Query 011902
Match_columns 475
No_of_seqs 616 out of 3068
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 17:38:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.1E-33 1.8E-37 278.4 44.2 401 59-472 84-574 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.6E-32 8.9E-37 273.3 41.1 368 92-472 82-540 (597)
3 4g26_A Pentatricopeptide repea 100.0 1E-31 3.5E-36 258.9 30.2 206 146-353 7-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 6.3E-32 2.1E-36 260.4 23.9 205 217-425 8-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 4.1E-26 1.4E-30 215.7 46.5 377 71-463 12-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.5E-26 8.7E-31 217.2 41.5 358 101-472 6-363 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.1E-22 7.3E-27 194.0 39.3 366 92-469 24-446 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.5E-22 5E-27 195.2 37.0 318 126-457 23-372 (450)
9 2gw1_A Mitochondrial precursor 99.9 2.4E-22 8.2E-27 197.0 35.4 359 70-443 18-479 (514)
10 2gw1_A Mitochondrial precursor 99.9 2.1E-21 7.2E-26 190.3 35.8 366 95-472 7-473 (514)
11 3fp2_A TPR repeat-containing p 99.9 4.2E-20 1.5E-24 182.1 38.0 83 70-155 37-119 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.4E-19 4.8E-24 168.5 37.3 318 131-461 5-353 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 2.1E-18 7.2E-23 160.5 38.4 318 94-424 3-351 (359)
14 3fp2_A TPR repeat-containing p 99.9 1.8E-18 6.2E-23 170.4 39.5 254 179-443 217-492 (537)
15 3hym_B Cell division cycle pro 99.9 4.7E-19 1.6E-23 163.0 32.7 295 161-466 19-323 (330)
16 1fch_A Peroxisomal targeting s 99.9 7.9E-19 2.7E-23 164.2 29.2 265 200-473 65-355 (368)
17 3hym_B Cell division cycle pro 99.8 1.9E-18 6.4E-23 158.9 30.6 294 126-430 19-322 (330)
18 2xm6_A Protein corresponding t 99.8 1.3E-15 4.5E-20 148.1 47.9 338 71-443 56-433 (490)
19 1fch_A Peroxisomal targeting s 99.8 3.6E-18 1.2E-22 159.7 27.7 293 141-440 37-357 (368)
20 4eqf_A PEX5-related protein; a 99.8 2.6E-18 8.7E-23 160.7 24.4 265 198-472 64-351 (365)
21 4eqf_A PEX5-related protein; a 99.8 5.7E-18 2E-22 158.3 24.2 269 162-438 63-352 (365)
22 2xm6_A Protein corresponding t 99.8 6E-15 2E-19 143.5 45.4 346 93-472 38-427 (490)
23 2ooe_A Cleavage stimulation fa 99.8 3E-15 1E-19 147.2 43.3 403 58-472 12-487 (530)
24 3cv0_A Peroxisome targeting si 99.8 1.2E-16 4.2E-21 146.6 28.0 277 165-473 22-311 (327)
25 3cv0_A Peroxisome targeting si 99.8 8.5E-17 2.9E-21 147.6 25.3 283 128-440 20-313 (327)
26 1b89_A Protein (clathrin heavy 99.8 9.1E-18 3.1E-22 154.7 18.0 283 107-434 16-303 (449)
27 3mkr_A Coatomer subunit epsilo 99.8 5.2E-16 1.8E-20 139.6 28.5 252 138-405 8-264 (291)
28 3mkr_A Coatomer subunit epsilo 99.8 8.6E-16 2.9E-20 138.2 28.9 251 174-443 9-265 (291)
29 3spa_A Mtrpol, DNA-directed RN 99.8 9.4E-19 3.2E-23 173.7 10.2 154 232-390 125-286 (1134)
30 3spa_A Mtrpol, DNA-directed RN 99.8 1.4E-18 4.7E-23 172.6 10.7 152 162-320 125-286 (1134)
31 2ooe_A Cleavage stimulation fa 99.7 2.3E-14 7.7E-19 140.9 38.9 371 92-473 11-450 (530)
32 1b89_A Protein (clathrin heavy 99.7 2.4E-17 8.1E-22 151.9 15.6 282 141-470 15-304 (449)
33 1xi4_A Clathrin heavy chain; a 99.7 1.1E-13 3.8E-18 142.1 40.4 273 135-461 1055-1327(1630)
34 4g1t_A Interferon-induced prot 99.7 8.5E-14 2.9E-18 134.7 36.7 361 91-472 48-454 (472)
35 1xi4_A Clathrin heavy chain; a 99.7 1.8E-12 6E-17 133.5 43.8 309 107-462 1089-1415(1630)
36 3uq3_A Heat shock protein STI1 99.7 1.7E-14 5.8E-19 127.3 24.5 228 200-443 6-237 (258)
37 3uq3_A Heat shock protein STI1 99.7 5.4E-14 1.8E-18 124.1 24.5 221 131-367 7-233 (258)
38 2pl2_A Hypothetical conserved 99.6 3.9E-14 1.3E-18 121.6 22.2 196 234-439 5-211 (217)
39 2pl2_A Hypothetical conserved 99.6 3.8E-14 1.3E-18 121.7 21.6 196 163-366 4-210 (217)
40 4g1t_A Interferon-induced prot 99.6 7.7E-13 2.6E-17 128.0 32.6 352 71-443 64-460 (472)
41 1ouv_A Conserved hypothetical 99.6 1.5E-12 5.3E-17 116.0 31.8 223 199-443 6-252 (273)
42 3u4t_A TPR repeat-containing p 99.6 3.2E-13 1.1E-17 120.2 26.4 251 202-458 6-265 (272)
43 2ho1_A Type 4 fimbrial biogene 99.6 7.7E-13 2.6E-17 116.3 27.5 202 234-443 37-239 (252)
44 2vq2_A PILW, putative fimbrial 99.6 5.7E-13 1.9E-17 114.8 25.1 164 166-333 10-174 (225)
45 2ho1_A Type 4 fimbrial biogene 99.6 1.1E-12 3.7E-17 115.4 27.1 202 164-370 37-238 (252)
46 3u4t_A TPR repeat-containing p 99.6 4E-13 1.4E-17 119.6 24.6 161 132-299 6-170 (272)
47 1ouv_A Conserved hypothetical 99.6 3.6E-12 1.2E-16 113.6 30.6 219 233-473 5-247 (273)
48 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-13 5.2E-18 122.5 21.4 244 177-436 18-269 (275)
49 2vq2_A PILW, putative fimbrial 99.6 2.2E-12 7.5E-17 111.0 28.0 203 234-443 8-212 (225)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.5E-14 1.9E-18 125.4 18.2 246 142-399 18-269 (275)
51 2q7f_A YRRB protein; TPR, prot 99.6 2.2E-13 7.4E-18 119.0 21.3 208 235-452 24-231 (243)
52 2h6f_A Protein farnesyltransfe 99.6 1E-12 3.5E-17 122.2 25.1 148 130-283 98-246 (382)
53 2q7f_A YRRB protein; TPR, prot 99.6 3.8E-13 1.3E-17 117.5 19.6 197 131-334 25-221 (243)
54 2h6f_A Protein farnesyltransfe 99.6 2.2E-12 7.5E-17 120.0 25.7 249 94-352 97-364 (382)
55 4a1s_A PINS, partner of inscut 99.5 5.9E-13 2E-17 126.3 20.6 135 308-442 225-372 (411)
56 3sf4_A G-protein-signaling mod 99.5 4.6E-13 1.6E-17 126.5 19.4 300 164-464 9-363 (406)
57 3e4b_A ALGK; tetratricopeptide 99.5 1.1E-12 3.8E-17 125.7 21.7 336 71-444 16-389 (452)
58 3e4b_A ALGK; tetratricopeptide 99.5 2.3E-12 7.8E-17 123.5 23.7 336 99-471 8-381 (452)
59 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.8E-17 120.2 18.9 272 171-443 12-333 (338)
60 4a1s_A PINS, partner of inscut 99.5 1.1E-12 3.8E-17 124.4 18.6 267 206-473 55-368 (411)
61 3sf4_A G-protein-signaling mod 99.5 1.1E-12 3.8E-17 123.9 18.4 300 128-429 8-363 (406)
62 3nf1_A KLC 1, kinesin light ch 99.5 9.9E-13 3.4E-17 119.4 15.0 238 202-442 30-307 (311)
63 2ond_A Cleavage stimulation fa 99.5 1.5E-10 5.2E-15 105.0 29.3 220 216-443 33-271 (308)
64 2ond_A Cleavage stimulation fa 99.5 1.3E-10 4.5E-15 105.4 28.7 184 181-370 81-270 (308)
65 3ro2_A PINS homolog, G-protein 99.4 4.5E-12 1.5E-16 116.2 18.5 133 273-405 185-332 (338)
66 3ulq_A Response regulator aspa 99.4 6.2E-11 2.1E-15 111.2 26.5 299 138-442 21-368 (383)
67 4abn_A Tetratricopeptide repea 99.4 1.4E-11 4.9E-16 118.7 20.8 193 233-436 101-315 (474)
68 3vtx_A MAMA; tetratricopeptide 99.4 9.9E-11 3.4E-15 97.3 22.8 165 199-369 5-169 (184)
69 4abn_A Tetratricopeptide repea 99.4 3E-11 1E-15 116.5 22.3 214 249-470 83-314 (474)
70 3ulq_A Response regulator aspa 99.4 2.7E-11 9.2E-16 113.7 21.2 296 105-405 23-368 (383)
71 3vtx_A MAMA; tetratricopeptide 99.4 1E-10 3.4E-15 97.3 22.4 166 163-334 4-169 (184)
72 3nf1_A KLC 1, kinesin light ch 99.4 1.8E-11 6.3E-16 110.9 18.2 240 165-405 28-307 (311)
73 4e6h_A MRNA 3'-END-processing 99.4 6.2E-09 2.1E-13 103.4 36.9 406 57-472 64-565 (679)
74 1hz4_A MALT regulatory protein 99.4 8.7E-10 3E-14 102.9 28.1 297 137-443 22-350 (373)
75 3q15_A PSP28, response regulat 99.4 5.8E-10 2E-14 104.3 26.7 232 205-441 107-364 (378)
76 1hz4_A MALT regulatory protein 99.3 7.9E-10 2.7E-14 103.2 26.8 298 167-464 17-352 (373)
77 3as5_A MAMA; tetratricopeptide 99.3 3.3E-10 1.1E-14 93.8 21.4 162 131-298 10-171 (186)
78 4e6h_A MRNA 3'-END-processing 99.3 3E-08 1E-12 98.5 38.6 375 74-456 119-582 (679)
79 3q15_A PSP28, response regulat 99.3 5.6E-10 1.9E-14 104.5 24.5 230 239-472 106-360 (378)
80 3as5_A MAMA; tetratricopeptide 99.3 4.9E-10 1.7E-14 92.8 21.6 164 165-334 9-172 (186)
81 3edt_B KLC 2, kinesin light ch 99.3 1.3E-10 4.5E-15 103.5 16.2 208 234-442 43-281 (283)
82 4i17_A Hypothetical protein; T 99.2 1.8E-09 6.1E-14 93.1 22.0 207 232-455 5-221 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.2 4.1E-10 1.4E-14 113.1 19.0 167 127-299 7-173 (723)
84 4gyw_A UDP-N-acetylglucosamine 99.2 8.3E-10 2.8E-14 110.9 21.2 164 271-440 9-172 (723)
85 3edt_B KLC 2, kinesin light ch 99.2 2.2E-10 7.6E-15 102.0 14.7 205 164-369 43-280 (283)
86 4i17_A Hypothetical protein; T 99.2 3.5E-09 1.2E-13 91.2 20.4 197 127-336 5-210 (228)
87 3qky_A Outer membrane assembly 99.1 1.4E-08 4.7E-13 89.5 22.1 90 380-470 152-254 (261)
88 3mv2_B Coatomer subunit epsilo 99.1 2.8E-08 9.5E-13 87.9 22.5 245 137-406 21-283 (310)
89 3mv2_B Coatomer subunit epsilo 99.1 6.7E-08 2.3E-12 85.4 24.8 183 183-376 85-286 (310)
90 2fo7_A Synthetic consensus TPR 99.1 1.4E-08 4.9E-13 78.8 17.1 125 169-298 6-130 (136)
91 3qky_A Outer membrane assembly 99.0 2.7E-08 9.1E-13 87.7 20.5 59 345-405 152-224 (261)
92 1qqe_A Vesicular transport pro 99.0 1.8E-08 6.2E-13 90.4 19.0 127 173-299 46-186 (292)
93 2fo7_A Synthetic consensus TPR 99.0 3E-08 1E-12 77.0 17.8 128 202-334 4-131 (136)
94 1qqe_A Vesicular transport pro 99.0 2.2E-08 7.6E-13 89.8 19.1 175 179-368 32-226 (292)
95 2uy1_A Cleavage stimulation fa 99.0 9.3E-07 3.2E-11 85.1 29.0 354 94-472 15-408 (493)
96 3urz_A Uncharacterized protein 98.9 1.1E-07 3.6E-12 80.6 18.3 131 240-378 60-192 (208)
97 3rjv_A Putative SEL1 repeat pr 98.9 2.2E-07 7.7E-12 78.8 20.4 160 273-443 20-198 (212)
98 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.6E-07 5.3E-12 80.7 19.6 192 233-443 3-214 (225)
99 2yhc_A BAMD, UPF0169 lipoprote 98.9 3E-07 1E-11 78.9 20.9 201 165-406 5-214 (225)
100 3rjv_A Putative SEL1 repeat pr 98.9 3E-07 1E-11 78.0 20.4 176 217-406 4-198 (212)
101 2pzi_A Probable serine/threoni 98.9 7E-08 2.4E-12 97.3 19.0 174 175-356 402-583 (681)
102 4ga2_A E3 SUMO-protein ligase 98.9 1.3E-08 4.5E-13 81.2 10.9 143 315-463 6-149 (150)
103 3dra_A Protein farnesyltransfe 98.9 1.7E-06 5.9E-11 77.1 25.3 221 107-334 46-286 (306)
104 2r5s_A Uncharacterized protein 98.9 4.7E-08 1.6E-12 80.3 14.2 161 132-297 9-170 (176)
105 3dra_A Protein farnesyltransfe 98.9 3E-06 1E-10 75.6 26.6 231 216-453 50-298 (306)
106 3urz_A Uncharacterized protein 98.9 1.2E-07 4E-12 80.3 16.8 133 170-310 60-194 (208)
107 3qou_A Protein YBBN; thioredox 98.9 8.2E-08 2.8E-12 85.8 16.5 166 127-297 115-281 (287)
108 2pzi_A Probable serine/threoni 98.9 3.2E-07 1.1E-11 92.5 22.2 173 210-391 402-583 (681)
109 3qou_A Protein YBBN; thioredox 98.8 8E-08 2.7E-12 85.9 15.4 155 308-468 119-275 (287)
110 4ga2_A E3 SUMO-protein ligase 98.8 2.2E-08 7.4E-13 80.0 10.4 119 141-262 9-128 (150)
111 2ifu_A Gamma-SNAP; membrane fu 98.8 7.3E-08 2.5E-12 87.1 15.1 176 212-403 29-222 (307)
112 2vsy_A XCC0866; transferase, g 98.8 1.7E-07 6E-12 92.6 18.9 154 247-406 2-158 (568)
113 2vsy_A XCC0866; transferase, g 98.8 1.3E-07 4.4E-12 93.5 18.0 153 108-264 3-158 (568)
114 2r5s_A Uncharacterized protein 98.8 1.2E-07 4.2E-12 77.8 14.9 161 98-262 10-172 (176)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 2.1E-07 7.3E-12 84.0 17.0 225 142-397 4-253 (307)
116 3u3w_A Transcriptional activat 98.7 4E-06 1.4E-10 75.1 22.9 97 344-441 158-265 (293)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.5E-06 5.1E-11 73.6 18.7 129 272-405 7-150 (213)
118 3u3w_A Transcriptional activat 98.7 3.4E-06 1.2E-10 75.5 21.7 163 241-404 82-265 (293)
119 2qfc_A PLCR protein; TPR, HTH, 98.7 8.7E-06 3E-10 72.8 24.2 169 273-441 77-265 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.9E-06 6.5E-11 72.9 18.7 128 168-300 10-150 (213)
121 3q7a_A Farnesyltransferase alp 98.7 2E-05 6.8E-10 71.1 25.7 178 103-287 63-258 (349)
122 4gco_A Protein STI-1; structur 98.7 1.2E-06 4.1E-11 67.3 14.9 110 342-456 14-123 (126)
123 1na0_A Designed protein CTPR3; 98.7 1.7E-06 5.8E-11 65.8 15.9 115 341-460 9-123 (125)
124 2uy1_A Cleavage stimulation fa 98.6 6.8E-05 2.3E-09 72.1 30.4 344 72-441 28-412 (493)
125 2vyi_A SGTA protein; chaperone 98.6 1.6E-06 5.6E-11 66.5 15.1 119 341-464 12-130 (131)
126 2lni_A Stress-induced-phosphop 98.6 1.6E-06 5.4E-11 66.9 14.5 118 340-462 15-132 (133)
127 2qfc_A PLCR protein; TPR, HTH, 98.6 4.8E-06 1.6E-10 74.5 19.6 169 130-298 76-264 (293)
128 1a17_A Serine/threonine protei 98.6 2.3E-06 7.8E-11 69.0 15.5 94 167-262 16-109 (166)
129 3q7a_A Farnesyltransferase alp 98.6 6.3E-05 2.2E-09 67.8 25.5 170 179-355 69-256 (349)
130 1na0_A Designed protein CTPR3; 98.6 2.4E-06 8.3E-11 64.9 14.3 95 166-262 11-105 (125)
131 1a17_A Serine/threonine protei 98.5 4.8E-06 1.6E-10 67.1 16.4 128 308-440 15-144 (166)
132 2lni_A Stress-induced-phosphop 98.5 2.9E-06 1E-10 65.4 14.4 98 163-262 15-112 (133)
133 3gyz_A Chaperone protein IPGC; 98.5 8.3E-06 2.8E-10 64.6 17.0 103 341-449 36-138 (151)
134 3gw4_A Uncharacterized protein 98.5 1.8E-06 6.2E-11 72.3 14.1 100 343-442 68-176 (203)
135 4gco_A Protein STI-1; structur 98.5 2.9E-06 1E-10 65.1 14.0 94 167-262 16-109 (126)
136 4f3v_A ESX-1 secretion system 98.5 2.6E-06 8.8E-11 74.3 15.0 131 310-443 106-238 (282)
137 3gw4_A Uncharacterized protein 98.5 1.9E-06 6.4E-11 72.2 13.9 134 234-367 26-173 (203)
138 2vyi_A SGTA protein; chaperone 98.5 3.5E-06 1.2E-10 64.6 13.8 94 167-262 15-108 (131)
139 2c2l_A CHIP, carboxy terminus 98.5 7.2E-07 2.5E-11 79.3 10.9 97 164-262 4-100 (281)
140 2e2e_A Formate-dependent nitri 98.5 2E-06 7E-11 70.4 12.7 121 318-443 22-145 (177)
141 3gyz_A Chaperone protein IPGC; 98.5 1.6E-06 5.4E-11 68.8 11.3 98 199-300 36-133 (151)
142 4f3v_A ESX-1 secretion system 98.5 3.1E-06 1.1E-10 73.8 14.0 127 239-370 107-237 (282)
143 2vgx_A Chaperone SYCD; alterna 98.5 2E-06 6.7E-11 68.2 11.9 99 341-443 21-119 (148)
144 2e2e_A Formate-dependent nitri 98.5 1.5E-06 5.2E-11 71.2 11.5 120 176-300 22-144 (177)
145 2c2l_A CHIP, carboxy terminus 98.4 1.1E-06 3.8E-11 78.1 11.0 95 200-298 5-99 (281)
146 1p5q_A FKBP52, FK506-binding p 98.4 5.8E-06 2E-10 75.5 15.7 146 270-440 146-292 (336)
147 1elw_A TPR1-domain of HOP; HOP 98.4 1.5E-05 5E-10 59.7 15.0 109 342-455 5-113 (118)
148 2vgx_A Chaperone SYCD; alterna 98.4 2.6E-06 9E-11 67.5 10.6 93 202-298 24-116 (148)
149 1p5q_A FKBP52, FK506-binding p 98.4 6.7E-06 2.3E-10 75.1 14.7 124 342-469 148-285 (336)
150 2xcb_A PCRH, regulatory protei 98.4 8.8E-06 3E-10 63.9 13.3 98 342-443 19-116 (142)
151 3dss_A Geranylgeranyl transfer 98.4 0.00054 1.8E-08 61.5 26.3 81 216-300 91-174 (331)
152 2dba_A Smooth muscle cell asso 98.4 2E-05 6.8E-10 61.9 15.5 112 340-457 27-142 (148)
153 3q49_B STIP1 homology and U bo 98.3 1.2E-05 4E-10 62.4 13.2 99 340-442 8-106 (137)
154 1elw_A TPR1-domain of HOP; HOP 98.3 2.4E-05 8.2E-10 58.5 14.6 95 166-262 6-100 (118)
155 3upv_A Heat shock protein STI1 98.3 1.5E-05 5.3E-10 60.8 13.5 98 342-443 5-102 (126)
156 3sz7_A HSC70 cochaperone (SGT) 98.3 1.1E-05 3.8E-10 65.0 12.9 97 307-405 12-108 (164)
157 4gcn_A Protein STI-1; structur 98.3 2.6E-05 8.7E-10 59.8 13.7 109 343-454 10-122 (127)
158 3dss_A Geranylgeranyl transfer 98.3 0.0014 4.7E-08 58.8 26.7 199 250-458 90-319 (331)
159 2xcb_A PCRH, regulatory protei 98.3 1.1E-05 3.9E-10 63.2 11.9 88 206-297 25-112 (142)
160 2fbn_A 70 kDa peptidylprolyl i 98.3 3E-05 1E-09 64.7 15.1 124 306-433 38-176 (198)
161 2kck_A TPR repeat; tetratricop 98.3 1.7E-05 5.7E-10 58.8 12.1 94 202-299 9-105 (112)
162 1elr_A TPR2A-domain of HOP; HO 98.3 1.6E-05 5.6E-10 60.7 12.4 115 342-459 5-123 (131)
163 4b4t_Q 26S proteasome regulato 98.2 4.8E-05 1.6E-09 72.1 18.0 198 207-405 12-245 (434)
164 2kck_A TPR repeat; tetratricop 98.2 2E-05 6.7E-10 58.4 12.3 99 163-263 5-106 (112)
165 3upv_A Heat shock protein STI1 98.2 4.3E-05 1.5E-09 58.3 14.4 93 202-298 7-99 (126)
166 2fbn_A 70 kDa peptidylprolyl i 98.2 3.9E-05 1.3E-09 64.0 14.4 147 244-396 14-176 (198)
167 4gcn_A Protein STI-1; structur 98.2 5E-05 1.7E-09 58.1 13.8 97 202-299 11-111 (127)
168 4b4t_Q 26S proteasome regulato 98.2 0.00014 4.7E-09 68.9 19.8 199 171-369 11-244 (434)
169 3sz7_A HSC70 cochaperone (SGT) 98.2 2.8E-05 9.7E-10 62.6 12.7 99 163-263 10-108 (164)
170 3q49_B STIP1 homology and U bo 98.2 3.9E-05 1.3E-09 59.4 13.1 96 199-298 9-104 (137)
171 1elr_A TPR2A-domain of HOP; HO 98.2 1.9E-05 6.6E-10 60.4 11.2 95 167-262 7-107 (131)
172 2xev_A YBGF; tetratricopeptide 98.2 7.5E-05 2.6E-09 57.0 14.4 97 345-443 6-106 (129)
173 2dba_A Smooth muscle cell asso 98.1 7.7E-05 2.6E-09 58.4 14.5 97 163-262 27-127 (148)
174 3ro3_A PINS homolog, G-protein 98.1 2.5E-05 8.6E-10 62.2 11.4 100 343-442 51-158 (164)
175 3k9i_A BH0479 protein; putativ 98.1 7.6E-06 2.6E-10 61.7 7.1 87 354-443 3-91 (117)
176 1hxi_A PEX5, peroxisome target 98.1 4.2E-05 1.4E-09 58.0 11.2 96 344-443 20-115 (121)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.9E-05 1.7E-09 72.6 13.9 134 305-442 267-415 (457)
178 3rkv_A Putative peptidylprolyl 98.0 4.1E-05 1.4E-09 61.5 11.2 97 344-443 14-127 (162)
179 1ihg_A Cyclophilin 40; ppiase 98.0 5.5E-05 1.9E-09 69.9 13.0 90 376-469 273-362 (370)
180 1hxi_A PEX5, peroxisome target 98.0 4.7E-05 1.6E-09 57.7 10.4 91 170-262 23-113 (121)
181 1wao_1 Serine/threonine protei 98.0 2.8E-05 9.6E-10 74.6 11.2 88 316-405 16-103 (477)
182 3ro3_A PINS homolog, G-protein 98.0 6.2E-05 2.1E-09 59.8 11.4 98 201-298 11-116 (164)
183 2xev_A YBGF; tetratricopeptide 98.0 0.00029 9.8E-09 53.7 14.4 91 170-262 8-104 (129)
184 3k9i_A BH0479 protein; putativ 97.9 2.7E-05 9.1E-10 58.7 7.6 85 177-262 3-89 (117)
185 1wao_1 Serine/threonine protei 97.9 3.5E-05 1.2E-09 74.0 9.2 119 172-295 14-134 (477)
186 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00021 7.2E-09 68.2 14.5 150 249-404 249-414 (457)
187 3n71_A Histone lysine methyltr 97.8 7.8E-05 2.7E-09 71.2 10.8 127 315-441 318-463 (490)
188 1ihg_A Cyclophilin 40; ppiase 97.8 0.00016 5.4E-09 66.8 12.6 89 234-326 273-361 (370)
189 2hr2_A Hypothetical protein; a 97.8 0.00032 1.1E-08 55.1 12.3 96 344-442 14-131 (159)
190 1dce_A Protein (RAB geranylger 97.8 0.0012 4.3E-08 64.4 19.0 139 322-466 89-244 (567)
191 2l6j_A TPR repeat-containing p 97.8 0.00014 4.6E-09 53.8 9.4 91 376-470 4-100 (111)
192 3n71_A Histone lysine methyltr 97.8 0.00019 6.4E-09 68.6 12.3 89 244-332 319-419 (490)
193 3rkv_A Putative peptidylprolyl 97.8 0.00038 1.3E-08 55.6 12.4 62 200-262 64-125 (162)
194 1klx_A Cysteine rich protein B 97.7 0.0015 5.3E-08 50.5 14.3 110 321-443 10-127 (138)
195 1klx_A Cysteine rich protein B 97.7 0.0012 4.1E-08 51.1 13.6 15 248-262 75-89 (138)
196 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00012 4E-09 66.8 8.4 131 306-442 179-328 (338)
197 1dce_A Protein (RAB geranylger 97.7 0.0025 8.6E-08 62.3 18.3 174 107-287 42-242 (567)
198 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00027 9.2E-09 64.4 10.6 60 308-368 232-291 (338)
199 1na3_A Designed protein CTPR2; 97.6 0.00075 2.6E-08 47.5 10.9 81 377-461 10-90 (91)
200 2hr2_A Hypothetical protein; a 97.6 0.0013 4.4E-08 51.7 12.6 61 236-299 59-130 (159)
201 2kat_A Uncharacterized protein 97.4 0.0013 4.6E-08 48.8 10.5 99 360-462 4-103 (115)
202 2kat_A Uncharacterized protein 97.4 0.0016 5.6E-08 48.3 10.0 78 183-262 4-81 (115)
203 1zu2_A Mitochondrial import re 97.4 0.00077 2.6E-08 52.9 8.2 102 353-460 14-136 (158)
204 2l6j_A TPR repeat-containing p 97.3 0.00066 2.3E-08 49.9 7.6 59 167-226 7-65 (111)
205 3mkq_A Coatomer beta'-subunit; 97.3 0.025 8.6E-07 58.1 22.0 193 209-471 609-806 (814)
206 1na3_A Designed protein CTPR2; 97.3 0.0034 1.1E-07 44.0 10.6 60 202-262 12-71 (91)
207 3ma5_A Tetratricopeptide repea 97.3 0.0017 5.7E-08 47.0 8.7 85 375-462 6-91 (100)
208 3mkq_A Coatomer beta'-subunit; 97.1 0.013 4.3E-07 60.3 16.7 128 137-299 607-735 (814)
209 1zu2_A Mitochondrial import re 97.0 0.0011 3.9E-08 51.9 5.9 84 143-228 16-120 (158)
210 3ma5_A Tetratricopeptide repea 96.9 0.006 2E-07 43.9 9.1 60 235-297 8-67 (100)
211 3qww_A SET and MYND domain-con 96.9 0.0061 2.1E-07 57.2 11.2 88 354-441 311-410 (433)
212 3qwp_A SET and MYND domain-con 96.9 0.0048 1.6E-07 57.9 10.0 94 348-441 294-399 (429)
213 3qww_A SET and MYND domain-con 96.6 0.0084 2.9E-07 56.2 9.7 61 272-332 341-408 (433)
214 2kc7_A BFR218_protein; tetratr 96.6 0.025 8.4E-07 40.2 10.2 56 349-405 8-64 (99)
215 1wy6_A Hypothetical protein ST 96.6 0.14 4.9E-06 38.2 14.8 137 247-407 20-156 (172)
216 3ly7_A Transcriptional activat 96.5 0.052 1.8E-06 49.0 13.6 34 125-158 190-228 (372)
217 3bee_A Putative YFRE protein; 96.5 0.042 1.4E-06 38.8 10.7 67 374-443 4-73 (93)
218 3qwp_A SET and MYND domain-con 96.5 0.015 5.1E-07 54.5 10.4 61 272-332 330-397 (429)
219 3ly7_A Transcriptional activat 96.5 0.062 2.1E-06 48.5 13.7 70 305-378 276-345 (372)
220 3mkq_B Coatomer subunit alpha; 96.4 0.26 8.9E-06 39.2 16.1 102 137-259 13-114 (177)
221 3mkq_B Coatomer subunit alpha; 96.2 0.34 1.2E-05 38.5 16.9 44 211-260 17-60 (177)
222 2kc7_A BFR218_protein; tetratr 96.1 0.014 4.8E-07 41.6 6.5 27 201-227 37-63 (99)
223 1pc2_A Mitochondria fission pr 96.0 0.07 2.4E-06 41.3 10.2 85 357-443 14-101 (152)
224 3bee_A Putative YFRE protein; 95.9 0.17 5.9E-06 35.5 11.1 47 215-262 25-71 (93)
225 2v5f_A Prolyl 4-hydroxylase su 95.4 0.24 8.1E-06 35.6 10.7 31 413-443 46-76 (104)
226 1wy6_A Hypothetical protein ST 95.4 0.59 2E-05 35.0 14.9 140 210-373 18-157 (172)
227 1pc2_A Mitochondria fission pr 95.3 0.14 4.9E-06 39.5 9.3 83 289-375 16-103 (152)
228 2v5f_A Prolyl 4-hydroxylase su 94.9 0.32 1.1E-05 34.9 10.2 61 202-262 8-74 (104)
229 3lvg_A Clathrin heavy chain 1; 94.9 7.4E-05 2.5E-09 68.8 -11.5 214 128-363 53-284 (624)
230 3u64_A Protein TP_0956; tetrat 94.5 0.45 1.6E-05 41.2 11.4 84 358-445 180-272 (301)
231 4h7y_A Dual specificity protei 94.3 0.7 2.4E-05 35.4 10.6 115 340-459 12-139 (161)
232 1nzn_A CGI-135 protein, fissio 94.1 0.58 2E-05 34.7 9.7 89 353-443 13-104 (126)
233 3lvg_A Clathrin heavy chain 1; 93.9 0.00036 1.2E-08 64.3 -9.3 186 93-296 82-287 (624)
234 4b4t_P 26S proteasome regulato 93.6 4.7 0.00016 37.7 18.6 190 178-368 30-245 (445)
235 2ff4_A Probable regulatory pro 93.6 2.6 8.8E-05 38.7 15.5 69 382-453 177-250 (388)
236 4h7y_A Dual specificity protei 93.4 1.5 5E-05 33.6 11.0 49 213-262 74-122 (161)
237 4gns_B Protein CSD3, chitin bi 93.2 0.74 2.5E-05 46.0 11.8 124 170-298 254-398 (754)
238 3u64_A Protein TP_0956; tetrat 93.1 1.2 4.1E-05 38.5 11.5 81 216-302 180-271 (301)
239 1nzn_A CGI-135 protein, fissio 92.7 0.87 3E-05 33.8 8.7 67 304-370 33-103 (126)
240 1v54_E Cytochrome C oxidase po 92.5 0.99 3.4E-05 31.7 8.1 72 101-173 16-88 (109)
241 4fhn_B Nucleoporin NUP120; pro 92.3 2.3 7.8E-05 45.4 15.0 185 277-470 818-1042(1139)
242 4fhn_B Nucleoporin NUP120; pro 92.0 6.9 0.00024 41.8 18.2 150 167-324 815-989 (1139)
243 4b4t_P 26S proteasome regulato 91.9 8.1 0.00028 36.1 19.2 246 212-461 29-306 (445)
244 1qsa_A Protein (soluble lytic 91.6 11 0.00037 36.9 25.1 252 133-404 76-347 (618)
245 2ff4_A Probable regulatory pro 91.1 1.3 4.4E-05 40.7 10.1 70 236-308 173-247 (388)
246 4gns_B Protein CSD3, chitin bi 90.9 1.3 4.6E-05 44.2 10.5 51 386-439 347-397 (754)
247 1v54_E Cytochrome C oxidase po 90.5 3 0.0001 29.3 8.8 49 180-228 26-74 (109)
248 2y69_E Cytochrome C oxidase su 90.4 1.8 6.2E-05 32.2 8.0 71 102-173 60-131 (152)
249 4ady_A RPN2, 26S proteasome re 89.9 19 0.00066 37.0 27.6 258 173-441 383-657 (963)
250 4ady_A RPN2, 26S proteasome re 89.1 22 0.00076 36.5 25.4 314 139-465 384-723 (963)
251 3txn_A 26S proteasome regulato 87.8 9.5 0.00032 34.9 13.0 168 234-403 19-208 (394)
252 2y69_E Cytochrome C oxidase su 87.5 5.3 0.00018 29.8 8.8 59 182-241 71-129 (152)
253 3o48_A Mitochondria fission 1 86.8 8.1 0.00028 28.8 10.8 71 371-443 35-108 (134)
254 3lpz_A GET4 (YOR164C homolog); 84.0 22 0.00076 31.5 19.5 113 309-436 38-159 (336)
255 2wpv_A GET4, UPF0363 protein Y 82.7 24 0.00083 30.9 16.9 114 308-436 35-157 (312)
256 3eiq_C Programmed cell death p 82.4 27 0.00094 31.3 13.2 58 132-191 57-116 (358)
257 4b4t_R RPN7, 26S proteasome re 82.0 12 0.0004 34.9 11.1 61 201-261 133-195 (429)
258 4b4t_R RPN7, 26S proteasome re 81.4 11 0.00038 35.0 10.7 98 308-405 133-237 (429)
259 1wdy_A 2-5A-dependent ribonucl 81.2 7.6 0.00026 33.2 9.2 21 169-189 7-27 (285)
260 2p58_C Putative type III secre 80.1 13 0.00044 26.1 8.1 15 175-189 51-65 (116)
261 2uwj_G Type III export protein 79.2 12 0.00042 26.1 7.3 50 174-229 49-98 (115)
262 1y8m_A FIS1; mitochondria, unk 78.8 19 0.00065 27.2 12.6 69 373-443 36-107 (144)
263 1zbp_A Hypothetical protein VP 78.7 8.1 0.00028 32.9 7.9 28 234-261 31-58 (273)
264 3o48_A Mitochondria fission 1 78.4 19 0.00064 26.9 10.0 73 302-376 36-111 (134)
265 3ffl_A Anaphase-promoting comp 78.1 10 0.00036 29.5 7.7 59 204-262 25-91 (167)
266 3ffl_A Anaphase-promoting comp 77.3 21 0.00073 27.8 9.2 115 310-439 24-148 (167)
267 1wdy_A 2-5A-dependent ribonucl 77.2 15 0.0005 31.3 9.7 54 134-188 7-60 (285)
268 3lpz_A GET4 (YOR164C homolog); 76.2 41 0.0014 29.8 24.1 169 235-441 36-215 (336)
269 3esl_A Checkpoint serine/threo 76.2 29 0.001 28.0 10.2 54 356-409 94-148 (202)
270 1k1a_A B-cell lymphoma 3-encod 73.8 27 0.00091 28.8 10.3 16 316-331 86-101 (241)
271 3txn_A 26S proteasome regulato 70.7 63 0.0022 29.4 26.1 293 131-444 21-345 (394)
272 1n11_A Ankyrin; clathrin, BAND 68.9 41 0.0014 30.9 11.2 40 424-467 352-393 (437)
273 1y8m_A FIS1; mitochondria, unk 68.8 35 0.0012 25.8 12.0 71 303-375 36-109 (144)
274 3eiq_C Programmed cell death p 68.1 68 0.0023 28.8 13.2 73 167-242 57-131 (358)
275 2uwj_G Type III export protein 66.9 30 0.001 24.2 8.4 83 109-202 21-105 (115)
276 2p58_C Putative type III secre 66.2 31 0.0011 24.2 9.5 83 109-202 22-106 (116)
277 3ltm_A Alpha-REP4; protein eng 66.0 50 0.0017 26.5 18.9 121 128-261 63-183 (211)
278 1k1a_A B-cell lymphoma 3-encod 65.1 54 0.0018 26.8 10.3 83 103-190 15-102 (241)
279 3eu9_A Huntingtin-interacting 65.0 13 0.00044 30.7 6.3 19 135-153 45-63 (240)
280 3hra_A Ankyrin repeat family p 62.3 20 0.00068 28.6 6.8 42 432-473 157-200 (201)
281 1qsa_A Protein (soluble lytic 60.3 1.3E+02 0.0045 29.4 31.3 90 84-179 62-151 (618)
282 2zu6_B Programmed cell death p 59.5 41 0.0014 29.4 8.5 61 344-408 169-234 (307)
283 3eu9_A Huntingtin-interacting 59.4 41 0.0014 27.4 8.5 49 138-188 15-63 (240)
284 1n11_A Ankyrin; clathrin, BAND 59.3 69 0.0024 29.3 10.8 331 100-474 17-367 (437)
285 4a1g_A Mitotic checkpoint seri 57.5 62 0.0021 24.8 9.4 55 394-449 83-137 (152)
286 3jxi_A Vanilloid receptor-rela 56.6 7.8 0.00027 32.8 3.4 19 455-473 229-247 (260)
287 2d2s_A Exocyst complex compone 55.7 51 0.0017 27.5 8.1 20 136-155 25-44 (235)
288 3esl_A Checkpoint serine/threo 55.6 80 0.0027 25.5 11.9 55 285-339 93-148 (202)
289 4a1g_A Mitotic checkpoint seri 55.6 67 0.0023 24.6 11.4 50 148-197 84-134 (152)
290 2wpv_A GET4, UPF0363 protein Y 54.6 1.1E+02 0.0038 26.7 21.9 169 235-441 34-216 (312)
291 1ug3_A EIF4GI, eukaryotic prot 54.4 84 0.0029 27.9 9.9 25 237-261 14-38 (339)
292 3pvs_A Replication-associated 54.4 1.4E+02 0.0047 27.8 12.7 54 211-264 267-325 (447)
293 2d2s_A Exocyst complex compone 54.0 77 0.0026 26.4 8.9 89 170-261 24-118 (235)
294 3ltj_A Alpharep-4; protein eng 53.2 83 0.0028 24.9 19.9 122 128-262 58-179 (201)
295 4fke_A Aminopeptidase N; zinc 53.2 2.1E+02 0.0072 29.5 17.6 160 239-404 691-859 (909)
296 3mv2_A Coatomer subunit alpha; 52.6 80 0.0027 27.7 8.9 18 317-334 125-142 (325)
297 2zu6_B Programmed cell death p 52.3 1.2E+02 0.0041 26.5 11.4 69 274-343 169-239 (307)
298 3kea_A K1L; tropism, ANK repea 51.0 50 0.0017 28.2 7.8 19 136-154 35-53 (285)
299 2xig_A Ferric uptake regulatio 50.4 60 0.0021 24.7 7.2 63 400-465 16-78 (150)
300 3kea_A K1L; tropism, ANK repea 49.8 69 0.0024 27.3 8.5 78 105-188 39-116 (285)
301 3hra_A Ankyrin repeat family p 49.0 59 0.002 25.6 7.6 14 326-339 158-171 (201)
302 3t8k_A Uncharacterized protein 48.8 87 0.003 24.7 8.4 26 173-198 44-69 (186)
303 1ug3_A EIF4GI, eukaryotic prot 46.7 1.4E+02 0.0048 26.4 10.1 26 132-157 14-39 (339)
304 3t8k_A Uncharacterized protein 46.6 1E+02 0.0036 24.2 10.1 158 282-444 14-182 (186)
305 1zbp_A Hypothetical protein VP 46.1 1.4E+02 0.0048 25.4 15.5 56 242-300 5-60 (273)
306 2fe3_A Peroxide operon regulat 45.8 54 0.0019 24.7 6.3 63 400-465 11-73 (145)
307 3jxi_A Vanilloid receptor-rela 45.7 15 0.0005 31.0 3.4 16 352-367 233-248 (260)
308 2nsz_A Programmed cell death p 45.5 86 0.0029 23.1 7.2 108 343-464 9-118 (129)
309 1bpo_A Protein (clathrin); cla 44.2 2E+02 0.0069 26.8 14.1 95 123-219 355-449 (494)
310 3aji_A 26S proteasome non-ATPa 43.9 82 0.0028 25.5 7.8 14 175-188 14-27 (231)
311 2ijq_A Hypothetical protein; s 43.7 1.1E+02 0.0038 23.6 8.2 52 176-227 44-103 (161)
312 2fe3_A Peroxide operon regulat 43.6 69 0.0024 24.2 6.6 58 332-390 13-70 (145)
313 2wvi_A Mitotic checkpoint seri 43.5 1.1E+02 0.0039 23.7 9.4 45 115-159 81-126 (164)
314 1mzb_A Ferric uptake regulatio 43.2 56 0.0019 24.3 5.9 62 401-465 8-70 (136)
315 2keb_A DNA polymerase subunit 42.7 76 0.0026 22.0 5.7 58 111-170 26-88 (101)
316 3c1d_A Protein ORAA, regulator 42.4 1.1E+02 0.0039 23.4 12.1 48 358-407 47-94 (159)
317 4aez_C MAD3, mitotic spindle c 41.6 56 0.0019 26.9 5.9 74 87-163 110-184 (223)
318 4g8k_A 2-5A-dependent ribonucl 40.1 1.8E+02 0.0063 25.2 12.5 49 101-153 29-80 (337)
319 4aez_C MAD3, mitotic spindle c 40.1 72 0.0025 26.2 6.4 52 394-446 132-183 (223)
320 2fu4_A Ferric uptake regulatio 39.5 79 0.0027 20.8 5.7 62 401-465 7-69 (83)
321 1mzb_A Ferric uptake regulatio 39.5 68 0.0023 23.8 5.9 58 332-390 9-67 (136)
322 2xig_A Ferric uptake regulatio 39.4 73 0.0025 24.2 6.1 58 332-390 18-75 (150)
323 4g8k_A 2-5A-dependent ribonucl 39.2 1.9E+02 0.0065 25.1 11.3 21 134-154 27-47 (337)
324 2rfa_A Transient receptor pote 38.9 1.2E+02 0.0042 24.4 8.1 20 424-443 162-181 (232)
325 4ets_A Ferric uptake regulatio 38.7 80 0.0027 24.4 6.3 61 402-465 24-86 (162)
326 2w57_A Ferric uptake regulatio 38.7 65 0.0022 24.5 5.8 62 401-465 7-69 (150)
327 3b7b_A Euchromatic histone-lys 38.4 61 0.0021 26.4 6.2 18 352-369 218-235 (237)
328 3eyy_A Putative iron uptake re 36.6 56 0.0019 24.7 5.0 62 400-465 8-69 (145)
329 3eyy_A Putative iron uptake re 36.5 68 0.0023 24.2 5.5 56 333-390 11-66 (145)
330 2ion_A PDCD4, programmed cell 36.4 78 0.0027 24.2 5.8 63 343-409 11-78 (152)
331 3d5l_A Regulatory protein RECX 36.3 1.8E+02 0.0061 23.8 10.7 27 359-385 94-120 (221)
332 2f6m_A Suppressor protein STP2 36.0 55 0.0019 20.8 3.9 41 416-457 5-45 (65)
333 2b7e_A PRE-mRNA processing pro 36.0 38 0.0013 21.0 3.1 35 430-464 3-38 (59)
334 2fu4_A Ferric uptake regulatio 35.9 92 0.0031 20.4 6.4 9 361-369 37-45 (83)
335 3aji_A 26S proteasome non-ATPa 35.8 1.2E+02 0.0043 24.3 7.7 181 240-447 9-199 (231)
336 2ion_A PDCD4, programmed cell 35.0 1.5E+02 0.0051 22.6 8.8 24 238-261 13-36 (152)
337 2wvi_A Mitotic checkpoint seri 34.8 1.6E+02 0.0054 22.8 10.8 53 395-448 79-131 (164)
338 3kae_A CDC27, possible protein 34.5 1.7E+02 0.0057 23.0 9.5 58 131-194 34-92 (242)
339 4fke_A Aminopeptidase N; zinc 34.4 4E+02 0.014 27.4 17.1 158 203-369 690-859 (909)
340 2w57_A Ferric uptake regulatio 34.3 79 0.0027 24.0 5.6 34 357-390 33-66 (150)
341 2o03_A Probable zinc uptake re 34.2 49 0.0017 24.4 4.3 48 418-465 15-62 (131)
342 2ijq_A Hypothetical protein; s 33.3 1.7E+02 0.0057 22.6 8.4 51 319-369 45-103 (161)
343 2r9g_A AAA ATPase, central reg 33.2 1.9E+02 0.0065 23.3 9.7 60 347-407 17-84 (204)
344 2f8y_A Notch homolog 1, transl 32.6 1.9E+02 0.0064 23.0 8.8 181 277-474 28-214 (223)
345 3mwm_A ZUR, putative metal upt 32.3 49 0.0017 24.8 4.0 50 417-466 17-66 (139)
346 3b7b_A Euchromatic histone-lys 32.2 99 0.0034 25.1 6.5 51 349-404 182-235 (237)
347 4gq2_M Nucleoporin NUP120; bet 31.8 3.2E+02 0.011 28.3 11.3 110 347-462 816-950 (950)
348 2nsz_A Programmed cell death p 31.7 1.5E+02 0.0052 21.7 10.2 64 238-304 11-76 (129)
349 1bd8_A P19INK4D CDK4/6 inhibit 31.0 88 0.003 23.3 5.6 12 459-470 141-152 (156)
350 2rfa_A Transient receptor pote 30.9 2.1E+02 0.0071 23.0 10.1 20 317-336 162-181 (232)
351 2dzn_A Probable 26S proteasome 30.1 61 0.0021 26.2 4.7 54 241-301 6-59 (228)
352 3ltm_A Alpha-REP4; protein eng 29.7 2.1E+02 0.0071 22.6 19.6 154 127-299 31-184 (211)
353 4b4t_S RPN3, 26S proteasome re 29.5 1.7E+02 0.0059 27.7 7.9 123 234-366 231-366 (523)
354 1bpo_A Protein (clathrin); cla 29.4 3.5E+02 0.012 25.2 10.9 106 213-325 343-448 (494)
355 3ltj_A Alpharep-4; protein eng 29.3 2.1E+02 0.007 22.4 20.8 122 162-298 57-178 (201)
356 4ets_A Ferric uptake regulatio 28.7 1.4E+02 0.0049 22.9 6.3 44 100-143 38-83 (162)
357 3pvs_A Replication-associated 28.1 3.6E+02 0.012 24.9 14.0 140 249-407 166-326 (447)
358 3mkr_B Coatomer subunit alpha; 28.0 1.2E+02 0.0041 26.5 6.1 19 316-334 112-130 (320)
359 2r9g_A AAA ATPase, central reg 27.8 2.4E+02 0.0082 22.7 9.1 36 212-248 27-62 (204)
360 2f6m_A Suppressor protein STP2 27.6 1.2E+02 0.0041 19.2 4.5 45 97-142 5-49 (65)
361 3twr_A Tankyrase-2; ankyrin re 27.4 1.1E+02 0.0036 23.1 5.5 121 313-448 12-136 (165)
362 4b4t_O 26S proteasome regulato 26.7 3.6E+02 0.012 24.4 10.2 57 312-368 82-154 (393)
363 2etb_A Transient receptor pote 26.2 1.3E+02 0.0045 24.7 6.3 16 423-438 228-243 (256)
364 3bge_A Predicted ATPase; struc 25.0 2.7E+02 0.0092 22.4 9.1 100 340-441 3-110 (201)
365 1rw2_A ATP-dependent DNA helic 24.8 87 0.003 23.9 4.2 22 31-52 36-57 (152)
366 3dfg_A Xcrecx, regulatory prot 24.5 2.4E+02 0.0082 21.6 10.8 25 447-471 131-156 (162)
367 2dzn_A Probable 26S proteasome 24.2 2.4E+02 0.0083 22.4 7.5 15 105-119 10-24 (228)
368 3qil_A Clathrin heavy chain 1; 24.1 47 0.0016 24.2 2.4 52 379-435 35-86 (125)
369 2y1l_E Darpin-8.4; hydrolase-i 23.4 2.4E+02 0.0082 21.2 7.6 17 456-472 151-167 (169)
370 3ctd_A Putative ATPase, AAA fa 22.9 3.1E+02 0.01 22.3 9.5 61 347-407 38-106 (213)
371 3ygs_P Procaspase 9; apoptosis 22.4 1.5E+02 0.005 20.5 4.7 35 321-359 52-86 (97)
372 3utm_A Tankyrase-1; tankyrase, 22.2 3.7E+02 0.013 23.0 12.5 218 238-474 25-303 (351)
373 1bd8_A P19INK4D CDK4/6 inhibit 22.2 97 0.0033 23.0 4.3 16 139-154 9-24 (156)
374 3ljn_A Hypothetical protein; a 22.2 1.3E+02 0.0043 26.7 5.6 216 233-473 17-266 (364)
375 3qil_A Clathrin heavy chain 1; 21.8 64 0.0022 23.5 2.7 53 96-151 34-86 (125)
376 1q2z_A ATP-dependent DNA helic 21.1 63 0.0022 23.5 2.7 29 111-139 44-73 (120)
377 3twr_A Tankyrase-2; ankyrin re 21.1 2.1E+02 0.0073 21.3 6.2 15 139-153 15-29 (165)
378 2yru_A Steroid receptor RNA ac 21.0 2E+02 0.0068 20.8 5.2 42 116-157 48-89 (118)
379 2o03_A Probable zinc uptake re 21.0 1.4E+02 0.0049 21.8 4.8 9 182-190 28-36 (131)
380 3ctd_A Putative ATPase, AAA fa 20.9 3.4E+02 0.012 22.0 8.4 15 179-193 50-64 (213)
381 4gq2_M Nucleoporin NUP120; bet 20.6 7.2E+02 0.025 25.7 15.0 51 235-285 898-950 (950)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-33 Score=278.44 Aligned_cols=401 Identities=9% Similarity=-0.060 Sum_probs=293.3
Q ss_pred HHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011902 59 STCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 59 ~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 137 (475)
...+..+++.+ ..++.+.|..+|..+.. ..|+...+..++..+...|+++.|..+++.+... +++..+++.++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 34445555554 56778888888877653 2356677778888888888898888888876543 677888888888
Q ss_pred HHHhcCCHHHHHHHHHhccc-C--------------CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCC-------
Q 011902 138 LCEKARLANEAMWVLRKMPE-F--------------DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL------- 195 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~-~--------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------- 195 (475)
+|.+.|++++|.++|+++.. . +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 88888889999888885432 2 2344678888888888888888888888888765331
Q ss_pred ---------------------------------------------------------------CCChhhHHHHHHHHHhc
Q 011902 196 ---------------------------------------------------------------YPDIITYVSMIKGFCNA 212 (475)
Q Consensus 196 ---------------------------------------------------------------~~~~~~~~~li~~~~~~ 212 (475)
+++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 14455566666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 011902 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 213 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 292 (475)
|++++|.++|+++.+.+. .+..++..++.+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.+
T Consensus 319 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH---PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHhccHHHHHH
Confidence 666666666666665442 255556666666666666666666666665532 4567777888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011902 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 372 (475)
+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 888877653 33567788888888888888888888888877653 256778888888888888888888888887653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011902 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 373 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 448 (475)
+.+..+|..+...|.+.|++++|.++|+++.+. +..|.....+|..++.+|.+.|++++|.++++++.+.+ +.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 550 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA 550 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh
Confidence 336778888888888888888888888888775 44442116788888888888888888888888888776 5677
Q ss_pred hhHHHHHHHHHhcCCHhHHhhccc
Q 011902 449 PYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.++..+..+|.+.|++++|.+.++
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888888888888888888877654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-32 Score=273.34 Aligned_cols=368 Identities=9% Similarity=-0.061 Sum_probs=313.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011902 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 171 (475)
++...|+.++..+.+.|+++.|..+++.+... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56788999999999999999999999999854 678899999999999999999999999998653 57899999999
Q ss_pred HHHHhcCChhhHHHHHHHhccC---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------
Q 011902 172 RLFCEKGDMIAADELMKGMGLI---------------DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC------ 230 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------ 230 (475)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999954322 2234688999999999999999999999999876432
Q ss_pred ----------------------------------------------------------------CcCHHHHHHHHHHHHh
Q 011902 231 ----------------------------------------------------------------AANLVAYSALLDGICR 246 (475)
Q Consensus 231 ----------------------------------------------------------------~~~~~~~~~ll~~~~~ 246 (475)
+++..+++.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 1566777778888888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011902 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++++++.+.. +.+..++..+...|.+.|++++|.
T Consensus 318 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 888888888888887653 3466778888888888888888888888887553 457888899999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..+..+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999987543 257789999999999999999999999998764 3467889999999999999999999999999875
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCCHhHHhhccc
Q 011902 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIWLQ--GPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 407 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|.++.+
T Consensus 472 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 472 ---QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 237788999999999999999999999999886 65676 6789999999999999999987764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1e-31 Score=258.94 Aligned_cols=206 Identities=16% Similarity=0.173 Sum_probs=140.4
Q ss_pred HHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC---------H
Q 011902 146 NEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR---------L 215 (475)
Q Consensus 146 ~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~ 215 (475)
..+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..|||.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445555666666554443 34677777777777777777777777777777777777777777776543 5
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011902 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~--~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA--FGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777777 3457777777777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011902 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
+|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777777777777664
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.3e-32 Score=260.40 Aligned_cols=205 Identities=12% Similarity=0.133 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC---------
Q 011902 217 DACGLFKVMKRHGCAANL-VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM--------- 286 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------- 286 (475)
.+..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+. |++||..+||.+|.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN--GVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 344455555555554333 24566666666667777777777666663 356666667666666665443
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011902 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 366 (475)
.++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011902 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 367 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 425 (475)
|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..| +..||+.++..|+.
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p--s~~T~~~l~~~F~s 222 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV--SKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB--CHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666655 56666666666654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.1e-26 Score=215.73 Aligned_cols=377 Identities=14% Similarity=0.032 Sum_probs=321.6
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 011902 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 150 (475)
.++.+.|.+.+....... +.+...+..+...+...++++.|...++...+.. +.+..+|..+...+.+.|++++|+.
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 577788888776655433 2345666667778888999999999999888765 7788999999999999999999999
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011902 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 230 (475)
.|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+..
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 999998754 3456689999999999999999999999998754 3445667788889999999999999999999874
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011902 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+.+..+|..+...+.+.|++++|...|+++.+.. +.+...|..+...+...|++++|...+++..... +.+..++.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 3367899999999999999999999999999854 4567788999999999999999999999988763 33578889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011902 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 390 (475)
.+...+.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987643 46789999999999999999999999998763 457889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011902 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++++.. |.....+..+...+.+.|+
T Consensus 320 ~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999998864 2467899999999999999999999999999876 5667778888887777663
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.5e-26 Score=217.16 Aligned_cols=358 Identities=13% Similarity=0.024 Sum_probs=311.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh
Q 011902 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 180 (475)
...+...|+++.|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+...|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 345567799999999999988764 5566777777788999999999999999887754 46788999999999999999
Q ss_pred hhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011902 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
++|.+.|+++.... +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998754 4456689999999999999999999999999874 235567788889999999999999999999
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011902 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340 (475)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 340 (475)
.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++....... +
T Consensus 162 l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 162 IETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 8853 4567889999999999999999999999998864 335778889999999999999999999999876533 5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011902 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (475)
..++..+...|...|++++|.+.|+++.+.+ +.+..++..+...+.+.|++++|.+.++++.+.. +.+..+|..+.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~ 312 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLA 312 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHH
Confidence 7789999999999999999999999999863 2356789999999999999999999999999875 34788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011902 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+.+.|++++|.+.++++++.. +.+...+..+...+.+.|++++|.+..+
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999875 6678889999999999999999987764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.1e-22 Score=194.04 Aligned_cols=366 Identities=11% Similarity=0.007 Sum_probs=294.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011902 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 171 (475)
.+...+..+...+...|+++.|.++++.+.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345667777888889999999999999998764 6678999999999999999999999999998765 34678899999
Q ss_pred HHHHhcCChhhHHHHHHHhccCCCCCCh---hhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 011902 172 RLFCEKGDMIAADELMKGMGLIDLYPDI---ITYVSM------------IKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 236 (475)
.+|.+.|++++|.+.|+++.... +.+. ..+..+ ...+...|++++|...|+++.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 99999999999999999998754 2333 555555 344889999999999999999864 447889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----
Q 011902 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL---- 312 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l---- 312 (475)
+..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|...|+++.... +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 9999999999999999999999998753 4678899999999999999999999999998753 2234444444
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011902 313 --------IKGFCVEGNLDEAYQLIDKVVAGGSVSS---GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 313 --------i~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 381 (475)
...+.+.|++++|...|+++.+...... ...|..+...+.+.|++++|.+.++++.+.. +.+...+..
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 7889999999999999999988543211 3478889999999999999999999998752 336789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH------------HHhcC-----CHHHHHHHHHHH-HHcC
Q 011902 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG------------LCRKN-----HSVEAAKLARFM-LKKR 443 (475)
Q Consensus 382 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m-~~~~ 443 (475)
+..+|...|++++|...++++.+.. | .+..++..+..+ |...| +.+++.+.++++ ++..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN--E-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS--S-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--c-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999864 2 356677766633 33334 667788888874 3332
Q ss_pred C--CCC-------hhhHHHHHHHHHhcCCHhHHhh
Q 011902 444 I--WLQ-------GPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 444 ~--~~~-------~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
. .++ ...+..+..+|...|+.+...+
T Consensus 412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 1 122 2377888899999998877543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.5e-22 Score=195.20 Aligned_cols=318 Identities=12% Similarity=0.067 Sum_probs=269.8
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHH
Q 011902 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 126 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 205 (475)
+.+...+..+...+.+.|++++|+.+|+.+.+.. +.+...|..+..++...|++++|.+.|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 5678889999999999999999999999998753 4578899999999999999999999999998765 5568889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCCc
Q 011902 206 IKGFCNAGRLEDACGLFKVMKRHGCAANL---VAYSAL------------LDGICRLGSMERALELLGEMEKEGGDCSPN 270 (475)
Q Consensus 206 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (475)
..++.+.|++++|.+.|+++.+... .+. ..+..+ ...+.+.|++++|...|+++.+.. +.+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~ 176 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWD 176 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC
Confidence 9999999999999999999998642 233 555555 444889999999999999998853 467
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH---
Q 011902 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL--- 347 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 347 (475)
..++..+..+|.+.|++++|..+|+++.+.. +.+..++..+..+|...|++++|...|+++...... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 8889999999999999999999999998763 446889999999999999999999999999875433 34444444
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 011902 348 ---------VVELVRTKRLKEAEKLFSKMLASGVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413 (475)
Q Consensus 348 ---------i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 413 (475)
...+...|++++|.+.|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+.
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---p~~~ 329 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME---PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccH
Confidence 78899999999999999999875 455 4578888899999999999999999999864 2377
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011902 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
.+|..+..+|...|++++|.+.++++++.. +-+...+..+..+
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 899999999999999999999999999876 4556666666644
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.4e-22 Score=197.01 Aligned_cols=359 Identities=12% Similarity=-0.060 Sum_probs=219.8
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011902 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 149 (475)
..++...|...|....... |+...|..+...+...|+++.|.+.++.+.+.+ +.+..++..+..++.+.|++++|.
T Consensus 18 ~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4678888888888876654 467788888888888888888888888887765 556778888888888888888888
Q ss_pred HHHHhcccCCCCCCHhh---------------------------------------------------------------
Q 011902 150 WVLRKMPEFDLRPDTII--------------------------------------------------------------- 166 (475)
Q Consensus 150 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------- 166 (475)
..|+++.+.+. ++...
T Consensus 94 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 94 FDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 88888866542 12111
Q ss_pred ----------------HHHHHHHHHh---cCChhhHHHHHHHhcc-----CCC--------CCChhhHHHHHHHHHhcCC
Q 011902 167 ----------------YNNVIRLFCE---KGDMIAADELMKGMGL-----IDL--------YPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 167 ----------------~~~li~~~~~---~g~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~li~~~~~~g~ 214 (475)
+......+.. .|++++|.+.|+++.. ..- +.+..++..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 1222222222 5666666666666654 210 1123445555666666666
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011902 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++|...++++.+.. |+...+..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|...+
T Consensus 253 ~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 253 PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 666666666666553 225556666666666666666666666666532 234555666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C
Q 011902 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-K 373 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~ 373 (475)
++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.++++.+... .
T Consensus 328 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 6665543 224455556666666666666666666666554322 344556666666666666666666666654210 1
Q ss_pred CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 374 PD----GLACSVMIRELCL---GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 374 p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 11 2255556666666 666666666666666643 1245556666666666666666666666666654
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.1e-21 Score=190.30 Aligned_cols=366 Identities=11% Similarity=-0.086 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH
Q 011902 95 FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174 (475)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 174 (475)
..+......+...|+++.|...++.+.+.. |+...|..+..++.+.|++++|+..++.+.+.+ +.+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345566677888999999999999999876 689999999999999999999999999998765 35678999999999
Q ss_pred HhcCChhhHHHHHHHhccCCC-----------------------------------------------------------
Q 011902 175 CEKGDMIAADELMKGMGLIDL----------------------------------------------------------- 195 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~~----------------------------------------------------------- 195 (475)
.+.|++++|.+.|+++...+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999998865431
Q ss_pred -------------------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CcCHHHHHHH
Q 011902 196 -------------------YPDIITYVSMIKGFCN---AGRLEDACGLFKVMKR-----HGC--------AANLVAYSAL 240 (475)
Q Consensus 196 -------------------~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~l 240 (475)
+.+...+......+.. .|++++|...|+++.+ ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1114455555555554 8999999999999988 311 2345678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011902 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 320 (475)
...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999853 447888899999999999999999999998764 346778899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011902 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 400 (475)
++++|...+++..+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987644 56778889999999999999999999998753 2346788888999999999999999999
Q ss_pred HHHHcCCCCCCc----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011902 401 DIEKIGFLSSVD----SDIHSVLLLGLCR---KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 401 ~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
++.+..... ++ ..+|..+...+.. .|++++|.+.+++++... +.+...+..+...+.+.|+++.|.+.++
T Consensus 397 ~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 397 LAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998753211 11 3489999999999 999999999999999887 6678889999999999999999987764
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=4.2e-20 Score=182.13 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=65.3
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011902 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 149 (475)
..++.+.|...|....... +.+...+..+...+...|+++.|.+.++.+.+.. +.+..++..+..++...|++++|.
T Consensus 37 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 4677888888888776543 3467788888888888899999999998888765 557788888888888899999999
Q ss_pred HHHHhc
Q 011902 150 WVLRKM 155 (475)
Q Consensus 150 ~~~~~~ 155 (475)
..|+.+
T Consensus 114 ~~~~~~ 119 (537)
T 3fp2_A 114 FDLSVL 119 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988744
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.4e-19 Score=168.47 Aligned_cols=318 Identities=11% Similarity=0.051 Sum_probs=196.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011902 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
.+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 34444444455555555555555544432 1234445555555555555555555555544332 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--cCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 011902 211 NAGRLEDACGLFKVMKRHGCA--ANLVAYSAL------------LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276 (475)
Q Consensus 211 ~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 276 (475)
..|++++|...+++..+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 159 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDAELREL 159 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCchHHHHH
Confidence 555555555555555443210 122222222 456666777777777777776642 345566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----------
Q 011902 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS----------- 345 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------- 345 (475)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.... +...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 7777777777777777777766543 335566667777777777777777777777654322 122222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011902 346 -SLVVELVRTKRLKEAEKLFSKMLASGVKPD-G----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 346 -~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
.+...+.+.|++++|.+.++++.+.. |+ . ..+..+...+...|++++|...++++.+.. +.+..+|..+
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ 312 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME---PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccHHHHHHH
Confidence 23566888999999999999888753 33 2 224456678888999999999999998864 2367888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011902 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 420 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
...+...|++++|.+.++++++.. +.+......+..+....
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Confidence 999999999999999999998876 55566666666665543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.1e-18 Score=160.46 Aligned_cols=318 Identities=10% Similarity=-0.005 Sum_probs=260.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011902 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 173 (475)
...+..+...+...|+++.|.+.++.+.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4556677788888999999999999998865 5678889999999999999999999999988754 3467889999999
Q ss_pred HHhcCChhhHHHHHHHhccCCCC---CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011902 174 FCEKGDMIAADELMKGMGLIDLY---PDIITYVSM------------IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...|++++|.+.++++.+.. + .+...+..+ ...+...|++++|...++++.+.. +.+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999998754 2 244445444 578889999999999999998875 34788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--------
Q 011902 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS-------- 310 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------- 310 (475)
.+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999853 5678889999999999999999999999988763 22333332
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011902 311 ----TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG----GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 311 ----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 2356688999999999999999886533 22 335567889999999999999999998752 3367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011902 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 383 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 424 (475)
...+...|++++|...++++.+.. | .+...+..+..+..
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHN--E-NDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--T-TCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--C-CChHHHHHHHHHHH
Confidence 999999999999999999999875 2 35666666655543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.8e-18 Score=170.42 Aligned_cols=254 Identities=10% Similarity=-0.049 Sum_probs=154.0
Q ss_pred ChhhHHHHHHHhccCCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChH
Q 011902 179 DMIAADELMKGMGLIDLYPD-------IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
++++|.++++++.+.. +.+ ..++..+...+...|++++|...+++..+. .|+...+..+...|...|+++
T Consensus 217 ~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence 5666666666665433 112 123445555666667777777777776665 344666666666777777777
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011902 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 331 (475)
+|.+.++++.+.. +.+..+|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++
T Consensus 294 ~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 294 EFFKFFQKAVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777766642 3445666666667777777777777777666543 22345666666677777777777777777
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHH
Q 011902 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG-----VKPDGLACSVMIRELCLG----------GQVLEGF 396 (475)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~----------g~~~~a~ 396 (475)
+.+.... +...+..+...+...|++++|.+.|+++.+.. .......+..+...+... |++++|.
T Consensus 370 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 370 TKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp HHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred HHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 6665422 34556666667777777777777776665421 001111122333445555 6777777
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..++++.+.. +.+..++..+...|.+.|++++|.+.|+++++..
T Consensus 449 ~~~~~a~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 449 KLLTKACELD---PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7777776653 2255666677777777777777777777776654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=4.7e-19 Score=162.99 Aligned_cols=295 Identities=12% Similarity=-0.044 Sum_probs=221.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 011902 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240 (475)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 240 (475)
+.+...+..+...+...|++++|.++|+++.... +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3456667777777888888888888888877654 4455666777777888888888888888887754 3356777778
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011902 241 LDGICRLG-SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 241 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
...+...| ++++|.+.++++.+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 88888888 8888888888887743 3456677888888888888888888888887653 22455666677888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCC
Q 011902 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG--------VKPDGLACSVMIRELCLGGQ 391 (475)
Q Consensus 320 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~ll~~~~~~g~ 391 (475)
|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. .......+..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 8888888888888776533 56778888888888888888888888877531 12234677888888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCCHhH
Q 011902 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL-KKSGDEEL 466 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 466 (475)
+++|...++++.+.. +.+..+|..+...+.+.|++++|.+.++++++.. +.+...+..+..++ ...|+.+.
T Consensus 252 ~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 252 YAEALDYHRQALVLI---PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchhc
Confidence 999999999888865 2366788888889999999999999999888766 56677777777777 45565543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=7.9e-19 Score=164.23 Aligned_cols=265 Identities=14% Similarity=0.027 Sum_probs=176.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011902 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 200 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
..+..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.++++.+.. +.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~l~~ 140 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK---PDNQTALMALAV 140 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC---CCCHHHHHHHHH
Confidence 345555555555555555555555555543 2244555555555555566666665555555532 234555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHhCCCCC-Chhh
Q 011902 280 IFCGKGMMKEALGILDRMEALGCAPNRVTIST---------------LIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGC 343 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---------------li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~ 343 (475)
.+...|++++|...++++...... +...+.. .+..+...|++++|...++++.+..... +..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 555556666666665555543211 1111110 2333347788888888888887765332 4677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011902 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 423 (475)
+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ---PGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHH
Confidence 8888888888899999999888887652 3346788888888888999999999999888864 23677888888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011902 424 CRKNHSVEAAKLARFMLKKRIWL----------QGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.+.|++++|.+.++++++..... ....+..+..++...|+.+.|..+.+.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999999998888754111 267888889999999999988877654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.9e-18 Score=158.94 Aligned_cols=294 Identities=9% Similarity=-0.083 Sum_probs=224.3
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHH
Q 011902 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 126 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 205 (475)
+.+...+..+...+...|++++|.++|+.+.+.. +.+...+..++..+...|++++|..+++++.... +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4456667777778888888888888888887654 3455667777788888888888888888887654 4567778888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011902 206 IKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 206 i~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
...+...| ++++|...|++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHH
Confidence 88888888 8888888888888764 3356778888888888899999998888888753 34456677788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCC
Q 011902 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--------SVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 356 (475)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. ......++..+...|...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 89999998888887763 3456778888888888899999998888887632 12234678888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH-HhcCCHH
Q 011902 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL-CRKNHSV 430 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 430 (475)
+++|.+.+++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR---RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC---SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC---CCchHHHHHHHHHHHHHhCchh
Confidence 999999999888653 2345778888888888999999999998888754 23677777787777 3455543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=1.3e-15 Score=148.15 Aligned_cols=338 Identities=13% Similarity=0.000 Sum_probs=256.1
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHh----c
Q 011902 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI----KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----A 142 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~ 142 (475)
..+...|...|...... .+...+..+...+.. .++.+.|.+.++...+.| +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 57778888888777654 245566667677766 788888888888887765 55666667777777 6
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCC
Q 011902 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE----KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN----AGR 214 (475)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~ 214 (475)
+++++|+..|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 78888888888887754 56677777777776 778888888888887654 56777777777777 788
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCC
Q 011902 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGM 286 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 286 (475)
.++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .++
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-----NSIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHCCCCCCCC
Confidence 888888888888765 56677777777776 778888888888887742 45566666667776 788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHH
Q 011902 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVE-----GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK---RLK 358 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~ 358 (475)
.++|+..|++..+.| +...+..+...|... +++++|...+++..+.+ +...+..+...|...| +.+
T Consensus 275 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 275 PLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 888888888887664 455666777777776 78888888888888765 3456677777777656 778
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHH
Q 011902 359 EAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSV 430 (475)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 430 (475)
+|.+.|++..+.| +...+..|-..|.. .+++++|...|++..+.+ +...+..+...|.+ .++++
T Consensus 349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-----LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 8888888888763 55667777777777 688888888888888865 45677778888877 78888
Q ss_pred HHHHHHHHHHHcC
Q 011902 431 EAAKLARFMLKKR 443 (475)
Q Consensus 431 ~A~~~~~~m~~~~ 443 (475)
+|.++|++..+.+
T Consensus 421 ~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 421 QAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 8888888888876
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=3.6e-18 Score=159.75 Aligned_cols=293 Identities=13% Similarity=-0.014 Sum_probs=230.9
Q ss_pred hcCCHHHHHH-HHHhcccCCC---CCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011902 141 KARLANEAMW-VLRKMPEFDL---RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 141 ~~~~~~~A~~-~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 216 (475)
-.|++++|.+ .|++...... ..+...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3578899998 8887665421 1145678889999999999999999999998765 567788999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH---------------HHHHH
Q 011902 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS---------------VIQIF 281 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------------li~~~ 281 (475)
+|...|+++.+.. +.+..++..+...|...|++++|.+.++++.... +.+...+.. .+..+
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT---PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999998875 3478899999999999999999999999998853 222222221 23444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011902 282 CGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 360 (475)
...|++++|...++++.+..... +..++..+...+...|++++|...++++.+.... +..++..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998764221 5788999999999999999999999999876532 567899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------CCchhhHHHHHHHHHhcCCHHHH
Q 011902 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS--------SVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A 432 (475)
.+.|+++.+.. +.+...+..+...+...|++++|...++++.+..... +....+|..+..++...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998753 3457888999999999999999999999998753210 11268899999999999999999
Q ss_pred HHHHHHHH
Q 011902 433 AKLARFML 440 (475)
Q Consensus 433 ~~~~~~m~ 440 (475)
..++++.+
T Consensus 350 ~~~~~~~l 357 (368)
T 1fch_A 350 GAADARDL 357 (368)
T ss_dssp HHHHTTCH
T ss_pred HHhHHHHH
Confidence 99876443
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=2.6e-18 Score=160.70 Aligned_cols=265 Identities=12% Similarity=-0.019 Sum_probs=189.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 011902 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277 (475)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 277 (475)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 34456677777777777777777777777654 3356677777777777777777777777777642 3456677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHH
Q 011902 278 IQIFCGKGMMKEALGILDRMEALGCAPN-----------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYS 345 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~ 345 (475)
..+|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+..... +..++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 777777777777777777776542 21 2223345677888888888888888888765331 567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011902 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 425 (475)
.+...|...|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...++++.+.. +.+..+|..+..+|.+
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence 88888888899999999998888653 3357788888888889999999999999888864 2367888888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCCHhHHhhccc
Q 011902 426 KNHSVEAAKLARFMLKKRIW-----------LQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.|++++|.+.++++++.... .+...+..+..++...|+.+.+.++.+
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999888865311 136778888889999999888877654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=5.7e-18 Score=158.31 Aligned_cols=269 Identities=12% Similarity=-0.018 Sum_probs=217.9
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011902 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
.+...+..+...+.+.|++++|.+.|+++.... +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668889999999999999999999998765 5678889999999999999999999999998864 34688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCc-H----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 011902 242 DGICRLGSMERALELLGEMEKEGGDCSPN-V----------VTYTSVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTI 309 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~ 309 (475)
..|...|++++|...++++.+.. |+ . ..+..+...+...|++++|...++++.+.... ++..++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN----PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC----ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 99999999999999999998742 32 2 22334577889999999999999999886422 157889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011902 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 389 (475)
..+...+...|++++|...+++..+.... +..+|..+..+|...|++++|.+.|+++.+.. +.+...+..+...|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 99999999999999999999999886533 57789999999999999999999999998753 23478899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC---------CCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011902 390 GQVLEGFCLYEDIEKIGFL---------SSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (475)
|++++|...++++.+.... +..+..+|..+..++...|+.+.+.++..+
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999875311 011367899999999999999998887654
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=6e-15 Score=143.51 Aligned_cols=346 Identities=12% Similarity=-0.029 Sum_probs=277.4
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHh----cCCHHHHHHHHHhcccCCCCCCH
Q 011902 93 SSFMYNRACEMSRI----KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----ARLANEAMWVLRKMPEFDLRPDT 164 (475)
Q Consensus 93 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 164 (475)
+...+..+...+.. .++++.|.+.++...+.| +...+..+-..|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444455555555 788999999999888765 56677778888888 889999999999988754 66
Q ss_pred hhHHHHHHHHHh----cCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHH
Q 011902 165 IIYNNVIRLFCE----KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN----AGRLEDACGLFKVMKRHGCAANLVA 236 (475)
Q Consensus 165 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~ 236 (475)
..+..|...|.. .+++++|.+.|++....| +...+..+...|.. .++.++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 777778888887 789999999999988765 56777778888876 788999999999988875 6778
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011902 237 YSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 237 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..+...|.. .++.++|.+.|++..+. .+...+..+...|.. .+++++|..+|++..+.| +...
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 8888888887 88999999999998884 356677777777776 789999999999988765 4556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHH
Q 011902 309 ISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT-----KRLKEAEKLFSKMLASGVKPDGLAC 379 (475)
Q Consensus 309 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~ 379 (475)
+..+-..|.. .++.++|...|+...+.+ +...+..+...|... +++++|.+.|++..+.| +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 6677777777 889999999999988765 445677788888877 89999999999988765 34566
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011902 380 SVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 380 ~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
..+-..|...| +.++|.+.+++..+.+ +...+..+...|.. .+++++|.+++++..+.+ ++..+.
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~ 403 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQV 403 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHH
Confidence 66766776656 7889999999999875 56788888888888 889999999999998876 467778
Q ss_pred HHHHHHHh----cCCHhHHhhccc
Q 011902 453 KIVEHLKK----SGDEELITNLPK 472 (475)
Q Consensus 453 ~l~~~~~~----~g~~~~a~~l~~ 472 (475)
.+...|.+ .++.++|.+..+
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHH
Confidence 88888888 789988877654
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=3e-15 Score=147.17 Aligned_cols=403 Identities=10% Similarity=-0.001 Sum_probs=285.4
Q ss_pred CHHHHHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011902 58 DSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 137 (475)
+...+...+..+..++.+.|..+|..+... ++.+...|...+....+.|+++.|..+++.+.... |++..|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 344444444433467888899998887653 45678888899999999999999999999988764 58888877775
Q ss_pred H-HHhcCCHHHHHH----HHHhccc-CCCC-CCHhhHHHHHHHHHh---------cCChhhHHHHHHHhccCCCCCChhh
Q 011902 138 L-CEKARLANEAMW----VLRKMPE-FDLR-PDTIIYNNVIRLFCE---------KGDMIAADELMKGMGLIDLYPDIIT 201 (475)
Q Consensus 138 ~-~~~~~~~~~A~~----~~~~~~~-~~~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~ 201 (475)
. ....|+.++|.+ +|+...+ .|.. ++...|...+....+ .|+++.|.++|++............
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 3 345577766655 7776654 2433 356678777776654 6889999999999987311111233
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCcC--------HHHHHHHHHHHHhc----
Q 011902 202 YVSMIKGF-------------CNAGRLEDACGLFKVMK------RHG---CAAN--------LVAYSALLDGICRL---- 247 (475)
Q Consensus 202 ~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~ll~~~~~~---- 247 (475)
|....... .+.++++.|..+++++. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43322211 13455677777776632 211 2443 24555555433322
Q ss_pred CCh----HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHH
Q 011902 248 GSM----ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-------KGMMK-------EALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 248 g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~ 309 (475)
++. +.+..+|+++.... +.+...|......+.+ .|+++ +|..++++..+.-.+.+...+
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 47788999888742 4567888888888775 78987 899999998863234467888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH-HHH
Q 011902 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIR-ELC 387 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~-~~~ 387 (475)
..++..+.+.|++++|..+|+.+.+.........|..++..+.+.|++++|.++|++..+. .|+ ...+..... .+.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHH
Confidence 8999999999999999999999998543211357888888889999999999999999875 333 222322221 234
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC--ChhhHHHHHHHHHhcCCH
Q 011902 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WL--QGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~--~~~~~~~l~~~~~~~g~~ 464 (475)
..|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++++..+. .| ....|...+....+.|+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HcCChhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 6899999999999998864 23678999999999999999999999999998752 22 234788888888999999
Q ss_pred hHHhhccc
Q 011902 465 ELITNLPK 472 (475)
Q Consensus 465 ~~a~~l~~ 472 (475)
+.+..+.+
T Consensus 480 ~~~~~~~~ 487 (530)
T 2ooe_A 480 ASILKVEK 487 (530)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=1.2e-16 Score=146.55 Aligned_cols=277 Identities=10% Similarity=-0.057 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011902 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..+..+...+...|++++|.++|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 344455555556666666666666555433 3344555555555556666666666666555542 22455555555555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhcCCH
Q 011902 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL-IK-GFCVEGNL 322 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~-~~~~~g~~ 322 (475)
...|++++|.+.++++.+.. +.+...+..+... .|+......+ .. .+...|++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ---PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS---TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC---CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 55666666666665555532 1111122111000 0000000111 11 25566677
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 402 (475)
++|...++++.+.... +...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777665432 45667777777777777777777777776542 234566777777777777777777777777
Q ss_pred HHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCCHhHHhhcc
Q 011902 403 EKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL-----------QGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.+.. +.+..++..+...+.+.|++++|.+.++++++..... +...+..+..++.+.|+.+.|..+.
T Consensus 233 ~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 233 LDIN---PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHcC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7654 2356677777777777778888877777777654221 4566777777777888877777665
Q ss_pred cc
Q 011902 472 KI 473 (475)
Q Consensus 472 ~~ 473 (475)
+.
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=8.5e-17 Score=147.62 Aligned_cols=283 Identities=11% Similarity=-0.048 Sum_probs=187.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHH
Q 011902 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 207 (475)
+...+......+...|++++|..+|+++.+.. +.+...+..+..++...|++++|.+.++++.... +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45567777889999999999999999998754 3477889999999999999999999999998764 557888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH--HHHhcC
Q 011902 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ--IFCGKG 285 (475)
Q Consensus 208 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g 285 (475)
.+...|++++|.+.++++.+.... +...+..+... .|+......+.. .+...|
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------------CCTTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHcc
Confidence 999999999999999999886422 22222222000 011111111111 144445
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011902 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 365 (475)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|.+.++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555666555555442 22445555556666666666666666666655432 234556667777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------CCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011902 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS---------SVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (475)
++.+.. +.+...+..+...+...|++++|.+.++++.+..... ..+..+|..+..++.+.|++++|.+++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 766542 2345666777777777777877777777777653210 004567788888888888888888877
Q ss_pred HHHH
Q 011902 437 RFML 440 (475)
Q Consensus 437 ~~m~ 440 (475)
++.+
T Consensus 310 ~~~l 313 (327)
T 3cv0_A 310 AQNV 313 (327)
T ss_dssp TCCS
T ss_pred HHHH
Confidence 6543
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=9.1e-18 Score=154.66 Aligned_cols=283 Identities=10% Similarity=-0.031 Sum_probs=81.9
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 011902 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 186 (475)
.++.+.|.+.++.+ +++.+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|.++
T Consensus 16 ~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34455555555554 12235555555555566666665555432 3444555555555555666665555
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 011902 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266 (475)
Q Consensus 187 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (475)
++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 5444432 2334555555556666666555555553 244455555556666666666666555543
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011902 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346 (475)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (475)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 13555555566666666665555555 1455555555566666666555333322 1122222334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----CchhhHHHHHH
Q 011902 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-----VDSDIHSVLLL 421 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~l~~ 421 (475)
++..|.+.|++++|..+++..+... +-....|+-|-.+|++- ++++..+.++.....--.|+ .+...|..++.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 5555555566666655555555322 22334444444444332 22222222222222111111 13445555555
Q ss_pred HHHhcCCHHHHHH
Q 011902 422 GLCRKNHSVEAAK 434 (475)
Q Consensus 422 ~~~~~g~~~~A~~ 434 (475)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 5555555555544
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=5.2e-16 Score=139.62 Aligned_cols=252 Identities=9% Similarity=-0.009 Sum_probs=125.0
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011902 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 217 (475)
.....|+++.|+..++................+.++|...|+++.|+..++.. -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 33445666666666655543221111223344555666666666665544331 13445555555556666666666
Q ss_pred HHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011902 218 ACGLFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 218 a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
|.+.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.+++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666665554323 344444455556666666666665554 13445555555566666666666666666
Q ss_pred HHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011902 297 MEALGCAPNRVTI---STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 297 m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 373 (475)
+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.+++..+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 55542 332111 111222223355555555555555442 2244455555555555555555555555554431 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 011902 374 PDGLACSVMIRELCLGGQVLE-GFCLYEDIEKI 405 (475)
Q Consensus 374 p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~ 405 (475)
-+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 234445555555555555433 34455555544
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=8.6e-16 Score=138.22 Aligned_cols=251 Identities=11% Similarity=0.021 Sum_probs=132.6
Q ss_pred HHhcCChhhHHHHHHHhccCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChH
Q 011902 174 FCEKGDMIAADELMKGMGLIDLYPDI--ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
....|+++.|+..++...... |+. .....+.++|...|+++.|...++. .-+|+..++..+...+...|+.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 344566666666665544321 222 2334445566666666666554433 12345555556666666666666
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011902 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 331 (475)
+|++.++++...+. .+.+...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++.
T Consensus 83 ~A~~~l~~ll~~~~-~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 83 AIVAELDREMSRSV-DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHSCC-CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666554210 122344444455566666666666666654 23455555566666666666666666666
Q ss_pred HHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011902 332 VVAGGSVSSGGCY---SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 332 ~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (475)
+.+.+ |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-- 230 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-- 230 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 65543 221101 112222333456666666666665541 3345555556666666666666666666666543
Q ss_pred CCCchhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 011902 409 SSVDSDIHSVLLLGLCRKNHSVE-AAKLARFMLKKR 443 (475)
Q Consensus 409 ~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 443 (475)
+.+..++..++..+...|+.++ +.++++++++..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 2355556666666666666544 345666665554
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=9.4e-19 Score=173.75 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=112.9
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011902 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEG-GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
--..||+++|++||+.|++++|.++|++|.+.+ .|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345688888888888888888888888776421 2467888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 011902 311 TLIKGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD------GLACSVMI 383 (475)
Q Consensus 311 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll 383 (475)
++|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.+..+. .+++..+++ ..+..|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 88888888887 467888888888888888888888887655443 334444444 2344443 34444555
Q ss_pred HHHHhcC
Q 011902 384 RELCLGG 390 (475)
Q Consensus 384 ~~~~~~g 390 (475)
..|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=172.61 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=104.3
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHhcc---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011902 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGL---IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
.-..+||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3455788888888888888888888876643 4677888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHH
Q 011902 239 ALLDGICRLGSM-ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN------RVTIST 311 (475)
Q Consensus 239 ~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ 311 (475)
++|.++++.|+. ++|.++|++|.+. |+.||..+|+.++.++.+. .+++..+++ ..+..|+ ..+...
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k--G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE--GLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH--TCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc--CCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHH
Confidence 888888887764 6777888888774 4678888888777655442 333333333 2233333 344455
Q ss_pred HHHHHHhcC
Q 011902 312 LIKGFCVEG 320 (475)
Q Consensus 312 li~~~~~~g 320 (475)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 555555544
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2.3e-14 Score=140.86 Aligned_cols=371 Identities=11% Similarity=-0.001 Sum_probs=269.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011902 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 171 (475)
.+...|..++.. ...++++.|..+++.+.+.. |-+...|...+..+.+.|++++|..+|+++.... |+...|...+
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 467778888874 66899999999999998864 6688899999999999999999999999998864 6887887777
Q ss_pred HHH-HhcCChhhHHH----HHHHhcc-CCCC-CChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCcCHH
Q 011902 172 RLF-CEKGDMIAADE----LMKGMGL-IDLY-PDIITYVSMIKGFCN---------AGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 172 ~~~-~~~g~~~~a~~----~~~~m~~-~~~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
... ...|+.+.|.+ +|+.... .|.. ++...|...+....+ .|+++.|..+|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 35677777765 6666543 2433 356677777776654 688999999999998842111123
Q ss_pred HHHHHHHHH-------------HhcCChHHHHHHHHHHH------hcCC-CCCCc--------HHHHHHHHHHHHhc---
Q 011902 236 AYSALLDGI-------------CRLGSMERALELLGEME------KEGG-DCSPN--------VVTYTSVIQIFCGK--- 284 (475)
Q Consensus 236 ~~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~~~-~~~~~--------~~~~~~li~~~~~~--- 284 (475)
.|....... .+.++++.|..++..+. +... .++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 443322211 13456777877776632 2111 12343 24555555433322
Q ss_pred -CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCChhhHH
Q 011902 285 -GMM----KEALGILDRMEALGCAPNRVTISTLIKGFCV-------EGNLD-------EAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 285 -g~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
++. +++..+|++..... +-+...|..+...+.+ .|+++ +|..++++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 47788898888752 3467778888777775 69987 8999999998632233578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH-
Q 011902 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPD--GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG- 422 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~- 422 (475)
.++..+.+.|++++|.++|+++++. .|+ ...|..++..+.+.|++++|.++|++..+.. +.+...|......
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~---~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TCCTHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---CCchHHHHHHHHHH
Confidence 9999999999999999999999975 554 2578888888889999999999999999853 2233334333222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011902 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
+...|++++|.++|++.++.. +.++..+..++..+.+.|+.+.|..+.+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 346899999999999999876 56788999999999999999999877643
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=2.4e-17 Score=151.90 Aligned_cols=282 Identities=13% Similarity=0.090 Sum_probs=136.4
Q ss_pred hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011902 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 220 (475)
+.|++++|.++++++.. ..+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|.+
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 56779999999999833 34999999999999999999999965 3577899999999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 88877764 4567889999999999999999988773 267779999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011902 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380 (475)
Q Consensus 301 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 380 (475)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 36999999999999999999999998 26788999999999999999996655442 23444456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------ChhhHH
Q 011902 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK--NHSVEAAKLARFMLKKRIWL------QGPYVD 452 (475)
Q Consensus 381 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~ 452 (475)
.++..|.+.|++++|..+++...... +-...+|+-+...|++- ++..+.++.|.. ..++++ +...|.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le---~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 78899999999999999999998754 23788899988888764 345555554431 223333 567899
Q ss_pred HHHHHHHhcCCHhHHhhc
Q 011902 453 KIVEHLKKSGDEELITNL 470 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l 470 (475)
.+.-.|.+.|+++.|...
T Consensus 287 e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHH
Confidence 999999999999987653
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=1.1e-13 Score=142.12 Aligned_cols=273 Identities=16% Similarity=0.103 Sum_probs=195.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 011902 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 135 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 214 (475)
+...+...|++++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 44566677788888888877531 2222233332 567788888887755 246778888888888888
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011902 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++|...|.+. -|...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 88888888553 367788888888888888888888888776632 33333445788888888877544332
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011902 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 374 (475)
+ .++...|..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 345566777888888888888888888885 24888888888888888888888876 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011902 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 375 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+..+|..+-.+|...|++..|......+.. +...+..++..|.+.|.+++|+.+++..+... +-....|..+
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Iiv-------~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-------HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 457788888888888888888776554322 45667788888999999999999998877555 4444555555
Q ss_pred HHHHHhc
Q 011902 455 VEHLKKS 461 (475)
Q Consensus 455 ~~~~~~~ 461 (475)
..++.+.
T Consensus 1321 aiLyaKy 1327 (1630)
T 1xi4_A 1321 AILYSKF 1327 (1630)
T ss_pred HHHHHhC
Confidence 5555544
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=8.5e-14 Score=134.67 Aligned_cols=361 Identities=10% Similarity=-0.035 Sum_probs=236.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccC----
Q 011902 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE--------GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF---- 158 (475)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---- 158 (475)
......|+.+..+....|+.++|++.++...+. ..+-...+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344667888888999999999999998876531 12334578888999999999999999998876541
Q ss_pred -C--CCCCHhhHHHHHHHHHhc--CChhhHHHHHHHhccCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCC
Q 011902 159 -D--LRPDTIIYNNVIRLFCEK--GDMIAADELMKGMGLIDLYPDIITYVSMIKG---FCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 159 -~--~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~ 230 (475)
+ ......++..+..++.+. +++++|.+.|++..... +-+...+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 112345666665555554 57899999999987654 3345555555444 345677788999998888764
Q ss_pred CcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011902 231 AANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
+.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +-+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 3356666666555554 467889999999988753 4667788899999999999999999999988763 2345
Q ss_pred HHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 307 VTISTLIKGFCVE-------------------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 307 ~~~~~li~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
.++..+..+|... +..+.|...++...+.+.. +..++..+...|...|++++|.+.|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 5566555544322 2356777788877765433 4566888999999999999999999999
Q ss_pred HHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011902 368 LASGVKPDGL--ACSVMIR-ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 368 ~~~~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
.+....+... .+..+.. .....|+.++|...+++..+... +.... .+..+.+.++++..+...
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~----~~~~~---------~~~~~~l~~~~~~~l~~~- 426 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ----KSREK---------EKMKDKLQKIAKMRLSKN- 426 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC----CCHHH---------HHHHHHHHHHHHHHHHHC-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc----ccHHH---------HHHHHHHHHHHHHHHHhC-
Confidence 8764333221 1222222 23567899999999998887542 11111 111233344445555444
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011902 445 WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+.++.++..+..++...|+.++|.+..+
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555566666666666666666655543
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=1.8e-12 Score=133.46 Aligned_cols=309 Identities=9% Similarity=-0.037 Sum_probs=166.3
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 011902 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 186 (475)
.+++++|.++.+.. -+..+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.++
T Consensus 1089 i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455554444432 23445555555555555555555555432 2444455555555555555555555
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 011902 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGD 266 (475)
Q Consensus 187 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (475)
+...++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|..+.
T Consensus 1157 L~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~----- 1222 (1630)
T 1xi4_A 1157 LQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----- 1222 (1630)
T ss_pred HHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-----
Confidence 55444332 22222223555555555555322221 1 2234444455555555555555555555431
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011902 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346 (475)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (475)
.|..+..+|++.|++++|.+.+++. -+..+|..+-.+|...|++..|...... +..+...+..
T Consensus 1223 ------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLee 1285 (1630)
T 1xi4_A 1223 ------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 1285 (1630)
T ss_pred ------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHH
Confidence 3555555555555555555555543 1345555555555555555555554432 2234555778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----CchhhHHHHHH
Q 011902 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-----VDSDIHSVLLL 421 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~l~~ 421 (475)
++..|.+.|.+++|+.+++..+... +-....|.-+...+++. ++++..+.++...++.-.|+ .+...|..++.
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHH
Confidence 8888888888888888887776432 22334555555555543 33333333333334333332 25677888888
Q ss_pred HHHhcCCHHHHHHH-------------HHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011902 422 GLCRKNHSVEAAKL-------------ARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 422 ~~~~~g~~~~A~~~-------------~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
.|.+.|+++.|... |++.+. ...++..|...+.-|....
T Consensus 1364 LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 99999999988732 222221 1456677777777777666
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.7e-14 Score=127.31 Aligned_cols=228 Identities=9% Similarity=-0.004 Sum_probs=148.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHH
Q 011902 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYT 275 (475)
Q Consensus 200 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 275 (475)
..+..+...+...|++++|...|++..+.. .+..++..+...|...|++++|.+.++++.+......++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555566666666666666666666554 455666666666666666666666666665532100111 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011902 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
.+...+...|++++|...+++..+.. |+. ..+.+.|++++|...++.+...... +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 66666666677777777766666542 332 2345556677777777777664322 3456777777777888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011902 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 435 (475)
++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+..+|..+...+.+.|++++|.+.
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888777643 2346677777777888888888888888887764 23567778888888888888888888
Q ss_pred HHHHHHcC
Q 011902 436 ARFMLKKR 443 (475)
Q Consensus 436 ~~~m~~~~ 443 (475)
++++++..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88877653
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.4e-14 Score=124.06 Aligned_cols=221 Identities=15% Similarity=0.051 Sum_probs=93.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCC--CCC----hhhHHH
Q 011902 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL--YPD----IITYVS 204 (475)
Q Consensus 131 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~~~ 204 (475)
.+..+...+...|++++|+..|++..+.. .+...|..+..++...|++++|.+.+++...... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444445555555555555544433 3444444455555555555555555544433210 001 234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011902 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
+...+...|++++|...|++..+.. |+. ..+.+.|++++|...++.+.... +.+...+..+...+...
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHHh
Confidence 4444444444444444444444431 221 12333344444444444444421 12233344444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011902 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
|++++|...+++..+.. +.+...+..+..++...|++++|...++...+.... +...|..+...+...|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444444444444332 113333444444444444444444444444333211 2333344444444444444444444
Q ss_pred HHH
Q 011902 365 SKM 367 (475)
Q Consensus 365 ~~m 367 (475)
++.
T Consensus 231 ~~a 233 (258)
T 3uq3_A 231 DAA 233 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=3.9e-14 Score=121.65 Aligned_cols=196 Identities=16% Similarity=0.064 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011902 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3344444444444444444444444444421 2334444444444444444444444444444332 11233444444
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011902 314 KGFCVE-----------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 314 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.++... |++++|...+++..+.... +...+..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 444444 6666666666666654432 34556666666666677777777666666654 455666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 383 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 439 (475)
..++...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666677777777776666653 235566666666666677777776666554
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=3.8e-14 Score=121.74 Aligned_cols=196 Identities=17% Similarity=0.066 Sum_probs=85.1
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011902 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33444444444555555555555555444332 2334444444445555555555555555444432 123444444444
Q ss_pred HHHhc-----------CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011902 243 GICRL-----------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 243 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
.+.+. |++++|+..+++..+.. |.+...+..+..++...|++++|+..|++..+.. .+...+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 44444 55555555555554432 2234444444445555555555555555544443 34444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011902 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 366 (475)
+..++...|++++|...|+...+.... +...+..+...+...|++++|...+++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444455555555555555554443321 233444444444444555555444443
No 40
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=7.7e-13 Score=127.95 Aligned_cols=352 Identities=11% Similarity=-0.062 Sum_probs=236.2
Q ss_pred CCChHHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C---CccCHHhHHHHH
Q 011902 71 PSQSQMGIRFFIWAALQ-------SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE----G---CVVSVKMMKVIF 136 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~ll 136 (475)
.++.+.|++.|.-+... ..-+....+|..+..++...|+++.|...++...+. . ......++....
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 78888898887665321 122345678888999999999999999988876542 1 112345565555
Q ss_pred HHHHh--cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH---HHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011902 137 NLCEK--ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL---FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 137 ~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 211 (475)
.++.. .+++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+..++..+...+..
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHH
Confidence 55554 357999999999988754 2345555555544 445678889999998887654 4456666666555544
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc---
Q 011902 212 ----AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK--- 284 (475)
Q Consensus 212 ----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 284 (475)
.|+.++|.+.+++..... +.+..++..+...|.+.|++++|...+++..+.. +.+..++..+..+|...
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~y~~~~~~ 297 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLHCQIGCCYRAKVFQ 297 (472)
T ss_dssp CC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHHH
Confidence 467789999999988765 4477889999999999999999999999998853 34566666666555322
Q ss_pred ----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHH
Q 011902 285 ----------------GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG--CYSS 346 (475)
Q Consensus 285 ----------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ 346 (475)
+..++|...++...+.. +.+...+..+...+...|++++|...|++..+....+... .+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 23567788887777653 3355677888899999999999999999999876544321 2233
Q ss_pred HHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011902 347 LVV-ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 347 li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 425 (475)
+.. .+...|+.++|+..|.+.++. .|+...... ....+.++++...+.+ +.+..+|..+...|..
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~---p~~~~~~~~LG~~~~~ 442 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN---GADSEALHVLAFLQEL 442 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC---C-CTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 322 234779999999999999865 555332222 2234455666666654 3477899999999999
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 011902 426 KNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~~~~ 443 (475)
.|++++|++.|++.++.+
T Consensus 443 ~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 443 NEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHCC-------------
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 999999999999999876
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.5e-12 Score=115.99 Aligned_cols=223 Identities=11% Similarity=-0.026 Sum_probs=121.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHH
Q 011902 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTY 274 (475)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (475)
..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~ 77 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGC 77 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHH
Confidence 3344444455555555555555555555422 33444445555555 555555555555555521 34445
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011902 275 TSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSS 346 (475)
Q Consensus 275 ~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (475)
..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 555555555 555555555555555543 44455555555555 556666666666555544 3344555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011902 347 LVVELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 347 li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~ 223 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-----NGGGCFN 223 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----CHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-----CHHHHHH
Confidence 5555555 566666666666665543 33445555555555 666666666666666653 2345555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcC
Q 011902 419 LLLGLCR----KNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 419 l~~~~~~----~g~~~~A~~~~~~m~~~~ 443 (475)
+...|.+ .+++++|.+.+++..+.+
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666665 666666666666666655
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=3.2e-13 Score=120.22 Aligned_cols=251 Identities=12% Similarity=0.050 Sum_probs=143.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011902 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
+......+...|++++|...|++..+... .+...+..+...|...|++++|++.++++.+...........|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34444555556666666666666555431 13335555555666666666666666666552111111123355566666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011902 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
...|++++|++.+++..+.. +.+...+..+...|...|++++|...+++..+.... +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665542 224455666666666677777777777666654322 3445555552333345777777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CCC----chhhHHHHHHHHHhcCCHHHH
Q 011902 362 KLFSKMLASGVKPD-GLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFL-SSV----DSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 362 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A 432 (475)
+.|++..+. .|+ ...+..+...+...|+ .++|...++++.+.... |.+ ...+|..+...|.+.|++++|
T Consensus 163 ~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 777777754 233 4555556666666666 66777777777654211 110 125677777888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHH
Q 011902 433 AKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
.+.++++++.. |.+......+....
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHC---
T ss_pred HHHHHHHHhcC-ccHHHHHHHhhhhh
Confidence 88888888776 45555555444433
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=7.7e-13 Score=116.32 Aligned_cols=202 Identities=14% Similarity=0.034 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011902 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 3445555666666666666666666666532 3345566666666666666666666666665543 22455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011902 314 KGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 392 (475)
..+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 66667777777777777666522223 34556666667777777777777777766542 22456666677777777777
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++|...++++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 192 ~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 192 VPARQYYDLFAQGG---GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777777776643 2355666777777777777777777777777664
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=5.7e-13 Score=114.75 Aligned_cols=164 Identities=10% Similarity=0.008 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011902 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 33444444444444444444444443322 2223344444444444444444444444444332 113334444444444
Q ss_pred hc-CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011902 246 RL-GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 246 ~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 324 (475)
.. |++++|...++++.+. ...+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 44 4444444444444431 0011123333444444444444444444444443321 1123333333334444444444
Q ss_pred HHHHHHHHH
Q 011902 325 AYQLIDKVV 333 (475)
Q Consensus 325 a~~~~~~~~ 333 (475)
|...++++.
T Consensus 166 A~~~~~~~~ 174 (225)
T 2vq2_A 166 ADYYFKKYQ 174 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=1.1e-12 Score=115.41 Aligned_cols=202 Identities=10% Similarity=-0.033 Sum_probs=113.8
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011902 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
...|..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455555666666666666666666655433 3345556666666666666666666666665543 2245556666666
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011902 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 323 (475)
|...|++++|.+.++++.+. ...+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666551 0112244555555666666666666666666655542 223455555555556666666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011902 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
+|...++.+.+... .+...+..+...+...|+.++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666665554332 23444555555555556666666666555543
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=4e-13 Score=119.59 Aligned_cols=161 Identities=12% Similarity=0.024 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChh----hHHHHHH
Q 011902 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII----TYVSMIK 207 (475)
Q Consensus 132 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~ 207 (475)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++....+ ++.. .|..+..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHH
Confidence 3334445555555555555555555432 1233355555555555555555555555554421 1211 2445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011902 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 208 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
.+...|++++|...|++..+.. +.+..++..+...|...|++++|.+.+++..+.. +.+...|..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555432 1133445555555555555555555555544421 22333343333122222355
Q ss_pred HHHHHHHHHHHH
Q 011902 288 KEALGILDRMEA 299 (475)
Q Consensus 288 ~~a~~~~~~m~~ 299 (475)
++|.+.|++..+
T Consensus 159 ~~A~~~~~~a~~ 170 (272)
T 3u4t_A 159 VKADSSFVKVLE 170 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3.6e-12 Score=113.63 Aligned_cols=219 Identities=13% Similarity=0.002 Sum_probs=191.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011902 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..++..+...|...|++++|.+.|++..+. .+..++..+...|.. .+++++|...|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 5677888899999999999999999999983 356778888899999 999999999999999876 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011902 309 ISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR----TKRLKEAEKLFSKMLASGVKPDGLACS 380 (475)
Q Consensus 309 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 380 (475)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8889899999 999999999999999876 66788889999999 999999999999999875 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011902 381 VMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 381 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.+++..+.+. ...+.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 222 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF 222 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence 77778887 899999999999999875 55778889999999 9999999999999998862 66778
Q ss_pred HHHHHHHh----cCCHhHHhhcccc
Q 011902 453 KIVEHLKK----SGDEELITNLPKI 473 (475)
Q Consensus 453 ~l~~~~~~----~g~~~~a~~l~~~ 473 (475)
.+...+.+ .|+.++|.+..+.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHH
Confidence 88889998 8999999877653
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1.5e-13 Score=122.52 Aligned_cols=244 Identities=8% Similarity=-0.132 Sum_probs=125.8
Q ss_pred cCChhhHHHHHHHhccCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011902 177 KGDMIAADELMKGMGLIDL---YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
.|++++|++.|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3555666666666554321 1124455555666666666666666666665543 22455666666666666666666
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 333 (475)
.+.++++.+.. +.+..++..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++..
T Consensus 97 ~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELD---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66666666532 234555666666666666666666666666553 2333333333334445566666666665554
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011902 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (475)
..... +...+ .++..+...++.++|.+.+.+..+. .|+ ...+..+...+...|++++|...++++.+..
T Consensus 172 ~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 245 (275)
T 1xnf_A 172 EKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 245 (275)
T ss_dssp HHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred hcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence 43221 22222 2444555555556666666655432 121 2445555555556666666666666665542
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011902 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 409 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (475)
| .+ +.....++...|++++|++.+
T Consensus 246 p-~~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 V-HN---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C-TT---CHHHHHHHHHHHHHHHC----
T ss_pred c-hh---HHHHHHHHHHHHHHHhhHHHH
Confidence 1 11 222233444555555555443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=2.2e-12 Score=111.04 Aligned_cols=203 Identities=11% Similarity=-0.009 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011902 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 3444455555555555555555555555432 2334455555555555555555555555554432 22344555555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011902 314 KGFCVE-GNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391 (475)
Q Consensus 314 ~~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 391 (475)
..+... |++++|...++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 555555 66666666666655522222 23445556666666666666666666665432 1234555666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+++|...++++.+... ..+...+..+...+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVE--VLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 6666666666665431 0244555555566666666666666666665543
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=5.5e-14 Score=125.41 Aligned_cols=246 Identities=10% Similarity=-0.080 Sum_probs=141.5
Q ss_pred cCCHHHHHHHHHhcccCCC---CCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011902 142 ARLANEAMWVLRKMPEFDL---RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 218 (475)
.|++++|+..|+.+.+... +.+...+..+...+...|++++|.+.|+++.... +.+..+|..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3556666666666655321 1134456666666666666666666666665543 33456666666666667777777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
...|++..+.. +.+..++..+...|.+.|++++|.+.++++.+.. |+.......+..+...|++++|...+++..
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77776666643 2245666666677777777777777777766632 333333334444455567777777776655
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011902 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 299 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
... +++...+ .++..+...++.++|...++......... +...+..+...|...|++++|...|++..+. .|+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 442 2232333 35555666666677777776665432211 1355677777777777777777777777754 342
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 011902 376 GLACSVMIRELCLGGQVLEGFCLY 399 (475)
Q Consensus 376 ~~~~~~ll~~~~~~g~~~~a~~~~ 399 (475)
. +.....++...|++++|.+.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 222233455666666665554
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=2.2e-13 Score=119.04 Aligned_cols=208 Identities=14% Similarity=0.129 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011902 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 344445555555555555555555555432 2344555555555555566666666655555442 224455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011902 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 394 (475)
.+...|++++|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665554322 34456666666666666666666666666542 2245566666666677777777
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011902 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
|...++++.+.. +.+..++..+...+...|++++|.+.++++++.. +.+...+.
T Consensus 178 A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 231 (243)
T 2q7f_A 178 ALSQFAAVTEQD---PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALH 231 (243)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHH
Confidence 777777766653 1245666777777777777777777777777665 33333333
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1e-12 Score=122.18 Aligned_cols=148 Identities=7% Similarity=0.009 Sum_probs=66.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC-hhhHHHHHHHhccCCCCCChhhHHHHHHH
Q 011902 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD-MIAADELMKGMGLIDLYPDIITYVSMIKG 208 (475)
Q Consensus 130 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 208 (475)
..|..+..++.+.|++++|+..+++..+.. +-+...|+.+..++...|+ +++|++.|++..... +-+...|+.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 334444444444555555555555544432 1234444444444545453 555555555444432 2234444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011902 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 209 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
+...|++++|+..|+++++... -+...|..+..++.+.|++++|+..++++.+.. +.+...|+.+..++..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 4444444444444444444321 134444444444444444444444444444432 2234444444444444
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=3.8e-13 Score=117.51 Aligned_cols=197 Identities=15% Similarity=0.115 Sum_probs=78.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011902 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 33334444444455555555554444322 1234444444444444555555555544444322 223344444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011902 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCCHHHH
Confidence 4444444444444444432 1234444444444444444444444444444421 22333444444444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011902 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 291 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 334 (475)
...+++..+.. +.+..++..+..++...|++++|...++++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 44444444331 12233344444444444444444444444433
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=2.2e-12 Score=119.99 Aligned_cols=249 Identities=12% Similarity=0.030 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCC-HHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011902 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL-ANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 172 (475)
...|..+...+...|+++.|++.++...+.. +-+...|+.+..++...|+ +++|+..|++..+.. +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4566777778888999999999999999876 5678899999999999997 999999999998865 347889999999
Q ss_pred HHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-cCChH
Q 011902 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR-LGSME 251 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~ 251 (475)
++...|++++|+..|+++.... +-+...|..+..++.+.|++++|+..++++++.... +...|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998865 567889999999999999999999999999997533 78899999999999 66657
Q ss_pred HH-----HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----
Q 011902 252 RA-----LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG--MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG---- 320 (475)
Q Consensus 252 ~a-----~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---- 320 (475)
+| +..+++..... +-+...|..+...+...| ++++|++.+.++ +. .+.+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~---P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV---PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 77 58888888753 456778888888888887 688999988887 32 3446677888888888764
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCChhhHHHHHHHHH
Q 011902 321 -----NLDEAYQLIDKV-VAGGSVSSGGCYSSLVVELV 352 (475)
Q Consensus 321 -----~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~ 352 (475)
.+++|.++++++ .+.+.. ....|..+...+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 258888888888 554421 3344555554443
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=5.9e-13 Score=126.27 Aligned_cols=135 Identities=13% Similarity=0.031 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHH
Q 011902 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-S----SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV--K---PDGL 377 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~---p~~~ 377 (475)
.+..+...+...|++++|...+++..+.... . ...++..+...|...|++++|.+.+++..+... . ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555566666666666666655432110 0 112566666677777777777777766654210 0 1134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 378 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
++..+...+...|++++|...+++..+.... +.....++..+...|...|++++|.+.+++.++.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5666666777777777777777776653110 0112346677777777888888888888777654
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=4.6e-13 Score=126.55 Aligned_cols=300 Identities=12% Similarity=0.034 Sum_probs=173.4
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CH
Q 011902 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCAA-NL 234 (475)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~ 234 (475)
...+......+...|++++|...|++....+ +.+ ...+..+...+...|++++|...+++.... +-.| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3334444455555555555555555554432 112 234455555555556666665555554321 1111 13
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CCcHHHHHHHHHHHHhcCC--------------------HHHHH
Q 011902 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDC---SPNVVTYTSVIQIFCGKGM--------------------MKEAL 291 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--------------------~~~a~ 291 (475)
.++..+...|...|++++|...+++..+..... .....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 345555666666666666666666554421000 0013355556666666666 66666
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHH
Q 011902 292 GILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-S----SGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 292 ~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~ 361 (475)
..+++..+. +..| ...++..+...+...|++++|...+++..+.... + ...++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666654321 1111 1235666667777778888888777776542110 1 1236777778888888888888
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHH
Q 011902 362 KLFSKMLAS----GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 362 ~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 433 (475)
..+++..+. +-.+. ..++..+...+...|++++|...+++..+.... +.....++..+...|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888877642 11111 456677777888888888888888887764211 1112557778888888889999999
Q ss_pred HHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCH
Q 011902 434 KLARFMLKK----RI-WLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 434 ~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~ 464 (475)
+.+++.++. +. +....++..+...+...|+.
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 888887754 11 12234566677777777765
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=1.1e-12 Score=125.72 Aligned_cols=336 Identities=12% Similarity=0.037 Sum_probs=215.2
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC----
Q 011902 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP---SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR---- 143 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---- 143 (475)
.++.+.|.+.|.-..... . ...+..+...+...|++ ++|.+.++...+. ++..+..+...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~~g-~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG-Y---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT-C---CTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred CCCHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence 466677777777765442 1 12222233333344555 8888888877653 5556666666455444
Q ss_pred -CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh---hHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH---
Q 011902 144 -LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI---AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE--- 216 (475)
Q Consensus 144 -~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--- 216 (475)
++++|+..|++..+.|. ...+..|...|...+..+ .+.+.+......| +...+..+...|...+.++
T Consensus 88 ~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 77889999998888653 336667777777665433 4455555554433 3556667777777777544
Q ss_pred -HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc----CCHH
Q 011902 217 -DACGLFKVMKRHGCAANLVAYSALLDGICRLG---SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK----GMMK 288 (475)
Q Consensus 217 -~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~ 288 (475)
.+..+++..... ++..+..+...|.+.| +.++|++.|++..+.+ +++...+..+...|... ++++
T Consensus 162 ~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 162 DDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp HHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred HHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 444444443332 3337788888888899 8999999999998865 46666656677777554 6899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHH
Q 011902 289 EALGILDRMEALGCAPNRVTISTLIKG-F--CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-----RLKEA 360 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a 360 (475)
+|+..|++.. .| +...+..+-.. + ...+++++|.+.|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999987 43 44555666555 3 46889999999999999877 5566777777776 55 99999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHH
Q 011902 361 EKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEA 432 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 432 (475)
.+.|++.. . -+...+..|-..|.. ..+.++|...|++..+.| +......|...|.. ..+.++|
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-----QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-----CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 99999877 3 355666666666655 348999999999999876 34556677777764 4589999
Q ss_pred HHHHHHHHHcCC
Q 011902 433 AKLARFMLKKRI 444 (475)
Q Consensus 433 ~~~~~~m~~~~~ 444 (475)
..+++...+.|.
T Consensus 378 ~~~~~~A~~~g~ 389 (452)
T 3e4b_A 378 YVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHCCC
Confidence 999999998883
No 58
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=2.3e-12 Score=123.52 Aligned_cols=336 Identities=12% Similarity=0.008 Sum_probs=220.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCH---HHHHHHHHhcccCCCCCCHhhHHHHHHHHH
Q 011902 99 RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA---NEAMWVLRKMPEFDLRPDTIIYNNVIRLFC 175 (475)
Q Consensus 99 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 175 (475)
.+...+...|+++.|.++++...+.| +...+..+...|...|+. ++|...|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 34566677899999999999998876 334444555666667777 8999999988863 6666777777555
Q ss_pred hcC-----ChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011902 176 EKG-----DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE---DACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 176 ~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
..+ ++++|.+.|++....|. ...+..|...|...+..+ ++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 78899999999988662 336777777777665533 4555555555555 345666677778877
Q ss_pred CChH----HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 011902 248 GSME----RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG---MMKEALGILDRMEALGCAPNRVTISTLIKGFCVE- 319 (475)
Q Consensus 248 g~~~----~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~- 319 (475)
+.++ .+..++...... .|+ .+..+...|...| +.++|++.|++..+.| .++...+..+-..|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~----~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNT----TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTT----CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred CCcccCHHHHHHHHHHHHcC----CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 7544 444445444431 233 7788888899999 9999999999999887 34555556666666554
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 011902 320 ---GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE-L--VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG--- 390 (475)
Q Consensus 320 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--- 390 (475)
+++++|...|+... .| +...+..|... | ...+++++|.+.|++..+.| +...+..|-..|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 79999999999988 33 44556666666 4 46899999999999999876 5566666766666 55
Q ss_pred --CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----
Q 011902 391 --QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK---- 460 (475)
Q Consensus 391 --~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~---- 460 (475)
++++|.+.|++.. .| +...+..|...|.. ..++++|.++|++..+.|. +.....+...|..
T Consensus 300 ~~d~~~A~~~~~~Aa-~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR-----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGT 370 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT-----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTB
T ss_pred CCCHHHHHHHHHHHh-CC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCC
Confidence 9999999999888 44 56778888877766 4499999999999998773 2334445555543
Q ss_pred cCCHhHHhhcc
Q 011902 461 SGDEELITNLP 471 (475)
Q Consensus 461 ~g~~~~a~~l~ 471 (475)
..+.+.|....
T Consensus 371 ~~d~~~A~~~~ 381 (452)
T 3e4b_A 371 KPDPLNAYVFS 381 (452)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 33555555544
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=1.1e-12 Score=120.23 Aligned_cols=272 Identities=13% Similarity=0.086 Sum_probs=154.7
Q ss_pred HHHHHhcCChhhHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHH
Q 011902 171 IRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCA-ANLVAYSALL 241 (475)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll 241 (475)
...+...|++++|...|+++.... +.+ ...+..+...+...|++++|...+++..+. +-. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 334444455555555555444332 111 233444445555555555555555443321 101 1133455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC---CCcHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 011902 242 DGICRLGSMERALELLGEMEKEGGDC---SPNVVTYTSVIQIFCGKGM--------------------MKEALGILDRME 298 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~ 298 (475)
..|...|++++|...+++..+..... .....++..+...+...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 56666666666666665554321000 0012245555556666666 666666665543
Q ss_pred Hc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 299 AL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----VSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 299 ~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
.. +..+ ....+..+...+...|++++|...+++..+... .....++..+...+...|++++|.+.+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 1111 133566666777777888888877777654211 0112367777888888888888888888776
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 369 ASGV-KPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 369 ~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 440 (475)
+... ..+ ..++..+...+...|++++|...+++..+.... +.....++..+...|.+.|++++|.+.+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4210 111 456677777888899999999988887764110 11124577788888999999999999999888
Q ss_pred HcC
Q 011902 441 KKR 443 (475)
Q Consensus 441 ~~~ 443 (475)
+..
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 653
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1.1e-12 Score=124.37 Aligned_cols=267 Identities=15% Similarity=0.080 Sum_probs=163.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHHHH
Q 011902 206 IKGFCNAGRLEDACGLFKVMKRHGCAANL----VAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTSVI 278 (475)
Q Consensus 206 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li 278 (475)
...+...|++++|...|++..+.+.. +. ..+..+...|...|++++|...+++..+.. ...+....++..+.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 33444445555555555544443211 11 234444455555555555555555443310 00012233444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhC-
Q 011902 279 QIFCGKGMMKEALGILDRMEAL----GC-APNRVTISTLIKGFCVEGN-----------------LDEAYQLIDKVVAG- 335 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~~~~~- 335 (475)
..|...|++++|...+++..+. +- .....++..+...|...|+ +++|...+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555556665555555554322 10 1123345556666666666 67777666665432
Q ss_pred ---CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 336 ---GS-VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 336 ---~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
+. .....++..+...|...|++++|.+.+++..+... .++ ...+..+...+...|++++|...+++..+..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 11 11234688888999999999999999998875311 112 2367788889999999999999999887642
Q ss_pred CC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011902 407 FL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-----WLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 407 ~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.. +.....++..+...+...|++++|.+.+++.+.... ......+..+...+.+.|++++|.+.++.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11 001256788899999999999999999999886521 12234778889999999999999887653
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.1e-12 Score=123.91 Aligned_cols=300 Identities=13% Similarity=0.001 Sum_probs=194.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC----HhhHHHHHHHHHhcCChhhHHHHHHHhccC----CCC-CC
Q 011902 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD----TIIYNNVIRLFCEKGDMIAADELMKGMGLI----DLY-PD 198 (475)
Q Consensus 128 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~ 198 (475)
....+......+...|++++|...|++..+.+. .+ ...|..+...+...|++++|.+.+++.... +-. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344444555566777777777777777665431 12 245666677777777777777777665331 111 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHHHHHHHHHHHhcCC--------------------hHHH
Q 011902 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGC-----AANLVAYSALLDGICRLGS--------------------MERA 253 (475)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~~~~~~~~~ll~~~~~~g~--------------------~~~a 253 (475)
..++..+...+...|++++|...+++..+... .....++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34566677777777888888777776654310 0113466777777888888 8888
Q ss_pred HHHHHHHHhcC--CC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 011902 254 LELLGEMEKEG--GD-CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-APN----RVTISTLIKGFCVEGNLDEA 325 (475)
Q Consensus 254 ~~~~~~~~~~~--~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a 325 (475)
.+.+++..... .+ .+....++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88877665420 00 112234677777888888888888888887654210 111 23677778888889999999
Q ss_pred HHHHHHHHhCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 011902 326 YQLIDKVVAGG----SVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 326 ~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a 395 (475)
...+++..+.. ..+ ...++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 98888876431 111 145677888889999999999999988765211 111 45677778888899999999
Q ss_pred HHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCH
Q 011902 396 FCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 396 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~ 429 (475)
.+.+++..+. +.. .....++..+...+...|+.
T Consensus 327 ~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDK-SGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhhHh
Confidence 9999987754 211 12355667777777776655
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=9.9e-13 Score=119.38 Aligned_cols=238 Identities=15% Similarity=0.091 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCC
Q 011902 202 YVSMIKGFCNAGRLEDACGLFKVMKRH-------GCAANLVAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSP 269 (475)
Q Consensus 202 ~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~ 269 (475)
+..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++..... ...+.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 344444444444444444444444331 111223344444455555555555555554444310 00012
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 011902 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEAL------GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG------G 336 (475)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~ 336 (475)
...++..+...|...|++++|...+++..+. +..| ....+..+...+...|++++|...+++..+. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 2334445555555555555555555554432 1111 2334455555566666666666666655442 1
Q ss_pred CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 011902 337 SVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-------GVKPDGL-------ACSVMIRELCLGGQVLEGFCLYED 401 (475)
Q Consensus 337 ~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~ 401 (475)
..| ...++..+...|...|++++|.+.++++.+. ...+... .+..+...+...+.+.++...++.
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 111 2345566666666777777777777666542 1111111 112222223344555556666666
Q ss_pred HHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
..... +....++..+...|.+.|++++|.+++++.++.
T Consensus 270 ~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 270 CKVDS---PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ----C---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCC---chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 65532 235677888899999999999999999888764
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=1.5e-10 Score=104.97 Aligned_cols=220 Identities=11% Similarity=-0.006 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHh-cCCCCCCcHHHHHHHHHH
Q 011902 216 EDACGLFKVMKRHGCAANLVAYSALLDGIC-------RLGSM-------ERALELLGEMEK-EGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~~li~~ 280 (475)
++|..+|++..+.. +-+...|..+...+. +.|++ ++|..+|++..+ .. +.+...|..++..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~---p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL---KKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---cccHHHHHHHHHH
Confidence 45555666555532 224555555555443 23554 666666666665 11 2344566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCH
Q 011902 281 FCGKGMMKEALGILDRMEALGCAPN-RV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV-RTKRL 357 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~ 357 (475)
+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.+.. +...|........ ..|++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCH
T ss_pred HHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCH
Confidence 66666777777777666653 332 22 5666666666667777777777776664422 2333332222211 25777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011902 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG-FLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (475)
++|.++|++.++.. +-+...|..++..+.+.|++++|..+|++..+.. +.|......|..++..+.+.|+.++|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777766541 1245566666666667777777777777777653 222124556666676666777777777777
Q ss_pred HHHHHcC
Q 011902 437 RFMLKKR 443 (475)
Q Consensus 437 ~~m~~~~ 443 (475)
+++++..
T Consensus 265 ~~a~~~~ 271 (308)
T 2ond_A 265 KRRFTAF 271 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 7776654
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=1.3e-10 Score=105.42 Aligned_cols=184 Identities=9% Similarity=0.040 Sum_probs=97.7
Q ss_pred hhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HH-HHHHHHHHHHhcCChHHHHHHHH
Q 011902 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN-LV-AYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
++|..+|++....-.+-+...|..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|.++|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555555554211223345555555555556666666666655553 222 22 55555556666666666666666
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 011902 259 EMEKEGGDCSPNVVTYTSVIQIF-CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG- 336 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 336 (475)
+..+.. +.+...|....... ...|++++|..+|++..+.. +-+...+..++..+.+.|++++|..+|++.....
T Consensus 159 ~a~~~~---p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 159 KAREDA---RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTST---TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHhcC---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 665532 22333333222221 12466666666666655432 2245555666666666666666666666666642
Q ss_pred CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011902 337 SVS--SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 337 ~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
..| ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 232 2345666666666666666666666666643
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=4.5e-12 Score=116.19 Aligned_cols=133 Identities=16% Similarity=0.121 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-Chh
Q 011902 273 TYTSVIQIFCGKGMMKEALGILDRMEAL----GCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG----SVS-SGG 342 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~ 342 (475)
++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++..+.. ..+ ...
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4444445555555555555555444321 100 011244555555555566666665555544321 000 133
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
++..+...|...|++++|.+.+++..+. +-. ....++..+...+...|++++|...+++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4555666666666666666666665432 100 11234555666666777777777777766654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=6.2e-11 Score=111.19 Aligned_cols=299 Identities=8% Similarity=-0.014 Sum_probs=198.4
Q ss_pred HHHhcCCHHHHHHHHHhcccC--CC--CCCHhhHHHHHHHH--HhcCChhhHH-----------HHHHHhccCCCCCChh
Q 011902 138 LCEKARLANEAMWVLRKMPEF--DL--RPDTIIYNNVIRLF--CEKGDMIAAD-----------ELMKGMGLIDLYPDII 200 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~--~~~g~~~~a~-----------~~~~~m~~~~~~~~~~ 200 (475)
.+.+.+++++|..+++++.+. .+ .++...|-.++..- .-.++.+.+. +.++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 345677778887777776442 22 22333333333221 1122333333 5555553311 1111
Q ss_pred h------HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--
Q 011902 201 T------YVSMIKGFCNAGRLEDACGLFKVMKRH----GCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDC-- 267 (475)
Q Consensus 201 ~------~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-- 267 (475)
. +......+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+.+..+.....
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 222455677889999999999988764 1111 34678888899999999999999998877531111
Q ss_pred --CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----C
Q 011902 268 --SPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA-----G 335 (475)
Q Consensus 268 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~ 335 (475)
+....+++.+...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++..+ .
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 112456778888999999999999999887643 1111 124677888899999999999999998876 3
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC
Q 011902 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~ 408 (475)
.......++..+...|.+.|++++|.+.+++..+. +-......+..+...+...|+ +++|..++++. +..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~ 335 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY 335 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH
Confidence 31334567888999999999999999999987753 111112335566677788888 66676666655 322
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 409 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+ .....+..+...|...|++++|.+.+++.++.
T Consensus 336 ~-~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 336 A-DLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 24567888999999999999999999998764
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=1.4e-11 Score=118.74 Aligned_cols=193 Identities=10% Similarity=-0.037 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011902 233 NLVAYSALLDGICRLGSM-ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
+...+..+...|...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|++..+. .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHH
Confidence 444455555555555555 55555555554432 223445555555555555555555555555443 234444555
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCC
Q 011902 312 LIKGFCVE---------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT--------KRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 312 li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p 374 (475)
+...+... |++++|...+++..+.... +...|..+..+|... |++++|.+.|++..+. .|
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p 252 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DR 252 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CC
Confidence 55555555 5666666666665554322 345556666666665 6677777777766654 23
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011902 375 ----DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 375 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (475)
+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|++.+
T Consensus 253 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD---PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666667777777777777777776654 224556666666666677776666543
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=9.9e-11 Score=97.35 Aligned_cols=165 Identities=18% Similarity=0.110 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011902 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
..+|..+...+...|++++|++.|++..+.. +-+..++..+...|.+.|++++|...+....... +.+...+..+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHHHH
Confidence 3344444444545555555555555444432 1234444444445555555555555554444421 22333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011902 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 358 (475)
..+...++++.+...+.+..... +.+...+..+..++.+.|++++|++.|++..+.+.. +..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 44444455555555544444332 123334444444444455555555555444443321 3344444455555555555
Q ss_pred HHHHHHHHHHH
Q 011902 359 EAEKLFSKMLA 369 (475)
Q Consensus 359 ~a~~~~~~m~~ 369 (475)
+|.+.|++.++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=3e-11 Score=116.51 Aligned_cols=214 Identities=11% Similarity=-0.010 Sum_probs=182.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011902 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM-KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 327 (475)
.+++++..+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|..
T Consensus 83 ~~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3667777777776632 45788899999999999999 99999999998764 3357889999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 011902 328 LIDKVVAGGSVSSGGCYSSLVVELVRT---------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--------G 390 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------g 390 (475)
.|++..+.. |+...+..+...|... |++++|.+.|++..+.. +-+...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 999999876 5568899999999999 99999999999999763 33578888888899888 9
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011902 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
++++|...|++..+.......+...|..+..+|...|++++|.+.|+++++.. +.+...+..+..++...|+.++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999742101478899999999999999999999999999987 66777888999999999999888754
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=2.7e-11 Score=113.69 Aligned_cols=296 Identities=8% Similarity=-0.064 Sum_probs=199.9
Q ss_pred HhcCChhHHHHHHHHHHhcC--C--ccCHHhHHHHHHH--HHhcCCHHHHH-----------HHHHhcccCCCCCCHh--
Q 011902 105 RIKQNPSIIIDVVEAYKEEG--C--VVSVKMMKVIFNL--CEKARLANEAM-----------WVLRKMPEFDLRPDTI-- 165 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~ll~~--~~~~~~~~~A~-----------~~~~~~~~~~~~~~~~-- 165 (475)
.+.++++.|..+++++.+.- . .++...|-.++.. ..-.+.++.+. +.++.+.... .+..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 34577888888877775531 1 2233333333331 11223333444 5555554311 1111
Q ss_pred ----hHHHHHHHHHhcCChhhHHHHHHHhccC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----
Q 011902 166 ----IYNNVIRLFCEKGDMIAADELMKGMGLI----DLYP-DIITYVSMIKGFCNAGRLEDACGLFKVMKRHG--C---- 230 (475)
Q Consensus 166 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~---- 230 (475)
.+......+...|++++|.+.+++.... +-.+ ...++..+...+...|++++|...+++..+.- .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 1222556677889999999999988653 1111 24578888899999999999999998877531 1
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-
Q 011902 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGD---CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GC- 302 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~- 302 (475)
.....+++.+...|...|++++|.+.+++..+.... .+....++..+...|...|++++|...+++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 112457888889999999999999999988753100 0112247888899999999999999999888762 33
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC
Q 011902 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG----SVSSGGCYSSLVVELVRTKR---LKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~ 375 (475)
+....++..+...+.+.|++++|...+++..+.. .......+..+...+...|+ .++|..++++. +..|+
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~ 337 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYAD 337 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHH
Confidence 3346678888999999999999999999876531 11112335667778888888 67777777665 33333
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 376 -GLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 376 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
...+..+...|...|++++|...+++..+.
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 346677888999999999999999988764
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=1e-10 Score=97.32 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=82.1
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011902 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+..+|..+...+.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...++....... .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 33445555555555555555555555544432 23344455555555555555555555555444321 23444444445
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011902 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 322 (475)
.+...++++.|...+.+..+.. +.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN---TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 5555555555555555554432 2334445555555555555555555555554432 22344455555555555555
Q ss_pred HHHHHHHHHHHh
Q 011902 323 DEAYQLIDKVVA 334 (475)
Q Consensus 323 ~~a~~~~~~~~~ 334 (475)
++|.+.|++.++
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.8e-11 Score=110.92 Aligned_cols=240 Identities=12% Similarity=0.011 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHhccC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-C
Q 011902 165 IIYNNVIRLFCEKGDMIAADELMKGMGLI-------DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------G-C 230 (475)
Q Consensus 165 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g-~ 230 (475)
.++..+...+...|++++|..+++++... ..+....++..+...+...|++++|...+++..+. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444455555555555555555544331 11222334445555555555555555555554432 1 1
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 011902 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----- 300 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 300 (475)
+....++..+...|...|++++|...++++.+.. ...+.....+..+...+...|++++|.+++++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1223445555556666666666666665555420 001123344555555666666666666666655442
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCh-------hhHHHHHHHHHhcCCHHHHHHHH
Q 011902 301 -GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG-------GSVSSG-------GCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 301 -~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
+..| ...++..+...+...|++++|...++++.+. ...+.. ..+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1112 2334555566666666666666666665542 111111 11122222233334444445555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 365 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
....... ..+..++..+...|...|++++|.+.+++..+.
T Consensus 268 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5544321 223456667777777788888888887777653
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=6.2e-09 Score=103.41 Aligned_cols=406 Identities=11% Similarity=0.007 Sum_probs=263.2
Q ss_pred CCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcC-CccCHHh
Q 011902 57 LDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN---PSIIIDVVEAYKEEG-CVVSVKM 131 (475)
Q Consensus 57 ~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 131 (475)
.+...+...++.+ ..+....+..+|..+... ++.+...|...+......++ .+.+..+|+...... .+|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4777777777765 345666677777766553 55677777788887777777 888999998887754 2478888
Q ss_pred HHHHHHHHHhcCCH--------HHHHHHHHhccc-CCC-CC-CHhhHHHHHHHHH---------hcCChhhHHHHHHHhc
Q 011902 132 MKVIFNLCEKARLA--------NEAMWVLRKMPE-FDL-RP-DTIIYNNVIRLFC---------EKGDMIAADELMKGMG 191 (475)
Q Consensus 132 ~~~ll~~~~~~~~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~ 191 (475)
|..-+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|+...
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88877766665543 334477776553 354 34 3467777776543 2345677888888887
Q ss_pred cCCCCCChhhHHHHHHHHHhcCC-------------HHHHHHHHHHHHH--CCCC---------------c-----C---
Q 011902 192 LIDLYPDIITYVSMIKGFCNAGR-------------LEDACGLFKVMKR--HGCA---------------A-----N--- 233 (475)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~g~-------------~~~a~~~~~~m~~--~g~~---------------~-----~--- 233 (475)
......-..+|......-...+. ++.|...+.++.. .++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 52211122344333222111111 2233444443321 1111 1 0
Q ss_pred HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCC
Q 011902 234 LVAYSALLDGICRLG-------SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL-GILDRMEALGCAPN 305 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~ 305 (475)
...|...+.---..+ ..+.+..+|+++... ++-....|-..+..+...|+.++|. ++|++.... ++.+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 234555544333222 123456678887764 3456777888888888889988997 999998864 4456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------hhhHHHHHHHHHhcCCHHHHHHHH
Q 011902 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------SVSS------------GGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~~ 364 (475)
...+...+....+.|++++|.++|+.+.... ..|+ ...|...+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6667778888889999999999999987631 0131 235777788778889999999999
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 365 SKMLAS-GVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 365 ~~m~~~-~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+..+. + .+....|......-.+ .++.+.|.++|+...+.- | .+...|...+......|+.+.|..+|+..+..
T Consensus 458 ~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 458 GKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--A-TDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--C-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999876 2 1222333322222223 356899999999998863 2 35677788888888899999999999999887
Q ss_pred CCC--CChhhHHHHHHHHHhcCCHhHHhhccc
Q 011902 443 RIW--LQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 443 ~~~--~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+ -....|...+..-.+.|+.+.+..+.+
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 632 244678888888889999998887764
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=8.7e-10 Score=102.89 Aligned_cols=297 Identities=11% Similarity=0.036 Sum_probs=184.9
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCH----hhHHHHHHHHHhcCChhhHHHHHHHhccCCC-CCC----hhhHHHHHH
Q 011902 137 NLCEKARLANEAMWVLRKMPEFDLRPDT----IIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPD----IITYVSMIK 207 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~ 207 (475)
..+...|++++|...+++..+.....+. ..++.+...+...|++++|.+.+++...... ..+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3555678888888887776554311222 1455666677778888888888877654210 111 123556677
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCC--c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHHH
Q 011902 208 GFCNAGRLEDACGLFKVMKRH----GCA--A-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSVI 278 (475)
Q Consensus 208 ~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li 278 (475)
.+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.........+ ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 778888888888888876652 221 2 2345666777888889999999988887763221111 234566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHH
Q 011902 279 QIFCGKGMMKEALGILDRMEALGCAPN--RVTIS----TLIKGFCVEGNLDEAYQLIDKVVAGGSVSS---GGCYSSLVV 349 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~ 349 (475)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 788888999999988888764311111 11111 233446788999999988888765442211 224566778
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011902 350 ELVRTKRLKEAEKLFSKMLAS----GVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 424 (475)
.+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++...... .. ..+..+.
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~----~~----g~~~~~~ 333 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN----RT----GFISHFV 333 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----HH----CCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc----cc----cHHHHHH
Confidence 888889999999888877542 222222 2455566677888999999988888776421 00 1112233
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 011902 425 RKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~~ 443 (475)
..| +....+++.+....
T Consensus 334 ~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 334 IEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp TTH--HHHHHHHHHHHHTT
T ss_pred Hcc--HHHHHHHHHHHhCC
Confidence 444 45566666666554
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=5.8e-10 Score=104.35 Aligned_cols=232 Identities=9% Similarity=-0.020 Sum_probs=166.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-Cc----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---C-CcHHHHH
Q 011902 205 MIKGFCNAGRLEDACGLFKVMKRHGC-AA----NLVAYSALLDGICRLGSMERALELLGEMEKEGGDC---S-PNVVTYT 275 (475)
Q Consensus 205 li~~~~~~g~~~~a~~~~~~m~~~g~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~-~~~~~~~ 275 (475)
....+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+.+..+..... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456788999999999998876421 12 24567788888999999999999998876521111 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCChhhHH
Q 011902 276 SVIQIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA-----GGSVSSGGCYS 345 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 345 (475)
.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|...+++..+ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 8888899999999999999877642 2111 234677788889999999999999998877 4433 267788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011902 346 SLVVELVRTKRLKEAEKLFSKMLASGV---KPD-GLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 346 ~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
.+...|.+.|++++|...+++..+... .|. ...+..+-..+...|+ +++|..++++ .+..+ .....+..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~-~~~~~~~~ 341 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHA-YIEACARS 341 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHH-HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChh-HHHHHHHH
Confidence 889999999999999999999876311 122 2345555556667777 6667666665 32222 23456778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011902 419 LLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 419 l~~~~~~~g~~~~A~~~~~~m~~ 441 (475)
+...|...|++++|.+.+++.++
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999999988875
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=7.9e-10 Score=103.19 Aligned_cols=298 Identities=12% Similarity=-0.005 Sum_probs=204.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC----HHHH
Q 011902 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII----TYVSMIKGFCNAGRLEDACGLFKVMKRHGC-AAN----LVAY 237 (475)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~ 237 (475)
+......+...|++++|...+++........+.. +++.+...+...|++++|...+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556678999999999999877643222222 456677788899999999999998765311 112 2345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC--CCCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHH
Q 011902 238 SALLDGICRLGSMERALELLGEMEKEG--GDCS--P-NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA--P--NRVT 308 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~ 308 (475)
..+...+...|++++|...+++..+.. .+.+ | ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 677888999999999999999887531 1111 2 3445667788899999999999999987754221 1 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 011902 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYS-----SLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLAC 379 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~ 379 (475)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 777888899999999999999988653211111 1122 233447799999999999998875432111 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC----CCh
Q 011902 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIW----LQG 448 (475)
Q Consensus 380 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~----~~~ 448 (475)
..+...+...|++++|...+++....... +.....++..+...+...|+.++|.+.+++.+.. |.. ...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g 336 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 336 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHcc
Confidence 66778889999999999999988754211 1011236677788888999999999999888753 221 112
Q ss_pred hhHHHHHHHHHhcCCH
Q 011902 449 PYVDKIVEHLKKSGDE 464 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~ 464 (475)
.....++..+...+..
T Consensus 337 ~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 337 EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCC
Confidence 2344566666666664
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=3.3e-10 Score=93.84 Aligned_cols=162 Identities=12% Similarity=0.039 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011902 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444455555666666666666555432 2344555555555556666666666665554432 234445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011902 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555442 2244455555555555555555555555555432 23344455555555555555555
Q ss_pred HHHHHHHH
Q 011902 291 LGILDRME 298 (475)
Q Consensus 291 ~~~~~~m~ 298 (475)
...+++..
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=3e-08 Score=98.53 Aligned_cols=375 Identities=9% Similarity=-0.005 Sum_probs=246.6
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-cCC-cc-CHHhHHHHHHHHH--
Q 011902 74 SQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP--------SIIIDVVEAYKE-EGC-VV-SVKMMKVIFNLCE-- 140 (475)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~-- 140 (475)
...+..+|..........|++..|...+....+.++. +.+.++|+.... .|. .+ +...|...+....
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 6777777777655433347888888888877665543 334567776543 455 44 4577887777544
Q ss_pred -------hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC-------------hhhHHHHHHHhcc--CCC---
Q 011902 141 -------KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD-------------MIAADELMKGMGL--IDL--- 195 (475)
Q Consensus 141 -------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------------~~~a~~~~~~m~~--~~~--- 195 (475)
..++++.+..+|+.+.......-..+|......--..+. ++.|...+.++.. .++
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 234578899999999863221122344333222111111 2233344433211 011
Q ss_pred -C-----------C--C------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011902 196 -Y-----------P--D------IITYVSMIKGFCNAG-------RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 196 -~-----------~--~------~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
+ | + ...|...+..--..+ ..+.+..+|++.... ++-....|-..+..+.+.|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 1 1 0 123444444332222 134456788888775 3457888888888888999
Q ss_pred ChHHHH-HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------H
Q 011902 249 SMERAL-ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG---------CAPN------------R 306 (475)
Q Consensus 249 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~ 306 (475)
+.++|. ++|++.... +|.+...|-..+...-+.|++++|.++|+.+.+.. -.|+ .
T Consensus 358 ~~~~a~r~il~rAi~~---~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQC---IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp CCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 999997 999999874 35667777788888899999999999999987641 0132 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011902 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAG-GSVSSGGCYSSLVVELVRT-KRLKEAEKLFSKMLASGVKPDGLACSVMIR 384 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 384 (475)
..|...++...+.|+.+.|..+|....+. +.. ....|...+..-.+. ++.+.|.++|+..++. ..-+...+...+.
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHH
Confidence 36777788888889999999999999886 221 223343333323333 4589999999999875 2335566667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011902 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
-....|+.+.|+.+|+........+......|...+..-.+.|+.+.+.++.+++.+.- |+......+..
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ 582 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTN 582 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 77788999999999999998753222345788888888889999999999999999886 34344444443
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=5.6e-10 Score=104.46 Aligned_cols=230 Identities=10% Similarity=-0.068 Sum_probs=169.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-CHHHH
Q 011902 239 ALLDGICRLGSMERALELLGEMEKEGGDCS---PNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GC-AP-NRVTI 309 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p-~~~~~ 309 (475)
.....+...|++++|...+++..+...... ....++..+...|...|++++|...+++..+. +. .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345567789999999999999886321111 13456788889999999999999999887642 11 11 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 011902 310 STLIKGFCVEGNLDEAYQLIDKVVAG----GSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKMLA-----SGVKPDGLAC 379 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 379 (475)
+.+..+|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|.+.+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 78888999999999999999988753 111 1235688889999999999999999999886 42 2226678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCC-CCChhhHHH
Q 011902 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLS--SVDSDIHSVLLLGLCRKNH---SVEAAKLARFMLKKRI-WLQGPYVDK 453 (475)
Q Consensus 380 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~-~~~~~~~~~ 453 (475)
..+...+.+.|++++|...+++..+..... +.....+..+...+...|+ +++|+.++++ .+. +.....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 888889999999999999999998853221 1123445666666777788 7777777766 222 233346678
Q ss_pred HHHHHHhcCCHhHHhhccc
Q 011902 454 IVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 454 l~~~~~~~g~~~~a~~l~~ 472 (475)
+...|.+.|+++.|.+..+
T Consensus 342 la~~y~~~g~~~~A~~~~~ 360 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYR 360 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 9999999999999987654
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=4.9e-10 Score=92.82 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011902 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..|..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445666667777777777777777776543 3456666677777777777777777777766653 23566666677777
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011902 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 324 (475)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN---PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 77777777777777766642 3455566666666667777777777776666543 2345556666666666666666
Q ss_pred HHHHHHHHHh
Q 011902 325 AYQLIDKVVA 334 (475)
Q Consensus 325 a~~~~~~~~~ 334 (475)
|...++...+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=1.3e-10 Score=103.53 Aligned_cols=208 Identities=13% Similarity=0.053 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 011902 234 LVAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL------G- 301 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~- 301 (475)
..++..+...|...|++++|...++++.+.. ...+....++..+...|...|++++|.+.+++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444455555555555555555555544320 001122344555555555555555555555554432 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 011902 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG------GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS---- 370 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 370 (475)
.+.....+..+...+...|++++|...+++..+. +..| ...++..+...|...|++++|.+.+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 0112344555556666666666666666665543 1111 2345666677777777777777777766542
Q ss_pred ---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 371 ---GVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIE----KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 ---~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
...+.. ..+..+.......+....+.. +..+. ..+..++....++..+...|...|++++|.+++++.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 112222 222222222222222222211 11111 111111224567888888888999999999999887753
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=1.8e-09 Score=93.11 Aligned_cols=207 Identities=9% Similarity=-0.109 Sum_probs=156.2
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011902 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
.|+..+......+.+.|++++|...|++..+.. .+++...+..+..++...|++++|+..+++..+.. +.+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 467888889999999999999999999998853 12677777778999999999999999999998764 235677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 011902 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-------GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSV 381 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ 381 (475)
+..++...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 899999999999999999999886543 33 45778888889999999999999999865 565 355666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011902 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 382 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
+...+... +..+++++...+. .+...|.... ....+.+++|...+++.++.. |.+......+.
T Consensus 159 l~~~~~~~-----~~~~~~~a~~~~~---~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~ 221 (228)
T 4i17_A 159 LGVLFYNN-----GADVLRKATPLAS---SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHH-----HHHHHHHHGGGTT---TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHhccc---CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 66666543 3445566655542 2344454443 334677899999999999887 45555544443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=4.1e-10 Score=113.09 Aligned_cols=167 Identities=13% Similarity=0.003 Sum_probs=125.5
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHH
Q 011902 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
-+..+|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 346677777788888888888888888877653 2356777888888888888888888888777654 34567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011902 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 207 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
.++...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..++...|+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhccc
Confidence 88888888888888888877754 2356778888888888888888888888887753 3456777788888888888
Q ss_pred HHHHHHHHHHHHH
Q 011902 287 MKEALGILDRMEA 299 (475)
Q Consensus 287 ~~~a~~~~~~m~~ 299 (475)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776543
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=8.3e-10 Score=110.90 Aligned_cols=164 Identities=14% Similarity=0.084 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011902 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 350 (475)
..+|+.+..+|.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|+..|++.++.+.. +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4445555555555555555555555554432 113444555555555555555555555555543322 34455555556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHH
Q 011902 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 351 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 430 (475)
|...|++++|++.|++.++.. .-+...+..+..+|...|++++|.+.|++..+.. +.+...|..+...+...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccHH
Confidence 666666666666666555431 1134555555566666666666666666666543 224555666666666666666
Q ss_pred HHHHHHHHHH
Q 011902 431 EAAKLARFML 440 (475)
Q Consensus 431 ~A~~~~~~m~ 440 (475)
+|.+.+++++
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555554
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=2.2e-10 Score=102.03 Aligned_cols=205 Identities=12% Similarity=0.009 Sum_probs=98.1
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHhccC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-
Q 011902 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLI------D-LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------G- 229 (475)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g- 229 (475)
..++..+...+...|++++|.+.+++.... + .+....++..+...+...|++++|...+++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 334445555555555555555555544321 1 0112334555555555556666555555555432 1
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 011902 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL---- 300 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 300 (475)
.+....++..+...|...|++++|...++++.+. +...+....++..+...|...|++++|...+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1123445555666666666666666666665542 0001123445556666666666666666666665532
Q ss_pred ---CCCCCHH-HHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 301 ---GCAPNRV-TISTLIKGFCVEGNL------DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 301 ---~~~p~~~-~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
...+... .+..+...+...+.. ..+...++.... .......++..+...|...|++++|.+.+++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111111 222222222222221 122211111110 1111245677777888888888888888887764
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=3.5e-09 Score=91.25 Aligned_cols=197 Identities=12% Similarity=0.041 Sum_probs=128.2
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHH
Q 011902 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.+++..... +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34566666677777778888888888777765433566666667777778888888888888777654 33556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHH
Q 011902 207 KGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSV 277 (475)
Q Consensus 207 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 277 (475)
..+...|++++|...+++..+... .+. ..|..+...+...|++++|++.|++..+.. +. +...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHH
Confidence 778888888888888887776532 233 446667777778888888888888887642 22 34566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011902 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 336 (475)
..+|...| ..+++.+...+ ..+...|.... ....+.+++|...+++..+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 66665433 33344444432 22333443333 233456788888888887754
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=1.4e-08 Score=89.55 Aligned_cols=90 Identities=10% Similarity=-0.140 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC--
Q 011902 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK----------NHSVEAAKLARFMLKKRIWLQ-- 447 (475)
Q Consensus 380 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~-- 447 (475)
..+...|...|++++|...|+++.+.....+.....+..+..+|... |++++|.+.++++++.. |.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDSPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTCTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCChH
Confidence 34445566666677777666666665322211334555666666544 67777777777777654 222
Q ss_pred -hhhHHHHHHHHHhcCCHhHHhhc
Q 011902 448 -GPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 448 -~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
......+...+.+.|+.+.+..+
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHH
Confidence 12344455555555555555444
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=2.8e-08 Score=87.85 Aligned_cols=245 Identities=9% Similarity=0.026 Sum_probs=151.5
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011902 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 216 (475)
+-..=.|.+..++.-...+... ........+.+++...|++... + .-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~------~---~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ------D---PTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC------C---SSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC------C---CCCHHHHHHHHHHHHh-ccc---
Confidence 3344468888888755554431 2223334455777777776642 1 1133333333333332 222
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011902 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
|...|++..+.+ .++..++..+..++...|++++|++++.+....+. ..-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776654 44566666777888888888888888888766431 013566777788888888888888888888
Q ss_pred HHHcCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 297 MEALGCAP-----NRVTISTLIKGFC--VEG--NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 297 m~~~~~~p-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
|.+. .| +..+...++.++. ..| +..+|..+|+++.+.. |+...-..++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8775 45 3455556665532 233 7888888888876654 33222334444777888888888888766
Q ss_pred HHC-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 368 LAS-----GV----KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 368 ~~~-----~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
.+. +. .-+..++..+|......|+ +|.+++.++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 542 11 2245556455555555666 7778888888764
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=6.7e-08 Score=85.42 Aligned_cols=183 Identities=7% Similarity=0.009 Sum_probs=122.0
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011902 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC-AANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 183 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
|.+.|+++...+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 45556666777788888888888888888766543 1356677778888888888888888888887
Q ss_pred hcCCCCCC-----cHHHHHHHHHHH--Hh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 262 KEGGDCSP-----NVVTYTSVIQIF--CG--KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 262 ~~~~~~~~-----~~~~~~~li~~~--~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 332 (475)
+. .| +..+...+..++ .. .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 63 35 244445555442 22 33788888888887654 344334445555778888888888888866
Q ss_pred HhCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011902 333 VAGG---------SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 333 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 376 (475)
.+.. -.-+..+...+|......|+ +|.+++.++.+. .|+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 5431 02245556455555555676 778888888865 4553
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=1.4e-08 Score=78.83 Aligned_cols=125 Identities=13% Similarity=0.177 Sum_probs=50.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011902 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.+...+...|++++|.++++++...+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 33444444444444444444443322 2233334444444444444444444444444332 113333444444444444
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 84 ~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444321 1223334444444444444444444444433
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=2.7e-08 Score=87.69 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 011902 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLG----------GQVLEGFCLYEDIEKI 405 (475)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~ 405 (475)
..+...|.+.|++++|...|+++++. .|+ ...+..+..+|... |++++|...++++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 34455555566666666666655543 222 23344444444433 5666666666666654
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=1.8e-08 Score=90.43 Aligned_cols=127 Identities=11% Similarity=-0.015 Sum_probs=58.9
Q ss_pred HHHhcCChhhHHHHHHHhccC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---Cc--CHHHHHHHHH
Q 011902 173 LFCEKGDMIAADELMKGMGLI----DLYPD-IITYVSMIKGFCNAGRLEDACGLFKVMKRHGC---AA--NLVAYSALLD 242 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~--~~~~~~~ll~ 242 (475)
.|...|++++|.+.|++.... |-+++ ..+|+.+..+|.+.|++++|+..+++..+... .+ -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666655331 11111 34555566666666666666666655543210 00 0234445555
Q ss_pred HHHhc-CChHHHHHHHHHHHhcCCCCC-C--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 243 GICRL-GSMERALELLGEMEKEGGDCS-P--NVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 243 ~~~~~-g~~~~a~~~~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.|... |++++|+..|++..+...+.. + ...++..+...+.+.|++++|+..|++..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55553 555555555555443110000 0 012344444444555555555555544444
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=3e-08 Score=76.97 Aligned_cols=128 Identities=13% Similarity=0.225 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011902 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHHHHHH
Confidence 4455556666666666666666665543 2245555556666666666666666666665532 23444555555566
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011902 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 334 (475)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666555442 22344445555555555555555555555543
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=2.2e-08 Score=89.84 Aligned_cols=175 Identities=10% Similarity=-0.036 Sum_probs=99.6
Q ss_pred ChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCChHHH
Q 011902 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCAAN-LVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~g~~~~a 253 (475)
++++|.+.|++. ...|...|++++|...|++..+. |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367777776665 33566677888888777766542 21111 45677777777778888888
Q ss_pred HHHHHHHHhcCCCC-CC--cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 011902 254 LELLGEMEKEGGDC-SP--NVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAP-N----RVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 254 ~~~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~ 324 (475)
+..+++..+..... .+ ...+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77777766521000 00 133555666666664 77777776666654321000 0 2345555666666666666
Q ss_pred HHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 325 AYQLIDKVVAGGSVSSG------GCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
|...|++..+....... ..|..+..++...|++++|...|++..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666654332211 134455555666666666666666655
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.96 E-value=9.3e-07 Score=85.13 Aligned_cols=354 Identities=10% Similarity=-0.021 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCC-HHHHHHHHHhcccC-CC-CCCHhhHHHH
Q 011902 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL-ANEAMWVLRKMPEF-DL-RPDTIIYNNV 170 (475)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l 170 (475)
...|..++..+-. ++.+.+..+|+..... .|++..|...+....+.+. .+....+|+..... |. +.+...|...
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 3444444444433 5566666666666553 3566666666665555442 23344555554431 32 2244555555
Q ss_pred HHHHH----hcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHCCCCcC
Q 011902 171 IRLFC----EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC-------------NAGRLEDACGLFKVMKRHGCAAN 233 (475)
Q Consensus 171 i~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-------------~~g~~~~a~~~~~~m~~~g~~~~ 233 (475)
+..+. ..++.+.+.++|++........-...|......-. ..+.+..|..+++.+...--..+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 54432 23455666666666654211100111221111100 01122333444443332100013
Q ss_pred HHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011902 234 LVAYSALLDGICRLG--S-----MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
...|...+.--...+ - .+.+..+|+++... ++.+...|...+..+.+.|+.++|..++++.... |..
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~ 245 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDG 245 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCS
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCc
Confidence 345555444322211 1 34466778887764 2455667777777777888888888888888876 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011902 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------SVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 374 (475)
..+.. .|....+.++. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|++. +.. ..
T Consensus 246 ~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~ 317 (493)
T 2uy1_A 246 MFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GV 317 (493)
T ss_dssp SHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CC
T ss_pred HHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CC
Confidence 22211 22222111121 22222110 001 1234566666666677888888888888 321 12
Q ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011902 375 DGLACSVMIRE-LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 375 ~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
+...|...... +...++.+.|..+|+...+.. | .+...+...++...+.|+.+.|..+|+.+ ......|..
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~-~~~~~~~~yid~e~~~~~~~~aR~l~er~-----~k~~~lw~~ 389 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--P-DSTLLKEEFFLFLLRIGDEENARALFKRL-----EKTSRMWDS 389 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHS-----CCBHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHHHHHH
Confidence 33344322111 122346888888888888753 2 23455666777777788888888888886 235677777
Q ss_pred HHHHHHhcCCHhHHhhccc
Q 011902 454 IVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 454 l~~~~~~~g~~~~a~~l~~ 472 (475)
.+..-...|+.+.+..+++
T Consensus 390 ~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 7777777788887776543
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=1.1e-07 Score=80.61 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=73.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011902 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
+..+|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 6666777777777777777776643 3456666667777777777777777777766643 22455555555555444
Q ss_pred CC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011902 320 GN--LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 320 g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 378 (475)
|+ .+.+...++.... ..|....+.....++...|++++|...|++.++. .|+...
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 32 2334444444321 1122222333444455566777777777777643 565443
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=2.2e-07 Score=78.84 Aligned_cols=160 Identities=12% Similarity=0.014 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011902 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG----NLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
.+..+...|...+++++|+..|++..+.| +...+..|-..|.. + ++++|.+.|++..+.| +...+..|.
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33333344444444444444444443332 22333333333333 3 4444444444444433 223334444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011902 349 VELVR----TKRLKEAEKLFSKMLASGVK-PDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 349 ~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
..|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .++.++|...|++..+.+- +...+..|
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~~a~~~L 168 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSR----TGYAEYWA 168 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSC----TTHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC----CHHHHHHH
Confidence 44433 44555555555555443211 013344444444444 4455566666665555411 22344445
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 011902 420 LLGLCRK-N-----HSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 ~~~~~~~-g-----~~~~A~~~~~~m~~~~ 443 (475)
...|... | ++++|.+++++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4444432 2 5666666666666555
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=1.6e-07 Score=80.68 Aligned_cols=192 Identities=12% Similarity=-0.014 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH-HHHH
Q 011902 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA-PNR-VTIS 310 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~-~~~~ 310 (475)
+...+..+...+.+.|++++|...|+++.+.....+.....+..+..+|.+.|++++|+..|++..+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44556667778889999999999999988753211122356777888899999999999999998875322 111 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011902 311 TLIKGFCV------------------EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 311 ~li~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 372 (475)
.+..++.. .|+.++|...|+++++.... +...+.+.... + .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----V------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----H------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----H------HHHHHHH----
Confidence 44444443 34455555555555544321 11111111000 0 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 373 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.....+...+.+.|++++|...|+++.+.....+....++..+..++.+.|++++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112344567788999999999999888642211123568888889999999999999998888765
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=3e-07 Score=78.86 Aligned_cols=201 Identities=12% Similarity=-0.009 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHhccCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCH-HHHHHH
Q 011902 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-P-DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA-ANL-VAYSAL 240 (475)
Q Consensus 165 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~-~~~~~l 240 (475)
..+..+...+.+.|++++|.+.|+++...... | ....+..+..++.+.|++++|...|+++.+.... +.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34444555566666666666666666543211 1 1234555556666666666666666666654211 110 123333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc
Q 011902 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-VTISTLIKGFCVE 319 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~ 319 (475)
..++.+.|.. .+. .|..+...+...|++++|...|+++.+. .|+. .........
T Consensus 85 g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l---- 139 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----
T ss_pred HHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----
Confidence 3333322110 000 0111112223456777777777777664 2332 121111100
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 011902 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 320 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a 395 (475)
..+...+. .....+...|.+.|++++|...|+++++. .|+. ..+..+..++.+.|+.++|
T Consensus 140 ------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 140 ------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp ------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 00000000 01233556677778888888888877764 3432 4566677777788888888
Q ss_pred HHHHHHHHHcC
Q 011902 396 FCLYEDIEKIG 406 (475)
Q Consensus 396 ~~~~~~~~~~~ 406 (475)
.+.++.+...+
T Consensus 204 ~~~~~~l~~~~ 214 (225)
T 2yhc_A 204 EKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhC
Confidence 88888777764
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=3e-07 Score=78.01 Aligned_cols=176 Identities=11% Similarity=0.041 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC----CHHHHHH
Q 011902 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG----MMKEALG 292 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~ 292 (475)
+|.+.|++..+.| +...+..+...|...+++++|++.|++..+.+ +...+..+...|.. + ++++|++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 3556666666654 55666666666666777777777777776632 44555556556655 5 6777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHHHHHHH
Q 011902 293 ILDRMEALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSV-SSGGCYSSLVVELVR----TKRLKEAEKL 363 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~ 363 (475)
.|++..+.| +...+..|-..|.. .+++++|.+.|++..+.+.. .....+..|...|.. .+++++|.+.
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 777766654 44556666666655 66777777777777766532 014556667777776 6778888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 011902 364 FSKMLASGVKPDGLACSVMIRELCLG-G-----QVLEGFCLYEDIEKIG 406 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 406 (475)
|++..+. ..+...+..|-..|... | +.++|...|+...+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8887765 22334555555555443 2 7888888888888776
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=7e-08 Score=97.25 Aligned_cols=174 Identities=9% Similarity=-0.029 Sum_probs=124.1
Q ss_pred HhcCChhhHHHHHHHhc--------cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011902 175 CEKGDMIAADELMKGMG--------LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
...|++++|++.+++.. ... +.+...+..+...+...|++++|...|++..+.. +-+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888876 322 4456677777888888888888888888887754 2366777788888888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011902 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
.|++++|.+.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888887753 3456677778888888888888 88888877653 235667777888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011902 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
..|++..+.+.. +...+..+..++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 888877665432 24556666666655444
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=1.3e-08 Score=81.18 Aligned_cols=143 Identities=10% Similarity=-0.026 Sum_probs=101.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011902 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 394 (475)
.+...|++++|+..++........ +...+..+...|.+.|++++|++.|++.++.. +-+...|..+...+...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 344567777887777776553211 23456667788888888888888888887652 2346777778888888888888
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011902 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL-ARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
|...|++..+.. +.+..+|..+...|.+.|++++|.+. ++++++.. |-++.++......+...|+
T Consensus 84 A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELN---PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888888888765 23677788888888888888766554 57777776 5667777777777776664
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=1.7e-06 Score=77.14 Aligned_cols=221 Identities=10% Similarity=-0.010 Sum_probs=133.7
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC--CHHHHHHHHHhcccCCCCCCHhhHHHHHHHH----Hhc---
Q 011902 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR--LANEAMWVLRKMPEFDLRPDTIIYNNVIRLF----CEK--- 177 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 177 (475)
....++|+++.+.+...+ |-+...|+.--..+...+ ++++++..++.+...+. -+..+|+.--..+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcccc
Confidence 344456777777776655 445566666666666666 77788887777776542 3455555544444 444
Q ss_pred CChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC------
Q 011902 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE--DACGLFKVMKRHGCAANLVAYSALLDGICRLGS------ 249 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~------ 249 (475)
+++++++++++++.... +.+-.+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 56777777777776654 456666666666666666666 777777777766533 66666655555555555
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 011902 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE-ALGILDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
++++++.++.+.... +-|...|+..-..+.+.|+... +..+..++.+.+ -..+...+..+..+|.+.|+.++|.
T Consensus 202 ~~eEl~~~~~aI~~~---p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIVKC---PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 667777777666643 4566666666666666665333 333444443321 1234556666666666666666666
Q ss_pred HHHHHHHh
Q 011902 327 QLIDKVVA 334 (475)
Q Consensus 327 ~~~~~~~~ 334 (475)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.87 E-value=4.7e-08 Score=80.35 Aligned_cols=161 Identities=14% Similarity=0.020 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHH-HH
Q 011902 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG-FC 210 (475)
Q Consensus 132 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~ 210 (475)
+......+.+.|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3334445556666666666666655432 2244556666666666666666666666655432 233222211111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011902 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..++..+|...+++..+.. +-+...+..+...+...|++++|...|+++.+... -..+...+..+..++...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-GAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-ccChHHHHHHHHHHHHHhCCCCcH
Confidence 1112223445555544432 11345555555555555555555555555554310 001133444555555555555555
Q ss_pred HHHHHHH
Q 011902 291 LGILDRM 297 (475)
Q Consensus 291 ~~~~~~m 297 (475)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.87 E-value=3e-06 Score=75.59 Aligned_cols=231 Identities=10% Similarity=-0.010 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----Hhc---CC
Q 011902 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----CGK---GM 286 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 286 (475)
++|+++++.++..... +..+|+.--..+...| ++++++++++.+.... +.+..+|+.--..+ ... ++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHHHhccccCC
Confidence 4455555555544211 3334444444444444 5555555555555532 23333343322222 222 45
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC------HH
Q 011902 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR------LK 358 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~ 358 (475)
+++++++++.+.+.. +-+...|+.-.-.+.+.|.++ ++++.++.+.+.++. |..+|+.-...+...++ ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 555555555555442 224444444444444455555 566666666555443 34444444444444444 66
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 011902 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL-EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437 (475)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 437 (475)
++++.+++++... .-|...|+.+-..+.+.|+.. .+..+..++.+.+-..+.+...+..+...|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 6777777666543 234556666555555555533 34445555444320011255667777777777777777777777
Q ss_pred HHHHcCCCCChhhHHH
Q 011902 438 FMLKKRIWLQGPYVDK 453 (475)
Q Consensus 438 ~m~~~~~~~~~~~~~~ 453 (475)
.+.++-=|.....|+.
T Consensus 283 ~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHTTCGGGHHHHHH
T ss_pred HHHhccChHHHHHHHH
Confidence 7765321455555543
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.86 E-value=1.2e-07 Score=80.34 Aligned_cols=133 Identities=10% Similarity=-0.071 Sum_probs=68.1
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011902 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
+..++.+.|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +-+..++..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 5555666666666666666655543 3345556666666666666666666666666543 2245555555555544432
Q ss_pred --hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011902 250 --MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 250 --~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
.+.+...+..... ..|....+.....++...|++++|...|++..+. .|+.....
T Consensus 138 ~~~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 138 QEKKKLETDYKKLSS----PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHC---C----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 2334444444332 1122223333344445556666666666666543 45544333
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.86 E-value=8.2e-08 Score=85.80 Aligned_cols=166 Identities=11% Similarity=-0.025 Sum_probs=99.0
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHH-
Q 011902 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM- 205 (475)
Q Consensus 127 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l- 205 (475)
.+...+..+...+.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|.+.++++... .|+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 344555555566667777777777777766543 235566666777777777777777777766543 2333322222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011902 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 206 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
...+...++.++|...+++..+.. +.+...+..+...|...|++++|...|.++.+...+ ..+...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-AADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-GGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-cccchHHHHHHHHHHHcC
Confidence 223445556666666666666653 235666666777777777777777777776664210 012455666666666667
Q ss_pred CHHHHHHHHHHH
Q 011902 286 MMKEALGILDRM 297 (475)
Q Consensus 286 ~~~~a~~~~~~m 297 (475)
+.++|...+++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 666666666554
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=3.2e-07 Score=92.47 Aligned_cols=173 Identities=10% Similarity=-0.054 Sum_probs=142.6
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011902 210 CNAGRLEDACGLFKVMK--------RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 210 ~~~g~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|++.|+++.+.. +.+...|..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHH
Confidence 78899999999999998 432 3466788889999999999999999999999853 45778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011902 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 361 (475)
...|++++|++.|++..+.. +-+...+..+..++.+.|++++ ...|++..+.+.. +...|..+..++.+.|++++|.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998764 2356788889999999999999 9999999886643 5678899999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 011902 362 KLFSKMLASGVKPD-GLACSVMIRELCLGGQ 391 (475)
Q Consensus 362 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~ 391 (475)
+.|++..+. .|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999998854 566 4566667677666555
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=8e-08 Score=85.89 Aligned_cols=155 Identities=16% Similarity=0.114 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH
Q 011902 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI-REL 386 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~ 386 (475)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++.... .|+........ ..+
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHH
Confidence 3444444445555555555555555443322 3344445555555555555555555554432 23332221111 123
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHh
Q 011902 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW-LQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~ 465 (475)
...++.+.|...+++..+.. +.+...+..+...+...|++++|.+.++++++.... .+...+..++..+...|+.+
T Consensus 196 ~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 34444444555555555443 124445555555555555555555555555554411 11344455555555555544
Q ss_pred HHh
Q 011902 466 LIT 468 (475)
Q Consensus 466 ~a~ 468 (475)
.|.
T Consensus 273 ~a~ 275 (287)
T 3qou_A 273 ALA 275 (287)
T ss_dssp HHH
T ss_pred cHH
Confidence 443
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.83 E-value=2.2e-08 Score=79.95 Aligned_cols=119 Identities=8% Similarity=-0.021 Sum_probs=55.4
Q ss_pred hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011902 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 141 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 220 (475)
..|++++|+..++...... +-+...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+..++.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 3444555555555444321 1122333444555555555555555555554432 2344455555555555555555555
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 011902 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALEL-LGEMEK 262 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~ 262 (475)
.|++..+.. +-+..++..+...|.+.|++++|.+. +++..+
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555432 11344455555555555555443332 344443
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=7.3e-08 Score=87.12 Aligned_cols=176 Identities=11% Similarity=0.034 Sum_probs=99.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCC-CcHHHHHHHHHHHHhcCCHH
Q 011902 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG--DCS-PNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 212 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~-~~~~~~~~li~~~~~~g~~~ 288 (475)
.+++++|...|.+. ...|...|++++|...|.+..+... +-+ .-..+|+.+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 45566666555543 4567777888888888877655210 000 11345667777777778888
Q ss_pred HHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCCHH
Q 011902 289 EALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-----SGGCYSSLVVELVRTKRLK 358 (475)
Q Consensus 289 ~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~ 358 (475)
+|+..|++..+. |-.. -..++..+...|.. |++++|+..|++..+..... ...++..+...|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 888777765432 1110 12345556666666 77777777776665421100 1245566666666777777
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 359 EAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEGFCLYEDIE 403 (475)
Q Consensus 359 ~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 403 (475)
+|++.|++..+... .++ ...+..+...+...|++++|...|++..
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777766654211 111 1233344444555566777766666666
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=1.7e-07 Score=92.56 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=103.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011902 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
.|++++|.+.+++..+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888887643 3456778888888888888888888888887653 335677777888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 011902 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG---GQVLEGFCLYEDIE 403 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~ 403 (475)
+.+++..+.... +...+..+..+|.+.|++++|.+.|++..+.. ..+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888888776532 46677788888888888888888888887653 23456777777777777 88888888888888
Q ss_pred HcC
Q 011902 404 KIG 406 (475)
Q Consensus 404 ~~~ 406 (475)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 765
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=1.3e-07 Score=93.48 Aligned_cols=153 Identities=8% Similarity=-0.040 Sum_probs=92.2
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011902 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 187 (475)
+++++|.+.++...+.. +-+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56667777777665543 3456666667777777777777777777776643 235666777777777777777777777
Q ss_pred HHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcC
Q 011902 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---GSMERALELLGEMEKEG 264 (475)
Q Consensus 188 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 264 (475)
++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 7766543 3455667777777777777777777777776653 22556666777777777 77777777777776643
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=1.2e-07 Score=77.84 Aligned_cols=161 Identities=10% Similarity=0.013 Sum_probs=124.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH-HHh
Q 011902 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL-FCE 176 (475)
Q Consensus 98 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~ 176 (475)
......+...|+++.|...++...+.. +-+...+..+...+.+.|++++|+..|+...+.. |+...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 345566778899999999999877654 5577888889999999999999999999998754 344443332222 223
Q ss_pred cCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChHHHHH
Q 011902 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
.+....|.+.+++..... +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 334445788888887654 4467889999999999999999999999999875332 35688899999999999999999
Q ss_pred HHHHHHh
Q 011902 256 LLGEMEK 262 (475)
Q Consensus 256 ~~~~~~~ 262 (475)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=2.1e-07 Score=84.03 Aligned_cols=225 Identities=14% Similarity=0.035 Sum_probs=154.2
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh-cCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011902 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE-KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 142 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 220 (475)
.|++++|.+++++..+.. +. .+.+ .++++.|...|++. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456677777777665421 10 1222 46666666666654 557788999999999
Q ss_pred HHHHHHHCC----CC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCC-cHHHHHHHHHHHHhcCCHHHHHH
Q 011902 221 LFKVMKRHG----CA-ANLVAYSALLDGICRLGSMERALELLGEMEKEG--GDCSP-NVVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 221 ~~~~m~~~g----~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~-~~~~~~~li~~~~~~g~~~~a~~ 292 (475)
.|.+..+.. -. .-..+|+.+...|.+.|++++|+..|++..+.. .+-+. ...++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 998876531 11 114578888999999999999999999987631 11111 13567778888888 99999999
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 011902 293 ILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVSS-GGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 293 ~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~ 362 (475)
.|++..+. |... ...++..+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987653 1111 1456788889999999999999999998763 22111 2356667777888899999999
Q ss_pred HHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHH
Q 011902 363 LFSKMLASGVKPDG------LACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 363 ~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~ 397 (475)
.|++.. . .|+. .....++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999988 4 3421 2344455544 5677665555
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=4e-06 Score=75.06 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCch
Q 011902 344 YSSLVVELVRTKRLKEAEKLFSKMLA----S-GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDS 413 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~ 413 (475)
++.+...|...|++++|...|+++.+ . +..+. ..++..+...|...|++++|...+++..+. +..+ .-.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~-~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA-LIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT-THH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH-HHH
Confidence 44444444444555555444444442 1 11111 123444445555555555555555544432 1100 113
Q ss_pred hhHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 011902 414 DIHSVLLLGLCRKNH-SVEAAKLARFMLK 441 (475)
Q Consensus 414 ~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 441 (475)
.+|..+..++.+.|+ +++|.+.+++++.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 455555555655553 4566655555543
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=1.5e-06 Score=73.58 Aligned_cols=129 Identities=10% Similarity=-0.037 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011902 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
..+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...+++..+... .+...|..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 344455666667777777777776552 45666677777777777777777777777666542 2455666667777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 352 VRTKRLKEAEKLFSKMLASGVKP---------------DGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~~~~~p---------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
...|++++|.+.|++..+..... ....+..+..++...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777777766542111 0144555555666666666666666666654
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=3.4e-06 Score=75.50 Aligned_cols=163 Identities=10% Similarity=-0.022 Sum_probs=87.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 011902 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVV----TYTSVIQIFCGKGMMKEALGILDRMEALGCA-PN----RVTIST 311 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 311 (475)
+..+...|++++|.+++++..+.. ...|+.. .+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 455666667777777766666531 1122211 2223444555556667777666666653211 12 124566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 011902 312 LIKGFCVEGNLDEAYQLIDKVVA----G-GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKPD-GLACS 380 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~ 380 (475)
+...|...|++++|...++++.+ . +..+ ...+|..+...|.+.|++++|.+.+++..+. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666677777766666653 1 1111 1235566666666667777776666665531 21222 44555
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 011902 381 VMIRELCLGGQ-VLEGFCLYEDIEK 404 (475)
Q Consensus 381 ~ll~~~~~~g~-~~~a~~~~~~~~~ 404 (475)
.+..++...|+ .++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 56666666663 4666666655543
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=8.7e-06 Score=72.81 Aligned_cols=169 Identities=9% Similarity=-0.059 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--hh
Q 011902 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-----RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV---SS--GG 342 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~ 342 (475)
.+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456666777777777777766655422111 112333455667778888888888887753221 11 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCch
Q 011902 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS-GVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDS 413 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 413 (475)
+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|...+++..+... .+..-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999888731 01122 25778888889999999999999998775421 111125
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 011902 414 DIHSVLLLGLCRKNHSVEA-AKLARFMLK 441 (475)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 441 (475)
.+|..+..+|.+.|++++| ...+++.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7788899999999999999 777887764
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=1.9e-06 Score=72.93 Aligned_cols=128 Identities=14% Similarity=-0.007 Sum_probs=75.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011902 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 168 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
..+...+...|++++|.+.|++.. .|+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344455556666666666666553 3455566666666666666666666666665543 23455666666666666
Q ss_pred CChHHHHHHHHHHHhcCCC------------CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 248 GSMERALELLGEMEKEGGD------------CSP-NVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~------------~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
|++++|.+.|++..+...+ ..| ....+..+..++...|++++|...|+...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 6666666666666653210 001 1245666666677777777777777766654
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=2e-05 Score=71.12 Aligned_cols=178 Identities=11% Similarity=0.057 Sum_probs=127.9
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc-C-C
Q 011902 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK-G-D 179 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~ 179 (475)
.+...+..+.|+++.+.+...+ +-+..+|+.--..+...+ .+++++.+++.+..... -+..+|+.-..++.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCC
Confidence 3444556677888888888775 556667777666677777 58999999999887653 4777888877777766 6 8
Q ss_pred hhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--
Q 011902 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE--------DACGLFKVMKRHGCAANLVAYSALLDGICRLGS-- 249 (475)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-- 249 (475)
+++++++++++.... +.|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 889999999998765 556777776555554444444 888888888887543 77788877777777775
Q ss_pred -----hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011902 250 -----MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 250 -----~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
++++++.++++.... +-|...|+-+-..+.+.|+.
T Consensus 219 ~~~~~~~eELe~~~~aI~~~---P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI---PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCC
Confidence 678888888887753 45677777766666665543
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.65 E-value=1.2e-06 Score=67.28 Aligned_cols=110 Identities=7% Similarity=-0.120 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011902 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (475)
..+......|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|...+++..+.+ +.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---hhhhHHHHHHHH
Confidence 456667778888888888888888887653 3356777778888888888888888888888865 236778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011902 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
++...|++++|.+.|++.++.. |-+......+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 8888888888888888888876 455555554443
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=1.7e-06 Score=65.76 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011902 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (475)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHH
Confidence 3456666666777777777777777766542 2345566666777777777777777777777654 22556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011902 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 460 (475)
..+...|++++|.+.++++.+.. +.+...+..+...+.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 77777777777777777777665 4455555555555444
No 124
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=6.8e-05 Score=72.14 Aligned_cols=344 Identities=8% Similarity=-0.079 Sum_probs=209.1
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhc-CC-ccCHHhHHHHHHHHH----hcCC
Q 011902 72 SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN-PSIIIDVVEAYKEE-GC-VVSVKMMKVIFNLCE----KARL 144 (475)
Q Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~----~~~~ 144 (475)
++.+.+..+|...... .|+..+|...+....+.++ .+.+..+++..... |. +.+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6777788888877653 3588888888877766553 45566677776553 42 446777877777654 3467
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHHHH-------------hcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011902 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC-------------EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 145 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-------------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 211 (475)
.+.+..+|++........-...|......-. ..+.+..|..+++++...--..+...|...+.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 8889999999887321111122222211100 011223344444443321001133455555544322
Q ss_pred cC--C-----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011902 212 AG--R-----LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 212 ~g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
.+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... |.+...|. .|+..
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~----P~~~~l~~----~y~~~ 255 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM----SDGMFLSL----YYGLV 255 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHH----HHHHH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcHHHHH----HHHhh
Confidence 11 1 345778999988753 456888888888899999999999999999983 33333332 22222
Q ss_pred CCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHH
Q 011902 285 GMMKEALGILDRMEALG---------CAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS--SLVVE 350 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~---------~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~ 350 (475)
.+.++. ++.+.+.- ..+ ....|...+....+.++++.|..+|+.. ... ..+...|. +.+..
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 222222 22222110 001 1244666667776788899999999999 321 22333443 22332
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHH
Q 011902 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 351 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 430 (475)
.. .++.+.|..+|+...+.- .-+...+...++-....|+.+.|+.+|+.+.+ ....|...+..-...|+.+
T Consensus 331 ~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 331 YA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHH
T ss_pred HH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHH
Confidence 22 346999999999998752 12244455566666788999999999999721 5678888888778889999
Q ss_pred HHHHHHHHHHH
Q 011902 431 EAAKLARFMLK 441 (475)
Q Consensus 431 ~A~~~~~~m~~ 441 (475)
.+.++++++..
T Consensus 402 ~~r~v~~~~~~ 412 (493)
T 2uy1_A 402 LFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888874
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.62 E-value=1.6e-06 Score=66.49 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011902 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (475)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccCHHHHHHHH
Confidence 3456666677777778888888777776542 2345667777777777888888888888877754 23566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011902 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (475)
..+...|++++|.+.+++.++.. +.+...+..+..++.+.|+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888887776 45666777777777776654
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=1.6e-06 Score=66.93 Aligned_cols=118 Identities=8% Similarity=-0.132 Sum_probs=81.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011902 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
+...+..+...+...|++++|.+.|++..+.. ..+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCchHHHHHH
Confidence 34556667777777777777777777777542 2245667777777777788888888887777754 2356677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011902 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 420 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
..++.+.|++++|.+.+++.++.. +.+...+..+..++.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 777888888888888888877765 344555666666665554
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.60 E-value=4.8e-06 Score=74.53 Aligned_cols=169 Identities=9% Similarity=-0.066 Sum_probs=102.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC-----HhhHHHHHHHHHhcCChhhHHHHHHHhccCCC---CCC--h
Q 011902 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-----TIIYNNVIRLFCEKGDMIAADELMKGMGLIDL---YPD--I 199 (475)
Q Consensus 130 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~--~ 199 (475)
..+...+..+...|++++|.+.++...+.....+ ...+..+...+...|++++|.+.+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556677788888888888876655321111 12233455566677788888888877654221 111 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC-CCc
Q 011902 200 ITYVSMIKGFCNAGRLEDACGLFKVMKR---H-GCAA--NLVAYSALLDGICRLGSMERALELLGEMEKEG--GDC-SPN 270 (475)
Q Consensus 200 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~-~~~ 270 (475)
.+|+.+...|...|++++|...|++..+ . +-.+ ...++..+...|.+.|++++|+..+++..+.. .+. ..-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677777777888888888888877662 1 1111 12466777777788888888888777765421 000 011
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 011902 271 VVTYTSVIQIFCGKGMMKEA-LGILDRME 298 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 298 (475)
..+|..+..+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45666677777777777777 55555543
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.58 E-value=2.3e-06 Score=69.02 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011902 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|++++|.+.|++..... +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3334444444445555554444443322 2234444444444444455555554444444432 1234444444444555
Q ss_pred cCChHHHHHHHHHHHh
Q 011902 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|...+++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 5555555555544444
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.56 E-value=6.3e-05 Score=67.83 Aligned_cols=170 Identities=12% Similarity=-0.007 Sum_probs=83.3
Q ss_pred ChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-C-ChHHHHH
Q 011902 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL-G-SMERALE 255 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-g-~~~~a~~ 255 (475)
..++|+++++++...+ +-+..+|+.--..+...| +++++++.++.+.....+ +..+|+.-...+.+. + +++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3445666666655443 233444555444444455 366666666666655422 455555544444444 4 5666666
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 011902 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK--------EALGILDRMEALGCAPNRVTISTLIKGFCVEGN------ 321 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------ 321 (475)
+++.+.+.. +.+..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.....+.+.+.
T Consensus 147 ~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 147 YIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchH
Confidence 666666532 345555554433333333333 55555555555432 244445444444444443
Q ss_pred -HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011902 322 -LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 322 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
++++++.+++.+...+. |...|+-+-..+.+.|
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 44555555555544322 3444444444444333
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=2.4e-06 Score=64.88 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011902 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.|..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444444444444444443322 2233344444444444444444444444444332 123344444444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 011902 246 RLGSMERALELLGEMEK 262 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~ 262 (475)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444443
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=4.8e-06 Score=67.08 Aligned_cols=128 Identities=11% Similarity=0.025 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011902 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 387 (475)
.+..+...+...|++++|...|+...+.... +..++..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444555556666666666666666554322 35556666666777777777777777666542 224556666666777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 011902 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL--LLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 440 (475)
..|++++|...++++.+... .+...+..+ +..+...|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP---HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777776542 233444333 333556677777777766554
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=2.9e-06 Score=65.36 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=53.7
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011902 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...|..+...+.+.|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34445555555556666666666665555432 2344555555555555566666666665555542 224455555555
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 011902 243 GICRLGSMERALELLGEMEK 262 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+.+.|++++|.+.+++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 56666666666666655554
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=8.3e-06 Score=64.61 Aligned_cols=103 Identities=13% Similarity=-0.017 Sum_probs=85.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011902 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (475)
...+..+...+.+.|++++|.+.|++..+.. +-+...|..+..+|...|++++|...|++..+.. +.+...|..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHHH
Confidence 4567778888899999999999999998763 2357788888889999999999999999999875 23678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011902 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
.+|.+.|++++|.+.|++.++.. |+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999999876 4443
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=1.8e-06 Score=72.30 Aligned_cols=100 Identities=9% Similarity=-0.152 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCCch
Q 011902 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIG---FLSSVDS 413 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~ 413 (475)
++..+...+...|++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+.. ..+....
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3445555555566666666555554431 1011 12334445555666666666666666655321 0010112
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.++..+...+...|++++|.+.+++.++.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 33456666667777777777777666543
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.53 E-value=2.9e-06 Score=65.05 Aligned_cols=94 Identities=13% Similarity=0.042 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011902 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3334444444444444444444443322 2233444444444444444444444444444432 1133444444444444
Q ss_pred cCChHHHHHHHHHHHh
Q 011902 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=2.6e-06 Score=74.30 Aligned_cols=131 Identities=11% Similarity=-0.033 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 011902 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD--GLACSVMIRELC 387 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~ 387 (475)
..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...+..+-.++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 344556677788888888887776544 322244455556777888888888887544321 111 235566667777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..|++++|+..|++.......|............++.+.|+.++|..+|+++....
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 88888888888887774322132233455666677778888888888888888775
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=1.9e-06 Score=72.24 Aligned_cols=134 Identities=13% Similarity=0.007 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--
Q 011902 234 LVAYSALLDGICRLGSMERALELLGEMEKEG--GD-CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GCAP-- 304 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-- 304 (475)
..++..+...+...|++++|...+++..... .+ .+....++..+...+...|++++|...+++..+. +..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 3444444455555555555555554443310 00 0112233444444455555555555555443321 1011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
....+..+...+...|++++|...+++..+. +... ...++..+...+...|++++|.+.+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 1122334444444455555555554444321 1000 0122344444555555555555555444
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=3.5e-06 Score=64.59 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011902 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3333344444444444444444433321 2233333344444444444444444444443331 1123334444444444
Q ss_pred cCChHHHHHHHHHHHh
Q 011902 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|...+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444433
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=7.2e-07 Score=79.33 Aligned_cols=97 Identities=9% Similarity=-0.096 Sum_probs=50.1
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011902 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
...+..+...+.+.|++++|.+.|++..... +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344445555555555555555555554432 2244455555555555555555555555555442 2244455555555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 011902 244 ICRLGSMERALELLGEMEK 262 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~ 262 (475)
|...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=2e-06 Score=70.40 Aligned_cols=121 Identities=7% Similarity=0.037 Sum_probs=71.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 011902 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE-LCLGGQV--LE 394 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~--~~ 394 (475)
..|++++|...++...+... .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34556666666666555432 244556666666666677777776666666532 1234455555555 5566666 77
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
|...++++.+.. +.+...+..+...+...|++++|.+.++++++..
T Consensus 100 A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777766654 2245666666667777777777777777776654
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.47 E-value=1.6e-06 Score=68.83 Aligned_cols=98 Identities=15% Similarity=0.014 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011902 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...+..+...+.+.|++++|...|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.. |.+...|..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHHH
Confidence 3345555555556666666666666655543 2245555556666666666666666666665532 23445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 011902 279 QIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+|...|++++|...|++..+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 5666666666666666655553
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=3.1e-06 Score=73.78 Aligned_cols=127 Identities=8% Similarity=-0.040 Sum_probs=66.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 011902 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN--RVTISTLIKGF 316 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~ 316 (475)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG----SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 34455556666666666666555422 332233444445566666666666665333221 110 12444555566
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011902 317 CVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666666653322132 223444555566666666666666666654
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=2e-06 Score=68.21 Aligned_cols=99 Identities=11% Similarity=-0.085 Sum_probs=72.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011902 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (475)
...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+...|..+.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHHHH
Confidence 4456666777778888888888888777642 2356667777777788888888888888887764 23567777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 011902 421 LGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+|...|++++|.+.|++.++..
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 88888888888888888887764
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=1.5e-06 Score=71.20 Aligned_cols=120 Identities=7% Similarity=0.009 Sum_probs=69.4
Q ss_pred hcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCCh--HH
Q 011902 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-ICRLGSM--ER 252 (475)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~--~~ 252 (475)
..|++++|.+.+++..... +.+...|..+...+...|++++|...|++..+.. +.+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4556666666666655433 3455566666666666666666666666666543 2245555555555 5566666 66
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
|...++++.+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666542 234555666666666666666666666666554
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=1.1e-06 Score=78.09 Aligned_cols=95 Identities=13% Similarity=-0.023 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011902 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 200 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
..+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 80 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHHH
Confidence 344444455555555555555555554432 1244445555555555555555555555554421 223444444444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011902 280 IFCGKGMMKEALGILDRME 298 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~ 298 (475)
+|...|++++|...|++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555554443
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=5.8e-06 Score=75.53 Aligned_cols=146 Identities=11% Similarity=0.023 Sum_probs=88.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011902 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349 (475)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 349 (475)
+...+..+...+.+.|++++|+..|++..+.. |+...+ ..+.+..+- .. ...+|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~~-------~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-AL-------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-HH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-HH-------HHHHHHHHHH
Confidence 44556666666666777777777776665542 111000 000000000 00 1345667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011902 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 429 (475)
+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|+++.+.. +.+..++..+..++.+.|+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
Confidence 7777777888877777777643 2356677777777777888888888888777764 23566777777777777777
Q ss_pred HHH-HHHHHHHH
Q 011902 430 VEA-AKLARFML 440 (475)
Q Consensus 430 ~~A-~~~~~~m~ 440 (475)
++| .++++.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777 34555554
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=1.5e-05 Score=59.71 Aligned_cols=109 Identities=10% Similarity=-0.081 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011902 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (475)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cccHHHHHHHHH
Confidence 445666667777777777777777776542 2245666667777777778888887777777754 235667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011902 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
++...|++++|.+.+++.++.. +.+...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 7778888888888888777665 34444444433
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.38 E-value=2.6e-06 Score=67.46 Aligned_cols=93 Identities=14% Similarity=0.018 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011902 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|+..|++..... +.+...+..+..+|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 3334444444444444444444444332 1133444444444444444444444444444321 22333344444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 011902 282 CGKGMMKEALGILDRME 298 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~ 298 (475)
...|++++|...|+...
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444433
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.37 E-value=6.7e-06 Score=75.12 Aligned_cols=124 Identities=6% Similarity=-0.188 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011902 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD--------------GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
..+..+...|.+.|++++|...|++.++...... ...|..+..++.+.|++++|...++++.+..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3455555566666666666666666654321111 4678888899999999999999999999975
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhh
Q 011902 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 408 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
+.+..+|..+..+|...|++++|.+.|+++++.. +.+...+..+..++.+.|+.+++.+
T Consensus 227 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 227 --SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999987 6778889999999999999988743
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.36 E-value=8.8e-06 Score=63.85 Aligned_cols=98 Identities=8% Similarity=-0.142 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011902 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (475)
..+..+...+.+.|++++|...|++..+.+ +.+...|..+..++...|++++|...|++..+.. +.+...|..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHH
Confidence 344555666677777777777777776542 2245666666667777777777777777777754 235566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 011902 422 GLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+|...|++++|.+.|++.++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777777654
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.36 E-value=0.00054 Score=61.46 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC-HHHHHH
Q 011902 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM-MKEALG 292 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~ 292 (475)
++++.+++.+.....+ +..+|+.-...+.+.| ++++++.+++.+.+.. +.|..+|+.-.-++...|. ++++++
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 4444444444443211 4444444433444444 2455555555555432 3344444444444444444 345555
Q ss_pred HHHHHHHc
Q 011902 293 ILDRMEAL 300 (475)
Q Consensus 293 ~~~~m~~~ 300 (475)
.++.+.+.
T Consensus 167 ~~~~~I~~ 174 (331)
T 3dss_A 167 FTDSLITR 174 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2e-05 Score=61.92 Aligned_cols=112 Identities=7% Similarity=-0.160 Sum_probs=78.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011902 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|...+++..+.. +.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---GGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---ccCHHH
Confidence 3455666777777778888888888877754 455 4666677777778888888888888877754 235677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011902 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 416 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
|..+..++...|++++|.+.+++.++.. +.+...+..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 7777888888888888888888887765 4444444444333
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=1.2e-05 Score=62.43 Aligned_cols=99 Identities=9% Similarity=-0.082 Sum_probs=66.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011902 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
+...+..+...+...|++++|...|.+..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHHHH
Confidence 34556666667777777777777777766542 2245666666667777777777777777777654 2356667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 011902 420 LLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 420 ~~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
..++...|++++|.+.++++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777777777654
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=2.4e-05 Score=58.49 Aligned_cols=95 Identities=14% Similarity=-0.027 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011902 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444445555555555555555544332 2234444555555555555555555555554432 123444555555555
Q ss_pred hcCChHHHHHHHHHHHh
Q 011902 246 RLGSMERALELLGEMEK 262 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~ 262 (475)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555554
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.5e-05 Score=60.83 Aligned_cols=98 Identities=10% Similarity=-0.109 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011902 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (475)
..+..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHH
Confidence 345666667777788888888887777642 2346677777777778888888888888877764 235677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 011902 422 GLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++...|++++|.+.+++.++..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888777653
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=1.1e-05 Score=65.04 Aligned_cols=97 Identities=8% Similarity=-0.110 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011902 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 307 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 386 (475)
..+..+...+.+.|++++|...|++.++.... +...|..+..+|...|++++|+..|++.++.. .-+...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444555555555555555555555544322 34445555555555555555555555555432 11244445555555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 011902 387 CLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~ 405 (475)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.27 E-value=2.6e-05 Score=59.81 Aligned_cols=109 Identities=13% Similarity=0.026 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hhhHHH
Q 011902 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD----SDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ 418 (475)
.+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|++.+++..+.......+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 46667777888888888888888887652 2346677777888888888888888888877643111111 246777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011902 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 419 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+..++...|++++|++.|++.+... |++.+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHHHH
Confidence 7788888899999999998888754 566655443
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.27 E-value=0.0014 Score=58.84 Aligned_cols=199 Identities=10% Similarity=0.013 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHH
Q 011902 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG--MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN-LDEAY 326 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~ 326 (475)
+++++.+++.+.... +.+..+|+.-.-.+...+ .+++++.+++.+.+.. +-|...|+.-.-.+...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~---PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 678999999998854 567788887777777777 4899999999999875 3477777777777777887 68999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 011902 327 QLIDKVVAGGSVSSGGCYSSLVVELVRT--------------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--- 389 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--- 389 (475)
+.++.+++.++. |..+|+.....+... +.++++++.+.+..... +-|...|+-+-..+.+.
T Consensus 166 ~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 166 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCc
Confidence 999999987754 666677666665554 45788999999888753 33556666444444443
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011902 390 --------GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL---GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 390 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
+.++++++.++++.+.. | .+.-.+-.++. .....|..+++..++.++++.. |.....|..+...+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~--p-d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELE--P-ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKF 319 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhC--c-ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHHH
Confidence 45788999999999875 2 23333322221 1224678889999999999877 56666666655544
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=1.1e-05 Score=63.16 Aligned_cols=88 Identities=15% Similarity=-0.011 Sum_probs=35.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011902 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 206 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
...+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|...|++..... +.+...+..+..+|...|
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHcC
Confidence 333344444444444444443332 1133334444444444444444444444444321 122333333444444444
Q ss_pred CHHHHHHHHHHH
Q 011902 286 MMKEALGILDRM 297 (475)
Q Consensus 286 ~~~~a~~~~~~m 297 (475)
++++|...|+..
T Consensus 101 ~~~~A~~~~~~a 112 (142)
T 2xcb_A 101 DLDGAESGFYSA 112 (142)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.26 E-value=3e-05 Score=64.70 Aligned_cols=124 Identities=15% Similarity=0.016 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011902 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS---------------GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
...+..+...+...|++++|...|++..+...... ...|..+..+|...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455555666677777777777777665432211 134555555555556666666655555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 011902 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 371 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 433 (475)
. +.+...+..+..++...|++++|...|++..+.. +.+..++..+..++...++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2234455555555555555666655555555543 124444555555554444444444
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=1.7e-05 Score=58.78 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHHHH
Q 011902 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSVIQ 279 (475)
Q Consensus 202 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~ 279 (475)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI---EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccchHHHHHHHHH
Confidence 3334444444444444444444444332 1133344444444444444444444444444421 12 3344444444
Q ss_pred HHHhc-CCHHHHHHHHHHHHH
Q 011902 280 IFCGK-GMMKEALGILDRMEA 299 (475)
Q Consensus 280 ~~~~~-g~~~~a~~~~~~m~~ 299 (475)
++... |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 44444 444444444444443
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=1.6e-05 Score=60.74 Aligned_cols=115 Identities=12% Similarity=-0.015 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hhhHH
Q 011902 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD----SDIHS 417 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 417 (475)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.......+ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666667777777777777777776542 2345666667777777777777777777776653110011 56677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011902 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
.+...+...|++++|.+.++++++.. |+......+.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 77788888888888888888888764 45555555544443
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=4.8e-05 Score=72.07 Aligned_cols=198 Identities=7% Similarity=-0.011 Sum_probs=99.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc
Q 011902 207 KGFCNAGRLEDACGLFKVMKRHGCAANL----------------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN 270 (475)
Q Consensus 207 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (475)
+.+.+.|++++|.+.|..+.+....... ..+..+...|.+.|++++|.+.+..+......+ ++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~ 90 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AK 90 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cc
Confidence 4456667777777777777665322111 124556666666777777776666655421111 11
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--
Q 011902 271 VV----TYTSVIQIFCGKGMMKEALGILDRMEA----LGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAG--GS-- 337 (475)
Q Consensus 271 ~~----~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~-- 337 (475)
.. +.+.+-..+...|+.++|..+++.... .+..+. ..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 122222233344566666666655432 122222 234455566666666666666666655432 11
Q ss_pred CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 338 VS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVK-P-D--GLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 338 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~-p-~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.+ ...++..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|.+..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 1234555666666666666666666555431 111 1 1 123344444455556666666666665554
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=2e-05 Score=58.39 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=63.9
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHH
Q 011902 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA--NLVAYSAL 240 (475)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~l 240 (475)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556666666667777777777777665543 3345566666666777777777777777666652 22 45666666
Q ss_pred HHHHHhc-CChHHHHHHHHHHHhc
Q 011902 241 LDGICRL-GSMERALELLGEMEKE 263 (475)
Q Consensus 241 l~~~~~~-g~~~~a~~~~~~~~~~ 263 (475)
...+.+. |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6777777 7777777777776664
No 165
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.24 E-value=4.3e-05 Score=58.28 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011902 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHH
Confidence 3334444444455555555554444432 1234444444555555555555555555544432 22344444444445
Q ss_pred HhcCCHHHHHHHHHHHH
Q 011902 282 CGKGMMKEALGILDRME 298 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~ 298 (475)
...|++++|...|++..
T Consensus 83 ~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 83 IAVKEYASALETLDAAR 99 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 55555555555554443
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.20 E-value=3.9e-05 Score=64.00 Aligned_cols=147 Identities=12% Similarity=-0.060 Sum_probs=76.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------HHH
Q 011902 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN---------------RVT 308 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---------------~~~ 308 (475)
....|+++++.+.++.-.... ......+..+...+...|++++|+..|++..+...... ...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK---VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp --------CCCSGGGCCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 333455555555544222210 12344455566666667777777777766665321100 145
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 011902 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP-DGLACSVMIRELC 387 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 387 (475)
+..+..+|.+.|++++|...++...+... .+...+..+..+|...|++++|.+.|++..+. .| +...+..+...+.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHH
Confidence 56666666677777777777776666432 24555666666677777777777777666654 23 3444444544554
Q ss_pred hcCCHHHHH
Q 011902 388 LGGQVLEGF 396 (475)
Q Consensus 388 ~~g~~~~a~ 396 (475)
..++.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 445444444
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.19 E-value=5e-05 Score=58.12 Aligned_cols=97 Identities=8% Similarity=0.048 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHHHH
Q 011902 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYTSV 277 (475)
Q Consensus 202 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~l 277 (475)
+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|++.+++..+......++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444445555555555555555544432 1234445555555555555555555555544321000000 1233334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011902 278 IQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~ 299 (475)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4444445555555555544443
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=0.00014 Score=68.88 Aligned_cols=199 Identities=9% Similarity=-0.051 Sum_probs=142.7
Q ss_pred HHHHHhcCChhhHHHHHHHhccCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcC
Q 011902 171 IRLFCEKGDMIAADELMKGMGLIDLYPDI----------------ITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAAN 233 (475)
Q Consensus 171 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~ 233 (475)
...+.+.|++++|.+.|.++.+....... ..+..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999998775422111 236788999999999999999999876531 1122
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-
Q 011902 234 LV----AYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GCA- 303 (475)
Q Consensus 234 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~- 303 (475)
.. +.+.+-..+...|+.+.|.+++....... .....-..++..+...|...|++++|..++++.... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 22333344456789999999999886521 111223557788899999999999999999987643 211
Q ss_pred -C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 304 -P-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 304 -p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
+ ....+..++..|...|++++|..+++..... +..+. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2457788889999999999999999887642 21111 24566677777888999999999888764
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.18 E-value=2.8e-05 Score=62.57 Aligned_cols=99 Identities=12% Similarity=-0.010 Sum_probs=60.7
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011902 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...|..+...+.+.|++++|++.|++..... +.+...|..+..++.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666666666666666666665543 3355566666666666666666666666666553 224566666666
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 011902 243 GICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~ 263 (475)
+|.+.|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666666653
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=3.9e-05 Score=59.42 Aligned_cols=96 Identities=13% Similarity=-0.026 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011902 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~ 84 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLG 84 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHHHHH
Confidence 3334444444444444444444444444332 1133444444444444444444444444444422 22334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011902 279 QIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~ 298 (475)
.++...|++++|...|++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 44444444444444444443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=1.9e-05 Score=60.36 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHHHH
Q 011902 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC--AAN----LVAYSAL 240 (475)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~~l 240 (475)
|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444444455555555554444322 22334444444444445555555555544443211 011 3344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 011902 241 LDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...|.+.|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4555555555555555555444
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=7.5e-05 Score=57.04 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011902 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 345 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (475)
..+...+...|++++|.+.|++..+.. |+. ..+..+..++...|++++|...++++.+.....+....++..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345556667777777777777776542 222 35555666677777777777777777775421100145566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 011902 421 LGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.++.+.|++++|.+.++++++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777788888888877777764
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=7.7e-05 Score=58.44 Aligned_cols=97 Identities=9% Similarity=-0.056 Sum_probs=52.6
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011902 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...+..+...+...|++++|.+.|++.... .|+ ...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3445555555555666666666666655543 233 3445555555555566666665555555442 22445555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 011902 239 ALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+..+|...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555556666666666655554
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=2.5e-05 Score=62.22 Aligned_cols=100 Identities=13% Similarity=0.020 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCchh
Q 011902 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDSD 414 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~ 414 (475)
++..+...+...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|.+.+++..+... .+.....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4555666666666777666666665432 1001 133455566667777788888777777664310 1111245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
++..+...+...|++++|.+.+++.++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777778888888888888888877653
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=7.6e-06 Score=61.72 Aligned_cols=87 Identities=10% Similarity=-0.005 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHH
Q 011902 354 TKRLKEAEKLFSKMLASGV-KP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 431 (475)
.|++++|+..|++.++.+. .| +...+..+...|...|++++|...+++..+.. +.+..++..+..++.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHHH
Confidence 4566667777777665421 12 23455666666777777777777777777654 2356667777777777777777
Q ss_pred HHHHHHHHHHcC
Q 011902 432 AAKLARFMLKKR 443 (475)
Q Consensus 432 A~~~~~~m~~~~ 443 (475)
|.+.+++.+...
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 777777776654
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.08 E-value=4.2e-05 Score=58.02 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011902 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 423 (475)
+..+...+.+.|++++|...|++.++.. +-+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 5556677778888888888888888652 2256777777778888888888888888888865 23667788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011902 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+.|++++|.+.+++.++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888887654
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.07 E-value=4.9e-05 Score=72.60 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011902 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--------------GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
....+..+...+.+.|++++|...|++.++...... ..+|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355677888889999999999999999987543322 467888889999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH-HHHHHHHc
Q 011902 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK-LARFMLKK 442 (475)
Q Consensus 371 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~~ 442 (475)
. +.+...|..+..+|...|++++|...|+++.+.. +.+..++..+..++.+.++.+++.+ .++.|..+
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 3357788888889999999999999999998864 2366788888888888888887764 45665544
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=4.1e-05 Score=61.46 Aligned_cols=97 Identities=14% Similarity=-0.001 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 344 YSSLVVELVRTKRLKEAEKLFSKMLAS--------G---------VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~--------~---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
+......+.+.|++++|+..|.+.++. . -+.+...|..+..+|.+.|++++|...+++..+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444455555566666666655555432 0 01123456667777788888888888888888764
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 407 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+.+...|..+..+|...|++++|.+.|++.+...
T Consensus 94 ---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ---ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 2367778888888888888888888888888775
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=5.5e-05 Score=69.90 Aligned_cols=90 Identities=4% Similarity=-0.215 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011902 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 376 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
...|..+..+|.+.|++++|...++++.+.. +.+..+|..+..+|...|++++|++.++++++.. +.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3556666777777788888888887777754 2356777777778888888888888888877775 45666777777
Q ss_pred HHHHhcCCHhHHhh
Q 011902 456 EHLKKSGDEELITN 469 (475)
Q Consensus 456 ~~~~~~g~~~~a~~ 469 (475)
.++...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766654
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.02 E-value=4.7e-05 Score=57.73 Aligned_cols=91 Identities=9% Similarity=-0.111 Sum_probs=40.0
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011902 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
+...+.+.|++++|...|++..... +.+...|..+..++...|++++|+..|++..+... -+...+..+..+|.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3334444444444444444444322 22344444444444444444444444444444321 133344444444444444
Q ss_pred hHHHHHHHHHHHh
Q 011902 250 MERALELLGEMEK 262 (475)
Q Consensus 250 ~~~a~~~~~~~~~ 262 (475)
+++|...+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=2.8e-05 Score=74.62 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=39.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011902 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 395 (475)
+.+.|++++|.+.+++..+.... +...|..+..+|.+.|++++|++.+++..+.. +-+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 33444555555555544443211 23444444444445555555555554444431 11233444444444444444444
Q ss_pred HHHHHHHHHc
Q 011902 396 FCLYEDIEKI 405 (475)
Q Consensus 396 ~~~~~~~~~~ 405 (475)
.+.+++..+.
T Consensus 94 ~~~~~~al~~ 103 (477)
T 1wao_1 94 LRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=6.2e-05 Score=59.85 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CCcHH
Q 011902 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCA-AN----LVAYSALLDGICRLGSMERALELLGEMEKEGGDC---SPNVV 272 (475)
Q Consensus 201 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~ 272 (475)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+..... .....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555554432100 01 1345555666666666666666666554421000 00123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 273 TYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.98 E-value=0.00029 Score=53.66 Aligned_cols=91 Identities=11% Similarity=-0.024 Sum_probs=43.5
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHH
Q 011902 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDI---ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN---LVAYSALLDG 243 (475)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~ 243 (475)
+...+...|++++|.+.|++..... +.+. ..+..+..++...|++++|...|++..+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3344445555555555555544322 1111 24444445555555555555555555443211 1 3444445555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 011902 244 ICRLGSMERALELLGEMEK 262 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~ 262 (475)
+.+.|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.94 E-value=2.7e-05 Score=58.67 Aligned_cols=85 Identities=14% Similarity=-0.007 Sum_probs=44.5
Q ss_pred cCChhhHHHHHHHhccCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011902 177 KGDMIAADELMKGMGLID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
.|++++|+..|++....+ -+.+...+..+..++...|++++|...|++..+... -+...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 355556666666555432 122334455555556666666666666666555432 24555555566666666666666
Q ss_pred HHHHHHHh
Q 011902 255 ELLGEMEK 262 (475)
Q Consensus 255 ~~~~~~~~ 262 (475)
..+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.89 E-value=3.5e-05 Score=73.96 Aligned_cols=119 Identities=11% Similarity=0.002 Sum_probs=73.8
Q ss_pred HHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChH
Q 011902 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
..+.+.|++++|.+.+++..+.. +.+...|..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34456677777777777666543 3346667777777777777777777777777653 235666777777777777777
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 011902 252 RALELLGEMEKEGGDCSPNVVTYTSVIQI--FCGKGMMKEALGILD 295 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 295 (475)
+|++.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK---PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS---TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777776642 2233344444444 666677777777766
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.88 E-value=0.00021 Score=68.18 Aligned_cols=150 Identities=15% Similarity=0.032 Sum_probs=111.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHH
Q 011902 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN--------------RVTISTLIK 314 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~ 314 (475)
++++|...|+...+.. +.....|..+...+.+.|++++|+..|++..+...... ...|..+..
T Consensus 249 ~~~~A~~~~~~~~~~~---~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK---LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEECCCCGGGSCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4455555554433321 12456788888999999999999999999887532211 578888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 011902 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVL 393 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~ 393 (475)
+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|++.++. .|+ ...+..+..++...++.+
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987643 6788999999999999999999999999865 454 456777777777888877
Q ss_pred HHH-HHHHHHHH
Q 011902 394 EGF-CLYEDIEK 404 (475)
Q Consensus 394 ~a~-~~~~~~~~ 404 (475)
++. ..+..|..
T Consensus 403 ~a~~~~~~~~f~ 414 (457)
T 1kt0_A 403 ERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 665 34454444
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.85 E-value=7.8e-05 Score=71.21 Aligned_cols=127 Identities=13% Similarity=0.015 Sum_probs=84.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 011902 315 GFCVEGNLDEAYQLIDKVVAG---GSVS----SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-----GV-KPD-GLACS 380 (475)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~ 380 (475)
.+...|++++|+.++++.++. -+.+ ...+++.|...|...|++++|..++++.++. |- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345677777777777766542 1111 2356777888888888888888877776531 21 222 35677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 381 VMIRELCLGGQVLEGFCLYEDIEK-----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 381 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.|...|...|++++|..++++..+ .|...+....+.+.+..++...+++++|..+++.+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888887664 2433322344556666777778888888888888765
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=0.00016 Score=66.80 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011902 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
..+|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|++.|++..+.. +.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3455555555555566666666665555532 2344555555555556666666666665555432 12344444444
Q ss_pred HHHHhcCCHHHHH
Q 011902 314 KGFCVEGNLDEAY 326 (475)
Q Consensus 314 ~~~~~~g~~~~a~ 326 (475)
.++...++.+++.
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444455444443
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.84 E-value=0.00032 Score=55.11 Aligned_cols=96 Identities=9% Similarity=-0.037 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 011902 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-------------GLACSVMIRELCLGGQVLEGFCLYEDIEKI----- 405 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 405 (475)
+......+.+.|++++|++.|++.++. .|+ ...|..+-.++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344455566667777777777766643 222 226777777888888888888888888875
Q ss_pred CCCCCCchhhH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 406 GFLSSVDSDIH----SVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 406 ~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+. +.+...| .....++...|++++|++.|++.++.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 112 3467788 88889999999999999999998864
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.82 E-value=0.0012 Score=64.44 Aligned_cols=139 Identities=9% Similarity=-0.026 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 011902 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK--RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG-QVLEGFCL 398 (475)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~ 398 (475)
++++.+.++.+.+.+.+ +..+|+.-.-.+.+.| +++++++.++++.+.. .-+...|+.-...+.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 67777777777765544 4555666566666667 5677777777777654 225566665555556666 77777777
Q ss_pred HHHHHHcCCCCCCchhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011902 399 YEDIEKIGFLSSVDSDIHSVLLLGLCRK--------------NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (475)
++++.+... .+..+|+.....+.+. +.++++++.+++++... |-+...|......+.+.|+.
T Consensus 167 ~~~~I~~~p---~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 167 TDSLITRNF---SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHTTTTTTC---CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHCC---CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 777777552 3667777766665552 56789999999999887 77888888888888887775
Q ss_pred hH
Q 011902 465 EL 466 (475)
Q Consensus 465 ~~ 466 (475)
++
T Consensus 243 ~~ 244 (567)
T 1dce_A 243 DV 244 (567)
T ss_dssp SC
T ss_pred cc
Confidence 55
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00014 Score=53.77 Aligned_cols=91 Identities=10% Similarity=-0.047 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hh
Q 011902 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ------GP 449 (475)
Q Consensus 376 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~ 449 (475)
...+..+...+...|++++|.+.+++..+.. +.+...|..+..++.+.|++++|++.+++.++.. +.+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHH
Confidence 4456666667777777888887777777754 2356777777777778888888888888877665 233 44
Q ss_pred hHHHHHHHHHhcCCHhHHhhc
Q 011902 450 YVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~l 470 (475)
.+..+..++...|+.+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhH
Confidence 556666677777766665543
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.79 E-value=0.00019 Score=68.61 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=42.3
Q ss_pred HHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHH
Q 011902 244 ICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----G-CAP-NRVTIST 311 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~ 311 (475)
+...|++++|+.++++..+. |...+....+++.+..+|...|++++|..++++..+. | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44556666666666555442 1111112344555566666666666666655554321 1 011 1233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011902 312 LIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~ 332 (475)
|...|...|++++|..++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 455555555555555554443
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.78 E-value=0.00038 Score=55.65 Aligned_cols=62 Identities=18% Similarity=0.093 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011902 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 200 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
..|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++...
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 455556666666666666666666666543 22455666666666666666666666666655
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.70 E-value=0.0015 Score=50.49 Aligned_cols=110 Identities=14% Similarity=0.012 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 011902 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGF 396 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 396 (475)
++++|.+.|++..+.|.. ... |...|...+.+++|.+.|++..+.| +...+..|-..|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM---FGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT---THH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH---hhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 455666666666665522 112 4444555556666666666666553 34455555555555 56777777
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 011902 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 443 (475)
+.|++..+.| +...+..|...|.. .+++++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN-----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777777654 44556666666666 667777777777777665
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.69 E-value=0.0012 Score=51.11 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=6.1
Q ss_pred CChHHHHHHHHHHHh
Q 011902 248 GSMERALELLGEMEK 262 (475)
Q Consensus 248 g~~~~a~~~~~~~~~ 262 (475)
+++++|.++|++..+
T Consensus 75 ~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 75 KDLRKAAQYYSKACG 89 (138)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHc
Confidence 344444444444333
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=0.00012 Score=66.84 Aligned_cols=131 Identities=17% Similarity=0.044 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------------------hHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG------------------CYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
...+..+...+.+.|++++|...|++..... |+.. +|..+..+|.+.|++++|+..+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556677778888999999999999987754 3222 4555566666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 011902 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG-LCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 368 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~ 442 (475)
++.. ..+...+..+..+|...|++++|...|+++.+.. | .+..++..+... ....+..+++.++|++|...
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p-~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--P-DDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 5532 2244555666666666666666666666655432 1 133444444333 22334555555566665544
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.66 E-value=0.0025 Score=62.28 Aligned_cols=174 Identities=6% Similarity=-0.042 Sum_probs=118.8
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCC----------HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh
Q 011902 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL----------ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 176 (475)
....++|++.++.+...+ +-+..+|+.--.++...++ ++++++.++.+.+.. +-+..+|+.-.-++.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344567777777777765 4455666655555555555 788888888887755 3467777777777777
Q ss_pred cC--ChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc------
Q 011902 177 KG--DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL------ 247 (475)
Q Consensus 177 ~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~------ 247 (475)
.| +++++++.++++.+.. +.+..+|+.-...+.+.| ..+++++.++++.+.... |...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 78 6688888888887765 557777777777777777 778888888888776533 666776666555542
Q ss_pred --------CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011902 248 --------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 248 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
+.++++++.+++..... +-+...|.-.-..+.+.++.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~---P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC---SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHhcCCCc
Confidence 45677888887777643 44666777666666665553
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.64 E-value=0.00027 Score=64.43 Aligned_cols=60 Identities=12% Similarity=-0.008 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
.|..+..+|.+.|++++|...++..++.+. .+...|..+..+|...|++++|.+.|++..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555555555554332 134455555555555555555555555554
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00075 Score=47.49 Aligned_cols=81 Identities=11% Similarity=-0.009 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011902 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 377 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
..+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++.++.. +.+...+..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 345555556666666666666666666653 1245566666666777777777777777766655 444555555555
Q ss_pred HHHhc
Q 011902 457 HLKKS 461 (475)
Q Consensus 457 ~~~~~ 461 (475)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.62 E-value=0.0013 Score=51.69 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 236 AYSALLDGICRLGSMERALELLGEMEKE-------GGDCSPNVVTY----TSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.|..+..++.+.|++++|+..+++..+. . +.+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~---pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN---QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT---STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC---CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666666666666666666666653 2 2234455 5566666666666666666666543
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.45 E-value=0.0013 Score=48.81 Aligned_cols=99 Identities=13% Similarity=-0.020 Sum_probs=52.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 360 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 439 (475)
|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..+|...|++++|.+.+++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555432 1234555555566666666666666666666543 124556666666666666666666666666
Q ss_pred HHcCC-CCChhhHHHHHHHHHhcC
Q 011902 440 LKKRI-WLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 440 ~~~~~-~~~~~~~~~l~~~~~~~g 462 (475)
++... ..+......+...+.+.|
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhc
Confidence 55421 123333444444444333
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.36 E-value=0.0016 Score=48.33 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=35.4
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011902 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 183 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
|.+.|++..... +.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444443322 2234444444445555555555555555444432 12344444445555555555555555554443
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.35 E-value=0.00077 Score=52.86 Aligned_cols=102 Identities=12% Similarity=-0.034 Sum_probs=63.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011902 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ----------VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 422 (475)
+.+++++|.+.++...+.. +-+...|..+-.++...++ +++|+..|++..+.. +.+..+|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---P~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC---cCcHHHHHHHHHH
Confidence 4455666666666666542 2245555555555555544 457777777777764 2356777777777
Q ss_pred HHhcC-----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011902 423 LCRKN-----------HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 423 ~~~~g-----------~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 460 (475)
|...| ++++|++.|+++++.. |+...|...+....+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHT
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHh
Confidence 77653 7888888888888775 555566555554443
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00066 Score=49.92 Aligned_cols=59 Identities=8% Similarity=-0.004 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226 (475)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 226 (475)
+..+...+...|++++|.+.|++..... +.+...+..+..++...|++++|...+++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333334444444444444444433322 2233333334444444444444444444433
No 205
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.34 E-value=0.025 Score=58.06 Aligned_cols=193 Identities=16% Similarity=0.056 Sum_probs=96.9
Q ss_pred HHhcCCHHHHHH-HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011902 209 FCNAGRLEDACG-LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 209 ~~~~g~~~~a~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
....+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.... -.......|++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------------~f~~~l~~~~~ 668 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ--------------KFELALKVGQL 668 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH--------------HHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcch--------------heehhhhcCCH
Confidence 344566666655 33111 1022225566666666776666654421111 12223455667
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 367 (475)
++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...|...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 7666664332 2455666666666666776666666665532 444444455555555444333332
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011902 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 368 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
. ..|+++.|...+... | -+...+..|.+.+++++|..+-+. . .|.
T Consensus 734 ~-------------------~~~~~~~A~~~~~~~---g--------~~~~a~~~~~~~~~~~~A~~lA~~---~--~~~ 778 (814)
T 3mkq_A 734 E-------------------TTGKFNLAFNAYWIA---G--------DIQGAKDLLIKSQRFSEAAFLGST---Y--GLG 778 (814)
T ss_dssp H-------------------HTTCHHHHHHHHHHH---T--------CHHHHHHHHHHTTCHHHHHHHHHH---T--TCC
T ss_pred H-------------------HcCchHHHHHHHHHc---C--------CHHHHHHHHHHcCChHHHHHHHHH---h--CCC
Confidence 2 233333333332211 1 023334445556666666665443 2 344
Q ss_pred h----hhHHHHHHHHHhcCCHhHHhhcc
Q 011902 448 G----PYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 448 ~----~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
. .........+...|+.+.|..+.
T Consensus 779 ~~~i~~~~~~~~~~L~~~~~~~~a~~l~ 806 (814)
T 3mkq_A 779 DNEVNDIVTKWKENLILNGKNTVSERVC 806 (814)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHTTBC
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHhhC
Confidence 4 55666666777777766666554
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.29 E-value=0.0034 Score=43.97 Aligned_cols=60 Identities=13% Similarity=0.254 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011902 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 202 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344444444444444444444444332 11334444444444444555555554444444
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.26 E-value=0.0017 Score=46.97 Aligned_cols=85 Identities=9% Similarity=-0.056 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHH
Q 011902 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDK 453 (475)
Q Consensus 375 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ 453 (475)
+...+..+...+...|++++|...|+++.+... .+..+|..+..+|...|++++|.+.+++.++... .++......
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP---DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 345556666666667777777777777666541 2455666677777777777777777776665421 244444445
Q ss_pred HHHHHHhcC
Q 011902 454 IVEHLKKSG 462 (475)
Q Consensus 454 l~~~~~~~g 462 (475)
+...+.+.+
T Consensus 83 l~~~l~~~~ 91 (100)
T 3ma5_A 83 LQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcc
Confidence 554444443
No 208
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.10 E-value=0.013 Score=60.32 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=76.4
Q ss_pred HHHHhcCCHHHHHH-HHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011902 137 NLCEKARLANEAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 137 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 215 (475)
......+++++|.+ ++..+. +......++..+.+.|..+.|.++.++- ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCH
Confidence 34445677777766 553332 1222366677777777777777665311 1113344567788
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011902 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
++|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.. |..+...+...|+.+...++-+
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHH
Confidence 8887775432 2567788888888888888888888876643 3344455555666665554444
Q ss_pred HHHH
Q 011902 296 RMEA 299 (475)
Q Consensus 296 ~m~~ 299 (475)
....
T Consensus 732 ~a~~ 735 (814)
T 3mkq_A 732 DAET 735 (814)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.00 E-value=0.0011 Score=51.91 Aligned_cols=84 Identities=11% Similarity=-0.042 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh----------hhHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 011902 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM----------IAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 143 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 212 (475)
+.+++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++..+.+ +.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 34555555555555433 23455555555555555443 35555555554433 22344455555555444
Q ss_pred C-----------CHHHHHHHHHHHHHC
Q 011902 213 G-----------RLEDACGLFKVMKRH 228 (475)
Q Consensus 213 g-----------~~~~a~~~~~~m~~~ 228 (475)
| ++++|.+.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 2 455555555555443
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.94 E-value=0.006 Score=43.93 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
..+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.+++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444444422 122334444444444444444444444433
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.92 E-value=0.0061 Score=57.16 Aligned_cols=88 Identities=8% Similarity=-0.164 Sum_probs=60.6
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCchhhHHHHHH
Q 011902 354 TKRLKEAEKLFSKMLAS---GVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKI-----GFLSSVDSDIHSVLLL 421 (475)
Q Consensus 354 ~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~l~~ 421 (475)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++..+. |...+....+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777766541 12222 356777777888888888888888776642 4333334566888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 011902 422 GLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~ 441 (475)
.|...|++++|..+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888888764
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.87 E-value=0.0048 Score=57.92 Aligned_cols=94 Identities=10% Similarity=-0.078 Sum_probs=67.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCchhh
Q 011902 348 VVELVRTKRLKEAEKLFSKMLASG---VKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKI-----GFLSSVDSDI 415 (475)
Q Consensus 348 i~~~~~~g~~~~a~~~~~~m~~~~---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 415 (475)
+..+.+.|++++|+.++++.++.. +.|+ ..+++.|..+|...|++++|..+++++.+. |...+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888888776531 2222 356777888888888888888888877642 3332234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 416 HSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 416 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 441 (475)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888889999999999998888774
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.63 E-value=0.0084 Score=56.21 Aligned_cols=61 Identities=8% Similarity=-0.115 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 272 VTYTSVIQIFCGKGMMKEALGILDRMEAL-----G-CAP-NRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 332 (475)
.+++.+..+|...|++++|..++++..+. | -.| ...+++.|...|...|++++|..++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34444444455555555544444443211 1 011 1233444555555555555555555444
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.59 E-value=0.025 Score=40.25 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=27.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 349 VELVRTKRLKEAEKLFSKMLASGVKPDGL-ACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 349 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
..+...|++++|.+.|++..+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555555554431 11233 4444444555555555555555555544
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.58 E-value=0.14 Score=38.20 Aligned_cols=137 Identities=13% Similarity=0.046 Sum_probs=69.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011902 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 326 (475)
.|..++..++..+.... .+..-||.+|.-....-+-+-..++++..-+. .|. ..+|++....
T Consensus 20 dG~v~qGveii~k~~~s-----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS-----STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp TTCHHHHHHHHHHHHHH-----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred hhhHHHHHHHHHHHcCC-----CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 45556666666655552 23444444444444444444444444443321 111 1223333333
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
..+-.+- .+....+..+..+...|+-+.-.+++..+.. +.+|++...-.+..||.+.|+..+|.+++.++-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3222221 1233355556666666666666666666433 235566666666666666676666666666666666
Q ss_pred C
Q 011902 407 F 407 (475)
Q Consensus 407 ~ 407 (475)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.52 E-value=0.052 Score=49.00 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=21.1
Q ss_pred CccCHHhHHHHHHHHH--hc---CCHHHHHHHHHhcccC
Q 011902 125 CVVSVKMMKVIFNLCE--KA---RLANEAMWVLRKMPEF 158 (475)
Q Consensus 125 ~~~~~~~~~~ll~~~~--~~---~~~~~A~~~~~~~~~~ 158 (475)
.+.+...|...+++.. .. .+..+|..+|++..+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l 228 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS 228 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 3566777777776432 22 2346778888877764
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.52 E-value=0.042 Score=38.81 Aligned_cols=67 Identities=12% Similarity=-0.037 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 374 PDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 374 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+...+..+..++...++ .++|..++++..+.. +.+......+...+.+.|++++|+..|+++++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455666666666654443 688888888888865 3467778888888888888888888888888776
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.48 E-value=0.015 Score=54.54 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 272 VTYTSVIQIFCGKGMMKEALGILDRMEAL-----G-CAP-NRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 332 (475)
.+++.+..+|...|++++|+.++++..+. | ..| ...+++.|...|...|++++|..++++.
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444444444444444444444433211 1 111 1233444444555555555555554444
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.45 E-value=0.062 Score=48.47 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011902 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 378 (475)
+...|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 44444444444444455555555555555543 34444444444455555555555555555433 344443
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.26 Score=39.16 Aligned_cols=102 Identities=12% Similarity=0.169 Sum_probs=52.3
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011902 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 216 (475)
....+.|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445556666666665544 2455566666666666666666666665542 233444444455555
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011902 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGE 259 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (475)
+..++-+.....| -++.....+.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544444433333 122233334445666666655543
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.34 Score=38.48 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=20.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011902 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 211 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
..|+++.|.++.+++ -+...|..|.....+.|+++-|.+.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 444455544444433 13444555555555555555555444443
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.11 E-value=0.014 Score=41.57 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=10.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 201 TYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 201 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 227 (475)
.+..+..++...|++++|.+.|++..+
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333333344444444444444444333
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.04 E-value=0.07 Score=41.30 Aligned_cols=85 Identities=22% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 011902 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 433 (475)
...+.+-|.+..+.|. ++..+...+..++++.+ +++++..+++++.+.. .|..+...+-.+..++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555665555543 56666666666777766 5557777777777754 11123455566666777888888888
Q ss_pred HHHHHHHHcC
Q 011902 434 KLARFMLKKR 443 (475)
Q Consensus 434 ~~~~~m~~~~ 443 (475)
++++.+++..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8888887775
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.87 E-value=0.17 Score=35.53 Aligned_cols=47 Identities=11% Similarity=-0.027 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011902 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.++|..++++..+... -++.....+...+.+.|++++|...|+.+.+
T Consensus 25 ~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444444321 1334444444444444444444444444444
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.41 E-value=0.24 Score=35.64 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 413 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..++..+..++.+.|++++|..+++++++..
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3445555555555555555555555555443
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.38 E-value=0.59 Score=34.98 Aligned_cols=140 Identities=9% Similarity=0.106 Sum_probs=78.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 011902 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 210 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (475)
.-.|..++..++..+..+. .+..-||.+|.-....-+-+-..++++.+-+- -|.. ..|+...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-----FDis----------~C~NlKr 79 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-----FDLD----------KCQNLKS 79 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-----SCGG----------GCSCTHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-----cCcH----------hhhcHHH
Confidence 3457777777777777664 25666666666666666666666666666542 1211 1222222
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 369 (475)
....+-.+- .+...+...+..+...|+-|.-.+++.++.. +..|++...-.+..+|.+.|+..+|.+++.+.-+
T Consensus 80 Vi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 80 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 222222211 1334445555666666666666666666433 2344555566666677777777777777776666
Q ss_pred CCCC
Q 011902 370 SGVK 373 (475)
Q Consensus 370 ~~~~ 373 (475)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 6653
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.26 E-value=0.14 Score=39.54 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 011902 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEG---NLDEAYQLIDKVVAGGSVS--SGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 363 (475)
.+.+-|.+..+.|. ++..+...+.-++++.+ +++++..++++..+.+ .| +...+..|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444433 45555555555666655 4556666666666644 12 234444455566677777777777
Q ss_pred HHHHHHCCCCCC
Q 011902 364 FSKMLASGVKPD 375 (475)
Q Consensus 364 ~~~m~~~~~~p~ 375 (475)
++.+++. .|+
T Consensus 94 ~~~lL~i--eP~ 103 (152)
T 1pc2_A 94 VRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHH--CTT
T ss_pred HHHHHhc--CCC
Confidence 7776654 453
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.95 E-value=0.32 Score=34.92 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011902 202 YVSMIKGFCNAGRLEDACGLFKVMKRHG------CAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 202 ~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+..+...+.+.|+++.|...|+...+.- -.+....+..+..+|.+.|+++.|...++++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444444444444444433310 112334444555555555555555555555544
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.91 E-value=7.4e-05 Score=68.77 Aligned_cols=214 Identities=11% Similarity=0.078 Sum_probs=113.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHH
Q 011902 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 207 (475)
.+..|..+..+..+.+++.+|++-| .+. -|+..|..+|.+..+.|.+++-.+++...++.. .+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3455666677776666666665443 221 356667777777777777777777776555442 23333456777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------------------CCCCC
Q 011902 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG------------------GDCSP 269 (475)
Q Consensus 208 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------------------~~~~~ 269 (475)
+|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+..-. ..-.-
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777777555433321 2455555566677777777777777666554311 00012
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011902 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349 (475)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 349 (475)
++.||..+-.+|...+.+.-|.-.--.+.- .|| -...++..|-..|.+++.+.+++.-.... ......|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 444555555555555555444332222221 111 12234455556666666666665554221 224455666665
Q ss_pred HHHhcCCHHHHHHH
Q 011902 350 ELVRTKRLKEAEKL 363 (475)
Q Consensus 350 ~~~~~g~~~~a~~~ 363 (475)
.|++- ++++.++.
T Consensus 272 LYsKY-~PeKlmEH 284 (624)
T 3lvg_A 272 LYSKF-KPQKMREH 284 (624)
T ss_dssp HHHSS-CTTHHHHH
T ss_pred HHHhc-CHHHHHHH
Confidence 55554 33443333
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.55 E-value=0.45 Score=41.17 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc-CC
Q 011902 358 KEAEKLFSKMLASGVKPD---GLACSVMIRELCL-----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK-NH 428 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~ 428 (475)
..|...+++.++. .|+ ...|..+...|.. .|+.++|.+.|++..+.+. .-+..++......+++. |+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcCC
Confidence 3444444544433 344 3345555555555 3666666666666666532 11244555555555553 66
Q ss_pred HHHHHHHHHHHHHcCCC
Q 011902 429 SVEAAKLARFMLKKRIW 445 (475)
Q Consensus 429 ~~~A~~~~~~m~~~~~~ 445 (475)
.+++.+.+++.+.....
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 66666666666665544
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.28 E-value=0.7 Score=35.37 Aligned_cols=115 Identities=10% Similarity=0.028 Sum_probs=69.0
Q ss_pred ChhhHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHHHHcC
Q 011902 340 SGGCYSSLVVELVRTKRL------KEAEKLFSKMLASGVKPDG----LACSVMIR---ELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~----~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
|..+|-..+....+.|++ ++..++|++.... ++|+. ..|-.|.- .+...+++++|+++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 344455555555555555 5666666665542 33331 11111111 1123378888999999887752
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011902 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 407 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
- . =..+|-.....-.+.|+.+.|.+++...+..+ +.+...++..++-+.
T Consensus 91 K--k-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 91 K--K-FAFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALRNLN 139 (161)
T ss_dssp T--T-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHHHHH
T ss_pred H--H-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHHhhh
Confidence 2 1 25666666666778899999999999998887 455566666666543
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.08 E-value=0.58 Score=34.74 Aligned_cols=89 Identities=21% Similarity=0.131 Sum_probs=57.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011902 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE---GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 429 (475)
.......+.+-|.+....|. |+..+-..+..++.+..+... +..+++++.+.+. |.......-.|..++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHhhhH
Confidence 33444555566665555443 666666666677777766555 7777777776531 112344555666777888888
Q ss_pred HHHHHHHHHHHHcC
Q 011902 430 VEAAKLARFMLKKR 443 (475)
Q Consensus 430 ~~A~~~~~~m~~~~ 443 (475)
++|.+.++.+++..
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888888776
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.92 E-value=0.00036 Score=64.32 Aligned_cols=186 Identities=10% Similarity=0.008 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011902 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 172 (475)
++..|..++....+.|.++..+..+...++..-.|.+. +.|+-+|++.++..+-.++ .. .||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk~~rL~elEef----l~---~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHTSCSSSTTTST----TS---CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHhhCcHHHHHHH----Hc---CCCcccHHHHHH
Confidence 45567788899999999999999988777664444444 4688899999886553322 22 367666777888
Q ss_pred HHHhcCChhhHHHHHHHhccCC--------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011902 173 LFCEKGDMIAADELMKGMGLID--------------------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~--------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 232 (475)
-|...|.++.|.-+|..+.... -..+..||..+-.+|...+++..|.-.--.++-.
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---- 228 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---- 228 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC----
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc----
Confidence 8888888888877776653321 0235667888888888888777664443333322
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011902 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
......++..|-+.|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+-++.
T Consensus 229 -adeL~elv~~YE~~G~f~ELIsLlEaglglE---rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 229 -ADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp -SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST---TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 1122346667888888888888887776422 35677777777777764 45555444443
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.63 E-value=4.7 Score=37.74 Aligned_cols=190 Identities=12% Similarity=0.129 Sum_probs=96.7
Q ss_pred CChhhHHHHHHHhcc-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH----hcC
Q 011902 178 GDMIAADELMKGMGL-----IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC----RLG 248 (475)
Q Consensus 178 g~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~----~~g 248 (475)
|+++.|++.+..+.+ .+..........++..|...|+++...+.+..+.+..-.. ......++..+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 677777777655543 2233445567777888888888888777776655432221 222233333222 222
Q ss_pred ChHHHH--HHHHHHHhc-CCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHH
Q 011902 249 SMERAL--ELLGEMEKE-GGDCSP---NVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GCAPN---RVTISTLIKGFC 317 (475)
Q Consensus 249 ~~~~a~--~~~~~~~~~-~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~ 317 (475)
..+... .+.+..... ...+-. .......+...|...|++.+|.+++..+... |.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222211 111111110 000001 1112244566667777777777777776532 21111 234455566677
Q ss_pred hcCCHHHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 318 VEGNLDEAYQLIDKVVA----GGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 318 ~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
..+++..|..++..+.. ....|+ ...|...+..+...+++.+|.+.|.+..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77777777777766532 122222 2345555566666677777666666554
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.56 E-value=2.6 Score=38.71 Aligned_cols=69 Identities=9% Similarity=-0.074 Sum_probs=35.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 011902 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVDK 453 (475)
Q Consensus 382 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~ 453 (475)
++.++...|+.+++...+..+.... +.+...|..++.++.+.|+..+|++.|+++.+ .|+.|++.+-..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3444455555555555555555443 22445555555555555555555555554432 255555554433
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.44 E-value=1.5 Score=33.63 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011902 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 213 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+|.++|.++|+.+.+.+-. =...|......-.+.|++..|.+++.....
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 4555555555555443211 144444444444455555555555555554
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.74 Score=46.01 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=76.4
Q ss_pred HHHHHHhcCC-hhhHHHHHHHhccCCCCCChhhH--HHHHHHHHhcCC-HHHHHHHHHHHHHC------CCC-cCH----
Q 011902 170 VIRLFCEKGD-MIAADELMKGMGLIDLYPDIITY--VSMIKGFCNAGR-LEDACGLFKVMKRH------GCA-ANL---- 234 (475)
Q Consensus 170 li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~-~~~---- 234 (475)
++..+...++ .+.|..+|+++.... |...++ ..++..+...++ --+|.+++.+..+. ..+ .+.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 3333444555 577899999887653 333332 233333333332 23455555544321 111 111
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 235 ------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 235 ------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.....-.+.+...|+++.|+++-++..... |.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223455677899999999999988742 4568899999999999999999999988873
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.14 E-value=1.2 Score=38.55 Aligned_cols=81 Identities=14% Similarity=0.057 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCC--cHHHHHHHHHHHHhc-
Q 011902 216 EDACGLFKVMKRHGCAAN---LVAYSALLDGICRL-----GSMERALELLGEMEKEGGDCSP--NVVTYTSVIQIFCGK- 284 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~- 284 (475)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+ | +..++......++..
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln----P~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC----SAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC----CTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC----CCCCchHHHHHHHHHHHhc
Confidence 3444444444443 233 33455555555552 55555555555555532 2 134444444445442
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 011902 285 GMMKEALGILDRMEALGC 302 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~ 302 (475)
|+.+++.+.+++......
T Consensus 254 gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDP 271 (301)
T ss_dssp TCHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 555555555555555433
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.66 E-value=0.87 Score=33.81 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011902 304 PNRVTISTLIKGFCVEGNLDE---AYQLIDKVVAGGSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 304 p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 370 (475)
++..+-..+.-++.+...... ++.+++++.+.+.+ -.......|.-++.+.|++++|.+.++.+++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444444444445555544433 55556555554311 12233333445555666666666666666543
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.47 E-value=0.99 Score=31.68 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=55.1
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011902 101 CEMSRIKQ-NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 101 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 173 (475)
...+.+.. +.-++.+-++.+......|++....+.+.+|.+.+++..|+.+|+.++..- .+...+|..+++-
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 33444444 566778888888888999999999999999999999999999999887532 2345567777653
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.32 E-value=2.3 Score=45.40 Aligned_cols=185 Identities=8% Similarity=0.016 Sum_probs=118.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---------------
Q 011902 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GS--------------- 337 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~--------------- 337 (475)
++..+...+.++.+.++.... +.+...--.+..++...|++++|...|.+.... +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444555566666555544322 224444455667788899999999999764211 00
Q ss_pred ---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011902 338 ---VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410 (475)
Q Consensus 338 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 410 (475)
..-..-|..++..+.+.+.++.+.++-...++..-.-+. ..|..+..++...|++++|...+-.+.....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--- 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--- 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS---
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH---
Confidence 001134777888888999999999888877753212121 2577888999999999999988888776543
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHH--------HHHHH-----Hc-CCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011902 411 VDSDIHSVLLLGLCRKNHSVEAAKL--------ARFML-----KK-RIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 411 ~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~m~-----~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
-......++..+|..|..+.-..+ +++.+ .. .+...+..|..+..-....|++..|-.+
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence 346788888888877766654322 22222 11 2233446788888888888887766543
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.04 E-value=6.9 Score=41.75 Aligned_cols=150 Identities=11% Similarity=0.080 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------------
Q 011902 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC---------------- 230 (475)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------------- 230 (475)
...++..+.+.+..+.+.++..-.. .+...--.+..++...|++++|...|++... |+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence 3345666667777777666554332 2333334555667777888888777765321 11
Q ss_pred -------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 231 -------AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN--VVTYTSVIQIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 231 -------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
..-..-|..++..+.+.|.++.+.++-....+....-.++ ...|..+...+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 1122346778888999999999998887776642211222 2257888899999999999999998887654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH
Q 011902 302 CAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~~g~~~~ 324 (475)
.+ ...+..|+...|..|..+.
T Consensus 969 ~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SC--HHHHHHHHHHHHHHCCHHH
T ss_pred HH--HHHHHHHHHHHHhCCChhh
Confidence 43 3456667776776665443
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.92 E-value=8.1 Score=36.12 Aligned_cols=246 Identities=11% Similarity=0.040 Sum_probs=131.0
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----H
Q 011902 212 AGRLEDACGLFKVMKRH-----GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----C 282 (475)
Q Consensus 212 ~g~~~~a~~~~~~m~~~-----g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~ 282 (475)
.|+++.|++.+..+.+. ....+......++..|...|+++...+.+..+... .+..+.. ...+++.+ .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk-r~qlk~a--i~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK-HGQLKLS--IQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT-TTTSHHH--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hhhhHHH--HHHHHHHHHHHHh
Confidence 36788888877666542 23445777888999999999999988888776654 2322332 22333322 2
Q ss_pred hcCCHHHHH--HHHHHHHH--cC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHH
Q 011902 283 GKGMMKEAL--GILDRMEA--LG-CAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG--GSVSS---GGCYSSLVV 349 (475)
Q Consensus 283 ~~g~~~~a~--~~~~~m~~--~~-~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~ 349 (475)
.....+... .+.+.... .| +-. .......|...+...|++.+|.+++..+... +.... ...+...++
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222222211 11111110 01 111 0112345667778888888888888887542 22111 245666777
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHH----HH
Q 011902 350 ELVRTKRLKEAEKLFSKMLA----SGVKPD--GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS----VL 419 (475)
Q Consensus 350 ~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~l 419 (475)
.|...+++..|..++.+... ....|+ ...+...+..+...+++.+|.+.|.++.+..... .+...+. .+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~-~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK-SDEAKWKPVLSHI 264 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc-CCHHHHHHHHHHH
Confidence 78888888888888777642 222222 1344555566667778887777777766531110 1222222 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011902 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 420 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
+.+..-.+....-..++........-++...+..++.+|...
T Consensus 265 v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 265 VYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhc
Confidence 222222333333333333333333334445566666666543
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.57 E-value=11 Score=36.90 Aligned_cols=252 Identities=10% Similarity=0.008 Sum_probs=118.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 011902 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 133 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 212 (475)
+.-+..+.+.+++...+.++.. . +.+...-.....+....|+..+|......+-..| ......+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 4455667777777777665543 1 3455555556667777888777777777766555 44566677777777765
Q ss_pred CCHH--HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH--------------
Q 011902 213 GRLE--DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS-------------- 276 (475)
Q Consensus 213 g~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------------- 276 (475)
|.+. ....=++.+...| +...-..++..+ . .+.....+.+..+.+. +++......
T Consensus 150 g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~ 220 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN----PNTVLTFARTTGATDFTRQMAAV 220 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC----GGGHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC----hHhHHHHHhccCCChhhHHHHHH
Confidence 5532 2333333444433 222222222211 1 1111111222233331 122221110
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011902 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK----GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (475)
.+.-+.+ .+.+.|...+....... ..+......+-. .....+...++...+........ +.....-.+....
T Consensus 221 ~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Al 296 (618)
T 1qsa_A 221 AFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMAL 296 (618)
T ss_dssp HHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHH
Confidence 1111222 35666666666665432 122222222221 22223323445555555443322 2222222333334
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 353 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+.|+++.|.+.|..|..... ....-.--+.+++...|+.++|..+|..+..
T Consensus 297 r~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 55777777777766653211 1222233344455666777777777777654
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.09 E-value=1.3 Score=40.75 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 011902 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA-----LGCAPNRVT 308 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 308 (475)
+...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34456677778888888888888777643 45777888888888888888888888877643 477777654
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.86 E-value=1.3 Score=44.21 Aligned_cols=51 Identities=12% Similarity=-0.064 Sum_probs=31.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 439 (475)
|...|+++.|+++-++....- +.+..+|..|..+|...|+++.|+-.++-+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 444566666666666666643 235666666666666666666666655544
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.49 E-value=3 Score=29.31 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=31.8
Q ss_pred hhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011902 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 228 (475)
.-++.+-++.+...++.|++....+.+++|.+.+|+..|.++|+-.+.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3355556666666666677777777777777777777777777665543
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.37 E-value=1.8 Score=32.23 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=55.1
Q ss_pred HHHHhcC-ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011902 102 EMSRIKQ-NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 102 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 173 (475)
..+.+.. +..+..+-++.+....+.|++....+.+.+|.+.+++..|+.+|+-++.. ..+....|..+++-
T Consensus 60 ~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 60 TYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 3444444 55677778888888899999999999999999999999999999988754 23445668777753
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.93 E-value=19 Score=36.96 Aligned_cols=258 Identities=14% Similarity=0.067 Sum_probs=140.4
Q ss_pred HHHhcCChhhHHHHHHHhccCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CcCHHHHHHHHHH
Q 011902 173 LFCEKGDMIAADELMKGMGLIDLYPDII--TYVSMIKGFCNAGRLEDACGLFKVMKRHGC-------AANLVAYSALLDG 243 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------~~~~~~~~~ll~~ 243 (475)
+....|+.++++.+++.....+-..+.. .=..+.-+.+..|..+++..++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4567788888888887766421012222 222333445566666678887776665321 0112222333333
Q ss_pred HHhcCC-hHHHHHHHHHHHhcCCCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHh
Q 011902 244 ICRLGS-MERALELLGEMEKEGGDCSPNVVTYT--SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK--GFCV 318 (475)
Q Consensus 244 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~ 318 (475)
++-.|. -+++.+.+..+.... .+...... .+...++-.|+.+....++..+.+.. +......+.- ++..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333343 345666666666532 11111112 22334556688887788888776542 3333333333 3446
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011902 319 EGNLDEAYQLIDKVVAGGSVSSGGCY--SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 396 (475)
.|+.+.+..+++.+.... .|....- .++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 788888888888887642 2322211 234456778889877777888887642 223333333333555577777777
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 011902 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS-VEAAKLARFMLK 441 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 441 (475)
++++.+.+.+ .+.+..-..+..+....|.. .+|+.++..+..
T Consensus 615 rlv~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7777666644 22444344444444445543 567777777753
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.07 E-value=22 Score=36.50 Aligned_cols=314 Identities=9% Similarity=-0.010 Sum_probs=168.8
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCH--hhHHHHHHHHHhcCChhhHHHHHHHhccCCC-------CCChhhHHHHHHHH
Q 011902 139 CEKARLANEAMWVLRKMPEFDLRPDT--IIYNNVIRLFCEKGDMIAADELMKGMGLIDL-------YPDIITYVSMIKGF 209 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------~~~~~~~~~li~~~ 209 (475)
....|+.++++.+++.....+-..+. ..-..+.-+.+..|..+++.+++.......- .+....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566777888888776642111222 2333344456667776678887776554210 01111122222233
Q ss_pred H--hcCCHHHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011902 210 C--NAGRLEDACGLFKVMKRHGCAANLVAYS--ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 210 ~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
+ -.++ +++.+.+..+....- +...... +|...+.-.|+-+....++..+.+.. ..+..-.-.+.-++...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 3 3344 456666666665421 1111122 23334556788888888888776631 122222233333455789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011902 286 MMKEALGILDRMEALGCAPNRVTIS--TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 363 (475)
+.+.+..+++.+.... .|....-. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 9999999988887642 22222222 33446778899888888998888653 22344344444455556777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCCchhhHHHHHHHH--HhcC-------CHHHHH
Q 011902 364 FSKMLASGVKPDGLACSVMIRELCLGGQV-LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL--CRKN-------HSVEAA 433 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g-------~~~~A~ 433 (475)
+..+.+.+ .|..+.-..+.-+....|.. .++...+..+.... +..+-...+.++ +-.| +....+
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~-----d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l 690 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDP-----VDFVRQAAMIALSMILIQQTEKLNPQVADIN 690 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCC-----CHHHHHHHHHHHHHHhcCCccccchHHHHHH
Confidence 77666543 45555445555555555544 56777888886532 333333333333 3333 333334
Q ss_pred HHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHh
Q 011902 434 KLARFMLKK-RIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 434 ~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+.+...... .-.++...-..+..++...|...
T Consensus 691 ~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 691 KNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 444444433 22344556667777777777544
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.81 E-value=9.5 Score=34.85 Aligned_cols=168 Identities=8% Similarity=-0.062 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHH
Q 011902 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP---NVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
......|...|.+.|+.++..+++.....- .+..+ .......++..+... +..+.-.++..+..+..- -...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~f 96 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPF-LSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTG-GGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456677888999999999999888877542 11112 233355667777664 334444555555443211 112233
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH
Q 011902 310 ------STLIKGFCVEGNLDEAYQLIDKVVAGGSVSS-----GGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDG 376 (475)
Q Consensus 310 ------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~ 376 (475)
..+...|...|++.+|.+++..+.+.--..| ...|..-+..|...++..++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 2577888888999999888888765321112 244666677788888888888888777542 233444
Q ss_pred HHHHHHH--H--HHH-hcCCHHHHHHHHHHHH
Q 011902 377 LACSVMI--R--ELC-LGGQVLEGFCLYEDIE 403 (475)
Q Consensus 377 ~~~~~ll--~--~~~-~~g~~~~a~~~~~~~~ 403 (475)
.....+- . .+. ..+++..|...|-+..
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3322211 1 234 6788888888776653
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.47 E-value=5.3 Score=29.78 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=35.5
Q ss_pred hHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011902 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 182 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
+..+-++.+...++.|++....+.+++|-+.+|+..|.++|+-.+.+- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455555666666666777777777777777777777777776665431 22333454444
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.82 E-value=8.1 Score=28.84 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=51.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 371 GVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 371 ~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+-.|+..+--.+..++.+..+ ..++..+++++.+.+ |......+-.+..++.+.|++++|.++.+.+++..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 345677666666666766654 456788888888765 22245666677788889999999999998888775
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.99 E-value=22 Score=31.45 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHH
Q 011902 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF----SKMLASGVKPDGLACSVMIR 384 (475)
Q Consensus 309 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~ 384 (475)
|.++..-|.+.+++++|.+++-.- ...+.+.|+...|.++. +-+.+.++++|......|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344445566666666666654321 11233445444443333 33334455666665555555
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011902 385 ELCLGGQVL-EGFCLYEDIEK----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 385 ~~~~~g~~~-~a~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (475)
.+.....-+ .-..+.+++.+ .|-.+.-|......+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 554433211 11222333222 22222335566666677777777777766554
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.72 E-value=24 Score=30.93 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 011902 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL----FSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~ll 383 (475)
+|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ .+-+.+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4455566677778888887776432 1234455665555443 44444567777777777777
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----HcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011902 384 RELCLGGQVL-EGFCLYEDIE----KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 384 ~~~~~~g~~~-~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (475)
..+.....-+ .-.++.+++. +.|..+.-+...+..+...|.+.|++.+|...|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6655433111 1233344443 233223336777888888888888888887754
No 256
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=82.37 E-value=27 Score=31.28 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC--hhhHHHHHHHhc
Q 011902 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD--MIAADELMKGMG 191 (475)
Q Consensus 132 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~ 191 (475)
...+|.-|...++.++|...++++..... .......+|......++ -+.+-.++..+.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 34456666677778888877777653221 22333344443333332 234455555555
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.04 E-value=12 Score=34.87 Aligned_cols=61 Identities=8% Similarity=0.017 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011902 201 TYVSMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 201 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
++..+...|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444555555555555555555555442 112223344444444555555555555554443
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.41 E-value=11 Score=35.03 Aligned_cols=98 Identities=9% Similarity=-0.100 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHH--
Q 011902 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSV--SSGGCYSSLVVELVRTKRLKEAEKLFSKMLA---SGVKPDGLACS-- 380 (475)
Q Consensus 308 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~-- 380 (475)
+...+...|.+.|+++.|.+.+.++...-.. .-...+-.+++.+...+++..+...+.+... .+-.|+....-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667778888888888888888888764322 2245677777788888888888888777653 22223222110
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 381 VMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 381 ~ll~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.-...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111234567777777777766654
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=81.21 E-value=7.6 Score=33.17 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=12.4
Q ss_pred HHHHHHHhcCChhhHHHHHHH
Q 011902 169 NVIRLFCEKGDMIAADELMKG 189 (475)
Q Consensus 169 ~li~~~~~~g~~~~a~~~~~~ 189 (475)
..+...++.|+.+.+..+++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHHHc
Confidence 344555677777665555543
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.09 E-value=13 Score=26.06 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=6.6
Q ss_pred HhcCChhhHHHHHHH
Q 011902 175 CEKGDMIAADELMKG 189 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~ 189 (475)
...|++++|..+.+.
T Consensus 51 mNrG~Yq~Al~l~~~ 65 (116)
T 2p58_C 51 MNRGDYASALQQGNK 65 (116)
T ss_dssp HHTTCHHHHHHHHTT
T ss_pred HcchhHHHHHHhcCC
Confidence 344444444444433
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.19 E-value=12 Score=26.14 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=21.5
Q ss_pred HHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011902 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 229 (475)
+...|++++|..+.+.+. .||...|.+|-. .+.|-.+++..-+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344455555544443332 344444433322 24444444444444444443
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.78 E-value=19 Score=27.24 Aligned_cols=69 Identities=13% Similarity=0.007 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 373 KPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 373 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|+..+--.+..++.+..+ ..++..+++++.+.+. .......-.+..++.+.|++++|.++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 5666666666666666654 4567778888777542 2244555566778888888888888888888776
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.72 E-value=8.1 Score=32.91 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011902 234 LVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
...-..++..+|-.|+++.|.+-++...
T Consensus 31 a~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 31 ASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3333334444444444444444443333
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.35 E-value=19 Score=26.90 Aligned_cols=73 Identities=5% Similarity=0.085 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011902 302 CAPNRVTISTLIKGFCVEGN---LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 376 (475)
-.|+..+--...-++.+..+ ..+++.+++++.+.+..-....+..|.-++.+.|++++|.+..+.+++. .|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 34555555555555555543 3457777777766552223445555666777888888888888777754 5653
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.15 E-value=10 Score=29.52 Aligned_cols=59 Identities=8% Similarity=0.005 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCcC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011902 204 SMIKGFCNAGRLEDACGLFKVMKRHG-CAAN-------LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 204 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.-+..+...|.++.|+-+.+.+.... .+|+ ..++..+.+++...|++..|...|++..+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33455555666666665555433211 1122 12444556666667777777777766543
No 266
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.33 E-value=21 Score=27.78 Aligned_cols=115 Identities=7% Similarity=-0.022 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-HHH
Q 011902 310 STLIKGFCVEGNLDEAYQLIDKVVAGG-SVSS-------GGCYSSLVVELVRTKRLKEAEKLFSKMLAS-GVKPDG-LAC 379 (475)
Q Consensus 310 ~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~-~~~ 379 (475)
..-+..+...|.++.|+-+.+.+.... ..++ ..++..+.+++...|++..|...|++.++. ..-+.. .+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 344556666777777777666654321 1111 124455666777777777777777776532 111111 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 380 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 439 (475)
..+- ....... .... ..+.+.--.+..+|.+.|++++|+.+++..
T Consensus 104 ~~~~----~~ss~p~---------s~~~--~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 104 PSTG----NSASTPQ---------SQCL--PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------------------CC--CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccc----ccCCCcc---------cccc--cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1010 0000000 0011 124455556888999999999999987653
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.15 E-value=15 Score=31.31 Aligned_cols=54 Identities=4% Similarity=-0.023 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011902 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188 (475)
Q Consensus 134 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 188 (475)
..+...++.|+.+....+++.-.......+..-+ +.+...+..|+.+-+..+++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHHHHHHH
Confidence 4566677788887777777654332222222222 34445566777655444443
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.21 E-value=41 Score=29.76 Aligned_cols=169 Identities=12% Similarity=0.076 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCCHHHHH
Q 011902 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG----ILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~ 310 (475)
.+|.++..-|.+.+++++|++++..-.. .+.+.|+..-|.+ +++...+.++++|.....
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~-----------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~ 98 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ-----------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRG 98 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH-----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3455666778889999999988654332 2344555544443 345566778888888888
Q ss_pred HHHHHHHhcCCHH-HHHHHHHHHHh----CC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011902 311 TLIKGFCVEGNLD-EAYQLIDKVVA----GG--SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 311 ~li~~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 383 (475)
.++..+.....-+ .=.++++++++ .| ..-|......+...|.+.+++.+|...|- . |-.+....|..++
T Consensus 99 rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL 174 (336)
T 3lpz_A 99 KLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARME 174 (336)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHH
Confidence 8888777655321 12334444332 22 22356777788889999999999887763 2 4344446776666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 441 (475)
..+...+...++ + ....-.+..|.-.++...|..+++...+
T Consensus 175 ~ew~~~~~~~e~----------------d-lfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 175 YEWYKQDESHTA----------------P-LYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHTSCGGGH----------------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccH----------------H-HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555444431111 1 1223344456677888888887766654
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.20 E-value=29 Score=28.03 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011902 356 RLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 356 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 409 (475)
...++.++|..|...|+--. +..|......+-..|++++|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35566677777766655433 3445555555666677777777777776666544
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=73.79 E-value=27 Score=28.76 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=7.4
Q ss_pred HHhcCCHHHHHHHHHH
Q 011902 316 FCVEGNLDEAYQLIDK 331 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~ 331 (475)
.+..|+.+-+..+++.
T Consensus 86 A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555544444433
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.74 E-value=63 Score=29.44 Aligned_cols=293 Identities=12% Similarity=0.055 Sum_probs=146.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccC-CCCC---CHhhHHHHHHHHHhcC-ChhhHHHHHHHhccCCCCCChhhH---
Q 011902 131 MMKVIFNLCEKARLANEAMWVLRKMPEF-DLRP---DTIIYNNVIRLFCEKG-DMIAADELMKGMGLIDLYPDIITY--- 202 (475)
Q Consensus 131 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~--- 202 (475)
....+...|.+.|+.++..+++...... +.-+ .....+.+++.+.... ..+.-.++..+..+.. .-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3444566666677766666666655431 1011 2233455666555432 2233333333332211 0111223
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCCcHH
Q 011902 203 ---VSMIKGFCNAGRLEDACGLFKVMKRH--GCA---ANLVAYSALLDGICRLGSMERALELLGEMEKEGGD--CSPNVV 272 (475)
Q Consensus 203 ---~~li~~~~~~g~~~~a~~~~~~m~~~--g~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ 272 (475)
.-++..|...|++.+|.+++..+.+. ... .-...|-.-+..|...+++.++...+......... ++|...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 25778888899999998888887763 111 11334556677888889999999888877653211 223222
Q ss_pred HHHHH--HHHHH-hcCCHHHHHHHHHHHHHc-C-C-CC---CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCChh
Q 011902 273 TYTSV--IQIFC-GKGMMKEALGILDRMEAL-G-C-AP---NRVTISTLIKGFCVEGNLDEAYQLID-KVVAGGSVSSGG 342 (475)
Q Consensus 273 ~~~~l--i~~~~-~~g~~~~a~~~~~~m~~~-~-~-~p---~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~ 342 (475)
..--. ...+. ..+++..|...|-+..+. . . .| +...|..|.... . ++..+...++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~-~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-L-GQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-T-TCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-c-CCHHHHHHHhccccccccCCccHH
Confidence 21111 22345 678899988887655321 1 0 11 122333332222 2 22222222221 111111345555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCchhhHHH
Q 011902 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG----FLSSVDSDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~~ 418 (475)
.+..++.+| ..+++.+..+++..... .+..|...... ...+++.+.+.+ +. +-...++..
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h-------------~~~L~~~Ir~~~L~~i~~-pYsrIsl~~ 321 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAH-------------LGTLYDTMLEQNLCRIIE-PYSRVQVAH 321 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHH-------------HHHHHHHHHHHHHHHHHT-TCSEEEHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHH-------------HHHHHHHHHHHHHHHHhH-hhceeeHHH
Confidence 566666665 56778777777666532 23444432111 111222222211 11 124455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011902 419 LLLGLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 419 l~~~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
+...+.- ..+++...+-+|+..|.
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 6655532 67888999999987653
No 272
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=68.86 E-value=41 Score=30.90 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=18.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHhHH
Q 011902 424 CRKNHSVEAAKLARFMLKKRIWLQGPY--VDKIVEHLKKSGDEELI 467 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~a 467 (475)
++.|+.+ +++.+++.|..|+... -...+....+.|..+.+
T Consensus 352 ~~~g~~~----iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~ 393 (437)
T 1n11_A 352 AQQGHTD----IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVT 393 (437)
T ss_dssp HHTTCHH----HHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHH
T ss_pred HHCChHH----HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHH
Confidence 3455543 4444555665554321 11233344555654443
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.77 E-value=35 Score=25.78 Aligned_cols=71 Identities=6% Similarity=0.100 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011902 303 APNRVTISTLIKGFCVEGN---LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 375 (475)
.|+..+-....-++.+... ..+++.+++++.+.+..-.......|.-++.+.|++++|.+..+.+++. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 4555555555555555543 3456677777666443223344455666777777777777777777755 554
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=68.08 E-value=68 Score=28.75 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011902 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR--LEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 167 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
...+|.-|...++.++|...++++..... .......++......++ .+.+-.++..+.. ++-+.......+..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 46678888999999999999999863221 12223334443333332 3445566666653 44444444444433
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.94 E-value=30 Score=24.24 Aligned_cols=83 Identities=14% Similarity=0.104 Sum_probs=53.9
Q ss_pred ChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 011902 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 186 (475)
..++|..+-+-+...+. .....+|+ .+...|++++|..+.+... .||...|-.|.. .+.|-.+++..-
T Consensus 21 ~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 34556556555555442 22233443 5677899999988887766 488888877654 477888888887
Q ss_pred HHHhccCCCCCChhhH
Q 011902 187 MKGMGLIDLYPDIITY 202 (475)
Q Consensus 187 ~~~m~~~~~~~~~~~~ 202 (475)
+.++...| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 77777666 4444444
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.21 E-value=31 Score=24.19 Aligned_cols=83 Identities=13% Similarity=0.017 Sum_probs=53.4
Q ss_pred ChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 011902 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 186 (475)
..++|..+-+-+...+. .....+|+ .+...|++++|..+.+... -||...|-.|.. .+.|-.+++..-
T Consensus 22 ~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 34555555555555442 22223343 5677889999998888776 488888877655 367777777777
Q ss_pred HHHhccCCCCCChhhH
Q 011902 187 MKGMGLIDLYPDIITY 202 (475)
Q Consensus 187 ~~~m~~~~~~~~~~~~ 202 (475)
+.++...| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 77777666 4444444
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.02 E-value=50 Score=26.51 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=49.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHH
Q 011902 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 207 (475)
+...-...+.++.+.++. ++...+..+.. .++..+-...+.++.+.|+.+....+. ++.. .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLI-KALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHH-HHHh---CCCHHHHHHHHH
Confidence 444444444455544442 22233322222 244445455555555555533322222 2222 344444444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011902 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 208 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
++.+.|+.+ +...+..+.+ .++..+-...+.++.+.+. +++...+..+.
T Consensus 135 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 555444432 2333333332 2344444444555555444 23333333333
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=65.13 E-value=54 Score=26.79 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=39.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCccCHHh--HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH---hhHHHHHHHHHhc
Q 011902 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKM--MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT---IIYNNVIRLFCEK 177 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~ 177 (475)
.....|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++ .|..++. .-. ..+...+..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~-t~l~~A~~~ 89 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT----AGASPMALDRHGQ-TAAHLACEH 89 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSC-CHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCC-CHHHHHHHc
Confidence 34555777777777766655554443221 1123444455666554444443 3322221 112 223334456
Q ss_pred CChhhHHHHHHHh
Q 011902 178 GDMIAADELMKGM 190 (475)
Q Consensus 178 g~~~~a~~~~~~m 190 (475)
|+.+-+..+++..
T Consensus 90 ~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 90 RSPTCLRALLDSA 102 (241)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 6665555555443
No 279
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.97 E-value=13 Score=30.67 Aligned_cols=19 Identities=0% Similarity=0.079 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 011902 135 IFNLCEKARLANEAMWVLR 153 (475)
Q Consensus 135 ll~~~~~~~~~~~A~~~~~ 153 (475)
.+...++.|+.+-+..+++
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 3444445555544444444
No 280
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=62.26 E-value=20 Score=28.56 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHhHHhhcccc
Q 011902 432 AAKLARFMLKKRIWLQGPYVD--KIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 432 A~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~l~~~ 473 (475)
-.++++.+++.|..++..... ..+....+.|+.+.+.-+++.
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 355666666776655433211 234445566777777666654
No 281
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=60.27 E-value=1.3e+02 Score=29.36 Aligned_cols=90 Identities=4% Similarity=-0.031 Sum_probs=50.2
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC
Q 011902 84 AALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163 (475)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 163 (475)
....++.+.....-+..+..+.+.+++......+.. .+.+...-.....+....|+..+|....+.+-..| ...
T Consensus 62 l~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~ 135 (618)
T 1qsa_A 62 VRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQ 135 (618)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCC
T ss_pred HHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCC
Confidence 334455555555556666777777777766654321 24455555556667777787666665555443333 223
Q ss_pred HhhHHHHHHHHHhcCC
Q 011902 164 TIIYNNVIRLFCEKGD 179 (475)
Q Consensus 164 ~~~~~~li~~~~~~g~ 179 (475)
...+..++..+.+.|.
T Consensus 136 p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 136 PNACDKLFSVWRASGK 151 (618)
T ss_dssp CTHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHCCC
Confidence 4455556666555443
No 282
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=59.50 E-value=41 Score=29.39 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 011902 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSVMIRELCLGGQ--VLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~ 408 (475)
...++.-|...|+.++|.+.++++. .|. ......+..++-+.++ .+....++..+.+.|+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~----~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC----CGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC----CCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 4566677777777777777777774 221 1222333333333322 34455666666666554
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=59.42 E-value=41 Score=27.44 Aligned_cols=49 Identities=4% Similarity=-0.031 Sum_probs=21.8
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011902 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 188 (475)
..++.|+.+....+++.-..... ++..- ...+...+..|+.+-+..+++
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~~-~~~~g-~t~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVRQ-PDKEN-VTLLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTC-CCTTS-CCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHcCCCcCC-CCCCC-CCHHHHHHHhCCHHHHHHHHH
Confidence 34456666555555553222111 11111 123444556676655544444
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=59.26 E-value=69 Score=29.34 Aligned_cols=331 Identities=12% Similarity=0.132 Sum_probs=155.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCccCHHh--HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc
Q 011902 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM--MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177 (475)
Q Consensus 100 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 177 (475)
.+...+..|+.+.+..++ +.|..|+... ..+.+...+..|+.+-+..+++.-...+. .+.... +.+...+..
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~-t~L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDDQ-TPLHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTSC-CHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCC-CHHHHHHHC
Confidence 444556667766555554 4465554321 23456666677887766666664322211 122222 334455677
Q ss_pred CChhhHHHHHHHhccCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCChH
Q 011902 178 GDMIAADELMKGMGLIDLYPD---IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN---LVAYSALLDGICRLGSME 251 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~ 251 (475)
|+.+-+.-+++. |..++ ....+ .+...+..|+.+.+..+++ .+..++ ..-+ ..+...+..|+.+
T Consensus 91 g~~~~v~~Ll~~----ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~~ 160 (437)
T 1n11_A 91 GHTNMVKLLLEN----NANPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKVR 160 (437)
T ss_dssp TCHHHHHHHHHH----TCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCHH
T ss_pred CCHHHHHHHHhC----CCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCHH
Confidence 877655555543 33333 22222 3344556777766555554 332221 1111 2344456677766
Q ss_pred HHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHH
Q 011902 252 RALELLGEMEKEGGDCS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI--STLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~ 328 (475)
-+..++ +.+..+. .+....+ .+...+..|+.+ +++.+.+.|..++...+ ...+...+..|+.+-+..+
T Consensus 161 ~v~~Ll----~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 231 (437)
T 1n11_A 161 VAELLL----ERDAHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231 (437)
T ss_dssp HHHHHH----HTTCCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHH----hCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 554444 3222111 1111122 233445566654 44555556655543221 1233445567776554444
Q ss_pred HHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011902 329 IDKVVAGGSVSSG---GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 329 ~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~ 402 (475)
.+.|..++. .-.+. +...+..|+.+-+.. +.+.|..++. ...+.|.. .+..|..+-+ +.+
T Consensus 232 ----l~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~----Ll~~~~~~~~~~~~g~t~L~~-A~~~~~~~~~----~~L 297 (437)
T 1n11_A 232 ----LQYGGSANAESVQGVTP-LHLAAQEGHAEMVAL----LLSKQANGNLGNKSGLTPLHL-VAQEGHVPVA----DVL 297 (437)
T ss_dssp ----HHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHH----HHTTTCCTTCCCTTCCCHHHH-HHHHTCHHHH----HHH
T ss_pred ----HHcCCCCCCCCCCCCCH-HHHHHHCCCHHHHHH----HHhcCCCCCCCCCCCCCHHHH-HHHcCCHHHH----HHH
Confidence 444543332 11222 334456677654443 3444443332 22233333 3456666544 444
Q ss_pred HHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCCHhHHhhccccC
Q 011902 403 EKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV--DKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 403 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~l~~~~ 474 (475)
.+.|..... +..-.+.| ...+..|+.+ +++.+++.|..++.... ...+....+.|..+.+.-+++.|
T Consensus 298 l~~g~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g 367 (437)
T 1n11_A 298 IKHGVMVDATTRMGYTPL-HVASHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367 (437)
T ss_dssp HHHTCCTTCCCSSCCCHH-HHHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCCccCCCCCCCCCCHH-HHHHHcCcHH----HHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCc
Confidence 455543211 22222333 3345677765 34445556655443221 12344456678888887776543
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.46 E-value=62 Score=24.76 Aligned_cols=55 Identities=9% Similarity=-0.031 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011902 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
++..+|..|..+|+-. .-...|......+...|++++|.++|+.-++.+-.|-..
T Consensus 83 dp~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGT-LSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp CHHHHHHHHHTTTTTT-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3677777777776532 245667777777777788888888887777776555433
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.56 E-value=7.8 Score=32.75 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=11.3
Q ss_pred HHHHHhcCCHhHHhhcccc
Q 011902 455 VEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 455 ~~~~~~~g~~~~a~~l~~~ 473 (475)
+....+.|+.+.++.+++.
T Consensus 229 L~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3344566777777666543
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.66 E-value=51 Score=27.50 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=9.8
Q ss_pred HHHHHhcCCHHHHHHHHHhc
Q 011902 136 FNLCEKARLANEAMWVLRKM 155 (475)
Q Consensus 136 l~~~~~~~~~~~A~~~~~~~ 155 (475)
++.+...+++++|++++++.
T Consensus 25 LDv~IA~r~feeAv~lle~~ 44 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDI 44 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 33444455555555555444
No 288
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.65 E-value=80 Score=25.48 Aligned_cols=55 Identities=13% Similarity=0.015 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011902 285 GMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 339 (475)
+...++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566677777766655433 3345555666666677777777777766666666
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.60 E-value=67 Score=24.57 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=25.8
Q ss_pred HHHHHHhcccCCCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCC
Q 011902 148 AMWVLRKMPEFDLRP-DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP 197 (475)
Q Consensus 148 A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 197 (475)
+.++|..|...|+-. -...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555555555544322 23345555555555566666666665555444444
No 290
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.56 E-value=1.1e+02 Score=26.75 Aligned_cols=169 Identities=12% Similarity=0.072 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCCHHHHH
Q 011902 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG----ILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~ 310 (475)
..|.++..-|.+.+++++|.+++..-.. .+.+.|+..-|.+ +++...+.+++++.....
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~-----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~ 96 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL-----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVA 96 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3556667778888899988888754432 2344566554444 455566678888888888
Q ss_pred HHHHHHHhcCCHH-HHHHHHHHHH----hCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011902 311 TLIKGFCVEGNLD-EAYQLIDKVV----AGGS--VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 311 ~li~~~~~~g~~~-~a~~~~~~~~----~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 383 (475)
.++..+.....-+ .=.++++.++ +.|- .-+......+...|.+.|++.+|...|-. |-.-+...+..++
T Consensus 97 rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l 172 (312)
T 2wpv_A 97 RLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLL 172 (312)
T ss_dssp HHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHH
Confidence 8887776643211 1233444443 2222 22667788888889999999888876641 2111345555555
Q ss_pred HHHHhc---CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 384 RELCLG---GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 384 ~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.-+... |...++ +.. ....+-.|.-.|+...|..+++...+
T Consensus 173 ~~w~~~~~~~~~~e~----------------dlf-~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 173 WDWLCQVDDIEDSTV----------------AEF-FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHTTCCCHHHH----------------HHH-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcchH----------------HHH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444433 332221 111 12233345567888888888877653
No 291
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=54.41 E-value=84 Score=27.89 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 011902 237 YSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556777777777777777776664
No 292
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=54.39 E-value=1.4e+02 Score=27.77 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=37.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhcC
Q 011902 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS-----MERALELLGEMEKEG 264 (475)
Q Consensus 211 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~ 264 (475)
+..+.+.|+.++.+|.+.|..|....-..+..++-.-|. ..-|...++....-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 457889999999999998877766665666666666554 445666666666633
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.05 E-value=77 Score=26.39 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=45.5
Q ss_pred HHHHHHhcCChhhHHHHHHHhccC--CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011902 170 VIRLFCEKGDMIAADELMKGMGLI--DLYP----DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 170 li~~~~~~g~~~~a~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
-++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 456777788888888888766431 1121 111222233333333333334444444422 3345555556666
Q ss_pred HHhcCChHHHHHHHHHHH
Q 011902 244 ICRLGSMERALELLGEME 261 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~ 261 (475)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666677777666665443
No 294
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=53.21 E-value=83 Score=24.89 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=56.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHH
Q 011902 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 207 (475)
+...-...+.++.+.+.. ++...+..+.. .++..+-...+.++.+.++.+....+.. +.. .++..+-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHc---CCCHHHHHHHHH
Confidence 444444444555555543 23333333332 2455555566666666665443333333 322 345555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011902 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 208 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
++.+.++.+ +...+..+... ++..+-...+.++.+.|. +++...+..+..
T Consensus 130 aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 130 ALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 555555432 33333333332 355555555555555554 334444444443
No 295
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=53.19 E-value=2.1e+02 Score=29.54 Aligned_cols=160 Identities=9% Similarity=0.009 Sum_probs=74.6
Q ss_pred HHHHHHHhcCC---hHHHHHHHHHHHhcC--CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011902 239 ALLDGICRLGS---MERALELLGEMEKEG--GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 239 ~ll~~~~~~g~---~~~a~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
.++...|+.|+ .+.|.+.|+.....+ ..++||.. ..+...-.+.|..++-..+++...... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 45555666665 446666776665432 22445432 223333344566555555666665542 233334566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhc
Q 011902 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLA---SGVKPDGLACSVMIRELCLG 389 (475)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~ 389 (475)
.+++-..+.+...++++.....+......... ++.+...+. -.+.|.+.+.+=-+ .........+..++......
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~ 844 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRR 844 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 66666667766666666665433222222222 333333322 12334444433211 11122233455666655554
Q ss_pred CCHHHHHHHHHHHHH
Q 011902 390 GQVLEGFCLYEDIEK 404 (475)
Q Consensus 390 g~~~~a~~~~~~~~~ 404 (475)
-..++-.+-++.+.+
T Consensus 845 ~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 845 FSSEFELQQLEQFKK 859 (909)
T ss_dssp CCSHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHh
Confidence 444444444444444
No 296
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=52.62 E-value=80 Score=27.69 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=12.7
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 011902 317 CVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~ 334 (475)
...|++++|...|+.++.
T Consensus 125 ~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 456778888777777654
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=52.26 E-value=1.2e+02 Score=26.46 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChhh
Q 011902 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN--LDEAYQLIDKVVAGGSVSSGGC 343 (475)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~ 343 (475)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+...+++..+.+.|+.+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 345677777777788887777777532111 12334444445444332 3456677777776666654433
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.97 E-value=50 Score=28.24 Aligned_cols=19 Identities=5% Similarity=-0.186 Sum_probs=8.9
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 011902 136 FNLCEKARLANEAMWVLRK 154 (475)
Q Consensus 136 l~~~~~~~~~~~A~~~~~~ 154 (475)
+...+..|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334445555554444443
No 299
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=50.43 E-value=60 Score=24.69 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=40.5
Q ss_pred HHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011902 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+.+.+.|+..+ .--..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 16 ~~l~~~g~r~T---~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNS---KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CH---HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCC---HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34556666542 2334455555566666678888888877776777778777788888877554
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=49.76 E-value=69 Score=27.33 Aligned_cols=78 Identities=9% Similarity=0.043 Sum_probs=33.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 011902 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 184 (475)
...|+.+.+..++ +.|..++...-.+.+...+..|+.+-+..+++.-...+. +|..-++. +...+..|+.+-+.
T Consensus 39 ~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~-L~~A~~~g~~~~v~ 112 (285)
T 3kea_A 39 IADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQ-FDDKGNTA-LYYAVDSGNMQTVK 112 (285)
T ss_dssp HHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTC-CCTTSCCH-HHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcH-HHHHHHcCCHHHHH
Confidence 4456655444444 345444332223345555566766555555543221111 12222222 33344566655544
Q ss_pred HHHH
Q 011902 185 ELMK 188 (475)
Q Consensus 185 ~~~~ 188 (475)
.+++
T Consensus 113 ~Ll~ 116 (285)
T 3kea_A 113 LFVK 116 (285)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.97 E-value=59 Score=25.60 Aligned_cols=14 Identities=7% Similarity=0.294 Sum_probs=5.9
Q ss_pred HHHHHHHHhCCCCC
Q 011902 326 YQLIDKVVAGGSVS 339 (475)
Q Consensus 326 ~~~~~~~~~~~~~~ 339 (475)
.++++.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 33444444444433
No 302
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=48.79 E-value=87 Score=24.66 Aligned_cols=26 Identities=4% Similarity=-0.318 Sum_probs=11.9
Q ss_pred HHHhcCChhhHHHHHHHhccCCCCCC
Q 011902 173 LFCEKGDMIAADELMKGMGLIDLYPD 198 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~~ 198 (475)
..+..|+.+.-.++.+-+.+.|..++
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33444544444444444444554443
No 303
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.72 E-value=1.4e+02 Score=26.40 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc
Q 011902 132 MKVIFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 132 ~~~ll~~~~~~~~~~~A~~~~~~~~~ 157 (475)
...++.-|...|+.++|...++++..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 34466667777888888888877753
No 304
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=46.64 E-value=1e+02 Score=24.17 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=74.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHh-cCC
Q 011902 282 CGKGMMKEALGILDRMEALGCAPNR-VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG---CYSSLVVELVR-TKR 356 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~-~g~ 356 (475)
++.|+.+....++.. +..... ..-.+.+...+..|+.+.-.++.+.+++.|..++.. -++.|..++.. ..+
T Consensus 14 a~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~ 89 (186)
T 3t8k_A 14 AMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGND 89 (186)
T ss_dssp HHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc
Confidence 556777765555432 211111 111233445556677666667777777777666432 22333322222 234
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCH-HHHHHHHHHHHH-cCCCCCC-chhhHHHHHHHHHhcCCHH
Q 011902 357 LKEAEKLFSKMLASGVKPDGLA---CSVMIRELCLGGQV-LEGFCLYEDIEK-IGFLSSV-DSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~-~~a~~~~~~~~~-~~~~~~~-~~~~~~~l~~~~~~~g~~~ 430 (475)
.....++.+.+++.|..++... .+..+...+..+.. ..-..+++.+.+ .|..+.. |..-.+.+ ....+.|+.+
T Consensus 90 ~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL-~~A~~~~~~~ 168 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL-EFVKRCQKPI 168 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH-HHHHTTTCHH
T ss_pred hhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH-HHHHHcCCHH
Confidence 4455667777777777665422 20222222223322 344556677777 6653311 11112222 2334556554
Q ss_pred HHHHHHHHHHHcCC
Q 011902 431 EAAKLARFMLKKRI 444 (475)
Q Consensus 431 ~A~~~~~~m~~~~~ 444 (475)
-..-+.+...+.++
T Consensus 169 ~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 169 ALKMMEDYIKKYNL 182 (186)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 44333444444443
No 305
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=46.05 E-value=1.4e+02 Score=25.43 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=41.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011902 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
....+.|++++|++....-++.. |.|...-..+++.+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567788888888777777653 566777777888888888888888877777664
No 306
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.76 E-value=54 Score=24.74 Aligned_cols=63 Identities=14% Similarity=0.064 Sum_probs=39.9
Q ss_pred HHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011902 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+.+.+.|+..++ .-..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 11 ~~l~~~g~r~T~---qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITP---QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCH---HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCH---HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 345566665422 233445555555556667778877777776677777777777777777544
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.71 E-value=15 Score=31.01 Aligned_cols=16 Identities=6% Similarity=0.214 Sum_probs=7.5
Q ss_pred HhcCCHHHHHHHHHHH
Q 011902 352 VRTKRLKEAEKLFSKM 367 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m 367 (475)
+..|+.+-+..++++-
T Consensus 233 ~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 233 AKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhC
Confidence 3445555444444443
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.55 E-value=86 Score=23.11 Aligned_cols=108 Identities=13% Similarity=0.056 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011902 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ--VLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (475)
....++.-|...|+.++|.+.++++..-.. -.......+..++-+.++ .+....++..+.+.|+.+ -..+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is------~~q~~ 81 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT------IDQMK 81 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC------HHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC------HHHHH
Confidence 456788889999999999999999841110 112333444445555432 356777788887776643 23333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011902 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (475)
.++ +...+.+.++.- .+|.-...+..++..+...|-.
T Consensus 82 ~Gf------~~v~~~l~Dl~l-DiP~a~~~l~~~v~~ai~~g~l 118 (129)
T 2nsz_A 82 RGY------ERIYNEIPDINL-DVPHSYSVLERFVEECFQAGII 118 (129)
T ss_dssp HHH------HHHHHHHHHHHH-HSTTHHHHHHHHHHHHHHTTCS
T ss_pred HHH------HHHHhhChHhhc-CccchHHHHHHHHHHHHHCCCC
Confidence 332 222333333322 2233344455666666555543
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=44.15 E-value=2e+02 Score=26.76 Aligned_cols=95 Identities=9% Similarity=-0.029 Sum_probs=47.9
Q ss_pred cCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhH
Q 011902 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202 (475)
Q Consensus 123 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 202 (475)
.|.+--...|..-.+.+...|++++|..+-..-+. |+-.+..|.+.+-.+=...|+..-.+.+|..+.+.| ..+..--
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ES 432 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYES 432 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHH
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHh
Confidence 34444444455555566666666666666655543 344455555554444344455555556666555544 3333333
Q ss_pred HHHHHHHHhcCCHHHHH
Q 011902 203 VSMIKGFCNAGRLEDAC 219 (475)
Q Consensus 203 ~~li~~~~~~g~~~~a~ 219 (475)
--+++.-...|+.+-..
T Consensus 433 lEl~r~vL~q~r~~lle 449 (494)
T 1bpo_A 433 LELCRPVLQQGRKQLLE 449 (494)
T ss_dssp HHHHHHHHHTTCHHHHH
T ss_pred hHHhHHHHhccHHHHHH
Confidence 33444444455544333
No 310
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.89 E-value=82 Score=25.47 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=5.9
Q ss_pred HhcCChhhHHHHHH
Q 011902 175 CEKGDMIAADELMK 188 (475)
Q Consensus 175 ~~~g~~~~a~~~~~ 188 (475)
++.|+.+....+++
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 33444444444443
No 311
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.71 E-value=1.1e+02 Score=23.63 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=31.8
Q ss_pred hcCChhhHHHHHHHhccCCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 011902 176 EKGDMIAADELMKGMGLIDLYP--DIITYVSMIK-G-----FCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 227 (475)
..|++-+|.+++++.-...-.+ +...|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777776544344 4455666665 2 2346777777777776654
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.57 E-value=69 Score=24.15 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=25.9
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011902 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 390 (475)
+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34445444332 23344444444444445555555554443444444444444444444
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.55 E-value=1.1e+02 Score=23.68 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 011902 115 DVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFD 159 (475)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 159 (475)
++|..|..+|+-.. ...|......+-..|++.+|.++|+.-++.+
T Consensus 81 ~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 81 DMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444444443222 2233333334444445555555554444443
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=43.23 E-value=56 Score=24.32 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=38.3
Q ss_pred HHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011902 401 DIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.+.+.|.+.++ .-..++..+...+ ..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 8 ~l~~~g~r~T~---qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTL---PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCH---HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCH---HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34556655422 2334455555554 55667778877777776677777777777777777544
No 315
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=42.68 E-value=76 Score=22.02 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhc-----ccCCCCCCHhhHHHH
Q 011902 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM-----PEFDLRPDTIIYNNV 170 (475)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~l 170 (475)
-.+.++.+++..-|+.|+..+...++..|...+. + +.++.++. ...|..|+....+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 3456677777777888888888888888877764 2 33332221 223556666555443
No 316
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=42.42 E-value=1.1e+02 Score=23.40 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011902 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 358 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
+.+..++..+.+.|.--|...-...+....+.| .....+-.++..+|+
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI 94 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC
Confidence 444455555555554444433344444443322 123345555555554
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.60 E-value=56 Score=26.87 Aligned_cols=74 Identities=11% Similarity=0.005 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC
Q 011902 87 QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163 (475)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 163 (475)
...|+.++.-...-+..... .+...++|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 110 ~~rYknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 110 NPLYKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CGGGTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cccccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34555666544443433332 3466688889988887544 45667777788889999999999999887665654
No 318
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=40.10 E-value=1.8e+02 Score=25.16 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=24.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHh---HHHHHHHHHhcCCHHHHHHHHH
Q 011902 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM---MKVIFNLCEKARLANEAMWVLR 153 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~A~~~~~ 153 (475)
+-...+.|+.+.+..+++ .|..++... -.+-+...+..|+.+-+.-+++
T Consensus 29 L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~ 80 (337)
T 4g8k_A 29 LIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 80 (337)
T ss_dssp HHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 334455677665555554 455554221 1123444556676655544444
No 319
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.07 E-value=72 Score=26.24 Aligned_cols=52 Identities=8% Similarity=-0.150 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011902 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 446 (475)
....+|..|..+|+-. .-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQ-ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCST-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555554422 234445555555555555555555555555554444
No 320
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.54 E-value=79 Score=20.76 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=38.1
Q ss_pred HHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011902 401 DIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.+.+.|+.. +. .-..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-..
T Consensus 7 ~l~~~g~~~--t~-~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 7 ALKKAGLKV--TL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHTTCCC--CH-HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCc--CH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 355566544 22 2234455555443 44556777777777776677778777788887777544
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.48 E-value=68 Score=23.83 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011902 332 VVAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 390 (475)
+.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445544333 333444444443 44455556666555544444444444444444444
No 322
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.43 E-value=73 Score=24.23 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=27.1
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011902 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 390 (475)
+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34455554322 33444455444444556666666655444444444444444444444
No 323
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=39.23 E-value=1.9e+02 Score=25.06 Aligned_cols=21 Identities=5% Similarity=-0.075 Sum_probs=11.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 011902 134 VIFNLCEKARLANEAMWVLRK 154 (475)
Q Consensus 134 ~ll~~~~~~~~~~~A~~~~~~ 154 (475)
..+...++.|+++-+..+++.
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHC
Confidence 344445566776665555553
No 324
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=38.92 E-value=1.2e+02 Score=24.43 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=10.4
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011902 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
+..|+.+-+.++++.+++.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34555555555555555554
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.72 E-value=80 Score=24.40 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=35.7
Q ss_pred HHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHh
Q 011902 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK--RIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+.+.|++.++ --..++..+...++.-.|.++++.+.+. +...+..|...-++.+.+.|-..
T Consensus 24 L~~~g~r~T~---qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 24 LRQGGLKYTK---QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHTCCCCH---HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCH---HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4445554421 2344455555555566677777777666 55566666666677777766543
No 326
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.72 E-value=65 Score=24.49 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=39.1
Q ss_pred HHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011902 401 DIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.+.+.|+..++ .-..++..+...+ ..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 7 ~l~~~g~r~T~---qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTL---PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCH---HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 45566665422 2334445554444 55567788888877776777777777777777777554
No 327
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=38.42 E-value=61 Score=26.44 Aligned_cols=18 Identities=6% Similarity=-0.014 Sum_probs=9.4
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011902 352 VRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 352 ~~~g~~~~a~~~~~~m~~ 369 (475)
...|+.+.+.++.+.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 345555555555555543
No 328
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=36.57 E-value=56 Score=24.71 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=38.9
Q ss_pred HHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011902 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+.+.+.|+++++ .-..++..+...+ .-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 8 ~~L~~~g~r~T~---qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTP---QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCH---HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCH---HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 345556665432 2233444444445 5567888888877776677777777778787777543
No 329
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=36.50 E-value=68 Score=24.20 Aligned_cols=56 Identities=5% Similarity=-0.062 Sum_probs=23.9
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011902 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 333 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 390 (475)
.+.|..++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 11 ~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 11 RQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3444444332 233333343333 3345555555554444444444333344444443
No 330
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.43 E-value=78 Score=24.19 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 011902 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSVMIRELCLGGQ--VLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~ 409 (475)
....++.-|...|+.++|.+.++++. .|. ......+..++-+.++ .+.+..++..+.+.++.+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~----~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC----CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 46778889999999999999999984 232 2333444445554332 455777787887776653
No 331
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=36.34 E-value=1.8e+02 Score=23.85 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011902 359 EAEKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 359 ~a~~~~~~m~~~~~~p~~~~~~~ll~~ 385 (475)
.+..++..+.+.|.--|...-...++.
T Consensus 94 ~i~~vl~~L~~~g~ldD~rfA~~~v~~ 120 (221)
T 3d5l_A 94 FVEPILKKLRGQQLIDDHAYAASYVRT 120 (221)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 334444444444444333333333333
No 332
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=36.02 E-value=55 Score=20.75 Aligned_cols=41 Identities=10% Similarity=-0.073 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011902 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 416 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
++.++..+++..-.+.++..++++++.| ..+...|-.-.+.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~ 45 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRE 45 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 3344444444444444445555555444 3444444333333
No 333
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=35.98 E-value=38 Score=21.04 Aligned_cols=35 Identities=23% Similarity=0.112 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCCH
Q 011902 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHL-KKSGDE 464 (475)
Q Consensus 430 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~ 464 (475)
++|.+.|.+|++..-.++.-+|..+++.+ ++..++
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcc
Confidence 45555665555543234445566666555 444443
No 334
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.93 E-value=92 Score=20.42 Aligned_cols=9 Identities=22% Similarity=0.789 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 011902 361 EKLFSKMLA 369 (475)
Q Consensus 361 ~~~~~~m~~ 369 (475)
.++++.+.+
T Consensus 37 ~el~~~l~~ 45 (83)
T 2fu4_A 37 EDLYKRLID 45 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 335
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.75 E-value=1.2e+02 Score=24.31 Aligned_cols=181 Identities=14% Similarity=0.170 Sum_probs=85.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHH
Q 011902 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR---VTISTLIKGF 316 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~ 316 (475)
.+...++.|+.+....++..-... ...++..-++.+ ...+..|+.+- ++.+.+.|..++. ...+.+ ...
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L-~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A 80 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSL--ATRTDQDSRTAL-HWACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPL-HIA 80 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGG--GGCCCTTSCCHH-HHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHH-HHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhh--hhcCCCCCCCHH-HHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHH-HHH
Confidence 466677888988888777653321 012233333333 34455666544 4444455554432 222333 334
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcC
Q 011902 317 CVEGNLDEAYQLIDKVVAGGSVSSG---GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL---ACSVMIRELCLGG 390 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g 390 (475)
+..|+.+ +++.+.+.|..++. .-.+ .+...+..|+.+-+..+ .+.|..++.. ..+.+. ..+..|
T Consensus 81 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~L~-~A~~~~ 150 (231)
T 3aji_A 81 ASAGXDE----IVKALLVKGAHVNAVNQNGCT-PLHYAASKNRHEIAVML----LEGGANPDAKDHYDATAMH-RAAAKG 150 (231)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHH-HHHHHT
T ss_pred HHcCHHH----HHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCcHHH-HHHHcC
Confidence 4566664 44445555554432 2223 33344566776644433 4445544322 222333 334556
Q ss_pred CHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011902 391 QVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
+.+-+ +.+.+.|..+.. +..-.+. +...++.|+.+ +++.+++.|..++
T Consensus 151 ~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 151 NLKMV----HILLFYKASTNIQDTEGNTP-LHLACDEERVE----EAKFLVTQGASIY 199 (231)
T ss_dssp CHHHH----HHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred CHHHH----HHHHhcCCCccccCCCCCCH-HHHHHHCCCHH----HHHHHHHCCCCCC
Confidence 66544 444455543311 2222222 33345666654 4444555665554
No 336
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.00 E-value=1.5e+02 Score=22.60 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 011902 238 SALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
+.++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555666666666666666653
No 337
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.77 E-value=1.6e+02 Score=22.84 Aligned_cols=53 Identities=6% Similarity=-0.063 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011902 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 448 (475)
...+|..|..+|+-. .-...|......+-..|++.+|.++|+.-++.+-.|..
T Consensus 79 p~~if~~L~~~~IG~-~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGV-SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSST-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 445566666655432 23445555555555666666666666666665544443
No 338
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=34.54 E-value=1.7e+02 Score=23.03 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=28.1
Q ss_pred hHHHHHH-HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCC
Q 011902 131 MMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194 (475)
Q Consensus 131 ~~~~ll~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 194 (475)
-|..++. .+--.|.+.+++-++...-. .+..-|..| +|-+.+++..|...++.+....
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lNT----~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~k 92 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLNT----CTSKYYESL--CYKKKKDYKKAIKSLESILEGK 92 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCCB----HHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcch----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcc
Confidence 3444443 23345666666665543321 122222222 3445666667766666665433
No 339
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=34.37 E-value=4e+02 Score=27.41 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=88.9
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHH
Q 011902 203 VSMIKGFCNAGR---LEDACGLFKVMKRHG----CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT 275 (475)
Q Consensus 203 ~~li~~~~~~g~---~~~a~~~~~~m~~~g----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 275 (475)
..++...|..|+ .+.|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++..... .+..--.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~-----~~~~ek~ 762 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA-----QLVNEAD 762 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC-----CSHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc-----CCHHHHH
Confidence 345666777777 456778888776532 455543 23344445667777777777777763 3444556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh---CCCCCChhhHHHHHHH
Q 011902 276 SVIQIFCGKGMMKEALGILDRMEALG-CAPNRVTISTLIKGFCVEG-NLDEAYQLIDKVVA---GGSVSSGGCYSSLVVE 350 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~ 350 (475)
.++.+++...+.....++++...... +++. . ...++.+..... ..+.|.+.+.+=.+ .........+..++..
T Consensus 763 ~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d-~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~ 840 (909)
T 4fke_A 763 KLRSALACSNEVWLLNRYLGYTLNPDLIRKQ-D-ATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQG 840 (909)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHTTCTTTSCGG-G-HHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhCCCCCchh-h-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 78888888889888888887766433 3332 2 223334443322 23344444433211 1122233456777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 011902 351 LVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 351 ~~~~g~~~~a~~~~~~m~~ 369 (475)
....-.-++-.+-++...+
T Consensus 841 ~~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 841 VTRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HHTTCCSHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHh
Confidence 7665444444445555544
No 340
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.29 E-value=79 Score=24.02 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011902 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 357 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 390 (475)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344455555544433334434333334444443
No 341
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.23 E-value=49 Score=24.43 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011902 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 344555555556677888888877776777777777788887777544
No 342
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.26 E-value=1.7e+02 Score=22.63 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 011902 319 EGNLDEAYQLIDKVVAGGSVS--SGGCYSSLVV-E-----LVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 369 (475)
.|++-+|-++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777776654444 3445566665 1 2346777777777776654
No 343
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.19 E-value=1.9e+02 Score=23.26 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=38.0
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 011902 347 LVVELV---RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-----VLEGFCLYEDIEKIGF 407 (475)
Q Consensus 347 li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~ 407 (475)
+|+++. +..+++.|+-.+.+|++.| .|....-..++.+.-.-|. +..|...++.....|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 444443 4578888888888888888 6655555555555555443 3345556666666674
No 344
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=32.56 E-value=1.9e+02 Score=23.00 Aligned_cols=181 Identities=8% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011902 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS--TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
.+...+..|+ .++++.+.+.|..++..... ..+...+..|+.+-+..+++.-...-...+..-.+.+..+....
T Consensus 28 ~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 103 (223)
T 2f8y_A 28 ALHLAARYSR----SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103 (223)
T ss_dssp HHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred hHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhC
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011902 355 KRLKEAEKLFSKMLASGVKPDGLA--CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 355 g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 432 (475)
. .++++.+.+.|..++... -...+...+..|+ .++.+.+.+.|..+......-.+.+...++.|+.
T Consensus 104 ~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--- 171 (223)
T 2f8y_A 104 V-----EGMLEDLINSHADVNAVDDLGKSALHWAAAVNN----VDAAVVLLKNGANKDMQNNREETPLFLAAREGSY--- 171 (223)
T ss_dssp C-----HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH---
T ss_pred c-----HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH---
Q ss_pred HHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHhHHhhccccC
Q 011902 433 AKLARFMLKKRIWLQGPYVD--KIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~l~~~~ 474 (475)
++++.+++.|..++..... ..+....+.|..+.+.-+++.+
T Consensus 172 -~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g 214 (223)
T 2f8y_A 172 -ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214 (223)
T ss_dssp -HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred -HHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcC
No 345
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.31 E-value=49 Score=24.81 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhH
Q 011902 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466 (475)
Q Consensus 417 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (475)
..++..+...++.-.|.++++.+.+.+...+..|....++.+.+.|-...
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 44555555555666788888888877767777887777888888775543
No 346
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=32.22 E-value=99 Score=25.08 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=26.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 349 VELVRTKRLKEAEKLFSKMLASGVKPDGL---ACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 349 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~ 404 (475)
...++.|+.+-+. .+.+.|..++.. -.+ .+...+..|+...+.++.+.+.+
T Consensus 182 ~~A~~~~~~~~v~----~Ll~~gad~~~~d~~g~t-~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 182 HIAARENRYDCVV----LFLSRDSDVTLKNKEGET-PLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHTTCHHHHH----HHHTTTCCTTCCCTTSCC-HHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHH----HHHHcCCCCCccCCCCCC-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344566655433 333445444321 122 23334667777888888777765
No 347
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.82 E-value=3.2e+02 Score=28.33 Aligned_cols=110 Identities=12% Similarity=0.053 Sum_probs=61.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------
Q 011902 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS----------------- 409 (475)
Q Consensus 347 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----------------- 409 (475)
++..+...|..+-|.++..- ++-+...--.+.++|...|++++|...|+++-. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 45555566666654443221 122333223345566777777777777765431 1110
Q ss_pred ----CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcC
Q 011902 410 ----SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP----YVDKIVEHLKKSG 462 (475)
Q Consensus 410 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~g 462 (475)
......|..++..+-+.+-++.+.++.+.+++.--..|.. .+..++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0022367777888888888888888888888653233333 4555555554443
No 348
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.73 E-value=1.5e+02 Score=21.72 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 011902 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM--MKEALGILDRMEALGCAP 304 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p 304 (475)
..++.-|...|+.++|...++++.... -....+...+..++-+.+. .+.+..++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~---f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPH---FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG---GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCc---cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 445556666666666666666654200 0112223333333333321 244555555555555443
No 349
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.00 E-value=88 Score=23.26 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=5.7
Q ss_pred HhcCCHhHHhhc
Q 011902 459 KKSGDEELITNL 470 (475)
Q Consensus 459 ~~~g~~~~a~~l 470 (475)
.+.|+.+.+.-+
T Consensus 141 ~~~~~~~~v~~L 152 (156)
T 1bd8_A 141 LQRGAQDLVDIL 152 (156)
T ss_dssp HHSCCHHHHHHH
T ss_pred HHcCcHHHHHHH
Confidence 344555544443
No 350
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.85 E-value=2.1e+02 Score=22.96 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=9.5
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 011902 317 CVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~ 336 (475)
+..|+.+-+..+++.+.+.|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhcC
Confidence 34445554444444444444
No 351
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=30.09 E-value=61 Score=26.20 Aligned_cols=54 Identities=11% Similarity=-0.035 Sum_probs=26.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011902 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
+...++.|+.+.+..+++.-... ....+..-++. +...+..|+.+ +++.+.+.|
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~~ 59 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSL--LLQKDQDGRIP-LHWSVSFQAHE----ITSFLLSKM 59 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGG--TTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHhcCccc--cccCCCCCCCH-HHHHHHcCCHH----HHHHHHhcc
Confidence 45566778877766666543321 01123323333 33345556654 344444555
No 352
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.72 E-value=2.1e+02 Score=22.63 Aligned_cols=154 Identities=15% Similarity=0.031 Sum_probs=79.7
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHH
Q 011902 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
++...-...+..+.+.+.. .+...+..+.. .++...-...+.++.+.++.+....+.+ +.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHHHHHHH
Confidence 4555555556666666653 33333333333 2466666666667777776444333333 332 35666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011902 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 207 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
.++.+.++.+ +...+..+.+ .++..+-...+.++.+.|+.+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK-----DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-----CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-----CCCHHHHHHHHHHHHHhCc
Confidence 6666666643 3333333443 346666666666666666543 3444444443 2455555555666666554
Q ss_pred HHHHHHHHHHHHH
Q 011902 287 MKEALGILDRMEA 299 (475)
Q Consensus 287 ~~~a~~~~~~m~~ 299 (475)
.++...+..+.+
T Consensus 173 -~~~~~~L~~~l~ 184 (211)
T 3ltm_A 173 -ERVRAAMEKLAE 184 (211)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHh
Confidence 334444444443
No 353
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.47 E-value=1.7e+02 Score=27.67 Aligned_cols=123 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 011902 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN-------VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN- 305 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~- 305 (475)
...+|.+++.|...+.++.|.++..+..- +.+ ..-+--+...+.-.+++.+|.+.+......-....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f-----P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY-----PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS-----CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC-----CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011902 306 -----RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 306 -----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 366 (475)
...+..++-+-.-.|++.+-.-+-..-.+....| |..|..++ +.|++++-...++.
T Consensus 306 a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~p----Y~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 306 SLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLP----YYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHH----HHHHHHHH-HHTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHH----HHHHHHHH-HcCCHHHHHHHHHH
No 354
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.40 E-value=3.5e+02 Score=25.20 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 011902 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 213 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 292 (475)
.+.+-|.++-. +.|++--...|..-.+.+...|++++|.++--...+ |+-.+..|.+.+-..-...|+..-.+.
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~---giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK---GILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG---GSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc---ccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 44555544432 344444445566666667777777777776654443 233455555544443334455555666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011902 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEA 325 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 325 (475)
+|..+.+.| ..+..----+++.....|+.+-.
T Consensus 417 YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~ll 448 (494)
T 1bpo_A 417 YFGILLDQG-QLNKYESLELCRPVLQQGRKQLL 448 (494)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccC-ccchHHhhHHhHHHHhccHHHHH
Confidence 666666554 23333223334444444444333
No 355
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.26 E-value=2.1e+02 Score=22.43 Aligned_cols=122 Identities=15% Similarity=0.059 Sum_probs=63.0
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011902 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
++...-...+.++.+.|+.+....+.+ +.. .++..+-...+.++.+.++.+ +...+..+.. .++..+-...+
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 128 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAA 128 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 455555556666666666544433333 332 356666666666666666643 3333333333 34555556666
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.++.+.++.+ +...+..+.. .++..+-...+.++.+.|.. ++...+..+.
T Consensus 129 ~aL~~~~~~~-~~~~L~~~l~-----d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 129 FALGEIGDER-AVEPLIKALK-----DEDGWVRQSAADALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp HHHHHHTCGG-GHHHHHHHTT-----CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHH
T ss_pred HHHHHhCCHH-HHHHHHHHHc-----CCCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 6666666533 3344444443 24555555556666665543 3444444444
No 356
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.66 E-value=1.4e+02 Score=22.93 Aligned_cols=44 Identities=14% Similarity=0.024 Sum_probs=19.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc--CCccCHHhHHHHHHHHHhcC
Q 011902 100 ACEMSRIKQNPSIIIDVVEAYKEE--GCVVSVKMMKVIFNLCEKAR 143 (475)
Q Consensus 100 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~ 143 (475)
+++.+...+.+-.|.++++.+.+. +...+..|.--.++.+.+.|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444455555555444 33344433333344444444
No 357
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.07 E-value=3.6e+02 Score=24.89 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHHhc---C---CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHHHh
Q 011902 249 SMERALELLGEMEKE---G---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-A---PNRVTISTLIKGFCV 318 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~---~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~---p~~~~~~~li~~~~~ 318 (475)
..++...++...... + .++..+......++.. ..|+..++..+++.+..... . ....+...+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v------ 237 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELL------ 237 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHH------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHH------
Confidence 456667777776653 1 1123344555555544 46888888888877764321 0 011222211
Q ss_pred cCCHHHHHHHHHHHHhCCC-C--CChhhHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 011902 319 EGNLDEAYQLIDKVVAGGS-V--SSGGCYSSLVVELV---RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ- 391 (475)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~-~--~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~- 391 (475)
++...... . .+...+..++.++. +.++.+.|+..+.+|.+.|..|....-..+..+.-.-|.
T Consensus 238 -----------~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 238 -----------TEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp -----------HHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred -----------HHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 12221111 0 01111223444443 457999999999999999887766555555556555553
Q ss_pred ----HHHHHHHHHHHHHcCC
Q 011902 392 ----VLEGFCLYEDIEKIGF 407 (475)
Q Consensus 392 ----~~~a~~~~~~~~~~~~ 407 (475)
...|...++.....|.
T Consensus 307 ~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 307 DPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp CTHHHHHHHHHHHHHHHSCH
T ss_pred ChhHHHHHHHHHHHHHHhCC
Confidence 3345566666666663
No 358
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.00 E-value=1.2e+02 Score=26.52 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=13.9
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 011902 316 FCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~ 334 (475)
+...|++++|...|+.++.
T Consensus 112 ~~t~gKf~eAl~~Fr~iL~ 130 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSILL 130 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 3466888888888877765
No 359
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.76 E-value=2.4e+02 Score=22.70 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=17.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011902 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 212 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
..|.+.|+-.+-+|.+.| .|.-..-..++-+.-..|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 345555555555555555 443333333444444433
No 360
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.60 E-value=1.2e+02 Score=19.22 Aligned_cols=45 Identities=7% Similarity=0.041 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhc
Q 011902 97 YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142 (475)
Q Consensus 97 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 142 (475)
++.+++..+...-.+.++..++...+.| ..+..+|-.-.+..++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4555555555556677777777777766 55666666555555443
No 361
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=27.44 E-value=1.1e+02 Score=23.13 Aligned_cols=121 Identities=13% Similarity=0.063 Sum_probs=56.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhc
Q 011902 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL---ACSVMIRELCLG 389 (475)
Q Consensus 313 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~ 389 (475)
+...++.|+.+....+++.-...-...+..-++ .+...+..|+.+-+ +.+.+.|..++.. -.+.|.. .+..
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~-A~~~ 85 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSVV----EYLLQHGADVHAKDKGGLVPLHN-ACSY 85 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHH-HHHT
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCC-HHHHHHHcChHHHH----HHHHhcCCCCCccCCCCCCHHHH-HHHc
Confidence 344567788877766654321111111122123 34444567776544 4444556555432 2234433 3556
Q ss_pred CCHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011902 390 GQVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 448 (475)
|+.+- .+.+.+.|..+.. +..-++.+ ...+..|+.+ +++.+++.|..++.
T Consensus 86 ~~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~~ 136 (165)
T 3twr_A 86 GHYEV----AELLVKHGAVVNVADLWKFTPL-HEAAAKGKYE----ICKLLLQHGADPTK 136 (165)
T ss_dssp TCHHH----HHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred CcHHH----HHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCcc
Confidence 77664 4455556554321 22222333 3345667665 34445556655543
No 362
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.74 E-value=3.6e+02 Score=24.38 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=37.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 312 LIKGFCVEGNLDEAYQLIDKVVAGG----------------SVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~~----------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 368 (475)
++..+....+.+++.+.++.+...- ...-......+...|...|+.++|..++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4556667778888888888764321 01112344556667778888888888887775
No 363
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.18 E-value=1.3e+02 Score=24.73 Aligned_cols=16 Identities=0% Similarity=-0.093 Sum_probs=8.5
Q ss_pred HHhcCCHHHHHHHHHH
Q 011902 423 LCRKNHSVEAAKLARF 438 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~ 438 (475)
.++.|+.+-+.-+++.
T Consensus 228 A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 228 AAKEGKIEIFRHILQR 243 (256)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhC
Confidence 3456666555555444
No 364
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.00 E-value=2.7e+02 Score=22.35 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCC
Q 011902 340 SGGCYSSLVVELVRT---KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-----VLEGFCLYEDIEKIGFLSSV 411 (475)
Q Consensus 340 ~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 411 (475)
+.....-+|+++.+. .+++.|+-.+.+|++.|-.|....-..++.+.-.-|. +..|...++.....|. +.
T Consensus 3 ~Gd~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~--PE 80 (201)
T 3bge_A 3 LGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA--YE 80 (201)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH--HH
T ss_pred CchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC--cH
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011902 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 412 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 441 (475)
-.......+.-++..-+...+...++.+++
T Consensus 81 ~~i~LaqaviyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 81 GERAIAQAIIYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHHHH
No 365
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=24.77 E-value=87 Score=23.94 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=9.4
Q ss_pred chHHHHHHhhcCCCcHHHhhhh
Q 011902 31 PAERFYTHLQKNPNNIEKTLAT 52 (475)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~~l~~ 52 (475)
|...+.+.+.+...+++.+..+
T Consensus 36 Pv~DFk~lL~~~~~~~~~A~~q 57 (152)
T 1rw2_A 36 PAENFRVLVKQKKASFEEASNQ 57 (152)
T ss_dssp TTHHHHHHHHSSSSCHHHHHHH
T ss_pred cHHHHHHHHHcCchhHHHHHHH
Confidence 4444444444433334443333
No 366
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=24.54 E-value=2.4e+02 Score=21.64 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=12.3
Q ss_pred ChhhHHHHHHHHHhcCC-HhHHhhcc
Q 011902 447 QGPYVDKIVEHLKKSGD-EELITNLP 471 (475)
Q Consensus 447 ~~~~~~~l~~~~~~~g~-~~~a~~l~ 471 (475)
+......++..+.+.|- .+.+..++
T Consensus 131 ~~~~k~K~~~~L~rrGF~~~~I~~~l 156 (162)
T 3dfg_A 131 DLAQRRKAADLLARRGFDGNSIRLAT 156 (162)
T ss_dssp SHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 33445555666666663 33344433
No 367
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=24.21 E-value=2.4e+02 Score=22.36 Aligned_cols=15 Identities=0% Similarity=0.078 Sum_probs=7.6
Q ss_pred HhcCChhHHHHHHHH
Q 011902 105 RIKQNPSIIIDVVEA 119 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~ 119 (475)
...|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 10 CMENEFFKVQELLHS 24 (228)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhc
Confidence 444555555555543
No 368
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=24.14 E-value=47 Score=24.17 Aligned_cols=52 Identities=6% Similarity=-0.145 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011902 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 379 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 435 (475)
|.-.|...+..++.+-|.++++-+++.| +...|.+++..|...=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g-----~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE-----KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC-----SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----chHHHHHHHHHHHhccChHHHHHH
Confidence 4445566667778888888887777766 566777777777777777777665
No 369
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=23.35 E-value=2.4e+02 Score=21.19 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=8.9
Q ss_pred HHHHhcCCHhHHhhccc
Q 011902 456 EHLKKSGDEELITNLPK 472 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l~~ 472 (475)
....+.|+.+.+.-+.+
T Consensus 151 ~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 151 DISIDNGNEDLAEILQK 167 (169)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 33445566665555444
No 370
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.86 E-value=3.1e+02 Score=22.27 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=36.0
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 011902 347 LVVELV---RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-----VLEGFCLYEDIEKIGF 407 (475)
Q Consensus 347 li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~ 407 (475)
+|+++. +..+++.|+-.+.+|++.|-.|....-..++.+.-.-|. +..|...++.....|.
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 444443 446778888888888777766655555555555444442 3345555666666664
No 371
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.36 E-value=1.5e+02 Score=20.47 Aligned_cols=35 Identities=26% Similarity=0.152 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 011902 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 359 (475)
..+.|.++++.+..+|.. +|..++.++...|+..-
T Consensus 52 ~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHHH
Confidence 455555555555555433 25555555554454443
No 372
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=22.20 E-value=3.7e+02 Score=23.01 Aligned_cols=218 Identities=12% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHH
Q 011902 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS--TLIKG 315 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~ 315 (475)
...+...++.|+.+....++..... .--..|..-.+.+..+..... .++++.+.+.|..++..... +.+..
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 97 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNV--NCHASDGRKSTPLHLAAGYNR-----VRIVQLLLQHGADVHAKDKGGLVPLHN 97 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTT--TCCCSSTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCC--CcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCccCCCCCcHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------------------
Q 011902 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYS--SLVVELVRTKRLKEAEKLFSKMLASGVKPD------------------ 375 (475)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------------------ 375 (475)
.+..|+.+ +++.+.+.|..++..... ..+...+..|+ .++.+.+.+.|..|+
T Consensus 98 A~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~ 169 (351)
T 3utm_A 98 ACSYGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNR----VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPEL 169 (351)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHH
T ss_pred HHHCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCccccCCCCcchHHHhhhhh
Q ss_pred ------HHHHHHHHHHHHhcCCHH-------------------------------HHHHHHHHHHHcCCCCCCchhhHHH
Q 011902 376 ------GLACSVMIRELCLGGQVL-------------------------------EGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 376 ------~~~~~~ll~~~~~~g~~~-------------------------------~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
......++.+....+... .-.++.+.+.+.|..+......-.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 249 (351)
T 3utm_A 170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMT 249 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred HHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCC
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCCHhHHhhccccC
Q 011902 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV--DKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 419 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~l~~~~ 474 (475)
.+...++.|+. ++++.+++.|..++.... ...+......|+.+.+.-+++.|
T Consensus 250 ~L~~A~~~g~~----~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 303 (351)
T 3utm_A 250 PLHVAAERAHN----DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303 (351)
T ss_dssp HHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
No 373
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.19 E-value=97 Score=23.03 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=7.3
Q ss_pred HHhcCCHHHHHHHHHh
Q 011902 139 CEKARLANEAMWVLRK 154 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~ 154 (475)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3344444444444444
No 374
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.15 E-value=1.3e+02 Score=26.66 Aligned_cols=216 Identities=13% Similarity=0.005 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011902 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
|..-++. +...+..|+.+-+..+++ .|..+. .+..-++. +...+..|+.+-+.. +.+.|..++...-..
T Consensus 17 d~~g~t~-L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~-L~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEK-IHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTA-LHLACKFGCVDTAKY----LASVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHH-HHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCH-HHHHHHHCCHHHHHH----HHHHCCCCCCBTTBC
T ss_pred CCCCCCH-HHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcH-HHHHHHcCCHHHHHH----HHHCCCCccccCCCC
Confidence 4444444 445556788776665554 332111 22222333 444556677654444 444444343322222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--------------------hhHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 011902 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSG--------------------GCYSSLVVELVRTK--RLKEAEKLFSKMLA 369 (475)
Q Consensus 312 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~m~~ 369 (475)
.+...+..|+.+-+..+++.....|..++. .-.+.| ...+..| +.+-+..++ +
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~~~v~~Ll----~ 161 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL-HWCVGLGPEYLEMIKILV----Q 161 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHH-HHHHHSCGGGHHHHHHHH----H
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHH-HHHHHcCCchHHHHHHHH----H
Confidence 344456778888877777776665665543 112333 3445566 555444333 3
Q ss_pred CCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011902 370 SGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKIGFL-----SS-VDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 370 ~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 440 (475)
.|..++. .-.+.|..+ +..|+.+-+. .+.+.|.. .. .+..-.+.|. ..+..|+.+ +++.++
T Consensus 162 ~ga~~~~~d~~g~t~L~~A-~~~g~~~~v~----~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll 231 (364)
T 3ljn_A 162 LGASPTAKDKADETPLMRA-MEFRNREALD----LMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWED----VAMRFV 231 (364)
T ss_dssp HTCCTTCCCTTSCCHHHHH-HHTTCHHHHH----HHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHH----HHHHHH
T ss_pred cCCCCcccCCCCCCHHHHH-HHcCCHHHHH----HHHhcccccccccccccCCCCCcHHH-HHHHcCCHH----HHHHHH
Confidence 3555543 223444444 5667766444 44444322 11 1222233333 345667654 444455
Q ss_pred HcCCCCChhhH--HHHHHHHHhcCCHhHHhhcccc
Q 011902 441 KKRIWLQGPYV--DKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 441 ~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
+.|..++.... ...+....+.|+.+.+.-|++.
T Consensus 232 ~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 232 EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 66665543321 1334455667888888877754
No 375
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=21.81 E-value=64 Score=23.50 Aligned_cols=53 Identities=8% Similarity=0.177 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHH
Q 011902 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWV 151 (475)
Q Consensus 96 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 151 (475)
.|...|+..+..++.+.|.++++-+.+.| +.+.|.+.+-.|...=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 35566666677778888888888777766 566677777766666556655554
No 376
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=21.11 E-value=63 Score=23.54 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHhcCCc-cCHHhHHHHHHHH
Q 011902 111 SIIIDVVEAYKEEGCV-VSVKMMKVIFNLC 139 (475)
Q Consensus 111 ~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~ 139 (475)
+.|.+.+..|++.-+. -.+..||..|..+
T Consensus 44 ~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~L 73 (120)
T 1q2z_A 44 MKSIDCIRAFREEAIKFSEEQRFNNFLKAL 73 (120)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 3444444444433222 1445555555533
No 377
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.11 E-value=2.1e+02 Score=21.28 Aligned_cols=15 Identities=13% Similarity=-0.057 Sum_probs=6.8
Q ss_pred HHhcCCHHHHHHHHH
Q 011902 139 CEKARLANEAMWVLR 153 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~ 153 (475)
.++.|+.+....+++
T Consensus 15 A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 15 AAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHTCHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHH
Confidence 334455544444443
No 378
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.03 E-value=2e+02 Score=20.83 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=25.3
Q ss_pred HHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhccc
Q 011902 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 157 (475)
+|+.+....+.|++..--.-|..+...++++.|.++.-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555544443333334456667888888888877654
No 379
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.96 E-value=1.4e+02 Score=21.80 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=3.4
Q ss_pred hHHHHHHHh
Q 011902 182 AADELMKGM 190 (475)
Q Consensus 182 ~a~~~~~~m 190 (475)
.|.++++.+
T Consensus 28 sa~ei~~~l 36 (131)
T 2o03_A 28 SAQELHDEL 36 (131)
T ss_dssp EHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 333333333
No 380
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.91 E-value=3.4e+02 Score=22.02 Aligned_cols=15 Identities=20% Similarity=-0.124 Sum_probs=5.7
Q ss_pred ChhhHHHHHHHhccC
Q 011902 179 DMIAADELMKGMGLI 193 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~ 193 (475)
+.+.|+-++-+|.+.
T Consensus 50 DpDAALywLaRMl~~ 64 (213)
T 3ctd_A 50 DPDATLYWLANMVEA 64 (213)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 333333333333333
No 381
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.62 E-value=7.2e+02 Score=25.71 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHHHHHHHhcC
Q 011902 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSVIQIFCGKG 285 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g 285 (475)
.-|..++..+-+.+.++.+.++-+...+.-..-.+ ....|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36788899999999999999988888763211111 1246788888777655
Done!