ++DG C+   +E  
Sbjct: 566 GIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEG 625

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL E+  +  +   N V Y S+I+ +C  G M  A  + D M++ G   +  T S+L+
Sbjct: 626 ENLLNELVSKKLEL--NSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLM 683

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C  G +D+A  L+D++   G + +  CY++++    +  ++ +   +  +M +  + 
Sbjct: 684 HGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIH 743

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    ++MI   C  G+  E   L  ++ + G L   D+  ++    GLC++    EA 
Sbjct: 744 PNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILP--DAVTYNAFTNGLCKEGKVEEAF 801

Query: 434 KL 435
           K+
Sbjct: 802 KV 803



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 167/344 (48%), Gaps = 10/344 (2%)

Query: 118 EAYK------EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           EAY+      +E    S+    V  N   K    +EA  VL++M E    P+ ++YN +I
Sbjct: 309 EAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLI 368

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
             +C+ G++  A ++   M    + P+ +T  S+I+GFC + ++  A  + + M   G  
Sbjct: 369 DGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLP 428

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            N  ++S +++ +C       AL  + EM     +  PN    T+++   C  G   EA+
Sbjct: 429 INQGSFSMVINWLCLKFRFVTALHFIREMLLR--NLRPNDGLLTTLVSGLCKAGKQGEAV 486

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            +  R+   G  PN VT + LI G C  GN+ E  +L+  ++  G V     Y++L+   
Sbjct: 487 ELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGC 546

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +  ++KE  +L  +M+  G++PD    ++++  LC   ++ E   L+ + +K G++ +V
Sbjct: 547 CKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNV 606

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455
            +  + V++ G C+ N   E   L   ++ K++ L     + ++
Sbjct: 607 YT--YGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLI 648



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 2/228 (0%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K+ G V +V    V+ +   KA    E   +L ++    L  ++++YN++IR +C  G+M
Sbjct: 598 KKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNM 657

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
            AA  L   M    +     TY S++ G CN G ++DA  L   M++ G   N+V Y+ +
Sbjct: 658 NAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTI 717

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G  +LG M +   +L EM     +  PN  TYT +I  FC  G  KEA  +L+ M   
Sbjct: 718 IGGYSKLGQMNKVNIVLQEMSSH--NIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEK 775

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
           G  P+ VT +    G C EG ++EA+++ D++ +G        Y++L+
Sbjct: 776 GILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLI 823



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 2/222 (0%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P+   Y  +I  +C+   +   + L+  +    L  + + Y S+I+ +C  G +  A  L
Sbjct: 604 PNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRL 663

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              MK  G   +   YS+L+ G+C +G ++ A  LL EM KEG    PNVV YT++I  +
Sbjct: 664 RDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEG--LLPNVVCYTTIIGGY 721

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
              G M +   +L  M +    PN+ T + +I GFC  G   EA +L++++   G +   
Sbjct: 722 SKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDA 781

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
             Y++    L +  +++EA K+  +M +  V  D +  + +I
Sbjct: 782 VTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLI 823



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 126/270 (46%), Gaps = 4/270 (1%)

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           L+P + T   ++     A  L+ +  ++  +   G   ++  +S +++  C+    + A+
Sbjct: 217 LFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAI 276

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
            L  +MEK G   +PNVVTY ++I   C  G + EA    ++M     +P+ +T S  I 
Sbjct: 277 GLFSKMEKLG--VAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFIN 334

Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           G      +DEA  ++ ++   G V +   Y++L+    +   + EA K+   ML+ G+ P
Sbjct: 335 GLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISP 394

Query: 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434
           + +  + +I+  C   Q+ +   + E  E IG    ++    S+++  LC K   V A  
Sbjct: 395 NSVTLNSLIQGFCKSDQIGQAENVLE--EMIGRGLPINQGSFSMVINWLCLKFRFVTALH 452

Query: 435 LARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464
             R ML + +      +  +V  L K+G +
Sbjct: 453 FIREMLLRNLRPNDGLLTTLVSGLCKAGKQ 482



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 115/234 (49%), Gaps = 5/234 (2%)

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  +F ++ + G   +L   + LL  + +   ++++ E+   +    G   P+V  ++++
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICL--GGIIPDVHLFSTM 262

Query: 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
           I  FC      +A+G+  +ME LG APN VT + +I G C  G LDEAY+  +K+V    
Sbjct: 263 INAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKV 322

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
             S   YS  +  L++ +++ EA  +  +M   G  P+ +  + +I   C  G + E   
Sbjct: 323 SPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALK 382

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL-QGPY 450
           + +D+   G   S +S   + L+ G C+ +   +A  +   M+ + + + QG +
Sbjct: 383 IRDDMLSKGI--SPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSF 434



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 2/186 (1%)

Query: 93  SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVL 152
           +S +YN       I  N +    + +  K  G ++S      + +      L ++A  +L
Sbjct: 640 NSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLL 699

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
            +M +  L P+ + Y  +I  + + G M   + +++ M   +++P+  TY  MI GFC  
Sbjct: 700 DEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKL 759

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G+ ++A  L   M   G   + V Y+A  +G+C+ G +E A ++  EM    G    + +
Sbjct: 760 GKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEM--SSGAVCLDEI 817

Query: 273 TYTSVI 278
           TYT++I
Sbjct: 818 TYTTLI 823



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 60/128 (46%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           +++  ++EG + +V     I     K    N+   VL++M   ++ P+   Y  +I  FC
Sbjct: 698 LLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFC 757

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           + G    A +L+  M    + PD +TY +   G C  G++E+A  +   M       + +
Sbjct: 758 KLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEI 817

Query: 236 AYSALLDG 243
            Y+ L+DG
Sbjct: 818 TYTTLIDG 825


>gi|242056929|ref|XP_002457610.1| hypothetical protein SORBIDRAFT_03g010260 [Sorghum bicolor]
 gi|241929585|gb|EES02730.1| hypothetical protein SORBIDRAFT_03g010260 [Sorghum bicolor]
          Length = 1089

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 166/331 (50%), Gaps = 14/331 (4%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           E +   R M E  +  D I Y  VI   C +G +      +  M  +D  P++ITY S++
Sbjct: 258 EGLREHRSMLEKGITADAINYTTVIDGLCREGSVEKVMGFLDEMEQVDAKPNLITYTSLV 317

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            GFC   RLEDA  + + +++ G   +   YS L+D +C++  ++RA  LL EME +G  
Sbjct: 318 GGFCKRDRLEDAFSIVRKLEQTGVVVDEYVYSILIDSLCKMEDLDRAFSLLTEMENKG-- 375

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
              +++TY ++I   C  G  ++AL I +     G A +  T STL+ G+   G++    
Sbjct: 376 IKASIITYNAIINGLCKAGHTEKALEISE-----GVAADNFTYSTLLHGYINRGDITGVM 430

Query: 327 QLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            + D++   G S+    C + L+       ++ +A  LF KM   G++P+ +    +I +
Sbjct: 431 AIKDRLEGSGISIDVVTC-NVLIKASFMINKVNDAWSLFHKMPEMGLRPNTITYHTIIDK 489

Query: 386 LCLGGQVLEGFCLYEDIEK-IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           LC   +V +   L+++ +K  GF ++V   +H  L+  LC       A ++   +++K+I
Sbjct: 490 LCKAEEVDKALELFDEYKKDSGFSTAV---VHECLIKALCYGGKVDMADQIFYDLVQKKI 546

Query: 445 WLQGPYVDKIVE-HLKKSGDEELITNLPKIG 474
            L      K++  H K+ G+  ++  + K+G
Sbjct: 547 RLNFFNCRKLIHAHFKRHGEHGVLDFVCKVG 577



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 128/273 (46%), Gaps = 13/273 (4%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM----WVLRKMPEFDLRPDTIIYNNVI 171
           V E     GC V  ++   I +   +   A   +     V R+   FD  P  +   +V+
Sbjct: 155 VFEVMTRRGCQVEDRVCSSIISGFSRTGKAGAGLDFYEKVKRQFSGFD--PGLVTLTSVV 212

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
                +G      ELM+ M    +  D + Y SM+ G+ + G L +     + M   G  
Sbjct: 213 HALGLEGRTGEVAELMQEMECKGMNADAVFYGSMVHGYMSRGFLMEGLREHRSMLEKGIT 272

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
           A+ + Y+ ++DG+CR GS+E+ +  L EME+   D  PN++TYTS++  FC +  +++A 
Sbjct: 273 ADAINYTTVIDGLCREGSVEKVMGFLDEMEQV--DAKPNLITYTSLVGGFCKRDRLEDAF 330

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
            I+ ++E  G   +    S LI   C   +LD A+ L+ ++   G  +S   Y++++  L
Sbjct: 331 SIVRKLEQTGVVVDEYVYSILIDSLCKMEDLDRAFSLLTEMENKGIKASIITYNAIINGL 390

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
            +    ++A +     ++ GV  D    S ++ 
Sbjct: 391 CKAGHTEKALE-----ISEGVAADNFTYSTLLH 418



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E+  +V + M  ++ + LC+   L  +A+ +   M +    P+ II+N+V+   C +G +
Sbjct: 714 EQSGLVDLAMYSIVVDGLCKGGYL-EKALDLCESMKKEGFHPNIIIHNSVLSGLCHQGCL 772

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  L   +   ++ P IITY  +I   C  G L+DA  LF+ M   G       Y+ L
Sbjct: 773 TEAFRLFDYLENSNMLPTIITYTILIGALCREGLLDDADQLFQKMSTKGIKPTTRVYNLL 832

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G C  G  E+ALEL+  +E+      P+  T  ++I   C KG  + AL   +     
Sbjct: 833 ISGYCNFGLTEKALELMSHLEELF--LLPDCFTLGAIINGLCLKGETEAALSFFNEYRHR 890

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEA 325
              P+ V   +L+KG   +G ++E+
Sbjct: 891 DMEPDFVGFMSLVKGLYAKGRMEES 915



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 142/312 (45%), Gaps = 47/312 (15%)

Query: 166 IYNNVIRLFCEKG-DMIAADELMKGM----GLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +++ ++R  C +G D   A EL+       G++ L P   TY  M+   C  G ++ A  
Sbjct: 98  LWDALLRRACARGCDPRHALELLSAAIEDHGMV-LSPS--TYRVMVVLLCAHGEVDCALR 154

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +F+VM R GC       S+++ G  R G     L+   +++++     P +VT TSV+  
Sbjct: 155 VFEVMTRRGCQVEDRVCSSIISGFSRTGKAGAGLDFYEKVKRQFSGFDPGLVTLTSVVHA 214

Query: 281 F-----------------CGKGMMKEAL-------GILDR---MEAL---------GCAP 304
                             C KGM  +A+       G + R   ME L         G   
Sbjct: 215 LGLEGRTGEVAELMQEMEC-KGMNADAVFYGSMVHGYMSRGFLMEGLREHRSMLEKGITA 273

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           + +  +T+I G C EG++++    +D++    +  +   Y+SLV    +  RL++A  + 
Sbjct: 274 DAINYTTVIDGLCREGSVEKVMGFLDEMEQVDAKPNLITYTSLVGGFCKRDRLEDAFSIV 333

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            K+  +GV  D    S++I  LC    +   F L  ++E  G  +S+ +  ++ ++ GLC
Sbjct: 334 RKLEQTGVVVDEYVYSILIDSLCKMEDLDRAFSLLTEMENKGIKASIIT--YNAIINGLC 391

Query: 425 RKNHSVEAAKLA 436
           +  H+ +A +++
Sbjct: 392 KAGHTEKALEIS 403



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 110/278 (39%), Gaps = 57/278 (20%)

Query: 4   FSLSRILSSSVNIKNSKIFALHFTTASPAE---RFYTHLQKNPN-NIEKTLATVKAKLDS 59
           FS+ R L  +  + +  ++++   +    E   R ++ L +  N  I+ ++ T  A ++ 
Sbjct: 330 FSIVRKLEQTGVVVDEYVYSILIDSLCKMEDLDRAFSLLTEMENKGIKASIITYNAIING 389

Query: 60  TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
            C      +       +    F ++ L   Y +   +        R+ +   I IDVV  
Sbjct: 390 LCKAGHTEKALEISEGVAADNFTYSTLLHGYINRGDITGVMAIKDRL-EGSGISIDVVT- 447

Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
                C V +K   +I  +       N+A  +  KMPE  LRP+TI Y+ +I   C+   
Sbjct: 448 -----CNVLIKASFMINKV-------NDAWSLFHKMPEMGLRPNTITYHTIIDKLCK--- 492

Query: 180 MIAADELMKGMGLIDLY------PDIITYVSMIKGFCNAGRLEDACGLFKVM-------- 225
              A+E+ K + L D Y         + +  +IK  C  G+++ A  +F  +        
Sbjct: 493 ---AEEVDKALELFDEYKKDSGFSTAVVHECLIKALCYGGKVDMADQIFYDLVQKKIRLN 549

Query: 226 ------------KRHGCAANLVAYSALLDGICRLGSME 251
                       KRHG          +LD +C++G ++
Sbjct: 550 FFNCRKLIHAHFKRHG-------EHGVLDFVCKVGELD 580


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 153/296 (51%), Gaps = 12/296 (4%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C   R KQ     ++ V+  K  G V  V    ++ + C K  + +EA  ++ +M E  L
Sbjct: 197 CRAGRTKQ----ALEFVDG-KMGGNVNRVVYNTLVSSFC-KQDMNDEAEKLVERMTEKGL 250

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGM---GLIDL-YPDIITYVSMIKGFCNAGRLE 216
            PD + +N+ I   C  G +  A  + + M   G + L  P+++T+  M+KGFC  G +E
Sbjct: 251 LPDVVTFNSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMME 310

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           +A  L + MK+ G   +L +Y+  L G+ R G +     +L EM + G    PN+ +Y  
Sbjct: 311 EARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENG--IEPNIYSYNI 368

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           V+   C   MM +A  ++D M + G  P+ VT +TL+ G+C +G + EA  ++++++  G
Sbjct: 369 VMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKG 428

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
              +    ++L+  L +  R  EAE++  KM     + D + C++++  LC  G++
Sbjct: 429 CHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGEL 484



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 146/292 (50%), Gaps = 10/292 (3%)

Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
           M +  + P+T  +N +I+  CE   +  A EL   M      P+  T   +++GFC AGR
Sbjct: 142 MIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGR 201

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
            + A  L  V  + G   N V Y+ L+   C+    + A +L+  M ++G    P+VVT+
Sbjct: 202 TKQA--LEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKG--LLPDVVTF 257

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALG----CAPNRVTISTLIKGFCVEGNLDEAYQLID 330
            S I   C  G + EA  I   M+  G      PN VT + ++KGFC EG ++EA  L++
Sbjct: 258 NSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVE 317

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
            +  GG+  S   Y++ ++ L+R  +L E   +  +M+ +G++P+  + ++++  LC   
Sbjct: 318 TMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNH 377

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +L+   L + +   G     D+  ++ LL G C K    EA  +   M++K
Sbjct: 378 MMLDARRLMDLMVSNGVYP--DTVTYTTLLHGYCSKGKVFEAKAILNEMIRK 427



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 154/366 (42%), Gaps = 58/366 (15%)

Query: 116 VVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +VE  K+ G  VS++     +  L    +L  E   VL +M E  + P+   YN V+   
Sbjct: 315 LVETMKKGGNFVSLESYNTWLLGLLRNGKLL-EGRSVLDEMVENGIEPNIYSYNIVMDGL 373

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           C    M+ A  LM  M    +YPD +TY +++ G+C+ G++ +A  +   M R GC  N 
Sbjct: 374 CRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNT 433

Query: 235 VAYSALLD-----------------------------------GICRLGSMERALELLGE 259
              + LL+                                   G+CR G +E+A E++ E
Sbjct: 434 YTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSE 493

Query: 260 MEKEGGDC--------------------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           M  +G +                      P+V+TYT++I   C  G ++EA      M A
Sbjct: 494 MWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMA 553

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
               P+ VT  T +  FC +G +  A +++  +   G   +   Y+SL++ L    ++ E
Sbjct: 554 KNLHPDSVTYDTFVLNFCKQGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFE 613

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
              L  +M   G+ PD    + MI  LC GG+  +   L  ++   G +S   S    +L
Sbjct: 614 MYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSPNVSSF-KIL 672

Query: 420 LLGLCR 425
           +   C+
Sbjct: 673 IKAFCK 678



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 146/315 (46%), Gaps = 13/315 (4%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD I Y  +I   C+ G +  A +    M   +L+PD +TY + +  FC  G++  A  +
Sbjct: 523 PDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRV 582

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            K M+R+GC+  L  Y++L+ G+   G +     L+ EM + G    P++ TY ++I   
Sbjct: 583 LKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERG--IHPDICTYNNMINCL 640

Query: 282 CGKGMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           C  G  K+A  +L  M   G  +PN  +   LIK FC  G+   A +L D V        
Sbjct: 641 CEGGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFD-VALSVCGHK 699

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              YS +  EL+   +L +A++LF   L   +         +I +LC  G++ +   L +
Sbjct: 700 EALYSLMFNELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQ 759

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460
            +   G+     S I   ++ GL ++ +  +A +L R M    + L+    DK  +   +
Sbjct: 760 KLIDKGYCFDHSSFI--PVIDGLSKRGNKQQADELGRIM---ELALE----DKTSDRTYR 810

Query: 461 SGDEELITNLPKIGG 475
           +G+      L K GG
Sbjct: 811 NGNSIFRRKLHKDGG 825



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 3/238 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  +L  EA     +M   +L PD++ Y+  +  FC++G + +A  ++K M   
Sbjct: 531 LINGLCKVGKLE-EAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDMERN 589

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
                + TY S+I G  + G++ +  GL   M+  G   ++  Y+ +++ +C  G  + A
Sbjct: 590 GCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDA 649

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL EM  + G  SPNV ++  +I+ FC  G  K A  + D   ++ C       S + 
Sbjct: 650 TSLLHEM-LDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSV-CGHKEALYSLMF 707

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
                 G L +A +L +  +    +S    Y  L+ +L +  RL +A  L  K++  G
Sbjct: 708 NELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKLIDKG 765



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 15/244 (6%)

Query: 89  SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANE 147
           S  + +F+ N  C+  +I    S  + V++  +  GC  +++    +I  L  K ++  E
Sbjct: 560 SVTYDTFVLN-FCKQGKI----SSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIF-E 613

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM---GLIDLYPDIITYVS 204
              ++ +M E  + PD   YNN+I   CE G    A  L+  M   G++   P++ ++  
Sbjct: 614 MYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVS--PNVSSFKI 671

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +IK FC +G  + AC LF V     C      YS + + +   G +  A EL  E   E 
Sbjct: 672 LIKAFCKSGDFKVACELFDV-ALSVCGHKEALYSLMFNELLAGGKLSDAKELF-EASLER 729

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
              S N + Y  +I   C  G + +A G+L ++   G   +  +   +I G    GN  +
Sbjct: 730 SLLSKNFM-YEDLIDKLCKDGRLDDAHGLLQKLIDKGYCFDHSSFIPVIDGLSKRGNKQQ 788

Query: 325 AYQL 328
           A +L
Sbjct: 789 ADEL 792



 Score = 38.1 bits (87), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 34/158 (21%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA-------------- 183
           LCE  +  +    +   + +  + P+   +  +I+ FC+ GD   A              
Sbjct: 640 LCEGGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHK 699

Query: 184 --------DELMKGMGLID------------LYPDIITYVSMIKGFCNAGRLEDACGLFK 223
                   +EL+ G  L D            L      Y  +I   C  GRL+DA GL +
Sbjct: 700 EALYSLMFNELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQ 759

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
            +   G   +  ++  ++DG+ + G+ ++A EL   ME
Sbjct: 760 KLIDKGYCFDHSSFIPVIDGLSKRGNKQQADELGRIME 797


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 144/279 (51%), Gaps = 8/279 (2%)

Query: 133 KVIFN----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           KV FN    +  KAR+ +EA+ VL++M      P  + YN++I  + + G +  A EL +
Sbjct: 284 KVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKE 343

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M +  + PD+ITY ++I G   AG+++ A G +  M R+GC  NL  Y+AL+      G
Sbjct: 344 EMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRG 403

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
                + +  ++   G    P+VVT+ +++ +F   G+  E  G+   M+  G  P R T
Sbjct: 404 KFPEMMAVFDDLRSAG--FVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDT 461

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
             +LI  +   G  D++ ++  +++  G       Y++++  L R  R ++AEKLF++M 
Sbjct: 462 YVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEME 521

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI--EKI 405
               +PD L+ S ++       ++ +   L EDI  EKI
Sbjct: 522 NLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKI 560



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 143/293 (48%), Gaps = 2/293 (0%)

Query: 113 IIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           ++ +V++ K +G  +       + + C +  L  EA  V  +M      PD + +N+++ 
Sbjct: 233 VVALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLD 292

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
           ++ +      A  ++K M L    P ++TY S+I  +   G L++A  L + M+  G   
Sbjct: 293 VYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQP 352

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +++ Y+ L+ G+ R G ++ A+    EM + G  C PN+ TY ++I++   +G   E + 
Sbjct: 353 DVITYTTLISGLDRAGKIDAAIGTYDEMLRNG--CKPNLCTYNALIKLHGVRGKFPEMMA 410

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D + + G  P+ VT +TL+  F   G   E   +  ++   G V     Y SL+    
Sbjct: 411 VFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYS 470

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           R     ++ +++ +M+ +G+ PD    + ++  L  GG+  +   L+ ++E +
Sbjct: 471 RCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENL 523



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 38/251 (15%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL--------------- 241
           PD   Y +++  F  A R  DA  +F+ M  +G    +V Y+ +L               
Sbjct: 176 PDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVA 235

Query: 242 -------DGI-------------CRLGSM-ERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
                  DGI             CR G++ + A ++  EM   G +  P+ VT+ S++ +
Sbjct: 236 LVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFE--PDKVTFNSLLDV 293

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +    M  EA+G+L  ME  GC P+ VT ++LI  +  +G L EA +L +++   G    
Sbjct: 294 YGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPD 353

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+  L R  ++  A   + +ML +G KP+    + +I+   + G+  E   +++
Sbjct: 354 VITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFD 413

Query: 401 DIEKIGFLSSV 411
           D+   GF+  V
Sbjct: 414 DLRSAGFVPDV 424



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 125/298 (41%), Gaps = 39/298 (13%)

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           L +++M + ++M E  + PD   YN V+      G    A++L   M  +D  PD ++Y 
Sbjct: 474 LFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYS 533

Query: 204 SMIKGFCNAGRLEDACGLF------KVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           S++  + NA +L+    L       K+   HG    LV  ++ ++    L   E+A   L
Sbjct: 534 SLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNN---LSETEKAFLEL 590

Query: 258 GEME------------------------------KEGGDCSPNVVTYTSVIQIFCGKGMM 287
           G                                  +G   + +  TY S++ ++   G  
Sbjct: 591 GRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDC 650

Query: 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
           ++   IL  +++ G  P+R + +T+I  +  +G + EA +L  ++ + G +     Y+  
Sbjct: 651 EKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIF 710

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
           V   V     +EA  L   M+  G KP+    + +++E C  G++ +      ++ ++
Sbjct: 711 VKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNLPQL 768



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 138/321 (42%), Gaps = 33/321 (10%)

Query: 97  YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMP 156
           YN   ++  ++     ++ V +  +  G V  V     +  +  +  L +E   V ++M 
Sbjct: 392 YNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMK 451

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           +    P+   Y ++I  +   G    + E+ K M    +YPDI TY +++      GR E
Sbjct: 452 KSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWE 511

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL-------------------- 256
            A  LF  M+   C  + ++YS+LL        +++   L                    
Sbjct: 512 QAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLV 571

Query: 257 --------LGEMEK---EGG--DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
                   L E EK   E G   CS ++    +++ ++    M+K+   IL  M+     
Sbjct: 572 LVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSIN 631

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
            +  T ++L+  +   G+ ++   ++ ++ + G+      Y++++    R  ++KEA +L
Sbjct: 632 LSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRL 691

Query: 364 FSKMLASGVKPDGLACSVMIR 384
           FS+M +SG+ PD +  ++ ++
Sbjct: 692 FSEMKSSGLIPDIVTYNIFVK 712


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 136/255 (53%), Gaps = 12/255 (4%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID--- 194
           LC+  R+      +LR+MPE   R   + YN +++  C++     A EL+  M  +D   
Sbjct: 129 LCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMM--VDGQD 186

Query: 195 --LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               PD+++Y  +I GF N G+++ A  LF  M   G + ++V Y+ ++DG+C+   ++R
Sbjct: 187 SSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDR 243

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A ++  +M ++G    PN VTY ++I   C    +  A G+  +M   G  P+ VT +T+
Sbjct: 244 AEDVFQQMVEKG--VKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTI 301

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G C    +D A  +  +++  G       Y++++  L + + + +AE +F +M+  GV
Sbjct: 302 IDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGV 361

Query: 373 KPDGLACSVMIRELC 387
           KPD L  +++I  LC
Sbjct: 362 KPDNLTYTIIIDGLC 376



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 152/307 (49%), Gaps = 5/307 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KA+  + A  V ++M +  ++P+   YN +I  +   G      + +K M   
Sbjct: 371 IIDGLC-KAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAH 429

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           DL PD+ TY  ++   C  G+  +A  LF  M R G   ++  Y  +L G  + G++   
Sbjct: 430 DLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEM 489

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +LL  M   G   SPN   + +VI  +  + M+ E + I  +M+  G +PN VT  TLI
Sbjct: 490 HDLLNLMVANG--ISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLI 547

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
              C  G +D+A    ++++  G   +   ++SLV  L    + ++ E+LF +ML  G++
Sbjct: 548 DALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIR 607

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  + ++  LC  G+V+E   L + +  +G    V S  ++ L+ G C  +   EA 
Sbjct: 608 PDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVIS--YNTLIDGHCFASRMDEAV 665

Query: 434 KLARFML 440
           KL   M+
Sbjct: 666 KLLDGMV 672



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 155/306 (50%), Gaps = 4/306 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           + P+  I+N VI  + ++  +     +   M    L P+++TY ++I   C  GR++DA 
Sbjct: 501 ISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAV 560

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
             F  M   G   N V +++L+ G+C +   E+  EL  EM  +G    P++V + +V+ 
Sbjct: 561 LQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQG--IRPDIVFFNTVLC 618

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C +G + EA  ++D M  +G  P+ ++ +TLI G C    +DEA +L+D +V+ G   
Sbjct: 619 NLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKP 678

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y++L+    +  R+  A  LF +ML  GV P     + ++  L   G+  E   LY
Sbjct: 679 NIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELY 738

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459
            ++ K   L S+ +  +S++L G C+ N   EA K+ + +    + L     + +++ L 
Sbjct: 739 VNMIKSRKLWSICT--YSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLF 796

Query: 460 KSGDEE 465
           K G +E
Sbjct: 797 KGGRKE 802



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 143/288 (49%), Gaps = 4/288 (1%)

Query: 157 EFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           E  + PD + YN +I   C+  ++  A+++ + M    + P+ +TY ++I G C A  ++
Sbjct: 218 EMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVD 277

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            A G+F+ M   G   + V Y+ ++DG+C+  +++RA  +  +M   G    P+ VTY +
Sbjct: 278 MAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRG--VKPDHVTYNT 335

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   C    + +A G+  +M   G  P+ +T + +I G C   ++D A  +  +++  G
Sbjct: 336 IIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKG 395

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
              + G Y+ L+   + T + +E  +   +M A  ++PD     +++  LC  G+  E  
Sbjct: 396 VKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEAR 455

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            L++ + + G   SV   I+ ++L G  +K    E   L   M+   I
Sbjct: 456 SLFDSMIRKGIKPSV--TIYGIMLHGYGKKGALSEMHDLLNLMVANGI 501



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 146/302 (48%), Gaps = 5/302 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+ NLC++ R+  EA  ++  M    L+PD I YN +I   C    M  A +L+ GM   
Sbjct: 616 VLCNLCKEGRVM-EARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSA 674

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P+I++Y +++ G+C AGR+++A  LF+ M R G    +  Y+ +L+G+ R G    A
Sbjct: 675 GLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEA 734

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            EL   M K     S  + TY+ ++  FC      EA  I   + ++    + +T + +I
Sbjct: 735 RELYVNMIKSRKLWS--ICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMI 792

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G    G  ++A  L   + A G V S   Y  +   L+    L+E + LFS M  SG  
Sbjct: 793 DGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTA 852

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           P+    + +IR+L   G++         +++  F  S+++   S+L+    R+ +   A 
Sbjct: 853 PNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNF--SLEASTTSMLISLFSREEYQQHAK 910

Query: 434 KL 435
            L
Sbjct: 911 SL 912



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 154/309 (49%), Gaps = 6/309 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+  +  NEA  +   M    ++P   IY  ++  + +KG +    +L+  M    + P
Sbjct: 445 LCKNGK-CNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISP 503

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +   + ++I  +     +++   +F  MK+ G + N+V Y  L+D +C+LG ++ A+   
Sbjct: 504 NHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQF 563

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M  EG   +PN V + S++   C     ++   +   M   G  P+ V  +T++   C
Sbjct: 564 NQMINEG--VTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLC 621

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
            EG + EA +LID +V  G       Y++L+       R+ EA KL   M+++G+KP+ +
Sbjct: 622 KEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIV 681

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437
           + + ++   C  G++   +CL+ ++ + G    V++  ++ +L GL R     EA +L  
Sbjct: 682 SYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVET--YNTILNGLFRSGRFSEARELYV 739

Query: 438 FMLKKR-IW 445
            M+K R +W
Sbjct: 740 NMIKSRKLW 748



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 124/251 (49%), Gaps = 3/251 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC KA+  + A  V ++M E  ++P+ + YN +I   C+  ++  A+ + + M   
Sbjct: 231 IIDGLC-KAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDK 289

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P  +TY ++I G C A  ++ A G+F+ M   G   + V Y+ ++DG+C+  ++++A
Sbjct: 290 GVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKA 349

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             +  +M  +G    P+ +TYT +I   C    +  A G+  +M   G  PN  T + LI
Sbjct: 350 EGVFQQMIDKG--VKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLI 407

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G+   G  +E  Q I ++ A         Y  L+  L +  +  EA  LF  M+  G+K
Sbjct: 408 HGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIK 467

Query: 374 PDGLACSVMIR 384
           P      +M+ 
Sbjct: 468 PSVTIYGIMLH 478



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 144/288 (50%), Gaps = 11/288 (3%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADE-LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           R D I+ N +++  C+   +  A   L++ M  +     +++Y +++KG C+  R E+A 
Sbjct: 116 RVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEAR 175

Query: 220 GLFKVM---KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            L  +M   +   C+ ++V+Y+ +++G    G +++A  L  EM       SP+VVTY +
Sbjct: 176 ELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM-----GVSPDVVTYNT 230

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   C    +  A  +  +M   G  PN VT +T+I G C    +D A  +  K+V  G
Sbjct: 231 IIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKG 290

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
              S   Y++++  L + + +  AE +F +M+  GVKPD +  + +I  LC    + +  
Sbjct: 291 VKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAE 350

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            +++ +   G     D+  +++++ GLC+      A  + + M+ K +
Sbjct: 351 GVFQQMIDKGV--KPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGV 396



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 169/386 (43%), Gaps = 45/386 (11%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           DV +   E+G    VK   V +N     LC KA+  + A  V +KM +  ++P  + YN 
Sbjct: 246 DVFQQMVEKG----VKPNNVTYNTIIDGLC-KAQEVDMAEGVFQKMVDKGVKPSNVTYNT 300

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I   C+   +  A+ + + M    + PD +TY ++I G C A  ++ A G+F+ M   G
Sbjct: 301 IIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKG 360

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEM----------------------------- 260
              + + Y+ ++DG+C+  S++RA  +  +M                             
Sbjct: 361 VKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVV 420

Query: 261 ----EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
               E    D  P+V TY  ++   C  G   EA  + D M   G  P+      ++ G+
Sbjct: 421 QRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGY 480

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
             +G L E + L++ +VA G   +   +++++    +   + E   +F KM   G+ P+ 
Sbjct: 481 GKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNV 540

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +    +I  LC  G+V +    +  +   G   + ++ + + L+ GLC  +   +  +L 
Sbjct: 541 VTYGTLIDALCKLGRVDDAVLQFNQMINEGV--TPNNVVFNSLVYGLCTVDKWEKVEELF 598

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSG 462
             ML + I     + + ++ +L K G
Sbjct: 599 LEMLNQGIRPDIVFFNTVLCNLCKEG 624



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 149/313 (47%), Gaps = 4/313 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +RPD + +N V+   C++G ++ A  L+  M  + L PD+I+Y ++I G C A R+++A 
Sbjct: 606 IRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAV 665

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M   G   N+V+Y+ LL G C+ G ++ A  L  EM ++G   +P V TY +++ 
Sbjct: 666 KLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKG--VTPGVETYNTILN 723

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                G   EA  +   M       +  T S ++ GFC     DEA+++   + +     
Sbjct: 724 GLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQL 783

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               ++ ++  L +  R ++A  LF+ + A+G+ P  +   ++   L   G + E  CL+
Sbjct: 784 DIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLF 843

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459
             +EK G  ++ +S + + L+  L  +     A      + +K   L+      ++    
Sbjct: 844 SVMEKSG--TAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFS 901

Query: 460 KSGDEELITNLPK 472
           +   ++   +LP+
Sbjct: 902 REEYQQHAKSLPE 914



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 129/274 (47%), Gaps = 3/274 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+  R+ ++A+    +M    + P+ +++N+++   C        +EL   M    + P
Sbjct: 550 LCKLGRV-DDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRP 608

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DI+ + +++   C  GR+ +A  L   M   G   ++++Y+ L+DG C    M+ A++LL
Sbjct: 609 DIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLL 668

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
             M   G    PN+V+Y +++  +C  G +  A  +   M   G  P   T +T++ G  
Sbjct: 669 DGMVSAG--LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLF 726

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
             G   EA +L   ++    + S   YS ++    +     EA K+F  + +  ++ D +
Sbjct: 727 RSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDII 786

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
             ++MI  L  GG+  +   L+  I   G + SV
Sbjct: 787 TFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSV 820



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 42/285 (14%)

Query: 197 PDIITYVSMIKGFCNAGRLE---DACG--------------------------------- 220
           PD  TY  +I  FC  GRLE    A G                                 
Sbjct: 82  PDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHV 141

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM-EKEGGDCSPNVVTYTSVIQ 279
           L + M   GC   +V+Y+ LL G+C     E A ELL  M + +   CSP+VV+Y  VI 
Sbjct: 142 LLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVIN 201

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            F  +G + +A  +   M   G +P+ VT +T+I G C    +D A  +  ++V  G   
Sbjct: 202 GFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKP 258

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y++++  L + + +  AE +F KM+  GVKP  +  + +I  LC    V     ++
Sbjct: 259 NNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVF 318

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           + +   G     D   ++ ++ GLC+     +A  + + M+ K +
Sbjct: 319 QQMIDRGV--KPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGV 361



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 115/260 (44%), Gaps = 13/260 (5%)

Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS----PN 270
           L DA  LF  +  H   A++ A + LL  + R      +   +    +   DCS    P+
Sbjct: 24  LHDALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPD 83

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA-YQLI 329
             TY+ VI  FC  G ++        +   G   + + ++ L+KG C    + EA + L+
Sbjct: 84  CCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLL 143

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML---ASGVKPDGLACSVMIREL 386
            ++   G       Y++L+  L   +R +EA +L   M+    S   PD ++ +++I   
Sbjct: 144 RQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGF 203

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
              GQV + + L+ ++       S D   ++ ++ GLC+      A  + + M++K +  
Sbjct: 204 FNEGQVDKAYSLFLEMG-----VSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKP 258

Query: 447 QGPYVDKIVEHLKKSGDEEL 466
                + I++ L K+ + ++
Sbjct: 259 NNVTYNTIIDGLCKAQEVDM 278


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 146/288 (50%), Gaps = 5/288 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA+ +L +M    L PDT  YN + R  C++G +  A E ++ +      PD+ITY  +
Sbjct: 132 DEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNIL 191

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           ++   N G+ ++       +   GC  N+V YS L+  +CR G +E ++ L+  M+++G 
Sbjct: 192 LRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKG- 250

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             +P+   Y  +I  FC +G +  A+  LD M   G  P+ V  +T++   C  GN D A
Sbjct: 251 -LTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHA 309

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
            ++  K+   G   +   Y++++  L  +     A  + S+ML+ G+ PD +  + +I  
Sbjct: 310 VEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISC 369

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           LC  G V E   L  D+    F  ++ S  +  +LLGLC K H ++ A
Sbjct: 370 LCRDGMVDEAIGLLADMLSGRFQPNIVS--YKTVLLGLC-KAHRIDDA 414



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 148/270 (54%), Gaps = 8/270 (2%)

Query: 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY--PDIITYVSMIKGFCNAGRLE 216
           D +PD I+   +I+ F    ++   D+  + MG+++ +  PD+  Y ++I GFC A R+E
Sbjct: 5   DYQPDVILCTKLIKGFFNSRNI---DKATRVMGILEKHGKPDVFAYNAVISGFCKANRIE 61

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
            A  +   MKR G + ++V ++ ++   C  G ++ AL++  E+ K+  +C P ++TYT 
Sbjct: 62  SAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDN-NCKPTLITYTI 120

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I+ +  +G + EAL +LD M + G  P+  T + + +G C EG +D A++ +  + + G
Sbjct: 121 LIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRG 180

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
                  Y+ L+  L+   +  E EK  S++ + G +P+ +  S++I  LC  G++ E  
Sbjct: 181 CKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESV 240

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
            L + +++ G   + D+  +  L+   CR+
Sbjct: 241 NLVKVMKEKGL--TPDAYCYDPLIAAFCRE 268



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 143/315 (45%), Gaps = 12/315 (3%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA----DELMKG 189
           VI   C+  R+ + A  VL +M      PD + +N +I  FC KG +  A    +EL+K 
Sbjct: 50  VISGFCKANRIES-AKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKD 108

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
               +  P +ITY  +I+ +   G +++A  L   M   G   +   Y+ +  G+C+ G 
Sbjct: 109 N---NCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGK 165

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           ++RA E +  +   G  C P+V+TY  +++    +G   E    +  + + GC PN VT 
Sbjct: 166 VDRAFEFVRTLNSRG--CKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTY 223

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
           S LI   C +G ++E+  L+  +   G      CY  L+    R  +L  A +    M+ 
Sbjct: 224 SILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMIC 283

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
            G  PD +  + ++  LC  G       ++  ++++G   +V S  ++ +L  L      
Sbjct: 284 DGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSS--YNTMLSALWSSGDR 341

Query: 430 VEAAKLARFMLKKRI 444
             A  +   ML K I
Sbjct: 342 YRALGMISQMLSKGI 356



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 142/270 (52%), Gaps = 6/270 (2%)

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           D  PD+I    +IKGF N+  ++ A  +  ++++HG   ++ AY+A++ G C+   +E A
Sbjct: 5   DYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANRIESA 63

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM-EALGCAPNRVTISTL 312
             +L  M+++G   SP+VVT+  +I  FCGKG +  AL + + + +   C P  +T + L
Sbjct: 64  KTVLDRMKRKG--FSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTIL 121

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I+ + +EG +DEA +L+D++++ G       Y+ +   L +  ++  A +    + + G 
Sbjct: 122 IEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGC 181

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           KPD +  ++++R L   G+  EG     +I   G   +V +  +S+L+  LCR     E+
Sbjct: 182 KPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVT--YSILISSLCRDGKIEES 239

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
             L + M +K +       D ++    + G
Sbjct: 240 VNLVKVMKEKGLTPDAYCYDPLIAAFCREG 269



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 125/246 (50%), Gaps = 8/246 (3%)

Query: 124 GCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           GC  +V    + I +LC   ++  E++ +++ M E  L PD   Y+ +I  FC +G +  
Sbjct: 215 GCEPNVVTYSILISSLCRDGKI-EESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDM 273

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
           A E +  M      PDI+ Y +++   C  G  + A  +F  +   GC  N+ +Y+ +L 
Sbjct: 274 AIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLS 333

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
            +   G   RAL ++ +M  +G D  P+V+TY S+I   C  GM+ EA+G+L  M +   
Sbjct: 334 ALWSSGDRYRALGMISQMLSKGID--PDVITYNSLISCLCRDGMVDEAIGLLADMLSGRF 391

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL----VRTKRLK 358
            PN V+  T++ G C    +D+A +++  ++  G   +   Y+ L+  +     RT+ ++
Sbjct: 392 QPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAME 451

Query: 359 EAEKLF 364
            A  L+
Sbjct: 452 LANSLY 457



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 140/282 (49%), Gaps = 12/282 (4%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVL--RKMPEFDLR---PDTIIYNN 169
           + V      GC   V    + +N+  +A L N+  W    + M E   R   P+ + Y+ 
Sbjct: 171 EFVRTLNSRGCKPDV----ITYNILLRA-LLNQGKWDEGEKWMSEIFSRGCEPNVVTYSI 225

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I   C  G +  +  L+K M    L PD   Y  +I  FC  G+L+ A      M   G
Sbjct: 226 LISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDG 285

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              ++V Y+ ++  +C+ G+ + A+E+ G++++ G  C PNV +Y +++      G    
Sbjct: 286 FLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVG--CPPNVSSYNTMLSALWSSGDRYR 343

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           ALG++ +M + G  P+ +T ++LI   C +G +DEA  L+  +++G    +   Y ++++
Sbjct: 344 ALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLL 403

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
            L +  R+ +A ++ + M+ +G +P+    +++I  +   G 
Sbjct: 404 GLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGS 445



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 70/143 (48%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           +++     E GC  +V     + +    +     A+ ++ +M    + PD I YN++I  
Sbjct: 310 VEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISC 369

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
            C  G +  A  L+  M      P+I++Y +++ G C A R++DA  +   M  +GC  N
Sbjct: 370 LCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPN 429

Query: 234 LVAYSALLDGICRLGSMERALEL 256
              Y+ L++GI   GS  +A+EL
Sbjct: 430 ETTYTLLIEGIGFSGSRTQAMEL 452



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 1/108 (0%)

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M A    P+ +  + LIKGF    N+D+A +++  +   G       Y++++    +  R
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGKPDVFA-YNAVISGFCKANR 59

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++ A+ +  +M   G  PD +  ++MI   C  G++     ++E++ K
Sbjct: 60  IESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLK 107


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 164/332 (49%), Gaps = 6/332 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
            +++ +  ++G   S+     I N LC+K R A  A  +L +M    L PDT  YN ++ 
Sbjct: 21  FEIMNSMADKGLKPSLFTYNAIINGLCKKGRYA-RAKGILIEMLNIGLSPDTTTYNTLLV 79

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C + +   A E+   M    + PD++++ S++  F     L+ A   F+ MK+ G   
Sbjct: 80  ESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVP 139

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           + V Y+ L+ G CR G+M  AL++  EM ++G  C  +V+ Y +++   C + M+ +A  
Sbjct: 140 DNVIYTVLMHGYCRNGNMLEALKIRDEMLEQG--CVLDVIAYNTILNGLCKEKMLTDADK 197

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           + D M   G  P+  T +TLI G C +GN+ +A  L   +           Y++L+    
Sbjct: 198 LFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFC 257

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +   +++A +L+  M++  + P+ +   ++I   C  G V E F L++ + + G   ++ 
Sbjct: 258 KVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLV 317

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           +   + ++ G CR   S +A +    M+ K +
Sbjct: 318 T--CNTVIKGYCRSGDSSKADEFLGRMIAKGV 347



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 145/283 (51%), Gaps = 8/283 (2%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           + YN +I  +C +G +  A E+M  M    L P + TY ++I G C  GR   A G+   
Sbjct: 2   VTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIE 61

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M   G + +   Y+ LL   CR  +   A E+ GEM ++G    P++V+++S++ +F   
Sbjct: 62  MLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQG--VVPDLVSFSSLMAVFSRN 119

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
             + +AL     M+  G  P+ V  + L+ G+C  GN+ EA ++ D+++  G V     Y
Sbjct: 120 RHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAY 179

Query: 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404
           ++++  L + K L +A+KLF +M+  G  PD    + +I   C  G + +   L+  + +
Sbjct: 180 NTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQ 239

Query: 405 IGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
                ++  DI  ++ L+ G C+     +A++L   M+ ++I+
Sbjct: 240 ----RNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIF 278



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 134/260 (51%), Gaps = 5/260 (1%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           +VS   +  +F+   + R  ++A+   R M +F L PD +IY  ++  +C  G+M+ A +
Sbjct: 106 LVSFSSLMAVFS---RNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALK 162

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
           +   M       D+I Y +++ G C    L DA  LF  M   G   +   ++ L+ G C
Sbjct: 163 IRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHC 222

Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
           + G+M +AL L G M +   +  P++V Y ++I  FC  G M++A  + D M +    PN
Sbjct: 223 QDGNMTKALSLFGTMTQR--NIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPN 280

Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
            +T   LI  +C  G++ EA++L D ++  G   +    ++++    R+    +A++   
Sbjct: 281 HITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLG 340

Query: 366 KMLASGVKPDGLACSVMIRE 385
           +M+A GV PD ++ + +I +
Sbjct: 341 RMIAKGVAPDHISYNTLIND 360



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 156/321 (48%), Gaps = 6/321 (1%)

Query: 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV 203
           L  EA  ++  M +  L+P    YN +I   C+KG    A  ++  M  I L PD  TY 
Sbjct: 16  LLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYN 75

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           +++   C      +A  +F  M R G   +LV++S+L+    R   +++AL    +M+K 
Sbjct: 76  TLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKF 135

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G    P+ V YT ++  +C  G M EAL I D M   GC  + +  +T++ G C E  L 
Sbjct: 136 G--LVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLT 193

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +A +L D++V  G++     +++L+    +   + +A  LF  M    +KPD +A + +I
Sbjct: 194 DADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLI 253

Query: 384 RELCLGGQVLEGFCLYED-IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
              C  G++ +   L++  I +  F + +    + +L+   C   H  EA +L   M++K
Sbjct: 254 DGFCKVGEMEKASELWDGMISRKIFPNHI---TYGILINAYCSVGHVSEAFRLWDVMIEK 310

Query: 443 RIWLQGPYVDKIVEHLKKSGD 463
            I       + +++   +SGD
Sbjct: 311 GIKPTLVTCNTVIKGYCRSGD 331



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 2/193 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E+GCV+ V     I N   K ++  +A  +  +M E    PD   +  +I   C+ G+M 
Sbjct: 169 EQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMT 228

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A  L   M   ++ PDI+ Y ++I GFC  G +E A  L+  M       N + Y  L+
Sbjct: 229 KALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILI 288

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
           +  C +G +  A  L   M ++G    P +VT  +VI+ +C  G   +A   L RM A G
Sbjct: 289 NAYCSVGHVSEAFRLWDVMIEKG--IKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKG 346

Query: 302 CAPNRVTISTLIK 314
            AP+ ++ +TLI 
Sbjct: 347 VAPDHISYNTLIN 359



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 107/209 (51%), Gaps = 4/209 (1%)

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +V Y+ L+   CR G +E A E++  M  +G    P++ TY ++I   C KG    A GI
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKG--LKPSLFTYNAIINGLCKKGRYARAKGI 58

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
           L  M  +G +P+  T +TL+   C   N  EA ++  +++  G V     +SSL+    R
Sbjct: 59  LIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSR 118

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
            + L +A   F  M   G+ PD +  +V++   C  G +LE   + +++ + G +  +D 
Sbjct: 119 NRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCV--LDV 176

Query: 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
             ++ +L GLC++    +A KL   M+++
Sbjct: 177 IAYNTILNGLCKEKMLTDADKLFDEMVER 205



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 109/205 (53%), Gaps = 9/205 (4%)

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           +VTY ++I  +C +G+++EA  I++ M   G  P+  T + +I G C +G    A  ++ 
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           +++  G       Y++L+VE  R     EA+++F +ML  GV PD ++ S ++       
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR 120

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
            + +    + D++K G +   D+ I++VL+ G CR  + +EA K+   ML+     QG  
Sbjct: 121 HLDQALVYFRDMKKFGLVP--DNVIYTVLMHGYCRNGNMLEALKIRDEMLE-----QGCV 173

Query: 451 VDKIVEHLKKSG--DEELITNLPKI 473
           +D I  +   +G   E+++T+  K+
Sbjct: 174 LDVIAYNTILNGLCKEKMLTDADKL 198


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 177/386 (45%), Gaps = 74/386 (19%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+  L+KM    + PD + YN+++   C+ G    A ++   M    L PDI TY +++
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLL 343

Query: 207 KGFCNAG-----------------------------------RLEDACGLFKVMKRHGCA 231
           +G+   G                                   ++++A  +F  M++HG  
Sbjct: 344 QGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLN 403

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ------------ 279
            N+V Y A++  +C+ GS++ A+    +M  EG   +PN++ YTS+I             
Sbjct: 404 PNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEG--LTPNIIVYTSLIHSLCIFDKWDKAE 461

Query: 280 ---------------IF--------CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
                          IF        C +G + E+  + D M  +G  PN +T STLI G+
Sbjct: 462 ELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGY 521

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C+ G +DEA +L+  + + G       Y++L+    R  R+ +A  LF +M++SGV P+ 
Sbjct: 522 CLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNI 581

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  +++++ L    +      LY  I K G  + ++   ++++L GLC+ N + EA ++ 
Sbjct: 582 ITYNIILQGLFHTRRTAAAKELYVGITKSG--TQLELSTYNIILHGLCKNNLTDEALRMF 639

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSG 462
           + +    + L+    + ++  L K G
Sbjct: 640 QNLCLTDLQLETRTFNIMIGALLKVG 665



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 176/394 (44%), Gaps = 52/394 (13%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V ++    ++  LC   R ++    VLR+M E    PD      +++  C++     A E
Sbjct: 120 VEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALE 179

Query: 186 LM------KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           L+      +G G     PD+++Y ++I GF   G  + A   +  M     + ++V YS+
Sbjct: 180 LLHMMADDRGGGSA---PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSS 236

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           ++  +C+  +M++A+E+L  M K G    PN +TY S++  +C     KEA+G L +M +
Sbjct: 237 IIAALCKGQAMDKAMEVLTTMVKNG--VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRS 294

Query: 300 LGCAPNRVTIS-----------------------------------TLIKGFCVEGNLDE 324
            G  P+ VT +                                   TL++G+  +G L E
Sbjct: 295 DGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVE 354

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
            + L+D +V  G       ++ L+    + +++ EA  +FSKM   G+ P+ +    +I 
Sbjct: 355 MHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIG 414

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            LC  G V +    +E +   G   ++   +++ L+  LC  +   +A +L   ML + I
Sbjct: 415 ILCKSGSVDDAMLYFEQMIDEGLTPNI--IVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472

Query: 445 WLQGPYVDKIVEHLKKSG----DEELITNLPKIG 474
            L   + + I+    K G     E+L   + +IG
Sbjct: 473 CLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIG 506



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 140/274 (51%), Gaps = 10/274 (3%)

Query: 135 IFNL--CEKARL--ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           +FN+  C  A+    +EAM V  KM +  L P+ + Y  VI + C+ G +   D ++   
Sbjct: 373 VFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSV--DDAMLYFE 430

Query: 191 GLID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +ID  L P+II Y S+I   C   + + A  L   M   G   N + +++++   C+ G
Sbjct: 431 QMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEG 490

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  + +L   M + G    PNV+TY+++I  +C  G M EA  +L  M ++G  P+ VT
Sbjct: 491 RVIESEKLFDLMVRIG--VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVT 548

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI G+C    +D+A  L  ++V+ G   +   Y+ ++  L  T+R   A++L+  + 
Sbjct: 549 YNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGIT 608

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            SG + +    ++++  LC      E   +++++
Sbjct: 609 KSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 642



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 122/268 (45%), Gaps = 3/268 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C+ ++    +I + C++ R+  E+  +   M    ++P+ I Y+ +I  +C  G M  A 
Sbjct: 473 CLNTIFFNSIIHSHCKEGRVI-ESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEAT 531

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L+  M  + + PD +TY ++I G+C   R++DA  LFK M   G + N++ Y+ +L G+
Sbjct: 532 KLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 591

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
                   A EL   + K G      + TY  ++   C   +  EAL +   +       
Sbjct: 592 FHTRRTAAAKELYVGITKSGTQLE--LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 649

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + +I      G  DEA  L     + G V +   Y  +   ++    L+E ++LF
Sbjct: 650 ETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 709

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQV 392
             M  +G   D    + ++REL   G++
Sbjct: 710 FSMEDNGCTVDSGMLNFIVRELLQRGEI 737



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 144/309 (46%), Gaps = 8/309 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC-EKGDMIAADEL 186
           +V    ++   C +A   +     L  + +   R + I +  +++  C +K    A D +
Sbjct: 86  TVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIV 145

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM---KRHGCAANLVAYSALLDG 243
           ++ M  +   PD+ +   ++KG C+  R ++A  L  +M   +  G A ++V+Y+ +++G
Sbjct: 146 LRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVING 205

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
             + G  ++A     EM       SP+VVTY+S+I   C    M +A+ +L  M   G  
Sbjct: 206 FFKEGDSDKAYSTYHEMLDR--RISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVM 263

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN +T ++++ G+C      EA   + K+ + G       Y+SL+  L +  R  EA K+
Sbjct: 264 PNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKI 323

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F  M   G++PD      +++     G ++E   L + + + G     D  + ++L+   
Sbjct: 324 FDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGI--HPDHHVFNILICAY 381

Query: 424 CRKNHSVEA 432
            ++    EA
Sbjct: 382 AKQEKVDEA 390



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 122/253 (48%), Gaps = 3/253 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC+   + ++AM    +M +  L P+ I+Y ++I   C       A+EL+  M   
Sbjct: 412 VIGILCKSGSV-DDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDR 470

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  + I + S+I   C  GR+ ++  LF +M R G   N++ YS L+DG C  G M+ A
Sbjct: 471 GICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEA 530

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +LL  M   G    P+ VTY ++I  +C    M +AL +   M + G +PN +T + ++
Sbjct: 531 TKLLSSMFSVG--MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIIL 588

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           +G         A +L   +   G+      Y+ ++  L +     EA ++F  +  + ++
Sbjct: 589 QGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 648

Query: 374 PDGLACSVMIREL 386
            +    ++MI  L
Sbjct: 649 LETRTFNIMIGAL 661



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 127/261 (48%), Gaps = 30/261 (11%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P + TY  +I   C AGRL+        + + G     + ++ LL G+C       A+++
Sbjct: 85  PTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCAPNRVTISTLI 313
           +     E   C P+V + T +++  C +   +EAL +L  M      G AP+ V+ +T+I
Sbjct: 145 VLRRMTELS-CMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVI 203

Query: 314 KGFCVEGNLDEAY----QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
            GF  EG+ D+AY    +++D+ ++   V+    YSS++  L + + + +A ++ + M+ 
Sbjct: 204 NGFFKEGDSDKAYSTYHEMLDRRISPDVVT----YSSIIAALCKGQAMDKAMEVLTTMVK 259

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI-EKIGFLSSVDSD-------IHSVLLL 421
           +GV P+ +  +           +L G+C  E   E IGFL  + SD        ++ L+ 
Sbjct: 260 NGVMPNCMTYN----------SILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMD 309

Query: 422 GLCRKNHSVEAAKLARFMLKK 442
            LC+   S EA K+   M K+
Sbjct: 310 YLCKNGRSTEARKIFDSMTKR 330


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 198/444 (44%), Gaps = 39/444 (8%)

Query: 24  LHFTTASPA-ERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLH--RCFPSQSQMGIRF 80
           LH  T   A + F + L++NPNN  K L    A      VI  L   + +P+ ++   + 
Sbjct: 35  LHSKTPEQALDTFTSVLKQNPNNPTKKLHLYSA------VIHYLTGAKVYPT-ARCLTKD 87

Query: 81  FIWAALQS--SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCV------------ 126
            I   LQS    R +S ++N   ++   K NPS+   ++ A+ E G V            
Sbjct: 88  LIQTLLQSCTPRRVNSLVFNALSQLRGSKFNPSVFGVLIIAFSEVGLVDEALRVYLKVGA 147

Query: 127 -VSVKMMKVIFN-LCEKARLANEAMWVL-RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
             +V+    + N L +K+    + MW L   M    L P  + YN ++   C +GD++ A
Sbjct: 148 FPAVQACNALLNGLLKKSSF--DIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRA 205

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
             L+  M    + P ++ Y ++I G C+  +L +A  +F+ MK  G   NL  Y+ L+DG
Sbjct: 206 KSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDG 265

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
            C+  ++++AL L   M  +G    PNVVT+  +I   C    +  A     +M   G  
Sbjct: 266 YCKTANVKQALHLYQGMLDDG--LQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVV 323

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN V  ++LI G+   GN  EA  L+ ++           YS L+    R   ++EA+ +
Sbjct: 324 PNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDI 383

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGG------QVLEGFCLYEDIEKIGFLSSVDSDIHS 417
             +M   GV  + +  + +I   C  G      ++ +    + D+ + G     D+  ++
Sbjct: 384 LKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRP--DALAYA 441

Query: 418 VLLLGLCRKNHSVEAAKLARFMLK 441
           V+L G     H  +   L   M+K
Sbjct: 442 VMLQGHLNAKHMADVMMLHADMIK 465



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 12/231 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+ + +KQ     + + +   ++G   +V    ++ +   K R    A     +M +F +
Sbjct: 267 CKTANVKQ----ALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGV 322

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ +++N++I  + + G+   A +L+  M    + PD+ TY  +IK  C  G +E+A  
Sbjct: 323 VPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADD 382

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL------LGEMEKEGGDCSPNVVTY 274
           + K M++ G  AN V Y++L+DG C+ G+ME+ALE+        +M + G    P+ + Y
Sbjct: 383 ILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNG--LRPDALAY 440

Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             ++Q       M + + +   M  +G  PN VT   + +G+   G L  A
Sbjct: 441 AVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVVRRGYQDNGYLKSA 491


>gi|414875981|tpg|DAA53112.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
          Length = 574

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 160/313 (51%), Gaps = 9/313 (2%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD---MIAADELMKGM 190
           VI   C+  +L  +A  V + +  + + P    YN +I  +C++G    M   D L+K M
Sbjct: 194 VISGFCKTGQL-RKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEM 252

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + PD++T+  +I G+C    +  A  +F+ M++ G  AN+V Y++L+ G+CR G +
Sbjct: 253 IQAGISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKV 312

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E +++L+ EME+ G  C   + T  SV+  FC KGMM EA G +D +   G  PN +T +
Sbjct: 313 EDSIKLVEEMEELGLACI--LSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYN 370

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370
           TL+ G+   G + EA    D +   G   +   Y+ L+     ++  +    L  +M   
Sbjct: 371 TLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEK 430

Query: 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430
           GVK D +  +V+I  LC  G+V +   L +++ ++G         ++ ++ G C K  + 
Sbjct: 431 GVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGL--EPKHVAYNTIINGFCEKGDA- 487

Query: 431 EAAKLARFMLKKR 443
           + A   R  ++KR
Sbjct: 488 QGAHEIRLRMEKR 500



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 6/233 (2%)

Query: 114 IDVVEAYKEEG--CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           I +VE  +E G  C++S  M  V+   C+K  +     WV   + +  ++P+ I YN ++
Sbjct: 316 IKLVEEMEELGLACILST-MNSVLNGFCKKGMMVEAEGWV-DGIAQRGMKPNVITYNTLV 373

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
             +   G M  A      M    + P++ TY  +I GF  +       GL   MK  G  
Sbjct: 374 DGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVK 433

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
           A++V Y+ L+  +C  G + +A++LL EM + G    P  V Y ++I  FC KG  + A 
Sbjct: 434 ADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVG--LEPKHVAYNTIINGFCEKGDAQGAH 491

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
            I  RME      N VT +  +K FC  G +DEA  ++++++  G V +   Y
Sbjct: 492 EIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITY 544



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 97/190 (51%), Gaps = 5/190 (2%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR---LGSMERA 253
           PD+ T+  +I GFC  G+L  A  + K +   G A ++  Y+ L+DG C+   +G M   
Sbjct: 186 PDLFTFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHV 245

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
             LL EM + G   SP+VVT+  +I  +C +  +  A+ +   M   G   N VT ++L+
Sbjct: 246 DALLKEMIQAG--ISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLV 303

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G C EG ++++ +L++++   G        +S++    +   + EAE     +   G+K
Sbjct: 304 SGLCREGKVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMK 363

Query: 374 PDGLACSVMI 383
           P+ +  + ++
Sbjct: 364 PNVITYNTLV 373



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 149/337 (44%), Gaps = 81/337 (24%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           +L++M +  + PD + +N +I  +C++ ++ AA ++ + M    +  +++TY S++ G C
Sbjct: 248 LLKEMIQAGISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLC 307

Query: 211 NAGRLEDACGLFKVMKRHGCA-----------------------------------ANLV 235
             G++ED+  L + M+  G A                                    N++
Sbjct: 308 REGKVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVI 367

Query: 236 AYSALLDGICRLGSME----------------------------------RALE-LLGEM 260
            Y+ L+DG  RLG M+                                  R++  LL EM
Sbjct: 368 TYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEM 427

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
           +++G     +VVTY  +I   C KG +++A+ +LD M  +G  P  V  +T+I GFC +G
Sbjct: 428 KEKG--VKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKG 485

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
           +   A+++  ++      ++   Y+  +    +  ++ EA  + ++ML  G+ P+ +   
Sbjct: 486 DAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRIT-- 543

Query: 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417
               E+   G + +G+    DI   G+ + V  ++ S
Sbjct: 544 ---YEIINSGMIEKGYV--PDIS--GYAADVSKNLTS 573



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 89/168 (52%), Gaps = 5/168 (2%)

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           SP++ T+  VI  FC  G +++A  +   + A G AP+  T +TLI G+C  G + + Y 
Sbjct: 185 SPDLFTFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYH 244

Query: 328 ---LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
              L+ +++  G       ++ L+    +   +  A K+F +M   G+  + +  + ++ 
Sbjct: 245 VDALLKEMIQAGISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVS 304

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            LC  G+V +   L E++E++G L+ + S ++SV L G C+K   VEA
Sbjct: 305 GLCREGKVEDSIKLVEEMEELG-LACILSTMNSV-LNGFCKKGMMVEA 350



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           +++  KE+G    V    V+   LC K  +  +A+ +L +M E  L P  + YN +I  F
Sbjct: 423 LLDEMKEKGVKADVVTYNVLIGALCCKGEV-RKAVKLLDEMVEVGLEPKHVAYNTIINGF 481

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
           CEKGD   A E+   M       +++TY   +K FC  G++++A  +   M   G   N 
Sbjct: 482 CEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNR 541

Query: 235 VAYSALLDGICRLG 248
           + Y  +  G+   G
Sbjct: 542 ITYEIINSGMIEKG 555


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 163/324 (50%), Gaps = 17/324 (5%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C  +  +M  + +LC   + A  A+ +LR+MP    RP+ + YN VI  FC +G + AA 
Sbjct: 113 CTTTFNIM--LRHLCSAGKPA-RALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAAL 165

Query: 185 ELMKGM---GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSAL 240
           ++M+ M   G I   P+  TY ++I G+C  GR+++A  +F  M   G      V Y+AL
Sbjct: 166 DIMREMRERGGI--APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNAL 223

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           + G C  G ++ AL     M + G   +  V TY  ++      G   EA  +++ M   
Sbjct: 224 IGGYCDQGKLDTALLYRDRMVERG--VAMTVATYNLLVHALFMDGRGTEAYELVEEMGGK 281

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
           G AP+  T + LI G C EGN+ +A ++ + +   G  ++   Y++L+  L +  +++E 
Sbjct: 282 GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQET 341

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
           +KLF + +  G++PD +  + +I      G +   F +  ++EK     + D   ++ L+
Sbjct: 342 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRI--APDDVTYNTLM 399

Query: 421 LGLCRKNHSVEAAKLARFMLKKRI 444
            GLC      EA KL   M ++ I
Sbjct: 400 RGLCLLGRVDEARKLIDEMTERGI 423



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 141/266 (53%), Gaps = 6/266 (2%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARL----ANEAMWVLRKMPEFDLRPDTIIYNN 169
           +D    Y++      V M    +NL   A        EA  ++ +M    L PD   YN 
Sbjct: 233 LDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNI 292

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I   C++G++  A E+ + M    +   ++TY ++I      G++++   LF    R G
Sbjct: 293 LINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRG 352

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
              +LV Y+AL++     G+++RA E++GEMEK+    +P+ VTY ++++  C  G + E
Sbjct: 353 IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK--RIAPDDVTYNTLMRGLCLLGRVDE 410

Query: 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349
           A  ++D M   G  P+ VT +TLI G+ ++G++ +A ++ ++++  G   +   Y++L+ 
Sbjct: 411 ARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 470

Query: 350 ELVRTKRLKEAEKLFSKMLASGVKPD 375
            L +  +  +AE +  +M+ +G+ PD
Sbjct: 471 GLCKNGQGDDAENMVKEMVENGITPD 496



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 162/348 (46%), Gaps = 49/348 (14%)

Query: 86  LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM--KVIFNLC 139
           L+   R ++  YN      C   R++      +D++   +E G +   +     VI   C
Sbjct: 137 LRQMPRPNAVTYNTVIAGFCSRGRVQA----ALDIMREMRERGGIAPNQYTYGTVISGWC 192

Query: 140 EKARLANEAMWVLRKM-PEFDLRPDTIIYNNVIRLFCEKGDM------------------ 180
           +  R+ +EA+ V  +M  + +++P+ ++YN +I  +C++G +                  
Sbjct: 193 KVGRV-DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMT 251

Query: 181 -----------------IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK 223
                              A EL++ MG   L PD+ TY  +I G C  G ++ A  +F+
Sbjct: 252 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 311

Query: 224 VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283
            M R G  A +V Y+AL+  + + G ++   +L  E  + G    P++V Y ++I     
Sbjct: 312 NMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRG--IRPDLVLYNALINSHST 369

Query: 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
            G +  A  I+  ME    AP+ VT +TL++G C+ G +DEA +LID++   G       
Sbjct: 370 SGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVT 429

Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391
           Y++L+        +K+A ++ ++M+  G  P  L  + +I+ LC  GQ
Sbjct: 430 YNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQ 477



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 45/255 (17%)

Query: 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277
           A  LF  M R         ++ +L  +C  G   RALELL +M +      PN VTY +V
Sbjct: 98  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR------PNAVTYNTV 151

Query: 278 IQIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           I  FC +G ++ AL I+  M E  G APN+ T  T+I G+C  G +DEA ++ D+++  G
Sbjct: 152 IAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKG 211

Query: 337 SVSS---------GG---------------------------CYSSLVVELVRTKRLKEA 360
            V           GG                            Y+ LV  L    R  EA
Sbjct: 212 EVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEA 271

Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
            +L  +M   G+ PD    +++I   C  G V +   ++E++ + G  ++V +  ++ L+
Sbjct: 272 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVT--YTALI 329

Query: 421 LGLCRKNHSVEAAKL 435
             L +K    E  KL
Sbjct: 330 YALSKKGQVQETDKL 344



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R+ +EA  ++ +M E  ++PD + YN +I  +  KGD+  A  +   M      P
Sbjct: 402 LCLLGRV-DEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 460

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            ++TY ++I+G C  G+ +DA  + K M  +G   +   Y +L++G+      ERA++
Sbjct: 461 TLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTT--EDERAID 516


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 165/351 (47%), Gaps = 7/351 (1%)

Query: 115 DVVEAYKE---EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171
           + +E Y+    EG   S+K    +     K R +   M +L++M +  LRP+   +   I
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICI 269

Query: 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA 231
           R+    G +  A E+ + M      PD++TY  +I   CNAG+LE+A  LF  MK +G  
Sbjct: 270 RVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHK 329

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
            + V Y  LLD     G ++   E   +ME +G    P+VVT+T ++ + C      EA 
Sbjct: 330 PDQVIYITLLDKFNDFGDLDTFKEFWSQMEADG--YMPDVVTFTILVDVLCKARDFDEAF 387

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
              D M   G  PN  T +TLI G    G +++A +L+  + + G   +   Y+  +   
Sbjct: 388 ATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYF 447

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            ++    +A + F KM A G+ P+ +AC+  +  L   G++ E   ++  + + G   + 
Sbjct: 448 GKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGL--AP 505

Query: 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462
           DS  +++++    +     EA  L   M++         V+ +++ L K+G
Sbjct: 506 DSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAG 556



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 159/333 (47%), Gaps = 12/333 (3%)

Query: 118 EAYK------EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           EAY+      +EGC   +    V+ + LC   +L N A  +  KM     +PD +IY  +
Sbjct: 280 EAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLEN-AKELFVKMKANGHKPDQVIYITL 338

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           +  F + GD+    E    M      PD++T+  ++   C A   ++A   F VM++ G 
Sbjct: 339 LDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGI 398

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
             NL  Y+ L+ G+ R G +E AL+LLG ME  G    P   TY   I  F   G   +A
Sbjct: 399 LPNLHTYNTLICGLLRAGRIEDALKLLGTMESVG--VQPTAYTYNIFIDYFGKSGETGKA 456

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           +   ++M+A G  PN V  +  +      G L EA  + + +   G       Y+ ++  
Sbjct: 457 VETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKC 516

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
             +  ++ EA  L S+M+ +G +PD +  + +I  L   G+V E + +++ ++ +    +
Sbjct: 517 YSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPT 576

Query: 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
           V +  ++ LL GL ++    +A +L   M++K+
Sbjct: 577 VVT--YNTLLSGLGKEGRVQKAIELFESMIEKK 607



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 154/314 (49%), Gaps = 5/314 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V+   ++ G V++      + +L  ++    EA+ V R+M    L+P    Y+ ++    
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALG 238

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +K D      L+K M  + L P++ T+   I+    AG++++A  +F+ M   GC  +LV
Sbjct: 239 KKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLV 298

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y+ L+D +C  G +E A EL  +M+  G    P+ V Y +++  F   G +        
Sbjct: 299 TYTVLIDALCNAGQLENAKELFVKMKANGH--KPDQVIYITLLDKFNDFGDLDTFKEFWS 356

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
           +MEA G  P+ VT + L+   C   + DEA+   D +   G + +   Y++L+  L+R  
Sbjct: 357 QMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAG 416

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV---D 412
           R+++A KL   M + GV+P     ++ I      G+  +    +E ++  G + ++   +
Sbjct: 417 RIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACN 476

Query: 413 SDIHSVLLLGLCRK 426
           + ++S+  +G  R+
Sbjct: 477 ASLYSLAEMGRLRE 490



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 137/288 (47%), Gaps = 2/288 (0%)

Query: 115  DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
            D+ +  K  GC        ++  +  K+    E   + ++M     +PD I YN VI   
Sbjct: 809  DLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSL 868

Query: 175  CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
             +  ++  A +    +   D  P   TY  +I G    GRLE+A  LF+ M  +GC  N 
Sbjct: 869  AKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNC 928

Query: 235  VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
              ++ L++G  ++G  E A +L   M  EG    P++ +YT ++   C  G + EAL   
Sbjct: 929  AIFNILINGYGKIGDTETACQLFKRMVNEG--IRPDLKSYTILVDCLCLAGRVDEALYYF 986

Query: 295  DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
            + +++ G  P+ +  + +I G      ++EA  L +++   G V     Y+SL++ L   
Sbjct: 987  NELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLA 1046

Query: 355  KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
              +++A++++ ++  +G++PD    + +IR   L       + +Y+++
Sbjct: 1047 GMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNM 1094



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 145/301 (48%), Gaps = 10/301 (3%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           +A+ +L  M    ++P    YN  I  F + G+   A E  + M    + P+I+   + +
Sbjct: 420 DALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASL 479

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
                 GRL +A  +F  ++ +G A + V Y+ ++    ++G ++ A+ LL EM + G  
Sbjct: 480 YSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG-- 537

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           C P+V+   S+I      G + EA  + DRM+ +  +P  VT +TL+ G   EG + +A 
Sbjct: 538 CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAI 597

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +L + ++      +   +++L+    +   ++ A K+FSKM     KPD L  + +I  L
Sbjct: 598 ELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV--LLLGLCRKNHSVEAAKLAR-FMLKKR 443
               +V   F  +  ++K     S+  D  ++  LL GL +     +A  +AR FM + R
Sbjct: 658 IKENKVNHAFWFFHQLKK-----SMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVR 712

Query: 444 I 444
            
Sbjct: 713 F 713



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 4/304 (1%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           +R D   Y  + +    +G +     ++  M       +  +Y  +I     +G   +A 
Sbjct: 153 IRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEAL 212

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +++ M   G   +L  YSAL+  + +    E  + LL EME  G    PNV T+T  I+
Sbjct: 213 EVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLG--LRPNVYTFTICIR 270

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
           +    G + EA  I  RM+  GC P+ VT + LI   C  G L+ A +L  K+ A G   
Sbjct: 271 VLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKP 330

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y +L+ +      L   ++ +S+M A G  PD +  ++++  LC      E F  +
Sbjct: 331 DQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATF 390

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459
           + + K G L ++ +  ++ L+ GL R     +A KL   M    +       +  +++  
Sbjct: 391 DVMRKQGILPNLHT--YNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFG 448

Query: 460 KSGD 463
           KSG+
Sbjct: 449 KSGE 452



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 112/214 (52%), Gaps = 3/214 (1%)

Query: 134  VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
            +I  L +  RL  EAM +  +M ++  +P+  I+N +I  + + GD   A +L K M   
Sbjct: 899  LIDGLAKVGRL-EEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNE 957

Query: 194  DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             + PD+ +Y  ++   C AGR+++A   F  +K  G   + +AY+ +++G+ +   ME A
Sbjct: 958  GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEA 1017

Query: 254  LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            L L  EM   G    P++ TY S++      GM+++A  + + ++  G  P+  T + LI
Sbjct: 1018 LALYNEMRNRG--IVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALI 1075

Query: 314  KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347
            +G+ +  N + AY +   ++  G   + G Y+ L
Sbjct: 1076 RGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 119/266 (44%), Gaps = 3/266 (1%)

Query: 147  EAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
            E  W + + M      PD   +N ++ +  + G +    EL K M      PD ITY  +
Sbjct: 805  EKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 206  IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
            I     +  L+ A   F  +           Y  L+DG+ ++G +E A+ L  EM   G 
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYG- 923

Query: 266  DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
             C PN   +  +I  +   G  + A  +  RM   G  P+  + + L+   C+ G +DEA
Sbjct: 924  -CKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEA 982

Query: 326  YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
                +++ + G       Y+ ++  L +++R++EA  L+++M   G+ PD    + ++  
Sbjct: 983  LYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLN 1042

Query: 386  LCLGGQVLEGFCLYEDIEKIGFLSSV 411
            L L G V +   +YE+++  G    V
Sbjct: 1043 LGLAGMVEQAKRMYEELQLAGLEPDV 1068



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 167/399 (41%), Gaps = 46/399 (11%)

Query: 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR 161
           EM R+++  ++        +E G         ++     K    +EA+ +L +M      
Sbjct: 484 EMGRLREAKTMF----NGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCE 539

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD I+ N++I    + G +  A ++   M  + L P ++TY +++ G    GR++ A  L
Sbjct: 540 PDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIEL 599

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
           F+ M    C+ N ++++ LLD  C+   +E AL++  +M     DC P+V+TY +VI   
Sbjct: 600 FESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVM--DCKPDVLTYNTVIYGL 657

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC------------------------ 317
             +  +  A     +++     P+ VTI TL+ G                          
Sbjct: 658 IKENKVNHAFWFFHQLKK-SMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVN 716

Query: 318 ------------VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
                       VE  +D+A    +++V  G          LV  L + KR   A ++F 
Sbjct: 717 RSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFD 776

Query: 366 KMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
           K     G+ P   + + +I EL       + + L++D++ +G   + D+   ++LL    
Sbjct: 777 KFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVG--CAPDAFTFNMLLAVHG 834

Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
           +     E  +L + M+ +R        + ++  L KS +
Sbjct: 835 KSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNN 873



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 121/264 (45%), Gaps = 2/264 (0%)

Query: 160  LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
            + P    YN +I    E      A +L K M  +   PD  T+  ++     +G++ +  
Sbjct: 784  ISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELF 843

Query: 220  GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
             L+K M    C  + + Y+ ++  + +  ++++AL+   ++     D  P   TY  +I 
Sbjct: 844  ELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLV--SSDFRPTPRTYGPLID 901

Query: 280  IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
                 G ++EA+ + + M   GC PN    + LI G+   G+ + A QL  ++V  G   
Sbjct: 902  GLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRP 961

Query: 340  SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
                Y+ LV  L    R+ EA   F+++ ++G+ PD +A + +I  L    ++ E   LY
Sbjct: 962  DLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALY 1021

Query: 400  EDIEKIGFLSSVDSDIHSVLLLGL 423
             ++   G +  + +    +L LGL
Sbjct: 1022 NEMRNRGIVPDLYTYNSLMLNLGL 1045



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 124/281 (44%), Gaps = 15/281 (5%)

Query: 170  VIRLFCEKGDMIAA----DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM 225
            ++R+ C+    + A    D+  K +G+    P + +Y  +I         E A  LFK M
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGI---SPTLASYNCLIGELLEVHYTEKAWDLFKDM 814

Query: 226  KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285
            K  GCA +   ++ LL    + G +    EL  EM      C P+ +TY  VI       
Sbjct: 815  KNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISR--RCKPDAITYNIVISSLAKSN 872

Query: 286  MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345
             + +AL     + +    P   T   LI G    G L+EA +L +++   G   +   ++
Sbjct: 873  NLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFN 932

Query: 346  SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405
             L+    +    + A +LF +M+  G++PD  + ++++  LCL G+V E    + +++  
Sbjct: 933  ILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKST 992

Query: 406  GFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            G    +D D   ++ ++ GL +     EA  L   M  + I
Sbjct: 993  G----LDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGI 1029


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 178/389 (45%), Gaps = 74/389 (19%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+  L+KM    + PD + YN+++   C+ G    A ++   M    L PDI TY +++
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLL 343

Query: 207 KGFCNAG-----------------------------------RLEDACGLFKVMKRHGCA 231
           +G+   G                                   ++++A  +F  M++HG  
Sbjct: 344 QGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLN 403

Query: 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ------------ 279
            N+V Y A++  +C+ GS++ A+    +M  EG   +PN++ YTS+I             
Sbjct: 404 PNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEG--LTPNIIVYTSLIHSLCIFDKWDKAE 461

Query: 280 ---------------IF--------CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
                          IF        C +G + E+  + D M  +G  PN +T STLI G+
Sbjct: 462 ELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGY 521

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C+ G +DEA +L+  + + G       Y++L+    R  R+ +A  LF +M++SGV P+ 
Sbjct: 522 CLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNI 581

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  +++++ L    +      LY  I K G  + ++   ++++L GLC+ N + EA ++ 
Sbjct: 582 ITYNIILQGLFHTRRTAAAKELYVGITKSG--TQLELSTYNIILHGLCKNNLTDEALRMF 639

Query: 437 RFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465
           + +    + L+    + ++  L K G  +
Sbjct: 640 QNLCLTDLQLETRTFNIMIGALLKVGRND 668



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 176/394 (44%), Gaps = 52/394 (13%)

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           V ++    ++  LC   R ++    VLR+M E    PD      +++  C++     A E
Sbjct: 120 VEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALE 179

Query: 186 LM------KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
           L+      +G G     PD+++Y ++I GF   G  + A   +  M     + ++V YS+
Sbjct: 180 LLHMMADDRGGGSA---PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSS 236

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           ++  +C+  +M++A+E+L  M K G    PN +TY S++  +C     KEA+G L +M +
Sbjct: 237 IIAALCKGQAMDKAMEVLTTMVKNG--VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRS 294

Query: 300 LGCAPNRVTIS-----------------------------------TLIKGFCVEGNLDE 324
            G  P+ VT +                                   TL++G+  +G L E
Sbjct: 295 DGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVE 354

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
            + L+D +V  G       ++ L+    + +++ EA  +FSKM   G+ P+ +    +I 
Sbjct: 355 MHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIG 414

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
            LC  G V +    +E +   G   ++   +++ L+  LC  +   +A +L   ML + I
Sbjct: 415 ILCKSGSVDDAMLYFEQMIDEGLTPNI--IVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472

Query: 445 WLQGPYVDKIVEHLKKSG----DEELITNLPKIG 474
            L   + + I+    K G     E+L   + +IG
Sbjct: 473 CLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIG 506



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 140/274 (51%), Gaps = 10/274 (3%)

Query: 135 IFNL--CEKARL--ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
           +FN+  C  A+    +EAM V  KM +  L P+ + Y  VI + C+ G +   D ++   
Sbjct: 373 VFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSV--DDAMLYFE 430

Query: 191 GLID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +ID  L P+II Y S+I   C   + + A  L   M   G   N + +++++   C+ G
Sbjct: 431 QMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEG 490

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            +  + +L   M + G    PNV+TY+++I  +C  G M EA  +L  M ++G  P+ VT
Sbjct: 491 RVIESEKLFDLMVRIG--VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVT 548

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            +TLI G+C    +D+A  L  ++V+ G   +   Y+ ++  L  T+R   A++L+  + 
Sbjct: 549 YNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGIT 608

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
            SG + +    ++++  LC      E   +++++
Sbjct: 609 KSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 642



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 131/278 (47%), Gaps = 3/278 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI  LC+   + ++AM    +M +  L P+ I+Y ++I   C       A+EL+  M   
Sbjct: 412 VIGILCKSGSV-DDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDR 470

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            +  + I + S+I   C  GR+ ++  LF +M R G   N++ YS L+DG C  G M+ A
Sbjct: 471 GICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEA 530

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +LL  M   G    P+ VTY ++I  +C    M +AL +   M + G +PN +T + ++
Sbjct: 531 TKLLSSMFSVG--MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIIL 588

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
           +G         A +L   +   G+      Y+ ++  L +     EA ++F  +  + ++
Sbjct: 589 QGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 648

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV 411
            +    ++MI  L   G+  E   L+  +   G +  V
Sbjct: 649 LETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 686



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 144/309 (46%), Gaps = 8/309 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC-EKGDMIAADEL 186
           +V    ++   C +A   +     L  + +   R + I +  +++  C +K    A D +
Sbjct: 86  TVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIV 145

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM---KRHGCAANLVAYSALLDG 243
           ++ M  +   PD+ +   ++KG C+  R ++A  L  +M   +  G A ++V+Y+ +++G
Sbjct: 146 LRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVING 205

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
             + G  ++A     EM       SP+VVTY+S+I   C    M +A+ +L  M   G  
Sbjct: 206 FFKEGDSDKAYSTYHEMLDR--RISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVM 263

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN +T ++++ G+C      EA   + K+ + G       Y+SL+  L +  R  EA K+
Sbjct: 264 PNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKI 323

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
           F  M   G++PD      +++     G ++E   L + + + G     D  + ++L+   
Sbjct: 324 FDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGI--HPDHHVFNILICAY 381

Query: 424 CRKNHSVEA 432
            ++    EA
Sbjct: 382 AKQEKVDEA 390



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 121/268 (45%), Gaps = 3/268 (1%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C+ ++    +I + C++ R+  E+  +   M    ++P+ I Y+ +I  +C  G M  A 
Sbjct: 473 CLNTIFFNSIIHSHCKEGRVI-ESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEAT 531

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           +L+  M  + + PD +TY ++I G+C   R++DA  LFK M   G + N++ Y+ +L G+
Sbjct: 532 KLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 591

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
                   A EL   + K G      + TY  ++   C   +  EAL +   +       
Sbjct: 592 FHTRRTAAAKELYVGITKSGTQLE--LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 649

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
              T + +I      G  DEA  L   + A G V     YS +   L+    L+E + LF
Sbjct: 650 ETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLF 709

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQV 392
             M  +G   +    + ++R+L   G +
Sbjct: 710 LSMEENGCTANSRMLNSIVRKLLQRGDI 737



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 127/261 (48%), Gaps = 30/261 (11%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P + TY  +I   C AGRL+        + + G     + ++ LL G+C       A+++
Sbjct: 85  PTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCAPNRVTISTLI 313
           +     E   C P+V + T +++  C +   +EAL +L  M      G AP+ V+ +T+I
Sbjct: 145 VLRRMTELS-CMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVI 203

Query: 314 KGFCVEGNLDEAY----QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
            GF  EG+ D+AY    +++D+ ++   V+    YSS++  L + + + +A ++ + M+ 
Sbjct: 204 NGFFKEGDSDKAYSTYHEMLDRRISPDVVT----YSSIIAALCKGQAMDKAMEVLTTMVK 259

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI-EKIGFLSSVDSD-------IHSVLLL 421
           +GV P+ +  +           +L G+C  E   E IGFL  + SD        ++ L+ 
Sbjct: 260 NGVMPNCMTYN----------SILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMD 309

Query: 422 GLCRKNHSVEAAKLARFMLKK 442
            LC+   S EA K+   M K+
Sbjct: 310 YLCKNGRSTEARKIFDSMTKR 330



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 1/120 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           ++  LC K  L +EA+ + + +   DL+ +T  +N +I    + G    A +L   +   
Sbjct: 622 ILHGLC-KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSAN 680

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L PD+ TY  M +     G LE+   LF  M+ +GC AN    ++++  + + G + RA
Sbjct: 681 GLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 740


>gi|125539402|gb|EAY85797.1| hypothetical protein OsI_07159 [Oryza sativa Indica Group]
          Length = 506

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 153/295 (51%), Gaps = 14/295 (4%)

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADEL---MKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217
           +P+T IYN +I+ + +KGD+  A ++   M+ M   D+ P ++TY ++I G C   ++++
Sbjct: 189 QPNTCIYNILIKYYVKKGDLGTAFQVFDEMRNMNCADVRPSLVTYSTLIGGLCRGAQMKE 248

Query: 218 ACGLFKVM-KRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           A  LF+ M ++     + + Y+ L+ G CRLG +E+A  + G M K   +C PN   Y +
Sbjct: 249 AFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRK--NECEPNAFNYAT 306

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I   C KG ++ A G+ + M   G  P+ V+ ++L+   C  GN+DE   L+ ++   G
Sbjct: 307 LINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKG 366

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396
             +    Y+ L+  L + +R+ EA  L  K+ + GV+ +  +  +++  LC  G++ +  
Sbjct: 367 CKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKAA 426

Query: 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL------ARFMLKKRIW 445
            L   +   GF+    +   ++LL+GLC      +A           FM + R W
Sbjct: 427 GLLGMMLGRGFVPHYAAS--NMLLIGLCDVGRVSDATVTLYGLVDTGFMPEARCW 479



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 129/258 (50%), Gaps = 3/258 (1%)

Query: 152 LRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMIKGFC 210
           +R M   D+RP  + Y+ +I   C    M  A EL + M   D + PD +TY  +I GFC
Sbjct: 218 MRNMNCADVRPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFC 277

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             G++E A  +F  M+++ C  N   Y+ L++G C+ G +E A  +  EM + G    P+
Sbjct: 278 RLGQVEKAQSIFGFMRKNECEPNAFNYATLINGHCKKGEVEAARGVFEEMIRSG--VQPD 335

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
            V+YTS++   C  G + E + ++  M   GC  + VT + L++G C +  + EA  L++
Sbjct: 336 AVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGLCKDRRIAEAVTLLE 395

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
           K+ + G   +   Y  ++  L     +++A  L   ML  G  P   A ++++  LC  G
Sbjct: 396 KLPSEGVQLNVASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNMLLIGLCDVG 455

Query: 391 QVLEGFCLYEDIEKIGFL 408
           +V +       +   GF+
Sbjct: 456 RVSDATVTLYGLVDTGFM 473



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 154/321 (47%), Gaps = 13/321 (4%)

Query: 59  STCVIEVLHRCFPSQSQMGIRFFIW--------AALQSSYRHSSFMYNRACEMSRIKQNP 110
           +TC+  +L + +  +  +G  F ++        A ++ S    S +    C  +++K+  
Sbjct: 191 NTCIYNILIKYYVKKGDLGTAFQVFDEMRNMNCADVRPSLVTYSTLIGGLCRGAQMKEAF 250

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
            +  D++E  K+      +    +I   C   ++  +A  +   M + +  P+   Y  +
Sbjct: 251 ELFEDMIE--KDRIVPDQLTYNLLIGGFCRLGQV-EKAQSIFGFMRKNECEPNAFNYATL 307

Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
           I   C+KG++ AA  + + M    + PD ++Y S++   C  G +++   L + M + GC
Sbjct: 308 INGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGC 367

Query: 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290
            A++V Y+ LL+G+C+   +  A+ LL ++  EG     NV +Y  V+   C  G M++A
Sbjct: 368 KADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEG--VQLNVASYRIVMNCLCSCGEMEKA 425

Query: 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
            G+L  M   G  P+    + L+ G C  G + +A   +  +V  G +    C++ L+  
Sbjct: 426 AGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTLYGLVDTGFMPEARCWARLIES 485

Query: 351 LVRTKRLKEAEKLFSKMLASG 371
           + R ++L+ + +L   ++A G
Sbjct: 486 VFRERKLRRSIELLDVLIAEG 506


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 178/377 (47%), Gaps = 40/377 (10%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           ++G V  V     I +   KAR  ++A +VLR+M +  + PD + YN +I  +   G   
Sbjct: 260 QKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWK 319

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            + ++ + M    L PD +T+ S +   C  GR +DA  +F+ M   G   ++V+YS LL
Sbjct: 320 ESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILL 379

Query: 242 DGI-----------------------------------CRLGSMERALELLGEMEKEGGD 266
            G                                     + G M+ A+ +  EM+ +G  
Sbjct: 380 HGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQG-- 437

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             PNVVTY+++I  FC  G + +A+    +M ++G  PN     +LI GFC+ G+L +A 
Sbjct: 438 VRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAK 497

Query: 327 QLIDKVVAGGSVSSGGC-YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           + I ++++ G        +SS++  L    R+ +A+ +F+ ++  G +P  +  + +I  
Sbjct: 498 EFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDG 557

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445
            CL G++ + F + + +  +G    V ++  + L+ G C+     +   L R ML K++ 
Sbjct: 558 YCLVGKMEKAFGVLDAMVSVGIEPDVVTN--NTLVSGYCKSGKIDDGLILFREMLHKKVK 615

Query: 446 LQGPYVDKIVEHLKKSG 462
                 + +++ L ++G
Sbjct: 616 PTTVTYNIVLDGLLRAG 632



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 133/249 (53%), Gaps = 6/249 (2%)

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           M+G G+    P+++TY ++I  FC  GRL DA   F  M   G   N   Y +L+ G C 
Sbjct: 433 MQGQGV---RPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCM 489

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
            G + +A E + EM  +G    PN+V ++S+I   C +G + +A  + + +  +G  P  
Sbjct: 490 HGDLVKAKEFISEMMSKGLH-RPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTI 548

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           VT ++LI G+C+ G +++A+ ++D +V+ G        ++LV    ++ ++ +   LF +
Sbjct: 549 VTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFRE 608

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           ML   VKP  +  ++++  L   G+      ++ ++   G  ++VD D + +LL GLCR 
Sbjct: 609 MLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSG--TAVDIDTYKILLKGLCRN 666

Query: 427 NHSVEAAKL 435
           + + EA  L
Sbjct: 667 DLTDEAITL 675



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 141/287 (49%), Gaps = 5/287 (1%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE-KGDMIAADE 185
           ++V+   ++ + C +AR  +     + ++    L+  TI     ++  C  K    A D 
Sbjct: 122 LTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDV 181

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG--CAANLVAYSALLDG 243
           L+  M  +   PD I+Y ++IK  C   R ++A  + + M + G  C+ ++V+++ ++ G
Sbjct: 182 LLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHG 241

Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
             + G + +A  L  EM ++G    P+V TY S++   C    M +A  +L +M   G  
Sbjct: 242 FFKQGEVSKACNLFNEMVQKG--VVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVE 299

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           P+ VT + +I G+   G+  E+ ++  K+ + G +     +SS +  L +  R K+AE++
Sbjct: 300 PDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEI 359

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410
           F  M   G  PD ++ S+++      G+  +   L+  +   G +S+
Sbjct: 360 FQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSN 406



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 136/286 (47%), Gaps = 14/286 (4%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LC + R+  +A  V   +     RP  + +N++I  +C  G M  A  ++  M  +
Sbjct: 519 IIHSLCIEGRVM-DAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSV 577

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + PD++T  +++ G+C +G+++D   LF+ M         V Y+ +LDG+ R G    A
Sbjct: 578 GIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAA 637

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            ++  EM   G   + ++ TY  +++  C   +  EA+ +  ++ A+ C  +   ++T+I
Sbjct: 638 KKMFHEMIDSG--TAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMI 695

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
                    +EA  L   +   G V +   Y  ++  L++   ++EA+ +FS M  SG  
Sbjct: 696 NALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCA 755

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG-FLSSVDSDIHSV 418
           P     + +IR L   G          DI K G ++S VD  I S+
Sbjct: 756 PSSRLLNDIIRMLLQKG----------DIVKAGYYMSKVDGTIISL 791



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 121/246 (49%), Gaps = 3/246 (1%)

Query: 200 ITYVSMIKGFCNAGRLEDACG-LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
           I   + +K  C+A R ++A   L   M    C  + ++Y+ ++  +C     + AL+++ 
Sbjct: 160 IQATTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQ 219

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
            M KEGG CSP+VV++ +VI  F  +G + +A  + + M   G  P+  T ++++   C 
Sbjct: 220 RMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCK 279

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
              +D+A  ++ ++V  G    G  Y++++     +   KE+ K+F KM + G+ PD + 
Sbjct: 280 ARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVT 339

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            S  +  LC  G+  +   +++ +   G +  + S  +S+LL G   +    +   L   
Sbjct: 340 FSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVS--YSILLHGYATEGRFADMNNLFHS 397

Query: 439 MLKKRI 444
           M  K I
Sbjct: 398 MADKGI 403



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 10/177 (5%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           + G  V +   K++     +  L +EA+ +  K+   D + D  I N +I    +     
Sbjct: 646 DSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRRE 705

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A++L   +    L P++ TY  MI+     G +E+A  +F  M++ GCA +    S LL
Sbjct: 706 EANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPS----SRLL 761

Query: 242 DGICRL----GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
           + I R+    G + +A   + ++  +G   S    T + ++ +F  KG  +E +  L
Sbjct: 762 NDIIRMLLQKGDIVKAGYYMSKV--DGTIISLEASTTSLLMSLFSSKGKHREQIKFL 816


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 156/307 (50%), Gaps = 17/307 (5%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A+ VLRK+    +  + ++Y+ +I   C++  +  A EL   M +  + PD++T+ ++I 
Sbjct: 172 ALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIY 231

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC  G+ ++A GLF  M       ++  ++ L+D +C+ GS +    +L  M KE    
Sbjct: 232 GFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQV 291

Query: 268 ---------------SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
                          +P+V +YT +I+  C   M+ EAL + + M   G  P++VT S+L
Sbjct: 292 NKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSL 351

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G C    +  A++L+D++ A G  +    Y+S +  L +  ++ +A  L  K+   G+
Sbjct: 352 IDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGI 411

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           +P+    +++I  LC  G+      +++D+   G+  +V +  +++++ GLC +    EA
Sbjct: 412 QPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWT--YNIMINGLCLEGLFDEA 469

Query: 433 AKLARFM 439
             L   M
Sbjct: 470 MTLLEKM 476



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 169/388 (43%), Gaps = 48/388 (12%)

Query: 74  SQMGIRFFIWAALQSSYRHSSFMYNRA---------CEMSRIKQNPSIIIDVVEAYKEEG 124
           SQM  +F ++  L   Y HS F  N             M R+  +PSII    E  K  G
Sbjct: 2   SQMS-QFSLFRTLH--YSHSKFNSNHVDVHDAISSFYRMLRMNPSPSII----EFNKILG 54

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
            +V          +    RL   A           + P  + +N VI  +C  G+M  A 
Sbjct: 55  SLVKSNNNNYPIAISLYHRLQLNA-----------ITPSIVTFNTVINCYCHLGEMDFAF 103

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            ++  +  +  +PD IT  ++IKG C  G++ +A      +   G   N V+Y  L++G+
Sbjct: 104 SVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGL 163

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
           C++G    AL++L ++  +G   + NVV Y+++I   C + ++ EA  +  +M     +P
Sbjct: 164 CKMGETRAALQVLRKI--DGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSP 221

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           + VT S LI GFC+ G   EA+ L  ++V          ++ LV  L +    KE + + 
Sbjct: 222 DVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVL 281

Query: 365 SKMLAS-----------------GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           + M+                    V PD  + +++I+ LC    V E   L+ ++   G 
Sbjct: 282 AVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGI 341

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
             + D   +S L+ GLC+      A +L
Sbjct: 342 --TPDKVTYSSLIDGLCKSERISHAWEL 367



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 151/326 (46%), Gaps = 22/326 (6%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I +LC K +L  EA  +  +M    + PD + ++ +I  FC  G    A  L   M L 
Sbjct: 194 IIDSLC-KEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLT 252

Query: 194 DLYPDIITYVSMIKGFCNAG-----------------RLEDACGLFKVMKRHGCAANLVA 236
           ++ PD+ T+  ++   C  G                 ++  A  +F ++ +     ++ +
Sbjct: 253 NINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHS 312

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y+ ++  +C++  ++ AL L  EM  +G   +P+ VTY+S+I   C    +  A  +LD+
Sbjct: 313 YTIIIKRLCKIKMVDEALSLFNEMRCKG--ITPDKVTYSSLIDGLCKSERISHAWELLDQ 370

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M A G   + +T ++ +   C    +D+A  L+ K+   G   +   Y+ L+  L +  R
Sbjct: 371 MHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGR 430

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
            + A+ +F  +L  G K      ++MI  LCL G   E   L E +E  G   + D   +
Sbjct: 431 FENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNG--CTPDVVTY 488

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKK 442
             ++  L + + + +A KL R M+ +
Sbjct: 489 ETIIRALFKNDENHKAEKLLREMIAR 514



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 128/273 (46%), Gaps = 6/273 (2%)

Query: 102 EMSRIKQNPSIII--DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159
           EM     NP +     +V+A  +EG     K   V+  + ++    N+A  V   + +  
Sbjct: 248 EMVLTNINPDVCTFNILVDALCKEGSTKETK--NVLAVMMKEVNQVNKAKHVFNIIGKRR 305

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           + PD   Y  +I+  C+   +  A  L   M    + PD +TY S+I G C + R+  A 
Sbjct: 306 VTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAW 365

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M   G  A+++ Y++ L  +C+   +++A+ L+ +++ +G    PN+ TY  +I 
Sbjct: 366 ELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQG--IQPNINTYNILID 423

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C +G  + A  I   +   G      T + +I G C+EG  DEA  L++K+   G   
Sbjct: 424 GLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTP 483

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
               Y +++  L +     +AEKL  +M+A G+
Sbjct: 484 DVVTYETIIRALFKNDENHKAEKLLREMIARGL 516



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 126/269 (46%), Gaps = 41/269 (15%)

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
           N   + DA   F  M R   + +++ ++ +L  + +  +    + +      +    +P+
Sbjct: 23  NHVDVHDAISSFYRMLRMNPSPSIIEFNKILGSLVKSNNNNYPIAISLYHRLQLNAITPS 82

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           +VT+ +VI  +C  G M  A  +L ++  +G  P+ +T++TLIKG C+ G + EA    D
Sbjct: 83  IVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHD 142

Query: 331 KVVAGG----SVS-----SGGC--------------------------YSSLVVELVRTK 355
            V+A G     VS     +G C                          YS+++  L + K
Sbjct: 143 HVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEK 202

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            + EA +L+S+M+   V PD +  S +I   C+ GQ  E F L+ ++     L++++ D+
Sbjct: 203 LVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEM----VLTNINPDV 258

Query: 416 --HSVLLLGLCRKNHSVEAAKLARFMLKK 442
              ++L+  LC++  + E   +   M+K+
Sbjct: 259 CTFNILVDALCKEGSTKETKNVLAVMMKE 287



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 3/172 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC+  R+++ A  +L +M       D I Y + +   C+   +  A  L+K +    + P
Sbjct: 355 LCKSERISH-AWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQP 413

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           +I TY  +I G C  GR E+A  +F+ +   G    +  Y+ +++G+C  G  + A+ LL
Sbjct: 414 NINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLL 473

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
            +ME  G  C+P+VVTY ++I+         +A  +L  M A G    +V I
Sbjct: 474 EKMEDNG--CTPDVVTYETIIRALFKNDENHKAEKLLREMIARGLLEEKVEI 523


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 188/423 (44%), Gaps = 78/423 (18%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFN-----LCEKARLANEAMWVLRKMPEFD-----LRPDTI 165
           +VE  +EEG V  +    V FN     LC++ ++  +A  +   M E D      RP++I
Sbjct: 239 LVEKMREEGLVPDI----VTFNSRISALCKEGKVL-DASRIFSDM-ELDEYLGLPRPNSI 292

Query: 166 IYNNVIRLFCE-----------------------------------KGDMIAADELMKGM 190
            YN +++ FC+                                    G  I A+ ++K M
Sbjct: 293 TYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQM 352

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               + P I +Y  ++ G C  G L DA  +  +MKR+G + + V Y  LL G C +G +
Sbjct: 353 IDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKV 412

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           + A  LL EM +   +C PN  T   ++      G + EA  +L +M   G   + VT +
Sbjct: 413 DAAKSLLQEMMRN--NCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCN 470

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG-----------------------CYSSL 347
            ++ G C  G LD+A +++  +   GS + G                         YS+L
Sbjct: 471 IIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTL 530

Query: 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           +  L +  R  EA+ LF++M+   ++PD LA ++ I   C  G++   F + +D+EK G 
Sbjct: 531 LNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGC 590

Query: 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELI 467
             S+++  ++ L+LGL  KN   E   L   M +K I       +  +++L + G  E  
Sbjct: 591 HKSLET--YNSLILGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDA 648

Query: 468 TNL 470
           TNL
Sbjct: 649 TNL 651



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 171/361 (47%), Gaps = 35/361 (9%)

Query: 133 KVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           KV++N      C + R  +++  ++ KM E  L PD + +N+ I   C++G ++ A  + 
Sbjct: 217 KVVYNTIVSSFCREGR-NDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIF 275

Query: 188 KGMGLIDLY-----PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
             M L D Y     P+ ITY  M+KGFC  G LEDA  LF+ ++ +    +L +Y+  L 
Sbjct: 276 SDMEL-DEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQ 334

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+ R G    A  +L +M  +G    P++ +Y  ++   C  GM+ +A  I+  M+  G 
Sbjct: 335 GLVRHGKFIEAETVLKQMIDKG--IGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGV 392

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
           +P+ VT   L+ G+C  G +D A  L+ +++    + +    + L+  L    R+ EAE+
Sbjct: 393 SPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEE 452

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG----------FLSSVD 412
           L  KM   G   D + C++++  LC  G++ +   + + +   G          ++  VD
Sbjct: 453 LLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVD 512

Query: 413 SDI-----------HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
             +           +S LL GLC+     EA  L   M+ +++       +  + H  K 
Sbjct: 513 DSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQ 572

Query: 462 G 462
           G
Sbjct: 573 G 573



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 155/333 (46%), Gaps = 9/333 (2%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           + +  V+   C + R      W+ + M    + P+T  +N +IR  C+   + AA EL  
Sbjct: 112 IYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFD 171

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            M      P+  T+  +++G+C AG  +    L   M+  G   N V Y+ ++   CR G
Sbjct: 172 EMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREG 231

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCA-P 304
             + + +L+ +M +EG    P++VT+ S I   C +G + +A  I   M   E LG   P
Sbjct: 232 RNDDSEKLVEKMREEG--LVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRP 289

Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
           N +T + ++KGFC  G L++A  L + +     + S   Y+  +  LVR  +  EAE + 
Sbjct: 290 NSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVL 349

Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
            +M+  G+ P   + ++++  LC  G + +   +   +++ G   S D+  +  LL G C
Sbjct: 350 KQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGV--SPDAVTYGCLLHGYC 407

Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457
                  A  L + M++    L   Y   I+ H
Sbjct: 408 SVGKVDAAKSLLQEMMRNNC-LPNAYTCNILLH 439



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 148/344 (43%), Gaps = 38/344 (11%)

Query: 80  FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139
           + IW  LQ   RH  F+                   V++   ++G   S+    ++ +  
Sbjct: 329 YNIW--LQGLVRHGKFIEAET---------------VLKQMIDKGIGPSIYSYNILMDGL 371

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
            K  + ++A  ++  M    + PD + Y  ++  +C  G + AA  L++ M   +  P+ 
Sbjct: 372 CKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNA 431

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            T   ++    N GR+ +A  L + M   G   + V  + ++DG+C  G +++A+E++  
Sbjct: 432 YTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKG 491

Query: 260 MEKEG---------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           M   G                      +C P+++TY++++   C  G   EA  +   M 
Sbjct: 492 MRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMM 551

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
                P+ +  +  I  FC +G +  A++++  +   G   S   Y+SL++ L    ++ 
Sbjct: 552 GEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIF 611

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           E   L  +M   G+ P+    +  I+ LC GG+V +   L +++
Sbjct: 612 EIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEM 655



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 160/384 (41%), Gaps = 61/384 (15%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A  +L++M   +  P+    N ++      G +  A+EL++ M       D +T   +
Sbjct: 413 DAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNII 472

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAA-----------------------NLVAYSALLD 242
           + G C +G L+ A  + K M+ HG AA                       +L+ YS LL+
Sbjct: 473 VDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLN 532

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C+ G    A  L  EM   G    P+ + Y   I  FC +G +  A  +L  ME  GC
Sbjct: 533 GLCKAGRFAEAKTLFAEMM--GEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGC 590

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
             +  T ++LI G  ++  + E + L+D++   G   +   Y++ +  L    ++++A  
Sbjct: 591 HKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATN 650

Query: 363 LFSKMLASGVKPD--------GLAC--------------------------SVMIRELCL 388
           L  +M+   + P+        G  C                          S+M  EL  
Sbjct: 651 LLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLA 710

Query: 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
            GQ+L+   L E +   GF   + + ++  L++ LC+K+    A+ +   M+ K      
Sbjct: 711 AGQLLKATELLEAVLDRGF--ELGTFLYKDLVVSLCKKDELEVASGILHKMIDKGYGFDP 768

Query: 449 PYVDKIVEHLKKSGDEELITNLPK 472
             +  +++ L K G+++   N  +
Sbjct: 769 AALMPVIDGLGKMGNKKEANNFAE 792



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 5/258 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E  C+  +     + N LC+  R A EA  +  +M    L+PD++ YN  I  FC++G +
Sbjct: 517 ENNCLPDLITYSTLLNGLCKAGRFA-EAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKI 575

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
            +A  ++K M     +  + TY S+I G     ++ +  GL   M+  G + N+  Y+  
Sbjct: 576 SSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNICTYNTA 635

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +  +C  G +E A  LL EM ++  + +PNV ++  +I  FC       A  + +   ++
Sbjct: 636 IQYLCEGGKVEDATNLLDEMMQK--NIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSI 693

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
            C       S +       G L +A +L++ V+  G       Y  LVV L +   L+ A
Sbjct: 694 -CGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVVSLCKKDELEVA 752

Query: 361 EKLFSKMLASGVKPDGLA 378
             +  KM+  G   D  A
Sbjct: 753 SGILHKMIDKGYGFDPAA 770



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 121/263 (46%), Gaps = 19/263 (7%)

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLGSMERALELLG 258
           + +S++  F  +  ++ A   F+ ++         +  Y+ LL+   R    ER +E + 
Sbjct: 77  SLLSVVSIFAKSNHIDKAFPQFQFVRSRFPENKPGIYLYNVLLESCIR----ERRVEFVS 132

Query: 259 EMEKEGGDC--SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
            + K+   C  SP   T+  +I+  C    +  A  + D M   GC PN  T   L++G+
Sbjct: 133 WLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGY 192

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G  D+  +L++ + + G + +   Y+++V    R  R  ++EKL  KM   G+ PD 
Sbjct: 193 CKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDI 252

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS--SVDSDIHSVLLLGLCRKNHSVEAAK 434
           +  +  I  LC  G+VL+   ++ D+E   +L     +S  ++++L G C+     +A  
Sbjct: 253 VTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKT 312

Query: 435 LARFMLKK---------RIWLQG 448
           L   + +           IWLQG
Sbjct: 313 LFESIRENDDLVSLQSYNIWLQG 335



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 119/348 (34%), Gaps = 125/348 (35%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--------------- 190
           +EA  +LRKM E     DT+  N ++   C  G++  A E++KGM               
Sbjct: 448 SEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSY 507

Query: 191 -GLID-------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
            GL+D         PD+ITY +++ G C AGR  +A  LF  M       + +AY+  + 
Sbjct: 508 IGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIH 567

Query: 243 GICRLGSMERALELLGEMEKEG---------------------------------GDCSP 269
             C+ G +  A  +L +MEK+G                                    SP
Sbjct: 568 HFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISP 627

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC------------ 317
           N+ TY + IQ  C  G +++A  +LD M     APN  +   LI  FC            
Sbjct: 628 NICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVF 687

Query: 318 ----------------------VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
                                   G L +A +L++ V+  G       Y  LVV L +  
Sbjct: 688 ETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVVSLCKKD 747

Query: 356 RL-----------------------------------KEAEKLFSKML 368
            L                                   KEA     KM+
Sbjct: 748 ELEVASGILHKMIDKGYGFDPAALMPVIDGLGKMGNKKEANNFAEKMM 795


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 172/361 (47%), Gaps = 35/361 (9%)

Query: 133 KVIFN-----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           KVI+N      C + R  +++  ++ KM E  L PD + +N+ I   C++G ++ A  + 
Sbjct: 217 KVIYNTIVSSFCREGR-NDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIF 275

Query: 188 KGMGLIDLY-----PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242
             M L D Y     P+ ITY  M+KGFC  G LEDA  LF+ ++ +   A+L +Y+  L 
Sbjct: 276 SDMEL-DEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQ 334

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+ R G    A  +L +M  +G    P++ +Y  ++   C  GM+ +A  I+  M+  G 
Sbjct: 335 GLVRHGKFIEAETVLKQMTDKG--IGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGV 392

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
            P+ VT   L+ G+C  G +D A  L+ +++    + +    + L+  L +  R+ EAE+
Sbjct: 393 CPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEE 452

Query: 363 LFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG----------FLSSVD 412
           L  KM   G   D + C++++  LC  G++ +   + + +   G          ++  VD
Sbjct: 453 LLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVD 512

Query: 413 SDI-----------HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
             +           +S LL GLC+     EA  L   M+ +++       +  + H  K 
Sbjct: 513 DSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQ 572

Query: 462 G 462
           G
Sbjct: 573 G 573



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 154/334 (46%), Gaps = 9/334 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           SV +  ++   C K R      W+ + M    + P T  +N +IR  C+   + AA EL 
Sbjct: 111 SVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELF 170

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
             M      P+  T+  +++G+C AG  +    L   M+  G   N V Y+ ++   CR 
Sbjct: 171 DEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCRE 230

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM---EALGCA- 303
           G  + + +++ +M +EG    P++VT+ S I   C +G + +A  I   M   E LG   
Sbjct: 231 GRNDDSEKMVEKMREEG--LVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288

Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
           PN +T + ++KGFC  G L++A  L + +     ++S   Y+  +  LVR  +  EAE +
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETV 348

Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
             +M   G+ P   + ++++  LC  G + +   +   +++ G     D+  +  LL G 
Sbjct: 349 LKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCP--DAVTYGCLLHGY 406

Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457
           C       A  L + M++    L   Y   I+ H
Sbjct: 407 CSVGKVDAAKSLLQEMMRNNC-LPNAYTCNILLH 439



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 119/265 (44%), Gaps = 25/265 (9%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           + A  +L++M   +  P+    N ++    + G +  A+EL++ M       D +T   +
Sbjct: 413 DAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNII 472

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAA-----------------------NLVAYSALLD 242
           + G C +G L+ A  + K M+ HG AA                       +L+ YS LL+
Sbjct: 473 VDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLN 532

Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
           G+C+ G    A  L  EM   G    P+ V Y   I  FC +G +  A  +L  ME  GC
Sbjct: 533 GLCKAGRFAEAKNLFAEMM--GEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGC 590

Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
             +  T ++LI G  ++  + E + L+D++   G   +   Y++ +  L   +++++A  
Sbjct: 591 HKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATN 650

Query: 363 LFSKMLASGVKPDGLACSVMIRELC 387
           L  +M+   + P+  +   +I   C
Sbjct: 651 LLDEMMQKNIAPNVFSFKYLIEAFC 675



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 146/344 (42%), Gaps = 38/344 (11%)

Query: 80  FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139
           + IW  LQ   RH  F+                   V++   ++G   S+    ++ +  
Sbjct: 329 YNIW--LQGLVRHGKFIEAET---------------VLKQMTDKGIGPSIYSYNILMDGL 371

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
            K  + ++A  ++  M    + PD + Y  ++  +C  G + AA  L++ M   +  P+ 
Sbjct: 372 CKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNA 431

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
            T   ++      GR+ +A  L + M   G   + V  + ++DG+C  G +++A+E++  
Sbjct: 432 YTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKG 491

Query: 260 MEKEG---------------------GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           M   G                      +C P+++TY++++   C  G   EA  +   M 
Sbjct: 492 MRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMM 551

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
                P+ V  +  I  FC +G +  A++++  +   G   S   Y+SL++ L    ++ 
Sbjct: 552 GEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIF 611

Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402
           E   L  +M   G+ P+    +  I+ LC G +V +   L +++
Sbjct: 612 EIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEM 655



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 123/263 (46%), Gaps = 19/263 (7%)

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLGSMERALELLG 258
           + +S++  F  +  ++ A   F++++        ++  Y+ LL+   +    ER +E + 
Sbjct: 77  SLLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIK----ERRVEFVS 132

Query: 259 EMEKEGGDC--SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
            + K+   C  +P   T+  +I+  C    +  A  + D M   GC PN  T   L++G+
Sbjct: 133 WLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGY 192

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C  G  D+  +L++ + + G + +   Y+++V    R  R  ++EK+  KM   G+ PD 
Sbjct: 193 CKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDI 252

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS--SVDSDIHSVLLLGLCRKNHSVEAAK 434
           +  +  I  LC  G+VL+   ++ D+E   +L     +S  ++++L G C+     +A  
Sbjct: 253 VTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKT 312

Query: 435 LARFMLKK---------RIWLQG 448
           L   + +           IWLQG
Sbjct: 313 LFESIRENDDLASLQSYNIWLQG 335



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 116/258 (44%), Gaps = 5/258 (1%)

Query: 122 EEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           E  C+  +     + N LC+  R A EA  +  +M    L+PD++ YN  I  FC++G +
Sbjct: 517 ENNCLPDLITYSTLLNGLCKAGRFA-EAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKI 575

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
            +A  ++K M     +  + TY S+I G     ++ +  GL   MK  G + N+  Y+  
Sbjct: 576 SSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTA 635

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           +  +C    +E A  LL EM ++  + +PNV ++  +I+ FC       A  + +   ++
Sbjct: 636 IQYLCEGEKVEDATNLLDEMMQK--NIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSI 693

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
            C       S +       G L +A +L++ V+  G       Y  LV  L +   L+ A
Sbjct: 694 -CGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVA 752

Query: 361 EKLFSKMLASGVKPDGLA 378
             +  KM+  G   D  A
Sbjct: 753 SGILHKMIDRGYGFDPAA 770



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 135/393 (34%), Gaps = 129/393 (32%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C + ++    S++ +++       C+ +     ++ +   K    +EA  +LRKM E   
Sbjct: 407 CSVGKVDAAKSLLQEMMR----NNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGY 462

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGM----------------GLID-------LYP 197
             DT+  N ++   C  G++  A E++KGM                GL+D         P
Sbjct: 463 GLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLP 522

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ITY +++ G C AGR  +A  LF  M       + VAY+  +   C+ G +  A  +L
Sbjct: 523 DLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVL 582

Query: 258 GEMEKEG---------------------------------GDCSPNVVTYTSVIQIFCGK 284
            +MEK+G                                    SPN+ TY + IQ  C  
Sbjct: 583 KDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEG 642

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFC--------------------------- 317
             +++A  +LD M     APN  +   LI+ FC                           
Sbjct: 643 EKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLYS 702

Query: 318 -------VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL------------- 357
                    G L +A +L++ V+  G       Y  LV  L +   L             
Sbjct: 703 LMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDR 762

Query: 358 ----------------------KEAEKLFSKML 368
                                 KEA     KM+
Sbjct: 763 GYGFDPAALMPVIDGLGKMGNKKEANSFADKMM 795


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 159/345 (46%), Gaps = 39/345 (11%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I +      +G V +      + N+  +    + A+ V   M +    P+T  YN +IR 
Sbjct: 385 IGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRG 444

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           +C  GD   A  ++  M      P ++TY  +IKG+C++G  + A  + ++MK +GC  +
Sbjct: 445 YCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPD 504

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
             +Y+ L+ G C++  ME A  +  EM   G    PN VTYT++I  +C    +  A  +
Sbjct: 505 EWSYTELISGFCKISKMELASGMFNEMMDRG--LCPNEVTYTALISGYCKDEKLDCAARM 562

Query: 294 LDRMEALGCAPNR-----------------------------------VTISTLIKGFCV 318
           L+RM+  GC PN                                    VT ST+I G C 
Sbjct: 563 LERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCN 622

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
            G +  A ++ +K+V  G + +   YSSL+  L +  R++EAE++FS++   G+ PD + 
Sbjct: 623 NGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVT 682

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
              MI    + G+V   F    ++   G   ++ +  + VL+ GL
Sbjct: 683 YVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQT--YDVLIKGL 725



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 161/335 (48%), Gaps = 11/335 (3%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+M RI+    I ID+    K++GC  +V       +L    R++  A+ +  +M    +
Sbjct: 344 CDMGRIEDAWKIFIDM----KKKGCKPNVY---TYTSLISGQRVSRMAIGLFHRMSRDGV 396

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+T+ YN ++ +  E  ++ +A  +   MG     P+  +Y  +I+G+C  G  E A  
Sbjct: 397 VPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMS 456

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           +   M +      LV Y+ ++ G C  G  + A+ +L  M+  G  C P+  +YT +I  
Sbjct: 457 MLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANG--CQPDEWSYTELISG 514

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           FC    M+ A G+ + M   G  PN VT + LI G+C +  LD A ++++++   G   +
Sbjct: 515 FCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPN 574

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y+ L+  L +      AE+L   ML   + PD +  S +I  LC  G +     ++ 
Sbjct: 575 VQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFN 634

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            + K G L ++ +  +S L+  L ++    EA ++
Sbjct: 635 KMVKHGCLPNLHT--YSSLIQALGQEGRVEEAEEM 667



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 120/245 (48%), Gaps = 15/245 (6%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L+P+ +IYN+VI   C+ G++  A+ ++  +    + PD  TY SMI G+C    L+ A 
Sbjct: 224 LQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAF 283

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            +F  M   GC  N   YS L++G+C  G +  AL+ + EM + G    P V T+T+ I 
Sbjct: 284 EIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHG--VLPTVHTFTAPIV 341

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
             C  G +++A  I   M+  GC PN  T ++LI G  V      A  L  ++   G V 
Sbjct: 342 ALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVS---RMAIGLFHRMSRDGVVP 398

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
           +   Y++L+  L+    +  A  +F+ M   G  P+  + + +IR          G+C  
Sbjct: 399 NTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIR----------GYCTI 448

Query: 400 EDIEK 404
            D EK
Sbjct: 449 GDTEK 453



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 185/405 (45%), Gaps = 79/405 (19%)

Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNN 169
           S ++D       EG   ++ +   + N LC+   +  +A  ++ K+ +  ++PDT  Y +
Sbjct: 210 STVMDRYHQILREGLQPNLLIYNSVINALCKDGNV-RDAESIINKVFKSGMKPDTFTYTS 268

Query: 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229
           +I  +C   D+ +A E+   M      P+  TY ++I G CN+GR+ +A      M RHG
Sbjct: 269 MILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHG 328

Query: 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289
               +  ++A +  +C +G +E A ++  +M+K+G  C PNV TYTS+I    G+ + + 
Sbjct: 329 VLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKG--CKPNVYTYTSLIS---GQRVSRM 383

Query: 290 ALGILDRM------------EAL-----------------------GCAPNRVTISTLIK 314
           A+G+  RM             AL                       GC PN  + + LI+
Sbjct: 384 AIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIR 443

Query: 315 GFCVEGNLDEAYQLIDKVVAG--------------GSVSSG---------------GC-- 343
           G+C  G+ ++A  ++  ++ G              G   SG               GC  
Sbjct: 444 GYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQP 503

Query: 344 ----YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399
               Y+ L+    +  +++ A  +F++M+  G+ P+ +  + +I   C   ++     + 
Sbjct: 504 DEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARML 563

Query: 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           E +++ G   +V +  ++VL+ GL ++N+   A +L + ML+++I
Sbjct: 564 ERMKRSGCRPNVQT--YNVLIHGLTKQNNFSGAEELCKVMLEEKI 606



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 122/273 (44%), Gaps = 25/273 (9%)

Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
           C   V    +I   C+  +L + A  +L +M     RP+   YN +I    ++ +   A+
Sbjct: 537 CPNEVTYTALISGYCKDEKL-DCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 595

Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
           EL K M    + PD++TY ++I G CN G +  A  +F  M +HGC  NL  YS+L+  +
Sbjct: 596 ELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQAL 655

Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
            + G +E A E+  E++K+G    P+ VTY  +I++    G +  A   L  M   GC P
Sbjct: 656 GQEGRVEEAEEMFSELKKQG--LIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQP 713

Query: 305 NRVTISTLIKGFCVE---------GNLDEAYQLIDKVVAGGSVS-------------SGG 342
              T   LIKG   E          N        D+++    +S             S  
Sbjct: 714 TLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQ 773

Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            Y +L+  L R+ R  EA  L+  M++    P+
Sbjct: 774 LYDALLSRLSRSGRWFEANNLYRSMVSQSQCPN 806


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 172/348 (49%), Gaps = 10/348 (2%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    +I   C+  R  + A+ +L +M E  ++P   IY  +I LF +  ++  A  L 
Sbjct: 230 TVTYSALISAFCKLGR-QDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLF 288

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M  +   PD+ TY  +I+G   AGR+++A   +  M+R GC  + V  + +++ + + 
Sbjct: 289 EEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKA 348

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEALGCAPNR 306
           G ++  L+L  EM      C PNVVTY ++I+ +F  K  + E     +RM+  G +P+ 
Sbjct: 349 GRLDDGLKLFEEMGV--SHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSP 406

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
            T S LI GFC    +++A  L++++   G       Y SL+  L + KR   A +LF +
Sbjct: 407 FTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQE 466

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +  +         +VMI+ L   G++ +   L++++ K+G   +V +  ++ L+ GL R 
Sbjct: 467 LKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYA--YNALMSGLARA 524

Query: 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE----ELITNL 470
               EA    R M +          + I+  L K+G      E++TN+
Sbjct: 525 CMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNM 572



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 175/381 (45%), Gaps = 11/381 (2%)

Query: 33  ERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSY 90
           ERF   L+  K   + E+ L  +  ++D   V EV+        +M  +FF WAA + +Y
Sbjct: 62  ERFIRILKIFKWGPDAERALEVLMLRVDHWLVREVMKTDVGVNVKM--QFFRWAAKKRNY 119

Query: 91  RH--SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
           +H  S++M    C +  ++Q   +   + E  +   CVV+   +  +  +   A++  +A
Sbjct: 120 QHDTSTYMALIHC-LELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKA 178

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIK 207
           + +  ++     +P    YN++I +   +G      EL   M       PD +TY ++I 
Sbjct: 179 ITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALIS 238

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            FC  GR + A  L   MK +G       Y+ ++    +L ++  AL L  EM      C
Sbjct: 239 AFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMY--C 296

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+V TYT +I+     G + EA      M+  GC P+ V ++ +I      G LD+  +
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLK 356

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           L +++     + +   Y++++  L  +K R+ E    F +M  SG+ P     S++I   
Sbjct: 357 LFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGF 416

Query: 387 CLGGQVLEGFCLYEDIEKIGF 407
           C   ++ +   L E++++ GF
Sbjct: 417 CKTNRIEKAMMLLEEMDEKGF 437



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 131/291 (45%), Gaps = 9/291 (3%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK--- 177
           + EGC     +M  + N   KA   ++ + +  +M      P+ + YN +I+   E    
Sbjct: 327 QREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSR 386

Query: 178 -GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236
             ++ +  E MKG G+    P   TY  +I GFC   R+E A  L + M   G      A
Sbjct: 387 VSEVFSWFERMKGSGI---SPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAA 443

Query: 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296
           Y +L+D + +    + A EL  E+++  G  S  V  Y  +I+     G + +A+ + D 
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSARV--YAVMIKHLGKAGRLDDAINLFDE 501

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           M  LGC PN    + L+ G      LDEA   + K+   G +     Y+ ++  L +T  
Sbjct: 502 MSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGG 561

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
              A ++ + M  S +KPD ++ + ++  L   G   E   L +++  +GF
Sbjct: 562 PHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGF 612



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 138/313 (44%), Gaps = 5/313 (1%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I ++   KE G   + K+  +I +L  K    + A+ +  +M     RPD   Y  +IR 
Sbjct: 250 IRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRG 309

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             + G +  A      M      PD +   +MI     AGRL+D   LF+ M    C  N
Sbjct: 310 LGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPN 369

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEK-EGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +V Y+ ++  +    S  R  E+    E+ +G   SP+  TY+ +I  FC    +++A+ 
Sbjct: 370 VVTYNTIIKAL--FESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMM 427

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           +L+ M+  G  P      +LI         D A +L  ++      SS   Y+ ++  L 
Sbjct: 428 LLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLG 487

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
           +  RL +A  LF +M   G  P+  A + ++  L     + E       +++ G L  ++
Sbjct: 488 KAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDIN 547

Query: 413 SDIHSVLLLGLCR 425
           S  ++++L GL +
Sbjct: 548 S--YNIILNGLAK 558



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I++ +   + GC  +V     + +   +A + +EA+  +RKM E    PD   YN ++  
Sbjct: 496 INLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNG 555

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             + G    A E++  M    + PD ++Y +++    +AG  E+A  L K M   G   +
Sbjct: 556 LAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYD 615

Query: 234 LVAYSALLDGICRL 247
           L+ YS++L+ I ++
Sbjct: 616 LITYSSILEAIGKV 629


>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
 gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
          Length = 637

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 142/281 (50%), Gaps = 4/281 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           ++A+ +   M +    P TI YN +IR  C  GD+  A +    M    L P+  TY ++
Sbjct: 309 HDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTL 368

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           + GF NAG L+ A  ++  MK  GC  N+V Y+ ++D +C+    ++A  L+ +M  +  
Sbjct: 369 VDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMD-- 426

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +C PN VT+ ++I   C  G +  AL +   M   GC PN  T + L+ G   EGN  +A
Sbjct: 427 NCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDA 486

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
           + ++ +++  G   S   Y++++  L +    K A  L  +M+  G++PD    + +I  
Sbjct: 487 FAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHA 546

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
            C  G+V    CL   +  +    +V +  +++L+  LC +
Sbjct: 547 YCKEGKVSIAACLLGQMNAVNCPRNVVA--YTILISELCNQ 585



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 168/349 (48%), Gaps = 20/349 (5%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C++ R+++    + + V         V      V+  LC + R+  E   V+ +M +  L
Sbjct: 203 CKLGRVEEARGFLAETVP--------VQASYNAVVHALCGEFRMW-EVFSVVNEMVQRGL 253

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
           +P+ + Y  ++  FC+  ++  A  ++  M  +   P+++T+ +++KGF   G++ DA  
Sbjct: 254 QPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALS 313

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           ++  M   G A + ++Y+ L+ G+C +G ++ AL+    M++      PN  TY++++  
Sbjct: 314 MWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNA--LLPNATTYSTLVDG 371

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           F   G +  A+ I + M++ GC PN V  + +I   C +   D+A  LIDK++      +
Sbjct: 372 FSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPN 431

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              +++L+  L    R+  A  +F  M  +G  P+    + ++  L   G   + F +  
Sbjct: 432 TVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVI 491

Query: 401 DIEKIGF-LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448
           ++   GF LS V  +     L  +C + H++        +L  R+ +QG
Sbjct: 492 EMLNNGFELSLVTYNTVINCLCQMCMRKHAM--------LLLGRMMVQG 532



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 2/239 (0%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           AM +  +M     +P+ ++Y N+I + C+K     A+ L+  M + +  P+ +T+ ++I 
Sbjct: 381 AMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIG 440

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
             C+ GR+  A  +F  M+R+GC  N   Y+ LL G+ R G+ + A  ++ EM   G + 
Sbjct: 441 RLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFEL 500

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           S  +VTY +VI   C   M K A+ +L RM   G  P+  T + +I  +C EG +  A  
Sbjct: 501 S--LVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAAC 558

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           L+ ++ A     +   Y+ L+ EL    +L  A     KML  G+ P+    +V++R +
Sbjct: 559 LLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAI 617



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 138/290 (47%), Gaps = 9/290 (3%)

Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210
           V   M +  + P+   YN +IR  C+   + AA +++  M     +PD +++ +++ G C
Sbjct: 144 VYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMC 203

Query: 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270
             GR+E+A G               +Y+A++  +C    M     ++ EM + G    PN
Sbjct: 204 KLGRVEEARGFLAET-----VPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRG--LQPN 256

Query: 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330
           VVTYT+++  FC    ++ A  IL RM ++GC PN +T + L+KGF  +G + +A  +  
Sbjct: 257 VVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWH 316

Query: 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390
            +V  G   S   Y+ L+  L     LK A   F+ M  + + P+    S ++      G
Sbjct: 317 WMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAG 376

Query: 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
            +     ++ +++  G   +V   +++ ++  LC+K    +A  L   ML
Sbjct: 377 DLDGAMLIWNEMKSSGCKPNV--VVYTNMIDVLCKKMMFDQAESLIDKML 424



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 112/228 (49%), Gaps = 2/228 (0%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
           K  GC  +V +   + ++  K  + ++A  ++ KM   +  P+T+ +N +I   C+ G +
Sbjct: 389 KSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRV 448

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
             A  +  GM     +P+  TY  ++ G    G  +DA  +   M  +G   +LV Y+ +
Sbjct: 449 GRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTV 508

Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
           ++ +C++   + A+ LLG M  +G    P+  T+ ++I  +C +G +  A  +L +M A+
Sbjct: 509 INCLCQMCMRKHAMLLLGRMMVQG--IQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAV 566

Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            C  N V  + LI   C +G L  A   + K++  G   +   ++ LV
Sbjct: 567 NCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLV 614



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 1/116 (0%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC+   +   AM +L +M    ++PD   +N +I  +C++G +  A  L+ 
Sbjct: 503 VTYNTVINCLCQMC-MRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLG 561

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
            M  ++   +++ Y  +I   CN G+L +A      M   G   N   ++ L+  I
Sbjct: 562 QMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAI 617


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 157/316 (49%), Gaps = 4/316 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ V ++M    + PD +  + ++   C+ G +  A ++   M +    PD+ +Y  M+
Sbjct: 307 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 366

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+   G L D   LF +M   G A +   ++ L+      G +++A+ +  EM   G  
Sbjct: 367 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHG-- 424

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+VVTY +VI   C  G M +A+   ++M   G AP++   + LI+GFC  G+L +A 
Sbjct: 425 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 484

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +LI +++  G       +SS++  L +  R+ +A+ +F   +  G+ PD +  S+++   
Sbjct: 485 ELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGY 544

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           CL G++ +   +++ +   G   +V   ++  L+ G C+     E   L R ML++ I  
Sbjct: 545 CLVGKMEKALRVFDAMVSAGIEPNV--VVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKP 602

Query: 447 QGPYVDKIVEHLKKSG 462
                  I++ L ++G
Sbjct: 603 STILYSIIIDGLFQAG 618



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 148/290 (51%), Gaps = 4/290 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A  + ++M +  + PD + YN+V+   C+   M  A+  ++ M    + P+  TY ++
Sbjct: 236 NKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNL 295

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G+ + G+ ++A  +FK M+RH    ++V  S L+  +C+ G ++ A ++   M  +G 
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  P+V +Y  ++  +  KG + +   + D M   G AP+  T + LIK +   G LD+A
Sbjct: 356 N--PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKA 413

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             + +++   G       Y +++  L R  ++ +A + F++M+  GV PD  A + +I+ 
Sbjct: 414 MIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQG 473

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            C  G +L+   L  +I   G    +D    S ++  LC+    ++A  +
Sbjct: 474 FCTHGSLLKAKELISEIMNNGM--HLDIVFFSSIINNLCKLGRVMDAQNI 521



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 134/290 (46%), Gaps = 6/290 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--GLIDL 195
            CE  R       +L + PE    PD   Y+ +++  C++G    AD+L++ M  G    
Sbjct: 156 FCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVC 215

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            P+++ Y ++I GF   G +  AC LFK M + G   +LV Y++++  +C+  +M++A  
Sbjct: 216 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 275

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
            L +M  +     PN  TY ++I  +   G  KEA+ +   M      P+ VT+S L+  
Sbjct: 276 FLRQMVNK--RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGS 333

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C  G + EA  + D +   G       Y+ ++        L +   LF  ML  G+ PD
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 393

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
               +V+I+     G + +   ++ ++   G    V +  +  ++  LCR
Sbjct: 394 FYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT--YRTVIAALCR 441



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 5/307 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC   ++ ++AM    +M +  + PD   YN +I+ FC  G ++ A EL+ 
Sbjct: 430 VTYRTVIAALCRIGKM-DDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELIS 488

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +    ++ DI+ + S+I   C  GR+ DA  +F +    G   + V YS L+DG C +G
Sbjct: 489 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVG 548

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ME+AL +   M   G    PNVV Y +++  +C  G + E L +   M   G  P+ + 
Sbjct: 549 KMEKALRVFDAMVSAG--IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTIL 606

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S +I G    G    A     ++   G       Y+ ++  L + +   EA  LF ++ 
Sbjct: 607 YSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELR 666

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           A  VK + +  + MI  +    +V E   L+  I +   + SV +  +S+++  L ++  
Sbjct: 667 AMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVT--YSIMITNLIKEGL 724

Query: 429 SVEAAKL 435
             EA  +
Sbjct: 725 VEEAEDM 731



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 132/274 (48%), Gaps = 3/274 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I NLC+  R+  +A  +        L PD ++Y+ ++  +C  G M  A  +   M   
Sbjct: 505 IINNLCKLGRVM-DAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSA 563

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+++ Y +++ G+C  GR+++   LF+ M + G   + + YS ++DG+ + G    A
Sbjct: 564 GIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPA 623

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
                EM + G   + ++ TY  V++         EA+ +   + A+    N +T++T+I
Sbjct: 624 KVKFHEMTESG--IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMI 681

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G      ++EA  L   +     V S   YS ++  L++   ++EAE +FS M  +G +
Sbjct: 682 DGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 741

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           P+    + ++REL    +++        I++  F
Sbjct: 742 PNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNF 775



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 121/244 (49%), Gaps = 3/244 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACG-LFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           +II    +++GFC A R ++A   L       GC  ++ +YS LL  +C  G   +A +L
Sbjct: 145 NIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 204

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M + G  CSPNVV Y +VI  F  +G + +A  +   M   G  P+ VT ++++   
Sbjct: 205 LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHAL 264

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    +D+A   + ++V    + +   Y++L+     T + KEA ++F +M    + PD 
Sbjct: 265 CKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDV 324

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  S+++  LC  G++ E   +++ +   G    V S  ++++L G   K   V+   L 
Sbjct: 325 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS--YNIMLNGYATKGCLVDMTDLF 382

Query: 437 RFML 440
             ML
Sbjct: 383 DLML 386



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 117/241 (48%), Gaps = 7/241 (2%)

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           L P   TY  ++     A R E A   F  + R G   N++  + LL+G C     + AL
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 166

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG---CAPNRVTIST 311
           ++L     E G C P+V +Y+ +++  C +G   +A  +L RM A G   C+PN V  +T
Sbjct: 167 DILLHRTPELG-CVPDVFSYSILLKSLCDQGKSGQADDLL-RMMAEGGAVCSPNVVAYNT 224

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           +I GF  EG++++A  L  ++V  G       Y+S+V  L + + + +AE    +M+   
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 284

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           V P+    + +I      GQ  E   +++++ +   L  V +   S+L+  LC+     E
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVT--LSMLMGSLCKYGKIKE 342

Query: 432 A 432
           A
Sbjct: 343 A 343



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 107/221 (48%), Gaps = 6/221 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + +  C + ++++   +   +V A  E   VV   ++      C+  R+ +E + + R
Sbjct: 538 SMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVN---GYCKIGRI-DEGLSLFR 593

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M +  ++P TI+Y+ +I    + G  + A      M    +  DI TY  +++G     
Sbjct: 594 EMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNR 653

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
             ++A  LFK ++      N++  + ++DG+ +   +E A +L   + +      P+VVT
Sbjct: 654 CFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR--SRLVPSVVT 711

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314
           Y+ +I     +G+++EA  +   M+  GC PN   ++ +++
Sbjct: 712 YSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVR 752



 Score = 46.2 bits (108), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 78/173 (45%), Gaps = 2/173 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G  + +    ++     K R  +EA+++ +++   +++ + I  N +I    +   + 
Sbjct: 632 ESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVE 691

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L   +    L P ++TY  MI      G +E+A  +F  M+  GC  N    + ++
Sbjct: 692 EAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVV 751

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             + +   + RA   L ++++   + S   +T   ++ +F  KG  +E +  L
Sbjct: 752 RELLKKNEIVRAGAYLSKIDER--NFSLEHLTTMLLVDLFSSKGTCREHIRFL 802


>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
 gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
          Length = 475

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 186/388 (47%), Gaps = 11/388 (2%)

Query: 23  ALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQ--MGIRF 80
           +L F ++SP        +  P++     A  K+ + S   ++ L     SQS   +    
Sbjct: 31  SLFFYSSSPHHHQQHKRELEPSDSHPN-ANTKSPIGSPSRVQKL---IASQSDPLLAKEI 86

Query: 81  FIWAALQSSYRHSSFMY-NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139
           F +A+ Q +++HS   Y     ++ R K   S I D++   K +   V+  +   I N+ 
Sbjct: 87  FDYASRQPNFQHSYSSYLILILKLGRAKYF-SFIDDLLTDLKSKNYPVTPTLFSYIINIY 145

Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI-AADELMKGMGLIDLYPD 198
            +A L ++A+ +   + +FD  P     N ++ +     + I  A +L K     D++P+
Sbjct: 146 GEANLPDKALKIFYTILKFDCNPSPKHLNGILEILVSHQNYIKPAFDLFKDAHTYDVFPN 205

Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
             +Y  +I+ FC  G++  A  LF  M +     ++ +Y  L+  +CR   +  A++LL 
Sbjct: 206 TKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLE 265

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +M  +G    P+ ++YT+++   C K  ++EA  +L RM+  GC P+ +  +T+I GFC 
Sbjct: 266 DMLNKG--YVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCR 323

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           EG   +A ++++ + + G + +   Y +LV  L       EA+    +M+  G  P    
Sbjct: 324 EGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMMMKGFSPHFAV 383

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIG 406
            + +I+  C  G++ E   + E++ K G
Sbjct: 384 SNALIKGFCNVGKIEEACGVVEELLKHG 411



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 103/195 (52%), Gaps = 3/195 (1%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC K+++ N A+ +L  M      PD + Y  ++   C K  +  A +L+  M +    P
Sbjct: 251 LCRKSQV-NGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNP 309

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           DII Y ++I GFC  GR  DAC + + M+ +GC  NLV+Y  L+ G+C  G  + A   L
Sbjct: 310 DIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHL 369

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            EM  +G   SP+     ++I+ FC  G ++EA G+++ +   G AP+  T   ++   C
Sbjct: 370 EEMMMKG--FSPHFAVSNALIKGFCNVGKIEEACGVVEELLKHGEAPHTETWVMMVSRIC 427

Query: 318 VEGNLDEAYQLIDKV 332
              +L    +++DKV
Sbjct: 428 EVDDLQRIGEILDKV 442



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 115/247 (46%), Gaps = 8/247 (3%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD-GICRLGSMERALE 255
           P + +Y+  I G  N    + A  +F  + +  C  +    + +L+  +     ++ A +
Sbjct: 135 PTLFSYIINIYGEANLP--DKALKIFYTILKFDCNPSPKHLNGILEILVSHQNYIKPAFD 192

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
           L  +      D  PN  +Y  +I+ FC  G +  A  + ++M      P+  +   L++ 
Sbjct: 193 LFKDAHTY--DVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQA 250

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C +  ++ A  L++ ++  G V     Y++L+  L R K+L+EA KL  +M   G  PD
Sbjct: 251 LCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPD 310

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA-AK 434
            +  + +I   C  G+ ++   + ED+E  G + ++ S  +  L+ GLC +    EA + 
Sbjct: 311 IIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVS--YRTLVGGLCDQGMFDEAKSH 368

Query: 435 LARFMLK 441
           L   M+K
Sbjct: 369 LEEMMMK 375



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI   C + R A +A  VL  M      P+ + Y  ++   C++G    A   ++ M + 
Sbjct: 317 VILGFCREGR-AMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMMMK 375

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              P      ++IKGFCN G++E+ACG+ + + +HG A +   +  ++  IC +  ++R 
Sbjct: 376 GFSPHFAVSNALIKGFCNVGKIEEACGVVEELLKHGEAPHTETWVMMVSRICEVDDLQRI 435

Query: 254 LELLGEMEK 262
            E+L +++K
Sbjct: 436 GEILDKVKK 444



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 83/210 (39%), Gaps = 41/210 (19%)

Query: 236 AYSALLDGICRLGSMERAL---ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           +YS+ L  I +LG  +      +LL +++ +    +P + +Y  +I I+    +  +AL 
Sbjct: 99  SYSSYLILILKLGRAKYFSFIDDLLTDLKSKNYPVTPTLFSY--IINIYGEANLPDKALK 156

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
           I   +    C P+   ++ +++      N                               
Sbjct: 157 IFYTILKFDCNPSPKHLNGILEILVSHQNY------------------------------ 186

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
               +K A  LF       V P+  + +++IR  CL GQ+   + L+  + K   +  V+
Sbjct: 187 ----IKPAFDLFKDAHTYDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVE 242

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
           S  + +L+  LCRK+    A  L   ML K
Sbjct: 243 S--YRILMQALCRKSQVNGAVDLLEDMLNK 270


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 178/406 (43%), Gaps = 69/406 (16%)

Query: 82  IWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGC---------------- 125
           IW  L   YR  +F             +P++   +++ Y E+G                 
Sbjct: 141 IWDELVGVYREFAF-------------SPTVFDMILKVYVEKGLTKNALYVFDNMGKCGR 187

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           + S++    + N   K    + A +V ++M    + PD  + + ++  FC+ G +  A  
Sbjct: 188 IPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAG 247

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV---------- 235
            +K M  + + P+I+TY S+I G+ + G +E A G+ K M   G + N+V          
Sbjct: 248 FVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYC 307

Query: 236 --------------------------AYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
                                     AY  L+DG CR G ++ A+ LL EM + G     
Sbjct: 308 KQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLG--LKT 365

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           N+    S+I  +C +G + EA G++ RM      P+  + +TL+ G+C EG+  EA+ L 
Sbjct: 366 NLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLC 425

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           DK++  G   +   Y++L+  L R     +A +++  M+  GV PD +  S ++  L   
Sbjct: 426 DKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKM 485

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
                   L++DI   GF  S  +   + ++ GLC+    VEA ++
Sbjct: 486 ENFEGASTLWKDILARGFTKSRIT--FNTMISGLCKMGKMVEAEEI 529



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 143/298 (47%), Gaps = 6/298 (2%)

Query: 139 CEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           C++ ++ +EA  VLR M E   L PD   Y  +I  +C  G +  A  L+  M  + L  
Sbjct: 307 CKQCKM-DEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKT 365

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           ++    S+I G+C  G + +A G+   M       +  +Y+ LLDG CR G    A  L 
Sbjct: 366 NLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLC 425

Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
            +M +EG    P V+TY ++++  C  G   +AL I   M   G AP+ V  STL+ G  
Sbjct: 426 DKMLQEG--IEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLF 483

Query: 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
              N + A  L   ++A G   S   +++++  L +  ++ EAE++F KM   G  PDG+
Sbjct: 484 KMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGI 543

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
               +I   C    V + F +   +E+     S+  ++++ L+ GL +    VE   L
Sbjct: 544 TYRTLIDGYCKASNVGQAFKVKGAMEREXISPSI--EMYNSLISGLFKSRRLVEXTDL 599



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 164/357 (45%), Gaps = 32/357 (8%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++ +  K+ GC       + + +   KA    +A  V   M    + P   +YN++I   
Sbjct: 528 EIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGL 587

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            +   ++   +L+  MG+  L P+I+TY ++I G+C  G L+ A   +  M  +G +AN+
Sbjct: 588 FKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANI 647

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEG----GDCS---------------------- 268
           +  S ++ G+ RLG ++ A  L+ +M   G     +C                       
Sbjct: 648 IICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCK 707

Query: 269 ----PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PN + Y   I   C  G + +A      +   G  P+  T  TLI G+   GN+DE
Sbjct: 708 TFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDE 767

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A++L D+++  G V +   Y++L+  L +++ +  A++LF K+   G+ P+ +  + +I 
Sbjct: 768 AFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLID 827

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
             C  G +   F L + + + G   SV +  +S L+ GLC+      + KL   M+K
Sbjct: 828 GYCKIGNMDAAFKLKDKMIEEGISPSVVT--YSALINGLCKHGDIERSMKLLNQMIK 882



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 2/203 (0%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L P+ I+YN  I   C+ G +  A      + L    PD  TY ++I G+  AG +++A 
Sbjct: 710 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 769

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M R G   N+V Y+AL++G+C+  +++RA  L  ++ ++G    PNVVTY ++I 
Sbjct: 770 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKG--LFPNVVTYNTLID 827

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +C  G M  A  + D+M   G +P+ VT S LI G C  G+++ + +L+++++  G  S
Sbjct: 828 GYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDS 887

Query: 340 SGGCYSSLVVELVRTKRLKEAEK 362
               Y +LV    +T    E  K
Sbjct: 888 KLIEYCTLVQGGFKTSNYNEMSK 910



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 142/313 (45%), Gaps = 36/313 (11%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           I +N +I   C+ G M+ A+E+   M  +   PD ITY ++I G+C A  +  A  +   
Sbjct: 508 ITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 567

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+R   + ++  Y++L+ G+ +   +    +LL EM   G   +PN+VTY ++I  +C +
Sbjct: 568 MEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRG--LTPNIVTYGALIDGWCKE 625

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC- 343
           GM+ +A      M   G + N +  ST++ G    G +DEA  L+ K+V  G      C 
Sbjct: 626 GMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF 685

Query: 344 -------------------------------YSSLVVELVRTKRLKEAEKLFSKMLASGV 372
                                          Y+  +  L +T ++ +A + FS +   G 
Sbjct: 686 LKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGF 745

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD      +I      G V E F L +++ + G + ++ +  ++ L+ GLC+  +   A
Sbjct: 746 VPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVT--YNALINGLCKSENVDRA 803

Query: 433 AKLARFMLKKRIW 445
            +L   + +K ++
Sbjct: 804 QRLFHKLHQKGLF 816



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 7/228 (3%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIY-NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           +EA  +++KM +    PD   +  + IR    +    + DE  K      L P+ I Y  
Sbjct: 664 DEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTF----LLPNNIVYNI 719

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
            I G C  G+++DA   F ++   G   +   Y  L+ G    G+++ A  L  EM + G
Sbjct: 720 AIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRG 779

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PN+VTY ++I   C    +  A  +  ++   G  PN VT +TLI G+C  GN+D 
Sbjct: 780 --LVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDA 837

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           A++L DK++  G   S   YS+L+  L +   ++ + KL ++M+ +GV
Sbjct: 838 AFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 150/364 (41%), Gaps = 37/364 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  ++  EA  +  KM +    PD I Y  +I  +C+  ++  A ++   M   
Sbjct: 513 MISGLCKMGKMV-EAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMERE 571

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P I  Y S+I G   + RL +   L   M   G   N+V Y AL+DG C+ G +++A
Sbjct: 572 XISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKA 631

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG------------ 301
                EM + G   S N++  ++++      G + EA  ++ +M   G            
Sbjct: 632 FSSYFEMTENG--LSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSD 689

Query: 302 --------------------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
                                 PN +  +  I G C  G +D+A +    +   G V   
Sbjct: 690 IRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDN 749

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y +L+        + EA +L  +ML  G+ P+ +  + +I  LC    V     L+  
Sbjct: 750 FTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHK 809

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
           + + G   +V +  ++ L+ G C+  +   A KL   M+++ I         ++  L K 
Sbjct: 810 LHQKGLFPNVVT--YNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKH 867

Query: 462 GDEE 465
           GD E
Sbjct: 868 GDIE 871



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 137/338 (40%), Gaps = 38/338 (11%)

Query: 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL 160
           C+ S + Q       V  A + E    S++M   + +   K+R   E   +L +M    L
Sbjct: 553 CKASNVGQ----AFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGL 608

Query: 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220
            P+ + Y  +I  +C++G +  A      M    L  +II   +M+ G    GR+++A  
Sbjct: 609 TPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANL 668

Query: 221 LFKVMKRHG----------------------------CAA----NLVAYSALLDGICRLG 248
           L + M  HG                            C      N + Y+  + G+C+ G
Sbjct: 669 LMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTG 728

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ A      +  +G    P+  TY ++I  +   G + EA  + D M   G  PN VT
Sbjct: 729 KVDDARRFFSMLSLKG--FVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVT 786

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + LI G C   N+D A +L  K+   G   +   Y++L+    +   +  A KL  KM+
Sbjct: 787 YNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMI 846

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406
             G+ P  +  S +I  LC  G +     L   + K G
Sbjct: 847 EEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAG 884



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 77/134 (57%), Gaps = 2/134 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA  +  +M    L P+ + YN +I   C+  ++  A  L   +    L+P+++TY ++
Sbjct: 766 DEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTL 825

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G+C  G ++ A  L   M   G + ++V YSAL++G+C+ G +ER+++LL +M K G 
Sbjct: 826 IDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885

Query: 266 DCSPNVVTYTSVIQ 279
           D    ++ Y +++Q
Sbjct: 886 DSK--LIEYCTLVQ 897



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 1/208 (0%)

Query: 36  YTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSF 95
           Y  +QK  ++++++  T     +    I +   C   +     RFF   +L+  +   +F
Sbjct: 692 YAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG-FVPDNF 750

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
            Y           N      + +     G V ++     + N   K+   + A  +  K+
Sbjct: 751 TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 810

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            +  L P+ + YN +I  +C+ G+M AA +L   M    + P ++TY ++I G C  G +
Sbjct: 811 HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDI 870

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDG 243
           E +  L   M + G  + L+ Y  L+ G
Sbjct: 871 ERSMKLLNQMIKAGVDSKLIEYCTLVQG 898


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 157/313 (50%), Gaps = 6/313 (1%)

Query: 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           +V    +I   C+  R  + A+ +L +M E  ++P T IY  +I LF +  D   A  L 
Sbjct: 197 TVTYSALISAFCKLGR-RDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLF 255

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M      PD+ TY  +I+G   AGR+++A   F  M+R GC  + V  + +++ + + 
Sbjct: 256 EEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKA 315

Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEALGCAPNR 306
           G ++ A++L  EME     C P+VVTY ++I+ +F  K    E     +RM+  G +P+ 
Sbjct: 316 GRLDDAMKLFQEMETL--RCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 373

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
            T S LI GFC    +++A  L++++   G       Y SL+  L + KR   A +LF +
Sbjct: 374 FTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQE 433

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           +  +         +VMI+ L   G++ +   +++++ K+G   + D   ++ L+ GL R 
Sbjct: 434 LKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLG--CAPDVYAYNALMSGLART 491

Query: 427 NHSVEAAKLARFM 439
               EA    R M
Sbjct: 492 GMLDEALSTMRRM 504



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 165/367 (44%), Gaps = 9/367 (2%)

Query: 45  NIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRH--SSFMYNRACE 102
           + EK L  +  ++D   V EV+        +M  +FF WAA + +Y H  S++M    C 
Sbjct: 43  DAEKALEVLMLRVDHWLVREVMKTDVGVNVKM--QFFRWAAKRRNYEHDTSTYMALIHC- 99

Query: 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP 162
           +  ++Q   +   + E  +   CVV+   +  +  +   A++  +A+ +  ++     +P
Sbjct: 100 LEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQP 159

Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIKGFCNAGRLEDACGL 221
               YN++I +   +G      +L   M      +PD +TY ++I  FC  GR + A  L
Sbjct: 160 IAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQL 219

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              MK  G       Y+ L+    +      AL L  EM  +   C P+V TYT +I+  
Sbjct: 220 LNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQY--CRPDVFTYTELIRGL 277

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
              G + EA      M+  GC P+ V ++ +I      G LD+A +L  ++     + S 
Sbjct: 278 GKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSV 337

Query: 342 GCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
             Y++++  L  +K R  E    F +M  SG+ P     S++I   C   ++ +   L E
Sbjct: 338 VTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLE 397

Query: 401 DIEKIGF 407
           ++++ GF
Sbjct: 398 EMDEKGF 404



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 138/309 (44%), Gaps = 5/309 (1%)

Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR-LFCEKGD 179
           + EGC      M  + N   KA   ++AM + ++M      P  + YN +I+ LF  K  
Sbjct: 294 QREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSR 353

Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
                   + M    + P   TY  +I GFC   R+E A  L + M   G      AY +
Sbjct: 354 ASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCS 413

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+D + +    + A EL  E+++  G  S  V  Y  +I+     G + +A+ + D M  
Sbjct: 414 LIDALGKAKRYDLACELFQELKENCGSSSARV--YAVMIKHLGKAGRLDDAINMFDEMNK 471

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
           LGCAP+    + L+ G    G LDEA   + ++   G +     Y+ ++  L +T     
Sbjct: 472 LGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHR 531

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A ++ S M  S V+PD ++ + ++  L   G   E   L +++  +GF    D   +S +
Sbjct: 532 AMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGF--EYDLITYSSI 589

Query: 420 LLGLCRKNH 428
           L  + + +H
Sbjct: 590 LEAIGKVDH 598



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 40/212 (18%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++ +  KE     S ++  V+     KA   ++A+ +  +M +    PD   YN      
Sbjct: 429 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYN------ 482

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
                                        +++ G    G L++A    + M+ HGC  ++
Sbjct: 483 -----------------------------ALMSGLARTGMLDEALSTMRRMQEHGCIPDI 513

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
            +Y+ +L+G+ + G   RA+E+L  M++      P+VV+Y +V+      GM +EA  ++
Sbjct: 514 NSYNIILNGLAKTGGPHRAMEMLSNMKQ--STVRPDVVSYNTVLGALSHAGMFEEASKLM 571

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             M  LG   + +T S++++     G +D  Y
Sbjct: 572 KEMNTLGFEYDLITYSSILEAI---GKVDHEY 600



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 66/134 (49%)

Query: 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           I++ +   + GC   V     + +   +  + +EA+  +R+M E    PD   YN ++  
Sbjct: 463 INMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNG 522

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
             + G    A E++  M    + PD+++Y +++    +AG  E+A  L K M   G   +
Sbjct: 523 LAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYD 582

Query: 234 LVAYSALLDGICRL 247
           L+ YS++L+ I ++
Sbjct: 583 LITYSSILEAIGKV 596


>gi|77552391|gb|ABA95188.1| salt-inducible protein, putative [Oryza sativa Japonica Group]
          Length = 938

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 160/342 (46%), Gaps = 8/342 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S++    C+M  +       +D  EA    G   +  ++  +     K  + +EA+    
Sbjct: 451 SYLIRSYCKMGNLIN----AVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEAIAYFL 506

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           K  +  L  D +IYN  +  +C+ G+M  A +L+  M    L PD I Y  +I G+C  G
Sbjct: 507 KFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKG 566

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            +++A  +F+ M +     ++V Y+ L  G C+ G +    +LL  M  +G +  PN +T
Sbjct: 567 EMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLE--PNSLT 624

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           Y   I  FC  G + EA  + + +E  G     V  S+++ G+ + G  D AY L  +V 
Sbjct: 625 YGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVA 684

Query: 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
             G++      S L+ +L R   ++ A  +   ML   V PD ++ S +I   C  G + 
Sbjct: 685 RQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMD 744

Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           +    + D+ + G   SVD  ++++L+ G C+     EA +L
Sbjct: 745 KAHLWFHDMVQRGL--SVDVIVYTILMNGYCKAGRLQEACQL 784



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 160/332 (48%), Gaps = 7/332 (2%)

Query: 116 VVEAYKEEGC---VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           V+ AY E  C      V    ++     +A+  +EA+ V  +M E  ++PD   Y++ + 
Sbjct: 326 VLAAYNEMKCFQLTPDVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLI 385

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
             C+ G    A  +++ +    +  + + Y  ++ G C   RL++A  L +   R G   
Sbjct: 386 GLCDCGKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNP 445

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           ++  YS L+   C++G++  A++    M   G + + ++V+Y  ++Q F   GM  EA+ 
Sbjct: 446 DVYGYSYLIRSYCKMGNLINAVDHYEAMVSHGIETNCHIVSY--LLQCFRKLGMTSEAIA 503

Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
              + +  G   ++V  +  +  +C  GN++EA +L++++  GG       Y+ L+    
Sbjct: 504 YFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYC 563

Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
               ++ A+++F +ML + ++PD +  +++    C  G V+E F L + +   G     +
Sbjct: 564 LKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGL--EPN 621

Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444
           S  + + ++G CR  +  EA  L   + +K I
Sbjct: 622 SLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGI 653



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 164/364 (45%), Gaps = 57/364 (15%)

Query: 133 KVIFNL-----CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
           KVI+N+     C+   + NEA+ +L +M    L PD I Y  +I  +C KG+M  A ++ 
Sbjct: 517 KVIYNIAMDTYCKNGNM-NEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVF 575

Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
           + M   ++ PDI+TY  +  GFC +G + +   L   M   G   N + Y   + G CR 
Sbjct: 576 EEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRG 635

Query: 248 GSMERALELLGEMEKEGGD----------C--------------------SPNVVTYTS- 276
           G++  A  L   +E++G D          C                      N+V + S 
Sbjct: 636 GNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSC 695

Query: 277 --VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
             +I   C  G ++ A  +   M      P+ ++ S LI  +C  G++D+A+     +V 
Sbjct: 696 SKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQ 755

Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM----IRELCLGG 390
            G       Y+ L+    +  RL+EA +LF +M   G+KPD +A +V+    ++E    G
Sbjct: 756 RGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQG 815

Query: 391 -----QVLEGFCLYEDIEKIGFLSSV-------DSDIHSVLLLGLCRKNHSVEAAKLARF 438
                +    F L  +  K+  LSS+       D   ++VL+ G C+  + VEA +L   
Sbjct: 816 WEGIAKERRSFLLRANHNKL--LSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDE 873

Query: 439 MLKK 442
           ML+K
Sbjct: 874 MLQK 877



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 15/240 (6%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           K+I +LC    +   A  V + M E D+ PD I Y+ +I ++C+ GDM  A      M  
Sbjct: 697 KLINDLCRVGNVQG-ASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQ 755

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR------ 246
             L  D+I Y  ++ G+C AGRL++AC LF  M   G   +++AY+ LLDG  +      
Sbjct: 756 RGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQG 815

Query: 247 ---LGSMERALELLGEMEK-----EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
              +    R+  L     K     +     P+V  YT +I   C    + EA  + D M 
Sbjct: 816 WEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEML 875

Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
             G  P+    + LI G+C +G + +A  L+ +++  G       +S L    +R+++++
Sbjct: 876 QKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVLNQSSLRSRKIQ 935



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 28/236 (11%)

Query: 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227
           + +I   C  G++  A  + K M   D+ PD+I+Y  +I  +C  G ++ A   F  M +
Sbjct: 696 SKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQ 755

Query: 228 HGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287
            G + +++ Y+ L++G C+ G ++ A +L  +M   G    P+V+ YT ++      G +
Sbjct: 756 RGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLG--IKPDVIAYTVLLD-----GHL 808

Query: 288 KEALG---------------------ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
           KE L                      +L  M+ +   P+    + LI G C    L EA 
Sbjct: 809 KETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEAR 868

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382
           +L D+++  G       Y++L+        + +AE L  +M+  G++PD L  SV+
Sbjct: 869 ELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVL 924



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 129/309 (41%), Gaps = 65/309 (21%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM-----KGMGLIDL 195
           K+ L  E   +L +M +  L P+++ Y   I  FC  G++  A+ L      KG+  I+ 
Sbjct: 599 KSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIE- 657

Query: 196 YPDIITYVSMIKGF-----------------------------------CNAGRLEDACG 220
               + Y SM+ G+                                   C  G ++ A  
Sbjct: 658 ----VMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASN 713

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           + K+M  H    ++++YS L+   C+ G M++A     +M + G   S +V+ YT ++  
Sbjct: 714 VCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRG--LSVDVIVYTILMNG 771

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
           +C  G ++EA  +  +M  LG  P+ +  + L+ G   E  L + ++ I K      + +
Sbjct: 772 YCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKE-TLQQGWEGIAKERRSFLLRA 830

Query: 341 GG-----------------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
                              CY+ L+    + + L EA +LF +ML  G+ PD  A + +I
Sbjct: 831 NHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALI 890

Query: 384 RELCLGGQV 392
              C  G++
Sbjct: 891 NGYCSQGEI 899


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 175/381 (45%), Gaps = 11/381 (2%)

Query: 33  ERFYTHLQ--KNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSY 90
           ERF   L+  K   + EK L  +  ++D   V E++        +M  +FF WAA + +Y
Sbjct: 62  ERFIRILKIFKWGPDAEKALEVLMLRVDHWLVREIMKTDIGVNVKM--QFFRWAAKRRNY 119

Query: 91  RH--SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA 148
            H  S++M    C +  ++Q   +   + E  +   CVV+   +  +  +   A++ ++A
Sbjct: 120 EHDTSTYMALIHC-LEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKA 178

Query: 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIK 207
           + +  ++     +P    YN++I +   +G      EL   M      +PD +TY ++I 
Sbjct: 179 IAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALIS 238

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
            FC  GR + A  L   MK +G       Y+ L+    +L  +  AL L  EM  +   C
Sbjct: 239 AFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQY--C 296

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
            P+V TYT +I+     G + EA      M+  GC P+ + ++ +I      G LD+A +
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMK 356

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           L  ++     + S   Y++++  L  +K R  E    F +M  SG+ P     S++I   
Sbjct: 357 LFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGF 416

Query: 387 CLGGQVLEGFCLYEDIEKIGF 407
           C   ++ +   L E++++ GF
Sbjct: 417 CKTNRMEKAMMLLEEMDEKGF 437



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 155/307 (50%), Gaps = 6/307 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I   C+  R  + A+ +L +M +  ++P T IY  ++ LF +  D+  A  L + M   
Sbjct: 236 LISAFCKLGR-RDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQ 294

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
              PD+ TY  +I+G   AGR+++A   F  M+R GC  + +  + +++ + + G ++ A
Sbjct: 295 YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDA 354

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           ++L  EM      C P+VVTY ++I+ +F  K    E     +RM+  G +P+  T S L
Sbjct: 355 MKLFQEMGT--LRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSIL 412

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I GFC    +++A  L++++   G       Y SL+  L + KR   A +LF ++  +  
Sbjct: 413 IDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCG 472

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
                  +VMI+ L   G++ +   +++++ K+G   + D   ++ L+ GL R     EA
Sbjct: 473 SSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLG--CAPDVYAYNALMSGLARTGMLDEA 530

Query: 433 AKLARFM 439
               R M
Sbjct: 531 LSTMRRM 537



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 38/253 (15%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           KA   +EA     +M     RPDTI+ NN+I    + G +  A +L + MG +   P ++
Sbjct: 312 KAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVV 371

Query: 201 TYVSMIKG-FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           TY ++IK  F +  R  +    F+ MK  G + +   YS L+DG C+   ME+A+ LL E
Sbjct: 372 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 431

Query: 260 MEKEGGDCSPNVVTYTSVI-------------QIF------CGK---------------- 284
           M+++G    P    Y S+I             ++F      CG                 
Sbjct: 432 MDEKGFPPCP--AAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKA 489

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344
           G + +A+ + D M  LGCAP+    + L+ G    G LDEA   + ++   G +     Y
Sbjct: 490 GRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSY 549

Query: 345 SSLVVELVRTKRL 357
           + ++  L + + L
Sbjct: 550 NIILNGLQKQEDL 562



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 41/203 (20%)

Query: 115 DVVEAYKEEG---CVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
           D ++ ++E G   C+ SV     I   L E    A+E      +M E  + P +  Y+ +
Sbjct: 353 DAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSIL 412

Query: 171 IRLFCEKGDMIAADELMKGM-------------GLID-------------LYPDII---- 200
           I  FC+   M  A  L++ M              LID             L+ ++     
Sbjct: 413 IDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCG 472

Query: 201 -----TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
                 Y  MIK    AGRL+DA  +F  M + GCA ++ AY+AL+ G+ R G ++ AL 
Sbjct: 473 SSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALS 532

Query: 256 LLGEMEKEGGDCSPNVVTYTSVI 278
            +  M++ G  C P++ +Y  ++
Sbjct: 533 TMRRMQEHG--CIPDINSYNIIL 553


>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
 gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 135/264 (51%), Gaps = 8/264 (3%)

Query: 135 IFNLCEKARLAN----EAMWVLRKMPEFDLR-PDTIIYNNVIRLFCEKGDMIAADELMKG 189
           IFN+  K    N     A  V+++M    +  P+ + Y+ +I   CE G +  A E  + 
Sbjct: 192 IFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEE 251

Query: 190 MGLID-LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
           M   D + PD +TY  +I GFC  G+++ A  + + MK +GC+ N+  YS L++G C+ G
Sbjct: 252 MVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEG 311

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ++ A E+  E++  G    P+ ++YT++I   C  G + EA  +L +M+   C  + VT
Sbjct: 312 RLQEAKEVFNEIKSLG--MKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVT 369

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            + ++ G C EG  DEA  ++ K+   G   + G Y  ++  L +   L++A +L   ML
Sbjct: 370 FNVMLGGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLML 429

Query: 369 ASGVKPDGLACSVMIRELCLGGQV 392
             G  P     + ++  LC  G V
Sbjct: 430 NRGFVPHHATSNTLLLLLCNNGMV 453



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 134/263 (50%), Gaps = 4/263 (1%)

Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA-ANLVAYSA 239
           +A   L+     ++L P+   +  ++K  C  G L+ A  + K MK    +  NLV YS 
Sbjct: 172 LARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYST 231

Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
           L+ G+C  G ++ A+E   EM  +  +  P+ +TY  +I  FC +G +  A  IL+ M++
Sbjct: 232 LIGGLCENGKLKEAIEFFEEMVSKD-NILPDALTYNILINGFCQRGKVDRARTILEFMKS 290

Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
            GC+PN    S L+ G+C EG L EA ++ +++ + G       Y++L+  L RT R+ E
Sbjct: 291 NGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDE 350

Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
           A +L  +M     + D +  +VM+  LC  G+  E   + + +   GF   ++   + ++
Sbjct: 351 ATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFY--LNKGSYRIV 408

Query: 420 LLGLCRKNHSVEAAKLARFMLKK 442
           L  L +K    +A +L   ML +
Sbjct: 409 LNFLTQKGELRKATELLGLMLNR 431



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 138/268 (51%), Gaps = 4/268 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +I  LCE  +L  EA+    +M   D + PD + YN +I  FC++G +  A  +++ M  
Sbjct: 232 LIGGLCENGKLK-EAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKS 290

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
               P++  Y  ++ G+C  GRL++A  +F  +K  G   + ++Y+ L++ +CR G ++ 
Sbjct: 291 NGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDE 350

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A ELL +M+ +  DC  + VT+  ++   C +G   EAL ++ ++   G   N+ +   +
Sbjct: 351 ATELLQQMKDK--DCRADTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIV 408

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           +     +G L +A +L+  ++  G V      ++L++ L     +K+A +    +L  G 
Sbjct: 409 LNFLTQKGELRKATELLGLMLNRGFVPHHATSNTLLLLLCNNGMVKDAVESLLGLLEMGF 468

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYE 400
           KP+  +   ++  +C   ++L  F L +
Sbjct: 469 KPEHESWFTLVDLICRERKMLPVFELLD 496



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 118/242 (48%), Gaps = 8/242 (3%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVL 152
           + + N  C+  ++ +  +I+    E  K  GC  +V    V+ N  C++ RL  EA  V 
Sbjct: 266 NILINGFCQRGKVDRARTIL----EFMKSNGCSPNVFNYSVLMNGYCKEGRL-QEAKEVF 320

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
            ++    ++PDTI Y  +I   C  G +  A EL++ M   D   D +T+  M+ G C  
Sbjct: 321 NEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCRE 380

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           GR ++A  + + +   G   N  +Y  +L+ + + G + +A ELLG M   G    P+  
Sbjct: 381 GRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLNRG--FVPHHA 438

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           T  +++ + C  GM+K+A+  L  +  +G  P   +  TL+   C E  +   ++L+D +
Sbjct: 439 TSNTLLLLLCNNGMVKDAVESLLGLLEMGFKPEHESWFTLVDLICRERKMLPVFELLDVL 498

Query: 333 VA 334
           V 
Sbjct: 499 VT 500


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 188/418 (44%), Gaps = 48/418 (11%)

Query: 62  VIEVLHRCFPSQSQMGIRFFIWAA-LQSSYRHSSFMYNRA----CEMSRIKQNPSIIIDV 116
            + +L  CF    QM   F +    L+  Y+ ++ + N      C    +K++      V
Sbjct: 47  TLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKV 106

Query: 117 VEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176
           V     +G  +      ++ N   K      A+ +LR + +   RPD ++Y+ +I   C+
Sbjct: 107 VA----QGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCK 162

Query: 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFK------------- 223
              +  A +L   M    ++PD+ITY ++I GFC AG+L +A GL               
Sbjct: 163 DKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYT 222

Query: 224 ----------------------VMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
                                 VM + G   ++V YS L+DG C +G +++A ++   M 
Sbjct: 223 YNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMV 282

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
           + G   +P+V +Y  +I   C    + EA+ +L  M      P+ VT S+LI G C  G 
Sbjct: 283 QTG--VNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGR 340

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +     L  ++   G  ++   Y+SL+  L + + L +A  LF KM   G++P+    + 
Sbjct: 341 ITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTA 400

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
           +I  LC GG++ +G  L++ +   G+   +D   ++V++ GLC++    EA  +   M
Sbjct: 401 LIDGLCKGGRLKKGQALFQHLLVKGY--CIDVWTYTVMISGLCKEGMFDEALAMKSKM 456



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 163/322 (50%), Gaps = 8/322 (2%)

Query: 153 RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212
           ++M    + PD +  + +I  FC  G M  +  ++  +  +   P+ I   +++KG C  
Sbjct: 34  KQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLK 93

Query: 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272
           G ++ +      +   G   + V+Y  LL+G+C++G    A++LL  +E       P+VV
Sbjct: 94  GEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRS--TRPDVV 151

Query: 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
            Y+++I   C   ++ EA  +   M A G  P+ +T +TLI GFC+ G L EA+ L++++
Sbjct: 152 MYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEM 211

Query: 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392
           +      +   Y++L+  L +  ++KE++ L + M   GVKPD +  S+++   CL G+V
Sbjct: 212 ILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEV 271

Query: 393 LEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
            +     + I  +   + V+ D++S  +++ GLC+     EA  L R ML K +      
Sbjct: 272 QKA----KQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVT 327

Query: 451 VDKIVEHLKKSGDEELITNLPK 472
              +++ L K G    I +L K
Sbjct: 328 YSSLIDGLCKLGRITTILDLTK 349



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 157/342 (45%), Gaps = 36/342 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K +L +EA  +  +M    + PD I Y  +I  FC  G ++ A  L+  M L 
Sbjct: 156 IIDGLC-KDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILK 214

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
           ++ P+I TY ++I   C  G+++++  L  VM + G   ++V YS L+DG C +G +++A
Sbjct: 215 NINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKA 274

Query: 254 LELLGEMEKEG-------------GDCS--------------------PNVVTYTSVIQI 280
            ++   M + G             G C                     P+ VTY+S+I  
Sbjct: 275 KQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDG 334

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G +   L +   M   G   N VT ++L+ G C   NLD+A  L  K+   G   +
Sbjct: 335 LCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPN 394

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400
              Y++L+  L +  RLK+ + LF  +L  G   D    +VMI  LC  G   E   +  
Sbjct: 395 KYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKS 454

Query: 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            +E  G + +  +    +++  L  K+ + +A KL   M+ K
Sbjct: 455 KMEDNGCIPNAVT--FEIIIRSLLEKDENDKAEKLLHEMIAK 494



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 2/230 (0%)

Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
             +A  +   M +  + PD   YN +I   C+   +  A  L++ M   ++ PD +TY S
Sbjct: 271 VQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSS 330

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
           +I G C  GR+     L K M   G  ANLV Y++LLDG+C+  ++++A+ L  +M++ G
Sbjct: 331 LIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERG 390

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PN  TYT++I   C  G +K+   +   +   G   +  T + +I G C EG  DE
Sbjct: 391 --IQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDE 448

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374
           A  +  K+   G + +   +  ++  L+      +AEKL  +M+A G+ P
Sbjct: 449 ALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 124/243 (51%), Gaps = 6/243 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + +  C +  +++   I + +V+     G    V    +I N   K +  +EAM +LR
Sbjct: 259 SILMDGYCLVGEVQKAKQIFLVMVQT----GVNPDVYSYNIIINGLCKGKRVDEAMNLLR 314

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M   ++ PDT+ Y+++I   C+ G +    +L K M       +++TY S++ G C   
Sbjct: 315 EMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQ 374

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
            L+ A  LF  MK  G   N   Y+AL+DG+C+ G +++   L   +  +G     +V T
Sbjct: 375 NLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKG--YCIDVWT 432

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333
           YT +I   C +GM  EAL +  +ME  GC PN VT   +I+    +   D+A +L+ +++
Sbjct: 433 YTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMI 492

Query: 334 AGG 336
           A G
Sbjct: 493 AKG 495



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 125/257 (48%), Gaps = 8/257 (3%)

Query: 190 MGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249
           M L+   P II +  ++              L K M+  G   +LV  S L++  C LG 
Sbjct: 1   MLLLRHIPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQ 60

Query: 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309
           M  +  +LG++ K G    PN +   ++++  C KG +K++L   D++ A G   ++V+ 
Sbjct: 61  MAFSFSVLGKILKLG--YQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSY 118

Query: 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369
             L+ G C  G    A +L+  +    +      YS+++  L + K + EA  L+S+M A
Sbjct: 119 GILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNA 178

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCRKN 427
            G+ PD +  + +I   CL GQ++E F L  ++     L +++ +I++   L+  LC++ 
Sbjct: 179 RGIFPDVITYTTLICGFCLAGQLMEAFGLLNEM----ILKNINPNIYTYNTLIDTLCKEG 234

Query: 428 HSVEAAKLARFMLKKRI 444
              E+  L   M KK +
Sbjct: 235 KVKESKNLLAVMTKKGV 251


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 150/332 (45%), Gaps = 32/332 (9%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197
           LC   R A+EA+ +LR M      PDT++Y  VI   C +G +  A  L+  M L+    
Sbjct: 182 LCRLGR-ADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSA 240

Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
           D+ T+  ++ G C  GRL +A  L   M   GC  N + Y  LL G+C    +E A  +L
Sbjct: 241 DVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTML 300

Query: 258 GEME--------------------KEGGD---------CSPNVVTYTSVIQIFCGKGMMK 288
           G +                     KE  +         C P+  TY+ +I   C  G + 
Sbjct: 301 GRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLG 360

Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348
            A+ +L  ME  G AP+ VT + L+  FC  G  D    +++ +   G   +   Y+ ++
Sbjct: 361 SAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMI 420

Query: 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
             + + +R+ +A +   +M + G KPD    + +I  LC   Q+ E   L+E++   G +
Sbjct: 421 CAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVV 480

Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440
           ++  +  ++ L+  L R     +A  LA  M+
Sbjct: 481 ANAIT--YNTLIHALLRNGSWQDAISLANDMV 510



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 164/363 (45%), Gaps = 37/363 (10%)

Query: 114 IDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
           + ++ +    GCV  +V    VI  LC +  + NEA  +L +M       D   +N+++ 
Sbjct: 192 LTMLRSMARHGCVPDTVLYQTVIHALCAQGGV-NEAATLLDEMFLMGCSADVNTFNDIVH 250

Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA-------------------- 212
             C  G +  A  L+  M +    P+ ITY  ++KG C A                    
Sbjct: 251 GLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVVL 310

Query: 213 -----------GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
                      G+L++A  L++ M   GC  +   YS L+ G+C+LG +  A++LL EME
Sbjct: 311 FNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREME 370

Query: 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321
            +G   +P++VTYT ++  FC  GM      +L+ M   G + N    + +I   C +  
Sbjct: 371 DKG--FAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRR 428

Query: 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381
           +D+A + + ++ + G       Y++++  L    +++EAE LF  +L  GV  + +  + 
Sbjct: 429 MDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNT 488

Query: 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
           +I  L   G   +   L  D+   G   S+D   ++ L+  LCR  +   +  L   M +
Sbjct: 489 LIHALLRNGSWQDAISLANDMVLHG--CSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAE 546

Query: 442 KRI 444
           K I
Sbjct: 547 KGI 549



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 2/246 (0%)

Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
           K R  ++AM  +++M     +PD   YN +I   C    M  A+ L + +    +  + I
Sbjct: 425 KDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAI 484

Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
           TY ++I      G  +DA  L   M  HGC+ ++V+Y+ L+  +CR G+++R++ LL EM
Sbjct: 485 TYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEM 544

Query: 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320
            ++G    PN V+Y  +I   C    +++AL +   M      P+ VT +TLI G C  G
Sbjct: 545 AEKG--IKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMG 602

Query: 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380
            +  A  L++K+      +    Y+ L+    + + L +A  L ++ + SG+ P+     
Sbjct: 603 WMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWG 662

Query: 381 VMIREL 386
           +M++  
Sbjct: 663 IMVQNF 668



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 141/304 (46%), Gaps = 12/304 (3%)

Query: 115 DVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           ++ E    +GC        + I  LC+  RL + AM +LR+M +    P  + Y  ++  
Sbjct: 329 ELYETMGSKGCPPDAHTYSILIHGLCKLGRLGS-AMKLLREMEDKGFAPSIVTYTILLHS 387

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC  G       +++ M    L  ++  Y  MI   C   R++DA    + MK  G   +
Sbjct: 388 FCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPD 447

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
           +  Y+ ++  +C    ME A  L   +  EG     N +TY ++I      G  ++A+ +
Sbjct: 448 ICTYNTIIYHLCNNNQMEEAEYLFENLLHEG--VVANAITYNTLIHALLRNGSWQDAISL 505

Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353
            + M   GC+ + V+ + LIK  C +GN+D +  L+ ++   G   +   Y+ L+ EL +
Sbjct: 506 ANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCK 565

Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           T+R+++A +L  +ML   + PD +  + +I  LC  G +     L E +         + 
Sbjct: 566 TRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLH--------NE 617

Query: 414 DIHS 417
           D+H+
Sbjct: 618 DVHA 621



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 130/264 (49%), Gaps = 4/264 (1%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           PD   Y+ +I   C+ G + +A +L++ M      P I+TY  ++  FC  G  ++   +
Sbjct: 341 PDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAM 400

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
            +VM   G + NL  Y+ ++  +C+   M+ A+  + EM+ +G    P++ TY ++I   
Sbjct: 401 LEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQG--YKPDICTYNTIIYHL 458

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C    M+EA  + + +   G   N +T +TLI      G+  +A  L + +V  G     
Sbjct: 459 CNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDI 518

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y+ L+  L R   +  +  L S+M   G+KP+ ++ +++I ELC   +V +   L + 
Sbjct: 519 VSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSK- 577

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCR 425
            E +    + D   ++ L+ GLC+
Sbjct: 578 -EMLNQELTPDIVTYNTLINGLCK 600



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 7/251 (2%)

Query: 141 KARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
           +A    + + + R+M   D + P T  ++   R  C  G    A  +++ M      PD 
Sbjct: 148 RADCHTDVLSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDT 207

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           + Y ++I   C  G + +A  L   M   GC+A++  ++ ++ G+C LG +  A  L+  
Sbjct: 208 VLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDR 267

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M   G  C PN +TY  +++  C    ++EA  +L R+  L    N V  +T+I    ++
Sbjct: 268 MMIRG--CVPNAITYGFLLKGLCLASQVEEARTMLGRVPEL----NVVLFNTVIGRCLLD 321

Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
           G L EA +L + + + G       YS L+  L +  RL  A KL  +M   G  P  +  
Sbjct: 322 GKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTY 381

Query: 380 SVMIRELCLGG 390
           ++++   C  G
Sbjct: 382 TILLHSFCRNG 392



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 102/253 (40%), Gaps = 34/253 (13%)

Query: 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280
           L ++  R   + +  +Y+ +L    R       L L   M        P   T++   + 
Sbjct: 123 LDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRD-RVPPTTFTFSIAARA 181

Query: 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340
            C  G   EAL +L  M   GC P+ V   T+I   C +G ++EA  L+D++   G  + 
Sbjct: 182 LCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSAD 241

Query: 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE------ 394
              ++ +V  L    RL+EA +L  +M+  G  P+ +    +++ LCL  QV E      
Sbjct: 242 VNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLG 301

Query: 395 --------------GFC-----------LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
                         G C           LYE +   G     D+  +S+L+ GLC+    
Sbjct: 302 RVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKG--CPPDAHTYSILIHGLCKLGRL 359

Query: 430 VEAAKLARFMLKK 442
             A KL R M  K
Sbjct: 360 GSAMKLLREMEDK 372



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC K R   +A+ + ++M   +L PD + YN +I   C+ G M AA  L++ +   
Sbjct: 559 LISELC-KTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNE 617

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           D++ DIITY  +I   C A  L DA  L       G   N   +  ++    R
Sbjct: 618 DVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWGIMVQNFVR 670


>gi|334182559|ref|NP_001184987.1| PPR repeat-containing protein [Arabidopsis thaliana]
 gi|332190929|gb|AEE29050.1| PPR repeat-containing protein [Arabidopsis thaliana]
          Length = 798

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 210/444 (47%), Gaps = 42/444 (9%)

Query: 55  AKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSF---MYNRACEMSRIKQNPS 111
           ++L    V E++       S + + FF       ++RHSSF   + +      R  +   
Sbjct: 45  SELRHVHVEEIMDELMSESSDLSVWFFKELRDIYAFRHSSFSTLLVSHVLAGQRRFKELQ 104

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFN----LCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           +I++  +  +EEG     +   ++++    L  + R+ ++++++L+KM + +L   T  Y
Sbjct: 105 VILE--QLLQEEGTFRKWESTGLVWDMLLFLSSRLRMVDDSLYILKKMKDQNLNVSTQSY 162

Query: 168 NNVIRLFCEKGDM----------------IAADELMKGMGL------------IDLYPDI 199
           N+V+  F E   M                   D L +   L             D+ P +
Sbjct: 163 NSVLYHFRETDKMWDVYKEIKDKNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSV 222

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           +++ S++ G+C  G ++ A   F  + + G   ++ +++ L++G+C +GS+  ALEL  +
Sbjct: 223 VSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASD 282

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M K G    P+ VTY  + + F   GM+  A  ++  M   G +P+ +T + L+ G C  
Sbjct: 283 MNKHG--VEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQL 340

Query: 320 GNLDEAYQLI-DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           GN+D    L+ D +  G  ++S    S ++  L +T R+ EA  LF++M A G+ PD +A
Sbjct: 341 GNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVA 400

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            S++I  LC  G+      LY+++     L   +S  H  LLLGLC+K   +EA  L   
Sbjct: 401 YSIVIHGLCKLGKFDMALWLYDEMCDKRILP--NSRTHGALLLGLCQKGMLLEARSLLDS 458

Query: 439 MLKKRIWLQGPYVDKIVEHLKKSG 462
           ++     L     + +++   KSG
Sbjct: 459 LISSGETLDIVLYNIVIDGYAKSG 482



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 142/292 (48%), Gaps = 5/292 (1%)

Query: 124 GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           G V SV    ++ N LC    +A EA+ +   M +  + PD++ YN + + F   G +  
Sbjct: 252 GLVPSVYSHNILINGLCLVGSIA-EALELASDMNKHGVEPDSVTYNILAKGFHLLGMISG 310

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN-LVAYSALL 241
           A E+++ M    L PD+ITY  ++ G C  G ++    L K M   G   N ++  S +L
Sbjct: 311 AWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVML 370

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G+C+ G ++ AL L  +M+ +G   SP++V Y+ VI   C  G    AL + D M    
Sbjct: 371 SGLCKTGRIDEALSLFNQMKADG--LSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKR 428

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN  T   L+ G C +G L EA  L+D +++ G       Y+ ++    ++  ++EA 
Sbjct: 429 ILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEAL 488

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           +LF  ++ +G+ P     + +I   C    + E   + + I+  G   SV S
Sbjct: 489 ELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVS 540



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 150/338 (44%), Gaps = 41/338 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+  LC + +L  +A+  LR     D+ P  + +N+++  +C+ G +  A      +   
Sbjct: 193 VVDGLCRQQKL-EDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKC 251

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P + ++  +I G C  G + +A  L   M +HG   + V Y+ L  G   LG +  A
Sbjct: 252 GLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGA 311

Query: 254 LELLGEMEKEGGDCSPNVVTYT------------------------------SVIQI--- 280
            E++ +M  +G   SP+V+TYT                              S+I     
Sbjct: 312 WEVIRDMLDKG--LSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVM 369

Query: 281 ---FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
               C  G + EAL + ++M+A G +P+ V  S +I G C  G  D A  L D++     
Sbjct: 370 LSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRI 429

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
           + +   + +L++ L +   L EA  L   +++SG   D +  +++I      G + E   
Sbjct: 430 LPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALE 489

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           L++ + + G   SV +   + L+ G C+  +  EA K+
Sbjct: 490 LFKVVIETGITPSVAT--FNSLIYGYCKTQNIAEARKI 525



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 118/276 (42%), Gaps = 14/276 (5%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G  + + +  ++ +   K+    EA+ + + + E  + P    +N++I  +C+  ++  A
Sbjct: 463 GETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEA 522

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            +++  + L  L P +++Y +++  + N G  +    L + MK  G     V YS +  G
Sbjct: 523 RKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKG 582

Query: 244 ICRLGSMERALELLGE------------MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
           +CR    E    +L E            ME EG    P+ +TY ++IQ  C    +  A 
Sbjct: 583 LCRGWKHENCNHVLRERIFEKCKQGLRDMESEG--IPPDQITYNTIIQYLCRVKHLSGAF 640

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
             L+ M++     +  T + LI   CV G + +A   I  +       S   Y++L+   
Sbjct: 641 VFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAH 700

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
                 + A KLF ++L  G        S +I  LC
Sbjct: 701 CVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLC 736


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 187/431 (43%), Gaps = 44/431 (10%)

Query: 46  IEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEM-- 103
           IEK+L      L    V +V+HR            F WA  QS + H+ F  N    +  
Sbjct: 56  IEKSLGLYGDILVPDLVGKVIHRI--PDPNTAWEVFQWAGKQSKFTHNRFTCNNLLSVYV 113

Query: 104 -SRIKQNPSIII--------------------------DVVEAY------KEEGCVVSVK 130
            +R  ++  +                            DV +A       K+ G  V   
Sbjct: 114 KARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVLRS 173

Query: 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190
              V+  LC   +++    W + K       P+ I Y  +I   C+   +  A  L K M
Sbjct: 174 HNIVLRGLCSGGKIS--MAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQM 231

Query: 191 GLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250
               +YPD++TY ++I G     R+++A  LF+  +  GC   +V Y+ ++DG+C+ G +
Sbjct: 232 VDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRI 291

Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
           E AL L  +M +E     P++ TY+++I         ++A  + + M   GC+P+ VT +
Sbjct: 292 ENALTLYDDMVRE-PHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYN 350

Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG-CYSSLVVELVRTKRLKEAEKLFSKMLA 369
           TL+ G C  G  D+A ++  K+  G         Y+ L+    +  RL +A KL  +M  
Sbjct: 351 TLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEG 410

Query: 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429
             + PD +  + +I++LC   ++ E    +E  E IG     DS + + +L G C+    
Sbjct: 411 RSLLPDAVTFTTVIQKLCKESRIDEA---HELFESIGKTCKPDSVLFNTMLAGYCKITRI 467

Query: 430 VEAAKLARFML 440
            +A KL   ML
Sbjct: 468 DDAKKLHDRML 478



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 166/351 (47%), Gaps = 48/351 (13%)

Query: 118 EAYKEEGCVVSVKMMK---VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           E +K+   + S  ++    +I  LC K+R  ++A+ + ++M +  + PD + Y  +I   
Sbjct: 192 EVFKDMSGIFSPNLISYTIMIDGLC-KSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGL 250

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------ 228
            ++  +  A +L +       +P ++TY +MI G C  GR+E+A  L+  M R       
Sbjct: 251 GKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPD 310

Query: 229 ------------------------------GCAANLVAYSALLDGICRLGSMERALELLG 258
                                         GC+ ++V Y+ LLDG+C+ G  ++A+E+  
Sbjct: 311 MFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFR 370

Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318
           +M   G  C PNV+TYT +I  FC    + +A+ +   ME     P+ VT +T+I+  C 
Sbjct: 371 KM-GVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCK 429

Query: 319 EGNLDEAYQLIDKVVAGGSVSSGGC-YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377
           E  +DEA++L + +  G +       +++++    +  R+ +A+KL  +ML SG  P   
Sbjct: 430 ESRIDEAHELFESI--GKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLA 487

Query: 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
             + ++   C  G+  +   +Y ++ ++GF      + H   L+   R +H
Sbjct: 488 TYTALVTGFCRTGRYSDALIMYHEMIEMGF----PPERHLAELVDRTRTDH 534



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 134/265 (50%), Gaps = 9/265 (3%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173
           D+ E  + +GC  +V     + + LC+  R+ N        + E  L+PD   Y+ +I  
Sbjct: 261 DLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALING 320

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK-RHGCAA 232
                    A EL + M      PD++TY +++ G C +G  + A  +F+ M   + C  
Sbjct: 321 LNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDP 380

Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292
           N++ Y+ L+D  C++  +  A++L  EME  G    P+ VT+T+VIQ  C +  + EA  
Sbjct: 381 NVITYTVLIDRFCKVDRLGDAVKLAKEME--GRSLLPDAVTFTTVIQKLCKESRIDEAHE 438

Query: 293 ILDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350
           +    E++G  C P+ V  +T++ G+C    +D+A +L D+++  G   +   Y++LV  
Sbjct: 439 LF---ESIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTG 495

Query: 351 LVRTKRLKEAEKLFSKMLASGVKPD 375
             RT R  +A  ++ +M+  G  P+
Sbjct: 496 FCRTGRYSDALIMYHEMIEMGFPPE 520



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 125/262 (47%), Gaps = 5/262 (1%)

Query: 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263
           +++  +  A R+EDA   F+   ++    + V+Y+ L++G  + G +++AL L GEM+  
Sbjct: 107 NLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDS 166

Query: 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323
           G      + ++  V++  C  G +  A  +   M  +  +PN ++ + +I G C    +D
Sbjct: 167 G---IAVLRSHNIVLRGLCSGGKISMAWEVFKDMSGI-FSPNLISYTIMIDGLCKSRKVD 222

Query: 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383
           +A  L  ++V          Y +L+  L + +R+KEA  LF +  A G  P  +  + MI
Sbjct: 223 KAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMI 282

Query: 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443
             LC  G++     LY+D+ +   L   D   +S L+ GL   N   +A +L   ML   
Sbjct: 283 DGLCKCGRIENALTLYDDMVREPHLKP-DMFTYSALINGLNLSNRGEKAYELYEEMLDTG 341

Query: 444 IWLQGPYVDKIVEHLKKSGDEE 465
                   + +++ L KSG E+
Sbjct: 342 CSPDVVTYNTLLDGLCKSGCED 363



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 4/193 (2%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDL-RPDTIIYNNVIRL 173
           ++ E   + GC   V     + +   K+   ++AM + RKM   ++  P+ I Y  +I  
Sbjct: 332 ELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDR 391

Query: 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
           FC+   +  A +L K M    L PD +T+ ++I+  C   R+++A  LF+ + +  C  +
Sbjct: 392 FCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGK-TCKPD 450

Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
            V ++ +L G C++  ++ A +L   M   G  C+P + TYT+++  FC  G   +AL +
Sbjct: 451 SVLFNTMLAGYCKITRIDDAKKLHDRMLDSG--CAPTLATYTALVTGFCRTGRYSDALIM 508

Query: 294 LDRMEALGCAPNR 306
              M  +G  P R
Sbjct: 509 YHEMIEMGFPPER 521


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 162/331 (48%), Gaps = 5/331 (1%)

Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
            +I  LC+  +L   A  +L++M +  LRPDT  YN +++   ++ D   A EL+  M  
Sbjct: 388 NLIRGLCKIGQLG-RASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRN 446

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
             + P++ +Y  MI G C  G  ++A  L + M   G   N   Y+ L+ G  + G++  
Sbjct: 447 SGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISL 506

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A E L +M K   +  P++  Y S+I+     G M+EA     +++  G  P+  T S L
Sbjct: 507 ACEALEKMTK--ANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGL 564

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           I G+C  GNL++A QL+ +++  G   +   Y+ L+    ++   ++   +   ML SG 
Sbjct: 565 IHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGD 624

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
           KPD     ++IR L     +   F +  ++EK G +   D  I+S L+ GLC+     +A
Sbjct: 625 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVP--DLHIYSSLISGLCKIADMEKA 682

Query: 433 AKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463
             L   M K+ +       + +++   +SGD
Sbjct: 683 VGLLDEMAKEGLEPGIVCYNALIDGFCRSGD 713



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/440 (23%), Positives = 190/440 (43%), Gaps = 71/440 (16%)

Query: 91  RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAM 149
           R  +F YN   +    + +     +++   +  G + +V    ++ N LC+    + EA 
Sbjct: 415 RPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGE-SKEAG 473

Query: 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209
            +L +M    L+P+  +Y  +I    ++G++  A E ++ M   +++PD+  Y S+IKG 
Sbjct: 474 NLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGL 533

Query: 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
              GR+E+A   +  +++ G   +   YS L+ G C+ G++E+A +LL +M   G    P
Sbjct: 534 STVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSG--LKP 591

Query: 270 NVVTYT----------------SVIQIFCGKG-------------------MMKEALGIL 294
           N  TYT                S++Q   G G                    M+ A  +L
Sbjct: 592 NADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVL 651

Query: 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354
             +E  G  P+    S+LI G C   ++++A  L+D++   G      CY++L+    R+
Sbjct: 652 TEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRS 711

Query: 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE-------------- 400
             +  A  +F  +LA G+ P+ +  + +I   C  G + + F LY+              
Sbjct: 712 GDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVY 771

Query: 401 -----------DIEKIGFLSS-------VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
                      D+E+  FL+         +  + + L+ G C++    E  KL   M+ +
Sbjct: 772 NVLATGCSDAADLEQALFLTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDR 831

Query: 443 RIWLQGPYVDKIVEHLKKSG 462
            I      V+K+V    K+G
Sbjct: 832 EIVPNAQTVEKVVSEFGKAG 851



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 161/355 (45%), Gaps = 4/355 (1%)

Query: 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
           V E  +   C ++     V+ +   ++    EA     +M ++ L PD   Y  ++   C
Sbjct: 265 VFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLC 324

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
           +   +  A  L+  M    L P+I+ Y +++ GF   G+  +A  + K M   G   N +
Sbjct: 325 KGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKI 384

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
            Y  L+ G+C++G + RA +LL EM K G    P+  TY  ++Q    +     A  +L+
Sbjct: 385 MYDNLIRGLCKIGQLGRASKLLKEMIKVG--LRPDTFTYNPLMQGHFQQHDKDGAFELLN 442

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M   G  PN  +   +I G C  G   EA  L++++++ G   +   Y+ L++   +  
Sbjct: 443 EMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEG 502

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
            +  A +   KM  + V PD    + +I+ L   G++ E    Y  ++K G +   D   
Sbjct: 503 NISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVP--DEFT 560

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
           +S L+ G C+  +  +A +L R ML   +         ++E   KS D E ++++
Sbjct: 561 YSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSI 615



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 3/220 (1%)

Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
           A  VL ++ +  L PD  IY+++I   C+  DM  A  L+  M    L P I+ Y ++I 
Sbjct: 647 AFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALID 706

Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
           GFC +G +  A  +F  +   G   N V Y+AL+DG C+ G +  A +L  EM   G   
Sbjct: 707 GFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRG--I 764

Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
           +P+   Y  +         +++AL + + M   G A N    +TL+ GFC  G L E  +
Sbjct: 765 APDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNTLVHGFCKRGKLQETEK 823

Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
           L+  ++    V +      +V E  +  +L EA ++F+++
Sbjct: 824 LLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAEL 863



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 138/323 (42%), Gaps = 29/323 (8%)

Query: 32  AERFYTHLQKN---PN---------------NIEKTLATVKAKLDS------TCVIEVLH 67
           AE +Y  +QK    P+               N+EK    ++  L+S          ++L 
Sbjct: 542 AEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLE 601

Query: 68  RCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV 127
             F S     +   + + L S  +  + +Y          +N  +   V+   ++ G V 
Sbjct: 602 GYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVP 661

Query: 128 SVKMMK-VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
            + +   +I  LC+ A +  +A+ +L +M +  L P  + YN +I  FC  GD+  A  +
Sbjct: 662 DLHIYSSLISGLCKIADM-EKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNV 720

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
              +    L P+ +TY ++I G C  G + DA  L+K M   G A +   Y+ L  G   
Sbjct: 721 FDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSD 780

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
              +E+AL L  EM   G     NV  + +++  FC +G ++E   +L  M      PN 
Sbjct: 781 AADLEQALFLTEEMFNRG---YANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNA 837

Query: 307 VTISTLIKGFCVEGNLDEAYQLI 329
            T+  ++  F   G L EA+++ 
Sbjct: 838 QTVEKVVSEFGKAGKLGEAHRVF 860



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 116/246 (47%), Gaps = 2/246 (0%)

Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221
           P T + + ++  + + G +  A +++  M  + L P       ++K    A  +E    L
Sbjct: 171 PSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKL 230

Query: 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281
              M+  G   ++  YS  ++  C+    + A ++  EM +   DC+ N VTY  +I   
Sbjct: 231 KGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRR--DCAMNEVTYNVMISGL 288

Query: 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
           C  G ++EA G  + M   G +P+  T   L+ G C    L EA  L+D++   G   + 
Sbjct: 289 CRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNI 348

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y +LV   ++  +  EA  +  +M+++GV+P+ +    +IR LC  GQ+     L ++
Sbjct: 349 VVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKE 408

Query: 402 IEKIGF 407
           + K+G 
Sbjct: 409 MIKVGL 414



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 106/269 (39%), Gaps = 20/269 (7%)

Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           P    +  +    C A     A GL   M        LV           L S++RA++ 
Sbjct: 113 PSADAFARLAASLCAASLFPQANGLLHQMILAHPHPPLV-----------LASIQRAIQ- 160

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
             + +      SP+      ++  +   G ++ A  ++  M  LG AP R   + L+K  
Sbjct: 161 --DTDHRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDL 218

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
                ++  ++L   +   G +     YS+ +    + +    A+K+F +M       + 
Sbjct: 219 LRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNE 278

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  +VMI  LC  G V E F   E++   G   S D+  +  L+ GLC+ +   EA  L 
Sbjct: 279 VTYNVMISGLCRSGAVEEAFGFKEEMVDYGL--SPDAFTYGALMNGLCKGSRLKEAKALL 336

Query: 437 RFM----LKKRIWLQGPYVDKIVEHLKKS 461
             M    LK  I + G  VD  ++  K +
Sbjct: 337 DEMSCSGLKPNIVVYGTLVDGFMKEGKTA 365



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 81/182 (44%), Gaps = 6/182 (3%)

Query: 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356
           ME  G  P+  T ST I+  C   + D A ++ +++       +   Y+ ++  L R+  
Sbjct: 234 MEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 293

Query: 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH 416
           ++EA     +M+  G+ PD      ++  LC G ++ E   L +++   G   ++   ++
Sbjct: 294 VEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNI--VVY 351

Query: 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD----EELITNLPK 472
             L+ G  ++  + EA  + + M+   +       D ++  L K G      +L+  + K
Sbjct: 352 GTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIK 411

Query: 473 IG 474
           +G
Sbjct: 412 VG 413


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 157/316 (49%), Gaps = 4/316 (1%)

Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
           EA+ V ++M    + PD +  + ++   C+ G +  A ++   M +    PD+ +Y  M+
Sbjct: 320 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 379

Query: 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266
            G+   G L D   LF +M   G A +   ++ L+      G +++A+ +  EM   G  
Sbjct: 380 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHG-- 437

Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
             P+VVTY +VI   C  G M +A+   ++M   G AP++   + LI+GFC  G+L +A 
Sbjct: 438 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 497

Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386
           +LI +++  G       +SS++  L +  R+ +A+ +F   +  G+ PD +  S+++   
Sbjct: 498 ELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGY 557

Query: 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446
           CL G++ +   +++ +   G   +V   ++  L+ G C+     E   L R ML++ I  
Sbjct: 558 CLVGKMEKALRVFDAMVSAGIEPNV--VVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKP 615

Query: 447 QGPYVDKIVEHLKKSG 462
                  I++ L ++G
Sbjct: 616 STILYSIIIDGLFQAG 631



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 148/290 (51%), Gaps = 4/290 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           N+A  + ++M +  + PD + YN+V+   C+   M  A+  ++ M    + P+  TY ++
Sbjct: 249 NKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNL 308

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G+ + G+ ++A  +FK M+RH    ++V  S L+  +C+ G ++ A ++   M  +G 
Sbjct: 309 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 368

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325
           +  P+V +Y  ++  +  KG + +   + D M   G AP+  T + LIK +   G LD+A
Sbjct: 369 N--PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKA 426

Query: 326 YQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385
             + +++   G       Y +++  L R  ++ +A + F++M+  GV PD  A + +I+ 
Sbjct: 427 MIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQG 486

Query: 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
            C  G +L+   L  +I   G    +D    S ++  LC+    ++A  +
Sbjct: 487 FCTHGSLLKAKELISEIMNNGM--HLDIVFFSSIINNLCKLGRVMDAQNI 534



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 134/290 (46%), Gaps = 6/290 (2%)

Query: 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM--GLIDL 195
            CE  R       +L + PE    PD   Y+ +++  C++G    AD+L++ M  G    
Sbjct: 169 FCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVC 228

Query: 196 YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255
            P+++ Y ++I GF   G +  AC LFK M + G   +LV Y++++  +C+  +M++A  
Sbjct: 229 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 288

Query: 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315
            L +M  +     PN  TY ++I  +   G  KEA+ +   M      P+ VT+S L+  
Sbjct: 289 FLRQMVNK--RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGS 346

Query: 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
            C  G + EA  + D +   G       Y+ ++        L +   LF  ML  G+ PD
Sbjct: 347 LCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 406

Query: 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
               +V+I+     G + +   ++ ++   G    V +  +  ++  LCR
Sbjct: 407 FYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT--YRTVIAALCR 454



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 143/307 (46%), Gaps = 5/307 (1%)

Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
           V    VI  LC   ++ ++AM    +M +  + PD   YN +I+ FC  G ++ A EL+ 
Sbjct: 443 VTYRTVIAALCRIGKM-DDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELIS 501

Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
            +    ++ DI+ + S+I   C  GR+ DA  +F +    G   + V YS L+DG C +G
Sbjct: 502 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVG 561

Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
            ME+AL +   M   G    PNVV Y +++  +C  G + E L +   M   G  P+ + 
Sbjct: 562 KMEKALRVFDAMVSAG--IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTIL 619

Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
            S +I G    G    A     ++   G       Y+ ++  L + +   EA  LF ++ 
Sbjct: 620 YSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELR 679

Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428
           A  VK + +  + MI  +    +V E   L+  I +   + +V +  +S+++  L ++  
Sbjct: 680 AMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVT--YSIMITNLIKEGL 737

Query: 429 SVEAAKL 435
             EA  +
Sbjct: 738 VEEAEDM 744



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 132/274 (48%), Gaps = 3/274 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I NLC+  R+  +A  +        L PD ++Y+ ++  +C  G M  A  +   M   
Sbjct: 518 IINNLCKLGRVM-DAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSA 576

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P+++ Y +++ G+C  GR+++   LF+ M + G   + + YS ++DG+ + G    A
Sbjct: 577 GIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPA 636

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
                EM + G   + ++ TY  V++         EA+ +   + A+    N +T++T+I
Sbjct: 637 KMKFHEMTESG--IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMI 694

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            G      ++EA  L   +     V +   YS ++  L++   ++EAE +FS M  +G +
Sbjct: 695 DGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 754

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407
           P+    + ++REL    +++        I++  F
Sbjct: 755 PNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNF 788



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 121/244 (49%), Gaps = 3/244 (1%)

Query: 198 DIITYVSMIKGFCNAGRLEDACG-LFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
           +II    +++GFC A R ++A   L       GC  ++ +YS LL  +C  G   +A +L
Sbjct: 158 NIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDL 217

Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
           L  M + G  CSPNVV Y +VI  F  +G + +A  +   M   G  P+ VT ++++   
Sbjct: 218 LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHAL 277

Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
           C    +D+A   + ++V    + +   Y++L+     T + KEA ++F +M    + PD 
Sbjct: 278 CKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDV 337

Query: 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436
           +  S+++  LC  G++ E   +++ +   G    V S  ++++L G   K   V+   L 
Sbjct: 338 VTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS--YNIMLNGYATKGCLVDMTDLF 395

Query: 437 RFML 440
             ML
Sbjct: 396 DLML 399



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 117/241 (48%), Gaps = 7/241 (2%)

Query: 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254
           L P   TY  ++     A R E A   F  + R G   N++  + LL+G C     + AL
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 179

Query: 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG---CAPNRVTIST 311
           ++L     E G C P+V +Y+ +++  C +G   +A  +L RM A G   C+PN V  +T
Sbjct: 180 DILLHRTPELG-CVPDVFSYSILLKSLCDQGKSGQADDLL-RMMAEGGAVCSPNVVAYNT 237

Query: 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371
           +I GF  EG++++A  L  ++V  G       Y+S+V  L + + + +AE    +M+   
Sbjct: 238 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 297

Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
           V P+    + +I      GQ  E   +++++ +   L  V +   S+L+  LC+     E
Sbjct: 298 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVT--LSMLMGSLCKYGKIKE 355

Query: 432 A 432
           A
Sbjct: 356 A 356



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 113/239 (47%), Gaps = 6/239 (2%)

Query: 94  SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
           S + +  C + ++++   +   +V A  E   VV   ++      C+  R+ +E + + R
Sbjct: 551 SMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVN---GYCKIGRI-DEGLSLFR 606

Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
           +M +  ++P TI+Y+ +I    + G  + A      M    +  DI TY  +++G     
Sbjct: 607 EMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNR 666

Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273
             ++A  LFK ++      N++  + ++DG+ +   +E A +L   + +      PNVVT
Sbjct: 667 CFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR--SRLVPNVVT 724

Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332
           Y+ +I     +G+++EA  +   M+  GC PN   ++ +++    +  +  A   + K+
Sbjct: 725 YSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKI 783



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 79/173 (45%), Gaps = 2/173 (1%)

Query: 122 EEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181
           E G  + +    ++     K R  +EA+++ +++   +++ + I  N +I    +   + 
Sbjct: 645 ESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVE 704

Query: 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241
            A +L   +    L P+++TY  MI      G +E+A  +F  M+  GC  N    + ++
Sbjct: 705 EAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVV 764

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
             + +   + RA   L ++++   + S   +T   ++ +F  KG  +E +  L
Sbjct: 765 RELLKKNEIVRAGAYLSKIDER--NFSLEHLTAMLLVDLFSSKGTCREQIRFL 815


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 152/307 (49%), Gaps = 5/307 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           VI   C   ++ ++A+ V   M +    PD   Y+ ++   C++GD++    ++  M   
Sbjct: 289 VIHGFCHDGQV-HKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARN 347

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P++++Y S++ G C AGR+E A  LFK +K  G   + + YS +L G C+   +E  
Sbjct: 348 GITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEIC 407

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313
            +L  +M     +  P+   Y+S+I  +C    +KEAL + + M + G  PN VT + L+
Sbjct: 408 YDLWNDMVHH--NFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILV 465

Query: 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373
            GF  EG + EA+  +DKV   G V S   Y  ++  L +  +  +   +F+ M+  G  
Sbjct: 466 HGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYV 525

Query: 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
           PD +  S++I        + E F LY  +   G   ++ +  ++ L+ GLC  +   E  
Sbjct: 526 PDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFT--YTSLINGLCHDDKLPEVM 583

Query: 434 KLARFML 440
            L + M+
Sbjct: 584 TLFKHMI 590



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 146/284 (51%), Gaps = 6/284 (2%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP-DIITYVSMIKGFCNAGRLEDA 218
           +RP+   Y   +   C    + +A   ++ M     YP +   + ++I GFC+ G++  A
Sbjct: 244 VRPNAATYATYLYGLCHAKQVKSAWNFLQ-MLCQRGYPCNNYCFNAVIHGFCHDGQVHKA 302

Query: 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278
             +F  MK+ G   ++ +YS L+DG+C+ G +     +L EM + G   +PN+V+Y+S++
Sbjct: 303 IEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNG--ITPNLVSYSSLL 360

Query: 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338
              C  G ++ A  +  R++  G   + +  S ++ G C   +L+  Y L + +V    V
Sbjct: 361 HGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFV 420

Query: 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCL 398
                YSSL+    R ++LKEA ++F  M++ G+ P+ + C++++      G + E F  
Sbjct: 421 PDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLF 480

Query: 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
            + + + G + S+ +  + V++ GLC+ N   +   +   M+K+
Sbjct: 481 LDKVRQFGVVPSLCT--YRVIIHGLCKVNKPNDMWGIFADMIKR 522



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 153/344 (44%), Gaps = 25/344 (7%)

Query: 48  KTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAAL------QSSYRHSSFMYNRAC 101
           K L     K D      VLH C      + I + +W  +        +Y +SS +Y   C
Sbjct: 377 KRLKDQGFKHDHIVYSIVLHGCC-QHLDLEICYDLWNDMVHHNFVPDAYNYSSLIY-AYC 434

Query: 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR 161
              ++K+     ++V E    +G   +V    ++ +      L  EA   L K+ +F + 
Sbjct: 435 RHRQLKE----ALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVV 490

Query: 162 PDTIIYNNVIRLFCE---KGDM--IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216
           P    Y  +I   C+     DM  I AD + +G       PD + Y  +I GF  A  L+
Sbjct: 491 PSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRG-----YVPDTVLYSIIIDGFVKALDLQ 545

Query: 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276
           +A  L+  M   G   N+  Y++L++G+C    +   + L   M  EG   +P+ + YTS
Sbjct: 546 EAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEG--LAPDRILYTS 603

Query: 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336
           +I  +C +  MK AL I   ME  G + +    + LI GF     +D A   +++++  G
Sbjct: 604 LIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKG 663

Query: 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LAC 379
              +   Y+ L+V   +    K+A  +++ ML +G+ PD  L+C
Sbjct: 664 LTPTVVTYTDLIVGYFKIGDEKKAMAMYNSMLQAGIAPDAKLSC 707


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 178/406 (43%), Gaps = 69/406 (16%)

Query: 82  IWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGC---------------- 125
           IW  L   YR  +F             +P++   +++ Y E+G                 
Sbjct: 141 IWDELVGVYREFAF-------------SPTVFDMILKVYVEKGLTKNALYVFDNMGKCGR 187

Query: 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185
           + S++    + N   K    + A +V ++M    + PD  + + ++  FC+ G +  A  
Sbjct: 188 IPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAG 247

Query: 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV---------- 235
            +K M  + + P+I+TY S+I G+ + G +E A G+ K M   G + N+V          
Sbjct: 248 FVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYC 307

Query: 236 --------------------------AYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269
                                     AY  L+DG CR G ++ A+ LL EM + G     
Sbjct: 308 KQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLG--LKT 365

Query: 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329
           N+    S+I  +C +G + EA G++ RM      P+  + +TL+ G+C EG+  EA+ L 
Sbjct: 366 NLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLC 425

Query: 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389
           DK++  G   +   Y++L+  L R     +A +++  M+  GV PD +  S ++  L   
Sbjct: 426 DKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKM 485

Query: 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
                   L++DI   GF  S  +   + ++ GLC+    VEA ++
Sbjct: 486 ENFEGASTLWKDILARGFTKSRIT--FNTMISGLCKMGKMVEAEEI 529



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 115/208 (55%), Gaps = 2/208 (0%)

Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC 219
           L P+ I+YN  I   C+ G +  A      + L    PD  TY ++I G+  AG +++A 
Sbjct: 710 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 769

Query: 220 GLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279
            L   M R G   N+V Y+AL++G+C+  +++RA  L  ++ ++G    PNVVTY ++I 
Sbjct: 770 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKG--LFPNVVTYNTLID 827

Query: 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339
            +C  G M  A  + D+M   G +P+ VT S LI G C  G+++ + +L+++++  G  S
Sbjct: 828 GYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDS 887

Query: 340 SGGCYSSLVVELVRTKRLKEAEKLFSKM 367
               Y +LV   +R+  +++  KL+  M
Sbjct: 888 KLIEYCTLVQGYIRSGEMQKIHKLYDMM 915



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 145/303 (47%), Gaps = 6/303 (1%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
           +I   C++ ++ +EA  VLR M E   L PD   Y  +I  +C  G +  A  L+  M  
Sbjct: 302 LIKGYCKQCKM-DEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLR 360

Query: 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252
           + L  ++    S+I G+C  G + +A G+   M       +  +Y+ LLDG CR G    
Sbjct: 361 LGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSE 420

Query: 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312
           A  L  +M +EG    P V+TY ++++  C  G   +AL I   M   G AP+ V  STL
Sbjct: 421 AFNLCDKMLQEG--IEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTL 478

Query: 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
           + G     N + A  L   ++A G   S   +++++  L +  ++ EAE++F KM   G 
Sbjct: 479 LDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGC 538

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PDG+    +I   C    V + F +   +E+     S+  ++++ L+ GL +    VE 
Sbjct: 539 SPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSI--EMYNSLISGLFKSRRLVEV 596

Query: 433 AKL 435
             L
Sbjct: 597 TDL 599



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 164/357 (45%), Gaps = 32/357 (8%)

Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
           ++ +  K+ GC       + + +   KA    +A  V   M    + P   +YN++I   
Sbjct: 528 EIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGL 587

Query: 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
            +   ++   +L+  MG+  L P+I+TY ++I G+C  G L+ A   +  M  +G +AN+
Sbjct: 588 FKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANI 647

Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEG----GDCS---------------------- 268
           +  S ++ G+ RLG ++ A  L+ +M   G     +C                       
Sbjct: 648 IICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCK 707

Query: 269 ----PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PN + Y   I   C  G + +A      +   G  P+  T  TLI G+   GN+DE
Sbjct: 708 TFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDE 767

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A++L D+++  G V +   Y++L+  L +++ +  A++LF K+   G+ P+ +  + +I 
Sbjct: 768 AFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLID 827

Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441
             C  G +   F L + + + G   SV +  +S L+ GLC+      + KL   M+K
Sbjct: 828 GYCKIGNMDAAFKLKDKMIEEGISPSVVT--YSALINGLCKHGDIERSMKLLNQMIK 882



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 142/313 (45%), Gaps = 36/313 (11%)

Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
           I +N +I   C+ G M+ A+E+   M  +   PD ITY ++I G+C A  +  A  +   
Sbjct: 508 ITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGA 567

Query: 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284
           M+R   + ++  Y++L+ G+ +   +    +LL EM   G   +PN+VTY ++I  +C +
Sbjct: 568 MEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRG--LTPNIVTYGALIDGWCKE 625

Query: 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC- 343
           GM+ +A      M   G + N +  ST++ G    G +DEA  L+ K+V  G      C 
Sbjct: 626 GMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF 685

Query: 344 -------------------------------YSSLVVELVRTKRLKEAEKLFSKMLASGV 372
                                          Y+  +  L +T ++ +A + FS +   G 
Sbjct: 686 LKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGF 745

Query: 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432
            PD      +I      G V E F L +++ + G + ++ +  ++ L+ GLC+  +   A
Sbjct: 746 VPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVT--YNALINGLCKSENVDRA 803

Query: 433 AKLARFMLKKRIW 445
            +L   + +K ++
Sbjct: 804 QRLFHKLHQKGLF 816



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 124/256 (48%), Gaps = 7/256 (2%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIY-NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
           +EA  +++KM +    PD   +  + IR    +    + DE  K      L P+ I Y  
Sbjct: 664 DEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTF----LLPNNIVYNI 719

Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264
            I G C  G+++DA   F ++   G   +   Y  L+ G    G+++ A  L  EM + G
Sbjct: 720 AIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRG 779

Query: 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
               PN+VTY ++I   C    +  A  +  ++   G  PN VT +TLI G+C  GN+D 
Sbjct: 780 --LVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDA 837

Query: 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
           A++L DK++  G   S   YS+L+  L +   ++ + KL ++M+ +GV    +    +++
Sbjct: 838 AFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQ 897

Query: 385 ELCLGGQVLEGFCLYE 400
                G++ +   LY+
Sbjct: 898 GYIRSGEMQKIHKLYD 913



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 150/364 (41%), Gaps = 37/364 (10%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC+  ++  EA  +  KM +    PD I Y  +I  +C+  ++  A ++   M   
Sbjct: 513 MISGLCKMGKMV-EAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMERE 571

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            + P I  Y S+I G   + RL +   L   M   G   N+V Y AL+DG C+ G +++A
Sbjct: 572 PISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKA 631

Query: 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG------------ 301
                EM + G   S N++  ++++      G + EA  ++ +M   G            
Sbjct: 632 FSSYFEMTENG--LSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSD 689

Query: 302 --------------------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG 341
                                 PN +  +  I G C  G +D+A +    +   G V   
Sbjct: 690 IRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDN 749

Query: 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401
             Y +L+        + EA +L  +ML  G+ P+ +  + +I  LC    V     L+  
Sbjct: 750 FTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHK 809

Query: 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461
           + + G   +V +  ++ L+ G C+  +   A KL   M+++ I         ++  L K 
Sbjct: 810 LHQKGLFPNVVT--YNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKH 867

Query: 462 GDEE 465
           GD E
Sbjct: 868 GDIE 871



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 85/153 (55%), Gaps = 2/153 (1%)

Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
           +EA  +  +M    L P+ + YN +I   C+  ++  A  L   +    L+P+++TY ++
Sbjct: 766 DEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTL 825

Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
           I G+C  G ++ A  L   M   G + ++V YSAL++G+C+ G +ER+++LL +M K G 
Sbjct: 826 IDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885

Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
           D    ++ Y +++Q +   G M++   + D M 
Sbjct: 886 DSK--LIEYCTLVQGYIRSGEMQKIHKLYDMMH 916



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 1/226 (0%)

Query: 36  YTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSF 95
           Y  +QK  ++++++  T     +    I +   C   +     RFF   +L+  +   +F
Sbjct: 692 YAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG-FVPDNF 750

Query: 96  MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
            Y           N      + +     G V ++     + N   K+   + A  +  K+
Sbjct: 751 TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 810

Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
            +  L P+ + YN +I  +C+ G+M AA +L   M    + P ++TY ++I G C  G +
Sbjct: 811 HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDI 870

Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261
           E +  L   M + G  + L+ Y  L+ G  R G M++  +L   M 
Sbjct: 871 ERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMH 916


>gi|240254074|ref|NP_172820.4| PPR repeat-containing protein [Arabidopsis thaliana]
 gi|332190928|gb|AEE29049.1| PPR repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 210/444 (47%), Gaps = 42/444 (9%)

Query: 55  AKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSF---MYNRACEMSRIKQNPS 111
           ++L    V E++       S + + FF       ++RHSSF   + +      R  +   
Sbjct: 45  SELRHVHVEEIMDELMSESSDLSVWFFKELRDIYAFRHSSFSTLLVSHVLAGQRRFKELQ 104

Query: 112 IIIDVVEAYKEEGCVVSVKMMKVIFN----LCEKARLANEAMWVLRKMPEFDLRPDTIIY 167
           +I++  +  +EEG     +   ++++    L  + R+ ++++++L+KM + +L   T  Y
Sbjct: 105 VILE--QLLQEEGTFRKWESTGLVWDMLLFLSSRLRMVDDSLYILKKMKDQNLNVSTQSY 162

Query: 168 NNVIRLFCEKGDM----------------IAADELMKGMGL------------IDLYPDI 199
           N+V+  F E   M                   D L +   L             D+ P +
Sbjct: 163 NSVLYHFRETDKMWDVYKEIKDKNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSV 222

Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259
           +++ S++ G+C  G ++ A   F  + + G   ++ +++ L++G+C +GS+  ALEL  +
Sbjct: 223 VSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASD 282

Query: 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
           M K G    P+ VTY  + + F   GM+  A  ++  M   G +P+ +T + L+ G C  
Sbjct: 283 MNKHG--VEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQL 340

Query: 320 GNLDEAYQLI-DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
           GN+D    L+ D +  G  ++S    S ++  L +T R+ EA  LF++M A G+ PD +A
Sbjct: 341 GNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVA 400

Query: 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438
            S++I  LC  G+      LY+++     L   +S  H  LLLGLC+K   +EA  L   
Sbjct: 401 YSIVIHGLCKLGKFDMALWLYDEMCDKRILP--NSRTHGALLLGLCQKGMLLEARSLLDS 458

Query: 439 MLKKRIWLQGPYVDKIVEHLKKSG 462
           ++     L     + +++   KSG
Sbjct: 459 LISSGETLDIVLYNIVIDGYAKSG 482



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 142/292 (48%), Gaps = 5/292 (1%)

Query: 124 GCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182
           G V SV    ++ N LC    +A EA+ +   M +  + PD++ YN + + F   G +  
Sbjct: 252 GLVPSVYSHNILINGLCLVGSIA-EALELASDMNKHGVEPDSVTYNILAKGFHLLGMISG 310

Query: 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN-LVAYSALL 241
           A E+++ M    L PD+ITY  ++ G C  G ++    L K M   G   N ++  S +L
Sbjct: 311 AWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVML 370

Query: 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301
            G+C+ G ++ AL L  +M+ +G   SP++V Y+ VI   C  G    AL + D M    
Sbjct: 371 SGLCKTGRIDEALSLFNQMKADG--LSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKR 428

Query: 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361
             PN  T   L+ G C +G L EA  L+D +++ G       Y+ ++    ++  ++EA 
Sbjct: 429 ILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEAL 488

Query: 362 KLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413
           +LF  ++ +G+ P     + +I   C    + E   + + I+  G   SV S
Sbjct: 489 ELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVS 540



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 150/338 (44%), Gaps = 41/338 (12%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           V+  LC + +L  +A+  LR     D+ P  + +N+++  +C+ G +  A      +   
Sbjct: 193 VVDGLCRQQKL-EDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKC 251

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
            L P + ++  +I G C  G + +A  L   M +HG   + V Y+ L  G   LG +  A
Sbjct: 252 GLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGA 311

Query: 254 LELLGEMEKEGGDCSPNVVTYT------------------------------SVIQI--- 280
            E++ +M  +G   SP+V+TYT                              S+I     
Sbjct: 312 WEVIRDMLDKG--LSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVM 369

Query: 281 ---FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337
               C  G + EAL + ++M+A G +P+ V  S +I G C  G  D A  L D++     
Sbjct: 370 LSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRI 429

Query: 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397
           + +   + +L++ L +   L EA  L   +++SG   D +  +++I      G + E   
Sbjct: 430 LPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALE 489

Query: 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
           L++ + + G   SV +   + L+ G C+  +  EA K+
Sbjct: 490 LFKVVIETGITPSVAT--FNSLIYGYCKTQNIAEARKI 525



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 118/276 (42%), Gaps = 14/276 (5%)

Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
           G  + + +  ++ +   K+    EA+ + + + E  + P    +N++I  +C+  ++  A
Sbjct: 463 GETLDIVLYNIVIDGYAKSGCIEEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEA 522

Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
            +++  + L  L P +++Y +++  + N G  +    L + MK  G     V YS +  G
Sbjct: 523 RKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKG 582

Query: 244 ICRLGSMERALELLGE------------MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291
           +CR    E    +L E            ME EG    P+ +TY ++IQ  C    +  A 
Sbjct: 583 LCRGWKHENCNHVLRERIFEKCKQGLRDMESEG--IPPDQITYNTIIQYLCRVKHLSGAF 640

Query: 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351
             L+ M++     +  T + LI   CV G + +A   I  +       S   Y++L+   
Sbjct: 641 VFLEIMKSRNLDASSATYNILIDSLCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAH 700

Query: 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
                 + A KLF ++L  G        S +I  LC
Sbjct: 701 CVKGDPEMAVKLFHQLLHRGFNVSIRDYSAVINRLC 736


>gi|218202511|gb|EEC84938.1| hypothetical protein OsI_32153 [Oryza sativa Indica Group]
          Length = 994

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 150/319 (47%), Gaps = 35/319 (10%)

Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
           + ++   ++  +   A L   ++ +LR M  F L PD   + + +R     GD+ A   +
Sbjct: 507 LPLRHYALLLTISAHAGLFPASLALLRHMRSFGLAPDAACFRSALRSAASPGDVCAVLGI 566

Query: 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
           M   G+    P +   V+ +     AG    A  L + M   GC  N             
Sbjct: 567 MSACGV---SPSVPLVVASVHKLATAGDFVGARQLIEKMPEFGCVTN------------- 610

Query: 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306
                        ++  G  CS          ++ C +  M EAL +LDRM   G  PNR
Sbjct: 611 -------------VQFRGCGCSVGAGGRDGGWELGCRR--MGEALSLLDRMTGRGVMPNR 655

Query: 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366
           V + TL+ GFC E  + +AY ++++VV+ GSVSS  CY+ L+V L R     EAE L  +
Sbjct: 656 VFVRTLVSGFCSEEMVADAYAVVERVVSDGSVSSEQCYNVLLVCLWRVGMDGEAEGLGQR 715

Query: 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426
           M+  GV+   LA SVM+RELC   ++L+       +E+ G L   D+D+++ LLL LC +
Sbjct: 716 MMKKGVRLSPLAASVMVRELCNRNRLLDACYWIGVMEENGVL--CDTDVYNGLLLRLCVE 773

Query: 427 NHSVEAAKLARFMLKKRIW 445
            H  EA  LA+   + R+W
Sbjct: 774 GHVGEALALAK--KECRVW 790


>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 538

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 184/415 (44%), Gaps = 26/415 (6%)

Query: 76  MGIRFFIWAALQSSYRHS----SFMYNRACEMSRIKQNPSIIIDVV-------------- 117
           +   FF WA  ++   HS    + + +   +  + K   SI+ DV+              
Sbjct: 97  LSFEFFNWAKTRNPASHSLETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDA 156

Query: 118 --EAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175
              +Y+E  C  + ++   +F      +    A     +M ++   P     N  +    
Sbjct: 157 LLYSYRE--CDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLL 214

Query: 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235
            +G +  A    + M    + P+  T   ++ G+C +G+L+    L + M+R G  A  V
Sbjct: 215 GQGRVDIALRFYREMRRCKISPNTYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATHV 274

Query: 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295
           +Y+ L+ G C  G +  AL+L   M K G    PNVVT+ ++I  FC    ++EA  +  
Sbjct: 275 SYNTLIAGHCEKGLLSSALKLKNMMGKNG--LQPNVVTFNTLIHGFCRAVKLQEASKVFG 332

Query: 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
            M+AL   PN VT +TLI G+  +G+ + A++  + +V  G       Y++L++ L +  
Sbjct: 333 EMKALNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQA 392

Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
           + ++A +   ++    + P+    S +I   C+      GF LY+ + + G     +   
Sbjct: 393 KTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSG--CHPNEQT 450

Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
            ++L+   C+      AA++ R M+++ I L    V ++   L   G ++L+  L
Sbjct: 451 FNILISAFCKNEDFDGAAQVLREMVRRSIPLDSRTVHQVCNGLNHQGKDQLVKEL 505



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 1/128 (0%)

Query: 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI 193
           +I  LC++A+    A +V +++ + +L P++  ++ +I   C + +     EL K M   
Sbjct: 384 LILGLCKQAKTRKAAQFV-KELDKENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRS 442

Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
             +P+  T+  +I  FC     + A  + + M R     +      + +G+   G  +  
Sbjct: 443 GCHPNEQTFNILISAFCKNEDFDGAAQVLREMVRRSIPLDSRTVHQVCNGLNHQGKDQLV 502

Query: 254 LELLGEME 261
            ELL EME
Sbjct: 503 KELLQEME 510


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.138    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,989,956,946
Number of Sequences: 23463169
Number of extensions: 272971961
Number of successful extensions: 762215
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6187
Number of HSP's successfully gapped in prelim test: 5384
Number of HSP's that attempted gapping in prelim test: 611870
Number of HSP's gapped (non-prelim): 59131
length of query: 475
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 329
effective length of database: 8,933,572,693
effective search space: 2939145415997
effective search space used: 2939145415997
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)