Query 011904
Match_columns 475
No_of_seqs 350 out of 1498
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:30:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2442 Uncharacterized conser 100.0 1E-112 2E-117 872.5 31.3 448 17-465 8-462 (541)
2 KOG2443 Uncharacterized conser 100.0 2.3E-50 4.9E-55 400.2 17.2 235 191-459 22-277 (362)
3 PF04258 Peptidase_A22B: Signa 100.0 1.5E-51 3.2E-56 415.7 -0.1 220 244-465 2-244 (298)
4 smart00730 PSN Presenilin, sig 100.0 4.7E-39 1E-43 316.6 13.3 199 248-467 3-206 (249)
5 cd02132 PA_GO-like PA_GO-like: 100.0 7.8E-30 1.7E-34 230.7 16.1 139 46-184 1-139 (139)
6 cd02129 PA_hSPPL_like PA_hSPPL 99.9 3.3E-24 7.1E-29 188.9 11.3 116 47-183 1-119 (120)
7 cd02126 PA_EDEM3_like PA_EDEM3 99.9 9.7E-23 2.1E-27 181.5 12.3 116 66-184 2-126 (126)
8 cd02127 PA_hPAP21_like PA_hPAP 99.9 9.1E-22 2E-26 173.4 12.8 110 70-184 1-116 (118)
9 cd02123 PA_C_RZF_like PA_C-RZF 99.9 3.4E-21 7.3E-26 177.1 14.7 116 60-179 20-142 (153)
10 cd02122 PA_GRAIL_like PA _GRAI 99.9 3.7E-21 8E-26 173.9 12.3 123 54-184 3-138 (138)
11 cd02125 PA_VSR PA_VSR: Proteas 99.8 7.9E-21 1.7E-25 169.5 12.8 112 70-184 1-127 (127)
12 cd04818 PA_subtilisin_1 PA_sub 99.8 1.3E-19 2.7E-24 159.1 12.6 114 67-184 1-118 (118)
13 cd04813 PA_1 PA_1: Protease-as 99.8 1.2E-19 2.6E-24 159.7 10.8 103 66-175 5-110 (117)
14 cd04816 PA_SaNapH_like PA_SaNa 99.8 4.2E-18 9E-23 150.6 12.9 114 67-184 4-122 (122)
15 cd02130 PA_ScAPY_like PA_ScAPY 99.7 2.3E-17 4.9E-22 145.8 13.1 113 62-184 7-122 (122)
16 KOG3920 Uncharacterized conser 99.7 3.5E-18 7.6E-23 153.9 6.5 165 4-188 2-175 (193)
17 KOG4628 Predicted E3 ubiquitin 99.7 3.6E-16 7.8E-21 159.0 15.4 109 63-178 35-151 (348)
18 cd02124 PA_PoS1_like PA_PoS1_l 99.7 1.5E-16 3.2E-21 142.4 10.8 89 90-184 38-129 (129)
19 cd04817 PA_VapT_like PA_VapT_l 99.7 6.8E-16 1.5E-20 139.6 12.8 95 82-180 35-137 (139)
20 PF02225 PA: PA domain; Inter 99.5 1.3E-14 2.9E-19 122.5 6.1 91 82-174 5-101 (101)
21 cd00538 PA PA: Protease-associ 99.5 6.1E-14 1.3E-18 122.8 9.7 94 90-184 27-126 (126)
22 cd02133 PA_C5a_like PA_C5a_lik 99.4 3.7E-12 8.1E-17 115.6 12.7 93 82-184 25-120 (143)
23 cd04819 PA_2 PA_2: Protease-as 99.4 5.5E-12 1.2E-16 112.5 11.5 100 82-183 22-126 (127)
24 cd04815 PA_M28_2 PA_M28_2: Pro 99.3 7E-12 1.5E-16 112.9 8.0 105 80-184 14-134 (134)
25 cd02120 PA_subtilisin_like PA_ 99.2 1.1E-10 2.4E-15 102.9 8.8 83 92-180 36-122 (126)
26 PF06550 DUF1119: Protein of u 99.0 1.2E-09 2.5E-14 108.2 11.1 115 329-456 96-226 (283)
27 cd02128 PA_TfR PA_TfR: Proteas 98.8 9.7E-09 2.1E-13 97.0 8.2 91 82-175 28-154 (183)
28 COG3389 Uncharacterized protei 98.7 5.9E-09 1.3E-13 99.9 1.8 112 333-455 98-222 (277)
29 cd04822 PA_M28_1_3 PA_M28_1_3: 98.3 4.8E-06 1E-10 76.7 10.4 89 82-173 19-131 (151)
30 cd02121 PA_GCPII_like PA_GCPII 98.3 2.7E-06 5.9E-11 82.8 8.4 91 83-176 45-189 (220)
31 cd04814 PA_M28_1 PA_M28_1: Pro 98.3 3.1E-06 6.6E-11 77.2 7.8 57 83-139 20-100 (142)
32 cd04820 PA_M28_1_1 PA_M28_1_1: 98.2 4E-06 8.8E-11 75.9 7.6 58 82-139 21-96 (137)
33 cd02131 PA_hNAALADL2_like PA_h 97.9 1.4E-05 3.1E-10 73.2 5.8 92 82-174 14-137 (153)
34 cd04821 PA_M28_1_2 PA_M28_1_2: 95.1 0.027 5.8E-07 52.4 4.5 39 101-139 46-103 (157)
35 KOG2195 Transferrin receptor a 69.7 5.2 0.00011 45.7 4.3 39 101-139 181-219 (702)
36 COG4882 Predicted aminopeptida 57.1 49 0.0011 35.1 8.2 111 102-218 87-203 (486)
37 COG5540 RING-finger-containing 42.8 9 0.0002 39.3 0.3 40 108-147 150-193 (374)
38 KOG2927 Membrane component of 42.3 10 0.00022 39.6 0.6 27 331-357 239-265 (372)
39 PF06305 DUF1049: Protein of u 42.1 63 0.0014 25.0 5.0 54 175-229 2-57 (68)
40 COG1786 Swiveling domain assoc 33.4 1.3E+02 0.0028 27.3 6.0 73 101-183 47-122 (131)
41 PF06541 DUF1113: Protein of u 32.0 2.4E+02 0.0052 26.0 7.9 26 363-388 128-153 (157)
42 cd03028 GRX_PICOT_like Glutare 28.6 2.4E+02 0.0052 23.0 6.7 70 104-178 7-88 (90)
43 PRK11588 hypothetical protein; 26.8 1.5E+02 0.0032 32.9 6.4 43 248-290 280-323 (506)
44 PF03606 DcuC: C4-dicarboxylat 26.0 1.6E+02 0.0034 32.1 6.5 10 435-444 414-423 (465)
45 cd03418 GRX_GRXb_1_3_like Glut 23.8 1.5E+02 0.0032 22.7 4.4 57 106-165 1-60 (75)
46 cd03027 GRX_DEP Glutaredoxin ( 23.7 2.4E+02 0.0052 21.7 5.6 53 105-165 1-60 (73)
47 PRK10824 glutaredoxin-4; Provi 21.2 2.9E+02 0.0064 24.2 6.1 71 104-178 14-95 (115)
48 TIGR02189 GlrX-like_plant Glut 20.7 1.9E+02 0.0041 24.3 4.7 70 104-178 7-86 (99)
49 cd03029 GRX_hybridPRX5 Glutare 20.4 1.6E+02 0.0034 22.7 3.9 55 106-165 2-59 (72)
No 1
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=100.00 E-value=1e-112 Score=872.46 Aligned_cols=448 Identities=51% Similarity=0.850 Sum_probs=423.0
Q ss_pred HHhhccccccCCcceecCCCCCCCCCCCCCeEEEEEeeeecCCcceeEEecccccCCcccccccCcceEEEEecCCCCCC
Q 011904 17 SLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCC 96 (475)
Q Consensus 17 ~~~~~~~~~~~~~~~~~d~~~~~~p~c~~~~~lv~~~~~~~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC 96 (475)
+++-......++|+.|+++..|+.|||+|+||++|+++|+||+|..++.+..|+||..++...+++...+++.++|.|.|
T Consensus 8 ~l~g~~~~v~a~~~~~~~~~~~~s~gc~nd~~~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~c 87 (541)
T KOG2442|consen 8 LLLGLGSFVTAGDGGHTGNSHPKSPGCSNDFQMLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSC 87 (541)
T ss_pred hhhhhhheEeecccccccccccCCCCCcCceEEEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCcccc
Confidence 33333566788999999999999999999999999999999999999999999999999988887788888899999999
Q ss_pred CCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCcceeEEEeccchhhhHHHHhhc
Q 011904 97 SMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLN 176 (475)
Q Consensus 97 ~~~~~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~ 176 (475)
+++.+.++|+++++.||+|+|++|+++||++||.|++|+|+.+|+..|+|.+.++..+++||++||++++|+++.+....
T Consensus 88 s~~~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~ 167 (541)
T KOG2442|consen 88 STLQSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRS 167 (541)
T ss_pred CCCCccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred cceEEEEEecCCCCccchhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhccccCCCCcccccCCCCeeeeCccchh
Q 011904 177 TSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAV 256 (475)
Q Consensus 177 g~~V~V~l~~p~~p~~D~s~~~L~l~Av~tV~~gs~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~a~ 256 (475)
+++|++++|+|++|.+|++++++|+|||+||++|+|||++++||+..|+++.++|..+++.+++|++|++..++|+..|+
T Consensus 168 ~~~V~~~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~ 247 (541)
T KOG2442|consen 168 NDNVELALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAV 247 (541)
T ss_pred CCeEEEEEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEE
Confidence 99999999999999999999999999999999999999999999998999888877777777888889999999999999
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceeeeccccccccchhhhhhhhhhhh
Q 011904 257 LFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFA 336 (475)
Q Consensus 257 ~fpv~as~~Ll~Ly~~~~~~~~~ll~~~f~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~ 336 (475)
.|++++|.+|++||||+++ ++++++++|||+|..++++|+.+++.|++.+..+.....|..|+.++..+++.++|++++
T Consensus 248 ~fvv~~c~~LvLlyfF~~~-~V~v~iiif~i~g~~gLy~Cl~~lv~r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~a 326 (541)
T KOG2442|consen 248 FFVVTACGFLVLLYFFYSY-LVYVLIIIFCIGGAQGLYNCLAALVHRLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVA 326 (541)
T ss_pred EehhhhHHHHHHHHHHHHH-HHHHHhhheeecccchHHHHHHHHHhhhhhhcccccccccccCChhHHHHHHHHhhhhee
Confidence 9999999999999999974 999999999999999999999999999876655555667788899999999999999999
Q ss_pred eeeeeeeccccchhHhhHHHHHHHHHHHHhcccCchhHHHHHHHHHHhhheeeeeeeccccc--ceeEEEeecCCCCCCC
Q 011904 337 VVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARGDKSGED 414 (475)
Q Consensus 337 ~~w~~~~~~~~~Wil~nilgi~~~i~~l~~i~l~~~k~~~iLL~~lf~YDIFwVF~sp~~f~--~sVMv~VA~g~~~~~~ 414 (475)
++|+++||++|+|++||++|||+|+++++.+||||+|+|++||.++|+|||||||+||++|| ||||++||+|.++++|
T Consensus 327 V~W~v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~E 406 (541)
T KOG2442|consen 327 VVWAVFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTEE 406 (541)
T ss_pred EEEEEeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCEEEEecccc-----CCCCceeeecccchhhHHHHHHHHHHhhcccCCCCccch
Q 011904 415 GIPMLLKIPRMF-----DPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPI 465 (475)
Q Consensus 415 ~~P~~l~~P~~~-----~~~~~~s~LGlGDIviPGl~ia~~~rfD~~~~~~~~~~~ 465 (475)
++||+|++||++ ++|++|||||||||++||++||||+|||...++.|++|+
T Consensus 407 kiPMlLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~~~iYf 462 (541)
T KOG2442|consen 407 KIPMLLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSVSNIYF 462 (541)
T ss_pred CcceEEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhccccceeEE
Confidence 999999999999 889999999999999999999999999999998666654
No 2
>KOG2443 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.3e-50 Score=400.18 Aligned_cols=235 Identities=27% Similarity=0.487 Sum_probs=195.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhccccCCCCcccccCCCCeeeeCccchhh-HhHHHHHHHHHH
Q 011904 191 VVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVL-FVLVASCFLVML 269 (475)
Q Consensus 191 ~~D~s~~~L~l~Av~tV~~gs~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~a~~-fpv~as~~Ll~L 269 (475)
.++.+.+.+.++|+.+|++|++||+..++|. +++++..+.++.++|.- ||+++||+|++|
T Consensus 22 ~~~~~~~sl~l~A~l~i~~GsfRS~~~~~~~-------------------~d~~~~~es~t~~~a~~~fPi~~s~tLl~l 82 (362)
T KOG2443|consen 22 LLASAYVSLILIALLLIVIGSFRSLNYIKEN-------------------EDKKDKSESITKRDAGKMFPIIGSCTLLLL 82 (362)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHhhhhhhh-------------------hcccchhhhhhhhhhcccCCcccchHHHHH
Confidence 5778889999999999999999998766431 11124455778888887 999999999999
Q ss_pred HHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh----hhc---------ccCCceeeeccccccccchhhhhhhhh
Q 011904 270 YKLMSNW---FLELLVILFCIGGVEGLQTCLVALLSR----WFR---------RAGESFIKVPFFGAVSHLTLAVTPFCI 333 (475)
Q Consensus 270 y~~~~~~---~~~ll~~~f~i~g~~~l~~~l~~~~~~----~~~---------~~~~~~~~~p~~~~~~~~~l~~~~~~~ 333 (475)
|++++.. ..++++.||++.|+.++.+.+.|+++. ..+ +....+...-+.++++..+++.+..|.
T Consensus 83 yl~fk~ls~~~~~ll~~~ff~~g~~al~~~~~p~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~Ft~~~iv~~vls~ 162 (362)
T KOG2443|consen 83 YLLFKPLSKELINLLTMYFFFLGVIALLSLLDPFINAFKFLLLPMCQYHLLFPRGPGEKKEFICNGKFTRAQIVALVLSS 162 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhcCccchhheeeeccCCcccceeecccccHHHHHHHHHHH
Confidence 9988643 234789999999999999999999881 111 111122222234578888999999999
Q ss_pred hhheeeeeeeccccchhHhhHHHHHHHHHHHHhcccCchhHHHHHHHHHHhhheeeeeeecccccceeEEEeecCCCCCC
Q 011904 334 AFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGE 413 (475)
Q Consensus 334 ~~~~~w~~~~~~~~~Wil~nilgi~~~i~~l~~i~l~~~k~~~iLL~~lf~YDIFwVF~sp~~f~~sVMv~VA~g~~~~~ 413 (475)
.++++|++++| |++||++|+++|+++|+.+||||+|+|++||.|||+|||||||+ ++|||+|||+.|
T Consensus 163 ~i~v~~ll~~H----Wl~nN~lgms~~I~~I~~lrL~s~ktgalLL~gLffYDIfwVFg------TnVMVtVAt~~D--- 229 (362)
T KOG2443|consen 163 MIVVWYLLTKH----WLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGLFFYDIFWVFG------TNVMVTVATSLD--- 229 (362)
T ss_pred HHHHHHHhhhH----HHHHhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHheEEEec------CceEEEeecccC---
Confidence 99999999995 99999999999999999999999999999999999999999996 669999999976
Q ss_pred CCCCEEEEeccccCCC----CceeeecccchhhHHHHHHHHHHhhcccCC
Q 011904 414 DGIPMLLKIPRMFDPW----GGYSIIGFGDILLPGLIIAFSLRFKLSDLS 459 (475)
Q Consensus 414 ~~~P~~l~~P~~~~~~----~~~s~LGlGDIviPGl~ia~~~rfD~~~~~ 459 (475)
+|+||++|+..... .+||||||||||+||+|+|+++|||.++..
T Consensus 230 --~PikL~fP~~l~~~~~~as~fsMLGLGDIviPGiflAl~lRfD~~k~~ 277 (362)
T KOG2443|consen 230 --APIKLVFPQKLLFPGLTASNFSMLGLGDIVIPGIFLALVLRFDIRKKR 277 (362)
T ss_pred --CceEEecchhhccCCCccccceeccccchhhHHHHHHHHHHhhHHHHh
Confidence 99999999976532 359999999999999999999999988543
No 3
>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.
Probab=100.00 E-value=1.5e-51 Score=415.70 Aligned_cols=220 Identities=37% Similarity=0.655 Sum_probs=1.0
Q ss_pred CCCeeeeCccchhhHhHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cCCce
Q 011904 244 VSGVVDINTASAVLFVLVASCFLVMLYKLMSNWF------LELLVILFCIGGVEGLQTCLVALLSRWFRR-----AGESF 312 (475)
Q Consensus 244 ~~~~~~is~~~a~~fpv~as~~Ll~Ly~~~~~~~------~~ll~~~f~i~g~~~l~~~l~~~~~~~~~~-----~~~~~ 312 (475)
|++.+++|.+||++||++||++|++|||+++++. +++++.||+++|+.++..++.+.+.+.++. ..+.+
T Consensus 2 ~~~~~~is~~~A~~fpv~~S~~L~gLY~~~k~l~~~~i~~~~vl~~~f~~~gv~a~~~~i~~~l~~~~~~~~~~~~~~~~ 81 (298)
T PF04258_consen 2 EEEEETISSKDALIFPVVASCVLLGLYFFFKYLDKDLINIIYVLTVYFCLAGVIALSFLILPFLTYIFPFFPCRSFPWKK 81 (298)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccce
Confidence 4566789999999999999999999999987654 468999999999999888877777654331 11222
Q ss_pred eee--------ccccccccchhhhhhhhhhhheeeeeeeccccchhHhhHHHHHHHHHHHHhcccCchhHHHHHHHHHHh
Q 011904 313 IKV--------PFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFM 384 (475)
Q Consensus 313 ~~~--------p~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~Wil~nilgi~~~i~~l~~i~l~~~k~~~iLL~~lf~ 384 (475)
.++ ++.++.+..++++.++|+++++.|+++|++ +|++||++|+|+|+++++.+|+||+|++++||+++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~w~~~~~~--~W~l~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~ 159 (298)
T PF04258_consen 82 WKLSFPRRDIKPFSGSFTLSDLLSFLISLAIAVVWYVYRNE--HWILQNILGICFCINIISLIRLPSFKTATILLIGLFL 159 (298)
T ss_dssp ---------------------------------S----------------------------------------------
T ss_pred EEEEEEcccccceeeeeeHHHHHHHHHHHHHHHHHHHhccc--hHHHHhHHHHHHHHHHHHheeccchHHHHHHHHHHHH
Confidence 222 445678888899999999999999998875 5999999999999999999999999999999999999
Q ss_pred hheeeeeeecccccceeEEEeecCCCCCCCCCCEEEEeccccC----CCCceeeecccchhhHHHHHHHHHHhhcccCCC
Q 011904 385 YDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFD----PWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSS 460 (475)
Q Consensus 385 YDIFwVF~sp~~f~~sVMv~VA~g~~~~~~~~P~~l~~P~~~~----~~~~~s~LGlGDIviPGl~ia~~~rfD~~~~~~ 460 (475)
|||||||+||++||+|||++||||..++++++|||+++||..+ ..++||||||||||+||+|+++|+|||.+++..
T Consensus 160 YDif~VF~s~~~~g~svM~~VA~~~~~~~~~~P~~l~~P~~~~~~~~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~ 239 (298)
T PF04258_consen 160 YDIFWVFISPYFFGTSVMVTVATGGFDAPEKLPIKLQFPRFFDSNSSCPKPFSMLGLGDIVIPGLFIAFCLRFDKSRNKS 239 (298)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhccccCCCchhhhhhccccccccCCCeEEEEeccccccccCCCCeeEeccchHHHHHHHHHHHHHhhHhhccc
Confidence 9999999999999999999999994445578899999999863 457899999999999999999999999999544
Q ss_pred Cccch
Q 011904 461 HHIPI 465 (475)
Q Consensus 461 ~~~~~ 465 (475)
++.++
T Consensus 240 ~~~Yf 244 (298)
T PF04258_consen 240 RKPYF 244 (298)
T ss_dssp -----
T ss_pred cchHH
Confidence 44443
No 4
>smart00730 PSN Presenilin, signal peptide peptidase, family. Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
Probab=100.00 E-value=4.7e-39 Score=316.62 Aligned_cols=199 Identities=36% Similarity=0.546 Sum_probs=169.7
Q ss_pred eeeCccchhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceeeeccccccccchhh
Q 011904 248 VDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLA 327 (475)
Q Consensus 248 ~~is~~~a~~fpv~as~~Ll~Ly~~~~~~~~~ll~~~f~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 327 (475)
+.+|+++++.||+++|++|++||++++.+ +..+..+|+++|+.+++.++.+..... .+..+.+
T Consensus 3 ~~~n~~~~i~fii~~s~~Ll~Ly~~~~~~-~i~~~~~f~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 65 (249)
T smart00730 3 SLLNSLVAIVFPIVATFVLVLLYKFFKYL-VIVLVIYFSSLGVLFLYSLLYPLEVFR----------------VDYPTLL 65 (249)
T ss_pred ccccHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhHHHHH
Confidence 46789999999999999999999999876 788899999999999998888765432 2334556
Q ss_pred hhhhhhhhheeeeeeeccccchhHhhHHHHHHHHHHHHhcccCchhHHHHHHHHHHhhheeeeeeecccccceeEEEeec
Q 011904 328 VTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVAR 407 (475)
Q Consensus 328 ~~~~~~~~~~~w~~~~~~~~~Wil~nilgi~~~i~~l~~i~l~~~k~~~iLL~~lf~YDIFwVF~sp~~f~~sVMv~VA~ 407 (475)
...++++++..|.++++ ++|+.||++|+|+|+.+++.+|+||+|++++||+++|+|||||||+||. +++|||+|||
T Consensus 66 ~~~~~~~v~~~~~~~~~--~~w~~~~~lgi~~~~~~~~~~~l~~~~~~~iLL~~l~iYDif~Vf~t~~--~~~vMv~vA~ 141 (249)
T smart00730 66 ILLLNFAVVGFWCIHRK--GAWIQQDLIGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPG--PLRVMVEVAT 141 (249)
T ss_pred HHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHheeecCCC--CchHHhhHhc
Confidence 67778888889988876 6899999999999999999999999999999999999999999999997 8999999999
Q ss_pred CCCCCCCCCCEEEEecccc-----CCCCceeeecccchhhHHHHHHHHHHhhcccCCCCccchhh
Q 011904 408 GDKSGEDGIPMLLKIPRMF-----DPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISA 467 (475)
Q Consensus 408 g~~~~~~~~P~~l~~P~~~-----~~~~~~s~LGlGDIviPGl~ia~~~rfD~~~~~~~~~~~~~ 467 (475)
|.+...|.+|+++..||.. +..++++||||||||+||+++++|+|||.+++..+....++
T Consensus 142 ~~~~~~~~~P~ll~~p~~~~~~~~~~~~~~~~LGLGDiv~Pgilv~~a~~fd~~~~~~~~yf~~~ 206 (249)
T smart00730 142 GRDEPIKVFPALLYVPRLVVSFEDDEEGRFSMLGLGDIVFPGILVASAARFDVSVRSDSNYFLAC 206 (249)
T ss_pred cCCCCcccCChhhcccccccccccCCCCccceecCCCeeeHHHHHHHHHHhhhcccCCcccHHHH
Confidence 9863334689999999842 23468999999999999999999999998765544444433
No 5
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.97 E-value=7.8e-30 Score=230.73 Aligned_cols=139 Identities=56% Similarity=0.922 Sum_probs=127.2
Q ss_pred CeEEEEEeeeecCCcceeEEecccccCCcccccccCcceEEEEecCCCCCCCCCCCCCCCeEEEEecCCCCHHHHHHHHH
Q 011904 46 DFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAE 125 (475)
Q Consensus 46 ~~~lv~~~~~~~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~~l~g~IaLV~RG~CsF~~Ka~~Aq 125 (475)
+|++|++.+|++|+|..+|.+.+|+||.++|++..++.+++++.++|.++|++.+++++|+|+||+||+|+|.+|++|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~a~FG~~~p~~~~~~~~~~lv~~~~~~gC~~~~~~~~g~IvLV~RG~C~F~~K~~nA~ 80 (139)
T cd02132 1 PFQLVKVQNWVDGDEGDELVGVTARFGASLPSKEDNANKTRAVLANPLDCCSPSTSKLSGSIALVERGECAFTEKAKIAE 80 (139)
T ss_pred CceEEEeeeccCCccccEEEeeccccCCCCCCcccCccEEEEEECCcccccCCCCcccCCeEEEEECCCCCHHHHHHHHH
Confidence 58999999999999999999999999999998877788999999999999999988999999999999999999999999
Q ss_pred HcCCcEEEEEeCCCcccccccCCCCCCCCcceeEEEeccchhhhHHHHhhccceEEEEE
Q 011904 126 AAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 126 ~aGA~avIV~n~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~l 184 (475)
++||+++||||+.+++..|.+..+++..+++||+++|++++|+.|++.+++|.+|++++
T Consensus 81 ~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 81 AGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred HcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 99999999999987777776543444446899999999999999999999999998864
No 6
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.91 E-value=3.3e-24 Score=188.85 Aligned_cols=116 Identities=23% Similarity=0.400 Sum_probs=98.9
Q ss_pred eEEEEEeeeecCCcceeEEecccccCCcccccccCcceEEEEecCCCCCCCCCC---CCCCCeEEEEecCCCCHHHHHHH
Q 011904 47 FVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK---HKYAGDVIMVDRGNCKFTTKANI 123 (475)
Q Consensus 47 ~~lv~~~~~~~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~---~~l~g~IaLV~RG~CsF~~Ka~~ 123 (475)
||+.|+++| ..+|++++++.+.||+.++|..+|++.+ .+++|+|+||+||+|+|.+|++|
T Consensus 1 ~~~~~~~~~-----------------~~l~~~~~~~~~~~~~~~~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~ 63 (120)
T cd02129 1 YCILYNSQW-----------------ASLPSDLDKATLLPLRNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARL 63 (120)
T ss_pred CcEEECCcc-----------------eECCcchhhCcceeeecCCCcCCCCccccCccccCCeEEEEECCCcCHHHHHHH
Confidence 799999999 5799999899999999999999999876 47899999999999999999999
Q ss_pred HHHcCCcEEEEEeCCCcccccccCCCCCCCCcceeEEEeccchhhhHHHHhhccceEEEE
Q 011904 124 AEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQ 183 (475)
Q Consensus 124 Aq~aGA~avIV~n~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~ 183 (475)
||++||+|+|||||++.. .+. ...+...+++||++||++++|+.|++.+.+ .|+|+
T Consensus 64 Aq~aGA~aVII~nn~~~~-~~~-~~~~~~~~v~IP~v~Is~~dG~~i~~~l~~--~~~v~ 119 (120)
T cd02129 64 AQSLGAEGLLIVSRERLV-PPS-GNRSEYEKIDIPVALLSYKDMLDIQQTFGD--SVKVA 119 (120)
T ss_pred HHHCCCCEEEEEECCCCC-CCC-CCCCCCcCCcccEEEEeHHHHHHHHHHhcc--CcEEe
Confidence 999999999999997643 121 112223678999999999999999999964 45554
No 7
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.89 E-value=9.7e-23 Score=181.51 Aligned_cols=116 Identities=26% Similarity=0.467 Sum_probs=97.7
Q ss_pred ecccccCCcccccccCcceEEEEecCCCCCCCCCCC--CCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc---
Q 011904 66 GVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKH--KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE--- 140 (475)
Q Consensus 66 ~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~--~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~--- 140 (475)
+.+|+||.++|+.. ...++|+.++|.++|++.++ +++|||+|++||+|+|.+|+++||++||+|+||||+.++
T Consensus 2 ~~pa~FG~~~~~~~--~~~g~l~~~~p~~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~ 79 (126)
T cd02126 2 AGPAQFGMDLTGDK--AGVGRVVKAKPYRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSS 79 (126)
T ss_pred CCCcccCCcCCCCC--CceEEEEeCCchhcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccc
Confidence 46899999999753 36789999999999998764 689999999999999999999999999999999987653
Q ss_pred ----ccccccCCCCCCCCcceeEEEeccchhhhHHHHhhccceEEEEE
Q 011904 141 ----LYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 141 ----l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~l 184 (475)
.+.|.++. ....+++||+++|++++|+.|++.+++|.+|++++
T Consensus 80 ~~~~~~~m~~~~-~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 80 DTAPMFAMSGDG-DSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred cccceeEeecCC-CCCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 34554432 12246899999999999999999999999998864
No 8
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.87 E-value=9.1e-22 Score=173.39 Aligned_cols=110 Identities=25% Similarity=0.465 Sum_probs=93.8
Q ss_pred ccCCcccccccCcceEEEEecCCCCCCCCCCC--CCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc----ccc
Q 011904 70 RFGTTIVSKEKNANQIHLTLSHPRDCCSMPKH--KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE----LYK 143 (475)
Q Consensus 70 ~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~--~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~----l~~ 143 (475)
.||..++.+ +..++|+.++|.+||++.++ +++|+|+||+||+|+|.+|+++||++||+|+||||+.++ .+.
T Consensus 1 ~~~~~~~~~---~~~~~lv~~~p~~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~ 77 (118)
T cd02127 1 DFGTIFNTR---YKHVPLVPADPLEACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVE 77 (118)
T ss_pred CCCcccccc---ccceEEEECCccccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceE
Confidence 488888876 46689999999999998663 689999999999999999999999999999999998643 345
Q ss_pred cccCCCCCCCCcceeEEEeccchhhhHHHHhhccceEEEEE
Q 011904 144 MVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 144 M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~l 184 (475)
|.++ +...+++||+++|++++|+.|++.+++|..+++.+
T Consensus 78 m~~~--~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 78 MIQD--DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred ecCC--CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEee
Confidence 6553 23457899999999999999999999999887654
No 9
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.86 E-value=3.4e-21 Score=177.12 Aligned_cols=116 Identities=26% Similarity=0.410 Sum_probs=99.7
Q ss_pred cceeEEecccccCCcccccccCcceEEEEecCCCCCCCCCC------CCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEE
Q 011904 60 ENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK------HKYAGDVIMVDRGNCKFTTKANIAEAAGASALL 133 (475)
Q Consensus 60 e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~------~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avI 133 (475)
+..++.+.+|+||...+.. +.+++|+.++|.+||++.+ ++.+|+|+||+||+|+|.+|++|||++||+|+|
T Consensus 20 ~~~~~~~~~A~FG~~~~~~---~~~g~lv~~~p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avI 96 (153)
T cd02123 20 LTDEFDDLPANFGPIPPGS---GLKGVLVVAEPLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAI 96 (153)
T ss_pred ccceEeeecccCCCCCCCC---ceEEEEEeCCccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEE
Confidence 6678999999999887743 5788999999999999876 468899999999999999999999999999999
Q ss_pred EEeCCCc-ccccccCCCCCCCCcceeEEEeccchhhhHHHHhhccce
Q 011904 134 IINNQKE-LYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (475)
Q Consensus 134 V~n~~~~-l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~ 179 (475)
|||++++ +..|.+.+. ...+++||+++|++++|+.|++.+.+++.
T Consensus 97 I~n~~~~~~~~m~~~~~-~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 97 VYNDESNDLISMSGNDQ-EIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred EEECCCCcceeccCCCC-CCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 9998754 566765422 22478999999999999999999998876
No 10
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.85 E-value=3.7e-21 Score=173.91 Aligned_cols=123 Identities=25% Similarity=0.351 Sum_probs=96.8
Q ss_pred eeecCCcce--eEEecccccCCcccccccCcceEEEEec---CCCCCCCCCCC-----CCCCeEEEEecCCCCHHHHHHH
Q 011904 54 TWIDGIENE--EFVGVGARFGTTIVSKEKNANQIHLTLS---HPRDCCSMPKH-----KYAGDVIMVDRGNCKFTTKANI 123 (475)
Q Consensus 54 ~~~~g~e~~--~~~~~~A~FG~~lp~~~~~~~~~~Lv~~---~p~daC~~~~~-----~l~g~IaLV~RG~CsF~~Ka~~ 123 (475)
+++|..+.. +-.-.+|+||.++|.++ ..+.|+.. ++.+||++.++ +++|+||||+||+|+|.+|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~a~fg~~~~~~~---~~G~l~~~~~~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~n 79 (138)
T cd02122 3 TYVDPISNELTTEKTESGRYGEHSPKEE---AKGLVVVPDPPNDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKL 79 (138)
T ss_pred EEECCCCCeeeeeeccccccCCCCCCCc---cEEEEecCCCCCCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHH
Confidence 455553222 22235899999988874 56666544 45899998664 5789999999999999999999
Q ss_pred HHHcCCcEEEEEeCCC-c--ccccccCCCCCCCCcceeEEEeccchhhhHHHHhhccceEEEEE
Q 011904 124 AEAAGASALLIINNQK-E--LYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 124 Aq~aGA~avIV~n~~~-~--l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~l 184 (475)
||++||+++||||+++ . .+.|... + ..+||+++|++++|+.|++.+++|++|++++
T Consensus 80 A~~aGA~aVIIyn~~~~~~~~~~m~~~--~---~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 80 AAERNASAVVIYNNPGTGNETVKMSHP--G---TGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred HHHCCCcEEEEEECCCCCCceeeccCC--C---CCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 9999999999999986 2 5566432 1 2478999999999999999999999998864
No 11
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.85 E-value=7.9e-21 Score=169.50 Aligned_cols=112 Identities=28% Similarity=0.383 Sum_probs=89.8
Q ss_pred ccCCcccccccCcceEEEEec-CCCCCCCCCCC---------CCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q 011904 70 RFGTTIVSKEKNANQIHLTLS-HPRDCCSMPKH---------KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQK 139 (475)
Q Consensus 70 ~FG~~lp~~~~~~~~~~Lv~~-~p~daC~~~~~---------~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~ 139 (475)
.||...-.. ...+.|+.+ ++.++|++.++ ..+++|+||+||+|+|.+|++|||++||+|+||||+.+
T Consensus 1 ~FG~~~yg~---~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~ 77 (127)
T cd02125 1 NFGLPQYGG---TLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVD 77 (127)
T ss_pred CCCCCCcCC---eeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCC
Confidence 377543222 356667666 67899998753 36789999999999999999999999999999999977
Q ss_pred c-ccccccCCC----CCCCCcceeEEEeccchhhhHHHHhhccceEEEEE
Q 011904 140 E-LYKMVCDPD----ETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 140 ~-l~~M~~~~~----~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~l 184 (475)
+ +..|.++.+ +...+++||+++|++++|+.|++.+++|++|+|++
T Consensus 78 ~~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 78 EPLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred CccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 5 567755322 22457899999999999999999999999999875
No 12
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.82 E-value=1.3e-19 Score=159.09 Aligned_cols=114 Identities=34% Similarity=0.515 Sum_probs=97.9
Q ss_pred cccccCCcccccccCcceEEEEecCCCCCCCCCC--CCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc--cc
Q 011904 67 VGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK--HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE--LY 142 (475)
Q Consensus 67 ~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~--~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~--l~ 142 (475)
++|+||+.++......+.++++.++|.++|++.. ++++|||+|++||+|+|.+|+++|+++||+|+|+||+.++ .+
T Consensus 1 ~~a~fg~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~ 80 (118)
T cd04818 1 VSAGFGPALTNVTADVVLAGAAPASNTDGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPI 80 (118)
T ss_pred CCcccCCcCccccccceeEEEecCCcccccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcce
Confidence 4799999998754456899999999999999876 5799999999999999999999999999999999998764 34
Q ss_pred ccccCCCCCCCCcceeEEEeccchhhhHHHHhhccceEEEEE
Q 011904 143 KMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 143 ~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~l 184 (475)
.|... .....||+++|++++|+.|++.+++|++|++++
T Consensus 81 ~~~~~----~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 81 TMGGD----DPDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred eccCC----CCCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 45322 134679999999999999999999999998864
No 13
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.81 E-value=1.2e-19 Score=159.67 Aligned_cols=103 Identities=25% Similarity=0.412 Sum_probs=84.3
Q ss_pred ecccccCCcccccccCcceEEEEecCCCCCCCCCC-CCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc--cc
Q 011904 66 GVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK-HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE--LY 142 (475)
Q Consensus 66 ~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~-~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~--l~ 142 (475)
++.|+||+.+...-++ .. .++|.++|++.+ ++++||||||+||+|+|.+|++|||++||+++||||+.++ +.
T Consensus 5 ~~~~~~~~~~~~~~~~---~~--~~~p~~gC~~~~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~ 79 (117)
T cd04813 5 GRYASFSPILNPHLRG---SY--KVSPTDACSLQEHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLI 79 (117)
T ss_pred ccccccCCccCccccc---cc--cCCCCCCCCCCCcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccce
Confidence 4789999987665322 12 278899999876 5799999999999999999999999999999999998763 45
Q ss_pred ccccCCCCCCCCcceeEEEeccchhhhHHHHhh
Q 011904 143 KMVCDPDETDLDIHIPAVMMPQDAGASLEKMLL 175 (475)
Q Consensus 143 ~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~ 175 (475)
.|.+. +...+++||+++|++++|+.|++++.
T Consensus 80 ~m~~~--~~~~~v~IPav~Is~~~g~~L~~l~~ 110 (117)
T cd04813 80 TMFSN--GDTDNVTIPAMFTSRTSYHLLSSLLP 110 (117)
T ss_pred ecccC--CCCCCcEEEEEEEcHHHHHHHHHhcc
Confidence 66543 22457899999999999999988763
No 14
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.77 E-value=4.2e-18 Score=150.58 Aligned_cols=114 Identities=23% Similarity=0.423 Sum_probs=90.2
Q ss_pred cccccCCcccccccCcceEEEEecCC--CCCCCCCC---CCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc
Q 011904 67 VGARFGTTIVSKEKNANQIHLTLSHP--RDCCSMPK---HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL 141 (475)
Q Consensus 67 ~~A~FG~~lp~~~~~~~~~~Lv~~~p--~daC~~~~---~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l 141 (475)
+...|++..|.+ +++++++..++ .++|++.+ .+++|||+|++||+|+|.+|+++||++||+|+|+||+.++.
T Consensus 4 ~~~~~~~~~~~~---gi~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~ 80 (122)
T cd04816 4 VSLSYSPSTPPG---GVTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGG 80 (122)
T ss_pred EEEeccCCCCCC---CcEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCc
Confidence 345677666543 68889988775 59999764 47999999999999999999999999999999999987642
Q ss_pred cccccCCCCCCCCcceeEEEeccchhhhHHHHhhccceEEEEE
Q 011904 142 YKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 142 ~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~l 184 (475)
. +............||+++|++++|+.|++.+++|.+|++++
T Consensus 81 ~-~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 81 G-TAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred c-ccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 1 11110111245789999999999999999999999988864
No 15
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.74 E-value=2.3e-17 Score=145.79 Aligned_cols=113 Identities=27% Similarity=0.368 Sum_probs=87.8
Q ss_pred eeEEecccccCCcccccccCcceEEEEecCCCCCCCCCC--CCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCC-
Q 011904 62 EEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK--HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQ- 138 (475)
Q Consensus 62 ~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~--~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~- 138 (475)
..|...+..|.+. . +.+++++.. +.++|++.+ .+++|||+||+||+|+|.+|+++||++||+++||||+.
T Consensus 7 ~~~~~~~~~~~~~---~---~~~g~lv~~-~~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~ 79 (122)
T cd02130 7 EAIPTTAFTYSPA---G---EVTGPLVVV-PNLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVP 79 (122)
T ss_pred EEEeeeecccCCC---C---CcEEEEEEe-CCCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 4455555555533 2 356888886 478999754 47999999999999999999999999999999999987
Q ss_pred CcccccccCCCCCCCCcceeEEEeccchhhhHHHHhhccceEEEEE
Q 011904 139 KELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 139 ~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~l 184 (475)
++..... .....+..||+++|++++|+.|++.+++|++|++++
T Consensus 80 ~~~~~~~---~~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 80 AGGLSGT---LGEPSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred Ccccccc---cCCCCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 3332211 111235789999999999999999999999998864
No 16
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.73 E-value=3.5e-18 Score=153.94 Aligned_cols=165 Identities=22% Similarity=0.323 Sum_probs=127.6
Q ss_pred ccchhhHHHHHHHHHhhccccccCCcceecCCCCCCCCCCCCCeEEEEEeeeecCCcceeEEecccc-cCCcccccccCc
Q 011904 4 KRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGAR-FGTTIVSKEKNA 82 (475)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~c~~~~~lv~~~~~~~g~e~~~~~~~~A~-FG~~lp~~~~~~ 82 (475)
+|++|++|.+.|...+.++... +..+..+|+.- |++ ..++....+|+..+|. ||...|+.-
T Consensus 2 ~p~gWl~l~~~L~~~vaa~~~~--~~~v~~qD~~~--------F~v-----lsP~~l~Yty~~~pAkdfG~~F~~r~--- 63 (193)
T KOG3920|consen 2 KPRGWLLLSFLLIIQVAAAKIP--YEEVENQDNML--------FTV-----LSPYTLAYTYQMKPAKDFGVHFPDRF--- 63 (193)
T ss_pred CcceehHHHHHHHHHHHHccCC--cceeeecceEE--------EEe-----cCcccEEEEEEecchhhhccccchhh---
Confidence 6899999999998888777544 33344334321 222 2345567788889996 999998864
Q ss_pred ceEEEEecCCCCCCCCCCC--CCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc------ccccccCCCCCCCC
Q 011904 83 NQIHLTLSHPRDCCSMPKH--KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE------LYKMVCDPDETDLD 154 (475)
Q Consensus 83 ~~~~Lv~~~p~daC~~~~~--~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~------l~~M~~~~~~~~~~ 154 (475)
...+||.++|..||+.+.| ...|.|+|++||+|+|..|.+++|++||.++||-++... .++|..+ ++.++
T Consensus 64 e~~~lV~adPp~aC~elrN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D--~sq~~ 141 (193)
T KOG3920|consen 64 ENLELVLADPPHACEELRNEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPD--ESQDR 141 (193)
T ss_pred cCcceeecCChhHHHHHhhcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCc--ccccc
Confidence 3578999999999999875 578999999999999999999999999999999976542 3578764 44567
Q ss_pred cceeEEEeccchhhhHHHHhhccceEEEEEecCC
Q 011904 155 IHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPR 188 (475)
Q Consensus 155 i~IPvv~Is~~~G~~L~~~l~~g~~V~V~l~~p~ 188 (475)
-+||++++-..+|-.++..|++-..+-..+.-|.
T Consensus 142 AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 142 ANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred cCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 8999999999999999888887665555555443
No 17
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.6e-16 Score=159.02 Aligned_cols=109 Identities=25% Similarity=0.370 Sum_probs=91.0
Q ss_pred eEEecccccCCcccccccCcceEEEEecCCCCCCCCCCC------CCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEe
Q 011904 63 EFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKH------KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIIN 136 (475)
Q Consensus 63 ~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~------~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n 136 (475)
+|.+.+|.||+.++.++ ..+-++.++|.+||++..+ .-...++||+||+|+|.+|+++||++|++|+||||
T Consensus 35 sf~d~~a~f~~s~~~e~---~~G~l~~~ep~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVyn 111 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSEG---NLGVLVVAEPLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYN 111 (348)
T ss_pred cccCCccccCCcccccc---ceeeeecCCCccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEec
Confidence 78999999999998774 6778899999999999753 34578999999999999999999999999999999
Q ss_pred CCCc--ccccccCCCCCCCCcceeEEEeccchhhhHHHHhhccc
Q 011904 137 NQKE--LYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTS 178 (475)
Q Consensus 137 ~~~~--l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~ 178 (475)
|.+. +..|.. + ..++.|+++|++...|+.|.+...++.
T Consensus 112 n~~~~~lv~~~~--~--~~~v~i~~~~vs~~~ge~l~~~~~~~~ 151 (348)
T KOG4628|consen 112 NVGSEDLVAMAS--N--PSKVDIHIVFVSVFSGELLSSYAGRTE 151 (348)
T ss_pred CCCCchheeecc--C--CccceeEEEEEeeehHHHHHHhhcccc
Confidence 7543 555532 2 357899999999999999999654443
No 18
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.69 E-value=1.5e-16 Score=142.39 Aligned_cols=89 Identities=31% Similarity=0.399 Sum_probs=72.9
Q ss_pred cCCCCCCCCCC---CCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCcceeEEEeccch
Q 011904 90 SHPRDCCSMPK---HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDA 166 (475)
Q Consensus 90 ~~p~daC~~~~---~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~ 166 (475)
+++.+||++.+ ++++|||+||+||+|+|.+|++|||++||+++||||++++...+.. + ....+|.+++ +++
T Consensus 38 ~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~--~---~~~~~~~~~~-~~~ 111 (129)
T cd02124 38 SVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVG--S---DADSIIAAVT-PED 111 (129)
T ss_pred CCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccC--C---CCcceeeEEe-HHH
Confidence 35789999875 3689999999999999999999999999999999999876544432 1 1234565555 999
Q ss_pred hhhHHHHhhccceEEEEE
Q 011904 167 GASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 167 G~~L~~~l~~g~~V~V~l 184 (475)
|++|++.+++|++|++++
T Consensus 112 G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 112 GEAWIDALAAGSNVTVDF 129 (129)
T ss_pred HHHHHHHHhcCCeEEEeC
Confidence 999999999999998864
No 19
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.67 E-value=6.8e-16 Score=139.58 Aligned_cols=95 Identities=24% Similarity=0.303 Sum_probs=74.7
Q ss_pred cceEEEEecCCCCCCCCCCCCCCCeEEEEecCCCC-----HHHHHHHHHHcCCcEEEEEeCC--Ccccc-cccCCCCCCC
Q 011904 82 ANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCK-----FTTKANIAEAAGASALLIINNQ--KELYK-MVCDPDETDL 153 (475)
Q Consensus 82 ~~~~~Lv~~~p~daC~~~~~~l~g~IaLV~RG~Cs-----F~~Ka~~Aq~aGA~avIV~n~~--~~l~~-M~~~~~~~~~ 153 (475)
..+++|+..... +|+....+++|||+||+||+|+ |.+|++|||++||+|+|||||. ++.+. +-+. ...
T Consensus 35 ~~tg~lv~~g~~-g~d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~---~~~ 110 (139)
T cd04817 35 SATGSLYYCGTS-GGSYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVD---TNN 110 (139)
T ss_pred cceEEEEEccCC-CccccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccC---CCC
Confidence 567888887643 4754445899999999999999 9999999999999999999998 44332 2221 123
Q ss_pred CcceeEEEeccchhhhHHHHhhccceE
Q 011904 154 DIHIPAVMMPQDAGASLEKMLLNTSSV 180 (475)
Q Consensus 154 ~i~IPvv~Is~~~G~~L~~~l~~g~~V 180 (475)
+++||+++|++++|+.|++.+.++.+|
T Consensus 111 ~~~IP~v~is~~dG~~L~~~l~~~~tv 137 (139)
T cd04817 111 DTTIPSVSVDRADGQALLAALGQSTTV 137 (139)
T ss_pred CceEeEEEeeHHHHHHHHHHhcCCCee
Confidence 579999999999999999998555443
No 20
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.52 E-value=1.3e-14 Score=122.49 Aligned_cols=91 Identities=25% Similarity=0.400 Sum_probs=64.7
Q ss_pred cceEEEEecCC---CCCCCC---CCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCc
Q 011904 82 ANQIHLTLSHP---RDCCSM---PKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDI 155 (475)
Q Consensus 82 ~~~~~Lv~~~p---~daC~~---~~~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l~~M~~~~~~~~~~i 155 (475)
..+++|+...+ ...|.+ ...+++|||||++||+|+|.+|+++||++||+|+||+|+.+....+.. .....+.
T Consensus 5 ~~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~--~~~~~~~ 82 (101)
T PF02225_consen 5 TVTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMID--SEDPDPI 82 (101)
T ss_dssp EEEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTC--EBTTTST
T ss_pred CEEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCccc--ccCCCCc
Confidence 35678874332 222322 225799999999999999999999999999999999993322211111 1234567
Q ss_pred ceeEEEeccchhhhHHHHh
Q 011904 156 HIPAVMMPQDAGASLEKML 174 (475)
Q Consensus 156 ~IPvv~Is~~~G~~L~~~l 174 (475)
+||+++|++++|+.|++++
T Consensus 83 ~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 83 DIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp BSEEEEE-HHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhhccC
Confidence 9999999999999999864
No 21
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.51 E-value=6.1e-14 Score=122.82 Aligned_cols=94 Identities=30% Similarity=0.447 Sum_probs=75.0
Q ss_pred cCCCCCCCCCC-----CCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc-ccccccCCCCCCCCcceeEEEec
Q 011904 90 SHPRDCCSMPK-----HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE-LYKMVCDPDETDLDIHIPAVMMP 163 (475)
Q Consensus 90 ~~p~daC~~~~-----~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~-l~~M~~~~~~~~~~i~IPvv~Is 163 (475)
..+.++|++.. .+++|||+|++||+|+|.+|+++||++||+|+|++|+.+. ...|... .....+..||+++|+
T Consensus 27 ~~~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~-~~~~~~~~iP~~~is 105 (126)
T cd00538 27 AGPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSV-GLESTDPSIPTVGIS 105 (126)
T ss_pred ccceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccc-cCCCCCCcEeEEEeC
Confidence 34667887753 4699999999999999999999999999999999998763 2222221 111235679999999
Q ss_pred cchhhhHHHHhhccceEEEEE
Q 011904 164 QDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 164 ~~~G~~L~~~l~~g~~V~V~l 184 (475)
+++|+.|++++++|+++++++
T Consensus 106 ~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 106 YADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred HHHHHHHHHHHhcCCceEEeC
Confidence 999999999999999888753
No 22
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.39 E-value=3.7e-12 Score=115.61 Aligned_cols=93 Identities=24% Similarity=0.346 Sum_probs=72.2
Q ss_pred cceEEEEecCCCCCCCC--CC-CCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCccee
Q 011904 82 ANQIHLTLSHPRDCCSM--PK-HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIP 158 (475)
Q Consensus 82 ~~~~~Lv~~~p~daC~~--~~-~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l~~M~~~~~~~~~~i~IP 158 (475)
+..++++.+.. |++ .. .+++|||+|++||+|+|.+|+++||++||+|+|+||+.++...+... ....||
T Consensus 25 ~~~~~lv~~g~---g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~-----~~~~iP 96 (143)
T cd02133 25 GKTYELVDAGL---GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLG-----EAVFIP 96 (143)
T ss_pred CcEEEEEEccC---CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCC-----CCCeEe
Confidence 46778887642 222 22 46999999999999999999999999999999999998665444221 135699
Q ss_pred EEEeccchhhhHHHHhhccceEEEEE
Q 011904 159 AVMMPQDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 159 vv~Is~~~G~~L~~~l~~g~~V~V~l 184 (475)
+++|++++|+.|++.+++ ++++++
T Consensus 97 ~v~Is~~dG~~L~~~l~~--~~~i~~ 120 (143)
T cd02133 97 VVFISKEDGEALKAALES--SKKLTF 120 (143)
T ss_pred EEEecHHHHHHHHHHHhC--CCeEEE
Confidence 999999999999999987 344444
No 23
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.36 E-value=5.5e-12 Score=112.47 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=74.9
Q ss_pred cceEEEEecCCCCCC-CCC-CCCCCCeEEEEecCCC--CHHHHHHHHHHcCCcEEEEEeCCCcccccccCC-CCCCCCcc
Q 011904 82 ANQIHLTLSHPRDCC-SMP-KHKYAGDVIMVDRGNC--KFTTKANIAEAAGASALLIINNQKELYKMVCDP-DETDLDIH 156 (475)
Q Consensus 82 ~~~~~Lv~~~p~daC-~~~-~~~l~g~IaLV~RG~C--sF~~Ka~~Aq~aGA~avIV~n~~~~l~~M~~~~-~~~~~~i~ 156 (475)
..+++++.+.. +. ++. ..+++|||||++||.| +|.+|+++|+++||+|+|++|+.++.+...... ........
T Consensus 22 ~~~~~lV~~g~--G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~ 99 (127)
T cd04819 22 EAKGEPVDAGY--GLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSP 99 (127)
T ss_pred CeeEEEEEeCC--CCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCC
Confidence 35778887652 21 111 2369999999999999 999999999999999999999876533211111 11123468
Q ss_pred eeEEEeccchhhhHHHHhhccceEEEE
Q 011904 157 IPAVMMPQDAGASLEKMLLNTSSVSVQ 183 (475)
Q Consensus 157 IPvv~Is~~~G~~L~~~l~~g~~V~V~ 183 (475)
||++.|+++||+.|++++++|+++.++
T Consensus 100 IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 100 IPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred CCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 999999999999999999999887664
No 24
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.29 E-value=7e-12 Score=112.94 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=77.2
Q ss_pred cCcceEEEEecCCCCCCCCC-CCCCCCeEEEEecCCC------CHHHH-------HHHHHHcCCcEEEEEeCCCcccccc
Q 011904 80 KNANQIHLTLSHPRDCCSMP-KHKYAGDVIMVDRGNC------KFTTK-------ANIAEAAGASALLIINNQKELYKMV 145 (475)
Q Consensus 80 ~~~~~~~Lv~~~p~daC~~~-~~~l~g~IaLV~RG~C------sF~~K-------a~~Aq~aGA~avIV~n~~~~l~~M~ 145 (475)
.++++++++.....+.=... ..+++|||||++||.| +|.+| +++|+++||.|+|++|+.+....+.
T Consensus 14 ~~gvta~vv~v~~~~~~~~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~ 93 (134)
T cd04815 14 PEGITAEVVVVKSFDELKAAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSP 93 (134)
T ss_pred CCCcEEEEEEECCHHHHHhcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCC
Confidence 34578888876532211111 2479999999999999 99999 7999999999999999754322111
Q ss_pred cC--CCCCCCCcceeEEEeccchhhhHHHHhhccceEEEEE
Q 011904 146 CD--PDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQL 184 (475)
Q Consensus 146 ~~--~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g~~V~V~l 184 (475)
++ .........||++.|+.++|+.|.+++++|++|++++
T Consensus 94 ~~G~~~~~~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 94 HTGMMSYDDGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred cCCccccCCCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 11 1111224579999999999999999999999988864
No 25
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.16 E-value=1.1e-10 Score=102.88 Aligned_cols=83 Identities=22% Similarity=0.368 Sum_probs=68.7
Q ss_pred CCCCCCCCC---CCCCCeEEEEecCCC-CHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCcceeEEEeccchh
Q 011904 92 PRDCCSMPK---HKYAGDVIMVDRGNC-KFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAG 167 (475)
Q Consensus 92 p~daC~~~~---~~l~g~IaLV~RG~C-sF~~Ka~~Aq~aGA~avIV~n~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G 167 (475)
....|++.. .+++|||+|++||+| +|.+|+++||++||.|+|++|+.++...+.. ....||+++|++++|
T Consensus 36 ~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~~~~~------~~~~iP~v~I~~~~g 109 (126)
T cd02120 36 DASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVA------DAHVLPAVHVDYEDG 109 (126)
T ss_pred ccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCceecc------cccccceEEECHHHH
Confidence 346898754 468999999999999 9999999999999999999998765433321 135799999999999
Q ss_pred hhHHHHhhccceE
Q 011904 168 ASLEKMLLNTSSV 180 (475)
Q Consensus 168 ~~L~~~l~~g~~V 180 (475)
+.|+++++++..-
T Consensus 110 ~~l~~y~~~~~~~ 122 (126)
T cd02120 110 TAILSYINSTSNP 122 (126)
T ss_pred HHHHHHHHcCCCc
Confidence 9999999876543
No 26
>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=99.04 E-value=1.2e-09 Score=108.24 Aligned_cols=115 Identities=24% Similarity=0.374 Sum_probs=88.3
Q ss_pred hhhhhhhheeeeeeeccccchhHhhHHHHHHHHH--HHHhcccCchhHHHHHHHHHHhhheeeeeeecccccceeEEEee
Q 011904 329 TPFCIAFAVVWAIYRKVSFAWIGQDILGIALIIT--VLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVA 406 (475)
Q Consensus 329 ~~~~~~~~~~w~~~~~~~~~Wil~nilgi~~~i~--~l~~i~l~~~k~~~iLL~~lf~YDIFwVF~sp~~f~~sVMv~VA 406 (475)
...++++++..+.+. .|+..|+.|+.++.. .+=-+++.-+. +.+||..+-+||-.-||.|+ .|++.|
T Consensus 96 ~~~ai~~~~~L~~yp----EWYviD~~Gil~~aG~aaiFGISl~~lp-aiiLL~iLAVYDaISVYkTk------HMltLA 164 (283)
T PF06550_consen 96 LILAIALTALLYKYP----EWYVIDIAGILMGAGAAAIFGISLGILP-AIILLAILAVYDAISVYKTK------HMLTLA 164 (283)
T ss_pred HHHHHHHHHHHHhcc----hHHHHHHHHHHHHhHHHHHHhhhccHHH-HHHHHHHHHHhhhhheecch------HHHHHH
Confidence 334444444434444 499999999999866 44457776555 78999999999999999655 899999
Q ss_pred cCCCCCCCCCCEEEEeccccCC--------------CCceeeecccchhhHHHHHHHHHHhhcc
Q 011904 407 RGDKSGEDGIPMLLKIPRMFDP--------------WGGYSIIGFGDILLPGLIIAFSLRFKLS 456 (475)
Q Consensus 407 ~g~~~~~~~~P~~l~~P~~~~~--------------~~~~s~LGlGDIviPGl~ia~~~rfD~~ 456 (475)
.|.- +.++|+++++|+..+. .++-.++|+||.++|.++++-...|...
T Consensus 165 egv~--d~klPilfViP~~~~ySf~~~~~~~~~~~~~r~a~fiGlGD~vmPtILVvSa~~f~~~ 226 (283)
T PF06550_consen 165 EGVM--DLKLPILFVIPKKRGYSFLKDGFDNREEKEERDAFFIGLGDAVMPTILVVSAAFFLSA 226 (283)
T ss_pred HHHh--ccCCceEEEEecccCccccccccccccccccccceEeccchhhhHHHHHHHHHHhccc
Confidence 9963 3689999999986421 1234689999999999999999998655
No 27
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.83 E-value=9.7e-09 Score=97.01 Aligned_cols=91 Identities=21% Similarity=0.190 Sum_probs=66.4
Q ss_pred cceEEEEecCCCCCCCCC--------CCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCccccc---------
Q 011904 82 ANQIHLTLSHPRDCCSMP--------KHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKM--------- 144 (475)
Q Consensus 82 ~~~~~Lv~~~p~daC~~~--------~~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l~~M--------- 144 (475)
.++++++.++ .| .+. ..+++|||||++||+|++.+|+++||++||+|+|+|||..+...+
T Consensus 28 ~v~g~lVyvn--~G-~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~ 104 (183)
T cd02128 28 TVTGKLVYAN--YG-RKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGH 104 (183)
T ss_pred ceEEEEEEcC--CC-CHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecc
Confidence 4678888874 22 222 137899999999999999999999999999999999985321110
Q ss_pred ---ccCC---------C-------CCCCCcceeEEEeccchhhhHHHHhh
Q 011904 145 ---VCDP---------D-------ETDLDIHIPAVMMPQDAGASLEKMLL 175 (475)
Q Consensus 145 ---~~~~---------~-------~~~~~i~IPvv~Is~~~G~~L~~~l~ 175 (475)
..++ . +...-.+||+.=|++++++.|++.+.
T Consensus 105 ~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~ 154 (183)
T cd02128 105 VHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMG 154 (183)
T ss_pred eeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcC
Confidence 0000 0 00012479999999999999999885
No 28
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.68 E-value=5.9e-09 Score=99.94 Aligned_cols=112 Identities=27% Similarity=0.479 Sum_probs=84.2
Q ss_pred hhhheeeeeeeccccchhHhhHHHHHHHHHHHH--hcccCchhHHHHHHHHHHhhheeeeeeecccccceeEEEeecCCC
Q 011904 333 IAFAVVWAIYRKVSFAWIGQDILGIALIITVLQ--IVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDK 410 (475)
Q Consensus 333 ~~~~~~w~~~~~~~~~Wil~nilgi~~~i~~l~--~i~l~~~k~~~iLL~~lf~YDIFwVF~sp~~f~~sVMv~VA~g~~ 410 (475)
++++.++.++++. .|+..|..|.+++...-. -+++.-+. +.+||..+-+||-.-||. |..|++.|+|.-
T Consensus 98 ~aI~~~~lL~~~p--eWyVid~ag~~la~Giaai~GIsfgv~p-avvlL~~lavYDaIsVYk------T~HMIslA~~v~ 168 (277)
T COG3389 98 LAIGLVYLLYKYP--EWYVIDLAGFFLAVGIAAIFGISFGVLP-AVVLLIALAVYDAISVYK------TRHMISLAEGVM 168 (277)
T ss_pred HHHHHHHhhhhcc--ceEEeehHHHHHHhhHHHhheeecchHH-HHHHHHHHHHHHHHHHHh------HHHHHHHHHHHH
Confidence 3444445444432 599999999998876544 56666555 778999999999999995 558999999953
Q ss_pred CCCCCCCEEEEeccccC-----------CCCceeeecccchhhHHHHHHHHHHhhc
Q 011904 411 SGEDGIPMLLKIPRMFD-----------PWGGYSIIGFGDILLPGLIIAFSLRFKL 455 (475)
Q Consensus 411 ~~~~~~P~~l~~P~~~~-----------~~~~~s~LGlGDIviPGl~ia~~~rfD~ 455 (475)
..++||++++|...+ ..++--|+|+||+++|-+++.-+.-|-.
T Consensus 169 --d~~lPmlfviP~~l~ysf~~~~fe~r~dgna~miG~GDavmPsIlVvSaa~f~~ 222 (277)
T COG3389 169 --DLDLPMLFVIPENLAYSFVEDAFENRGDGNAYMIGLGDAVMPSILVVSAAFFLI 222 (277)
T ss_pred --hcCCceEEEeecccccceeehhhhcCCCCceEEEeechhhcccceeeehHHhcc
Confidence 257999999996532 1355679999999999999887766643
No 29
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.30 E-value=4.8e-06 Score=76.68 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=62.1
Q ss_pred cceEEEEecC---CCCCCCCCC---CCCCCeEEEEecCC------------------CCHHHHHHHHHHcCCcEEEEEeC
Q 011904 82 ANQIHLTLSH---PRDCCSMPK---HKYAGDVIMVDRGN------------------CKFTTKANIAEAAGASALLIINN 137 (475)
Q Consensus 82 ~~~~~Lv~~~---p~daC~~~~---~~l~g~IaLV~RG~------------------CsF~~Ka~~Aq~aGA~avIV~n~ 137 (475)
..++++|.+. ..+.|...+ .+++||||||.||+ |++..|+++|+++||+|+|+||+
T Consensus 19 ~vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d 98 (151)
T cd04822 19 AVTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNG 98 (151)
T ss_pred CceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeC
Confidence 3678888775 356786544 48999999999985 99999999999999999999998
Q ss_pred CCcccccccCCCCCCCCcceeEEEeccchhhhHHHH
Q 011904 138 QKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKM 173 (475)
Q Consensus 138 ~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~ 173 (475)
.++.-. ..+........ .++.++.+..+.+..+
T Consensus 99 ~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 99 PNSHSG--DADRLPRFGGT-APQRVDIAAADPWFTA 131 (151)
T ss_pred CcccCc--ccccccccCcc-ceEEechHHHHHHhhh
Confidence 654210 00000000111 2777888877777665
No 30
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.27 E-value=2.7e-06 Score=82.83 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=66.3
Q ss_pred ceEEEEecCCCCCCCCC--------CCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc----------c--
Q 011904 83 NQIHLTLSHPRDCCSMP--------KHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL----------Y-- 142 (475)
Q Consensus 83 ~~~~Lv~~~p~daC~~~--------~~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l----------~-- 142 (475)
.+++++.++ .|... ..+++|||||+++|+|.+.+|+++||++||+|+|+|++..+. +
T Consensus 45 v~g~lVyvn---yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~yP~ 121 (220)
T cd02121 45 VTAELVYAN---YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTYPD 121 (220)
T ss_pred ceEEEEEcC---CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccccCCC
Confidence 578888876 34332 247999999999999999999999999999999999974221 0
Q ss_pred ---------cc-------ccCCC------------------CCCCCcceeEEEeccchhhhHHHHhhc
Q 011904 143 ---------KM-------VCDPD------------------ETDLDIHIPAVMMPQDAGASLEKMLLN 176 (475)
Q Consensus 143 ---------~M-------~~~~~------------------~~~~~i~IPvv~Is~~~G~~L~~~l~~ 176 (475)
.. ...++ +...-.+||+.=|+..+++.|++.|..
T Consensus 122 g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g 189 (220)
T cd02121 122 GPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGG 189 (220)
T ss_pred CCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCC
Confidence 00 00000 001124699999999999999999863
No 31
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.25 E-value=3.1e-06 Score=77.15 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=47.5
Q ss_pred ceEEEEecC---CCCCCCCCC---CCCCCeEEEEecCCC------------------CHHHHHHHHHHcCCcEEEEEeCC
Q 011904 83 NQIHLTLSH---PRDCCSMPK---HKYAGDVIMVDRGNC------------------KFTTKANIAEAAGASALLIINNQ 138 (475)
Q Consensus 83 ~~~~Lv~~~---p~daC~~~~---~~l~g~IaLV~RG~C------------------sF~~Ka~~Aq~aGA~avIV~n~~ 138 (475)
..+++|.+. ...+|...+ .+++||||||.||+| ++..|+++|+++||+|+|++|+.
T Consensus 20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 567888764 345676544 489999999999999 69999999999999999999986
Q ss_pred C
Q 011904 139 K 139 (475)
Q Consensus 139 ~ 139 (475)
+
T Consensus 100 ~ 100 (142)
T cd04814 100 A 100 (142)
T ss_pred C
Confidence 5
No 32
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.21 E-value=4e-06 Score=75.93 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=48.3
Q ss_pred cceEEEEecC---CCCCCCCCC---CCCCCeEEEEecCCCC------------HHHHHHHHHHcCCcEEEEEeCCC
Q 011904 82 ANQIHLTLSH---PRDCCSMPK---HKYAGDVIMVDRGNCK------------FTTKANIAEAAGASALLIINNQK 139 (475)
Q Consensus 82 ~~~~~Lv~~~---p~daC~~~~---~~l~g~IaLV~RG~Cs------------F~~Ka~~Aq~aGA~avIV~n~~~ 139 (475)
..++++|.+. ..+.|...+ .+++|||||++||+|+ +.+|+++|+++||+|+|+||+..
T Consensus 21 ~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 21 SVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred CceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 4677888764 356776443 4899999999999995 88999999999999999999864
No 33
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.94 E-value=1.4e-05 Score=73.19 Aligned_cols=92 Identities=11% Similarity=0.036 Sum_probs=62.6
Q ss_pred cceEEEEecCC---CCC--CCCCCCCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCccc---------c--cc
Q 011904 82 ANQIHLTLSHP---RDC--CSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELY---------K--MV 145 (475)
Q Consensus 82 ~~~~~Lv~~~p---~da--C~~~~~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~l~---------~--M~ 145 (475)
.+++++|.++- .|- =.. .-+++|||+|++.|+.....|++|||++||.|+|||.|..+.- . +.
T Consensus 14 ~Vtg~~VYvNyG~~eDf~~L~~-~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~~v~~v~~ 92 (153)
T cd02131 14 TLQAEVVDVQYGSVEDLRRIRD-NMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWHQAFMVSL 92 (153)
T ss_pred ceEEEEEEecCCCHHHHHHHHh-CCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCccceEEEec
Confidence 35677777651 000 001 1479999999999999999999999999999999998853210 0 00
Q ss_pred c--CC--------------CCCCCCcceeEEEeccchhhhHHHHh
Q 011904 146 C--DP--------------DETDLDIHIPAVMMPQDAGASLEKML 174 (475)
Q Consensus 146 ~--~~--------------~~~~~~i~IPvv~Is~~~G~~L~~~l 174 (475)
+ ++ .....-.+||+.=|+..|++.|+++-
T Consensus 93 ~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~ 137 (153)
T cd02131 93 NPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAP 137 (153)
T ss_pred CCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCC
Confidence 0 10 00112247999999999999987764
No 34
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.12 E-value=0.027 Score=52.35 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=32.9
Q ss_pred CCCCCeEEEEecCCCCHH-------------------HHHHHHHHcCCcEEEEEeCCC
Q 011904 101 HKYAGDVIMVDRGNCKFT-------------------TKANIAEAAGASALLIINNQK 139 (475)
Q Consensus 101 ~~l~g~IaLV~RG~CsF~-------------------~Ka~~Aq~aGA~avIV~n~~~ 139 (475)
.+++||||++.+|+=.+. .|.+.|+++||+|+|++++..
T Consensus 46 ~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 46 LDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred CCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 489999999998865433 499999999999999998753
No 35
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=69.71 E-value=5.2 Score=45.66 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=35.7
Q ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCC
Q 011904 101 HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQK 139 (475)
Q Consensus 101 ~~l~g~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~ 139 (475)
-+++|+|+|++-|.-.+.+|++||+++||.|+++|.+..
T Consensus 181 i~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~ 219 (702)
T KOG2195|consen 181 INLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPY 219 (702)
T ss_pred ccccCceEEEEccccchhhhHhhHHHhhcCcEEEeeccc
Confidence 368899999999999999999999999999999998653
No 36
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=57.13 E-value=49 Score=35.08 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=66.3
Q ss_pred CCCCeEEEEecCCCCHHHHHH--HHHHcCCcEEEEEeCCCcccccccCCC----CCCCCcceeEEEeccchhhhHHHHhh
Q 011904 102 KYAGDVIMVDRGNCKFTTKAN--IAEAAGASALLIINNQKELYKMVCDPD----ETDLDIHIPAVMMPQDAGASLEKMLL 175 (475)
Q Consensus 102 ~l~g~IaLV~RG~CsF~~Ka~--~Aq~aGA~avIV~n~~~~l~~M~~~~~----~~~~~i~IPvv~Is~~~G~~L~~~l~ 175 (475)
|..|.+++-+|-.--...|+. .|.++||.|+|+-.+++.- |..+++ .......||+..++..++....+
T Consensus 87 D~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rr--iV~~Gd~gy~~~s~PtPIPva~v~en~~~y~~~--- 161 (486)
T COG4882 87 DAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRR--IVTGGDWGYSVSSSPTPIPVAVVPENYSRYAEE--- 161 (486)
T ss_pred CCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCcee--EEecccccccCCCCCCCcceEEeccCcchhhcc---
Confidence 677899888887665666654 5788899999998775532 221111 11234579999999999887754
Q ss_pred ccceEEEEEecCCCCccchhhhHHHHHHHHHHHHHHhhhhhhh
Q 011904 176 NTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSA 218 (475)
Q Consensus 176 ~g~~V~V~l~~p~~p~~D~s~~~L~l~Av~tV~~gs~ws~~~~ 218 (475)
...+++..+.-.+...|++.+..=--==.+++++++|-+|-.
T Consensus 162 -~~rvrl~vD~~~~~ty~y~~Ia~~~~en~vv~i~AH~DHW~~ 203 (486)
T COG4882 162 -AGRVRLWVDACVERTYDYNVIAVDGGENGVVLIGAHLDHWYT 203 (486)
T ss_pred -ceeEEEEEecccceeEEEEEEEecCCCCCceEEeechhhhhh
Confidence 245666666655555555422100000024555666555543
No 37
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.80 E-value=9 Score=39.26 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=32.5
Q ss_pred EEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc----ccccccC
Q 011904 108 IMVDRGNCKFTTKANIAEAAGASALLIINNQKE----LYKMVCD 147 (475)
Q Consensus 108 aLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~----l~~M~~~ 147 (475)
.+++||+|+..+|++-+|+-|-+|+|.-++... +..|..+
T Consensus 150 ~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~~~frlhymvap 193 (374)
T COG5540 150 RCNRRGNETEEDPTRERRRTRFKGVIRGSERNGETFRLHYMVAP 193 (374)
T ss_pred HHHHccCccccCccccchhccccceeeccccCCceEEEEEEecc
Confidence 356899999999999999999999999987653 3345554
No 38
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.27 E-value=10 Score=39.59 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=19.6
Q ss_pred hhhhhheeeeeeeccccchhHhhHHHH
Q 011904 331 FCIAFAVVWAIYRKVSFAWIGQDILGI 357 (475)
Q Consensus 331 ~~~~~~~~w~~~~~~~~~Wil~nilgi 357 (475)
=+++|+++|++++-.+--|++-|++.=
T Consensus 239 RlILF~I~~il~~g~~g~W~FPNL~eD 265 (372)
T KOG2927|consen 239 RLILFGITWILTGGKHGFWLFPNLTED 265 (372)
T ss_pred HHHHHHHHHHHhCCCCceEeccchhhh
Confidence 356778889988833336999998863
No 39
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.09 E-value=63 Score=24.97 Aligned_cols=54 Identities=22% Similarity=0.121 Sum_probs=25.2
Q ss_pred hccceEEEEEecCCCCccchhhhHHH--HHHHHHHHHHHhhhhhhhhHHHHHHHHhh
Q 011904 175 LNTSSVSVQLYSPRRPVVDVAEVFLW--LMAVGTILCASYWSAWSARETAIEQEKLL 229 (475)
Q Consensus 175 ~~g~~V~V~l~~p~~p~~D~s~~~L~--l~Av~tV~~gs~ws~~~~~~~~~~~~~~~ 229 (475)
++...|++.+..-..+ .-.+.+.+. ++++...++.+++..++.+.+.++..+++
T Consensus 2 qN~~~V~v~~~~~~~~-~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l 57 (68)
T PF06305_consen 2 QNTQPVTVNFLFGQFP-LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKEL 57 (68)
T ss_pred CCCceEEEEEEeeecc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788887655444 333333333 34444444444444444444333333333
No 40
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=33.43 E-value=1.3e+02 Score=27.25 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=45.8
Q ss_pred CCCCCeEEEEe--cCCCCHHHHHHHHHHcC-CcEEEEEeCCCcccccccCCCCCCCCcceeEEEeccchhhhHHHHhhcc
Q 011904 101 HKYAGDVIMVD--RGNCKFTTKANIAEAAG-ASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNT 177 (475)
Q Consensus 101 ~~l~g~IaLV~--RG~CsF~~Ka~~Aq~aG-A~avIV~n~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~g 177 (475)
.+++|||.+.. ||.|.=.-=...+.+.| |-+.|+.-..+......+- --.||.+-... ...+.+++|
T Consensus 47 ~~l~Gkilv~P~grGStvGSyVl~~l~~~G~AP~aIv~~e~EpIla~Gai------~a~iPlv~~~~----e~~~~l~~g 116 (131)
T COG1786 47 ESLTGKILVFPGGRGSTVGSYVLYELAKNGRAPAAIVNEEAEPILAVGAI------LAGIPLVDGVD----EFFEELKTG 116 (131)
T ss_pred ccccceEEEeeCCCCccccHHHHHHHHHcCCCchhhhhcCCcceeeehhh------hcCCceEeccH----HHHHHhccC
Confidence 47999999987 78888777777777777 4455554443333332221 11577665443 466778888
Q ss_pred ceEEEE
Q 011904 178 SSVSVQ 183 (475)
Q Consensus 178 ~~V~V~ 183 (475)
.+|++.
T Consensus 117 ~~v~v~ 122 (131)
T COG1786 117 DRVRVN 122 (131)
T ss_pred CEEEEc
Confidence 877664
No 41
>PF06541 DUF1113: Protein of unknown function (DUF1113); InterPro: IPR010540 This family consists of several bacterial proteins of unknown function.
Probab=32.03 E-value=2.4e+02 Score=25.98 Aligned_cols=26 Identities=15% Similarity=0.200 Sum_probs=18.6
Q ss_pred HHHhcccCchhHHHHHHHHHHhhhee
Q 011904 363 VLQIVHIPNLKVGTVLLSCAFMYDIF 388 (475)
Q Consensus 363 ~l~~i~l~~~k~~~iLL~~lf~YDIF 388 (475)
.++.+.-...+..++++..+|+.|+.
T Consensus 128 ~~~~i~~~~~~~~~~~l~~~~~~D~~ 153 (157)
T PF06541_consen 128 LLSKIPPIIRNILALVLLALFLIDFV 153 (157)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 34555555667788888899999974
No 42
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=28.56 E-value=2.4e+02 Score=23.01 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCeEEEEecC-----CCCHHHHHHHH-HHcCCcEEEEEeCCCc--cc-ccccCCCCCCCCcceeEEEeccc---hhhhHH
Q 011904 104 AGDVIMVDRG-----NCKFTTKANIA-EAAGASALLIINNQKE--LY-KMVCDPDETDLDIHIPAVMMPQD---AGASLE 171 (475)
Q Consensus 104 ~g~IaLV~RG-----~CsF~~Ka~~A-q~aGA~avIV~n~~~~--l~-~M~~~~~~~~~~i~IPvv~Is~~---~G~~L~ 171 (475)
+++|++...| .|.+..|++.. ++.|.. .-.+|-.++ .. .+.. ....-++|.++|... ..+.++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~-y~~idv~~~~~~~~~l~~----~~g~~tvP~vfi~g~~iGG~~~l~ 81 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD-FGTFDILEDEEVRQGLKE----YSNWPTFPQLYVNGELVGGCDIVK 81 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC-eEEEEcCCCHHHHHHHHH----HhCCCCCCEEEECCEEEeCHHHHH
Confidence 3578888776 89999999876 555644 334443221 11 1110 011246899998765 345566
Q ss_pred HHhhccc
Q 011904 172 KMLLNTS 178 (475)
Q Consensus 172 ~~l~~g~ 178 (475)
++.++|+
T Consensus 82 ~l~~~g~ 88 (90)
T cd03028 82 EMHESGE 88 (90)
T ss_pred HHHHcCC
Confidence 6555553
No 43
>PRK11588 hypothetical protein; Provisional
Probab=26.82 E-value=1.5e+02 Score=32.88 Aligned_cols=43 Identities=9% Similarity=0.371 Sum_probs=27.3
Q ss_pred eeeCccchhhHhHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHH
Q 011904 248 VDINTASAVLFVLVASCFLVMLYKLMS-NWFLELLVILFCIGGV 290 (475)
Q Consensus 248 ~~is~~~a~~fpv~as~~Ll~Ly~~~~-~~~~~ll~~~f~i~g~ 290 (475)
.++|.+|-+...++...+....|=..+ .|...=+..+|.+.|+
T Consensus 280 ~~~t~r~klvL~~f~~~~~~~i~Gv~~~gW~~~Eia~~Fl~~gi 323 (506)
T PRK11588 280 RPFTFGDWLVLLVLTAVMVWVIWGVVVNAWFIPEIASQFFTMGL 323 (506)
T ss_pred cCcChhhHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 479999988888877777777774432 3333334556655554
No 44
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=26.02 E-value=1.6e+02 Score=32.06 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=6.6
Q ss_pred ecccchhhHH
Q 011904 435 IGFGDILLPG 444 (475)
Q Consensus 435 LGlGDIviPG 444 (475)
=|+|+.+-|-
T Consensus 414 ~gl~n~isPt 423 (465)
T PF03606_consen 414 DGLGNSISPT 423 (465)
T ss_pred HHHHhhccch
Confidence 4677777773
No 45
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=23.82 E-value=1.5e+02 Score=22.68 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=33.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCc--c-cccccCCCCCCCCcceeEEEeccc
Q 011904 106 DVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE--L-YKMVCDPDETDLDIHIPAVMMPQD 165 (475)
Q Consensus 106 ~IaLV~RG~CsF~~Ka~~Aq~aGA~avIV~n~~~~--l-~~M~~~~~~~~~~i~IPvv~Is~~ 165 (475)
||.+..+-+|.+-.+++..-+.-....-.+|-+++ . ..+.. ......++|++++...
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~---~~~~~~~vP~v~i~g~ 60 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMIN---RSGGRRTVPQIFIGDV 60 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHH---HhCCCCccCEEEECCE
Confidence 47788888999999999875554445555553321 1 11110 0011236899988754
No 46
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=23.70 E-value=2.4e+02 Score=21.73 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=34.0
Q ss_pred CeEEEEecCCCCHHHHHHHH-HHcCCcEEEEEeCCCc------ccccccCCCCCCCCcceeEEEeccc
Q 011904 105 GDVIMVDRGNCKFTTKANIA-EAAGASALLIINNQKE------LYKMVCDPDETDLDIHIPAVMMPQD 165 (475)
Q Consensus 105 g~IaLV~RG~CsF~~Ka~~A-q~aGA~avIV~n~~~~------l~~M~~~~~~~~~~i~IPvv~Is~~ 165 (475)
|+|.|-.+-+|++-.||+.+ ++.|...- .+|-..+ +..+. ...++|++++...
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~-~~di~~~~~~~~el~~~~-------g~~~vP~v~i~~~ 60 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYV-EINIDIFPERKAELEERT-------GSSVVPQIFFNEK 60 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceE-EEECCCCHHHHHHHHHHh-------CCCCcCEEEECCE
Confidence 67889999999999999985 55565433 3453321 12221 1245788888754
No 47
>PRK10824 glutaredoxin-4; Provisional
Probab=21.21 E-value=2.9e+02 Score=24.25 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=40.8
Q ss_pred CCeEEEEecC-----CCCHHHHHHHH-HHcCCcEE-EEEeCCCccc-ccccCCCCCCCCcceeEEEeccc---hhhhHHH
Q 011904 104 AGDVIMVDRG-----NCKFTTKANIA-EAAGASAL-LIINNQKELY-KMVCDPDETDLDIHIPAVMMPQD---AGASLEK 172 (475)
Q Consensus 104 ~g~IaLV~RG-----~CsF~~Ka~~A-q~aGA~av-IV~n~~~~l~-~M~~~~~~~~~~i~IPvv~Is~~---~G~~L~~ 172 (475)
+++|++...| .|.|..|++.. .+.|...- +-++++++.. .|.. .....++|-++|... ..+.+.+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~----~sg~~TVPQIFI~G~~IGG~ddl~~ 89 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPK----YANWPTFPQLWVDGELVGGCDIVIE 89 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHH----HhCCCCCCeEEECCEEEcChHHHHH
Confidence 4789999998 89999999876 45565432 2222222211 1110 012357888888766 2344555
Q ss_pred Hhhccc
Q 011904 173 MLLNTS 178 (475)
Q Consensus 173 ~l~~g~ 178 (475)
+.++|+
T Consensus 90 l~~~G~ 95 (115)
T PRK10824 90 MYQRGE 95 (115)
T ss_pred HHHCCC
Confidence 555554
No 48
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=20.67 E-value=1.9e+02 Score=24.32 Aligned_cols=70 Identities=11% Similarity=0.176 Sum_probs=40.2
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHc-CCcEEEEEeCC--Cc---ccc-cccCCCCCCCCcceeEEEeccc---hhhhHHHH
Q 011904 104 AGDVIMVDRGNCKFTTKANIAEAA-GASALLIINNQ--KE---LYK-MVCDPDETDLDIHIPAVMMPQD---AGASLEKM 173 (475)
Q Consensus 104 ~g~IaLV~RG~CsF~~Ka~~Aq~a-GA~avIV~n~~--~~---l~~-M~~~~~~~~~~i~IPvv~Is~~---~G~~L~~~ 173 (475)
+.+|++..+-.|.|-.+++..-+. |..- -++|-+ ++ ... +.. .....++|.++|... ..+.+.++
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~-~~vdid~~~~~~~~~~~l~~----~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNP-AVHEIDKEPAGKDIENALSR----LGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCC-EEEEcCCCccHHHHHHHHHH----hcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 467999999999999999987544 5432 233422 11 111 110 012347899998864 22345555
Q ss_pred hhccc
Q 011904 174 LLNTS 178 (475)
Q Consensus 174 l~~g~ 178 (475)
.++|+
T Consensus 82 ~~~G~ 86 (99)
T TIGR02189 82 HISGS 86 (99)
T ss_pred HHcCC
Confidence 44443
No 49
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=20.39 E-value=1.6e+02 Score=22.65 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=32.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHc-CCcEEEEEeCCCcc--cccccCCCCCCCCcceeEEEeccc
Q 011904 106 DVIMVDRGNCKFTTKANIAEAA-GASALLIINNQKEL--YKMVCDPDETDLDIHIPAVMMPQD 165 (475)
Q Consensus 106 ~IaLV~RG~CsF~~Ka~~Aq~a-GA~avIV~n~~~~l--~~M~~~~~~~~~~i~IPvv~Is~~ 165 (475)
+|.+..+-+|.+-.|++.+-+. |.. .-.+|-+++. ..+.. .....++|++++...
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~-~~~~~v~~~~~~~~~~~----~~g~~~vP~ifi~g~ 59 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS-YEEIPLGKDITGRSLRA----VTGAMTVPQVFIDGE 59 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC-cEEEECCCChhHHHHHH----HhCCCCcCeEEECCE
Confidence 6889999999999999988554 544 3333432211 11100 012346898888754
Done!