Query 011905
Match_columns 475
No_of_seqs 627 out of 3060
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 06:31:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.8E-61 8.2E-66 488.3 54.0 379 71-458 419-799 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 4.4E-60 9.4E-65 480.5 54.2 411 56-472 367-778 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.5E-58 3.3E-63 466.5 46.6 399 59-473 87-487 (697)
4 PLN03081 pentatricopeptide (PP 100.0 5.9E-55 1.3E-59 440.4 42.8 398 55-472 119-518 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 5E-54 1.1E-58 443.7 44.7 396 58-472 252-649 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.8E-53 6E-58 438.2 42.4 398 58-472 50-448 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.5E-24 2.1E-28 222.7 52.2 385 70-472 511-895 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.4E-23 7.3E-28 218.5 50.7 376 71-463 444-819 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.7E-21 3.8E-26 184.9 36.0 298 105-411 46-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.6E-21 3.6E-26 185.1 35.3 304 136-449 42-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 4.7E-18 1E-22 169.5 43.8 323 70-405 54-381 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 2.7E-17 5.9E-22 164.5 45.6 364 99-472 132-566 (615)
13 PRK15174 Vi polysaccharide exp 99.9 3.8E-18 8.3E-23 170.1 39.1 345 98-456 46-395 (656)
14 PRK11447 cellulose synthase su 99.9 2.2E-17 4.8E-22 175.8 47.3 386 70-473 281-736 (1157)
15 PRK10049 pgaA outer membrane p 99.9 1.3E-16 2.7E-21 162.7 46.8 404 54-472 10-451 (765)
16 KOG4626 O-linked N-acetylgluco 99.9 1.3E-18 2.9E-23 159.0 28.7 361 93-471 115-479 (966)
17 TIGR00990 3a0801s09 mitochondr 99.8 3.1E-16 6.7E-21 157.0 47.4 361 70-443 139-572 (615)
18 PRK11447 cellulose synthase su 99.8 2E-16 4.3E-21 168.6 48.6 362 101-472 276-695 (1157)
19 KOG4626 O-linked N-acetylgluco 99.8 2.1E-17 4.5E-22 151.3 32.1 356 71-443 129-486 (966)
20 PRK14574 hmsH outer membrane p 99.8 3.3E-15 7.1E-20 149.7 48.1 191 277-471 298-507 (822)
21 PRK10049 pgaA outer membrane p 99.8 3.3E-15 7.2E-20 152.4 47.8 373 70-458 61-470 (765)
22 PRK14574 hmsH outer membrane p 99.8 1.1E-14 2.4E-19 145.9 44.5 403 61-474 37-476 (822)
23 KOG4422 Uncharacterized conser 99.8 6.4E-15 1.4E-19 129.5 35.0 362 106-473 127-586 (625)
24 KOG4422 Uncharacterized conser 99.8 2.1E-14 4.6E-19 126.3 33.3 364 92-462 205-610 (625)
25 PRK09782 bacteriophage N4 rece 99.8 4.3E-13 9.3E-18 137.5 47.8 222 237-472 480-701 (987)
26 PRK09782 bacteriophage N4 rece 99.7 1.5E-12 3.2E-17 133.6 43.0 345 108-470 356-733 (987)
27 TIGR00540 hemY_coli hemY prote 99.7 2.4E-13 5.2E-18 128.8 31.7 286 141-439 96-396 (409)
28 PRK10747 putative protoheme IX 99.7 4.6E-13 1E-17 126.2 33.0 283 142-441 97-389 (398)
29 KOG2076 RNA polymerase III tra 99.7 4.3E-12 9.3E-17 122.0 37.7 358 102-467 147-545 (895)
30 PRK10747 putative protoheme IX 99.7 1.1E-12 2.4E-17 123.7 33.8 285 107-405 97-390 (398)
31 PF13429 TPR_15: Tetratricopep 99.6 1.9E-15 4.2E-20 136.0 13.5 257 204-472 13-272 (280)
32 PF13429 TPR_15: Tetratricopep 99.6 2.9E-15 6.3E-20 134.9 13.3 160 237-400 113-272 (280)
33 COG2956 Predicted N-acetylgluc 99.6 2.7E-12 5.9E-17 109.3 29.9 287 107-405 48-347 (389)
34 TIGR00540 hemY_coli hemY prote 99.6 4.4E-12 9.4E-17 120.3 33.9 292 105-404 95-398 (409)
35 KOG2076 RNA polymerase III tra 99.6 2.1E-11 4.6E-16 117.3 35.0 325 139-472 149-507 (895)
36 COG2956 Predicted N-acetylgluc 99.6 1.6E-11 3.4E-16 104.7 29.5 302 131-447 38-352 (389)
37 KOG2003 TPR repeat-containing 99.6 1.9E-11 4E-16 108.8 30.1 379 74-465 217-711 (840)
38 COG3071 HemY Uncharacterized e 99.6 3.7E-11 7.9E-16 105.6 30.9 279 178-470 98-383 (400)
39 COG3071 HemY Uncharacterized e 99.5 2.2E-10 4.8E-15 100.8 34.2 286 107-404 97-389 (400)
40 KOG2002 TPR-containing nuclear 99.5 1.5E-10 3.3E-15 112.3 36.1 113 355-471 626-739 (1018)
41 KOG1155 Anaphase-promoting com 99.5 1.3E-09 2.7E-14 97.7 38.2 312 137-460 235-552 (559)
42 KOG1126 DNA-binding cell divis 99.5 1.1E-11 2.4E-16 115.6 25.1 285 144-446 334-624 (638)
43 KOG1155 Anaphase-promoting com 99.5 4.8E-10 1E-14 100.3 33.3 326 126-470 161-488 (559)
44 KOG1126 DNA-binding cell divis 99.5 1.1E-11 2.5E-16 115.5 22.1 275 179-470 334-613 (638)
45 KOG4318 Bicoid mRNA stability 99.5 1.2E-11 2.6E-16 118.6 22.3 85 86-182 17-101 (1088)
46 KOG2002 TPR-containing nuclear 99.5 4E-09 8.8E-14 102.8 39.6 315 145-469 252-585 (1018)
47 KOG0495 HAT repeat protein [RN 99.5 1.1E-08 2.3E-13 95.7 40.1 374 87-472 472-875 (913)
48 KOG0495 HAT repeat protein [RN 99.4 2.2E-08 4.8E-13 93.6 41.0 341 89-442 435-782 (913)
49 KOG1129 TPR repeat-containing 99.4 1.6E-11 3.5E-16 104.8 18.6 232 234-473 223-454 (478)
50 KOG1915 Cell cycle control pro 99.4 3.6E-08 7.8E-13 88.9 39.5 386 71-471 86-530 (677)
51 KOG4318 Bicoid mRNA stability 99.4 2E-11 4.4E-16 117.0 19.8 275 115-428 11-286 (1088)
52 TIGR02521 type_IV_pilW type IV 99.4 3.9E-10 8.5E-15 98.7 25.7 199 165-368 32-230 (234)
53 PRK12370 invasion protein regu 99.4 1.1E-09 2.4E-14 108.0 31.1 251 179-443 276-536 (553)
54 TIGR02521 type_IV_pilW type IV 99.4 6E-10 1.3E-14 97.6 26.4 200 199-404 31-231 (234)
55 PRK12370 invasion protein regu 99.4 1.1E-09 2.3E-14 108.1 29.8 268 126-406 253-536 (553)
56 PF13041 PPR_2: PPR repeat fam 99.3 3E-12 6.5E-17 81.2 6.5 50 269-318 1-50 (50)
57 KOG2003 TPR repeat-containing 99.3 2.1E-09 4.4E-14 96.1 26.0 279 138-428 428-709 (840)
58 PF13041 PPR_2: PPR repeat fam 99.3 3.8E-12 8.2E-17 80.8 6.5 49 197-245 1-49 (50)
59 KOG0547 Translocase of outer m 99.3 2E-08 4.2E-13 90.9 31.6 219 212-442 339-566 (606)
60 KOG1129 TPR repeat-containing 99.3 4.1E-10 8.9E-15 96.3 20.1 231 203-443 227-459 (478)
61 KOG1840 Kinesin light chain [C 99.3 4E-09 8.7E-14 99.5 27.8 244 197-440 197-477 (508)
62 PF12569 NARP1: NMDA receptor- 99.3 2.5E-08 5.4E-13 95.4 30.7 284 172-470 12-327 (517)
63 KOG1156 N-terminal acetyltrans 99.3 2E-07 4.4E-12 87.3 35.5 88 380-471 375-462 (700)
64 KOG1915 Cell cycle control pro 99.3 3.4E-07 7.5E-12 82.7 35.0 362 99-473 78-496 (677)
65 PF12569 NARP1: NMDA receptor- 99.3 5.6E-08 1.2E-12 93.0 32.4 258 102-369 12-290 (517)
66 KOG1840 Kinesin light chain [C 99.2 1.5E-08 3.3E-13 95.7 26.5 242 231-472 196-474 (508)
67 KOG1173 Anaphase-promoting com 99.2 6.1E-08 1.3E-12 89.4 28.0 284 91-386 241-532 (611)
68 KOG2047 mRNA splicing factor [ 99.2 1.8E-06 4E-11 81.0 37.6 167 237-404 390-578 (835)
69 KOG1174 Anaphase-promoting com 99.2 1.2E-06 2.6E-11 78.0 34.3 319 123-456 188-513 (564)
70 KOG0547 Translocase of outer m 99.2 1.9E-07 4.2E-12 84.6 29.3 359 102-472 123-561 (606)
71 KOG2376 Signal recognition par 99.2 1.7E-06 3.7E-11 80.5 35.9 382 70-470 24-513 (652)
72 KOG1173 Anaphase-promoting com 99.2 1.2E-07 2.6E-12 87.4 28.1 283 163-459 243-533 (611)
73 cd05804 StaR_like StaR_like; a 99.1 4.9E-07 1.1E-11 84.8 32.5 204 236-442 116-336 (355)
74 PRK11189 lipoprotein NlpI; Pro 99.1 2.6E-07 5.6E-12 83.6 28.7 198 235-443 65-266 (296)
75 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-07 2.6E-12 85.7 26.1 217 144-371 41-266 (296)
76 COG3063 PilF Tfp pilus assembl 99.1 1.3E-07 2.7E-12 77.7 22.6 194 237-438 38-232 (250)
77 COG3063 PilF Tfp pilus assembl 99.1 3.6E-07 7.9E-12 75.0 24.0 194 205-404 41-235 (250)
78 KOG4162 Predicted calmodulin-b 99.0 8.2E-06 1.8E-10 78.5 35.3 374 89-472 318-778 (799)
79 cd05804 StaR_like StaR_like; a 99.0 2.8E-06 6E-11 79.7 32.7 302 164-472 6-331 (355)
80 KOG1174 Anaphase-promoting com 99.0 4.4E-06 9.6E-11 74.5 29.7 272 124-406 227-501 (564)
81 KOG3785 Uncharacterized conser 99.0 4E-06 8.7E-11 73.2 28.7 340 106-470 69-450 (557)
82 KOG1156 N-terminal acetyltrans 99.0 3.7E-05 8E-10 72.7 36.7 380 70-468 53-502 (700)
83 KOG4340 Uncharacterized conser 99.0 2.9E-07 6.2E-12 78.3 20.6 193 99-303 15-210 (459)
84 PF04733 Coatomer_E: Coatomer 99.0 1E-07 2.3E-12 84.9 18.8 224 129-369 35-264 (290)
85 KOG3617 WD40 and TPR repeat-co 98.9 4.8E-06 1E-10 80.4 30.3 351 71-475 741-1172(1416)
86 PF04733 Coatomer_E: Coatomer 98.9 7.5E-08 1.6E-12 85.8 17.6 250 139-406 11-266 (290)
87 PRK04841 transcriptional regul 98.9 1.9E-05 4.2E-10 83.9 37.2 335 138-472 383-755 (903)
88 KOG2047 mRNA splicing factor [ 98.9 6.4E-05 1.4E-09 71.1 35.0 356 101-471 109-534 (835)
89 PRK04841 transcriptional regul 98.9 1.4E-05 3E-10 84.9 35.7 308 135-443 415-761 (903)
90 KOG0985 Vesicle coat protein c 98.8 4.8E-05 1E-09 75.4 33.3 82 235-326 1105-1186(1666)
91 KOG1070 rRNA processing protei 98.8 3.5E-06 7.6E-11 85.8 25.8 231 231-470 1455-1693(1710)
92 KOG1125 TPR repeat-containing 98.8 2.3E-06 4.9E-11 79.6 21.8 248 209-470 295-564 (579)
93 KOG0985 Vesicle coat protein c 98.8 7.7E-05 1.7E-09 74.0 33.1 249 139-440 1058-1306(1666)
94 KOG4162 Predicted calmodulin-b 98.8 0.00017 3.6E-09 69.8 34.3 341 93-443 356-784 (799)
95 KOG0624 dsRNA-activated protei 98.8 0.00011 2.4E-09 64.2 30.3 297 135-443 44-371 (504)
96 KOG3616 Selective LIM binding 98.7 9.6E-06 2.1E-10 77.5 24.8 327 88-473 583-933 (1636)
97 KOG4340 Uncharacterized conser 98.7 7.8E-06 1.7E-10 69.8 21.6 329 123-468 4-366 (459)
98 PF12854 PPR_1: PPR repeat 98.7 2.1E-08 4.6E-13 57.0 4.3 32 159-190 2-33 (34)
99 KOG3617 WD40 and TPR repeat-co 98.7 3.3E-06 7.2E-11 81.5 21.2 306 126-471 723-1103(1416)
100 KOG2376 Signal recognition par 98.7 0.00025 5.5E-09 66.5 34.6 321 103-439 88-517 (652)
101 PF12854 PPR_1: PPR repeat 98.7 2.1E-08 4.6E-13 57.0 4.0 28 231-258 4-31 (34)
102 KOG1125 TPR repeat-containing 98.7 3.3E-06 7.1E-11 78.6 20.0 255 171-435 292-564 (579)
103 KOG0548 Molecular co-chaperone 98.7 0.00017 3.7E-09 66.9 30.2 375 70-459 14-471 (539)
104 PLN02789 farnesyltranstransfer 98.7 4.3E-05 9.2E-10 69.3 26.1 209 102-318 45-267 (320)
105 KOG1070 rRNA processing protei 98.7 2.1E-05 4.6E-10 80.4 25.9 225 163-395 1457-1690(1710)
106 KOG1128 Uncharacterized conser 98.7 6.5E-06 1.4E-10 78.7 20.7 211 231-460 395-635 (777)
107 PLN02789 farnesyltranstransfer 98.6 0.00011 2.3E-09 66.7 28.0 166 215-387 88-266 (320)
108 KOG1128 Uncharacterized conser 98.6 2.8E-05 6.1E-10 74.5 24.6 213 169-404 403-615 (777)
109 KOG3785 Uncharacterized conser 98.6 2.4E-05 5.2E-10 68.5 22.2 330 92-442 119-490 (557)
110 TIGR03302 OM_YfiO outer membra 98.6 9.7E-06 2.1E-10 71.0 20.7 192 232-442 31-232 (235)
111 TIGR03302 OM_YfiO outer membra 98.6 5.4E-06 1.2E-10 72.7 18.9 56 279-334 174-231 (235)
112 PRK10370 formate-dependent nit 98.6 1.6E-05 3.4E-10 67.0 20.5 159 278-454 23-184 (198)
113 KOG3081 Vesicle coat complex C 98.6 0.00011 2.4E-09 62.1 24.2 152 240-404 114-270 (299)
114 KOG1914 mRNA cleavage and poly 98.6 0.0006 1.3E-08 63.5 34.5 405 57-472 18-496 (656)
115 KOG0548 Molecular co-chaperone 98.6 0.00019 4E-09 66.7 27.3 359 103-472 11-450 (539)
116 KOG0624 dsRNA-activated protei 98.6 0.00036 7.8E-09 61.2 27.2 296 163-469 37-362 (504)
117 KOG3081 Vesicle coat complex C 98.6 0.00016 3.6E-09 61.1 24.1 247 105-370 19-271 (299)
118 PRK14720 transcript cleavage f 98.5 0.00011 2.4E-09 74.4 27.3 169 128-336 30-199 (906)
119 KOG3616 Selective LIM binding 98.5 0.00057 1.2E-08 65.9 29.9 135 313-471 739-873 (1636)
120 COG5010 TadD Flp pilus assembl 98.5 5E-05 1.1E-09 64.1 20.2 158 275-438 70-227 (257)
121 PRK14720 transcript cleavage f 98.5 0.00011 2.4E-09 74.4 25.9 220 162-424 29-268 (906)
122 COG5010 TadD Flp pilus assembl 98.5 5E-05 1.1E-09 64.1 19.5 154 137-296 74-227 (257)
123 PRK15179 Vi polysaccharide bio 98.5 0.00014 3.1E-09 72.7 26.0 183 268-463 83-270 (694)
124 PRK15359 type III secretion sy 98.5 9.2E-06 2E-10 64.7 14.3 110 344-458 27-136 (144)
125 PRK10370 formate-dependent nit 98.4 7E-05 1.5E-09 63.1 19.6 119 177-300 52-173 (198)
126 COG4783 Putative Zn-dependent 98.4 0.00047 1E-08 63.5 25.0 117 316-438 316-433 (484)
127 PRK15179 Vi polysaccharide bio 98.4 6.3E-05 1.4E-09 75.2 21.1 133 127-262 84-216 (694)
128 COG4783 Putative Zn-dependent 98.4 0.00096 2.1E-08 61.5 25.9 111 210-326 317-428 (484)
129 PRK15359 type III secretion sy 98.3 4.4E-05 9.4E-10 60.8 15.3 92 169-262 29-120 (144)
130 KOG1127 TPR repeat-containing 98.2 0.0017 3.7E-08 65.0 25.0 183 108-299 472-658 (1238)
131 KOG3060 Uncharacterized conser 98.2 0.0013 2.9E-08 55.3 20.6 190 247-443 25-221 (289)
132 TIGR02552 LcrH_SycD type III s 98.2 8.3E-05 1.8E-09 58.7 13.5 92 169-262 22-113 (135)
133 TIGR00756 PPR pentatricopeptid 98.2 4.8E-06 1E-10 48.0 4.6 33 343-375 2-34 (35)
134 TIGR02552 LcrH_SycD type III s 98.2 0.00016 3.4E-09 57.1 14.9 97 200-300 18-114 (135)
135 PF09976 TPR_21: Tetratricopep 98.1 0.00024 5.1E-09 56.8 15.9 118 247-366 24-143 (145)
136 KOG2053 Mitochondrial inherita 98.1 0.011 2.4E-07 58.8 30.6 226 105-338 20-258 (932)
137 PF09976 TPR_21: Tetratricopep 98.1 0.00016 3.5E-09 57.8 14.4 126 309-439 15-144 (145)
138 KOG3060 Uncharacterized conser 98.1 0.004 8.6E-08 52.6 22.6 23 169-191 57-79 (289)
139 TIGR00756 PPR pentatricopeptid 98.1 5.8E-06 1.3E-10 47.6 4.5 33 415-447 2-34 (35)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00026 5.6E-09 65.6 17.3 120 311-438 174-293 (395)
141 PF13812 PPR_3: Pentatricopept 98.1 5.9E-06 1.3E-10 47.2 4.2 32 273-304 3-34 (34)
142 KOG1127 TPR repeat-containing 98.1 0.0078 1.7E-07 60.5 27.4 161 96-261 494-657 (1238)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00035 7.7E-09 64.7 17.6 122 169-298 174-295 (395)
144 PF13812 PPR_3: Pentatricopept 98.1 7.7E-06 1.7E-10 46.7 4.4 32 343-374 3-34 (34)
145 PF10037 MRP-S27: Mitochondria 98.0 8E-05 1.7E-09 69.3 12.4 124 124-247 61-186 (429)
146 PF10037 MRP-S27: Mitochondria 98.0 0.00011 2.4E-09 68.3 13.4 123 195-319 62-186 (429)
147 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00037 8.1E-09 53.4 14.0 99 343-443 4-106 (119)
148 KOG2053 Mitochondrial inherita 98.0 0.024 5.1E-07 56.6 39.0 227 65-301 16-256 (932)
149 PF08579 RPM2: Mitochondrial r 97.9 0.00024 5.1E-09 51.8 10.0 68 320-387 39-115 (120)
150 PF08579 RPM2: Mitochondrial r 97.9 0.00025 5.4E-09 51.7 10.0 76 278-353 32-116 (120)
151 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0013 2.7E-08 50.4 14.1 62 238-299 43-104 (119)
152 KOG1914 mRNA cleavage and poly 97.8 0.034 7.3E-07 52.3 37.8 188 250-442 309-501 (656)
153 PF01535 PPR: PPR repeat; Int 97.8 3.5E-05 7.7E-10 42.8 3.6 28 201-228 2-29 (31)
154 PF06239 ECSIT: Evolutionarily 97.8 0.0007 1.5E-08 55.9 12.0 103 269-390 45-152 (228)
155 PF01535 PPR: PPR repeat; Int 97.8 4.4E-05 9.5E-10 42.4 3.7 29 415-443 2-30 (31)
156 PF06239 ECSIT: Evolutionarily 97.7 0.00031 6.7E-09 57.9 9.6 72 143-214 66-153 (228)
157 cd00189 TPR Tetratricopeptide 97.7 0.00082 1.8E-08 48.7 11.0 95 344-442 3-97 (100)
158 PF12688 TPR_5: Tetratrico pep 97.7 0.0033 7.1E-08 47.7 13.9 109 347-459 7-117 (120)
159 PF14938 SNAP: Soluble NSF att 97.7 0.0073 1.6E-07 54.3 18.7 26 344-369 158-183 (282)
160 cd00189 TPR Tetratricopeptide 97.6 0.00091 2E-08 48.4 10.5 24 237-260 71-94 (100)
161 PRK02603 photosystem I assembl 97.6 0.0043 9.3E-08 51.2 15.4 62 308-369 37-100 (172)
162 PRK15363 pathogenicity island 97.6 0.0048 1E-07 48.7 14.2 94 167-262 38-131 (157)
163 PLN03088 SGT1, suppressor of 97.6 0.0031 6.6E-08 58.7 15.5 91 314-406 10-100 (356)
164 CHL00033 ycf3 photosystem I as 97.6 0.0022 4.7E-08 52.8 13.1 119 342-463 36-166 (168)
165 PF12895 Apc3: Anaphase-promot 97.6 0.00017 3.6E-09 51.4 5.6 81 354-438 2-83 (84)
166 PF05843 Suf: Suppressor of fo 97.6 0.0017 3.7E-08 58.1 13.2 130 166-300 3-136 (280)
167 PRK10866 outer membrane biogen 97.6 0.044 9.6E-07 47.9 22.6 57 170-228 38-98 (243)
168 PF14938 SNAP: Soluble NSF att 97.6 0.013 2.9E-07 52.7 18.7 96 240-335 120-225 (282)
169 PF04840 Vps16_C: Vps16, C-ter 97.5 0.062 1.4E-06 48.8 26.6 83 344-438 180-262 (319)
170 PF05843 Suf: Suppressor of fo 97.5 0.004 8.6E-08 55.8 14.7 129 201-334 3-135 (280)
171 KOG0550 Molecular chaperone (D 97.5 0.024 5.2E-07 51.5 18.6 51 139-190 59-109 (486)
172 KOG2041 WD40 repeat protein [G 97.5 0.095 2.1E-06 51.0 23.4 203 126-367 689-904 (1189)
173 PF12895 Apc3: Anaphase-promot 97.5 0.00041 8.8E-09 49.4 6.4 20 240-259 31-50 (84)
174 CHL00033 ycf3 photosystem I as 97.5 0.0042 9E-08 51.1 13.1 64 199-262 35-100 (168)
175 PRK02603 photosystem I assembl 97.5 0.012 2.6E-07 48.5 15.9 86 201-289 37-124 (172)
176 PRK10866 outer membrane biogen 97.5 0.06 1.3E-06 47.0 20.7 58 240-297 181-238 (243)
177 KOG0553 TPR repeat-containing 97.4 0.0034 7.3E-08 54.5 11.9 85 317-404 92-177 (304)
178 PLN03088 SGT1, suppressor of 97.4 0.0066 1.4E-07 56.5 15.0 91 171-263 9-99 (356)
179 PRK15363 pathogenicity island 97.4 0.017 3.6E-07 45.7 14.6 90 348-441 42-131 (157)
180 KOG2041 WD40 repeat protein [G 97.4 0.15 3.4E-06 49.6 23.1 277 136-443 767-1087(1189)
181 PF13525 YfiO: Outer membrane 97.3 0.054 1.2E-06 46.0 18.8 84 380-469 114-199 (203)
182 PF13432 TPR_16: Tetratricopep 97.3 0.0014 3.1E-08 43.8 7.0 57 384-443 5-61 (65)
183 PRK10153 DNA-binding transcrip 97.3 0.025 5.4E-07 55.2 17.9 62 342-405 421-482 (517)
184 PF13525 YfiO: Outer membrane 97.3 0.088 1.9E-06 44.7 19.3 51 382-432 147-197 (203)
185 PF12688 TPR_5: Tetratrico pep 97.3 0.039 8.5E-07 41.9 14.9 55 208-262 10-66 (120)
186 COG4235 Cytochrome c biogenesi 97.2 0.033 7.1E-07 48.7 16.1 105 340-449 155-262 (287)
187 PRK10153 DNA-binding transcrip 97.2 0.042 9.2E-07 53.6 18.8 138 301-443 332-483 (517)
188 COG3898 Uncharacterized membra 97.2 0.16 3.4E-06 46.1 28.5 283 142-442 97-392 (531)
189 PRK10803 tol-pal system protei 97.2 0.018 3.9E-07 50.8 14.2 97 344-442 146-246 (263)
190 PF03704 BTAD: Bacterial trans 97.2 0.026 5.7E-07 45.0 14.3 74 378-454 64-142 (146)
191 PF14559 TPR_19: Tetratricopep 97.1 0.0026 5.5E-08 43.0 6.7 53 388-443 3-55 (68)
192 PF14559 TPR_19: Tetratricopep 97.1 0.0022 4.8E-08 43.3 6.3 49 319-368 4-52 (68)
193 KOG2796 Uncharacterized conser 97.1 0.16 3.4E-06 43.6 18.6 132 166-300 179-315 (366)
194 KOG0553 TPR repeat-containing 97.1 0.0099 2.1E-07 51.7 11.1 101 281-385 91-191 (304)
195 PF04840 Vps16_C: Vps16, C-ter 97.1 0.23 5.1E-06 45.2 30.4 110 307-438 178-287 (319)
196 KOG2280 Vacuolar assembly/sort 97.0 0.39 8.4E-06 47.4 31.8 319 121-471 424-793 (829)
197 COG4700 Uncharacterized protei 97.0 0.13 2.9E-06 41.5 18.4 127 126-254 86-213 (251)
198 PF13414 TPR_11: TPR repeat; P 97.0 0.0048 1E-07 41.8 7.4 64 376-442 3-67 (69)
199 KOG1130 Predicted G-alpha GTPa 97.0 0.017 3.6E-07 52.4 12.1 134 308-442 197-344 (639)
200 PRK10803 tol-pal system protei 97.0 0.026 5.5E-07 49.8 13.3 99 202-300 146-246 (263)
201 PF13432 TPR_16: Tetratricopep 97.0 0.0046 1E-07 41.3 6.9 52 316-368 7-58 (65)
202 PF13281 DUF4071: Domain of un 96.9 0.19 4E-06 46.3 18.6 84 234-317 141-228 (374)
203 COG4700 Uncharacterized protei 96.9 0.17 3.8E-06 40.9 19.2 131 269-401 87-218 (251)
204 KOG2796 Uncharacterized conser 96.9 0.25 5.4E-06 42.4 19.2 131 274-405 180-315 (366)
205 PF13414 TPR_11: TPR repeat; P 96.8 0.011 2.3E-07 40.0 7.6 61 235-298 4-65 (69)
206 PF13371 TPR_9: Tetratricopept 96.7 0.015 3.2E-07 39.9 8.0 57 384-443 3-59 (73)
207 COG4235 Cytochrome c biogenesi 96.7 0.17 3.7E-06 44.4 15.7 100 269-370 154-256 (287)
208 KOG1130 Predicted G-alpha GTPa 96.7 0.019 4.1E-07 52.1 10.0 130 342-472 196-339 (639)
209 PF03704 BTAD: Bacterial trans 96.6 0.018 3.8E-07 46.0 9.2 70 236-308 64-138 (146)
210 PF12921 ATP13: Mitochondrial 96.6 0.04 8.6E-07 42.3 10.4 53 229-282 47-99 (126)
211 PF09205 DUF1955: Domain of un 96.6 0.21 4.5E-06 37.9 14.4 60 346-406 91-150 (161)
212 PF12921 ATP13: Mitochondrial 96.4 0.079 1.7E-06 40.7 10.8 50 301-350 47-97 (126)
213 PF04053 Coatomer_WDAD: Coatom 96.4 0.2 4.3E-06 47.9 15.6 134 94-260 295-428 (443)
214 KOG1538 Uncharacterized conser 96.4 0.68 1.5E-05 45.0 18.6 89 281-404 757-845 (1081)
215 PF13424 TPR_12: Tetratricopep 96.3 0.014 3.1E-07 40.6 6.1 64 378-441 7-74 (78)
216 COG4105 ComL DNA uptake lipopr 96.3 0.61 1.3E-05 40.2 17.7 157 282-438 45-229 (254)
217 KOG1585 Protein required for f 96.3 0.37 7.9E-06 40.9 14.5 146 87-258 24-174 (308)
218 PF13371 TPR_9: Tetratricopept 96.3 0.041 9E-07 37.6 8.0 53 316-369 5-57 (73)
219 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.2 2.6E-05 41.4 25.7 85 126-213 39-123 (660)
220 PF04053 Coatomer_WDAD: Coatom 96.1 0.28 6.1E-06 46.9 15.0 25 199-223 347-371 (443)
221 smart00299 CLH Clathrin heavy 96.1 0.53 1.1E-05 37.1 15.5 84 276-367 12-95 (140)
222 PF07079 DUF1347: Protein of u 96.0 1.4 3.1E-05 41.1 34.8 194 104-299 89-326 (549)
223 KOG3941 Intermediate in Toll s 96.0 0.076 1.7E-06 45.8 9.4 47 181-227 140-187 (406)
224 PF13281 DUF4071: Domain of un 95.9 1.4 3E-05 40.8 20.1 79 131-209 143-227 (374)
225 KOG1538 Uncharacterized conser 95.9 0.39 8.4E-06 46.6 14.7 196 114-334 620-845 (1081)
226 PF13424 TPR_12: Tetratricopep 95.8 0.042 9E-07 38.2 6.4 61 236-296 7-71 (78)
227 COG1729 Uncharacterized protei 95.8 0.25 5.5E-06 42.8 12.1 99 343-442 144-244 (262)
228 PF10300 DUF3808: Protein of u 95.8 0.69 1.5E-05 44.9 16.6 163 97-262 191-375 (468)
229 PRK15331 chaperone protein Sic 95.7 0.059 1.3E-06 42.9 7.4 92 347-442 43-134 (165)
230 smart00299 CLH Clathrin heavy 95.6 0.84 1.8E-05 36.0 16.0 34 107-141 20-53 (140)
231 PF10300 DUF3808: Protein of u 95.6 0.5 1.1E-05 45.8 14.9 153 309-464 191-356 (468)
232 KOG3941 Intermediate in Toll s 95.6 0.11 2.5E-06 44.8 9.1 88 231-320 64-172 (406)
233 COG3118 Thioredoxin domain-con 95.6 1.5 3.2E-05 38.6 16.8 145 138-286 143-287 (304)
234 PRK15331 chaperone protein Sic 95.5 0.99 2.1E-05 36.1 15.1 118 286-405 8-134 (165)
235 KOG0543 FKBP-type peptidyl-pro 95.5 0.3 6.5E-06 44.7 12.0 96 343-442 259-355 (397)
236 COG1729 Uncharacterized protei 95.5 0.43 9.4E-06 41.4 12.4 89 211-299 153-243 (262)
237 KOG1920 IkappaB kinase complex 95.5 4.1 8.9E-05 42.9 22.6 77 316-404 949-1027(1265)
238 PF13170 DUF4003: Protein of u 95.4 2 4.3E-05 38.7 19.3 129 181-311 79-222 (297)
239 KOG2280 Vacuolar assembly/sort 95.3 3.4 7.4E-05 41.2 29.8 325 89-438 427-795 (829)
240 KOG2610 Uncharacterized conser 95.2 0.6 1.3E-05 41.6 12.5 153 141-297 115-273 (491)
241 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.098 2.1E-06 48.9 8.0 98 340-445 74-177 (453)
242 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.62 1.3E-05 43.8 13.1 66 126-193 72-141 (453)
243 PF09205 DUF1955: Domain of un 95.1 1.1 2.4E-05 34.2 14.0 136 211-373 14-152 (161)
244 PF13428 TPR_14: Tetratricopep 94.9 0.086 1.9E-06 31.8 4.9 39 415-454 3-41 (44)
245 PF04184 ST7: ST7 protein; In 94.9 3.7 8E-05 39.1 17.5 56 312-367 265-321 (539)
246 KOG1920 IkappaB kinase complex 94.9 1.7 3.8E-05 45.5 16.3 84 344-441 942-1027(1265)
247 KOG0543 FKBP-type peptidyl-pro 94.7 0.52 1.1E-05 43.2 11.0 86 378-467 259-344 (397)
248 PF08631 SPO22: Meiosis protei 94.5 3.3 7.3E-05 37.1 25.1 19 422-440 255-273 (278)
249 PF13512 TPR_18: Tetratricopep 94.5 1.8 3.9E-05 33.8 12.4 73 281-353 20-94 (142)
250 PF07035 Mic1: Colon cancer-as 94.4 2.2 4.8E-05 34.5 16.5 29 224-252 19-47 (167)
251 COG3118 Thioredoxin domain-con 94.4 3.4 7.3E-05 36.5 16.7 144 315-463 143-287 (304)
252 PF04184 ST7: ST7 protein; In 94.3 2.3 5E-05 40.4 14.5 165 239-420 173-338 (539)
253 COG4105 ComL DNA uptake lipopr 94.1 3.5 7.6E-05 35.7 20.9 58 346-405 172-233 (254)
254 COG3629 DnrI DNA-binding trans 94.0 0.71 1.5E-05 40.7 10.3 61 343-404 155-215 (280)
255 KOG4555 TPR repeat-containing 94.0 1.4 3E-05 33.6 10.1 91 138-229 52-145 (175)
256 PF13512 TPR_18: Tetratricopep 94.0 2.4 5.2E-05 33.1 12.3 75 243-317 19-93 (142)
257 KOG4555 TPR repeat-containing 94.0 2.1 4.6E-05 32.6 11.7 54 243-299 52-105 (175)
258 PF07035 Mic1: Colon cancer-as 93.9 2.8 6.2E-05 33.9 14.5 135 184-334 14-148 (167)
259 COG3898 Uncharacterized membra 93.9 5.2 0.00011 36.8 32.8 284 105-405 95-392 (531)
260 KOG2114 Vacuolar assembly/sort 93.8 1.9 4.1E-05 43.5 13.5 175 168-367 338-516 (933)
261 COG3629 DnrI DNA-binding trans 93.5 0.9 2E-05 40.1 10.0 73 167-240 156-233 (280)
262 KOG2114 Vacuolar assembly/sort 93.5 4.9 0.00011 40.7 15.7 244 98-370 338-590 (933)
263 KOG2610 Uncharacterized conser 93.5 3.3 7.1E-05 37.2 13.1 157 175-335 114-276 (491)
264 KOG1941 Acetylcholine receptor 93.5 2.1 4.6E-05 38.7 12.1 166 202-367 86-272 (518)
265 PF10602 RPN7: 26S proteasome 93.3 1.7 3.7E-05 35.8 10.9 64 235-298 37-100 (177)
266 PRK11906 transcriptional regul 93.2 6.3 0.00014 37.4 15.4 148 287-439 274-433 (458)
267 COG4649 Uncharacterized protei 93.0 4 8.7E-05 32.9 13.7 53 246-299 70-122 (221)
268 PF13929 mRNA_stabil: mRNA sta 93.0 6.1 0.00013 35.0 14.3 147 97-246 134-290 (292)
269 KOG1585 Protein required for f 93.0 5.3 0.00012 34.2 16.1 54 344-398 193-249 (308)
270 KOG1550 Extracellular protein 92.7 12 0.00026 37.5 22.0 181 180-372 228-428 (552)
271 PF13428 TPR_14: Tetratricopep 92.7 0.45 9.8E-06 28.6 5.1 27 237-263 4-30 (44)
272 PF07079 DUF1347: Protein of u 92.7 9 0.0002 36.1 36.9 390 71-472 19-519 (549)
273 PRK09687 putative lyase; Provi 92.6 7.4 0.00016 34.9 27.0 136 233-386 141-277 (280)
274 PF10602 RPN7: 26S proteasome 92.5 3.2 6.9E-05 34.2 11.4 59 167-225 39-99 (177)
275 PF08631 SPO22: Meiosis protei 92.4 7.8 0.00017 34.8 26.8 18 455-472 253-270 (278)
276 PF13176 TPR_7: Tetratricopept 92.4 0.34 7.3E-06 27.6 4.0 26 415-440 1-26 (36)
277 COG0457 NrfG FOG: TPR repeat [ 92.3 6.4 0.00014 33.4 28.7 167 200-369 60-230 (291)
278 KOG1941 Acetylcholine receptor 92.3 8.8 0.00019 35.0 15.2 23 308-330 164-186 (518)
279 KOG0550 Molecular chaperone (D 92.2 9.9 0.00022 35.3 22.7 156 207-370 177-350 (486)
280 COG0457 NrfG FOG: TPR repeat [ 91.9 7.2 0.00016 33.1 29.6 227 212-443 36-266 (291)
281 PF13929 mRNA_stabil: mRNA sta 91.8 8.3 0.00018 34.1 13.4 148 62-211 134-290 (292)
282 KOG4570 Uncharacterized conser 91.8 3 6.6E-05 37.0 10.7 101 303-405 61-164 (418)
283 PF02259 FAT: FAT domain; Int 91.8 11 0.00024 35.0 21.9 192 170-369 4-212 (352)
284 PF13170 DUF4003: Protein of u 91.6 10 0.00022 34.3 22.2 130 287-420 78-224 (297)
285 COG5107 RNA14 Pre-mRNA 3'-end 91.4 13 0.00028 35.1 30.9 143 307-455 398-542 (660)
286 PF13431 TPR_17: Tetratricopep 91.3 0.36 7.9E-06 27.1 3.2 22 412-433 12-33 (34)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 90.8 2.9 6.3E-05 29.9 7.9 63 109-172 22-84 (103)
288 PF13176 TPR_7: Tetratricopept 90.8 0.68 1.5E-05 26.3 4.1 24 344-367 2-25 (36)
289 KOG4570 Uncharacterized conser 90.0 4.1 8.9E-05 36.2 9.8 50 285-334 114-163 (418)
290 PF11207 DUF2989: Protein of u 89.9 4.7 0.0001 33.6 9.7 42 212-253 153-197 (203)
291 PF13431 TPR_17: Tetratricopep 89.9 0.44 9.5E-06 26.8 2.7 32 436-468 2-33 (34)
292 PF02284 COX5A: Cytochrome c o 89.2 1.7 3.7E-05 31.4 5.8 64 109-173 25-88 (108)
293 PF02259 FAT: FAT domain; Int 88.9 20 0.00043 33.3 25.4 67 269-335 144-213 (352)
294 PF04097 Nic96: Nup93/Nic96; 88.8 29 0.00063 35.2 19.0 45 97-142 114-158 (613)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 88.5 5.6 0.00012 28.5 7.8 46 359-404 25-70 (103)
296 PF09613 HrpB1_HrpK: Bacterial 87.5 13 0.00029 29.8 13.0 51 106-158 22-73 (160)
297 PRK11906 transcriptional regul 87.2 28 0.00061 33.2 18.9 161 200-366 252-432 (458)
298 KOG0276 Vesicle coat complex C 87.2 11 0.00024 36.8 11.5 151 105-297 597-747 (794)
299 PF13374 TPR_10: Tetratricopep 87.2 1.6 3.4E-05 25.4 4.2 29 414-442 3-31 (42)
300 PF00515 TPR_1: Tetratricopept 87.2 1.8 3.9E-05 23.9 4.2 30 414-443 2-31 (34)
301 KOG0276 Vesicle coat complex C 86.8 13 0.00028 36.5 11.6 132 236-402 616-747 (794)
302 PF02284 COX5A: Cytochrome c o 86.7 10 0.00022 27.6 9.9 47 359-405 28-74 (108)
303 PF07719 TPR_2: Tetratricopept 86.7 2.2 4.7E-05 23.4 4.4 29 415-443 3-31 (34)
304 TIGR02561 HrpB1_HrpK type III 84.9 17 0.00038 28.6 10.5 101 342-451 8-115 (153)
305 PF13374 TPR_10: Tetratricopep 84.8 2.6 5.7E-05 24.4 4.4 28 235-262 3-30 (42)
306 PF11207 DUF2989: Protein of u 84.7 12 0.00027 31.2 9.3 82 208-291 116-198 (203)
307 COG4455 ImpE Protein of avirul 84.7 9.3 0.0002 32.2 8.5 77 308-385 3-81 (273)
308 PF00515 TPR_1: Tetratricopept 84.5 2.8 6.1E-05 23.1 4.2 26 344-369 4-29 (34)
309 COG4455 ImpE Protein of avirul 84.4 9.6 0.00021 32.2 8.5 56 168-224 5-60 (273)
310 COG4649 Uncharacterized protei 84.2 21 0.00045 29.0 15.0 140 92-232 57-200 (221)
311 PF10579 Rapsyn_N: Rapsyn N-te 84.0 2.4 5.1E-05 29.1 4.1 48 388-435 18-65 (80)
312 PF13181 TPR_8: Tetratricopept 83.9 3.2 6.9E-05 22.8 4.2 30 414-443 2-31 (34)
313 PF07163 Pex26: Pex26 protein; 83.6 14 0.00031 32.4 9.6 87 136-222 90-181 (309)
314 COG3947 Response regulator con 83.5 32 0.00069 30.6 16.1 101 159-261 222-340 (361)
315 PF07719 TPR_2: Tetratricopept 82.7 3.7 7.9E-05 22.5 4.2 25 344-368 4-28 (34)
316 KOG4648 Uncharacterized conser 82.5 9 0.00019 34.6 8.1 54 314-368 105-158 (536)
317 PF00637 Clathrin: Region in C 82.1 0.8 1.7E-05 36.2 1.6 84 347-439 13-96 (143)
318 TIGR02561 HrpB1_HrpK type III 82.0 23 0.00051 27.9 10.9 50 107-158 23-73 (153)
319 PF00637 Clathrin: Region in C 80.9 0.86 1.9E-05 36.0 1.4 82 102-190 15-96 (143)
320 PRK15180 Vi polysaccharide bio 80.9 54 0.0012 31.4 28.2 130 60-194 291-421 (831)
321 KOG1550 Extracellular protein 80.7 66 0.0014 32.3 25.5 17 141-157 261-277 (552)
322 PF09613 HrpB1_HrpK: Bacterial 80.3 29 0.00062 27.9 13.7 13 284-296 57-69 (160)
323 COG1747 Uncharacterized N-term 80.2 59 0.0013 31.5 22.0 179 93-281 65-249 (711)
324 KOG2066 Vacuolar assembly/sort 80.2 74 0.0016 32.6 26.2 151 101-262 363-533 (846)
325 TIGR03504 FimV_Cterm FimV C-te 80.2 4 8.7E-05 24.5 3.7 23 382-404 5-27 (44)
326 PRK09687 putative lyase; Provi 79.8 46 0.00099 29.9 28.7 235 197-460 35-279 (280)
327 PHA02875 ankyrin repeat protei 79.7 59 0.0013 31.1 14.8 209 106-340 11-229 (413)
328 COG3947 Response regulator con 79.4 46 0.00099 29.7 14.4 55 277-332 285-339 (361)
329 COG5159 RPN6 26S proteasome re 79.1 46 0.00099 29.5 11.2 23 310-332 129-151 (421)
330 PF07163 Pex26: Pex26 protein; 78.8 34 0.00074 30.2 10.2 89 239-329 88-181 (309)
331 PF11848 DUF3368: Domain of un 78.1 9 0.00019 23.5 4.9 35 423-457 12-46 (48)
332 PF13174 TPR_6: Tetratricopept 77.8 4 8.7E-05 22.1 3.2 20 349-368 8-27 (33)
333 COG1747 Uncharacterized N-term 77.7 72 0.0016 31.0 24.3 169 162-337 64-236 (711)
334 PF10345 Cohesin_load: Cohesin 77.3 89 0.0019 31.9 32.9 399 70-472 72-601 (608)
335 PF13174 TPR_6: Tetratricopept 77.2 3.7 8.1E-05 22.2 2.9 28 416-443 3-30 (33)
336 TIGR03504 FimV_Cterm FimV C-te 77.2 7 0.00015 23.5 4.1 21 206-226 6-26 (44)
337 PF13181 TPR_8: Tetratricopept 76.7 8.1 0.00018 21.1 4.3 27 236-262 3-29 (34)
338 PF13762 MNE1: Mitochondrial s 76.5 36 0.00077 26.9 9.5 80 132-211 42-127 (145)
339 KOG4077 Cytochrome c oxidase, 76.3 15 0.00033 27.9 6.4 61 110-171 65-125 (149)
340 COG4003 Uncharacterized protei 76.3 14 0.0003 25.3 5.7 54 400-454 17-71 (98)
341 COG2909 MalT ATP-dependent tra 76.3 1E+02 0.0023 32.1 29.3 225 211-438 427-684 (894)
342 KOG1258 mRNA processing protei 76.0 86 0.0019 31.0 29.1 186 232-427 295-489 (577)
343 KOG4234 TPR repeat-containing 76.0 46 0.00099 27.9 10.1 90 315-406 104-198 (271)
344 PF10366 Vps39_1: Vacuolar sor 75.9 28 0.0006 25.9 8.0 49 415-463 41-94 (108)
345 KOG2297 Predicted translation 75.3 62 0.0013 29.1 17.3 173 196-396 162-341 (412)
346 COG0735 Fur Fe2+/Zn2+ uptake r 75.3 15 0.00032 29.2 6.8 65 397-464 7-71 (145)
347 PF07721 TPR_4: Tetratricopept 74.8 5.2 0.00011 20.6 2.8 19 418-436 6-24 (26)
348 KOG1464 COP9 signalosome, subu 74.7 59 0.0013 28.6 17.5 68 124-191 21-92 (440)
349 KOG1258 mRNA processing protei 74.5 94 0.002 30.8 37.9 359 89-462 74-489 (577)
350 COG2976 Uncharacterized protei 74.4 50 0.0011 27.6 14.2 86 280-370 98-188 (207)
351 PF13762 MNE1: Mitochondrial s 73.9 42 0.00091 26.5 12.0 81 309-389 42-128 (145)
352 KOG2066 Vacuolar assembly/sort 73.3 1.2E+02 0.0025 31.3 24.5 154 136-299 363-533 (846)
353 PRK15180 Vi polysaccharide bio 72.9 44 0.00096 31.9 10.0 89 244-336 333-421 (831)
354 PHA02875 ankyrin repeat protei 72.5 78 0.0017 30.3 12.5 210 208-448 8-230 (413)
355 PF07575 Nucleopor_Nup85: Nup8 72.3 58 0.0013 32.8 11.8 61 272-334 406-466 (566)
356 PF10345 Cohesin_load: Cohesin 72.1 1.2E+02 0.0026 31.0 32.2 197 92-298 28-252 (608)
357 PF10579 Rapsyn_N: Rapsyn N-te 71.0 13 0.00028 25.6 4.7 47 246-293 18-65 (80)
358 COG2976 Uncharacterized protei 70.7 62 0.0013 27.0 16.0 89 348-443 96-189 (207)
359 KOG4077 Cytochrome c oxidase, 69.3 44 0.00095 25.5 7.4 47 359-405 67-113 (149)
360 COG4785 NlpI Lipoprotein NlpI, 68.7 74 0.0016 27.1 15.1 63 199-262 99-161 (297)
361 PF14689 SPOB_a: Sensor_kinase 68.6 20 0.00043 23.4 5.1 26 416-441 26-51 (62)
362 KOG4648 Uncharacterized conser 68.1 38 0.00082 30.9 8.1 53 241-296 104-156 (536)
363 KOG2396 HAT (Half-A-TPR) repea 68.0 1.2E+02 0.0026 29.4 21.7 283 71-369 264-558 (568)
364 cd08819 CARD_MDA5_2 Caspase ac 66.9 42 0.00092 23.7 7.4 38 426-468 49-86 (88)
365 smart00028 TPR Tetratricopepti 66.1 11 0.00024 19.4 3.3 28 415-442 3-30 (34)
366 cd00280 TRFH Telomeric Repeat 65.5 41 0.0009 27.6 7.2 20 138-157 120-139 (200)
367 TIGR02508 type_III_yscG type I 64.8 52 0.0011 24.0 7.8 50 174-229 49-98 (115)
368 KOG4234 TPR repeat-containing 64.4 86 0.0019 26.4 9.6 96 278-377 102-202 (271)
369 cd08819 CARD_MDA5_2 Caspase ac 63.4 50 0.0011 23.3 7.3 38 318-360 48-85 (88)
370 COG4785 NlpI Lipoprotein NlpI, 63.4 95 0.0021 26.5 19.4 64 164-228 99-162 (297)
371 PF14689 SPOB_a: Sensor_kinase 63.3 21 0.00045 23.3 4.5 26 379-404 26-51 (62)
372 PF12926 MOZART2: Mitotic-spin 63.1 50 0.0011 23.2 7.5 43 115-157 29-71 (88)
373 KOG1586 Protein required for f 62.9 1E+02 0.0022 26.7 20.5 26 313-338 161-186 (288)
374 PF06552 TOM20_plant: Plant sp 62.6 87 0.0019 25.8 8.8 111 322-443 7-137 (186)
375 COG5108 RPO41 Mitochondrial DN 61.5 77 0.0017 31.8 9.5 90 204-298 33-130 (1117)
376 PHA03100 ankyrin repeat protei 61.4 1.4E+02 0.0031 29.2 12.1 251 169-452 37-313 (480)
377 PF04097 Nic96: Nup93/Nic96; 61.1 2E+02 0.0043 29.4 17.5 60 133-193 115-181 (613)
378 KOG4567 GTPase-activating prot 60.7 50 0.0011 29.7 7.4 58 361-425 263-320 (370)
379 KOG2908 26S proteasome regulat 60.1 1.3E+02 0.0029 27.5 10.0 62 343-404 77-143 (380)
380 PF11848 DUF3368: Domain of un 60.0 38 0.00082 20.7 5.2 31 353-383 14-44 (48)
381 KOG0686 COP9 signalosome, subu 59.6 1.6E+02 0.0034 27.8 14.3 94 165-260 151-255 (466)
382 KOG4507 Uncharacterized conser 59.5 56 0.0012 32.2 8.1 57 170-227 648-704 (886)
383 PF10475 DUF2450: Protein of u 59.4 1.3E+02 0.0029 27.1 10.5 25 238-262 131-155 (291)
384 PF04190 DUF410: Protein of un 59.1 1.3E+02 0.0028 26.7 16.6 26 233-258 89-114 (260)
385 KOG2659 LisH motif-containing 59.1 1.2E+02 0.0025 26.1 9.3 98 126-225 23-129 (228)
386 KOG0403 Neoplastic transformat 58.3 1.8E+02 0.0038 27.9 18.0 59 379-440 512-570 (645)
387 PF08311 Mad3_BUB1_I: Mad3/BUB 58.1 38 0.00083 26.0 5.9 44 394-438 81-124 (126)
388 KOG0890 Protein kinase of the 57.7 4E+02 0.0086 31.8 25.2 63 376-443 1670-1732(2382)
389 KOG1464 COP9 signalosome, subu 57.5 1.4E+02 0.003 26.4 18.9 174 159-333 21-218 (440)
390 COG0735 Fur Fe2+/Zn2+ uptake r 57.5 58 0.0013 25.8 6.9 42 332-374 12-53 (145)
391 PF12862 Apc5: Anaphase-promot 57.2 58 0.0013 23.3 6.4 71 387-457 9-86 (94)
392 KOG2063 Vacuolar assembly/sort 57.2 2.7E+02 0.0058 29.7 21.1 116 131-246 506-638 (877)
393 PRK10564 maltose regulon perip 57.1 23 0.00051 31.6 5.0 28 380-407 261-288 (303)
394 COG5187 RPN7 26S proteasome re 57.1 1.5E+02 0.0032 26.6 13.9 26 342-367 116-141 (412)
395 PF11846 DUF3366: Domain of un 56.9 62 0.0013 27.0 7.5 32 231-262 141-172 (193)
396 PF11846 DUF3366: Domain of un 56.8 34 0.00074 28.6 5.9 32 126-157 141-172 (193)
397 PF14669 Asp_Glu_race_2: Putat 56.6 1.2E+02 0.0025 25.4 14.1 85 344-438 110-206 (233)
398 COG5108 RPO41 Mitochondrial DN 56.2 76 0.0016 31.9 8.5 46 99-144 33-80 (1117)
399 PRK10564 maltose regulon perip 55.5 26 0.00057 31.3 5.0 41 197-237 254-295 (303)
400 PF06552 TOM20_plant: Plant sp 55.4 74 0.0016 26.2 7.1 14 231-244 110-123 (186)
401 KOG2908 26S proteasome regulat 54.9 1.7E+02 0.0038 26.8 10.4 73 310-382 79-162 (380)
402 PRK12798 chemotaxis protein; R 54.6 2E+02 0.0043 27.4 17.2 158 284-443 125-287 (421)
403 PF08424 NRDE-2: NRDE-2, neces 54.2 1.8E+02 0.0039 26.8 16.5 77 182-260 49-128 (321)
404 PF09868 DUF2095: Uncharacteri 53.9 56 0.0012 24.3 5.5 43 418-461 66-108 (128)
405 KOG4567 GTPase-activating prot 53.6 97 0.0021 27.9 8.0 57 219-282 263-319 (370)
406 KOG4642 Chaperone-dependent E3 53.6 1.5E+02 0.0033 25.8 9.3 120 316-439 20-143 (284)
407 PF10366 Vps39_1: Vacuolar sor 53.1 93 0.002 23.1 7.5 26 344-369 42-67 (108)
408 KOG0890 Protein kinase of the 52.7 4.8E+02 0.01 31.2 24.0 309 135-472 1389-1726(2382)
409 KOG0687 26S proteasome regulat 52.7 1.9E+02 0.004 26.5 13.7 96 343-440 106-208 (393)
410 PF11663 Toxin_YhaV: Toxin wit 52.5 17 0.00036 28.1 2.9 31 283-315 107-137 (140)
411 cd00280 TRFH Telomeric Repeat 52.1 1.2E+02 0.0027 25.0 7.8 22 241-262 118-139 (200)
412 KOG2659 LisH motif-containing 51.5 1.6E+02 0.0034 25.3 10.1 99 162-262 24-131 (228)
413 KOG2297 Predicted translation 51.3 1.9E+02 0.0041 26.2 16.4 175 123-326 160-341 (412)
414 PF04190 DUF410: Protein of un 51.2 1.8E+02 0.0038 25.8 18.2 21 385-405 150-170 (260)
415 KOG4507 Uncharacterized conser 50.3 1E+02 0.0022 30.5 8.3 103 353-459 619-721 (886)
416 PRK14956 DNA polymerase III su 48.8 2.6E+02 0.0056 27.5 10.8 37 198-234 247-283 (484)
417 KOG0686 COP9 signalosome, subu 48.2 2.5E+02 0.0054 26.6 14.2 93 130-224 151-254 (466)
418 PF09454 Vps23_core: Vps23 cor 48.1 64 0.0014 21.4 4.8 46 414-460 9-54 (65)
419 TIGR02508 type_III_yscG type I 47.9 1.1E+02 0.0024 22.5 8.7 58 138-202 48-105 (115)
420 PF03745 DUF309: Domain of unk 47.7 78 0.0017 20.7 5.8 16 176-191 11-26 (62)
421 KOG2422 Uncharacterized conser 46.5 3.1E+02 0.0068 27.3 16.2 57 348-404 349-406 (665)
422 PF11663 Toxin_YhaV: Toxin wit 46.4 23 0.00051 27.3 2.9 33 317-351 106-138 (140)
423 PF09868 DUF2095: Uncharacteri 45.9 88 0.0019 23.3 5.5 44 88-138 61-104 (128)
424 PRK11639 zinc uptake transcrip 45.7 1.3E+02 0.0028 24.5 7.4 36 427-462 39-74 (169)
425 PRK13342 recombination factor 45.6 2.8E+02 0.0062 26.6 17.4 140 249-407 152-301 (413)
426 smart00777 Mad3_BUB1_I Mad3/BU 44.8 1.4E+02 0.0031 22.9 8.2 44 431-474 81-125 (125)
427 KOG0292 Vesicle coat complex C 44.4 1.9E+02 0.0041 30.4 9.4 132 137-300 651-782 (1202)
428 PF11838 ERAP1_C: ERAP1-like C 44.1 2.5E+02 0.0055 25.6 22.4 84 250-336 146-231 (324)
429 COG2909 MalT ATP-dependent tra 44.1 4.2E+02 0.009 28.1 29.8 225 175-401 426-684 (894)
430 cd07153 Fur_like Ferric uptake 43.9 59 0.0013 24.3 4.9 47 419-465 6-52 (116)
431 KOG3364 Membrane protein invol 43.9 1.6E+02 0.0034 23.1 10.0 69 374-443 30-101 (149)
432 PRK11639 zinc uptake transcrip 43.3 1.7E+02 0.0036 23.9 7.7 57 298-355 18-74 (169)
433 PRK09462 fur ferric uptake reg 43.1 1.5E+02 0.0031 23.5 7.2 35 321-355 32-66 (148)
434 PRK10941 hypothetical protein; 43.0 2.5E+02 0.0053 25.1 10.6 78 379-459 184-262 (269)
435 smart00638 LPD_N Lipoprotein N 42.5 3.8E+02 0.0082 27.1 26.8 63 127-194 308-370 (574)
436 KOG2582 COP9 signalosome, subu 42.1 2.9E+02 0.0063 25.7 17.8 55 317-371 288-346 (422)
437 PF09454 Vps23_core: Vps23 cor 42.1 35 0.00076 22.6 2.9 31 164-194 8-38 (65)
438 smart00386 HAT HAT (Half-A-TPR 42.0 53 0.0011 17.1 4.1 15 391-405 2-16 (33)
439 PF10255 Paf67: RNA polymerase 41.5 51 0.0011 31.2 4.9 28 412-439 163-190 (404)
440 PRK13342 recombination factor 41.4 3.3E+02 0.0071 26.1 18.9 24 212-235 243-266 (413)
441 PF12862 Apc5: Anaphase-promot 40.8 1.3E+02 0.0029 21.4 6.7 23 240-262 47-69 (94)
442 PF11838 ERAP1_C: ERAP1-like C 40.7 2.8E+02 0.0062 25.2 19.0 109 287-400 146-261 (324)
443 PF02847 MA3: MA3 domain; Int 40.6 1.4E+02 0.0031 22.0 6.6 23 134-156 7-29 (113)
444 PF09670 Cas_Cas02710: CRISPR- 40.4 3.3E+02 0.0071 25.8 11.7 55 173-228 140-198 (379)
445 PF04762 IKI3: IKI3 family; I 40.3 4.7E+02 0.01 28.4 12.3 62 62-123 697-762 (928)
446 KOG0687 26S proteasome regulat 39.8 3E+02 0.0065 25.3 15.1 100 234-335 104-210 (393)
447 PRK09857 putative transposase; 39.8 2.6E+02 0.0057 25.3 9.0 64 311-375 211-274 (292)
448 PF01475 FUR: Ferric uptake re 39.6 51 0.0011 24.9 4.0 50 417-466 11-60 (120)
449 PRK09857 putative transposase; 39.5 2.1E+02 0.0045 26.0 8.3 65 380-447 210-274 (292)
450 PF11817 Foie-gras_1: Foie gra 38.5 1.9E+02 0.0042 25.3 7.9 61 236-297 180-244 (247)
451 COG2812 DnaX DNA polymerase II 38.5 2E+02 0.0043 28.5 8.5 87 33-124 137-228 (515)
452 PF14853 Fis1_TPR_C: Fis1 C-te 38.4 1E+02 0.0022 19.4 5.6 33 347-381 7-39 (53)
453 PF11817 Foie-gras_1: Foie gra 38.4 2.2E+02 0.0048 24.9 8.3 54 276-329 183-241 (247)
454 PRK09462 fur ferric uptake reg 37.0 1.4E+02 0.0031 23.6 6.3 34 145-178 33-66 (148)
455 PRK11619 lytic murein transgly 37.0 4.9E+02 0.011 26.9 35.0 343 79-438 84-464 (644)
456 PF07678 A2M_comp: A-macroglob 36.9 2.1E+02 0.0047 25.0 8.0 84 357-442 115-221 (246)
457 PF08311 Mad3_BUB1_I: Mad3/BUB 36.9 1.9E+02 0.0042 22.2 10.0 43 431-473 81-124 (126)
458 KOG0128 RNA-binding protein SA 36.6 5.3E+02 0.011 27.1 31.4 360 92-468 111-554 (881)
459 KOG0292 Vesicle coat complex C 36.1 5.6E+02 0.012 27.3 11.6 108 352-459 1002-1131(1202)
460 PRK14958 DNA polymerase III su 35.8 3.5E+02 0.0075 26.9 9.9 35 198-233 245-279 (509)
461 PRK06645 DNA polymerase III su 35.8 4E+02 0.0086 26.5 10.2 31 202-233 261-291 (507)
462 KOG1839 Uncharacterized protei 35.6 6.7E+02 0.014 28.0 12.2 157 281-437 942-1123(1236)
463 PF14669 Asp_Glu_race_2: Putat 35.3 2.7E+02 0.0059 23.4 14.4 55 311-365 137-205 (233)
464 PF02847 MA3: MA3 domain; Int 35.3 1.8E+02 0.004 21.4 6.8 18 242-259 10-27 (113)
465 PRK08691 DNA polymerase III su 35.1 3.1E+02 0.0067 28.4 9.4 99 104-205 175-286 (709)
466 KOG1839 Uncharacterized protei 34.8 5.9E+02 0.013 28.4 11.6 24 198-221 972-995 (1236)
467 KOG2034 Vacuolar sorting prote 34.7 5.8E+02 0.013 27.1 27.1 170 102-297 366-556 (911)
468 COG2178 Predicted RNA-binding 34.5 2.8E+02 0.006 23.3 9.2 20 171-190 36-55 (204)
469 KOG2063 Vacuolar assembly/sort 33.3 6.3E+02 0.014 27.1 17.6 27 201-227 506-532 (877)
470 PRK14951 DNA polymerase III su 32.4 5.7E+02 0.012 26.2 10.9 102 104-209 180-294 (618)
471 PF13934 ELYS: Nuclear pore co 32.3 3.3E+02 0.0072 23.5 14.9 173 287-474 26-199 (226)
472 PRK14958 DNA polymerase III su 31.8 5.3E+02 0.011 25.7 11.3 35 163-198 245-279 (509)
473 PF07575 Nucleopor_Nup85: Nup8 31.6 5.6E+02 0.012 25.9 19.7 62 375-440 404-465 (566)
474 PHA02989 ankyrin repeat protei 31.4 5.2E+02 0.011 25.5 12.4 278 184-472 16-310 (494)
475 KOG0376 Serine-threonine phosp 31.2 1.3E+02 0.0029 28.9 5.8 51 353-405 16-67 (476)
476 PF10155 DUF2363: Uncharacteri 31.2 2.5E+02 0.0053 21.7 10.8 114 108-227 3-126 (126)
477 PF04090 RNA_pol_I_TF: RNA pol 30.8 3.3E+02 0.0071 23.0 11.7 28 273-300 43-70 (199)
478 PRK10941 hypothetical protein; 30.6 4E+02 0.0086 23.8 10.9 61 202-263 184-244 (269)
479 COG2178 Predicted RNA-binding 30.4 3.3E+02 0.0071 22.9 10.6 16 425-440 133-148 (204)
480 PF08424 NRDE-2: NRDE-2, neces 30.4 4.4E+02 0.0094 24.3 19.8 118 288-407 48-185 (321)
481 PF09986 DUF2225: Uncharacteri 30.3 3.5E+02 0.0076 23.1 10.9 55 392-446 141-198 (214)
482 PF10475 DUF2450: Protein of u 30.2 4.2E+02 0.009 24.0 12.6 52 135-192 104-155 (291)
483 KOG3636 Uncharacterized conser 30.1 5.1E+02 0.011 24.9 15.2 91 225-318 174-272 (669)
484 KOG1308 Hsp70-interacting prot 30.0 54 0.0012 30.0 3.0 92 142-236 127-219 (377)
485 PF04762 IKI3: IKI3 family; I 29.9 7.6E+02 0.016 26.9 17.3 26 310-335 816-843 (928)
486 KOG2471 TPR repeat-containing 29.5 5.5E+02 0.012 25.2 17.1 109 351-461 250-382 (696)
487 cd07153 Fur_like Ferric uptake 29.4 1.5E+02 0.0032 22.1 5.0 36 285-320 14-49 (116)
488 PF15297 CKAP2_C: Cytoskeleton 29.4 4.7E+02 0.01 24.3 8.7 43 415-457 142-184 (353)
489 PF11768 DUF3312: Protein of u 29.2 5.8E+02 0.013 25.4 11.3 23 276-298 413-435 (545)
490 PRK07003 DNA polymerase III su 29.0 6E+02 0.013 26.9 10.3 29 166-195 248-276 (830)
491 PF03745 DUF309: Domain of unk 28.9 1.7E+02 0.0037 19.1 5.7 14 142-155 12-25 (62)
492 PLN03025 replication factor C 28.6 4.6E+02 0.01 24.0 13.5 32 120-153 171-202 (319)
493 COG0790 FOG: TPR repeat, SEL1 28.0 4.4E+02 0.0095 23.6 24.7 25 428-452 252-276 (292)
494 COG5187 RPN7 26S proteasome re 27.8 4.6E+02 0.0099 23.7 13.0 100 233-334 114-220 (412)
495 COG4003 Uncharacterized protei 27.7 2.1E+02 0.0047 19.8 5.2 27 103-130 40-66 (98)
496 PF02607 B12-binding_2: B12 bi 27.4 84 0.0018 21.4 3.2 31 426-456 14-44 (79)
497 KOG3807 Predicted membrane pro 27.1 5E+02 0.011 23.9 13.4 59 311-369 280-339 (556)
498 PRK14963 DNA polymerase III su 27.0 5.2E+02 0.011 25.7 9.4 33 200-233 243-275 (504)
499 PF15297 CKAP2_C: Cytoskeleton 26.8 5.2E+02 0.011 24.0 8.9 35 344-378 143-177 (353)
500 cd00045 DED The Death Effector 26.2 1.2E+02 0.0025 20.9 3.6 41 428-469 35-75 (77)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.8e-61 Score=488.26 Aligned_cols=379 Identities=19% Similarity=0.257 Sum_probs=259.7
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.+....|+++|..+.. |+..+|+.++..+++.++++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 419 ~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 419 QRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred CCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 3444455555444321 56666666777677777777777777777777777777777777777777777777777
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--C
Q 011905 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR--H 228 (475)
Q Consensus 151 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~ 228 (475)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+ .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 77777666666777777777777777777777777777776666667777777777777777777777777777654 4
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011905 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
|+.||..+|+.++.+|++.|++++|.++|++|.+ .+++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e--~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T 651 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHE--YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 5666777777777777777777777777777766 34566666777777777777777777777777777677777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777676677777777777777777777777777777666667777777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011905 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
.|++++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCP--NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777777777777776666655 66677777777777777777777777777777777777776666543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.4e-60 Score=480.52 Aligned_cols=411 Identities=17% Similarity=0.248 Sum_probs=391.1
Q ss_pred CCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHH
Q 011905 56 KLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV 134 (475)
Q Consensus 56 ~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (475)
..+...+..++.++ ..++...|+++|.++....-..++...+..++..+.+.+..+.|.++++.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 34445555566664 67899999999999976655667888888899999999999999999998864 89999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 011905 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 214 (475)
+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+.++.||..+|+.+|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765678999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011905 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (475)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011905 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
|..+|+.||.+|++.|++++|.++|++|.+.|+.| |..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P--dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP--TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999876 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHhHHhhccc
Q 011905 455 VEHLKKSGDEELITNLPK 472 (475)
Q Consensus 455 ~~~~~~~g~~~~a~~l~~ 472 (475)
+.+|.+.|+.+.|.++..
T Consensus 761 L~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 761 LVASERKDDADVGLDLLS 778 (1060)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 999999999999998764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-58 Score=466.46 Aligned_cols=399 Identities=16% Similarity=0.175 Sum_probs=355.4
Q ss_pred HHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011905 59 STCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 59 ~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 137 (475)
...+..++..+ ..+.+..|+++|.|+....++.|+..+|+.++..+.+.++.+.+.+++..|.+.|+.||..+|+.++.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 33566677665 67899999999999987777889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999975 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|+.+||.+|.+|++.|++++|+++|++|
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999989888999999999999999999999999988854 68888999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011905 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377 (475)
Q Consensus 298 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 377 (475)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 88889999999999999999999999999999998888888888888888888888888888888888885 47788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHH
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-KRIWLQGPYVDKIVE 456 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~ 456 (475)
+|+.||.+|++.|+.++|.++|++|.+.|+.| |..+|+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAP--NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 88888888888888888888888888888876 788888888888888888888888888875 588888888888888
Q ss_pred HHHhcCCHhHHhhcccc
Q 011905 457 HLKKSGDEELITNLPKI 473 (475)
Q Consensus 457 ~~~~~g~~~~a~~l~~~ 473 (475)
+|.+.|+.++|.++.+.
T Consensus 471 ~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 471 LLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 88888888888877653
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.9e-55 Score=440.41 Aligned_cols=398 Identities=17% Similarity=0.178 Sum_probs=364.2
Q ss_pred CCCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH
Q 011905 55 AKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK 133 (475)
Q Consensus 55 ~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (475)
..++...+..++..| ..++.+.+.+++..+ ...|+.|+..+|+.++..+.+.|+++.|.++|++|.+ ||..+|+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 357888899999987 567777888887655 4568999999999999999999999999999999854 7999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 011905 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 213 (475)
.+|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 011905 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (475)
++++|.++|++|.+ +|..+|+.++.+|++.|++++|.++|++|.+ .++.||..||+.++.+|++.|++++|.++
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD--SGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999864 5899999999999999999999999999988 45789999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011905 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 294 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 373 (475)
+..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999965 57788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEK-IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
||..||+.++.+|++.|++++|.++|+.|.+ .|+.| +..+|+.++++|++.|++++|.+++++| ++.|+..+|+
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~ 498 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP--RAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWA 498 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC--CccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHH
Confidence 9999999999999999999999999999986 57766 8889999999999999999999998765 6778888999
Q ss_pred HHHHHHHhcCCHhHHhhccc
Q 011905 453 KIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l~~ 472 (475)
.++.+|...|+.+.++++.+
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHH
Confidence 99999999998888876653
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5e-54 Score=443.71 Aligned_cols=396 Identities=18% Similarity=0.174 Sum_probs=280.2
Q ss_pred CHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHH
Q 011905 58 DSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136 (475)
Q Consensus 58 ~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 136 (475)
+...++.++..+ ..+....|+++|..+. ..++.|+..+|+.++..+.+.++.+.+.+++..|.+.|+.||..+|+.++
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 344455555543 4556666666666553 34667777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 777777777778777777764 6777788888888888888888888888877788888888888888888888888
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+++|++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE------KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC------CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888754 5777888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011905 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 297 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 376 (475)
|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|++.|++++|.++|+.+ .||.
T Consensus 481 m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~ 554 (857)
T PLN03077 481 MLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDV 554 (857)
T ss_pred HHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCCh
Confidence 875 5888888888888877777777777777777777776666555555555555555555555555544 3555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCChhhHHHHH
Q 011905 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML-KKRIWLQGPYVDKIV 455 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~l~ 455 (475)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNP--DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 555555555555556666666666555555544 55555555555555555666666665555 445555555555556
Q ss_pred HHHHhcCCHhHHhhccc
Q 011905 456 EHLKKSGDEELITNLPK 472 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l~~ 472 (475)
.+|.+.|+.++|.++.+
T Consensus 633 ~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 633 DLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHhCCCHHHHHHHHH
Confidence 66666665555555543
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-53 Score=438.20 Aligned_cols=398 Identities=16% Similarity=0.160 Sum_probs=281.7
Q ss_pred CHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHH
Q 011905 58 DSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136 (475)
Q Consensus 58 ~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 136 (475)
++...+.++..+ ..+....|+.+|..+. ..+..|+..+|..++..+.+.+..+.+..++..+.+.+..++...+|.++
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 444445555543 4666777777776654 34566677777777777777777777777777777777677777777777
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..|++.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|...|+.||..||+.++++|+..++++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 777777777777777777764 5677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+++|++
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777653 5667777777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011905 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 297 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 376 (475)
|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 777777777777777777777777777777777777777777777777777777777777777777777764 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
.+|+.+|.+|++.|++++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.++++.|.+.|+.++..+++.++.
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P--d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSP--DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 677777777777777777777777777776655 666777777777777777777777777777777777777777777
Q ss_pred HHHhcCCHhHHhhccc
Q 011905 457 HLKKSGDEELITNLPK 472 (475)
Q Consensus 457 ~~~~~g~~~~a~~l~~ 472 (475)
+|.+.|+.+.|.++.+
T Consensus 433 ~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 433 MYSKCKCIDKALEVFH 448 (857)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 7777777777766553
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=9.5e-24 Score=222.70 Aligned_cols=385 Identities=11% Similarity=0.022 Sum_probs=326.0
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|.+.+.-..... +.+...+..+...+...|+.+.|..+++.+.+.+ +.+...+..+...+.+.|++++|.
T Consensus 511 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHH
Confidence 4677888888877665432 3456777788888888899999999999887765 556777888888999999999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
.+++.+.+.. +.+...|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999987653 4577889999999999999999999999987654 4566778888899999999999999999988764
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011905 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
+.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+...+ |+..++
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 3467888899999999999999999999998753 4677788888899999999999999999988864 555778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011905 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389 (475)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 389 (475)
..+..++.+.|++++|.+.++.+.+... .+...+..+...|...|+.++|...|+++.+.. +.+...+..+...+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 8889999999999999999999988654 367888999999999999999999999999764 45678888999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhh
Q 011905 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
|+ .+|+.+++++.+.. | .+..++..+...+...|++++|.++++++++.+ +.++.++..+..++.+.|+.++|.+
T Consensus 818 ~~-~~A~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA--P-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred Cc-HHHHHHHHHHHhhC--C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99 88999999998864 2 366778889999999999999999999999988 5689999999999999999999998
Q ss_pred ccc
Q 011905 470 LPK 472 (475)
Q Consensus 470 l~~ 472 (475)
+++
T Consensus 893 ~~~ 895 (899)
T TIGR02917 893 ELD 895 (899)
T ss_pred HHH
Confidence 875
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=3.4e-23 Score=218.54 Aligned_cols=376 Identities=12% Similarity=0.046 Sum_probs=197.9
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.++.+.|..++.-... ..+.+...+..+...+...++++.|.+.++.+.+.. +.+...+..+...+...|++++|.+
T Consensus 444 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 444 SGQFDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444455544443322 223344555555566666666666666666655543 3344455555555666666666666
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011905 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
.|+.+.+.+ +.+..++..+...+.+.|+.++|...++++...+ +.+...+..+...+.+.|++++|..+++.+.+..
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 666655433 2345555555566666666666666666554433 3344455555555555666666666665555432
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+.+...|..+..+|.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..++.
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 3345555556666666666666666666555432 2344455555555555666666666665555432 22344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+...+...|++++|.++++.+.+... .+...+..+...+...|++++|.+.|+++.+. .|+..++..+..++.+.|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCC
Confidence 555555555555555555555554432 23344555555555555555555555555543 233344444555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011905 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
+.++|.+.++.+.+.. +.+...+..+...|...|++++|.++|+++++.. +.++..+..+...+.+.|+
T Consensus 751 ~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred CHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 5555555555555432 1244455555555555555555555555555544 3444444444444444444
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.7e-21 Score=184.91 Aligned_cols=298 Identities=13% Similarity=0.108 Sum_probs=170.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC---HhhHHHHHHHHHhcCChh
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD---TIIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~ 181 (475)
...++++.|...++.+.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44566666777777766654 34455666666666667777777777766665321111 234566666666666777
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCChHHHHHHH
Q 011905 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN----LVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 182 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
.|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7776666665532 34455666666666666666666666666665442221 113344555566666666666666
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011905 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 337 (475)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|.+.|++++|...++.+.+..
T Consensus 204 ~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 204 KKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 6665532 223445555566666666666666666666554322223445555666666666666666666665543
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCC
Q 011905 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL---GGQVLEGFCLYEDIEKIGFLSSV 411 (475)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 411 (475)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|.|
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 33334455566666666666666666665543 4555555555554443 33556666666666655554433
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.6e-21 Score=185.07 Aligned_cols=304 Identities=14% Similarity=0.071 Sum_probs=252.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC---hhhHHHHHHHHHhc
Q 011905 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD---IITYVSMIKGFCNA 212 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 212 (475)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...+.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 335567899999999999999865 34667899999999999999999999999987532221 25678889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHhcCCHHH
Q 011905 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN---VVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 289 (475)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+. ..+. ...+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999998763 44678899999999999999999999999987531 1111 2245667778899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 3346678888899999999999999999999865443356788999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCC
Q 011905 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR---KNHSVEAAKLARFMLKKRIWL 446 (475)
Q Consensus 370 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~ 446 (475)
. .|+...+..+...+.+.|++++|..+++++.+.. | +...++.++..+.. .|+.++++.++++|.++++.|
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P--~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH--P--SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--c--CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 6 5777777888999999999999999999998863 3 66788888877764 569999999999999998888
Q ss_pred Chh
Q 011905 447 QGP 449 (475)
Q Consensus 447 ~~~ 449 (475)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 776
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=4.7e-18 Score=169.47 Aligned_cols=323 Identities=12% Similarity=0.086 Sum_probs=186.3
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|+.++.-...... ........+.......|+++.|...++.+.+.. +-+...+..+...+.+.|++++|.
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred hcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666554433221 122233333344445667777777777666654 445556666666666677777777
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
..+++..+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+..
T Consensus 131 ~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 131 DLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 7777666542 2345566666666667777777777666654432 1222222222 23556677777777666665543
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC
Q 011905 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE----ALGILDRMEALGCAPN 305 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~ 305 (475)
..++...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++ |...|++..+.. +.+
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~ 283 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDN 283 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCC
Confidence 22333344445556666677777777777666532 3345556666666666666664 566666666542 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 011905 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA-CSVMIR 384 (475)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~ 384 (475)
...+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|...|+++.+. .|+... +..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 556666666666677777777777666665432 3444555666666677777777777666654 343322 222344
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011905 385 ELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~ 405 (475)
++...|+.++|...|++..+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 566667777777777666664
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.7e-17 Score=164.50 Aligned_cols=364 Identities=12% Similarity=-0.033 Sum_probs=262.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcC
Q 011905 99 RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178 (475)
Q Consensus 99 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 178 (475)
.....+...++++.|+..++...+. .|+...|..+..+|.+.|++++|++.++...+.+ +.+...|..+..++...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 3344556667777777777776654 4566667777777777777888887777776653 235566777777777777
Q ss_pred ChhHHHHHHHHhccCC----------------------------C-CCChhhHHHH------------------------
Q 011905 179 DMIAADELMKGMGLID----------------------------L-YPDIITYVSM------------------------ 205 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~----------------------------~-~~~~~~~~~l------------------------ 205 (475)
++++|+..|......+ . +++...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 7777765543322110 0 0000000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHHHHHHCC-C-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH
Q 011905 206 ------IKGF------CNAGRLEDACGLFKVMKRHG-C-AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271 (475)
Q Consensus 206 ------i~~~------~~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (475)
+... ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+.. +...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~---P~~~ 365 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD---PRVT 365 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcH
Confidence 0000 12357889999999988764 2 2345678888888999999999999999998743 3346
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011905 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
..|..+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|...|++.++.+.. +...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 678888889999999999999999988763 345778888999999999999999999999887643 466677888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---ch-hhHHHHHHHHHhcC
Q 011905 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV---DS-DIHSVLLLGLCRKN 427 (475)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~-~~~~~li~~~~~~g 427 (475)
.+.|++++|+..|++..+.. +-+...++.+...+...|++++|...|++..+....... +. ..++..+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999988652 234678888888999999999999999998876421100 00 11222222334469
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
++++|.+++++.+... +.+...+..+.+.+...|++++|.+.++
T Consensus 523 ~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 523 DFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998876 5556678899999999999999987664
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.8e-18 Score=170.10 Aligned_cols=345 Identities=11% Similarity=0.025 Sum_probs=275.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc
Q 011905 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177 (475)
Q Consensus 98 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 177 (475)
..++..+.+.|+++.|..+++...... +-+...+..++.++...|++++|...|+++.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 345667788899999999999988865 4455666667777788999999999999998864 34677888899999999
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 011905 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
|++++|.+.++++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999998753 445778888999999999999999999988776433 33344333 3488899999999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 011905 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE----AYQLIDKVV 333 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~~~ 333 (475)
+.+.+.. ..++...+..+...+...|++++|+..+++..... +.+...+..+...+...|++++ |...++...
T Consensus 201 ~~~l~~~--~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 201 RALLPFF--ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHhcC--CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9987742 12344455566778899999999999999998764 3457778889999999999986 899999998
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 011905 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412 (475)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 412 (475)
+.... +...+..+...+...|++++|...+++..+. .|+ ...+..+..++...|++++|...++.+.+.+ | .+
T Consensus 278 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P-~~ 351 (656)
T PRK15174 278 QFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--G-VT 351 (656)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c-cc
Confidence 87543 6778999999999999999999999999976 444 5567778889999999999999999999864 2 23
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
...+..+..++...|++++|.+.|+++++......+..|...+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~ 395 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLL 395 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHH
Confidence 34455567788999999999999999998764333444443333
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=2.2e-17 Score=175.82 Aligned_cols=386 Identities=10% Similarity=-0.003 Sum_probs=233.4
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCcc-CHHhHH------------HHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMK------------VIF 136 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~li 136 (475)
..++.+.|...|....... +.+...+..+...+.+.+++++|...++...+..... ....+. ...
T Consensus 281 ~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 3566667777776655432 2355666667777777777777777777766543211 111111 112
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...+. .++.+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 34566777777777777777653 2355566667777777777777777777776543 223333333333332 12233
Q ss_pred HHHHHHHHHHHCCCC--------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHH
Q 011905 217 DACGLFKVMKRHGCA--------ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (475)
+|..+++.+...... .....+..+...+...|++++|++.|++..+.. +.+...+..+...|.+.|+++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 333333222111000 001112223333444555555555555555432 223334444455555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHH--------------------------------------------HHHHHHHHhcCCHHH
Q 011905 289 EALGILDRMEALGCAPNRVTI--------------------------------------------STLIKGFCVEGNLDE 324 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~--------------------------------------------~~li~~~~~~~~~~~ 324 (475)
+|...++++.+... .+...+ ..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 55555555443211 111111 223344556666666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
|..+++. .+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+...|+.++|++.++.+.+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7666651 22345567778889999999999999999999763 23567888899999999999999999998877
Q ss_pred cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C---ChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011905 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW--L---QGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 405 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.. +.+...+..+..++...|++++|.+++++++..... + +...+..+...+...|+.++|.+.++.
T Consensus 666 ~~---p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 666 TA---NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred cC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 53 235667778888899999999999999999876422 2 224666778899999999999887653
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.3e-16 Score=162.67 Aligned_cols=404 Identities=9% Similarity=-0.001 Sum_probs=299.4
Q ss_pred cCCCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhH
Q 011905 54 KAKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132 (475)
Q Consensus 54 ~~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (475)
...+++..+..-+.-. ..++...|++.+.-... .-+.+...+..+...+...++++.|.++++...+.. +.+...+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3456777776666653 58999999988766543 123455567888889999999999999999988764 5567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 011905 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 212 (475)
..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 788889999999999999999998763 34566 8888999999999999999999998764 44566667788888889
Q ss_pred CCHHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhcCCCCCCcHH-HHH--
Q 011905 213 GRLEDACGLFKVMKRHGCAANL------VAYSALLDGIC-----RLGSM---ERALELLGEMEKEGGDCSPNVV-TYT-- 275 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~~-~~~-- 275 (475)
+..++|++.++.... .|+. .....++..+. ..+++ ++|++.++.+.+... ..|+.. .+.
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~-~~p~~~~~~~~a 239 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH-DNPDATADYQRA 239 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc-cCCccchHHHHH
Confidence 999999998886654 2221 11222233222 22334 778888888885311 122221 111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHH
Q 011905 276 --SVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVV 349 (475)
Q Consensus 276 --~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~ 349 (475)
..+..+...|++++|+..|+.+.+.+.. |+. .-..+..+|...|++++|...|+.+.+..... .......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 1134556779999999999999887532 332 22235678999999999999999987654321 1244666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011905 350 ELVRTKRLKEAEKLFSKMLASGV-----------KPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
++...|++++|..+++.+.+... .|+. ..+..+...+...|+.++|++.++++.... +.+...
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~---P~n~~l 395 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA---PGNQGL 395 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH
Confidence 88999999999999999886521 1232 244566677889999999999999998864 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+..+...+...|++++|++.+++.+... |.+...+......+.+.|++++|+.+++
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999999887 6667777788889999999999988764
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=1.3e-18 Score=159.00 Aligned_cols=361 Identities=14% Similarity=0.068 Sum_probs=240.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHH-HHH
Q 011905 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN-NVI 171 (475)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~-~ll 171 (475)
-.+.|..+..++..+|+++.|+.+++.+.+.. +-..+.|.-+..++...|+.+.|.+.|.+..+. .|+..... .+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 45678888889999999999999999988865 456788888888888899988998888887764 35544333 233
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCh
Q 011905 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN-LVAYSALLDGICRLGSM 250 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~ 250 (475)
..+-..|+.++|...+.+..+.. +-=...|..|...+-..|+...|++.|++..+.. |+ ...|-.|...|...+.+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcc
Confidence 33344677777777776665532 1224556677777777777777777777776653 22 45666677777777777
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLI 329 (475)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~ 329 (475)
++|...|.+..... +...+++..+...|...|+.+-|++.+++..+. .|+ ...|+.|..++-..|++.+|.+.+
T Consensus 269 d~Avs~Y~rAl~lr---pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR---PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred hHHHHHHHHHHhcC---CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 77777777666532 234555666666667777777777777776654 333 456777777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011905 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (475)
+..+..... .....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...+++..+..
T Consensus 344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-- 418 (966)
T KOG4626|consen 344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-- 418 (966)
T ss_pred HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--
Confidence 776664432 2445666777777777777777777766643 443 2455666666777777777777777766642
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 409 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
| .-...|+.+...|-..|+.++|+..+.+++..+ |.=...++.+...|..+|+.++|..-.
T Consensus 419 P-~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 419 P-TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred c-hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 2 245566777777777777777777777776665 444455666777777777776665544
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=3.1e-16 Score=156.95 Aligned_cols=361 Identities=13% Similarity=0.002 Sum_probs=277.5
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|...|....... |+...|..+...+...++++.|++.++...+.. +.+...|..+..++...|++++|+
T Consensus 139 ~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4688999999998876433 567788888888999999999999999988875 556778888899999999999998
Q ss_pred HHHHhcccCCC-----------------------------CCCHhhHHHH------------------------------
Q 011905 150 WVLRKMPEFDL-----------------------------RPDTIIYNNV------------------------------ 170 (475)
Q Consensus 150 ~~~~~m~~~~~-----------------------------~~~~~~~~~l------------------------------ 170 (475)
.-|......+- +++...+..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 76544321110 0000000000
Q ss_pred HHHH------HhcCChhHHHHHHHHhccCC-C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 171 IRLF------CEKGDMIAADELMKGMGLID-L-YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 171 l~~~------~~~g~~~~a~~~~~~m~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+... ...+++++|.+.|++....+ . +.....|+.+...+...|++++|+..++...+.. +-+...|..+..
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~ 373 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 0000 11257889999999988654 2 2345678888888899999999999999998863 224668888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 322 (475)
.+...|++++|...|+++.+.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999998853 4567889999999999999999999999998864 33567778888899999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHH
Q 011905 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL------ACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~ 396 (475)
++|...|+..++... .+...++.+...+...|++++|++.|++..+.....+.. .++.....+...|++++|.
T Consensus 450 ~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 450 ASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999987543 256788999999999999999999999988653211111 1122222334469999999
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+++++..+.. | .+...+..+...+.+.|++++|+++|++..+..
T Consensus 529 ~~~~kAl~l~--p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 529 NLCEKALIID--P-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHhcC--C-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999988864 2 355678999999999999999999999998765
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=2e-16 Score=168.62 Aligned_cols=362 Identities=10% Similarity=-0.008 Sum_probs=265.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCC-CHhhHH-----------
Q 011905 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-DTIIYN----------- 168 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~----------- 168 (475)
...+...++++.|...++...+.. +-+...+..+..++.+.|++++|+..|++..+..... ....|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345567899999999999998865 5578889999999999999999999999988754221 111121
Q ss_pred -HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011905 169 -NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 169 -~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
.....+.+.|++++|.+.|+++.... +.+...+..+...+...|++++|++.|++..+.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 22446778999999999999998764 4566778888999999999999999999998864 235666777777764 4
Q ss_pred CChHHHHHHHHHHHhcCCC------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011905 248 GSMERALELLGEMEKEGGD------CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 321 (475)
++.++|..+++.+...... .......+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 6789999988765432100 00112356678888999999999999999998864 2356677888999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------------
Q 011905 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS------------------------------- 370 (475)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------- 370 (475)
+++|...++++.+.... +...+..+...+...++.++|...++.+...
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999999875432 2333333333344444555544444332110
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 371 --------GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 --------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
....+...+..+...+.+.|+.++|+..++++.+.. +.+...+..++..|...|++++|.+.++...+.
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~---P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE---PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 012344556667777888899999999999888864 246788888889999999999999999988765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 443 RIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
. +.+......+..++...|++++|.++++
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4 4566677778888888999998887664
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=2.1e-17 Score=151.26 Aligned_cols=356 Identities=16% Similarity=0.071 Sum_probs=296.9
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH-HHHHHHHhcCCHHHHH
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAM 149 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~ 149 (475)
.++.+.|++.++.+..... .....|..+...+...|+.+.|.+.+.+..+. .|+..... .+-......|+..+|.
T Consensus 129 rg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7888999999888765442 35678888889999999999999999887775 45544433 3555667789999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
.-|.+..+.. +-=...|..|...+-..|+...|+..|++..+.+ +.=...|-.|...|...+.+++|+..|.+.....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 9999887753 1234678999999999999999999999998653 2236788899999999999999999999888764
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011905 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
+.....+..+...|...|.++.|+..|++..+.. +.=...|+.|..++-..|++.+|.+.+....... +-.....
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~---P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ---PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcC---CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 3357788889999999999999999999998853 2336789999999999999999999999988763 3346678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 011905 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCL 388 (475)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~ 388 (475)
+.|...|...|++++|..+|....+-... -...++.|...|-+.|++++|+..|++.+ .+.|+. ..|+.+-..|-.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHH
Confidence 89999999999999999999998875432 24568999999999999999999999998 457874 688899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|+++.|.+.+.+....+ | .-.+.++.|...|-..|+..+|+.-+++.++..
T Consensus 435 ~g~v~~A~q~y~rAI~~n--P-t~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQIN--P-TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hhhHHHHHHHHHHHHhcC--c-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999998865 2 357789999999999999999999999999876
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=3.3e-15 Score=149.75 Aligned_cols=191 Identities=9% Similarity=-0.004 Sum_probs=154.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHH
Q 011905 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----VSSGGCYSSLVVEL 351 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~ 351 (475)
.+-++...|++.++++.|+.|...|.+....+-..+..+|...+..++|..++..+..... .++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 4557788899999999999999888765666888999999999999999999999976542 22334457788899
Q ss_pred HhcCCHHHHHHHHHHHHHCC-------------CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHH
Q 011905 352 VRTKRLKEAEKLFSKMLASG-------------VKPDGLA-CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417 (475)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~-------------~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 417 (475)
...+++++|..+++++.+.. ..||-.. +..++..+...|++.+|++.++++.... |-|.....
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a---P~n~~l~~ 454 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA---PANQNLRI 454 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 99999999999999998731 1223322 3345667888999999999999998864 35889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.+...+...|++.+|.+.++.+.... |-+..+....+.++...|++.+|+.+.
T Consensus 455 ~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 455 ALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999997777775 677778888899999999999997765
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=3.3e-15 Score=152.36 Aligned_cols=373 Identities=9% Similarity=-0.011 Sum_probs=274.2
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|...+.-..... +.+...+..+...+...++.++|...++...+.. +.+.. +..+..++...|+.++|+
T Consensus 61 ~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al 136 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDEL 136 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHH
Confidence 5788899999888765542 3456667788888899999999999999998874 55666 888888999999999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh------hhHHHHHHHHH-----hcCCH---
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI------ITYVSMIKGFC-----NAGRL--- 215 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~~~~--- 215 (475)
..++++.+.. +.+...+..+..++...|..+.|++.++.... .|+. .....+++... ..+++
T Consensus 137 ~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~a 212 (765)
T PRK10049 137 RAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIA 212 (765)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHH
Confidence 9999999864 34666677788888899999999999987764 2331 11222333222 12234
Q ss_pred HHHHHHHHHHHHC-CCCcCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 011905 216 EDACGLFKVMKRH-GCAANLV-AY----SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 216 ~~a~~~~~~m~~~-g~~~~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (475)
++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+...+.+...+ +..+|...|++++
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~ 290 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHH
Confidence 7788888888864 2223221 11 1113455677999999999999988532122223333 5778999999999
Q ss_pred HHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---hhhHHHHHHHHH
Q 011905 290 ALGILDRMEALGCAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----------VSS---GGCYSSLVVELV 352 (475)
Q Consensus 290 a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~ 352 (475)
|+..|+++.+..... .......+..++...|++++|..+++.+..... .|+ ...+..+...+.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 999999987643211 134566677788999999999999999987632 122 234566778889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
..|+.++|+++++++.... +-+...+..+...+...|++++|++.+++..+.. | .+...+......+.+.|++++|
T Consensus 371 ~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--P-d~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--P-RNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--C-CChHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999998763 3346777888888999999999999999999865 3 4667788888889999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHH
Q 011905 433 AKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
..+++++++.. |+......+-+.+
T Consensus 447 ~~~~~~ll~~~--Pd~~~~~~~~~~~ 470 (765)
T PRK10049 447 DVLTDDVVARE--PQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 99999999875 4444444444433
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.1e-14 Score=145.94 Aligned_cols=403 Identities=11% Similarity=0.011 Sum_probs=284.2
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHH
Q 011905 61 CVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140 (475)
Q Consensus 61 ~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 140 (475)
.....+.....++...|+..|........-.+ +..+ .++.++...|+.++|+..++.... ..+........+...+.
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHH
Confidence 34555555568888888888877654332110 1233 677777788999999999988872 22333444444466888
Q ss_pred hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 141 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 220 (475)
..|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 8899999999999998865 335677777888888999999999999998765 4665556444444444566666999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHH--HHHHHHHh---------cCC---
Q 011905 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT--SVIQIFCG---------KGM--- 286 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~---------~g~--- 286 (475)
.++++.+.. +-+...+..++.++.+.|-...|.++..+-..- +.+....+- ..+.-..+ ..+
T Consensus 191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 999998875 336777888889999999998888777654321 112211110 00111111 122
Q ss_pred HHHHHHHHHHHHH-cCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 287 MKEALGILDRMEA-LGCAPNRV-----TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 287 ~~~a~~~~~~m~~-~~~~p~~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
.+.|+.-++.+.. .+-.|... ...-.+-++...|++.++.+.|+.+...+......+-..+.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 3445555555543 22223221 22234557788999999999999999888654566788899999999999999
Q ss_pred HHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCCch-hhHHHHHHHH
Q 011905 361 EKLFSKMLASG-----VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF-----------LSSVDS-DIHSVLLLGL 423 (475)
Q Consensus 361 ~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~-~~~~~li~~~ 423 (475)
..+|+.+.... ..++......|.-++...+++++|..+++.+.+... .|.+|- ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999997642 122344457889999999999999999999998321 222232 2344567778
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccccC
Q 011905 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~~ 474 (475)
...|+..+|.+.++++.... |-|..........+...|+...|++.++.+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 89999999999999998888 899999999999999999999999988753
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=6.4e-15 Score=129.51 Aligned_cols=362 Identities=16% Similarity=0.158 Sum_probs=206.5
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHHH--HHhcCCHHHH-HHHHHhcccCC-------------------CCCC
Q 011905 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL--CEKARLANEA-MWVLRKMPEFD-------------------LRPD 163 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A-~~~~~~m~~~~-------------------~~~~ 163 (475)
..+....+.-+++.|++.|++.++..--.|+.. |....++--| .+-|-.|.+.| .+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 345566666677777777777666665555552 2222211111 11122222211 1235
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
..+|..+|.++|+-...++|.+++++......+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|+++.+
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHH
Confidence 566777777777777777777777777666666777777777765433222 5666777777777777777777777
Q ss_pred HHhcCChHH----HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCC----CCHHHHH
Q 011905 244 ICRLGSMER----ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE-ALGILDRMEA----LGCA----PNRVTIS 310 (475)
Q Consensus 244 ~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~----p~~~~~~ 310 (475)
..+.|+++. |.+++.+|.+ .|+.|...+|..+|..+++.++..+ +..++.++.. ..++ -|...|.
T Consensus 283 ~akfg~F~~ar~aalqil~EmKe--iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKE--IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHH--hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 777776554 3455566666 5567777777777777777666543 3333333322 1111 1344556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGG----SVSS---GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 383 (475)
..|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|+-.-.-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 66666666666666666655544321 1111 1234455555666666666666666666555556666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-----------------CCCC-----------------------------------
Q 011905 384 RELCLGGQVLEGFCLYEDIEKIGF-----------------LSSV----------------------------------- 411 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~-----------------~~~~----------------------------------- 411 (475)
++....|.++-..++|..++..|- +|.+
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 666666666665555555554331 1111
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011905 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW----LQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.....+.+...+.+.|+.++|.+++....+++-+ |.......+++.-...++...|..+++.
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2344566666677888888888888877654321 3333334556666666666666666553
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=2.1e-14 Score=126.26 Aligned_cols=364 Identities=11% Similarity=0.109 Sum_probs=253.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 171 (475)
.+..+|..+|..+++-...+.|.+++.+........+..+||.+|.+-.-. ...++..+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 456678888888888888888888888888877788888888888754422 2267788888888888888999988
Q ss_pred HHHHhcCChhH----HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC----cCHHHHH
Q 011905 172 RLFCEKGDMIA----ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED-ACGLFKVMKR----HGCA----ANLVAYS 238 (475)
Q Consensus 172 ~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~g~~----~~~~~~~ 238 (475)
.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +.++ .|...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 88888887664 46677788888888888888888888888887654 3333333332 2222 2445667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC--CCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEG--GDCSPN---VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
..+..|.+..+.+-|.++-.-+.... ..+.|+ ..-|..+....|+....+.....|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 77888888888888888765544311 112233 2235567777788888888889999998877888889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CH--------HH-----HHHH-------HHHHHHCCC
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-RL--------KE-----AEKL-------FSKMLASGV 372 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~~-----A~~~-------~~~m~~~~~ 372 (475)
++....+.++-.-++|..++..|...+...-.-++..+++.. .. .. |..+ -.+|.+.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-- 518 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-- 518 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--
Confidence 999899999998899988888775554444444444454443 11 00 1111 1223333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011905 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS---VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
.-.....+.+.-.+.+.|+.++|.+++..+.+.+-.-+ .....| -+++.-.+.+....|...++-|...+.+.-..
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip-~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~ 597 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP-RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEG 597 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC-CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhH
Confidence 33445667777778999999999999999976543321 233344 56667778899999999999998887654444
Q ss_pred hHHHHHHHHHhcC
Q 011905 450 YVDKIVEHLKKSG 462 (475)
Q Consensus 450 ~~~~l~~~~~~~g 462 (475)
.-+.+...|.-..
T Consensus 598 La~RI~e~f~iNq 610 (625)
T KOG4422|consen 598 LAQRIMEDFAINQ 610 (625)
T ss_pred HHHHHHHhcCcCH
Confidence 5566666554433
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=4.3e-13 Score=137.49 Aligned_cols=222 Identities=10% Similarity=-0.003 Sum_probs=161.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011905 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 316 (475)
|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..++
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~----~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQR----QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHh----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 3333333333 4555666666665553 244333333344445788888888888876554 34444556666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
.+.|+.++|...++...+.+.. +...+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888888776522 2233333334444569999999999998865 577888888888999999999999
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+++..+.. +.+...++.+...+...|++++|++.+++.++.. |-++..+..+..++...|+.++|...++
T Consensus 630 ~~l~~AL~l~---Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 630 SDLRAALELE---PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999875 3477888889899999999999999999999887 7788889999999999999999887664
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=1.5e-12 Score=133.58 Aligned_cols=345 Identities=11% Similarity=0.014 Sum_probs=251.5
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccC--CCCCCHhhHHHHHHHHHhcCC---hhH
Q 011905 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIRLFCEKGD---MIA 182 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~---~~~ 182 (475)
+...++...++.|-+.. +-+......+--...+.|+.++|.++|+..... +-.++....+.++..|.+.+. ..+
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 34444444455554432 335555555555677889999999999988762 122344455577777777765 223
Q ss_pred HHHH-------------------------HHHhccCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 011905 183 ADEL-------------------------MKGMGLIDLYP--DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 183 a~~~-------------------------~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
+..+ +....... ++ +...|..+..++.. ++.++|...+.+.... .|+..
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 3222 22222111 33 56677777777776 8888999988877765 36655
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 315 (475)
....+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|...+++..+.+ +.+...+..+...
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 5444555667899999999999998663 3555556677888899999999999999998764 2233333344444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 394 (475)
....|++++|...+++.++... +...|..+..++.+.|++++|+..+++..+. .|+ ...+..+..++...|+.++
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 5566999999999999998664 5778999999999999999999999999976 454 5667777778999999999
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
|+..+++..+.. +.+...+..+..++...|++++|...+++.++.. +-+..+.....+......+++.+.+-
T Consensus 662 Ai~~l~~AL~l~---P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 662 SREMLERAHKGL---PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999864 3478899999999999999999999999999887 55556666777777777767666553
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=2.4e-13 Score=128.85 Aligned_cols=286 Identities=12% Similarity=0.033 Sum_probs=120.8
Q ss_pred hcCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh--hHHHHHHHHHhcCCHHH
Q 011905 141 KARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII--TYVSMIKGFCNAGRLED 217 (475)
Q Consensus 141 ~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~ 217 (475)
..|+++.|.+.+.+..+.. |+. ..+-....++.+.|+.+.|.+.+.+..+.. |+.. ........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 3455556655555544432 222 222223344445555555555555554321 2221 22223445555555555
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHH-HHHH---HHHhcCCHHHHHHH
Q 011905 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT-SVIQ---IFCGKGMMKEALGI 293 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~li~---~~~~~g~~~~a~~~ 293 (475)
|...++.+.+.. +-+..++..+...|.+.|++++|.+.+..+.+.+. .+...+. .-.. .....+..+++.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~---~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL---FDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 555555555543 22444555555555555555555555555555321 1222221 1111 11222222222223
Q ss_pred HHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 011905 294 LDRMEALGC---APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE--LVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 294 ~~~m~~~~~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~ 368 (475)
+..+.+... +.+...+..+...+...|+.++|.+++++..+.........+. ++.. ....++.+.+.+.++...
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHH
Confidence 333332211 1144444455555555555555555555555443322111000 1111 122344444555554444
Q ss_pred HCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 369 ASGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 369 ~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
+. .|+. .....+...+.+.|++++|.+.|+........| +...+..+...+.+.|+.++|.+++++.
T Consensus 327 k~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p--~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 327 KN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL--DANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred Hh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 2222 223344444455555555555555322222222 3334445555555555555555555543
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=4.6e-13 Score=126.18 Aligned_cols=283 Identities=13% Similarity=0.039 Sum_probs=177.2
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhh-HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH--HHHHHHHhcCCHHHH
Q 011905 142 ARLANEAMWVLRKMPEFDLRPDTII-YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV--SMIKGFCNAGRLEDA 218 (475)
Q Consensus 142 ~~~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a 218 (475)
.|++++|.+.+....+.. +++.. |-....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 578888887777655432 12222 222334446778888888888877653 34543332 235567777888888
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH------HHHHHHHHHHHhcCCHHHHHH
Q 011905 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV------VTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~ 292 (475)
...++.+.+.. +-+......+...|.+.|++++|.+++..+.+... ..+.. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888877765 33667777777888888888888888888877532 11111 122233333334444555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011905 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 372 (475)
+++.+... .+.+......+...+...|+.++|.+++++..+.... .. -.++.+....++.+++.+..+...+.
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~--~~--l~~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD--ER--LVLLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--HH--HHHHHhhccCCChHHHHHHHHHHHhh--
Confidence 55555432 2346666777777777777777777777777764332 21 12233334557777777777777765
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 373 KPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 373 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.|+ ...+..+.+.|.+.+++++|.+.|+.+.+.. | +...|..+...+.+.|+.++|.+++++.+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P--~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--P--DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 343 3445666677777777777777777777753 2 556667777777777777777777776654
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=4.3e-12 Score=122.00 Aligned_cols=358 Identities=11% Similarity=0.022 Sum_probs=277.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh
Q 011905 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 181 (475)
..+..+|+.+.|.+++.+..+.. +.....|-.|...|-+.|+.+++...+-.....+ +.|...|..+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 45566699999999999998876 6788899999999999999999998887665443 457789999999999999999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH----HHHHHHHHhcCChHHHHHHH
Q 011905 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY----SALLDGICRLGSMERALELL 257 (475)
Q Consensus 182 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~----~~ll~~~~~~g~~~~a~~~~ 257 (475)
.|.-.|.+..+.. +++...+---...|-+.|+...|..-|.++.+...+.|..-+ -.+++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998875 566666666678889999999999999999987433333333 33456677778889999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------------------CHHHHH
Q 011905 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP---------------------------NRVTIS 310 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---------------------------~~~~~~ 310 (475)
+.....+ +-..+...+++++..+.+...++.+......+......+ +... .
T Consensus 304 e~~~s~~-~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 304 EGALSKE-KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHhhc-cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 8887732 224566678899999999999999999988887622222 2222 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVS--SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
.++-++.+....+....+..........| +...|.-+..+|...|++++|+.+|..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23334455555556666666666666443 5678899999999999999999999999976555567788899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHh
Q 011905 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML--------KKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~l~~~~~~ 460 (475)
.|..+.|.+.++...... +.+...--.|...+-+.|+.++|.+.+..+. ..+..|+..........+.+
T Consensus 462 l~e~e~A~e~y~kvl~~~---p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA---PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HhhHHHHHHHHHHHHhcC---CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999999999864 2356667777788889999999999998854 23445666777777888888
Q ss_pred cCCHhHH
Q 011905 461 SGDEELI 467 (475)
Q Consensus 461 ~g~~~~a 467 (475)
.|+.++-
T Consensus 539 ~gk~E~f 545 (895)
T KOG2076|consen 539 VGKREEF 545 (895)
T ss_pred hhhHHHH
Confidence 8887763
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=1.1e-12 Score=123.68 Aligned_cols=285 Identities=11% Similarity=0.026 Sum_probs=221.9
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHH--HHHHHHHhcCChhHHH
Q 011905 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN--NVIRLFCEKGDMIAAD 184 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~ 184 (475)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|...++++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 599999998888755542122 222333344568899999999999999874 45554333 3367888999999999
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 011905 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 185 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
+.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998866 556788889999999999999999999999998755322 13334444445556677777777
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011905 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 337 (475)
+.+.+. .+.+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+...
T Consensus 253 ~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 253 KNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 777553 2457778888999999999999999999998874 445422 233444466999999999999988765
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
. |...+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3 6677889999999999999999999999965 799999999999999999999999999987653
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1.9e-15 Score=136.04 Aligned_cols=257 Identities=18% Similarity=0.157 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 204 SMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 204 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+ +-+...+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~---~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD---KANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccc-c
Confidence 33555566666666666664433332 12234444445555555666777777777666543 1234445555555 5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHH
Q 011905 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~ 361 (475)
..+++++|.++++...+.. ++...+...+..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666777776666554432 344555666666667777777777777665432 2335556666667777777777777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 362 KLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 362 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
+.+++.++. .|+ ......++..+...|+.+++.++++...+.. +.+...+..+..++...|++++|+.++++..
T Consensus 167 ~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 167 RDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHHHHhccccccccccccccccc
Confidence 777777755 443 5556666667777777777777777666653 1244566677777777777777777777777
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 441 KKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+.. +.|+.+...+..++...|+.++|.++.+
T Consensus 242 ~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 242 KLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHS-TT-HHHHHHHHHHHT-------------
T ss_pred ccc-cccccccccccccccccccccccccccc
Confidence 665 6677777777777777777777776654
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=2.9e-15 Score=134.92 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011905 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 316 (475)
+..++..+.+.++++++.++++.+... ...+.+...|..+...+.+.|+.++|++.+++..+.. +.|......++..+
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLL 190 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 333444444444444444444443321 1112333333344444444444444444444443321 11233333333344
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
...|+.+++.++++...+.. ..+...+..+..+|...|+.++|...|++..+.. +.|......+..++...|+.++|.
T Consensus 191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------
T ss_pred HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 44444444333333333322 1122233334444444444444444444443321 113333333444444444444444
Q ss_pred HHHH
Q 011905 397 CLYE 400 (475)
Q Consensus 397 ~~~~ 400 (475)
++.+
T Consensus 269 ~~~~ 272 (280)
T PF13429_consen 269 RLRR 272 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 4433
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=2.7e-12 Score=109.26 Aligned_cols=287 Identities=14% Similarity=0.131 Sum_probs=196.7
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH------hhHHHHHHHHHhcCCh
Q 011905 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT------IIYNNVIRLFCEKGDM 180 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~g~~ 180 (475)
.+++++|.++|-+|.+.. +-+.++.-+|.+.|.+.|..++|+.+.+.+.+. ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467888888888888743 445666667788888999999999999888763 432 2344566678888888
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCChHHHHHH
Q 011905 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN----LVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
|+|.++|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+-++. ...|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999988887654 34456677788888888888888888888887654433 23455666666667788888888
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011905 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 336 (475)
+.+..+.+ +..+.+--.+.+.+...|+++.|.+.++...+.+...-..+...|..+|...|+.++....+..+.+..
T Consensus 203 l~kAlqa~---~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQAD---KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhhC---ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88887753 233444445566777888888888888888877655556667777888888888888888888777754
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 011905 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL---GGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~ 405 (475)
..++. -..+.+.-....-.+.|...+.+-+.. +|+...+..+|..-.. -|...+....++.|...
T Consensus 280 ~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 43332 333434334444455566555555544 6787777777765432 23455555566666554
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=4.4e-12 Score=120.29 Aligned_cols=292 Identities=10% Similarity=-0.004 Sum_probs=212.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCH-HhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH--hhHHHHHHHHHhcCChh
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT--IIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~ 181 (475)
...|+++.|.+.+....+.. |+. ..+-....+..+.|+.+.|.+.+++..+.. |+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 45799999999998876653 443 333344567888999999999999987643 443 33444578888999999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH---HHhcCChHHHHHHHH
Q 011905 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG---ICRLGSMERALELLG 258 (475)
Q Consensus 182 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~ 258 (475)
.|.+.++.+.+.. +-+...+..+...+...|++++|.+++..+.+.++.+.......-..+ ....+..+++.+.+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999876 556778889999999999999999999999998754333221111122 233333333334444
Q ss_pred HHHhcCC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 259 EMEKEGG-DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT--I-STLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 259 ~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~-~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
.+.+... ..+.+...+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 4444210 012377888889999999999999999999998863 34331 1 1111222345788899999988887
Q ss_pred CCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 335 GGSVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 335 ~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6433 34 567788999999999999999999544434479999999999999999999999999998654
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=2.1e-11 Score=117.34 Aligned_cols=325 Identities=14% Similarity=0.024 Sum_probs=251.9
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 218 (475)
....|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-..-..+ +.|...|..+.....+.|+++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 333499999999999998865 4678899999999999999999998876654443 56778899999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHH
Q 011905 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV----TYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~ 294 (475)
.-.|.+.++.. +++...+-.-+..|-+.|+...|...|.++.+.. .+.|.. .-..++..+...++.+.|.+.+
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999875 4466666667788999999999999999999842 111222 2233466677788889999999
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------CCCChhhHHH
Q 011905 295 DRMEAL-GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------------------------SVSSGGCYSS 346 (475)
Q Consensus 295 ~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~ 346 (475)
+..... +-..+...++.++..+.+...++.|......+.... ..++..++ .
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 887652 334456678899999999999999998888776621 12222221 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+.-++......+...-+.....+..+.| +...|.-+..+|...|++.+|+.++..+....... +...|-.+..+|.
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~--~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ--NAFVWYKLARCYM 460 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc--chhhhHHHHHHHH
Confidence 3334445555555555555555555333 45678889999999999999999999999875432 6779999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..|.+++|++.+++.+... |.+...--.|...+.+.|+.|+|.+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 9999999999999999887 7777788889999999999999988764
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.6e-11 Score=104.72 Aligned_cols=302 Identities=14% Similarity=0.086 Sum_probs=221.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh------hHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII------TYVS 204 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~ 204 (475)
.|-.=++.+. .++.++|.+.|-+|.+.. +-+..+.-+|.+.|-+.|.+|+|+++...+.+ .||.. ....
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~q 112 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQ 112 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHH
Confidence 3333344444 456799999999998743 34556667888999999999999999998876 34432 3445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHHHHHHH
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYTSVIQI 280 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~li~~ 280 (475)
|.+-|...|-+|.|+.+|..+.+.| ..-......|+..|-...+|++|+++-+++.+.+. .+. ...|.-+...
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~--q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG--QTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC--ccchhHHHHHHHHHHHH
Confidence 6777889999999999999998865 33566788899999999999999999998888531 121 1224445555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
+....+++.|..++.+..+.+.. .+..--.+-+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 55678899999999988876422 33333455577888999999999999999988776678889999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH---hcCCHHHHHHHHH
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC---RKNHSVEAAKLAR 437 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~ 437 (475)
..++..+.+.. +....-..+........-.+.|..++.+-.... |+...+..++..-. ..|...+-+.+++
T Consensus 269 ~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~----Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr 342 (389)
T COG2956 269 LNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRK----PTMRGFHRLMDYHLADAEEGRAKESLDLLR 342 (389)
T ss_pred HHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC----CcHHHHHHHHHhhhccccccchhhhHHHHH
Confidence 99999998763 333334444444444556666776666555542 37788888887765 3466788888889
Q ss_pred HHHHcCCCCC
Q 011905 438 FMLKKRIWLQ 447 (475)
Q Consensus 438 ~m~~~~~~~~ 447 (475)
+|....+..+
T Consensus 343 ~mvge~l~~~ 352 (389)
T COG2956 343 DMVGEQLRRK 352 (389)
T ss_pred HHHHHHHhhc
Confidence 9987765443
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=1.9e-11 Score=108.82 Aligned_cols=379 Identities=12% Similarity=0.035 Sum_probs=225.1
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHh----HHHHHHHHHhcCCHHHHH
Q 011905 74 SQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM----MKVIFNLCEKARLANEAM 149 (475)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~ 149 (475)
...|+..+.......-|+.....--.+..++.+.+.+..|++.++...+.-...+-.+ .+.+--.+.+.|+++.|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 3455555555554444444333322333455566778888888877665432233333 333333677888888888
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh------------hHHHH------------
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII------------TYVSM------------ 205 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~l------------ 205 (475)
.-|+...+. .|+..+--.|+-++.-.|+.++..+.|.+|......||.. ..+..
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 888887764 4676654445555556788888888888776532222211 11110
Q ss_pred ---------------------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 011905 206 ---------------------------------------------------IKGFCNAGRLEDACGLFKVMKRHGCAANL 234 (475)
Q Consensus 206 ---------------------------------------------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 234 (475)
...+.+.|+++.|.++++-+.+..-+.-.
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 11233556666666666555443211111
Q ss_pred HHHHHHH------------------------------------HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011905 235 VAYSALL------------------------------------DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 235 ~~~~~ll------------------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
..-+.|- +.....|++++|.+.|.+...... .-+...-.+.
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda---sc~ealfnig 531 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA---SCTEALFNIG 531 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch---HHHHHHHHhc
Confidence 1111000 001123566666666666655211 1111111122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 358 (475)
-.+-..|+.++|++.|-.+..- +..+......+...|-...+...|.+++.+.... ++.|+.....|...|-+.|+-.
T Consensus 532 lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 532 LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchh
Confidence 3345566666666666655432 2234555666666677777777777776555432 2336677888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH-hcCCHHHHHHHHH
Q 011905 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC-RKNHSVEAAKLAR 437 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~ 437 (475)
.|++.+-+--.. ++.+..+...|...|....-++++..+|++..-. .| +..-|..++..|. +.|++..|+++++
T Consensus 610 qafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp--~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 610 QAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QP--NQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--Cc--cHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 888776544322 3456677777877788888888899888877653 34 7788988887665 5799999999998
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011905 438 FMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 438 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
..-.+ +|-+...+..+++.+...|-.+
T Consensus 685 ~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 685 DIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHh-CccchHHHHHHHHHhccccchh
Confidence 87654 5888889999999888887543
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=3.7e-11 Score=105.63 Aligned_cols=279 Identities=13% Similarity=0.071 Sum_probs=117.1
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 011905 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
|++..|+++..+-.+.+ +-....|..-..+.-..||.+.+-.++.+..+..-.++...+-+........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44444444444433332 11122233333333444444444444444444322333333444444444444444444444
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 011905 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-------VTISTLIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~ 330 (475)
+++.+.+ +.+.........+|.+.|++.....++..|.+.|.--+. .+|..+++-....+..+.-...|+
T Consensus 177 ~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 177 DQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4444432 233344444444444444444444444444444433222 233444443333333333333333
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410 (475)
Q Consensus 331 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 410 (475)
....+ ...++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...++ .+.+.++...-.+..++-.+.. +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h---~ 325 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH---P 325 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC---C
Confidence 33221 111223334444445555555555555555554443332 11111 2234444444444444333322 1
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 411 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
.+...+.+|...|.+.+.|.+|.+.|+..++.+ |+..++..+..++.+.|+.+.|.++
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHH
Confidence 123445555555555555555555555444332 5555555555555555555555443
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=2.2e-10 Score=100.78 Aligned_cols=286 Identities=12% Similarity=0.047 Sum_probs=165.2
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 011905 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 186 (475)
.|++.+|.+++..-.+.+-. ....|..-..+.-+.|+.+.+-..+.+..+..-.++...+-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46777777777666665522 33444445556666777777777777666542244555555666666677777777777
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 011905 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELLGE 259 (475)
Q Consensus 187 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (475)
++++.+.+ +-+........++|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 76666554 445566666677777777777777777777776654332 2445555555555555554455555
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011905 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 339 (475)
.... .+.++..-..++.-+.+.|+.++|.++.++..+.+..|+. .. .-.+.+-++.+.-.+..+...+....
T Consensus 255 ~pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 255 QPRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred ccHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence 4432 1233444445555566666666666666666665554441 11 11234445555555555554433221
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+...+.+|...|.+++.+.+|.+.|+...+. .|+..+|+.+..++.+.|+..+|.+..++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2345566666666666666666666655543 56666666666666666666666666665553
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.5e-10 Score=112.35 Aligned_cols=113 Identities=14% Similarity=0.066 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011905 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
+..++|+++|.+.++.. +-|...-|-+.-.++..|++..|..+|.+..+... ....+|-.+..+|...|+|..|++
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~---~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS---DFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh---hCCceeeeHHHHHHHHHHHHHHHH
Confidence 34677888888887653 33556666677778889999999999999998753 245678889999999999999999
Q ss_pred HHHHHHHcC-CCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 435 LARFMLKKR-IWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 435 ~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+|+...+.- ...+..+...|.+++.+.|.+.++.+.+
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999888754 3567778899999999999988887654
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.3e-09 Score=97.73 Aligned_cols=312 Identities=12% Similarity=0.069 Sum_probs=219.0
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC--CChhhHHHHHHHHHhcCC
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY--PDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~ 214 (475)
.++....+.+++.+-.+.....|++-+...-+....+.-...+++.|+.+|+++.+...- -|..+|..++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 355666677888888888888887666666666666677788899999999998876311 255667666543322111
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+..+.+-.-.--+--+.|+..+.+-|.-.++.++|...|++..+.+ +.....|+.+..-|....+...|++-+
T Consensus 315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1122111111002234577888888888889999999999988854 455678888888999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011905 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (475)
+...+-+ +.|-..|-.|-++|.-.+...=|+-.|++.....+. |...|.+|.++|.+.++.++|++.|......| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9888764 457788888999999999988899899888775433 77889999999999999999999999888765 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 011905 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 450 (475)
+...+..|...+-+.++.++|.+.+++.++. |...+.....---|..-+.+.+++++|..+......- .+...-
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~ee 542 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEE 542 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHH
Confidence 6678888888898999999998888877663 3221111222222455566788888888776665544 344444
Q ss_pred HHHHHHHHHh
Q 011905 451 VDKIVEHLKK 460 (475)
Q Consensus 451 ~~~l~~~~~~ 460 (475)
-..+++-+.+
T Consensus 543 ak~LlReir~ 552 (559)
T KOG1155|consen 543 AKALLREIRK 552 (559)
T ss_pred HHHHHHHHHH
Confidence 4455554444
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.1e-11 Score=115.62 Aligned_cols=285 Identities=13% Similarity=0.068 Sum_probs=217.3
Q ss_pred CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC--CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID--LYPDIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 144 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
+.++|...|+.+.+. +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+.++|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 357899999996553 34455777889999999999999999999987643 11356677776654422 122222
Q ss_pred H-HHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 222 F-KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 222 ~-~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+.....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld---p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD---PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC---CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 2 2333332 4468899999999999999999999999999853 237889999988899999999999999887653
Q ss_pred CCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011905 301 GCAPNRVTIS---TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377 (475)
Q Consensus 301 ~~~p~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 377 (475)
|+..|+ -+.-.|.+.++++.|+-.|+...+-++. +.+....+...+.+.|+.|+|+++++++.....+ |..
T Consensus 485 ----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 485 ----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 444454 4566789999999999999999886644 5566777778888999999999999999865422 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 446 (475)
.--.-...+...++.++|++.++++++. .| .+..+|..+...|-+.|+.+.|+.-|--|.+...+.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~--vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL--VP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh--Cc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 3333445567789999999999999985 33 478889999999999999999999999888776333
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.8e-10 Score=100.35 Aligned_cols=326 Identities=11% Similarity=0.029 Sum_probs=220.3
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH--
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV-- 203 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-- 203 (475)
..|..-+-.....+.+.|....|.+.|...... -+..|.+-+....-..+.+.+..+.. +.+.|...+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHH
Confidence 344433333334566777778888877766542 12233333332222223332222221 1122211111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011905 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 204 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
.+..++-.....+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+...=--.|..+|..++- .+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 2345566666788888888888888877666666666777778889999999999998853111135666766553 33
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (475)
..+-. +..+.+-...--+--+.|..++.+.|+-.++.++|...|+..++.+.. ...+|+.+..-|....+...|++-
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 22211 222221111111233467788888888888999999999998887655 356688888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
|+..++-+ +-|...|-.|-++|.-.+...-|+-+|++..... | .|...|.+|..+|.+.++.++|++.|......|
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--P-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--P-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--C-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99988654 4477888889999999999999999999888853 3 588899999999999999999999999998887
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 444 IWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
..+...+..+.+.+.+.++.++|...
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 56778888899999999888887654
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.1e-11 Score=115.50 Aligned_cols=275 Identities=14% Similarity=0.077 Sum_probs=213.0
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCChHHHHHH
Q 011905 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG--CAANLVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
+..+|...|..+... +.-+..+...+.++|...+++++|+++|+.+.+.. ..-+..+|.+.+--+-+.= ++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 567899999885443 33444666778899999999999999999998753 1236677887775544321 2222
Q ss_pred H-HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 257 L-GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 257 ~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
+ +.+.... +-...+|-++..+|.-.++++.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~---~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 409 LAQDLIDTD---PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHhhC---CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2 2333322 456789999999999999999999999999885 44 678888888888888999999999999876
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 011905 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413 (475)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 413 (475)
.+.. +-.+|..+.-.|.+.++++.|+-.|++..+- .| +.+....+...+-+.|+.|+|+++++++...+.+ |.
T Consensus 484 ~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n~ 557 (638)
T KOG1126|consen 484 VDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK---NP 557 (638)
T ss_pred CCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---Cc
Confidence 5433 3345666778899999999999999999865 45 4566677778889999999999999999987643 44
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
..--..+..+...+++++|+..++++...- |.+..++..+++.|.+.|+.+.|..-
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHh
Confidence 444455667778999999999999998775 77788899999999999999988653
No 45
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=1.2e-11 Score=118.57 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=49.2
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHh
Q 011905 86 LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165 (475)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~ 165 (475)
...|..|+..+|..++..++..|+.+.|- +|..|.-+..+.....|+.++....+.++.+.+. .|...
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 34455556666666666666666666555 5666655555556666666666655555554443 35555
Q ss_pred hHHHHHHHHHhcCChhH
Q 011905 166 IYNNVIRLFCEKGDMIA 182 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~ 182 (475)
+|..|..+|...||+..
T Consensus 85 tyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHHHHhccchHH
Confidence 66666666666665443
No 46
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.47 E-value=4e-09 Score=102.77 Aligned_cols=315 Identities=12% Similarity=0.007 Sum_probs=196.7
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC--CChhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY--PDIITYVSMIKGFCNAGRLEDACGLF 222 (475)
Q Consensus 145 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~ 222 (475)
+..+++++...-..+ .-|+...+.|...|.-.|+++.+..+...+...... .-...|-.+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344555555443322 245666777777777788888888877776553211 12334667778888888888888888
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 011905 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG----MMKEALGILDRME 298 (475)
Q Consensus 223 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~ 298 (475)
.+..+..-.--+..+.-+...|.+.|+++.+...|+.+.... +.+..+..++...|...+ ..++|..++....
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~---p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL---PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC---cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 776665322113334556777888888888888888887753 445666666766666664 4456666666555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 011905 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV----AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS---G 371 (475)
Q Consensus 299 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~ 371 (475)
+.- +.|...|-.+...+-.. +...++..|.... ..+..+.....|.+...+...|.+.+|...|...... .
T Consensus 408 ~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 442 34566666666655443 4334465555433 3444456777888888888888888888888887643 1
Q ss_pred CCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011905 372 VKPDGL------ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445 (475)
Q Consensus 372 ~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 445 (475)
..+|.. +--.+...+-..++.+.|.+.|..+.+.. +.-+..|-.++...-..+...+|..++++.+... .
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~ 561 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-S 561 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-c
Confidence 223331 11223344455678888888888888764 1233444444422334577888888888888766 6
Q ss_pred CChhhHHHHHHHHHhcCCHhHHhh
Q 011905 446 LQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
.++..+..++..+.+...+..|.+
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhccccc
Confidence 777777777767766665554443
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.46 E-value=1.1e-08 Score=95.71 Aligned_cols=374 Identities=13% Similarity=-0.014 Sum_probs=202.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCcc--CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH
Q 011905 87 QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV--SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 164 (475)
..|+.-+...+-.=...+...|..-....++......|+.- -..||..-.+.|.+.+.++-|..+|....+. ++-+.
T Consensus 472 ~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~ 550 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKK 550 (913)
T ss_pred hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchh
Confidence 34555555555555555555566666666666555555432 1235555555666666666666666655543 12344
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..|......--..|..+....+|++.... ++-....|-....-+...||...|..++....+.... +...|-..+..-
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle 628 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLE 628 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHh
Confidence 45555544444455555556666555442 2333344444445555556666666666655554322 455555555555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 011905 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~ 323 (475)
.....++.|..+|.+.... .|+...|.--+...--.+..++|.+++++..+. -|+ ...|..+-+.+-+.++++
T Consensus 629 ~en~e~eraR~llakar~~----sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI----SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred hccccHHHHHHHHHHHhcc----CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHH
Confidence 6666666666666655542 245555554444444555566666666555543 222 233444445555555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (475)
.|...|..-.+.- +.....|-.|...=.+.|.+-.|..++++..-.+ +-+...|-..|+.=.+.|+.+.|..+..+..
T Consensus 703 ~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 703 MAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555554433321 1122334444444445555555555555555443 2234455555555555555555554444433
Q ss_pred HcCC------------CC---------------CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 404 KIGF------------LS---------------SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 404 ~~~~------------~~---------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
+... .| ..|..+.-.+...+-...++++|.+.|.+..+.+ +..-.+|.-+..
T Consensus 781 Qecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fyk 859 (913)
T KOG0495|consen 781 QECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYK 859 (913)
T ss_pred HhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHH
Confidence 3210 00 1155566666677777788888888888888777 666677888888
Q ss_pred HHHhcCCHhHHhhccc
Q 011905 457 HLKKSGDEELITNLPK 472 (475)
Q Consensus 457 ~~~~~g~~~~a~~l~~ 472 (475)
.+.+.|..+.-.++++
T Consensus 860 fel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 860 FELRHGTEEDQKEVLK 875 (913)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 8888886666555543
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.45 E-value=2.2e-08 Score=93.64 Aligned_cols=341 Identities=9% Similarity=0.051 Sum_probs=240.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCC--
Q 011905 89 SYRHSSFMYNRACEMSRIKQNPSIIIDVVEA----YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-- 162 (475)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-- 162 (475)
..+.+.+.+-...+.-.+.|+.+.+..+++. +...|+..+...|-.=...|-..|..-.+..+.......|+.-
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 3445566666666666667777777666554 4556777777777777777777777777777777776665532
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
-..+|+.-.+.|.+.+.++-|..+|....+.. +.+...|......--..|..++...+|++.... ++-....|-....
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ak 592 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAK 592 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHH
Confidence 23467777777888888888888887776543 445666766666666677788888888887765 2334555666666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 322 (475)
-+-..|+...|..++..+.+.. +.+...|-..+.......+++.|..+|.+.... .|+...|..-+..-.-.++.
T Consensus 593 e~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhH
Confidence 7777888888888888887743 346677777788888888888888888877664 56777777777776777888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYED 401 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~ 401 (475)
++|.+++++.++.-.. -...|..+.+.+-+.++++.|.+.|..-.+. -|+. ..|-.|...=-+.|.+-.|+.+++.
T Consensus 668 eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 8888888888775422 2355777777788888888888887765543 3443 3444454444566788888888888
Q ss_pred HHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 402 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
..-++ +.+...|-..|+.-.+.|..+.|..+..+++..
T Consensus 745 arlkN---Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 745 ARLKN---PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHhcC---CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 87765 347788888888888888888888777666654
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=1.6e-11 Score=104.77 Aligned_cols=232 Identities=13% Similarity=0.023 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
.+=-+.+.++|.+.|.+.+|++.++.-..+ .|-+.||..+-.+|.+..++..|+.++.+-.+. .+.|+.......
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~A 297 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhH
Confidence 333356677777777777777777766653 356667777777777777777777777766654 222333334455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
+.+-..++.++|.++++...+.... +++...++...|.-.++++-|+.+|++++..|+. +...|+.+--+|...+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 6666677777777777777665432 4555666666677777777777777777777754 5556666666666777777
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011905 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.++.-|++....--.|..-..+|..+.......|++..|.+.|+-.+..+ +.....++.+.-.-.+.|+.+.|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 77777777666544444455667777666667777777777777777666 55566677777777777777777766653
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=3.6e-08 Score=88.85 Aligned_cols=386 Identities=11% Similarity=0.040 Sum_probs=222.4
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
+.+.++|..+|..+.... ..+..++-..++.-.+.+....|..+++.....-...|. .|-..+..=-..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 455666777776664332 223444555555555666666666666665543222222 22223333334566666666
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 011905 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-G 229 (475)
Q Consensus 151 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g 229 (475)
+|++-.+- .|+...|++.|..=.+-+.++.|..+++...-. .|+..+|--..+.=.+.|+...|..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 66665543 466666666666666666666666666666532 466666666666666666666666666655442 1
Q ss_pred C-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----------------------------------------CCC
Q 011905 230 C-AANLVAYSALLDGICRLGSMERALELLGEMEKEG-----------------------------------------GDC 267 (475)
Q Consensus 230 ~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----------------------------------------~~~ 267 (475)
- ..+...+.+....=.++..++.|.-+|.-....- ..-
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 0 0011112222211112222333333222222110 011
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCC
Q 011905 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-------VTISTLIKGF---CVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~---~~~~~~~~a~~~~~~~~~~~~ 337 (475)
+.|-.+|-..+..--..|+.+...++|++.... ++|-. ..|..+=-++ ....+.+.+.++++..++ +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--l 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--L 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--h
Confidence 345556666666666778888888888877765 44421 1121111111 234677778888877776 3
Q ss_pred CC-ChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 011905 338 VS-SGGCYSSL----VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412 (475)
Q Consensus 338 ~~-~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 412 (475)
.| ...||..+ ...-.++.++..|.+++...+ |..|...+|...|..=.+.++++.++.++++..+.+ +.+
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~---Pe~ 470 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS---PEN 470 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---hHh
Confidence 33 23333333 333346677788888887777 667888888888877778888888888888888865 246
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
..+|......-...|+.+.|..+|.-+++... ......+...+.--...|.++.|..+.
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 67777776666677888888888888877642 233345667777777778888777665
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=2e-11 Score=117.02 Aligned_cols=275 Identities=12% Similarity=0.122 Sum_probs=169.7
Q ss_pred HHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 011905 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194 (475)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 194 (475)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45556666777777777777777777777766666 7777666666666667777777666666655544
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH
Q 011905 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274 (475)
Q Consensus 195 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (475)
.|...||..|..+|...||... |+...+ -.-.+...+...|.-.....++..+.-. .+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~-p~~lpda~-- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCC-PHSLPDAE-- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccC-cccchhHH--
Confidence 4666777777777777777554 222222 1222334445555555555555444322 12234432
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011905 275 TSVIQIFCGKGMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
..+....-.|-++.+++++..+..... .|..+ +++-+.... ....++.+......-.|+..+|.+++.+-..
T Consensus 144 -n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 144 -NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALA 216 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Confidence 234444556667777777665543211 11111 233333322 2233333333222225778888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCC
Q 011905 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428 (475)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 428 (475)
.|+.+.|..++.+|.+.|+..+..-|-.|+-+ .++..-+..+++.|.+.|+.| +..|+...+..+..+|.
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p--~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP--GSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCC--CcchhHHHHHhhhcchh
Confidence 88888888888888888888887777777654 777888888888888888877 77888887777777554
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=3.9e-10 Score=98.74 Aligned_cols=199 Identities=14% Similarity=0.108 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444444444555555555554444322 2233444444444555555555555555444432 12334444444555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 324 (475)
...|++++|.+.+++..... ..+.....+..+...+...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554421 011122334444445555555555555555554432 1123344455555555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
|...+++..+.. ..+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555554441 2233344444455555555555555555443
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=1.1e-09 Score=107.97 Aligned_cols=251 Identities=13% Similarity=-0.001 Sum_probs=141.4
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011905 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFC---------NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
+.++|.+.|++..+.. +-+...|..+..++. ..+++++|...+++..+... -+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 3456777777766543 223334444433332 22346777777777776642 256666666677777777
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 329 (475)
+++|...|++..+.+ +.+...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 777777777777643 334556666777777777777777777777665322 1222233344455567777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011905 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA-CSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (475)
++..+...+-+...+..+..++...|+.++|...+.++... .|+... .+.+...|...| ++|...++.+.+..-.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 77665432223444566666677777777777777776543 344333 333334445555 3666666665543211
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 409 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
-+.+ ..+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 506 ~~~~-~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNN-PGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcC-chH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 1111 111 33334445666666555 6666554
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=6e-10 Score=97.55 Aligned_cols=200 Identities=15% Similarity=0.114 Sum_probs=120.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHH
Confidence 4455556666666777777777776666543 2245566666666667777777777776666532 23445556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011905 279 QIFCGKGMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (475)
..+...|++++|.+.+++...... ......+..+..++...|++++|...+++..+.... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 666667777777777766655321 112334555566666667777777777666654322 344566666666667777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++|...+++..+. ...+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777666654 123444455555566666677777666665544
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=1.1e-09 Score=108.14 Aligned_cols=268 Identities=13% Similarity=0.054 Sum_probs=190.3
Q ss_pred ccCHHhHHHHHHHHHh-----cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHH---------hcCChhHHHHHHHHhc
Q 011905 126 VVSVKMMKVIFNLCEK-----ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC---------EKGDMIAADELMKGMG 191 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~---------~~g~~~~a~~~~~~m~ 191 (475)
+.+...|...+.+-.. .+.+++|.+.|++..+.. +-+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3456666666664321 234679999999998764 224556666655544 2345789999999998
Q ss_pred cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc-
Q 011905 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN- 270 (475)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 270 (475)
+.+ +-+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. |+
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~----P~~ 405 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD----PTR 405 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCC
Confidence 765 5567788888888999999999999999999875 3357788889999999999999999999999853 33
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011905 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 350 (475)
...+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...+.++...... +....+.+...
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~ 484 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAE 484 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHH
Confidence 33334445557778999999999999876542224555777888888999999999999987665322 34445666667
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 351 LVRTKRLKEAEKLFSKMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
|...| ++|...++.+.+. ...+....+..+ .+.-.|+-+.+... +++.+.+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 77777 4788777777652 223333333333 34556777766655 7777754
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=3e-12 Score=81.22 Aligned_cols=50 Identities=38% Similarity=0.759 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011905 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 318 (475)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=2.1e-09 Score=96.07 Aligned_cols=279 Identities=17% Similarity=0.113 Sum_probs=203.7
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHH--hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC--EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
-+.+.|+++.|+++++-+.+..-+.-...-|.|-..+. .-+++..|..+-+.....+ +-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 46778999999999888776543332233333332222 2346777777777665432 22233222223344567999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011905 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
++|.+.|++.......-....|| +.-.+-..|++++|+++|-++-.- +..++.+...+.+.|-...+...|++++.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i---l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI---LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999998763221222232 334577889999999999887542 23567778888899999999999999997
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011905 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 375 (475)
+.... ++.|+...+.|...|-+.|+-..|++.+-+--+ .++.+..+..-|...|....-+++++..|++.. -++|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCcc
Confidence 77654 566788999999999999999999887654332 344577888889999999999999999999876 45899
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCC
Q 011905 376 GLACSVMIREL-CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428 (475)
Q Consensus 376 ~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 428 (475)
..-|..++..| .+.|++++|..+++...++- +.|..+...|++.+...|-
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf---pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF---PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---ccchHHHHHHHHHhccccc
Confidence 99999988765 56899999999999999864 3588899999998887774
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=3.8e-12 Score=80.77 Aligned_cols=49 Identities=43% Similarity=0.983 Sum_probs=27.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011905 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2e-08 Score=90.86 Aligned_cols=219 Identities=13% Similarity=0.044 Sum_probs=141.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 011905 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 291 (475)
.|+.-.|..-|+..++....+ ...|--+..+|....+.++..+.|++....+ +-+..+|..-...+.-.+++++|.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld---p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD---PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC---CCCCchhHhHHHHHHHHHHHHHHH
Confidence 345555555555555543222 2225556666777777777777777777643 345556666666666677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 371 (475)
.=|++..... +-+...|..+.-+..+.+++++++..|++.+++-+ ..+..|+.....+...++++.|.+.|+..++.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 7777776642 22445566666666677788888888888877543 24667888888888888888888888877753
Q ss_pred CCCC-------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 372 VKPD-------G--LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 372 ~~p~-------~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.|+ . ..-..++.. .-.+++..|.+++++..+.+. .....|..|...-.+.|+.++|+++|++....
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dp---kce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDP---KCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred -ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCc---hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 222 1 111122221 123788888888888887652 24567788888888888888888888876644
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=4.1e-10 Score=96.33 Aligned_cols=231 Identities=14% Similarity=0.077 Sum_probs=172.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||-.|-+.|.+..+...|+.++.+-.+. .+-|+....-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHH
Confidence 45777888888888888888877766 466777888888888888888888888877763 2334333345666777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 362 (475)
..++.++|.++++...+.. +.++.....+...|...++.+.|+..++.+.+-|+. +...|+.+.-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 7788888888888877653 335556666667777888888888888888888875 56778888888888888888888
Q ss_pred HHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 363 LFSKMLASGVKPDG--LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 363 ~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
-|.+....--.|+. ..|-.|-......||+..|.+.|+-....+ +.+...++.|...-.+.|++++|..+++...
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d---~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD---AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC---cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 88887764434443 445556666677888888888888888765 2367788888888888899999988888877
Q ss_pred HcC
Q 011905 441 KKR 443 (475)
Q Consensus 441 ~~~ 443 (475)
+..
T Consensus 457 s~~ 459 (478)
T KOG1129|consen 457 SVM 459 (478)
T ss_pred hhC
Confidence 654
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=4e-09 Score=99.52 Aligned_cols=244 Identities=20% Similarity=0.175 Sum_probs=177.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CcCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhc-----C
Q 011905 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-----GC-AANLVA-YSALLDGICRLGSMERALELLGEMEKE-----G 264 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~ 264 (475)
.-..+...+...|...|++++|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 33456667889999999999999999887654 21 223332 344777888999999999999988652 2
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c--CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 011905 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA---L--GC-APNR-VTISTLIKGFCVEGNLDEAYQLIDKVVAG-- 335 (475)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~--~~-~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 335 (475)
...+.-..+++.|..+|++.|++++|...+++..+ . |. .|.. ..++.+...++..+++++|..++....+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 22223345677788899999999988888776542 1 11 1222 23566777888999999999998876542
Q ss_pred -CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 336 -GSVS----SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-----G-VKP-DGLACSVMIRELCLGGQVLEGFCLYEDIE 403 (475)
Q Consensus 336 -~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (475)
-+.+ -..+++.|...|...|++++|.+++++.+.. | ..+ ....++.|...|.+.++.++|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 1111 2467999999999999999999999988742 1 122 24567888888999999999999988765
Q ss_pred H----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 404 K----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 404 ~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
. .|...+.-..+|..|...|-+.|++++|.++.+...
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4 343333346788999999999999999999988776
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=2.5e-08 Score=95.36 Aligned_cols=284 Identities=17% Similarity=0.117 Sum_probs=162.0
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHh----
Q 011905 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA-YSALLDGICR---- 246 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~ll~~~~~---- 246 (475)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |+... |..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3445566666666666554321 22223334445566666666666666666666653 33333 3333333311
Q ss_pred -cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 247 -LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM-KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 247 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 324 (475)
..+.+...++++++...- |.......+.-.+.....+ ..+..++..+...|+++ +|+.|-..|....+.+-
T Consensus 89 ~~~~~~~~~~~y~~l~~~y----p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY----PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccHHHHHHHHHHHHHhC----ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 124556666666665531 3332222222222221122 23444455566666543 45555555555555555
Q ss_pred HHHHHHHHHhC----C----------CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 011905 325 AYQLIDKVVAG----G----------SVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELC 387 (475)
Q Consensus 325 a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 387 (475)
..+++...... + -.|+. .++.-+...|...|++++|++++++.++. .|+ +..|..-.+.+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 55555554322 1 12222 24456677777888888888888888765 555 456666677778
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--------HHHHHHHH
Q 011905 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV--------DKIVEHLK 459 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------~~l~~~~~ 459 (475)
+.|++++|.+.++..+..+. .|...-+..+..+.++|+.++|.+++....+.+..|-.... ....++|.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~---~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL---ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh---hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887763 25555666667777888888888888777766643333221 35567788
Q ss_pred hcCCHhHHhhc
Q 011905 460 KSGDEELITNL 470 (475)
Q Consensus 460 ~~g~~~~a~~l 470 (475)
+.|++..|.+-
T Consensus 317 r~~~~~~ALk~ 327 (517)
T PF12569_consen 317 RQGDYGLALKR 327 (517)
T ss_pred HHhhHHHHHHH
Confidence 88887777643
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.26 E-value=2e-07 Score=87.34 Aligned_cols=88 Identities=8% Similarity=-0.123 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
-.++..+-..|+++.|..+++...++- |+ -++.|..-.+.+...|.+++|..++++..+.+ .+|...-........
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHT--PT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHT--PT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccC--ch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 345566667777777777777777652 21 34555555666777777777777777777666 455555556666677
Q ss_pred hcCCHhHHhhcc
Q 011905 460 KSGDEELITNLP 471 (475)
Q Consensus 460 ~~g~~~~a~~l~ 471 (475)
++.+.++|.+++
T Consensus 451 rAn~i~eA~~~~ 462 (700)
T KOG1156|consen 451 RANEIEEAEEVL 462 (700)
T ss_pred HccccHHHHHHH
Confidence 777777776655
No 64
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=3.4e-07 Score=82.71 Aligned_cols=362 Identities=10% Similarity=0.023 Sum_probs=246.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhc
Q 011905 99 RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEK 177 (475)
Q Consensus 99 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~ 177 (475)
.....-...++...|..+++...... .-+...|-.-+.+=.++..+..|..+|+..+.. -|-+ ..|--.+.+=-..
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHh
Confidence 33334455677888999999988765 556777877888888999999999999998764 2333 3455555555667
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 011905 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
|++..|.++|+...+. .|+...|++.|+.=.+.+.++.|..+|++.+-. .|++.+|-.....=.++|....|..+|
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999998754 799999999999999999999999999998865 589999999999889999999999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------C----------------
Q 011905 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--------------------G---------------- 301 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------~---------------- 301 (475)
+...+.-.+-..+...+.+....-.+...++.|.-+|+-..+. |
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 9887631100111222333222222333444444444333222 0
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHH--------HHHHhcCCHHHHHHHHH
Q 011905 302 -------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLV--------VELVRTKRLKEAEKLFS 365 (475)
Q Consensus 302 -------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li--------~~~~~~g~~~~A~~~~~ 365 (475)
-+-|-.+|--.++.-...|+.+...++|+..+..-.+... ..|...| -.=....+.+.+.++|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1224444555555556667777777777777664322111 1111111 11124567777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 366 KMLASGVKPDGLACSVMIREL----CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
..++. ++....||..+--.| .++.++..|++++...... .| ...+|...|..-.+.++++....++++.+.
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cP--K~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CP--KDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CC--chhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77762 333345555443333 3556777888877776654 33 557788888887888888888888888888
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011905 442 KRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
-+ |-+-.+|......-...|+.+.|..+..+
T Consensus 466 ~~-Pe~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 466 FS-PENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 87 67777888888888888888888776654
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=5.6e-08 Score=93.00 Aligned_cols=258 Identities=16% Similarity=0.093 Sum_probs=113.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc----
Q 011905 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK---- 177 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---- 177 (475)
.++...|+++.|++.++.-... +......+......+.+.|+.++|..+|..+.+.+ +.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3445566666666666553222 22223334444556666666666666666666654 12333333333333111
Q ss_pred -CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 011905 178 -GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE-DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 178 -g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
.+.+...++++++...- |.......+.-.+.....+. .+...+..+...|+++ +|+.+-..|......+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 13455566666554432 33333322222222212222 3334455555555442 34444444444444444444
Q ss_pred HHHHHHhcC----C--------CCCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 011905 256 LLGEMEKEG----G--------DCSPNVVTY--TSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEG 320 (475)
Q Consensus 256 ~~~~~~~~~----~--------~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~ 320 (475)
++......- . .-+|+...| .-+...|...|++++|++++++..+. .|+ +..|..-.+.+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 444433210 0 011222222 22333444445555555555444443 222 334444444444445
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
++.+|.+.++.....+.. |...-+..+..+.+.|++++|.+++....+
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 555555554444444332 333333344444444555555444444443
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=1.5e-08 Score=95.67 Aligned_cols=242 Identities=17% Similarity=0.101 Sum_probs=176.7
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCC-CCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKE---GGD-CSPNVVT-YTSVIQIFCGKGMMKEALGILDRMEAL----- 300 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~----- 300 (475)
+.-..+...+...|...|+++.|+.++....+. ..| ..|.+.+ .+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 334456677999999999999999999987763 111 1234333 344777889999999999999998642
Q ss_pred C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 011905 301 G-CAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG-----GSV-SS-GGCYSSLVVELVRTKRLKEAEKLFSKMLAS- 370 (475)
Q Consensus 301 ~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 370 (475)
| ..| -..+++.|..+|.+.|++++|...++...+- +.. |. ...++.+...++..+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 111 2356777888899999999999888876531 111 11 234677788899999999999999877642
Q ss_pred --CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 371 --GVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIG----FL-SSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 371 --~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
-..++ ..+++.|-..|...|++++|+++++++.... .. ..-....++.+...|.+.+++.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 12222 3578899999999999999999999987641 11 1112456788889999999999999998876
Q ss_pred HHc----CC--CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 440 LKK----RI--WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 440 ~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
... |. +....+|..|...|...|++|.|.++..
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 643 32 2333578899999999999999998753
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.1e-08 Score=89.35 Aligned_cols=284 Identities=13% Similarity=0.089 Sum_probs=194.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHH
Q 011905 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170 (475)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 170 (475)
.++......-.+.+-...++++..++.+...+.. ++....+..=|..+...|+..+-..+=.++++.- |..+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3455555555666677778888888888777654 6666666666777777777776666666666542 4466778888
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcC
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g 248 (475)
..-|.-.|+..+|.+.|.+....+ +.=...|-.+...|+-.|..|.|...+....+. |.- -+..| +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 777777788888888887765332 222456777778888888888888777766552 221 11122 334567778
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCCH
Q 011905 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----G--CAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~--~~p~~~~~~~li~~~~~~~~~ 322 (475)
.++.|.++|.+.... .|.|+...+-+.......+.+.+|..+|+..... + ...-..+++.|-.+|.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai---~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI---APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred cHHHHHHHHHHHHhc---CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 888888888887763 2566777777777777778888888888766521 0 111334567777788888888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011905 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
++|+..++..+..... +..++.++.-.|...|+++.|.+.|.+.+ .+.|+..+...++..+
T Consensus 472 ~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 8888888887765543 66778888888888888888888888777 4577776666666543
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.19 E-value=1.8e-06 Score=81.02 Aligned_cols=167 Identities=11% Similarity=0.072 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------C-
Q 011905 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPN-VVTYTSVIQIFCGKGMMKEALGILDRMEALGCA----------P- 304 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------p- 304 (475)
|..+.+.|-..|+++.|..+|++..+-..+...+ ..+|......-.+..+++.|+++++......-. |
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 4556666777777777777777776632110001 234444445555666777777766655422111 0
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 011905 305 ------NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-L 377 (475)
Q Consensus 305 ------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~ 377 (475)
+...|...++.--..|-++....+++.+++..+..... .-.....+..+.-++++.++|++-+..=..|+. .
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi-i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI-IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 12223344444444556666666666666554432111 111111223334445555555543322112332 2
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 011905 378 ACSVMIRELCL---GGQVLEGFCLYEDIEK 404 (475)
Q Consensus 378 ~~~~li~~~~~---~g~~~~a~~~~~~~~~ 404 (475)
.|+..+.-+.+ ...++.|+.+|++..+
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 33333332221 2255666666666666
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.2e-06 Score=78.00 Aligned_cols=319 Identities=13% Similarity=0.043 Sum_probs=222.8
Q ss_pred cCCccCHHhHHHHHHHHHhc--CCHHHHHHHHHhccc-CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh
Q 011905 123 EGCVVSVKMMKVIFNLCEKA--RLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199 (475)
Q Consensus 123 ~~~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 199 (475)
...+|...+...-+.++++. ++-..|.+.+-.+.. .-++-|+.....+...+...|+.++|...|++....+ |+.
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~ 265 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDN 265 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhh
Confidence 34455555555555555443 333344444333322 2345678888999999999999999999999987543 432
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011905 200 -ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 200 -~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
.......-.+.+.|+.+....+...+.... +-+...|-.-.......++++.|+.+.++.++.+ +.+...|-.-.
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilKG 341 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILKG 341 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhcc
Confidence 233334445567888888888877776542 1234445555556667789999999999998853 35566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHH-hcCC
Q 011905 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV-VELV-RTKR 356 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~ 356 (475)
..+...|++++|.--|+...... +-+...|..|+.+|...|++.+|.-+-+...+.- ..+..+...+. ..+. ...-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchh
Confidence 78889999999999999887642 3467899999999999999999988777665431 12333333331 1121 2223
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011905 357 LKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
-++|.++++...+. +|+. ...+.+...|...|..+++..+++...... +|....+.|.+.+...+.+.+|++.
T Consensus 420 rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 420 REKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred HHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----cccHHHHHHHHHHHHhhhHHHHHHH
Confidence 47899999887744 6764 455666677888999999999999988753 3888999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHH
Q 011905 436 ARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 436 ~~~m~~~~~~~~~~~~~~l~~ 456 (475)
|..++..+ |.+..+..-+-.
T Consensus 494 y~~ALr~d-P~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 494 YYKALRQD-PKSKRTLRGLRL 513 (564)
T ss_pred HHHHHhcC-ccchHHHHHHHH
Confidence 99999887 666666655433
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.9e-07 Score=84.62 Aligned_cols=359 Identities=13% Similarity=0.008 Sum_probs=241.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC-HhhHHHHHHHHHhcCC
Q 011905 102 EMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-TIIYNNVIRLFCEKGD 179 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~ 179 (475)
..+-+.++++.|++.+...... .|+ +..|.....+|...|+|+++.+--.+..+. .|+ +..+..-.+++-..|+
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhcc
Confidence 4566788999999999998875 567 677777888999999999999888888775 354 3466667778888899
Q ss_pred hhHHHHHH------HHh-------------------------ccCC--CCCChhhHHHHHHHHHhc-----------CC-
Q 011905 180 MIAADELM------KGM-------------------------GLID--LYPDIITYVSMIKGFCNA-----------GR- 214 (475)
Q Consensus 180 ~~~a~~~~------~~m-------------------------~~~~--~~~~~~~~~~li~~~~~~-----------~~- 214 (475)
+++|+.=+ +.. .+.+ +-|+....++....+... ++
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 98876532 111 1001 223333333333332210 00
Q ss_pred -HHHHHHHHHHHHHCCC----------------Cc-----CH------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 011905 215 -LEDACGLFKVMKRHGC----------------AA-----NL------VAYSALLDGICRLGSMERALELLGEMEKEGGD 266 (475)
Q Consensus 215 -~~~a~~~~~~m~~~g~----------------~~-----~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (475)
..++.+.+..-...|. .+ |. .+...-...+.-.|+.-.|..-|+..+...
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-- 356 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-- 356 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--
Confidence 1122221111111110 01 11 111111122334688889999999988742
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011905 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346 (475)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (475)
+.+...|--+...|....+.++..+.|......+ +-++.+|..-.+.+.-.+++++|..=|++.+..+.. +...|--
T Consensus 357 -~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQ 433 (606)
T KOG0547|consen 357 -PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQ 433 (606)
T ss_pred -cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHH
Confidence 2222336667778999999999999999998765 336677877778888888999999999999886543 3445655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCCchhhHHHHHH
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL-----SSVDSDIHSVLLL 421 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~li~ 421 (475)
+.-+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+...+.-.. ..+...+.-.++.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 666666889999999999999875 3334678888899999999999999999998875311 0011112222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.- -.+++..|..++++.++.. |-....+..+.......|+.++|.++..
T Consensus 513 ~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 513 LQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred hc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 22 3489999999999999887 5566778899999999999999987753
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.7e-06 Score=80.48 Aligned_cols=382 Identities=9% Similarity=-0.017 Sum_probs=207.7
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHH--HH--HHHhcCCH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI--FN--LCEKARLA 145 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~--~~~~~~~~ 145 (475)
..++.+.|++...-... .++.+...+..-+-.+...++++.|+.+++.-. -..+++.. =. +..+.+..
T Consensus 24 ~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred cchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHHHHcccH
Confidence 56777778777665543 334566666666667777788888886665421 11222222 22 33467888
Q ss_pred HHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCC---------------------------C
Q 011905 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP---------------------------D 198 (475)
Q Consensus 146 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---------------------------~ 198 (475)
++|+..++-... .|..+...-...+.+.|++++|+++|+.+.+++.+- .
T Consensus 96 Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 999998883332 344466666778889999999999999996654211 0
Q ss_pred hhhHHHHHH---HHHhcCCHHHHHHHHHHHHHCC--------CC-cCHHHHHHHH-----HHHHhcCChHHHHHHHHHHH
Q 011905 199 IITYVSMIK---GFCNAGRLEDACGLFKVMKRHG--------CA-ANLVAYSALL-----DGICRLGSMERALELLGEME 261 (475)
Q Consensus 199 ~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g--------~~-~~~~~~~~ll-----~~~~~~g~~~~a~~~~~~~~ 261 (475)
..+|..+.+ .++..|++.+|+++++...+.+ .. -+...=-..| ..+-..|+-++|.+++..+.
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 113333332 2334566666666666652211 00 0111111111 23345566666666666666
Q ss_pred hcCCCCCCcHHHH----HHHHHHHHhcCCHH-HHHHHHHHHH------------H-------------------------
Q 011905 262 KEGGDCSPNVVTY----TSVIQIFCGKGMMK-EALGILDRME------------A------------------------- 299 (475)
Q Consensus 262 ~~~~~~~~~~~~~----~~li~~~~~~g~~~-~a~~~~~~m~------------~------------------------- 299 (475)
+.. ++|.... |.++..-....-.+ .++..++... .
T Consensus 252 ~~~---~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 252 KRN---PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred Hhc---CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 643 2333221 11211110000000 0000000000 0
Q ss_pred --cCCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------
Q 011905 300 --LGCAPN--RVTISTLIKGFCV--EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS-------- 365 (475)
Q Consensus 300 --~~~~p~--~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-------- 365 (475)
...++. ...+.+++..+.+ ......+.+++...-+....-...+.-.++......|+++.|.+++.
T Consensus 329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 001111 1122233322221 12344555555555444333234455566777788899999999988
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI----HSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.+.+.+..| .+...+...+.+.++-+.|..++.+....-......... +..++..-.+.|+-++|..+++++.+
T Consensus 409 s~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 409 SILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 555444444 445556666777777777888877776531111112222 33334444578999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 442 KRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
.. ++|..+...++.+|++.. .+.|+.+
T Consensus 487 ~n-~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 487 FN-PNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred hC-CchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 87 899999999999988764 5555444
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.2e-07 Score=87.44 Aligned_cols=283 Identities=13% Similarity=0.032 Sum_probs=216.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+......-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=..+.+.- +-...+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34444445556777889999999999988765 6777777777888889999888777777887763 446788999998
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~ 320 (475)
-|.-.|+.++|.+.|.+....+. .=...|-.+...|+-.|..+.|+..+...-+. |.. -+..| +---|.+.+
T Consensus 321 YYl~i~k~seARry~SKat~lD~---~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP---TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc---cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 89999999999999999877432 23457888899999999999999988776543 211 11222 233577889
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCCHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GV---K-PDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~---~-p~~~~~~~li~~~~~~g~~~~ 394 (475)
+++.|.+.|.+.....+ .|+...+-+.......+.+.+|...|+..+.. .+ . --..+++.|-.+|.+.+..++
T Consensus 395 n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 99999999998876432 25667777777777889999999999887631 11 1 134568888899999999999
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
|+..+++..... +.+..+|..+...|...|+++.|.+.|.+.+-.. |+..+...++..+.
T Consensus 474 AI~~~q~aL~l~---~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~--p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 474 AIDYYQKALLLS---PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK--PDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHcC---CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CccHHHHHHHHHHH
Confidence 999999999875 3488999999999999999999999999998664 66555555444443
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.13 E-value=4.9e-07 Score=84.78 Aligned_cols=204 Identities=12% Similarity=0.017 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-APNR--VTISTL 312 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~l 312 (475)
....+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+++...... .|+. ..|..+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 33344555666666666666666666632 33445555566666666666666666666554321 1221 234455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHhcCCHHHHHHH--H-HHHHHCCC-CCCHHHHHHHHH
Q 011905 313 IKGFCVEGNLDEAYQLIDKVVAGGS-VSSGGCY-S--SLVVELVRTKRLKEAEKL--F-SKMLASGV-KPDGLACSVMIR 384 (475)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~A~~~--~-~~m~~~~~-~p~~~~~~~li~ 384 (475)
...+...|++++|..++++...... .+..... + .++.-+...|..+.+.+. + ........ ............
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 6666667777777777766643322 1111111 1 122222233322222221 1 11111100 111112224555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 385 ELCLGGQVLEGFCLYEDIEKIGFL------SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
++...|+.+.|..+++.+...... ........-....++...|++++|.+.+...+..
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667788888888888887663221 0001222222333445789999999998887765
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=2.6e-07 Score=83.57 Aligned_cols=198 Identities=11% Similarity=-0.056 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
..|..+...|.+.|++++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.. +-+..++..+..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~ 140 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345555556666666666666666666532 3345666666666666666666666666666542 113445555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
++...|++++|.+.++...+.+... . ........+...++.++|...+.+..... .|+...+ .+ .....|+...
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~-~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPND-P-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCH
Confidence 6666667777777666666544321 1 11111112234556777777775544321 2222111 11 1223444433
Q ss_pred HHHHHHHHHHcCCC-C---CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 395 GFCLYEDIEKIGFL-S---SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 395 a~~~~~~~~~~~~~-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+ +.++.+.+..-. + +.....|..+...+.+.|++++|...|++.+..+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 233333321100 0 0133567777777888888888888888887776
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=1.2e-07 Score=85.71 Aligned_cols=217 Identities=17% Similarity=0.039 Sum_probs=115.9
Q ss_pred CHHHHHHHHHhcccCC-CCC--CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 144 LANEAMWVLRKMPEFD-LRP--DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 144 ~~~~A~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 220 (475)
..+.++.-+.++.... ..| ....|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445555555554321 111 13345666666667777777777777666543 3445666777777777777777777
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.|+...+... -+..++..+..++...|++++|.+.|+...+.. |+..........+...++.++|.+.|++....
T Consensus 120 ~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD----PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 7777666432 245566666666677777777777777766642 32211122222233456677777777554432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG---GS--VS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 301 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 371 (475)
. .|+... ..+ .....|+...+ ..++.+.+. .+ .| ...+|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~~~-~~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWG-WNI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccH-HHH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 222211 112 22233444333 233333321 11 01 12456667777777777777777777776553
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=1.3e-07 Score=77.66 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011905 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 316 (475)
...+.-+|...|+...|.+-+++..+.. +.+..+|..+...|-+.|+.+.|.+.|+...+.. +-+....|..-..+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3444555556666666666666655532 2334455555555555666666666665555432 11233444444455
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 395 (475)
|..|++++|...|+.......-+ ...+|..+.-+..+.|+.+.|.+.|++.++... -...+...+.+.....|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHH
Confidence 55555555555555555432211 123455555555555555555555555554321 1123344444445555555555
Q ss_pred HHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
..+++.....+. + ........|+.--+.|+.+.+-++=..
T Consensus 193 r~~~~~~~~~~~-~--~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 193 RLYLERYQQRGG-A--QAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHHHhccc-c--cHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 555555555443 2 444444444444455555555444333
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=3.6e-07 Score=75.00 Aligned_cols=194 Identities=14% Similarity=0.073 Sum_probs=91.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
|.-+|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|.....+|..
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCccchhhhhhHHHHhC
Confidence 3344445555555555555554442 1133444445555555555555555555554432 23344444444555555
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 285 GMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (475)
|++++|...|++....-. .--..+|..+.-+..+.|+.+.|...|++.++.+..- ....-.+.....+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF-PPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-ChHHHHHHHHHHhcccchHHHHH
Confidence 555555555554443211 1112344444444445555555555555555443321 22244444445555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++.....+. ++..+.-..|+.-...|+.+.+-++=..+.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555544432 4555555555544555555555544444444
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=8.2e-06 Score=78.46 Aligned_cols=374 Identities=11% Similarity=-0.005 Sum_probs=236.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCC-CHhhH
Q 011905 89 SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-DTIIY 167 (475)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~ 167 (475)
.+.-+...|..+.-.+.+.|+++.+.+.|++.... ..-..+.|+.+-..+...|.-..|+.+++.-......| |...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 44456777888888888888888888888887653 34456677777777888888888888888765433223 33333
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHhcc--CCC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC-
Q 011905 168 NNVIRLFC-EKGDMIAADELMKGMGL--IDL--YPDIITYVSMIKGFCNA-----------GRLEDACGLFKVMKRHGC- 230 (475)
Q Consensus 168 ~~ll~~~~-~~g~~~~a~~~~~~m~~--~~~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~- 230 (475)
-..-..|. +.|.+++++++-.+... .+. ......|..+.-+|... ....++++.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333333 34566666666555544 111 12233344443333321 124567778887777543
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC------
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA-LGCA------ 303 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~------ 303 (475)
.|++..| +.--|+..++++.|.+...+..+.+ -..+...|..+.-.+...+++.+|+.+.+.... .|..
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~--~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALN--RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 3433333 3344677788999999999888852 246778888888888888999999988876543 2210
Q ss_pred ------------CCHHHHHHHHHHHHhc---------C--------------CHHHHHHHHHHHH--------hCC----
Q 011905 304 ------------PNRVTISTLIKGFCVE---------G--------------NLDEAYQLIDKVV--------AGG---- 336 (475)
Q Consensus 304 ------------p~~~~~~~li~~~~~~---------~--------------~~~~a~~~~~~~~--------~~~---- 336 (475)
....|...++..+-.. | +..++.+....+. ..+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 0011222222222100 0 0111111111100 000
Q ss_pred -----CC--CC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 337 -----SV--SS------GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403 (475)
Q Consensus 337 -----~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (475)
.. |+ ...|......+.+.+..++|.-.+.+..+.. .-....|...-..+...|..++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 00 11 1234455666777888888887777776432 2234555555566778899999999998888
Q ss_pred HcCCCCCCchhhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK--LARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 404 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+ +.++.....+...+.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.+.|.+..+
T Consensus 712 ~ld---P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 712 ALD---PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hcC---CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 764 3467888999999999998888888 999999999 8999999999999999999999877654
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=2.8e-06 Score=79.71 Aligned_cols=302 Identities=13% Similarity=0.007 Sum_probs=181.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDI-ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
...|..+...+...|+.+.+.+.+........ .++. .........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34555566666667777776666655443221 1121 112222334567889999999999888763 224444442 2
Q ss_pred HHHH----hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011905 242 DGIC----RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317 (475)
Q Consensus 242 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 317 (475)
..+. ..+..+.+.+.+..... ..+........+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP---ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc---CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 2222 24555566665554211 112334445566678889999999999999998864 335667788888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcC
Q 011905 318 VEGNLDEAYQLIDKVVAGGSV-SSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPDGLAC-S--VMIRELCLGG 390 (475)
Q Consensus 318 ~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g 390 (475)
..|++++|...+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 999999999999998875432 222 3455788889999999999999999864322 1122111 1 2233334444
Q ss_pred CHHHHHHHHHHHHHc---CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CChhhHHHHHHHHH
Q 011905 391 QVLEGFCLYEDIEKI---GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW--------LQGPYVDKIVEHLK 459 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~~~~~~~l~~~~~ 459 (475)
..+.+.+. +.+... ................++...|+.++|.++++.+...... ......-....++.
T Consensus 240 ~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 240 HVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 43333322 222221 1000011122235667778899999999999998764322 11222234445667
Q ss_pred hcCCHhHHhhccc
Q 011905 460 KSGDEELITNLPK 472 (475)
Q Consensus 460 ~~g~~~~a~~l~~ 472 (475)
..|+.+.|.+++.
T Consensus 319 ~~g~~~~A~~~L~ 331 (355)
T cd05804 319 AEGNYATALELLG 331 (355)
T ss_pred HcCCHHHHHHHHH
Confidence 8899999987764
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.4e-06 Score=74.46 Aligned_cols=272 Identities=11% Similarity=-0.015 Sum_probs=201.2
Q ss_pred CCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhH
Q 011905 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202 (475)
Q Consensus 124 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 202 (475)
..+-++.....+...+...|+.++|+..|+...-.+ |+. .......-.+.+.|+.+....+...+.... .-....|
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 346677888889999999999999999999877543 322 222222334557888888888877776432 2334445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
-.-.......++++.|+.+-+..++... .+...|-.-...+...|+.++|.-.|+...... |-+...|.-++..|.
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHHH
Confidence 5555556677889999999998887642 255666666677889999999999999887742 457889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 283 GKGMMKEALGILDRMEALGCAPNRVTISTLI-KGFC-VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
..|...+|.-+-+..... ++.+..+.+.+- ..+. ....-++|.++++.-....+.- ....+.+...+...|+.+++
T Consensus 380 A~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-TPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred hhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-HHHHHHHHHHHHhhCccchH
Confidence 999999998877655433 233455554441 2222 2334578888988877654332 34567788888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
+.++++.... .||....+.|.+.+...+.+++|...|....+.+
T Consensus 458 i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 458 IKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999999865 8999999999999999999999999999988864
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=4e-06 Score=73.21 Aligned_cols=340 Identities=12% Similarity=0.028 Sum_probs=175.6
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 011905 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 185 (475)
+.|+.++|...+..+.... .++.+.+..|.-.+.-.|.+.+|.++-.+..+ ++..-..|.....+.++-++...
T Consensus 69 hLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred hhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHH
Confidence 4577777777776665544 44444444444444445667777766665543 33334445555556666666665
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcC
Q 011905 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL-DGICRLGSMERALELLGEMEKEG 264 (475)
Q Consensus 186 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~ 264 (475)
+-+.+... ..---+|.......-.+.+|.+++.+.... .|+....|..+ -+|.+..-++-+.+++.-..++
T Consensus 143 fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 143 FHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 55555421 122223344433444577888888887765 34555555443 4566777777788888777664
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------------------CCC-----HHHHHHHH
Q 011905 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC--------------------------APN-----RVTISTLI 313 (475)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------------------~p~-----~~~~~~li 313 (475)
++.++...|.......+.=.-..|.+-.+++...+- -|. +..-..|+
T Consensus 215 --~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 215 --FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred --CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 234455566555544443222222222222222210 010 01112334
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcC-------CHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL--VRTK-------RLKEAEKLFSKMLASGVKPDGL-ACSVMI 383 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g-------~~~~A~~~~~~m~~~~~~p~~~-~~~~li 383 (475)
-.|.+.+++.+|..+.+++ .|+.. |.-++.+. +..| ...-|.+.|.-.-+.+..-|.. --.++.
T Consensus 293 iYyL~q~dVqeA~~L~Kdl-----~PttP-~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDL-----DPTTP-YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred eeecccccHHHHHHHHhhc-----CCCCh-HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 4566778888887776554 22211 33333332 2222 2334555554433333332221 122333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011905 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
.++.-..++++.+.+++.+...-. ..|...| .+..+++..|++.+|.++|-......++.+......+.++|.+.|.
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~--NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFT--NDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 334444566666666666665432 1122222 3556667777777777777666555555555555566667777777
Q ss_pred HhHHhhc
Q 011905 464 EELITNL 470 (475)
Q Consensus 464 ~~~a~~l 470 (475)
.+.|.++
T Consensus 444 P~lAW~~ 450 (557)
T KOG3785|consen 444 PQLAWDM 450 (557)
T ss_pred chHHHHH
Confidence 6666544
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.97 E-value=3.7e-05 Score=72.69 Aligned_cols=380 Identities=12% Similarity=0.064 Sum_probs=236.8
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|+..++...+. -..+..-|+.+.-+....+++++|+..+......+ +-+...+.-+--.-++.|+++...
T Consensus 53 ~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred cccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 367777788777766542 22345556655556666778888988888887765 556777776666677777887777
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC-CCCChhhHHHHH------HHHHhcCCHHHHHHHH
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMI------KGFCNAGRLEDACGLF 222 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li------~~~~~~~~~~~a~~~~ 222 (475)
.......+.. +.....|.....++.-.|+...|..++++..+.. -.|+...+.... ....+.|..++|++.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7777766542 2345667777788888888888888888876644 245655554322 2345667777777776
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH-HHHHhcCCHHHHH-HHHH-----
Q 011905 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI-QIFCGKGMMKEAL-GILD----- 295 (475)
Q Consensus 223 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~-~~~~----- 295 (475)
..-... +.-....-..-...+.+.+++++|..++..+.... ||...|...+ .++.+..+..++. .+|.
T Consensus 209 ~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn----Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 209 LDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN----PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC----chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 654433 11122223345567788889999999999888863 6666555443 3443333333333 3333
Q ss_pred -----------------------------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC------
Q 011905 296 -----------------------------RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA----GG------ 336 (475)
Q Consensus 296 -----------------------------~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~------ 336 (475)
.+.+.|+++ ++..+...|-.....+-..++.-.+.. .|
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 333334332 222333333222222211122211111 11
Q ss_pred ----CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011905 337 ----SVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL-ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 337 ----~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 409 (475)
-+|+. .++..++..|-..|+++.|...++....+ .|+.. -|..=.+.+...|++++|..++++..+.+.
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-- 436 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-- 436 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc--
Confidence 13333 35567788899999999999999999855 77653 444455778999999999999999999763
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--------hHH--HHHHHHHhcCCHhHHh
Q 011905 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP--------YVD--KIVEHLKKSGDEELIT 468 (475)
Q Consensus 410 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--------~~~--~l~~~~~~~g~~~~a~ 468 (475)
+|...-.--..-..++++.++|.++.....+.|. +.. .|- .-..+|.+.|++..|.
T Consensus 437 -aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL 502 (700)
T KOG1156|consen 437 -ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL 502 (700)
T ss_pred -hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH
Confidence 2544443566667789999999999998888774 211 111 2245666666666554
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.9e-07 Score=78.28 Aligned_cols=193 Identities=10% Similarity=0.012 Sum_probs=100.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHH-HHHHHhc
Q 011905 99 RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV-IRLFCEK 177 (475)
Q Consensus 99 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~ 177 (475)
..+..+.+..++..+++++....++. +.+......+..+|....++..|...|+++... .|...-|... ...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34444455566666666666555543 335555555666666666666666666666543 2444433321 3344556
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 011905 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKG--FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
+.+..|+++...|... |+...-..-+.+ ....+|+..+..+.++....| +..+.+.......+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 6666666666666531 222111111121 223455666666665554322 34444444555556666666666
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011905 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 303 (475)
-|+...+-+ |. .....||..+.. .+.|+++.|++...++.+.|++
T Consensus 166 kFqaAlqvs-Gy-qpllAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 166 KFQAALQVS-GY-QPLLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHhhc-CC-CchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 666666532 22 233455544433 3446666666666666666654
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=1e-07 Score=84.92 Aligned_cols=224 Identities=12% Similarity=0.110 Sum_probs=109.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH-HHHH
Q 011905 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV-SMIK 207 (475)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~ 207 (475)
......+.+++...|+++.++ ..+.+.. .|.......+...+...++-+.++.-+++.......++..++. ....
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 334444556666666654433 3333322 4555555444444433344455555555444333222222222 2223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----Hh
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----CG 283 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~ 283 (475)
.+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.+ .|... ..+..++ .-
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~----eD~~l-~qLa~awv~l~~g 179 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID----EDSIL-TQLAEAWVNLATG 179 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS----CCHHH-HHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcHHH-HHHHHHHHHHHhC
Confidence 445566677666666432 245555566666667777777777777666521 23222 2222222 22
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHH
Q 011905 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL-KEAEK 362 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~ 362 (475)
...+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+....+.. +..+...++.+....|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHH
Confidence 23466666666665443 3455666666666666666666666666665554432 344444555555555555 44555
Q ss_pred HHHHHHH
Q 011905 363 LFSKMLA 369 (475)
Q Consensus 363 ~~~~m~~ 369 (475)
.+.++..
T Consensus 258 ~l~qL~~ 264 (290)
T PF04733_consen 258 YLSQLKQ 264 (290)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 5555554
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=4.8e-06 Score=80.43 Aligned_cols=351 Identities=15% Similarity=0.151 Sum_probs=205.8
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------CccCHHhHHHHHHHHHh
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE-G--------CVVSVKMMKVIFNLCEK 141 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~li~~~~~ 141 (475)
.++-+.|++-.... .+...|..+.+.+.+.++.+.|.-.+-.|... | ..++ ++=..+.....+
T Consensus 741 iG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 34555555544333 35567888888888888888777666655421 1 1122 333334445667
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 142 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
.|..++|+.+|.+.++ |..|=..|-..|.+++|.++-+.--+. .=..||.....-+-..+|.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHH
Confidence 8999999999998876 344555667789999999987654322 2245666666777777888888888
Q ss_pred HHHHH----------HCC---------CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 222 FKVMK----------RHG---------CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 222 ~~~m~----------~~g---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
|+... ... -..|...|......+-..|+.+.|+.+|..... |-.++...|
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C 949 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKC 949 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEe
Confidence 77532 110 012333444444555556777777777766543 445666667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-----------
Q 011905 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL----------- 351 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----------- 351 (475)
-.|+.++|-++-++ .| |......|.+.|-..|++.+|...|-+... +...|+.|
T Consensus 950 ~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred eccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHH
Confidence 77777777777554 22 555666777888888888888877766543 22222211
Q ss_pred --HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCCchhhHHHH
Q 011905 352 --VRTK--RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE--------DIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 352 --~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~~l 419 (475)
...| +.-.|-++|++. |.. +...+..|-++|.+.+|+++-= ++...++.|..|....+..
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 1111 122233333322 211 1122334566666666654421 2333445555567777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHH----------HcCCC----------------CC----hhhHHHHHHHHHhcCCHhHHhh
Q 011905 420 LLGLCRKNHSVEAAKLARFML----------KKRIW----------------LQ----GPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~----------~~~~~----------------~~----~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
.+.++...++++|..++-... .+|++ |+ ...+..+...|.++|.+..|-+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 777777777777766543322 11221 11 1366788889999999988866
Q ss_pred ccccCC
Q 011905 470 LPKIGG 475 (475)
Q Consensus 470 l~~~~g 475 (475)
=...||
T Consensus 1167 KfTQAG 1172 (1416)
T KOG3617|consen 1167 KFTQAG 1172 (1416)
T ss_pred HHhhhh
Confidence 554443
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=7.5e-08 Score=85.81 Aligned_cols=250 Identities=13% Similarity=0.067 Sum_probs=159.1
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 218 (475)
+--.|++..++.-.+ .....-+.+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344678888886555 322222234455666778888888876544 4444433 66666666665555444555666
Q ss_pred HHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 219 CGLFKVMKRHGCA-ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 219 ~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
+.-+++....+.. .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6555554443333 23333333445667789999998887543 24556667788899999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011905 298 EALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 298 ~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 373 (475)
.+.+ +..+...+..++.. .+++.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ .
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 8753 33445555555443 24688999999997664 45677888888888999999999999988887653 2
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 011905 374 PDGLACSVMIRELCLGGQV-LEGFCLYEDIEKIG 406 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~ 406 (475)
-+..+...++......|+. +.+.+++.++....
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 2456666777777777776 66778888888753
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=1.9e-05 Score=83.85 Aligned_cols=335 Identities=13% Similarity=-0.008 Sum_probs=202.9
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC--C----CCCh--hhHHHHHHHH
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID--L----YPDI--ITYVSMIKGF 209 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~----~~~~--~~~~~li~~~ 209 (475)
.....|++..+...++.+.......+..........+...|+++++...+......- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777777766432111222233344555667889999988888764321 0 1111 1122233455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CC--cHHHHHHHHHHHH
Q 011905 210 CNAGRLEDACGLFKVMKRHGCAANL----VAYSALLDGICRLGSMERALELLGEMEKEGGDC-SP--NVVTYTSVIQIFC 282 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~--~~~~~~~li~~~~ 282 (475)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++........ .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999987663111121 244556667788999999999998876421100 11 1234455666788
Q ss_pred hcCCHHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--ChhhHHHHHHHH
Q 011905 283 GKGMMKEALGILDRMEA----LGCA--P-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--SVS--SGGCYSSLVVEL 351 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 351 (475)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999998877654 2221 1 22334455566777899999999988875431 112 233455566677
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CchhhHHHHHHHHH
Q 011905 352 VRTKRLKEAEKLFSKMLAS--GVKPDGL--A-C-SVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-VDSDIHSVLLLGLC 424 (475)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~--~~~p~~~--~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~ 424 (475)
...|+.++|.+.+.+.... ....... . . ...+..+...|+.+.|.+.+........... .....+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999988887542 1111110 1 0 1122334557889998888766544211100 00112345677788
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 425 RKNHSVEAAKLARFMLKK----RIWL-QGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..|++++|..++++.... |... ...+...+..++.+.|+.+.|.+.+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999888764 3222 22356677888899999988877654
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.90 E-value=6.4e-05 Score=71.05 Aligned_cols=356 Identities=10% Similarity=0.016 Sum_probs=177.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHh-cCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC
Q 011905 101 CEMSRIKQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 179 (475)
+..+...++.......|+.... ..+.-....|...+....+.+-++.+..+|++..+. ++..-+--|..+++.++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccc
Confidence 3344444555555555554322 233334456666666666667777777777776652 33335556667777777
Q ss_pred hhHHHHHHHHhccCC------CCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcC
Q 011905 180 MIAADELMKGMGLID------LYPDIITYVSMIKGFCNAGRLE---DACGLFKVMKRHGCAAN--LVAYSALLDGICRLG 248 (475)
Q Consensus 180 ~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g 248 (475)
+++|.+.+....... .+.+...|..+-+..++.-+.- ....+++.+... -+| ...|+.|.+-|.+.|
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhh
Confidence 777777776664421 1233344554444444433322 222333333322 223 245677777777777
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHcC-----
Q 011905 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG----------------------MMKEALGILDRMEALG----- 301 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~m~~~~----- 301 (475)
++++|..+|++..+. ..++.-|+.+.++|+.-. +++-.+.-|+.+....
T Consensus 263 ~~ekarDvyeeai~~----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhHHHHHHHHHHHHh----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 777777777776663 234444555555544321 1122222233222211
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 302 ------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS------SGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 302 ------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
-+-+...|..-+ -...|+..+-...+.+.++. +.| -...|..+...|-..|+++.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 011112222111 12234555556666665543 111 134567777777777777777777777765
Q ss_pred CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------CC------chhhHHHHHHHHHhcCCHH
Q 011905 370 SGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS---------SV------DSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 370 ~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~------~~~~~~~li~~~~~~g~~~ 430 (475)
-.. +.. .+|..-...=.+..+++.|+++.+......-.| ++ +...|...++..-..|-++
T Consensus 416 V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 416 VPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred CCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 432 111 222222222234456666666666554321100 00 2344555555555667777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 431 EAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 431 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
....+++++++..+ .++...-.....+.+...++++-++.
T Consensus 495 stk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 495 STKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777664 33333333344444444455544443
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=1.4e-05 Score=84.89 Aligned_cols=308 Identities=13% Similarity=0.007 Sum_probs=196.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC----C--CCCC--HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh----hhH
Q 011905 135 IFNLCEKARLANEAMWVLRKMPEF----D--LRPD--TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI----ITY 202 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~m~~~----~--~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~ 202 (475)
....+...|++++|...++...+. + ..+. ......+...+...|+++.|...+++........+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 344556788999999988876432 1 0111 122223344566789999999999987653111121 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC---CCcHH
Q 011905 203 VSMIKGFCNAGRLEDACGLFKVMKRH----GC-AANLVAYSALLDGICRLGSMERALELLGEMEKEG--GDC---SPNVV 272 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~---~~~~~ 272 (475)
+.+...+...|++++|...+++.... |- .....++..+...+...|++++|...+++..... .+. .....
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 55666778899999999999887642 11 1112345566778889999999999988765521 111 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChh--h-
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEAL--GCAP--NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--SVSSGG--C- 343 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~- 343 (475)
.+..+...+...|++++|...+.+.... ...+ ....+..+...+...|+.+.|...++...... ...... .
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 3445566677789999999999876542 1112 23344556667888999999999998875421 111110 0
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhh
Q 011905 344 -YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDI 415 (475)
Q Consensus 344 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~ 415 (475)
....+..+...|+.+.|.+.+............ ..+..+..++...|+.++|...+++.... |... ....+
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~-~~a~~ 733 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS-DLNRN 733 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH-HHHHH
Confidence 011224455688999999998776532111111 11345566788899999999999988764 2211 12345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 416 HSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+..+..++.+.|+.++|.+.+.++++..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6667788889999999999999998765
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=4.8e-05 Score=75.38 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
..|..+..+-.+.|...+|.+-|-+. .|+..|.-++....+.|.+++-.+.+...++..-.|... +.|+-
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 34555555555555555554444222 233345555555555555555555554444443333322 24444
Q ss_pred HHHhcCCHHHHH
Q 011905 315 GFCVEGNLDEAY 326 (475)
Q Consensus 315 ~~~~~~~~~~a~ 326 (475)
+|++.+++.+.+
T Consensus 1175 AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1175 AYAKTNRLTELE 1186 (1666)
T ss_pred HHHHhchHHHHH
Confidence 555555444433
No 91
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=3.5e-06 Score=85.79 Aligned_cols=231 Identities=14% Similarity=0.114 Sum_probs=184.0
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN---VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 307 (475)
+-+...|-..|......++.++|.++++++... .++... ...|.++++.-...|.-+...++|+++.+.. . .-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHH
Confidence 335677888899999999999999999998874 222221 2357777777777888889999999998863 1 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSVMIR 384 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~ 384 (475)
.|..|...|.+.+++++|.++++.|.++-- .....|...+..+.++++-+.|..++.+.++. -|. .......+.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 688999999999999999999999988643 45678999999999999999999999999875 444 233344444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcC
Q 011905 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP--YVDKIVEHLKKSG 462 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g 462 (475)
.-.+.|+.+.++.+|+....... -....|+.+++.-.++|+.+.+..+|++.+..++.+-.. .|...++.-.+.|
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayP---KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYP---KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCc---cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 55678999999999999998752 367889999999999999999999999999998766543 5677888888888
Q ss_pred CHhHHhhc
Q 011905 463 DEELITNL 470 (475)
Q Consensus 463 ~~~~a~~l 470 (475)
+-+.++.+
T Consensus 1686 de~~vE~V 1693 (1710)
T KOG1070|consen 1686 DEKNVEYV 1693 (1710)
T ss_pred chhhHHHH
Confidence 87776654
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=2.3e-06 Score=79.59 Aligned_cols=248 Identities=16% Similarity=0.118 Sum_probs=186.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHH
Q 011905 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (475)
+.+.|++.+|.=.|+..++... -+...|..|...-...++-..|+..+.+..+.. +-+..+.-.|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhhhHH
Confidence 4578889999999998888753 377888888888888888889999999988853 456777888888889999889
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCC
Q 011905 289 EALGILDRMEALGCAPNRVTISTLI-----------KGFCVEGNLDEAYQLIDKVV-AGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li-----------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
.|++.++.-.....+ |..+. ..+.....+.+..++|-++. ..+..+|..+...|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999998877554211 00000 11112223444555555554 44545778888999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011905 357 LKEAEKLFSKMLASGVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
+++|.+.|+.++.. +| |...||.|-..++...+.++|+.-|++.++.. |. -+.+...|..+|...|.+++|.+.
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~-yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PG-YVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CC-eeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999865 55 56889999999999999999999999999863 42 456677788899999999999999
Q ss_pred HHHHHHcC---------CCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 436 ARFMLKKR---------IWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 436 ~~~m~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
|-.++... ..++..+|..|-.++.-.++.+.+.+.
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 87766431 112346888888888888888855544
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=7.7e-05 Score=74.04 Aligned_cols=249 Identities=16% Similarity=0.134 Sum_probs=159.5
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 218 (475)
+...+-+++|..+|++.. .+....+.|+. .-+..++|.++-++.. ....|..+..+-.+.|...+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 334444555555555432 23333333333 2345556665555432 356788888888888888888
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.+-|-+. -|+..|..+++...+.|.|++-.+.+....+... .|. .=+.+|-+|++.++..+..+++
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~--E~~--id~eLi~AyAkt~rl~elE~fi---- 1189 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR--EPY--IDSELIFAYAKTNRLTELEEFI---- 1189 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc--Ccc--chHHHHHHHHHhchHHHHHHHh----
Confidence 7665432 3777899999999999999999998877766432 233 3456888999998887766554
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011905 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 299 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 378 (475)
..||......+-+-|...+.++.|.-+|..... |..|...+...|++..|.+.-++. -+..|
T Consensus 1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~TLV~LgeyQ~AVD~aRKA------ns~kt 1251 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLASTLVYLGEYQGAVDAARKA------NSTKT 1251 (1666)
T ss_pred ---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHhhhc------cchhH
Confidence 247777777888888888889888888766532 778888888888888887766654 24567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
|.-+-.+|...+.+.-|. |-..++. ....-..-++.-|-..|-+++.+.+++..+
T Consensus 1252 WK~VcfaCvd~~EFrlAQ-----iCGL~ii--vhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLAQ-----ICGLNII--VHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHHHhchhhhhHHH-----hcCceEE--EehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 777777776666554332 2222221 133334555555666666666655555443
No 94
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.78 E-value=0.00017 Score=69.83 Aligned_cols=341 Identities=15% Similarity=0.065 Sum_probs=220.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCcc-CHHhHHHHHHHHHh-cCCHHHHHHHHHhcccC--CC--CCCHhh
Q 011905 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEK-ARLANEAMWVLRKMPEF--DL--RPDTII 166 (475)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~--~~--~~~~~~ 166 (475)
..+.|......+...+.-..|..+++......-.| +...+-..-..|.+ .+.++++++.-.+..+. +. ......
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 44556666556666777788888888765544234 34444444445554 46667776666655541 11 123445
Q ss_pred HHHHHHHHHhc-----------CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 011905 167 YNNVIRLFCEK-----------GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 167 ~~~ll~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
|..+.-+|... ....++++.+++..+.+ +.|......+.--|+..++++.|.+..++..+-+-.-+..
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~ 514 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAK 514 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHH
Confidence 55555555432 12456788888886654 2333333334445677889999999999999986667899
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------------
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME----------------- 298 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------------- 298 (475)
.|..+.-.+...+++.+|+.+.+.....- + .|-.....-+..-...++.++++.....+.
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~-~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~ 591 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEF-G--DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGK 591 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHh-h--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhh
Confidence 99999999999999999999999877641 1 111111111111111222222222211110
Q ss_pred ----------------------------------HcC---------CC--CC------HHHHHHHHHHHHhcCCHHHHHH
Q 011905 299 ----------------------------------ALG---------CA--PN------RVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 299 ----------------------------------~~~---------~~--p~------~~~~~~li~~~~~~~~~~~a~~ 327 (475)
..| +. |+ ...|......+.+.+..++|..
T Consensus 592 ~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~ 671 (799)
T KOG4162|consen 592 LLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARS 671 (799)
T ss_pred hhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 000 00 11 1122344456667778888887
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHH
Q 011905 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFC--LYEDIEK 404 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~--~~~~~~~ 404 (475)
.+.+.....+. ....|......+...|+..+|.+.|...... .|+ .....++...+.+.|+...|.. ++.++.+
T Consensus 672 CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 672 CLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 77776654422 4556777777788889999999999988854 565 4677888889999998887777 9999999
Q ss_pred cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 405 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+ +.+...|..+...+-+.|+.+.|.+.|+......
T Consensus 749 ~d---p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 749 LD---PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hC---CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 87 3488999999999999999999999999988764
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.75 E-value=0.00011 Score=64.20 Aligned_cols=297 Identities=13% Similarity=0.056 Sum_probs=170.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHH-HHHHHHhcC
Q 011905 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS-MIKGFCNAG 213 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~ 213 (475)
+-..+...|++..|+.-|...++.+ +.+-.++-.-...|...|+-..|+.=+....+. +||-..-.. -...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3444445555566666555555421 111112222233455555555555555554432 344332211 122344566
Q ss_pred CHHHHHHHHHHHHHCCCCc--CH------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 214 RLEDACGLFKVMKRHGCAA--NL------------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~--~~------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
.++.|..=|+...+....- .. ......+..+.-.|+...|+.....+.+- .+-|...|..-..
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi---~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI---QPWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc---CcchhHHHHHHHH
Confidence 6666666666555542100 00 11123344455677888888888877773 2456777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh----HHHH--------
Q 011905 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC----YSSL-------- 347 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l-------- 347 (475)
+|...|.+..|+.=++...+.. ..++.++..+-..+...|+.+.++...++.++.+ ||... |-.|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHH
Confidence 7888888888777666655443 2345555566667777788888877777777644 33221 1111
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 348 -VVELVRTKRLKEAEKLFSKMLASGVKPDGL---ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 348 -i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+......+++.++++..+...+........ .+..+-.++...|++.+|++...+..+.. +.|..++.--..+|
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d---~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID---PDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC---chHHHHHHHHHHHH
Confidence 122345567777777777776653221122 23344455566788888888888888754 23677787778888
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011905 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
.-...+++|+.-|+.+.+.+
T Consensus 352 l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 88888888888888887665
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.75 E-value=9.6e-06 Score=77.49 Aligned_cols=327 Identities=15% Similarity=0.099 Sum_probs=179.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhH
Q 011905 88 SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167 (475)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 167 (475)
.+++.-...-...++.+...++-+.|-++-+. +..+ -+.|..|.+.|.+..|...-..-.. +..|....
T Consensus 583 ~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s--------dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il 651 (1636)
T KOG3616|consen 583 KGHPALEKLKRSYLQALMDTGQDEKAAELKES--------DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEIL 651 (1636)
T ss_pred cCChHHHHHHHHHHHHHHhcCchhhhhhhccc--------cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHH
Confidence 34443333334455666667776666554221 1112 2357778888877776654432211 23466666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------------HHCCCC
Q 011905 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM----------------KRHGCA 231 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----------------~~~g~~ 231 (475)
..+..++.+..-+++|-.+|+++.. |+ ..+..|-+-+-+.+|.++-+-. ...| +
T Consensus 652 ~~ia~alik~elydkagdlfeki~d----~d-----kale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q 721 (1636)
T KOG3616|consen 652 EHIAAALIKGELYDKAGDLFEKIHD----FD-----KALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-Q 721 (1636)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHhhC----HH-----HHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-h
Confidence 6666666666666666666666542 11 1122222211222332222111 0000 0
Q ss_pred cC--------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011905 232 AN--------LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303 (475)
Q Consensus 232 ~~--------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 303 (475)
.| .......+.+......|.+|+.+++.+..+. .-..-|..+...|...|+++.|.++|-+.-
T Consensus 722 ~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk----~~s~yy~~iadhyan~~dfe~ae~lf~e~~----- 792 (1636)
T KOG3616|consen 722 LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK----TASGYYGEIADHYANKGDFEIAEELFTEAD----- 792 (1636)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc----cccccchHHHHHhccchhHHHHHHHHHhcc-----
Confidence 00 0111223444555667777777777776532 233345666777777888887777775432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011905 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 304 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 383 (475)
.++-.|..|.+.|+++.|.++-++.. |.......|-+-..-+-.+|++.+|.++|-..- .|+ ..|
T Consensus 793 ----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~ai 857 (1636)
T KOG3616|consen 793 ----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAI 857 (1636)
T ss_pred ----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHH
Confidence 24556677778888887777765543 333344556555666667777777777765442 343 235
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011905 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
..|-+.|..+..+++.++-.... -..+...+...|-..|+.++|.+-|-+.. -|...+..|..++-
T Consensus 858 qmydk~~~~ddmirlv~k~h~d~-----l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~l 923 (1636)
T KOG3616|consen 858 QMYDKHGLDDDMIRLVEKHHGDH-----LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASEL 923 (1636)
T ss_pred HHHHhhCcchHHHHHHHHhChhh-----hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhh
Confidence 56677777777666655443321 23455666667777777777777665442 34555666777777
Q ss_pred HhHHhhcccc
Q 011905 464 EELITNLPKI 473 (475)
Q Consensus 464 ~~~a~~l~~~ 473 (475)
++.|.++.+.
T Consensus 924 w~dayriakt 933 (1636)
T KOG3616|consen 924 WEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHhc
Confidence 7777777654
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=7.8e-06 Score=69.80 Aligned_cols=329 Identities=12% Similarity=0.072 Sum_probs=227.1
Q ss_pred cCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhH
Q 011905 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202 (475)
Q Consensus 123 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 202 (475)
.|+.....-+.+++..+.+..+++.|++++..-.+.. +.+......|..+|....++..|-+.++++... .|...-|
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qY 80 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQY 80 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHH
Confidence 3445555667888888899999999999999887764 237788889999999999999999999999754 4666666
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 203 VSM-IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL--DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 203 ~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
... ...+.+.+.+..|+++...|... ++...-..-+ ......+++..+..++++....+ +..+.+....
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-----~Ad~~in~gC 152 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-----EADGQINLGC 152 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-----ccchhccchh
Confidence 533 45667889999999999888653 2322222222 23445788999999888876532 4455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-----------------
Q 011905 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG----------------- 342 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------- 342 (475)
...+.|++++|.+-|+...+.+---....|+..+. ..+.++++.|++...+++++|+...+.
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 67799999999999998887544444567776664 456789999999999999998764211
Q ss_pred -----------hHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 343 -----------CYSSLVVELVRTKRLKEAEKLFSKMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410 (475)
Q Consensus 343 -----------~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 410 (475)
.+|.-...+.+.|+++.|.+.+..|.-+ .-..|+.|...+.-. ...+++.+..+-+.-+.+.+.
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP--- 307 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP--- 307 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC---
Confidence 1333333456778899998888888532 234566776554322 234567777777777776643
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhc-CCHhHHh
Q 011905 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW-LQGPYVDKIVEHLKKS-GDEELIT 468 (475)
Q Consensus 411 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~-g~~~~a~ 468 (475)
....||..++..||++.-++-|-.++-+--..-.+ .++-.|+ +++++.-. -..|++.
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~ 366 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAF 366 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHH
Confidence 35689999999999999999998887664433322 3333333 34444333 3344443
No 98
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=2.1e-08 Score=56.97 Aligned_cols=32 Identities=34% Similarity=0.621 Sum_probs=15.2
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHh
Q 011905 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190 (475)
Q Consensus 159 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 190 (475)
|++||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=3.3e-06 Score=81.48 Aligned_cols=306 Identities=14% Similarity=0.077 Sum_probs=182.4
Q ss_pred ccCHHhHHHHHH--HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccC-C--------
Q 011905 126 VVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI-D-------- 194 (475)
Q Consensus 126 ~~~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~-------- 194 (475)
.-|..|-..+++ .|..-|+.+.|.+-.+.++ +..+|..+.++|.+..+.+-|.-.+-.|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 456777777776 5778899999988887765 4567999999999998888877666665331 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH
Q 011905 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274 (475)
Q Consensus 195 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (475)
-.|+ .+=..+.-.....|.+++|+.+|++.++. ..|=..|-..|+|++|.++-+.-.+ . .-..||
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR--i---HLr~Ty 861 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR--I---HLRNTY 861 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc--e---ehhhhH
Confidence 1122 22223333445778899999999887653 3344566778888888887664332 1 122345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----------HcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011905 275 TSVIQIFCGKGMMKEALGILDRME----------ALG---------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~----------~~~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 335 (475)
.....-+-..++.+.|++.|++.. ... -..|...|......+-..|+.+.|+.+|....+.
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh
Confidence 555555566677777777665421 110 1123344555555556678888888887766542
Q ss_pred C--------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 011905 336 G--------------------SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG------ 389 (475)
Q Consensus 336 ~--------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~------ 389 (475)
- -.-|..+...|.+.|...|++.+|..+|.+.. ++...|+.|-..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHH
Confidence 0 01133445556666666666666666666553 222233222111
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHc--CCCCChhh
Q 011905 390 ---------GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR--------FMLKK--RIWLQGPY 450 (475)
Q Consensus 390 ---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~--~~~~~~~~ 450 (475)
.+.-.|-++|++. | .-+...+..|-+.|.+.+|+++-- +++.. .-..|+..
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~---g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEEL---G-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHc---c-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 1122222232221 1 113344556778888888877632 22322 33567888
Q ss_pred HHHHHHHHHhcCCHhHHhhcc
Q 011905 451 VDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~l~ 471 (475)
++...+-++...+++.|..++
T Consensus 1083 l~RcadFF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLL 1103 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 888888888888888887765
No 100
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=0.00025 Score=66.53 Aligned_cols=321 Identities=14% Similarity=0.140 Sum_probs=191.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCC--------------------
Q 011905 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-------------------- 162 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-------------------- 162 (475)
.+-+.+..++|+..++.+. +.+..+...-...|.+.+++++|+++|+.+.+.+.+-
T Consensus 88 c~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~ 163 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL 163 (652)
T ss_pred HHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence 3456788899988887321 2234466666678899999999999999997754211
Q ss_pred -------CHhhHHH---HHHHHHhcCChhHHHHHHHHhccC-------CCCCChhh-------HHHHHHHHHhcCCHHHH
Q 011905 163 -------DTIIYNN---VIRLFCEKGDMIAADELMKGMGLI-------DLYPDIIT-------YVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 163 -------~~~~~~~---ll~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~-------~~~li~~~~~~~~~~~a 218 (475)
...+|.. ....++..|++..|+++++...+. +-.-+... ---+.-.+-..|+.++|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 0112222 234566789999999999988321 11111111 11244456678999999
Q ss_pred HHHHHHHHHCCCCcCHHH----HHHHHHHHHhc---------------------------------------------CC
Q 011905 219 CGLFKVMKRHGCAANLVA----YSALLDGICRL---------------------------------------------GS 249 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~----~~~ll~~~~~~---------------------------------------------g~ 249 (475)
.+++...++.... |... -|.|+..-... +.
T Consensus 244 ~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 244 SSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999887532 3321 12222111000 01
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011905 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFC--GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 327 (475)
.+.+.++.... .+..|.. .+.+++..+. +...+.++.+++...-+....-.....-..+......|+++.|.+
T Consensus 323 ~~q~r~~~a~l----p~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 323 MDQVRELSASL----PGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHHHHHHHHhC----CccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 11111111111 1112222 2333333322 222466777777666554322224455666777889999999999
Q ss_pred HHH--------HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH----HHHhcCCHH
Q 011905 328 LID--------KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDGLACSVMIR----ELCLGGQVL 393 (475)
Q Consensus 328 ~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~----~~~~~g~~~ 393 (475)
++. .+.+-+..| .+..+++..+.+.++.+.|..++.+.+.. .-.+......+++. .-.+.|+-+
T Consensus 398 il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 999 555555555 34556677778888877788777776542 11222233333333 234669999
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
+|..+++++.+.. +.|..+...++.+|++. +++.|..+-+.+
T Consensus 476 ea~s~leel~k~n---~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 476 EASSLLEELVKFN---PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHhC---CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999964 35889999999999875 466676665443
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2.1e-08 Score=56.98 Aligned_cols=28 Identities=36% Similarity=0.871 Sum_probs=10.6
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
.||..+|++||.+|++.|++++|.++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333333333333333333333
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=3.3e-06 Score=78.56 Aligned_cols=255 Identities=15% Similarity=0.049 Sum_probs=186.9
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
..-+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+++..+... -|....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhH
Confidence 345678999999999999988766 56788999999999999999999999999998753 3778888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHH---------HHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcC
Q 011905 251 ERALELLGEMEKEGGDCSPNVVTYTSVI---------QIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~g~~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~ 320 (475)
..|.+.++...... +|-. |...- ..+..........++|-++ .+.+..+|......|--.|.-.|
T Consensus 370 ~~Al~~L~~Wi~~~---p~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNK---PKYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhC---ccch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 99999999987632 1100 00000 1111222334455555444 45554567777778888888999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLY 399 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~ 399 (475)
++++|.+.|+..+...+. |..+||.|...++...+.++|+..|.+.++. +|+. +..-.|.-+|...|.+++|...|
T Consensus 445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999886543 7789999999999999999999999999965 7774 34445566789999999999988
Q ss_pred HHHHHcCC-------CCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011905 400 EDIEKIGF-------LSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 400 ~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
-......- .|..+..+|..|=.++.-.++.|-+.+.
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 87664311 1111234676666666666666644443
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=0.00017 Score=66.89 Aligned_cols=375 Identities=11% Similarity=0.038 Sum_probs=193.8
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccC-HHhHHHHHHHHHhcCCHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEA 148 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A 148 (475)
..++.+.|.+.|.-...... ++...|+.-...+...++++.|.+=-...++. .|+ ...|.-...++.-.|++++|
T Consensus 14 s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred ccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 46777777777766654433 36667777666777777777776554444443 444 35677777777777888888
Q ss_pred HHHHHhcccCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHhccCC---CCCChhhHHHHHHHHH----------hc
Q 011905 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADELMKGMGLID---LYPDIITYVSMIKGFC----------NA 212 (475)
Q Consensus 149 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~----------~~ 212 (475)
+.-|.+-.+.. +.+...++-+..++.-.. +.-.--.++..+...- .......|..++...- .-
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 88888777653 234555555555541110 0000000000000000 0000011111111110 00
Q ss_pred CCHHHHHHHHHH-----HHHCC-------CCc----------------------CHHHHHHHHHHHHhcCChHHHHHHHH
Q 011905 213 GRLEDACGLFKV-----MKRHG-------CAA----------------------NLVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 213 ~~~~~a~~~~~~-----m~~~g-------~~~----------------------~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
..+..+...+.. +...| ..| -..-...+.++..+..+++.|.+-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 001111111100 00000 000 01112344555555555555555555
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHH
Q 011905 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST-------LIKGFCVEGNLDEAYQLIDK 331 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~~~~~~a~~~~~~ 331 (475)
..... .-+..-++....+|...|.+.+....-....+.|-. ...-|+. +-.+|.+.++++.+...|.+
T Consensus 249 ~a~el----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 249 KALEL----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHhH----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 55542 123333344444555555444444333333332211 1111111 11233444455555555554
Q ss_pred HHhCCCCCChh-------------------------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011905 332 VVAGGSVSSGG-------------------------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 332 ~~~~~~~~~~~-------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
.......|+.. -...=...+.+.|++..|++.|.++++.. +-|...|..-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 44332222211 01112455678899999999999999875 44678888888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
.+.|.+..|+.-.+...+.+ +.....|..-..++.-..+|++|++.|++.++.. +.+......+.++..
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~---p~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD---PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 99999999998888888764 2355666666666667789999999999998887 445455555555444
No 104
>PLN02789 farnesyltranstransferase
Probab=98.67 E-value=4.3e-05 Score=69.27 Aligned_cols=209 Identities=11% Similarity=0.029 Sum_probs=142.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh
Q 011905 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 180 (475)
.++...+..+.|+.+.+.+.+.. +-+..+|+.--.++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 34455667788888888877764 445556665555556666 5788999998888765 34666777666666666653
Q ss_pred --hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CC----hH
Q 011905 181 --IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---GS----ME 251 (475)
Q Consensus 181 --~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~----~~ 251 (475)
++++.+++++.+.+ +-+..+|+...-++...|+++++++.++++++.+.. |..+|+.....+.+. |. .+
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 67788888887665 567788888888888888899999999999887644 666776666555544 22 24
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011905 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK----GMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 318 (475)
+.++...+++... +-|...|+-+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 201 ~el~y~~~aI~~~---P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN---PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC---CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 5667766666642 45677888777777763 34456777777766543 3356667777777764
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=2.1e-05 Score=80.36 Aligned_cols=225 Identities=12% Similarity=0.072 Sum_probs=146.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYP---DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...|-..|......++.+.|.+++++.+.. +++- -...|.++++.-...|.-+...++|+++.+.- -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4456666777777777888888877776542 1111 12356666666666677777777887777641 1345667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN---RVTISTLIKG 315 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~ 315 (475)
.|...|.+.+.+++|.++++.|.+. . .-....|...+..+.+..+-++|..++.+..+. -|. .......+..
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-F--GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-h--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 7777788888888888888888774 2 245567777777777777777788887776654 222 3334445555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG--LACSVMIRELCLGGQVL 393 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 393 (475)
-.+.|+.+++..+|+..+...+. -...|+..++.-.++|+.+.+..+|++....++.|-. ..|...+..=-..|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 56777888888888877766544 3456788888777888888888888887777665532 33444444333344443
Q ss_pred HH
Q 011905 394 EG 395 (475)
Q Consensus 394 ~a 395 (475)
.+
T Consensus 1689 ~v 1690 (1710)
T KOG1070|consen 1689 NV 1690 (1710)
T ss_pred hH
Confidence 33
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=6.5e-06 Score=78.69 Aligned_cols=211 Identities=16% Similarity=0.119 Sum_probs=135.1
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+|-...-..+...+.+.|-...|..+|+++.. |..+|.+|+..|+..+|..+..+..+. +||...|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 33334445566777778888888888876653 556777788888888888877776663 56777776
Q ss_pred HHHHHHHhcCCHHHHHHHH----------------------------HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 311 TLIKGFCVEGNLDEAYQLI----------------------------DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 362 (475)
.+.+..-...-+++|.++. +.-.+.+.- ...+|-.+.-+..+.+++..|.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 6655544444444444444 443332211 23455556666667777777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 363 LFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 363 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.|..-... .|| ...||.+-.+|.+.++-.+|...+++..+.+.. +-.+|...+....+.|.+++|++.+..+.+
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 77776643 555 356788888888888888888888887776633 345666666667777888888888777765
Q ss_pred cCC-CCChhhHHHHHHHHHh
Q 011905 442 KRI-WLQGPYVDKIVEHLKK 460 (475)
Q Consensus 442 ~~~-~~~~~~~~~l~~~~~~ 460 (475)
... ..|..+...++....+
T Consensus 616 ~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred hhhhcccchhhHHHHHHHHh
Confidence 422 2355555555555444
No 107
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=0.00011 Score=66.67 Aligned_cols=166 Identities=12% Similarity=0.078 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS--MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 292 (475)
+++++..++.+.+...+ +..+|+.-...+.+.|+ .++++.+++++.+.. +.+..+|+...-++...|+++++++
T Consensus 88 l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 88 LEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444444444443221 33333333222333332 134444444444432 2344445544444445555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CCHHHHH
Q 011905 293 ILDRMEALGCAPNRVTISTLIKGFCVE---GN----LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT----KRLKEAE 361 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~ 361 (475)
.++++.+.+.. |...|+.....+.+. |. .++......+++...+. +...|+.+...+... ++..+|.
T Consensus 164 ~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 164 YCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHH
Confidence 55555444322 233333332222222 11 12344444444443322 344455555555442 2234455
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011905 362 KLFSKMLASGVKPDGLACSVMIRELC 387 (475)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~li~~~~ 387 (475)
+++.+..+.+ ..+......|+..|+
T Consensus 242 ~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 242 SVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 5555544332 123344445555544
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=2.8e-05 Score=74.48 Aligned_cols=213 Identities=14% Similarity=0.059 Sum_probs=91.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011905 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.+...+...|-...|..+|+++. .|.-+|.+|...|+..+|..+..+..+. +||...|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 33444444555555555554432 2334444455555555555544444442 344444544444444444
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011905 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 328 (475)
-+++|.++.+..... +-..+.......+++.++.+.|+.-.+.+ +--..+|..+-.+..+.+++..|.+.
T Consensus 472 ~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 444444444433221 00111111122344455554444433221 11233344444444444555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|-..+-...+.|.+++|.+.+.++.+
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5444443221 23445555555555555555555555555443 22233333333334445555555555544443
No 109
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=2.4e-05 Score=68.52 Aligned_cols=330 Identities=12% Similarity=0.075 Sum_probs=146.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH-HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 170 (475)
.++.-...++....+.++-++...+-+.+.+. .+.--+|.. .|.+.. +++|+++|+.....+ |.-...|.-
T Consensus 119 k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~H-YQeAIdvYkrvL~dn--~ey~alNVy 190 (557)
T KOG3785|consen 119 KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMH-YQEAIDVYKRVLQDN--PEYIALNVY 190 (557)
T ss_pred CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHH-HHHHHHHHHHHHhcC--hhhhhhHHH
Confidence 44444444555555667766666665555432 122222333 344443 788888888877642 444444443
Q ss_pred H-HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH--------------HHHCC------
Q 011905 171 I-RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV--------------MKRHG------ 229 (475)
Q Consensus 171 l-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~--------------m~~~g------ 229 (475)
+ -+|.+..-++-+.++++-..+. ++.+....|.......+.=+-..|++-.+. +.+++
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 3 3455666677777776655543 122233333322222221111111111111 11110
Q ss_pred ------CCc-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC-------CHHHHH
Q 011905 230 ------CAA-----NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG-------MMKEAL 291 (475)
Q Consensus 230 ------~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~ 291 (475)
+-| -+..--.++--|.+.++..+|..+..++.. ..|-......+ .++..| ...-|.
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgv--v~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGV--VFAALGQETGSREHLKIAQ 343 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHH--HHHHhhhhcCcHHHHHHHH
Confidence 000 011122344456777888888877766543 12322222221 222222 234444
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 292 GILDRMEALGCAPNRV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
+.|+..-+.+..-|+. --..+..++.-..++++++-.++.+..--...|...| .+.++++..|.+.+|+++|-.....
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 5554444433322211 1122333334444555555555555443322222222 3555666666666666666555433
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 371 GVKPDGLACS-VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 ~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.++ |..+|. .|.++|.+.+.++.|+.++-.+.. |.........+...|.+.+.+--|-+.|+.+...
T Consensus 423 ~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 423 EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 222 233333 333455666666665444322221 1111122222334444555555555555555443
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=9.7e-06 Score=71.04 Aligned_cols=192 Identities=10% Similarity=-0.039 Sum_probs=112.1
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 011905 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR--VTI 309 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~ 309 (475)
.....+..+...+.+.|++++|...|+++......-+....++..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 355667777777888888888888888877642110111235566777788888888888888887764321111 133
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011905 310 STLIKGFCVE--------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 310 ~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 381 (475)
..+..++... |+.++|.+.++.+.+..... ...+..+... +..... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~----~~~~~~------~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRM----DYLRNR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHH----HHHHHH------HH--------HHHHH
Confidence 3444444433 56677777777776654321 1112111110 000000 00 00113
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+...+.+.|++++|...++.+.+.....+.....+..+..++...|++++|.++++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455777888888888888887763211123567778888888888888888887777654
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=5.4e-06 Score=72.66 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=26.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 279 QIFCGKGMMKEALGILDRMEALGC--APNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
..+.+.|++++|+..++...+... +.....+..+..++.+.|++++|...++.+..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555443311 11233444555555555555555555554443
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=1.6e-05 Score=67.04 Aligned_cols=159 Identities=9% Similarity=0.047 Sum_probs=107.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011905 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (475)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.+.. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3456777777765444322211 10 0112255667777777777766543 677788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011905 358 KEAEKLFSKMLASGVKPDGLACSVMIREL-CLGGQ--VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
++|...|++..+.. .-+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|+.
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d---P~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD---ANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888653 22456666666653 56666 488888888888875 2367788888888888888888888
Q ss_pred HHHHHHHcCCCCChhhHHHH
Q 011905 435 LARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 435 ~~~~m~~~~~~~~~~~~~~l 454 (475)
.++++++.. +|+..-...+
T Consensus 166 ~~~~aL~l~-~~~~~r~~~i 184 (198)
T PRK10370 166 LWQKVLDLN-SPRVNRTQLV 184 (198)
T ss_pred HHHHHHhhC-CCCccHHHHH
Confidence 888888876 5555544433
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=0.00011 Score=62.07 Aligned_cols=152 Identities=15% Similarity=0.120 Sum_probs=72.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011905 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
-...|++.|++++|++....... .+.... =...+.+..+.+-|.+.++.|.+.. +..|.+.|..++.+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~------lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~l 182 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGEN------LEAAAL--NVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKL 182 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccch------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHH
Confidence 33445556666666655554111 122222 2233445555566666666665532 444555555544432
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHH
Q 011905 320 ----GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-VLE 394 (475)
Q Consensus 320 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~ 394 (475)
+++.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++.+... .-++.+...++..-...|. .+-
T Consensus 183 a~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHH
Confidence 3455566666665442 23455555555555666666666666666655543 2233444444333333332 233
Q ss_pred HHHHHHHHHH
Q 011905 395 GFCLYEDIEK 404 (475)
Q Consensus 395 a~~~~~~~~~ 404 (475)
..+.+..++.
T Consensus 261 ~~r~l~QLk~ 270 (299)
T KOG3081|consen 261 TERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHh
Confidence 3344444444
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.58 E-value=0.0006 Score=63.45 Aligned_cols=405 Identities=12% Similarity=0.074 Sum_probs=200.0
Q ss_pred CCHHHHHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHH
Q 011905 57 LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136 (475)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 136 (475)
-+-+.+..+++.......+.+..++.... ..|+.++..+..-++...+.++++.+..+|..+...- .+...|..-|
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YEq~~--~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYEQLV--NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 35666777777764445566666766554 3455666777777888888899999999999988763 4466666655
Q ss_pred HHHHh-cCCHHH----HHHHHHhcc-cCCCCC-CHhhHHHHHHH---------HHhcCChhHHHHHHHHhccCCCCC---
Q 011905 137 NLCEK-ARLANE----AMWVLRKMP-EFDLRP-DTIIYNNVIRL---------FCEKGDMIAADELMKGMGLIDLYP--- 197 (475)
Q Consensus 137 ~~~~~-~~~~~~----A~~~~~~m~-~~~~~~-~~~~~~~ll~~---------~~~~g~~~~a~~~~~~m~~~~~~~--- 197 (475)
.--.+ .++... -.+.|+-.. +.|+.+ +...|+..+.- +..+.+++...+++.++...-+..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 53332 222222 233333322 234322 22344444433 334456667777787776522111
Q ss_pred ---ChhhHHHHHHHH-------HhcCCHHHHHHHHHHHHH--CCCCcCHH---------------HHHHHHHHHHhcC--
Q 011905 198 ---DIITYVSMIKGF-------CNAGRLEDACGLFKVMKR--HGCAANLV---------------AYSALLDGICRLG-- 248 (475)
Q Consensus 198 ---~~~~~~~li~~~-------~~~~~~~~a~~~~~~m~~--~g~~~~~~---------------~~~~ll~~~~~~g-- 248 (475)
|-..|..=|+.. -+..++..|.++++++.. .|...+.. .|..+|.-=-..+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 111222212111 123345566666666543 23211111 1222222111000
Q ss_pred ----C--hHHHHHHHHHHHhcCCCCCCcHHHH-HHH----HHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHH
Q 011905 249 ----S--MERALELLGEMEKEGGDCSPNVVTY-TSV----IQIFCGKGM-------MKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 249 ----~--~~~a~~~~~~~~~~~~~~~~~~~~~-~~l----i~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
. -....-++++.... .+..|++... ... -+.+...|+ .+++..+++.....-..-+..+|.
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred cccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111111111110 1111221110 000 111222232 344444554444322222333333
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 011905 311 TLIKGFCVEG---NLDEAYQLIDKVVAG-GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP-DGLACSVMIRE 385 (475)
Q Consensus 311 ~li~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~ 385 (475)
.+...--..- +.+....+++++... ...|+ -+|..+++.-.+..-++.|..+|.+..+.+..+ +....++++.-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 3332211111 244445555555443 23332 346666666666666777777777777766555 55566666665
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcC
Q 011905 386 LCLGGQVLEGFCLYEDIEKI-GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG--PYVDKIVEHLKKSG 462 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g 462 (475)
+| .++.+-|.++|+--.++ |- +...-...++-+...++-..|..+|++.+..+++++. .+|+.++..-..-|
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d----~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGD----SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 44 35666777777654433 21 2333455666666777777777777777776544433 46777777777777
Q ss_pred CHhHHhhccc
Q 011905 463 DEELITNLPK 472 (475)
Q Consensus 463 ~~~~a~~l~~ 472 (475)
+.+.+.++.+
T Consensus 487 dL~si~~lek 496 (656)
T KOG1914|consen 487 DLNSILKLEK 496 (656)
T ss_pred cHHHHHHHHH
Confidence 7777666543
No 115
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=0.00019 Score=66.67 Aligned_cols=359 Identities=13% Similarity=0.016 Sum_probs=227.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC-HhhHHHHHHHHHhcCChh
Q 011905 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-TIIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~ 181 (475)
.....|+++.|+..|.+..... +++...|..=..+|+..|++++|++=-.+..+. .|+ ...|+....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4456799999999999988876 558888888889999999999998876666654 344 567899999999999999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH---HHHHHHHHCC---CCcCHHHHHHHHHHHHhc--------
Q 011905 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC---GLFKVMKRHG---CAANLVAYSALLDGICRL-------- 247 (475)
Q Consensus 182 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~m~~~g---~~~~~~~~~~ll~~~~~~-------- 247 (475)
+|+.-|.+=++.. +.+...++.+..++.......... .++..+.... .......|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999877654 445566667776662110000000 0111110000 000111233333222111
Q ss_pred --CChHHHHHHHHHH-----HhcC-----CCCCC----------------------cHHHHHHHHHHHHhcCCHHHHHHH
Q 011905 248 --GSMERALELLGEM-----EKEG-----GDCSP----------------------NVVTYTSVIQIFCGKGMMKEALGI 293 (475)
Q Consensus 248 --g~~~~a~~~~~~~-----~~~~-----~~~~~----------------------~~~~~~~li~~~~~~g~~~~a~~~ 293 (475)
.++..+.-.+... ...+ .+..| -..-...+.++..+..+++.|++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 1111121111100 0000 00001 112255678888888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-------HHHHHHHhcCCHHHHHHHHHH
Q 011905 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS-------SLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 294 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~~A~~~~~~ 366 (475)
+....... -+..-++....+|...|++..+...-+..++.|... ..-|+ .+..+|.+.++++.|+..|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 98887764 455666777788899999888888777777665432 12233 234466677889999999988
Q ss_pred HHHCCCCCCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 367 MLASGVKPDGLACS-------------------------VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 367 m~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
.+.....|+..+-. .=-..+.+.|++..|...|.++++.. +.|...|....-
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~---P~Da~lYsNRAa 400 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD---PEDARLYSNRAA 400 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC---CchhHHHHHHHH
Confidence 77654444433211 11223556788999999999988876 358888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+|.+.|.+.+|++=.+..++.. ++....|..=..++.-..+++.|.+.++
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888888775 5555555555666666667777665544
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.57 E-value=0.00036 Score=61.17 Aligned_cols=296 Identities=11% Similarity=0.021 Sum_probs=207.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI---KGFCNAGRLEDACGLFKVMKRHGCAANLVAYS- 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~- 238 (475)
++.-.--+...+...|++..|+.-|....+ -|+..|.++. ..|...|+-..|+.=+.+..+. +||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 333444566677788999999999988875 3444454443 4677788888888888888776 56643221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH----------HH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVV----------TY--TSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
.-...+.+.|.++.|..=|+.+.+....-..... .| ...+..+...|+...|+.....+.+.. +.|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 1234678899999999999999885311001111 12 223445667899999999999998863 4577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----H-
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS----V- 381 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~- 381 (475)
..|..-..+|...|++..|+.=++...+..-. ++.++.-+-..+...|+.+.++...++-++. .||...+- .
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH
Confidence 88888889999999999999888877665443 4556667778888999999999999888854 56654321 1
Q ss_pred --HHH------HHHhcCCHHHHHHHHHHHHHcCCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 382 --MIR------ELCLGGQVLEGFCLYEDIEKIGFL-SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 382 --li~------~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
+.. .....+++.++.+-.+...+.... +......+..+-.++...|++.+|++...+.++.. +.|+.++-
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHH
Confidence 111 234457788888888777776433 33344556677778888999999999999998876 55677776
Q ss_pred HHHHHHHhcCCHhHHhh
Q 011905 453 KIVEHLKKSGDEELITN 469 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~ 469 (475)
.=..+|.-...++.|..
T Consensus 346 dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIH 362 (504)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 66677776666666543
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00016 Score=61.05 Aligned_cols=247 Identities=12% Similarity=0.102 Sum_probs=155.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 184 (475)
-..|++..++.......... -++..-..+.++|...|++... ...++... .|.......+.......++.+.-+
T Consensus 19 fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 33456655555444433321 3344444456677777765433 33343332 344444444444444455544443
Q ss_pred H-HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011905 185 E-LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 185 ~-~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
. +.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.+++|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3 34444443333333344444567889999999998887621 3444444456677888999999999999872
Q ss_pred CCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011905 264 GGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 339 (475)
.+..+.+.|..++.+ .+.+.+|+-+|++|.+. ..|+..+.+....++...|++++|..++++...++..
T Consensus 167 -----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 167 -----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred -----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 456667766666554 56789999999999875 5789999999999999999999999999999988765
Q ss_pred ChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 011905 340 SGGCYSSLVVELVRTKRL-KEAEKLFSKMLAS 370 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 370 (475)
+..+...++.+-...|.. +-..+.+.+++..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 455555555555555554 4455666777654
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=0.00011 Score=74.43 Aligned_cols=169 Identities=12% Similarity=0.080 Sum_probs=82.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 3445555666666666666666666644443 2222 2222222244444443333222 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
.......++..+..+...|...+ -+...+..+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|... +
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-h
Confidence 22223333333333333333322 233355556666666666666666666666532 34555666666666655 6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 336 (475)
.++|.+++.+.... +...+++..+.++|.++....
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC
Confidence 66666665554432 344445555556665555543
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.53 E-value=0.00057 Score=65.86 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=90.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011905 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392 (475)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 392 (475)
+.+......+.+|..+++.+..+... ..-|..+.+.|...|+++.|.++|.+. + .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccH
Confidence 44455667778888888877765433 234677778888888888888887654 2 245567778888888
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+.|.++-.+.... ......|-.-..-+-+.|++.+|.+++-. .| .|+ ..++.|.+.|..+...+++
T Consensus 808 ~da~kla~e~~~~----e~t~~~yiakaedldehgkf~eaeqlyit---i~-~p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP----EATISLYIAKAEDLDEHGKFAEAEQLYIT---IG-EPD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHhHHhHHhhcchhhhhheeEE---cc-Cch-----HHHHHHHhhCcchHHHHHH
Confidence 8888776665542 22455566666666677888888777533 23 333 4467788888888777765
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.51 E-value=5e-05 Score=64.06 Aligned_cols=158 Identities=17% Similarity=0.145 Sum_probs=91.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011905 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
..+-..+...|+-+....+........ .-|............+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334455555666666665555533221 2233344445666666666767766666665543 23566666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011905 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
|+.++|..-|.+..+.- .-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|..
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCchHHHHHHHHHHhhcCChHHHHh
Confidence 77766666666666542 1123445555555666666666666666666543 2245555666666666666666666
Q ss_pred HHHH
Q 011905 435 LARF 438 (475)
Q Consensus 435 ~~~~ 438 (475)
+...
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 5443
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.50 E-value=0.00011 Score=74.43 Aligned_cols=220 Identities=11% Similarity=0.038 Sum_probs=148.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 011905 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT-YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240 (475)
Q Consensus 162 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 240 (475)
.+...+..|+..+...+++++|.++.+..... .|+... |-.+...+...++...+.-+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35667889999999999999999999976654 354433 33333355555554433332 34
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011905 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 320 (475)
+.......++..+..+...+... .-+..++-.+..+|-+.|+.++|..+++++.+.. +-|....|.+...|...
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~----~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY----GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh----hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 44455555665555555556553 2455678888999999999999999999999887 55788899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------CCCCCHHHHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-------------------GVKPDGLACSV 381 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------~~~p~~~~~~~ 381 (475)
++++|.+++...+.. |...+++..+.++|.++... |..--..++-.
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~ 228 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLED 228 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHH
Confidence 999999999887664 34444555555555555543 21222233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+...|....+++++..+++.+.+... .|.....-++.+|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~---~n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDN---KNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCC---cchhhHHHHHHHHH
Confidence 45566667778888888888887652 25566666777765
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=5e-05 Score=64.09 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=81.3
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..+...|+-+....+....... .+.|....+..+....+.|++..|...|.+..... ++|..+|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3444455555555554443322 12344444555555566666666666666555433 555566666666666666666
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+|..-|.+..+.-.. +...++.+.-.|.-.|+.+.|..++......+ +.|..+-..+.......|++++|.++...
T Consensus 152 ~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 152 EARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 666666555554222 34445555555555566666666665555432 23444555555555555666665555443
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=0.00014 Score=72.73 Aligned_cols=183 Identities=9% Similarity=0.014 Sum_probs=135.6
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011905 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346 (475)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (475)
+.++..+-.|.......|..++|..+++...+. .|+ ......+...+.+.+++++|...++.....+.. +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 456888888899999999999999999998885 344 556677888889999999999999999887654 5677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
+..++.+.|++++|..+|++....+ .-+..++..+-.++...|+.++|...|+...+..- +....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~---~~~~~~~~~~------ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG---DGARKLTRRL------ 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC---cchHHHHHHH------
Confidence 8888999999999999999998742 23367888888888999999999999999887642 2345555443
Q ss_pred CCHHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCC
Q 011905 427 NHSVEAAKLARFMLKKR----IWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~----~~~~~~~~~~l~~~~~~~g~ 463 (475)
++...-..+++++.-.+ .+.........+.-+.+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (694)
T PRK15179 230 VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRN 270 (694)
T ss_pred HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCc
Confidence 23344455566655443 33344456666666655543
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.47 E-value=9.2e-06 Score=64.68 Aligned_cols=110 Identities=7% Similarity=-0.086 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+...|++++|...|+...... ..+...+..+..++...|++++|...|+...+.. +.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~---p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD---ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHHHH
Confidence 4456667778888888888888887653 2356777777778888888888888888888754 24677788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011905 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
.+.|++++|++.|+..++.. +.++..+.....++
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 88888888888888888776 55555554444443
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.43 E-value=7e-05 Score=63.10 Aligned_cols=119 Identities=9% Similarity=0.036 Sum_probs=74.6
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HhcCC--hHHH
Q 011905 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI-CRLGS--MERA 253 (475)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~-~~~g~--~~~a 253 (475)
.++.+++...+++....+ +.|...|..+...|...|++++|...|++..+... -+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555665566555544 55666677777777777777777777776666542 2555666666543 45555 3677
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+++++..+.+ +.+..++..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d---P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD---ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777776643 345566666666667777777777777776655
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=0.00047 Score=63.50 Aligned_cols=117 Identities=20% Similarity=0.166 Sum_probs=64.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 394 (475)
+...|++++|+..++.+++.-. -|...+....+.+.+.|+.++|.+.++++... .|+ ....-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3445666666666666555432 24444555555666666666666666666644 444 2333344455666666666
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
|.++++...... +.|...|..|..+|...|+..+|....-+
T Consensus 393 ai~~L~~~~~~~---p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 393 AIRILNRYLFND---PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHhhcC---CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 666666655543 23555666666666655555555444433
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.39 E-value=6.3e-05 Score=75.25 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=64.1
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
.++..+..|.....+.|..++|..+++...+.. +-+......+..++.+.+++++|+..+++..... +-+......+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 334455555555555555555555555554432 1123334444455555555555555555554432 22333344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555422 12344555555555555555555555555544
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.00096 Score=61.53 Aligned_cols=111 Identities=21% Similarity=0.165 Sum_probs=58.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc-HHHHHHHHHHHHhcCCHH
Q 011905 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN-VVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 288 (475)
...|+.++|+..++.+.+.- +-|+.........+.+.++.++|.+.++++... .|+ ...+-.+..+|.+.|++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL----DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhcCChH
Confidence 34555566666666555542 224444445555556666666666666655553 233 333444555555666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 326 (475)
+|+.+++..... .+.|+..|..|.++|...|+..++.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHH
Confidence 666665555443 2335555566666666555555443
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.33 E-value=4.4e-05 Score=60.80 Aligned_cols=92 Identities=10% Similarity=-0.094 Sum_probs=50.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011905 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34445555556666665555555443 3345555555555555666666666665555543 224555555555555566
Q ss_pred ChHHHHHHHHHHHh
Q 011905 249 SMERALELLGEMEK 262 (475)
Q Consensus 249 ~~~~a~~~~~~~~~ 262 (475)
++++|.+.|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655555
No 130
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.18 E-value=0.0017 Score=64.96 Aligned_cols=183 Identities=16% Similarity=0.105 Sum_probs=124.9
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 011905 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 187 (475)
++...+...|-...+.. +-=...|..|...|....+..+|.+.|++..+.+ ..+...+..+.+.|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34455554443333322 2224577888888888878889999999887765 347778888899999999999998884
Q ss_pred HHhccCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 011905 188 KGMGLIDLYPDIIT--YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265 (475)
Q Consensus 188 ~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (475)
-..-+.. +.-... |....-.|.+.++...|..-|+...+..+. |...|..+..+|.++|++..|.++|.+....
T Consensus 550 l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 550 LRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 3332211 111122 223344567788889999888888876533 7888999999999999999999999888773
Q ss_pred CCCCcHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 011905 266 DCSPNVVTYTS--VIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 266 ~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.|+. .|.. .....+..|.+.+|+..+.....
T Consensus 626 --rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 --RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3432 2222 22345678888888888877653
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0013 Score=55.34 Aligned_cols=190 Identities=15% Similarity=0.079 Sum_probs=116.6
Q ss_pred cCChHHHHHHHHHHHhcC-CC-CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCH
Q 011905 247 LGSMERALELLGEMEKEG-GD-CSPNVV-TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI-KGFCVEGNL 322 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~-~~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~~~~ 322 (475)
..+.++..+++.++.... .+ ..++.. .|..++-+....|+.+.|...++++...- |.+.-...+= -.+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 346777777777776531 11 223322 34455556667777777777777776652 3332222221 123346777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (475)
++|.++++.+++.+. .|..++-.=+...-..|+.-+|++-+.+..+. +..|...|.-+-..|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 788888887777663 24555655555556667766777777666654 3557777777777777888888887777777
Q ss_pred HHcCCCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 011905 403 EKIGFLSSVDSDIHSVLLLGLCRKN---HSVEAAKLARFMLKKR 443 (475)
Q Consensus 403 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~ 443 (475)
.-.. |.+...+..+.+.+.-.| +.+.|.++|.+.++..
T Consensus 181 ll~~---P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ---PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7643 235556666666554433 4555677777776655
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=8.3e-05 Score=58.68 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=39.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011905 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.+...+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|...++...+.+ +.+...+..+...|...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcC
Confidence 33344444444444444444443322 2233444444444444444444444444444332 223334444444444444
Q ss_pred ChHHHHHHHHHHHh
Q 011905 249 SMERALELLGEMEK 262 (475)
Q Consensus 249 ~~~~a~~~~~~~~~ 262 (475)
++++|.+.|+...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444444
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=4.8e-06 Score=47.98 Aligned_cols=33 Identities=39% Similarity=0.758 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 375 (475)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.15 E-value=0.00016 Score=57.10 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
.....+...+...|++++|.+.++.....+ +.+...+..+...+.+.|++++|..+++.....+ +.+...+..+..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~ 93 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD---PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCChHHHHHHHH
Confidence 334455555666666666666666665543 2355566666666666666666666666665532 334555555566
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011905 280 IFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+...|++++|...|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666665553
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=0.00024 Score=56.80 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011905 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR--VTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~ 324 (475)
.++...+...++.+.....+.+......-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555532111111222223344455555555555555555554322211 122234444555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (475)
|...++......+ ....+......|...|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555544322221 223344445555555555555555543
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.15 E-value=0.011 Score=58.75 Aligned_cols=226 Identities=9% Similarity=0.058 Sum_probs=133.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhH
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 182 (475)
...+++..|......+.+. .|+.. |..++. ...+.|..++|..+++.....+.. |..|...+-.+|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3456777777777776654 23322 223333 345778888888887776655433 77788888888888888888
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC----------ChHH
Q 011905 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG----------SMER 252 (475)
Q Consensus 183 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----------~~~~ 252 (475)
|..+|+..... .|+..-...+..+|.+.+++.+-.++--+|.+. .+-+.+.+=+++..+.+.- -..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 88888887643 466777777778888877776655544444442 2223333333444443321 1234
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL-DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331 (475)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 331 (475)
|.+.++.+.+.+ |.--+..-.-.....+-..|++++|.+++ ....+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 173 A~~m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 173 AEKMVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 555666666643 21112222222233445567788888777 3333332333444445666777777788887777777
Q ss_pred HHhCCCC
Q 011905 332 VVAGGSV 338 (475)
Q Consensus 332 ~~~~~~~ 338 (475)
+...|..
T Consensus 252 Ll~k~~D 258 (932)
T KOG2053|consen 252 LLEKGND 258 (932)
T ss_pred HHHhCCc
Confidence 7776643
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=0.00016 Score=57.77 Aligned_cols=126 Identities=17% Similarity=0.078 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG--LACSVMIR 384 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~ 384 (475)
|..++..+ ..++...+...++.+.+...... ....-.+...+...|++++|...|+........|+. .....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 36666666666666666533211 122333445666777777777777777765422221 12333455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
.+...|++++|+..++...... .....+....+.|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA----FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc----hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777775543322 23455666677777777777777777654
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.004 Score=52.58 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=10.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhc
Q 011905 169 NVIRLFCEKGDMIAADELMKGMG 191 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~m~ 191 (475)
.++-+....|+.+.|...++++.
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~ 79 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLR 79 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH
Confidence 33333444444444444444443
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=5.8e-06 Score=47.61 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777765
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=0.00026 Score=65.61 Aligned_cols=120 Identities=14% Similarity=0.061 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.|+..+...++++.|..+++++.+.+ |+ ....++..+...++..+|.+++.+.++.. +-+...+..-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444455555555555555443 21 12334444444455555555555554331 113333333333444555
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
+.+.|+.+.+++.+.. +.+..+|..|..+|.+.|++++|+-.++.
T Consensus 249 ~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 249 KYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 5555555555555532 12444555555555555555555544433
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=5.9e-06 Score=47.23 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 304 (475)
+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 142
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.09 E-value=0.0078 Score=60.49 Aligned_cols=161 Identities=12% Similarity=0.042 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCC-CCCCHhhHHHHHHHH
Q 011905 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLF 174 (475)
Q Consensus 96 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~ 174 (475)
.|..+...++...+...|...|+...+.. .-+......+.+.|++..+++.|..+.-..-+.. ...-...|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 34445555555556667777777766554 4567777788888999999998888843332211 001112233344455
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH--HHHHHHhcCChHH
Q 011905 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA--LLDGICRLGSMER 252 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~--ll~~~~~~g~~~~ 252 (475)
.+.++...|..-|+...+.. +.|...|..+..+|.+.|.+..|.++|.+.... .|+ .+|.. ....-+..|.+.+
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHH
Confidence 66667777777777666544 456667777777777777777777777666554 222 12221 1222344455555
Q ss_pred HHHHHHHHH
Q 011905 253 ALELLGEME 261 (475)
Q Consensus 253 a~~~~~~~~ 261 (475)
|...+..+.
T Consensus 649 ald~l~~ii 657 (1238)
T KOG1127|consen 649 ALDALGLII 657 (1238)
T ss_pred HHHHHHHHH
Confidence 555555443
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=0.00035 Score=64.73 Aligned_cols=122 Identities=14% Similarity=0.130 Sum_probs=74.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011905 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444555666777777777766543 33 33345666666666666777766666542 235555555566666777
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
+++.|+++.+++.... |-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777766632 3344567777777777777777776666554
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=7.7e-06 Score=46.75 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (475)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34555555555555555555555555544444
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=8e-05 Score=69.25 Aligned_cols=124 Identities=18% Similarity=0.089 Sum_probs=73.5
Q ss_pred CCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhh
Q 011905 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201 (475)
Q Consensus 124 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 201 (475)
+.+.+......+++.+....+++++..++-+.... ....-..|.+++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33455555555666666666666666666655442 1112233445666666666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666666555445555555555555544
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.03 E-value=0.00011 Score=68.28 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=79.3
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH
Q 011905 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272 (475)
Q Consensus 195 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (475)
.+.+......+++.+....+++.+..++-+.... ....-..|..++++.|.+.|..++++.++..=.. .|+-||..
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~--yGiF~D~~ 139 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ--YGIFPDNF 139 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh--cccCCChh
Confidence 3455666666677776666677777766666554 2222233445777777777777777777776666 55677777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
++|.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777766665555666665555555444
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=0.00037 Score=53.42 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
++..+...+.+.|++++|.+.|..+.+. .|+ ...+..+..++...|+++.|...++.+.......+....++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3455566666777777777777777654 222 2344556666777777777777777776643211112345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 419 LLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+..++.+.|++++|.+.++++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6667777777777777777777765
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.98 E-value=0.024 Score=56.55 Aligned_cols=227 Identities=11% Similarity=0.027 Sum_probs=117.3
Q ss_pred HHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhc
Q 011905 65 VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE--MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142 (475)
Q Consensus 65 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 142 (475)
+.+.+..++...|++-......+++-.+ |..+++ .+.+.|+.++|..+++.....+.. |..|...+-..|.+.
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH
Confidence 3334445566666666666555543322 333333 345677777777777776665533 777777777788888
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC--------
Q 011905 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR-------- 214 (475)
Q Consensus 143 ~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-------- 214 (475)
++.++|..+|++.... .|+......+..+|++.+++.+-.+.--+|.+ ..+.+...+=++++.......
T Consensus 91 ~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccc
Confidence 8888888888877664 35666666777777777766543333222222 112233333334433332110
Q ss_pred --HHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011905 215 --LEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALELLG-EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 215 --~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..-|.+.++.+.+.+ ..-+..-.......+...|++++|.+++. ...+. ..+.+...-+--+..+...+++.+.
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~--l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK--LTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhcChHHH
Confidence 123444444444433 11122222223344455666677766663 22221 1122222333344455555555555
Q ss_pred HHHHHHHHHcC
Q 011905 291 LGILDRMEALG 301 (475)
Q Consensus 291 ~~~~~~m~~~~ 301 (475)
.++-.++...|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 55555555543
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.89 E-value=0.00024 Score=51.79 Aligned_cols=68 Identities=13% Similarity=0.320 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011905 320 GNLDEAYQLIDKVVAGGS-VSSGGCYSSLVVELVRTK--------RLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387 (475)
Q Consensus 320 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 387 (475)
+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 444444444444433321 22344555566666566666666666665543
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.89 E-value=0.00025 Score=51.67 Aligned_cols=76 Identities=9% Similarity=0.151 Sum_probs=48.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011905 278 IQIFCGKGMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEG--------NLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4444555666666666666666666 666666666666655442 2335566677777777777777777777
Q ss_pred HHHHh
Q 011905 349 VELVR 353 (475)
Q Consensus 349 ~~~~~ 353 (475)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66543
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.0013 Score=50.44 Aligned_cols=62 Identities=11% Similarity=-0.034 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
..+..++.+.|+++.|.+.|+.+.....+.+....++..+..++.+.|+.++|...++++.+
T Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 43 YWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33444444444444444444444432111111122333333444444444444444444443
No 152
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.79 E-value=0.034 Score=52.35 Aligned_cols=188 Identities=11% Similarity=0.010 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFC---GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 326 (475)
-+++.++++..... -...+..+|..+..--- +....+....+++++...-..--..+|...|+...+..-+..|.
T Consensus 309 t~e~~~~yEr~I~~--l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 309 TDEAASIYERAIEG--LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 45566666665542 11223333433322111 11235666677777665433333457888999999999999999
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 327 QLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 327 ~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
.+|.+..+.+..+ ++..+++++..||. ++..-|.++|+--++. -+|. .-....+.-+...++-..++.+|++...
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 9999999988777 77888899987765 6778999999976654 2333 4445667778889999999999999999
Q ss_pred cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 405 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.++.++.....|..++.--..-|+...+.++-+++...
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 87666667789999999999999999999998877653
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.79 E-value=3.5e-05 Score=42.81 Aligned_cols=28 Identities=39% Similarity=0.861 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 154
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.76 E-value=0.0007 Score=55.92 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=61.6
Q ss_pred CcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 011905 269 PNVVTYTSVIQIFCG-----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343 (475)
Q Consensus 269 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 343 (475)
.+..+|..++..|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+-+ |.+- | ...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p-~n~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------P-RNF 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------c-ccH
Confidence 566667777776654 36677777777788888888888888888877654 2221 1 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
+.++...|- .+-+-|++++++|...|+-||..++..|++.+.+.+
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111111111 233556666666666666666666666666655444
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=4.4e-05 Score=42.42 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666655
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.74 E-value=0.00031 Score=57.93 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc----------------CChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK----------------GDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 143 ~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
|.++-....+..|.+.|+..|..+|+.|++.+=+. .+.+-|++++++|...|+-||..|+..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33444444444455555555555555555443321 23344556666666666666666666666
Q ss_pred HHHHhcCC
Q 011905 207 KGFCNAGR 214 (475)
Q Consensus 207 ~~~~~~~~ 214 (475)
+.+.+.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 66555444
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00082 Score=48.68 Aligned_cols=95 Identities=16% Similarity=0.027 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++|.+.++...+... .+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP---DNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---cchhHHHHHHHHH
Confidence 4445566666777777777777766542 12234555566666667777777777777666542 2335666666777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 011905 424 CRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~ 442 (475)
...|++++|.+.+....+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 7777777777777766543
No 158
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.69 E-value=0.0033 Score=47.73 Aligned_cols=109 Identities=19% Similarity=0.127 Sum_probs=66.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPD--GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+..++-..|+.++|+.+|++....|.... ...+-.+-.++...|++++|..++++.......++.+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677888888888888877765544 2344455566777788888888888777653211112233333445666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
..|+.++|++.+-..+... ...|..-+..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~----~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAET----LPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 7788888887776655432 225555555443
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.68 E-value=0.0073 Score=54.31 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
+..+...+.+.|++++|.++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344444555555555555554443
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.64 E-value=0.00091 Score=48.44 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 011905 237 YSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
+..+...+...|++++|...+...
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333344444444444444333
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.64 E-value=0.0043 Score=51.18 Aligned_cols=62 Identities=8% Similarity=0.003 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555666666666665554332221 23455555555555555555555555554
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.61 E-value=0.0048 Score=48.66 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
.-.+...+...|++++|.++|+.+...+ +-+..-|..|.-++-..|++++|+..|.......+ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344445556666666666666655433 23444455555566666666666666666666553 355566666666666
Q ss_pred cCChHHHHHHHHHHHh
Q 011905 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|+.+.|.+.|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665554
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.0031 Score=58.69 Aligned_cols=91 Identities=11% Similarity=-0.018 Sum_probs=53.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
..+...|++++|...|++.++.+.. +...|..+..+|...|++++|+..++++++.. ..+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3445556666666666666655432 34555566666666666666666666666542 123445555555666666666
Q ss_pred HHHHHHHHHHHcC
Q 011905 394 EGFCLYEDIEKIG 406 (475)
Q Consensus 394 ~a~~~~~~~~~~~ 406 (475)
+|...|++..+.+
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666543
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.60 E-value=0.0022 Score=52.76 Aligned_cols=119 Identities=11% Similarity=-0.040 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
..|..+...+...|++++|...|++.......+ ...++..+...+...|+.++|+..++...+.. +.....+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHH
Confidence 345555666666677777777777766442221 12356666666777777777777777766642 1234445555
Q ss_pred HHHHH-------hcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCC
Q 011905 420 LLGLC-------RKNHSVEAAKLARFMLKK---RIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 420 i~~~~-------~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~ 463 (475)
...+. ..|++++|...+++.... .+..++..+..+...+...|+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 55555 677777666666554322 223344334444444444444
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=0.00017 Score=51.41 Aligned_cols=81 Identities=21% Similarity=0.184 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011905 354 TKRLKEAEKLFSKMLASGVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
.|+++.|+.+++++.+.... ++...+-.+..++.+.|++++|..+++. .+.+. .+......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~---~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP---SNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH---CHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC---CCHHHHHHHHHHHHHhCCHHHH
Confidence 35566666666666554211 1223333355556666666666666655 22111 1223333445556666666666
Q ss_pred HHHHHH
Q 011905 433 AKLARF 438 (475)
Q Consensus 433 ~~~~~~ 438 (475)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666554
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0017 Score=58.11 Aligned_cols=130 Identities=14% Similarity=0.137 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG-FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
+|-.+++..-+.+..+.|..+|.+.++.+ ..+..+|...... +...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 44455555555555555555555554322 1222333322222 11234444455555555543 233455555555555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 245 CRLGSMERALELLGEMEKEGGDCSPN---VVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+.|+.+.|..+|++.... ++++ ...|..++..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566666666666655542 1111 135555555555666666666666555543
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.58 E-value=0.044 Score=47.85 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=31.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCh-hhH---HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDI-ITY---VSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~---~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
....+.+.|++++|.+.|+++.... |+. ... -.+..++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444455666666666666665532 222 111 23445556666666666666666654
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.57 E-value=0.013 Score=52.66 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=43.0
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhcC--CCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHH-HH
Q 011905 240 LLDGICRL-GSMERALELLGEMEKEG--GDC-SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA-----PNRV-TI 309 (475)
Q Consensus 240 ll~~~~~~-g~~~~a~~~~~~~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~-~~ 309 (475)
+...|-.. |++++|.+.|++....- .+. ..-...+..+...+.+.|++++|.++|++....... .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33445555 66666666666554310 000 001223444555566666666666666665543211 1111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011905 310 STLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~~~~~ 335 (475)
...+-++...||...|.+.+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22233444556666666666666543
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.55 E-value=0.062 Score=48.82 Aligned_cols=83 Identities=17% Similarity=0.041 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
.+..|.-+...|+...|.++-.+.. -|+...|-..+.+++..+++++..++... . + .+.-|..++.+|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k-K---sPIGyepFv~~~ 247 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K-K---SPIGYEPFVEAC 247 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C-C---CCCChHHHHHHH
Confidence 3444445555566665555555442 35556666666666666666655544321 1 1 113456666666
Q ss_pred HhcCCHHHHHHHHHH
Q 011905 424 CRKNHSVEAAKLARF 438 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~ 438 (475)
.+.|+..+|..++.+
T Consensus 248 ~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK 262 (319)
T ss_pred HHCCCHHHHHHHHHh
Confidence 666666666665555
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.53 E-value=0.004 Score=55.82 Aligned_cols=129 Identities=11% Similarity=0.110 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. ++.+...|...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 44555555555555555555555555332 1122333332222 12234444455555555543 2344455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 280 IFCGKGMMKEALGILDRMEALGCAPNR---VTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
.+...|+.+.|..+|++.... +.++. ..|...++.=.+.|+++.+.++.+.+.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555433 21111 2444444444444444444444444443
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.024 Score=51.48 Aligned_cols=51 Identities=12% Similarity=-0.035 Sum_probs=27.4
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHh
Q 011905 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 190 (475)
+.+..++.+|+..+....+.+. -+..-|..-...+...|++++|.--.+.-
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~ 109 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQS 109 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhh
Confidence 3444556666666666665542 23444555555555556666655544433
No 172
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.095 Score=50.99 Aligned_cols=203 Identities=12% Similarity=0.077 Sum_probs=127.4
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccC-CCCCCHh--------hHHHHHHHHHhcCChhHHHHHHHHhccCCCC
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF-DLRPDTI--------IYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~--------~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 196 (475)
.|.+..|..+.......-.++.|+..|-+.... |++.-.. .-..=+.+ --|++++|.+++-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 788999999988888888888998888877663 4321111 11111222 2478889999888876543
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH
Q 011905 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA----NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (475)
..|....+.||+-.+.++++. -|-.. -...++.+...+.....|++|.+.|......
T Consensus 765 -------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 346667778888877777653 11111 1346777888888888888888877654321
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (475)
...+.++.+..++++...+...+ +.+....-.+.+++.+.|.-++|.+.|-+. +. | .+.+..|.
T Consensus 826 --e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv 889 (1189)
T KOG2041|consen 826 --ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCV 889 (1189)
T ss_pred --HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHH
Confidence 12455666656665555544443 334555666777778888877777665332 21 1 23455667
Q ss_pred hcCCHHHHHHHHHHH
Q 011905 353 RTKRLKEAEKLFSKM 367 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m 367 (475)
..+++.+|.++-++.
T Consensus 890 ~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777776654
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.48 E-value=0.00041 Score=49.41 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=8.2
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 011905 240 LLDGICRLGSMERALELLGE 259 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~ 259 (475)
+..+|.+.|++++|.++++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444433
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0042 Score=51.05 Aligned_cols=64 Identities=14% Similarity=-0.030 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA--NLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...|..+...+...|++++|+..|+........+ ...++..+...|...|++++|++.+++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555556666666666666665442221 123566666666666777777776666665
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.47 E-value=0.012 Score=48.50 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHH
Confidence 344555555556666666666665554322211 2455566666666666666666666666532 22344455555
Q ss_pred HHHHhcCCHHH
Q 011905 279 QIFCGKGMMKE 289 (475)
Q Consensus 279 ~~~~~~g~~~~ 289 (475)
..+...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 55555555433
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.46 E-value=0.06 Score=47.04 Aligned_cols=58 Identities=7% Similarity=0.039 Sum_probs=34.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
+.+.|.+.|.+..|..-++.+.+.-.+.+........++.+|...|..++|.++...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4455666667766666666666653333334445555666666666666666655544
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0034 Score=54.46 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=39.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a 395 (475)
.+.+++.+|+..|.+.++.... |...|..=..+|.+.|.++.|++-.+..+.. .|. ..+|..|-.+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 3444555555555555543322 3333444444555555555555544444432 222 23444455555555555555
Q ss_pred HHHHHHHHH
Q 011905 396 FCLYEDIEK 404 (475)
Q Consensus 396 ~~~~~~~~~ 404 (475)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 555554444
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.40 E-value=0.0066 Score=56.49 Aligned_cols=91 Identities=13% Similarity=0.009 Sum_probs=58.7
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
...+...|+++.|++.|++..... +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556677777777777766544 3445566666666777777777777777766653 22555666666677777777
Q ss_pred HHHHHHHHHHHhc
Q 011905 251 ERALELLGEMEKE 263 (475)
Q Consensus 251 ~~a~~~~~~~~~~ 263 (475)
++|...|++..+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776663
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.39 E-value=0.017 Score=45.67 Aligned_cols=90 Identities=11% Similarity=-0.028 Sum_probs=43.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC
Q 011905 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427 (475)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 427 (475)
...+...|++++|.++|+.+.... .-+..-|-.|--++-..|++++|+..|........ .|...+-.+..++...|
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~---ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI---DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHcC
Confidence 333445555555555555554332 11223333344444445555555555555555431 24444555555555555
Q ss_pred CHHHHHHHHHHHHH
Q 011905 428 HSVEAAKLARFMLK 441 (475)
Q Consensus 428 ~~~~A~~~~~~m~~ 441 (475)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.15 Score=49.61 Aligned_cols=277 Identities=15% Similarity=0.098 Sum_probs=130.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 011905 136 FNLCEKARLANEAMWVLRKMPEF-DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 214 (475)
|....+.|++-...++++.--.. .-..-...|+.+...+.....|++|.+.+..-.. ....+.++.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHh
Confidence 44455555555555555432110 0011123455555555555555555555544321 1123444444444
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++-+.+.+.+ +-+....-.+..++.+.|.-++|.+.+-+... |. ..+..|...++|.+|.++-
T Consensus 838 f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~------pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 838 FGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL------PK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC------cH-----HHHHHHHHHHHHHHHHHHH
Confidence 44444333333 33455566677777888888877776654432 22 2345666677777777765
Q ss_pred HHHHHcCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCh----hhHHHH-HHHH
Q 011905 295 DRMEALGCAPNRVTI--------------STLIKGFCVEGNLDEAYQLIDKVVAG----GSVSSG----GCYSSL-VVEL 351 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~--------------~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~----~~~~~l-i~~~ 351 (475)
+...- |...|. ..-|..+.+.|..-+|-+++.+|.++ +.++-. ....++ +.-+
T Consensus 902 q~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h 977 (1189)
T KOG2041|consen 902 QRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENH 977 (1189)
T ss_pred Hhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 54321 122221 12234455666666666676666543 322210 011111 1111
Q ss_pred ----------HhcCCHHHHHHHHHHHHHC-------CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCC
Q 011905 352 ----------VRTKRLKEAEKLFSKMLAS-------GVKPDGL--ACSVMIRELCLGGQVLEGFCLYEDIEKI-GFLSSV 411 (475)
Q Consensus 352 ----------~~~g~~~~A~~~~~~m~~~-------~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 411 (475)
-+.|..++|..+++.-.-. +.--... .|..|.+--...|.++.|++.--.+.+. .+.|
T Consensus 978 ~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lp-- 1055 (1189)
T KOG2041|consen 978 RQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLP-- 1055 (1189)
T ss_pred HHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCC--
Confidence 1234455555444332210 0111112 2333333344556777776654444443 3444
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
....|+.+..+-|....+...-+.|-++....
T Consensus 1056 P~eiySllALaaca~raFGtCSKAfmkLe~~e 1087 (1189)
T KOG2041|consen 1056 PAEIYSLLALAACAVRAFGTCSKAFMKLEAFE 1087 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhh
Confidence 46677777666666555555555555555443
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.35 E-value=0.054 Score=45.98 Aligned_cols=84 Identities=7% Similarity=-0.010 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHH
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR--IWLQGPYVDKIVEH 457 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~ 457 (475)
..++.-|=...-..+|...+..+.+.- ...--.+..-|.+.|.+..|..-++.+++.= .+........++.+
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~l------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNRL------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHHH------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 334444444555556655555554421 0111235667888888888888888888762 12222345677888
Q ss_pred HHhcCCHhHHhh
Q 011905 458 LKKSGDEELITN 469 (475)
Q Consensus 458 ~~~~g~~~~a~~ 469 (475)
+.+.|..+.+..
T Consensus 188 y~~l~~~~~a~~ 199 (203)
T PF13525_consen 188 YYKLGLKQAADT 199 (203)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHHhCChHHHHH
Confidence 888888776543
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.0014 Score=43.84 Aligned_cols=57 Identities=19% Similarity=0.107 Sum_probs=37.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..+...|++++|...|+++.+.. +.+...+..+..++...|++++|..+|+++++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45566677777777777777654 2366667777777777777777777777776554
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.29 E-value=0.025 Score=55.18 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
..|.++.......|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44555544444556666666666666644 345555666666666666666666666666554
No 184
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.28 E-value=0.088 Score=44.70 Aligned_cols=51 Identities=8% Similarity=-0.036 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
+..-|.+.|.+..|..-++.+.+.-...+........++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344566667777777666666665322111233445566666666666543
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.25 E-value=0.039 Score=41.91 Aligned_cols=55 Identities=27% Similarity=0.310 Sum_probs=27.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
++-..|+.++|+.+|++....|.... ...+-.+...|...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555544322 22333444555555555555555555554
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.033 Score=48.74 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=81.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCCchhhH
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG---GQVLEGFCLYEDIEKIGFLSSVDSDIH 416 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (475)
|...|..|...|...|+.+.|...|.+..+.. .++...+..+..++... ....++..+++++...+ +.|+.+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D---~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD---PANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC---CccHHHH
Confidence 67789999999999999999999999988642 23445555555554332 35678889999999875 3478888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011905 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
..|...+...|++.+|...|+.|++.. +++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL-PADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-CCCCc
Confidence 888889999999999999999999887 44443
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.23 E-value=0.042 Score=53.64 Aligned_cols=138 Identities=10% Similarity=0.032 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 011905 301 GCAPNRVTISTLIKGFCVE-----GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT--------KRLKEAEKLFSKM 367 (475)
Q Consensus 301 ~~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m 367 (475)
+.+.+...|...+++.... ++.+.|..+|++.++.+.. ....|..+..++... .+...+.+...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3456677777777765432 2366888888888886543 234444444333322 1233444444443
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 368 LAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 368 ~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
... ....+...|..+.-.....|++++|...++++.+.+ | +...|..+...+...|+.++|.+.+++....+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--M--SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 123455677777666667899999999999999976 3 67889999999999999999999999998876
No 188
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.21 E-value=0.16 Score=46.09 Aligned_cols=283 Identities=13% Similarity=0.052 Sum_probs=176.5
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH--HhcCChhHHHHHHHHhccCCCCCChhh--HHHHHHHHHhcCCHHH
Q 011905 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF--CEKGDMIAADELMKGMGLIDLYPDIIT--YVSMIKGFCNAGRLED 217 (475)
Q Consensus 142 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~ 217 (475)
.|+-..|.++-.+-.+. +..|..-.-.|+.+- .-.|+++.|.+-|+.|.. .|.... ...|.-..-+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 46666666665544321 223555555555443 347999999999999975 232221 2233333456788888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHH--HHHHHHHHHh---cCCHHHHHH
Q 011905 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT--YTSVIQIFCG---KGMMKEALG 292 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~---~g~~~~a~~ 292 (475)
|.+.-+.....-. --...+...+...|..|+|+.|+++++.-.+. .-+.+++.- -..|+.+-.. .-+...|.+
T Consensus 173 Ar~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~-~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 173 ARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAA-KVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 8888887766532 24567888999999999999999999877653 223344322 2223322211 224555555
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 011905 293 ILDRMEALGCAPNRV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA-S 370 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~ 370 (475)
.-.+..+ +.||.. .-..-..++.+.|++.++-.+++.+-+....|+.. .+-.+.+.|+ .+..-+++..+ .
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHH
Confidence 5444433 445532 22344577889999999999999999987776432 2222344454 44444444433 2
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH-hcCCHHHHHHHHHHHHHc
Q 011905 371 GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC-RKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~ 442 (475)
.++|| ..+...+..+-...|++..|+.--+...+.. |....|-.|.+.-. ..|+-.++..++-+..+.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~----pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA----PRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC----chhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 34555 4566667778888999999888777776642 36677777776654 459999999988887765
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.17 E-value=0.018 Score=50.76 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
|...+..+.+.|++++|...|+.+++. .|+. ..+-.+..+|...|++++|...|+.+.+.....+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444443334456666666666666544 2332 2444555556666666666666666665432111223344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 011905 420 LLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
...+...|++++|.+++++.++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555666666666666666655
No 190
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.17 E-value=0.026 Score=45.01 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVD 452 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 452 (475)
....++..+...|++++|..+.+.+.... +.+...|..++.+|...|+..+|.+.|+++.. .|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34556667778889999999998888875 34788889999999999999999988877753 48888887655
Q ss_pred HH
Q 011905 453 KI 454 (475)
Q Consensus 453 ~l 454 (475)
..
T Consensus 141 l~ 142 (146)
T PF03704_consen 141 LY 142 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.11 E-value=0.0026 Score=43.04 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=32.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..|++++|.++|+++.+.. +.+...+..+..+|.+.|++++|.++++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566666666666666653 2255556666666666666666666666666554
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.09 E-value=0.0022 Score=43.33 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 319 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
.|++++|.++|+.+...... +...+..+..+|.+.|++++|.++++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444443322 33334444444444444444444444444
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.16 Score=43.55 Aligned_cols=132 Identities=10% Similarity=0.003 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH-----H
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA-----L 240 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-----l 240 (475)
+-+.++..+...|.+.-...++.+.++...+.+......|++.-.+.||.+.|...|++..+..-..|..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34455556666666666677777766655445555666666666777777777777776554322233333322 2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
...|.-.+++.+|...++++...+ +.|...-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D---~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD---PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC---CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233445566666666666666543 234444444444444456666666666666654
No 194
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.0099 Score=51.67 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=64.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
+.+.+++.+|+..|.+..+.. +-|.+.|..-..+|++.|.++.|++-.+..+..+.. -..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 455667777777777766652 235556666667777777777777766666664432 245677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~ 385 (475)
++.|++.++ +.|+..+|..=+..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 777777663 36666666554443
No 195
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.06 E-value=0.23 Score=45.16 Aligned_cols=110 Identities=16% Similarity=0.097 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
.+.+..|.-+...|+...|.++-.+. -.|+...|..-+.+|+..+++++-.++... +-.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 34555566677788888777776554 246788888899999999999887765432 12336788888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
.+.|+..+|..+...+ + +..-+..|.+.|++.+|.+...+
T Consensus 248 ~~~~~~~eA~~yI~k~------~------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI------P------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC------C------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 8999988888877661 1 24566778888888888776433
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.39 Score=47.41 Aligned_cols=319 Identities=15% Similarity=0.084 Sum_probs=178.3
Q ss_pred HhcCCccCHHhHHH-----HHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh--hHHHH-HHHHhcc
Q 011905 121 KEEGCVVSVKMMKV-----IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM--IAADE-LMKGMGL 192 (475)
Q Consensus 121 ~~~~~~~~~~~~~~-----li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--~~a~~-~~~~m~~ 192 (475)
..-|++.+..-|.. +|+-+...+.+..|.++-+.+...-.. ....|.....-+.+..+. +.+.+ +-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34677888777765 466777788899999998887642111 145666666666665322 22333 3333332
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 011905 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA----ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268 (475)
Q Consensus 193 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 268 (475)
.. -+...|..+.+-....|+.+-|..+++.=...+-. .+..-+...+.-+.+.|+.+-...++-.+..+
T Consensus 503 -~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~----- 575 (829)
T KOG2280|consen 503 -KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK----- 575 (829)
T ss_pred -cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH-----
Confidence 12 34456777777777889999888887643222211 11122344555566677777666666655542
Q ss_pred CcHHHHHHHH----------HHHHhc------------CCHHHHHHHHH--HHH----HcCCCCCHHHHHHHHHHHHhcC
Q 011905 269 PNVVTYTSVI----------QIFCGK------------GMMKEALGILD--RME----ALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 269 ~~~~~~~~li----------~~~~~~------------g~~~~a~~~~~--~m~----~~~~~p~~~~~~~li~~~~~~~ 320 (475)
.+...+...+ .-+++. ++-.++..-|. ... ..|..|+ ......++.+..
T Consensus 576 ~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk 652 (829)
T KOG2280|consen 576 LNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSK 652 (829)
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhh
Confidence 1111111111 111111 11111111111 000 0122222 223333444433
Q ss_pred CHHH----------HHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011905 321 NLDE----------AYQLIDKVVA-GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389 (475)
Q Consensus 321 ~~~~----------a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 389 (475)
...- -+++.+.+.. .+..-...+.+--+..+...|+..+|.++-.+.+ -||-..|-.-+.+++..
T Consensus 653 ~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 653 EKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhh
Confidence 3111 1222222221 1222233345666677788899999999888775 68888888888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhh
Q 011905 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
+++++-+++-+..+. +.-|...+.+|.+.|+.+||.+++-+.- +.+ -...+|.+.|++.+|.+
T Consensus 729 ~kweeLekfAkskks--------PIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 729 KKWEELEKFAKSKKS--------PIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhHHHHHHHHhccCC--------CCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHH
Confidence 999886655443321 2458888999999999999999876642 111 45667777777777765
Q ss_pred cc
Q 011905 470 LP 471 (475)
Q Consensus 470 l~ 471 (475)
+.
T Consensus 792 ~A 793 (829)
T KOG2280|consen 792 LA 793 (829)
T ss_pred HH
Confidence 53
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.01 E-value=0.13 Score=41.55 Aligned_cols=127 Identities=12% Similarity=0.044 Sum_probs=58.8
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CCChhhHHH
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDIITYVS 204 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ 204 (475)
.|++.---.|..+..+.|+..+|...|++...--+..|....-.+.++....+++..|...++++.+... ..+..+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444444555555555555555555554433334444445555555555555555555555543220 011223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
+.+.+...|....|+..|+..... -|+...-......+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 445555555555555555555443 233333333334444455444443
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.01 E-value=0.0048 Score=41.82 Aligned_cols=64 Identities=16% Similarity=0.022 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 011905 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKK 442 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~ 442 (475)
...|..+...+...|++++|+..|++..+.+ +.+...|..+..++.+.| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3455666666667777777777777777654 235666667777777776 577777777766654
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.98 E-value=0.017 Score=52.39 Aligned_cols=134 Identities=13% Similarity=0.051 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHH
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVA----GGS-VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA----SG-VKPDGL 377 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~ 377 (475)
.|..|-..|.-.|+++.|....+.-+. -|- ......+..|..++.-.|+++.|.+.|+.-.. .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 345555556666888888877654332 121 11235677788888888999988888876542 22 123345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEK----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+.-+|-..|.-..++++|+.++.+-.. .+-. .-....+..|..+|...|..+.|+.+....+..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr-iGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR-IGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 566677777777788888877765332 1100 014567778888888889999988877666543
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.97 E-value=0.026 Score=49.79 Aligned_cols=99 Identities=16% Similarity=0.040 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
|...+..+.+.|++++|...|+.+.+.-.... ...+-.+...|...|++++|...|..+.....+.+.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666655421110 2344555566666666666666666665432111122333333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011905 280 IFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+...|+.++|..+|+.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555556666666666555543
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.96 E-value=0.0046 Score=41.32 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=21.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
+.+.|++++|...|+.+++.... +...+..+..++...|++++|...|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444443311 33334444444444444444444444443
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.92 E-value=0.19 Score=46.32 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGG-DCSPNVVTYTSVIQIFCG---KGMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
..+...++-.|-...+++...++++.+..... .+......-....-++-+ .|+.++|++++..+......+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 33444556668888888888888888877310 011122222233445555 78888888888876655566777777
Q ss_pred HHHHHHHH
Q 011905 310 STLIKGFC 317 (475)
Q Consensus 310 ~~li~~~~ 317 (475)
..+.+.|-
T Consensus 221 gL~GRIyK 228 (374)
T PF13281_consen 221 GLLGRIYK 228 (374)
T ss_pred HHHHHHHH
Confidence 77666553
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.88 E-value=0.17 Score=40.89 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=70.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHH
Q 011905 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSL 347 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 347 (475)
|++..--.+..++...|+..+|...|++...--..-|....-.+.++....++...|...++.+.+....- +....-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 55555555566666666666666666665543334455555566666666666666666666665543100 12223445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401 (475)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (475)
...|...|++.+|...|+..... .|+...-...-..+.+.|+.+++..-+.+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 55666666666666666666644 44444333333344556655555443333
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.25 Score=42.36 Aligned_cols=131 Identities=13% Similarity=0.058 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-----
Q 011905 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV----- 348 (475)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----- 348 (475)
.+.++..+.-.|.+.-..+++.+..+...+.++.....|.+.-.+.||.+.|...|+...+..-..+..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344444455555555555566555555444455555555555556666666666666554433233333233222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
..|.-.+++..|...+.+....+ .-|....|.-.-+....|+..+|.+..+.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22333445555555555544332 112223332222233345555555555555554
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.78 E-value=0.011 Score=40.04 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG-MMKEALGILDRME 298 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 298 (475)
.+|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...| ++++|++.++...
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444444444444444422 223444444444444444 3444444444433
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.70 E-value=0.015 Score=39.89 Aligned_cols=57 Identities=12% Similarity=-0.022 Sum_probs=40.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|.+.++..++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45667777777777777777764 2356667777777777777777777777777665
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.17 Score=44.41 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHH
Q 011905 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG---NLDEAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
-|...|-.|..+|...|+.+.|..-|....+.. .++...+..+..++.... +-.++..+|+++++.+.. +..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 445555555555555555555555555544431 223333333333333221 233455555555554432 444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4555555555555555555555543
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.67 E-value=0.019 Score=52.06 Aligned_cols=130 Identities=12% Similarity=-0.025 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCCc
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKML----ASGVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIE----KIGFLSSVD 412 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 412 (475)
.+|..|...|.-.|+++.|+..-+.-+ +.|-+ .....+..|-.++.-.|+++.|.+.|+... +.|-. .+.
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r-~vE 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR-TVE 274 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch-hHH
Confidence 457777777888899999987655432 22322 223567778888888999999999888654 33432 234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK-----RIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
......|...|.-..++++|+.++++-+.. ..--....+.++..++...|..+.|..++.
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455566788888888999999988765432 112345678889999999999999876653
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.64 E-value=0.018 Score=46.01 Aligned_cols=70 Identities=26% Similarity=0.375 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME-----ALGCAPNRVT 308 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 308 (475)
+...++..+...|++++|..+...+.... |.+...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44556666677777777777777777643 4566777777777777777777777776654 3477776654
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.61 E-value=0.04 Score=42.31 Aligned_cols=53 Identities=9% Similarity=0.014 Sum_probs=35.4
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
...|+..+..+++.+|+..|++..|+++++...+. .+++-+..+|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence 34567777777777777777777777777777665 346666666766666443
No 211
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.59 E-value=0.21 Score=37.90 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
..+..+...|+-+.-.+++.++.+.+ ++++...-.+..||.+.|+..++.+++.++-+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444445555555555555444322 3444444445555555555555555555555544
No 212
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.41 E-value=0.079 Score=40.69 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHH
Q 011905 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG-GSVSSGGCYSSLVVE 350 (475)
Q Consensus 301 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~ 350 (475)
...|+..+..+++.+|+..+++..|.++++...+. ++..+..+|..|++-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455555555555555555555555555544432 233334445444443
No 213
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.37 E-value=0.2 Score=47.87 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011905 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 173 (475)
....+.+++.|...|.++.|+++..+-. .-.....+.|+++.|.++-+.. .+...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 3446666777777777777766644321 1245566677777776665544 255577777777
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011905 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
..+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 7777777777777766543 44566666666776666666666655541 33344444445666666
Q ss_pred HHHHHHH
Q 011905 254 LELLGEM 260 (475)
Q Consensus 254 ~~~~~~~ 260 (475)
.+++.+.
T Consensus 422 v~lL~~~ 428 (443)
T PF04053_consen 422 VDLLIET 428 (443)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6655443
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.36 E-value=0.68 Score=45.00 Aligned_cols=89 Identities=21% Similarity=0.221 Sum_probs=43.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
+-+...+.-|-++|..|-+. ..+++.....+++++|..+-+...+. .|| .|..-.+-++...++++|
T Consensus 757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHHhhhhhhHHHH
Confidence 33444555555565555421 23445555666666666655544321 121 133333444444455444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
.+ +|.++|+-.+|.++++++..
T Consensus 824 qk----------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 824 QK----------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HH----------------------HHHHhcchHHHHHHHHHhhh
Confidence 44 44555666666666666554
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.34 E-value=0.014 Score=40.64 Aligned_cols=64 Identities=20% Similarity=0.051 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
+++.+...|...|++++|+..+++..+. |-..+.-..++..+..++...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555666666666666555532 111000144566666666667777777776666543
No 216
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.32 E-value=0.61 Score=40.16 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=76.9
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----
Q 011905 282 CGKGMMKEALGILDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT----- 354 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 354 (475)
.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.++++.|...+++.+...+.....-|..-|.+++.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 45566666666666665431 11123444555556666666666666666665543322222244444443321
Q ss_pred --CCHHH---HHHHHHHHHHC----CCCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 011905 355 --KRLKE---AEKLFSKMLAS----GVKPDGLAC------------SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413 (475)
Q Consensus 355 --g~~~~---A~~~~~~m~~~----~~~p~~~~~------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 413 (475)
.+... |..-|++.+.. ...||...- ..+.+-|.+.|.+..|..-+++|.+.-...+...
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 22222 33333333332 112222211 1223345666777777777777776522211233
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
..+-.+..+|...|-.++|.+.-.-
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHH
Confidence 4455566667777777776665433
No 217
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.37 Score=40.93 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=83.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhh
Q 011905 87 QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 166 (475)
.+++.--...|......+...++++++...+....+ +..-+..-|. ....++.|.-+.++|.+. +--+..
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl 93 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDL 93 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHH
Confidence 344545566788888888889999999887776543 1122222221 123345666666666552 122345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CC--CCcCHHHHHHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR---HG--CAANLVAYSALL 241 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g--~~~~~~~~~~ll 241 (475)
|+.....|..+|.++.|-..+++.-+ ..+..++++|+++|++... .+ ...-...+..+-
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 66677788888888887777766532 1133455666666665432 11 011123344555
Q ss_pred HHHHhcCChHHHHHHHH
Q 011905 242 DGICRLGSMERALELLG 258 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~ 258 (475)
+.+.+...+++|-..+.
T Consensus 158 r~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFL 174 (308)
T ss_pred hHhhhhHHhhHHHHHHH
Confidence 56666666666655544
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.26 E-value=0.041 Score=37.60 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=24.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
|.+.+++++|.++++.++..++. +...+.....++.+.|++++|.+.++...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444444444444444322 333344444444444444444444444443
No 219
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.09 E-value=1.2 Score=41.45 Aligned_cols=85 Identities=4% Similarity=-0.048 Sum_probs=65.8
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 205 (475)
+-|..+|-.||.-+...+..++..+++++|..- .+--...|..-+.+=...+++.....+|.+..... .+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence 678899999999999999999999999999862 23344577777877777789999999999887654 456667666
Q ss_pred HHHHHhcC
Q 011905 206 IKGFCNAG 213 (475)
Q Consensus 206 i~~~~~~~ 213 (475)
+.--.+.+
T Consensus 116 l~YIRr~n 123 (660)
T COG5107 116 LEYIRRVN 123 (660)
T ss_pred HHHHHhhC
Confidence 66544433
No 220
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.08 E-value=0.28 Score=46.89 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFK 223 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~ 223 (475)
...|..|.....+.|+++-|++.|.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444444444444444443
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.07 E-value=0.53 Score=37.13 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011905 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
.++..+.+.+.......+++.+...+. .+...++.++..|++.+ ..+..+.+.. . .+..-...++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 455555555666666666666655542 44555566666665442 2222233321 0 11112333555555555
Q ss_pred CHHHHHHHHHHH
Q 011905 356 RLKEAEKLFSKM 367 (475)
Q Consensus 356 ~~~~A~~~~~~m 367 (475)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555544
No 222
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.96 E-value=1.4 Score=41.11 Aligned_cols=194 Identities=9% Similarity=0.060 Sum_probs=97.1
Q ss_pred HHhcCChhHHHHHHHHHHhc--CCcc-----------CHHh-HHHHHHHHHhcCCHHHHHHHHHhcccC----CCCCCHh
Q 011905 104 SRIKQNPSIIIDVVEAYKEE--GCVV-----------SVKM-MKVIFNLCEKARLANEAMWVLRKMPEF----DLRPDTI 165 (475)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~--~~~~-----------~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~ 165 (475)
.-+.+.++.|.+.+...... +-.+ +... =+..++.+...|++.++..++++|... ...-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34567788888877766543 2221 1222 234556788899999999988887653 3447888
Q ss_pred hHHHHHHHHHhcC--------C-------hhHHHHHHHHhccC------CCCCChhhHHHHHHHHHhc--CCHHHHHHHH
Q 011905 166 IYNNVIRLFCEKG--------D-------MIAADELMKGMGLI------DLYPDIITYVSMIKGFCNA--GRLEDACGLF 222 (475)
Q Consensus 166 ~~~~ll~~~~~~g--------~-------~~~a~~~~~~m~~~------~~~~~~~~~~~li~~~~~~--~~~~~a~~~~ 222 (475)
+|+.++-.+++.= . ++.+.-...+|... .+.|.......++....-. ....--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 8988666655431 1 12222222233211 1223333333333322211 1122223333
Q ss_pred HHHHHCCCCcCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 223 KVMKRHGCAANLVA-YSALLDGICRLGSMERALELLGEMEKEGG--DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 223 ~~m~~~g~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
+.....-+.|+-.. ...+...+.+ +.+++..+.+.+..... -...-+.++..++....+.++..+|-+.+.-+..
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33333334454332 2223333333 45555555544433100 0011234566777777777777777777766654
No 223
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.96 E-value=0.076 Score=45.82 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=30.1
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 011905 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL-EDACGLFKVMKR 227 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 227 (475)
+-+++++++|...|+-||-.+-..|++++.+.+-. .+..++.-.|.+
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 34677777777777777777777777777766653 344444444443
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.93 E-value=1.4 Score=40.79 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCC---CCCCHhhHHHHHHHHHh---cCChhHHHHHHHHhccCCCCCChhhHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFD---LRPDTIIYNNVIRLFCE---KGDMIAADELMKGMGLIDLYPDIITYVS 204 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 204 (475)
+...++-+|....+++..+++.+.+.... +.-+...-....-++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33344446777777777777777776531 11122222233344455 6777777777777444444566667666
Q ss_pred HHHHH
Q 011905 205 MIKGF 209 (475)
Q Consensus 205 li~~~ 209 (475)
+.+.|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66554
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.90 E-value=0.39 Score=46.57 Aligned_cols=196 Identities=15% Similarity=0.138 Sum_probs=103.2
Q ss_pred HHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhc--
Q 011905 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG-- 191 (475)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-- 191 (475)
+.-+++++++|-.|+... +...|+-.|.+.+|.++|.+--. . |..+..|.....++.|.+++..-.
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~---e------nRAlEmyTDlRMFD~aQE~~~~g~~~ 687 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGH---E------NRALEMYTDLRMFDYAQEFLGSGDPK 687 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCc---h------hhHHHHHHHHHHHHHHHHHhhcCChH
Confidence 334566777887777654 34456667778888888865422 1 223334444444444444332110
Q ss_pred -------c-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH------HHHCCC---CcCHHHHHHHHHHHHhcCChHHHH
Q 011905 192 -------L-IDLYPDIITYVSMIKGFCNAGRLEDACGLFKV------MKRHGC---AANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 192 -------~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~------m~~~g~---~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
+ ....-+..-=.+....+...|+.++|..+.-+ +.+.+- ..+..+...+..-+.+...+.-|-
T Consensus 688 eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 688 EKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 0 00000111111233444455666666554321 111111 124455555666666777888899
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-----------HHHHHHHHHhcCCHH
Q 011905 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT-----------ISTLIKGFCVEGNLD 323 (475)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------~~~li~~~~~~~~~~ 323 (475)
++|.+|-.. ..+++.....++|++|+.+-+...+. .||... |...-.+|-+.|+-.
T Consensus 768 eIF~k~gD~-----------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~ 834 (1081)
T KOG1538|consen 768 EIFLKMGDL-----------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQR 834 (1081)
T ss_pred HHHHHhccH-----------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchH
Confidence 999888552 34667778889999999998876653 344321 122223455555555
Q ss_pred HHHHHHHHHHh
Q 011905 324 EAYQLIDKVVA 334 (475)
Q Consensus 324 ~a~~~~~~~~~ 334 (475)
+|.++++++..
T Consensus 835 EA~~vLeQLtn 845 (1081)
T KOG1538|consen 835 EAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHhhh
Confidence 55555555543
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.81 E-value=0.042 Score=38.22 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEG--GD-CSPN-VVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+|+.+...|...|++++|++.|++..+.. .+ -.|+ ..++..+..++...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555444310 00 0011 23344444444555555555555444
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.25 Score=42.79 Aligned_cols=99 Identities=17% Similarity=0.111 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVK--PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
.|+.-+..| +.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.+.....+.-...+-.+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444433 455566666666666654110 01223444556666666666666666666654332222345555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 011905 421 LGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+..+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666666666666666666655
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.80 E-value=0.69 Score=44.92 Aligned_cols=163 Identities=15% Similarity=0.068 Sum_probs=105.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCccCH------HhHHHHHHHHH----hcCCHHHHHHHHHhcccCCCCCCHhh
Q 011905 97 YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV------KMMKVIFNLCE----KARLANEAMWVLRKMPEFDLRPDTII 166 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~----~~~~~~~A~~~~~~m~~~~~~~~~~~ 166 (475)
+..+++.++-.||-+..++++....+.+-.-.+ -.|..++..+. .....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 557888888888888888888876653322122 23333333322 245678899999998875 366655
Q ss_pred HHH-HHHHHHhcCChhHHHHHHHHhccCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH-
Q 011905 167 YNN-VIRLFCEKGDMIAADELMKGMGLIDL---YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL- 241 (475)
Q Consensus 167 ~~~-ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll- 241 (475)
|.. -.+.+...|++++|++.|++...... +.....+--+.-.+.-.++|++|...|..+.+..-- +..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 543 34566678999999999997654211 122334445666777889999999999999875321 333343332
Q ss_pred HHHHhcCCh-------HHHHHHHHHHHh
Q 011905 242 DGICRLGSM-------ERALELLGEMEK 262 (475)
Q Consensus 242 ~~~~~~g~~-------~~a~~~~~~~~~ 262 (475)
.++...|+. ++|.++|.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 334456666 888999988765
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=95.71 E-value=0.059 Score=42.91 Aligned_cols=92 Identities=14% Similarity=-0.035 Sum_probs=71.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
..--+...|++++|..+|.-+.-.+. -+..-+..|..++-..+++++|...|......+.. |...+-....+|...
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~p~f~agqC~l~l 118 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCCccchHHHHHHHh
Confidence 33445688999999999999886542 24555666666777789999999999988776532 444466678899999
Q ss_pred CCHHHHHHHHHHHHHc
Q 011905 427 NHSVEAAKLARFMLKK 442 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~ 442 (475)
|+.+.|...|...+..
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999884
No 230
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.62 E-value=0.84 Score=35.95 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=13.9
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHh
Q 011905 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 141 (475)
.+.+......++.+...+ ..+...++.++..|++
T Consensus 20 ~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 20 RNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred CCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 334444444444444333 2333444444444443
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.61 E-value=0.5 Score=45.84 Aligned_cols=153 Identities=18% Similarity=0.125 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG------GCYSSLVVELVR----TKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~ 378 (475)
+..++....-.||-+.+++.+.+..+.+-.-.. -.|+.++..++. ....+.|.+++..+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 455666667778888888777776553211111 234444444443 34677888888888865 677666
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHc-CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-HHH
Q 011905 379 CSVMI-RELCLGGQVLEGFCLYEDIEKI-GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD-KIV 455 (475)
Q Consensus 379 ~~~li-~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l~ 455 (475)
|...- +.+...|++++|.+.+++.... ..-+......+--+..++.-.++|++|.+.|..+.+.. .-+..+|. ...
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 65443 3456678888888888865531 11112344556667777788888888888888888876 33444444 334
Q ss_pred HHHHhcCCH
Q 011905 456 EHLKKSGDE 464 (475)
Q Consensus 456 ~~~~~~g~~ 464 (475)
-++...|+.
T Consensus 348 ~c~~~l~~~ 356 (468)
T PF10300_consen 348 ACLLMLGRE 356 (468)
T ss_pred HHHHhhccc
Confidence 445556666
No 232
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.61 E-value=0.11 Score=44.82 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=48.7
Q ss_pred CcCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC----------------CHHH
Q 011905 231 AANLVAYSALLDGICRL-----GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG----------------MMKE 289 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~ 289 (475)
+-|-..|-..+..+... +.++-....+..|.+ .|+..|..+|+.|++.+-+.. +-+-
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e--yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE--YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH--hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 44556666666666533 445555555666666 556667777777766654432 1223
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011905 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 320 (475)
+++++++|...|+.||..+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4555555555555555555555555555444
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=1.5 Score=38.64 Aligned_cols=145 Identities=17% Similarity=0.102 Sum_probs=81.4
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.....|++.+|..+|+....... -+...--.+..+|...|+.+.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 44566777777777777665432 23445556777777888888888888777543212222222223344444444444
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011905 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.+++.+. -|...-..++..+...|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCC
Confidence 44444444332 2255555666777777777777777776666643332 334445555655555553
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=95.52 E-value=0.99 Score=36.13 Aligned_cols=118 Identities=12% Similarity=0.001 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCCC------CHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011905 286 MMKEALGILDRMEALGCAP------NRVTI---STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p------~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
+.++..+.+.+....|..+ +..+. -....-+...|++++|..+|.-+...++. +..-+..|..++-..++
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHH
Confidence 4455555555555555322 11122 22333456789999999999999887654 56667888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+++|+..|......+. -|...+-..-.++...|+.+.|+..|+...+.
T Consensus 87 y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 87 FQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 9999999988765442 34444556677889999999999999998883
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.3 Score=44.69 Aligned_cols=96 Identities=18% Similarity=0.065 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
+++.+..+|.+.+++.+|++...+.++.+ .+|....-.=-.+|...|+++.|+..|+++++.. | .|..+-+.++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P-~Nka~~~el~~l 334 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--P-SNKAARAELIKL 334 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--C-CcHHHHHHHHHH
Confidence 46777788888888888888888888764 4555555555677888888888888888888864 3 355666666666
Q ss_pred HHhcCCHHHH-HHHHHHHHHc
Q 011905 423 LCRKNHSVEA-AKLARFMLKK 442 (475)
Q Consensus 423 ~~~~g~~~~A-~~~~~~m~~~ 442 (475)
--+..++.+. .++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 5555444443 6777777754
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=0.43 Score=41.40 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=42.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCA--ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (475)
+.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.+.....+.-...+--+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 444455555555555543211 112233445555555555555555555555532222222233444444455555555
Q ss_pred HHHHHHHHHHH
Q 011905 289 EALGILDRMEA 299 (475)
Q Consensus 289 ~a~~~~~~m~~ 299 (475)
+|..+|++..+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 237
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.47 E-value=4.1 Score=42.93 Aligned_cols=77 Identities=14% Similarity=0.081 Sum_probs=37.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL--ACSVMIRELCLGGQVL 393 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~ 393 (475)
+.....+++|--.|+..-+ ..--+.+|..+|++++|+.+..++... -|.. +--.|..-+...++.-
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 3344555555555544311 223445566666666666666555311 1111 1133445555566666
Q ss_pred HHHHHHHHHHH
Q 011905 394 EGFCLYEDIEK 404 (475)
Q Consensus 394 ~a~~~~~~~~~ 404 (475)
+|-++..+...
T Consensus 1017 eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1017 EAAKILLEYLS 1027 (1265)
T ss_pred hHHHHHHHHhc
Confidence 66655555544
No 238
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.38 E-value=2 Score=38.75 Aligned_cols=129 Identities=11% Similarity=0.144 Sum_probs=58.0
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHh--cCC----HHHHHHHHHHHHHCCC---CcCHHHHHHHHHHHHhcCC--
Q 011905 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCN--AGR----LEDACGLFKVMKRHGC---AANLVAYSALLDGICRLGS-- 249 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~~----~~~a~~~~~~m~~~g~---~~~~~~~~~ll~~~~~~g~-- 249 (475)
++.+.+++.|.+.|+.-+..+|-+..-.... ..+ ...|..+|+.|++... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445556666666666665555442222222 111 4456677777776542 2334444444433 2222
Q ss_pred --hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHH
Q 011905 250 --MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM--MKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 250 --~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
.+.++.+|+.+...|..-.-+......++.......+ ..++.++++.+.+.|+++....|..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 3445555555555332211122222222222211111 2355556666666666555554443
No 239
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=3.4 Score=41.19 Aligned_cols=325 Identities=13% Similarity=0.060 Sum_probs=184.1
Q ss_pred CCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCH--HHHHHHHH-hcccCCC
Q 011905 89 SYRHSSFMYNR-----ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA--NEAMWVLR-KMPEFDL 160 (475)
Q Consensus 89 ~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~A~~~~~-~m~~~~~ 160 (475)
|.+-+...|.. ++..+...+.+..|+++-..+...-..- ...|......+.+..+. +++++.++ ++... .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~ 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C
Confidence 55556666654 3455666778888888776653322111 45565566666655322 23333333 33221 2
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------
Q 011905 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY----PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG------- 229 (475)
Q Consensus 161 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------- 229 (475)
....+|..+.+-....|+.+.|..+++.=...+.. .+..-+...+.-+.+.||.+-...++-.+.++-
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 34557788888888899999999988653322211 122335566677778888888777777666531
Q ss_pred ----CCcCHHHHHHHHH--------HHHhcCChHHHHHHHHHHH--hcCCCCCCcHHHHHHHHHHHHhcCC---------
Q 011905 230 ----CAANLVAYSALLD--------GICRLGSMERALELLGEME--KEGGDCSPNVVTYTSVIQIFCGKGM--------- 286 (475)
Q Consensus 230 ----~~~~~~~~~~ll~--------~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~~~~~~li~~~~~~g~--------- 286 (475)
.+.....|.-+++ .+.+.++-.++...|..-. .... +.+-..........+.+...
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~-~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAET-IEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhh-hcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 1111122222221 1112222222222221100 0000 00111112223333443332
Q ss_pred -HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 287 -MKEALGILDRME-ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 287 -~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 364 (475)
..+-+.+.+.+. +.|......+.+--+.-+...|+-.+|.++-.+.. .||...|-.=+.+++..+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 112222233332 22434444556666667778899999988776653 467788888899999999999888877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 365 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
+.+. .+.-|...+.+|.+.|+.++|.+++-+... +.-.+.+|.+.|++.+|.++--+
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----------hHHHHHHHHHhccHHHHHHHHHH
Confidence 6653 135677789999999999999888754432 22577889999999999877543
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.6 Score=41.62 Aligned_cols=153 Identities=16% Similarity=0.044 Sum_probs=103.2
Q ss_pred hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH----HHHHHHHhcCCHH
Q 011905 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV----SMIKGFCNAGRLE 216 (475)
Q Consensus 141 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~li~~~~~~~~~~ 216 (475)
-.|.+.+|-..++++.+. ++.|...++..=+++.-.|+.+.-...++++...- .+|...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 467778888888888763 46688888888888888998888888888876531 34443332 3334456788889
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+|++.-++..+.+ +.|.....++...+--.|++.++.+++.+-... .... .-..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9988888877765 347777778888888889999998887665432 1000 01112333344455668888999998
Q ss_pred HHH
Q 011905 295 DRM 297 (475)
Q Consensus 295 ~~m 297 (475)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 653
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.18 E-value=0.098 Score=48.89 Aligned_cols=98 Identities=16% Similarity=-0.027 Sum_probs=70.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++..+.+ + ..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n----~~ 145 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--N----LK 145 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--c----hh
Confidence 4567889999999999999999999998865 5664 358888899999999999999999999853 1 12
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHcCCC
Q 011905 416 HSVLLL--GLCRKNHSVEAAKLARFMLKKRIW 445 (475)
Q Consensus 416 ~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~ 445 (475)
|..+.. .+....+..+..++++.+.+.|.+
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 332111 011223344667777777777743
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.17 E-value=0.62 Score=43.76 Aligned_cols=66 Identities=11% Similarity=-0.014 Sum_probs=50.0
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT----IIYNNVIRLFCEKGDMIAADELMKGMGLI 193 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 193 (475)
+.+...++.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567777778888888888888888888877653 442 34777888888888888888888887753
No 243
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.10 E-value=1.1 Score=34.17 Aligned_cols=136 Identities=12% Similarity=0.191 Sum_probs=68.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHH---HHHHHHHHHhcCCH
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT---YTSVIQIFCGKGMM 287 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~ 287 (475)
-.|..++..++..+.... .+..-+|.+|.-....-+-+...++++.+-+- -|... ...++..|+..|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki-----FDis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI-----FDISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-----S-GGG-S-THHHHHHHHHTT--
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh-----cCchhhcchHHHHHHHHHhcc-
Confidence 356667777777766654 25555666665555555555566666655442 12211 1122333333322
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
+...+...+......|+-+.-.+++.++.+ .-.+++.....+..+|.+.|+..++.+++.+.
T Consensus 85 -----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 85 -----------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 223344555666666777777777766654 22345556666667777777777777777777
Q ss_pred HHCCCC
Q 011905 368 LASGVK 373 (475)
Q Consensus 368 ~~~~~~ 373 (475)
-+.|++
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 666653
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.92 E-value=0.086 Score=31.78 Aligned_cols=39 Identities=18% Similarity=-0.018 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+|..+...|.+.|++++|.++++++++.. |-++..+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45566666667777777777777776665 4444444433
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.87 E-value=3.7 Score=39.09 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=27.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKVVAGGSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
+..++.+.|+.++|.+.+.+|.+.... ........|+.++...+++.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444555555555555555543221 12234444555555555555555555554
No 246
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.85 E-value=1.7 Score=45.49 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchh--hHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLL 421 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~li~ 421 (475)
|.+....+...+.+++|.-+|+..-+ ..-.+.+|..+|++.+|+.+..++.... +.. +-..|+.
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-----de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-----DELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-----HHHHHHHHHHHH
Confidence 44444555566777777766665421 2234667777888888887777665421 211 2245666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 011905 422 GLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~ 441 (475)
-+...+++-+|-++..+...
T Consensus 1008 ~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHcccchhHHHHHHHHhc
Confidence 67777888888777766653
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.52 Score=43.24 Aligned_cols=86 Identities=8% Similarity=-0.157 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
.+..|.-++.+.+++..|++..++..+.+ +.|....-.-..++...|+++.|+..|+++++.. |-|..+-+.++..
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD---PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 46667778899999999999999999976 3477777788899999999999999999999987 6666666666666
Q ss_pred HHhcCCHhHH
Q 011905 458 LKKSGDEELI 467 (475)
Q Consensus 458 ~~~~g~~~~a 467 (475)
..+..+.+..
T Consensus 335 ~~k~~~~~~k 344 (397)
T KOG0543|consen 335 KQKIREYEEK 344 (397)
T ss_pred HHHHHHHHHH
Confidence 6555554443
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.54 E-value=3.3 Score=37.11 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=13.2
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011905 422 GLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~ 440 (475)
.+.+.+++++|.++|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456788888888877544
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.51 E-value=1.8 Score=33.81 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=35.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011905 281 FCGKGMMKEALGILDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
..+.|++++|.+.|+.+...- -+-....--.++.+|.+.+++++|...+++.++..+.....-|...+.+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344556666666666555431 0112233445555666666666666666666554433222234444444433
No 250
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.41 E-value=2.2 Score=34.48 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=12.9
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCChHH
Q 011905 224 VMKRHGCAANLVAYSALLDGICRLGSMER 252 (475)
Q Consensus 224 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 252 (475)
.+.+.+++|+...+..+++.+.+.|++..
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33344444444444444444444444333
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=3.4 Score=36.51 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=79.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
.....|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345567777777777777665433 2344556677777777777777777765432111111121122333334444444
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCC
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~ 463 (475)
...+-.++... +.|...--.+...+...|+.++|.+.+-.++++.. .-|...-..++..+.-.|.
T Consensus 222 ~~~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 44444444332 22556666667777777777777777666665432 3444555566666666663
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.31 E-value=2.3 Score=40.38 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=85.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 318 (475)
.+|.-.-+..+...-.+.-.+..+. .||....-+++ +--......++.+++++..+.|- .. +.+
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei----~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~-------lg~ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI----NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----AS-------LGK 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh----hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hh-------hch
Confidence 4444455556666666666666652 34432222111 22234456777777777665431 01 111
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 011905 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP-DGLACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 319 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 397 (475)
.......-..++....++..+-..+-..+..++-+.|+.++|++.+++|.+..... +......|+.++...+.+.++..
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 11111111122223333333333344556667778888888888888887642111 23355667788888888888888
Q ss_pred HHHHHHHcCCCCCCchhhHHHHH
Q 011905 398 LYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~li 420 (475)
++.+..+.. .|..-..+|+..+
T Consensus 317 lL~kYdDi~-lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDIS-LPKSATICYTAAL 338 (539)
T ss_pred HHHHhcccc-CCchHHHHHHHHH
Confidence 888765432 2222344555543
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.13 E-value=3.5 Score=35.67 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.+.+.|.+.|.+..|..-+++|++. .|+ ...+-.+..+|...|-.++|...-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3557788999999999999999986 333 245667778999999999998876666654
No 254
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.03 E-value=0.71 Score=40.72 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34445555555555555555555555432 22444555555555555555555555554443
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.00 E-value=1.4 Score=33.57 Aligned_cols=91 Identities=13% Similarity=-0.003 Sum_probs=59.3
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH---HHHHHhcCC
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM---IKGFCNAGR 214 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~ 214 (475)
+.+..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+..-......+.+. ...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566778888888887766542 346677888888888888888888777776653212233322222 234556777
Q ss_pred HHHHHHHHHHHHHCC
Q 011905 215 LEDACGLFKVMKRHG 229 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g 229 (475)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766665
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.96 E-value=2.4 Score=33.14 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=38.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 317 (475)
...+.|++++|.+.|+.+..+-..-+-...+--.++.+|.+.+++++|...+++..+....-...-|...+.+++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 344556666666666666654211122233444456666666666666666666665432222233444444433
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.95 E-value=2.1 Score=32.59 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=29.1
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
++...|+++.|++.|.+.... ++.....||.-..++.-.|+.++|++=+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344555666666665555542 234455555555555555555555555555443
No 258
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.91 E-value=2.8 Score=33.86 Aligned_cols=135 Identities=13% Similarity=0.150 Sum_probs=65.9
Q ss_pred HHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011905 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 184 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
.+++..+...+++|+...+..+++.+.+.|.+... ..+.+.++-+|.......+-.+. +....+.++--+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 34444555566667777777777777777765443 33344444445444333332222 2233344444444331
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 ------L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ------LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ------hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113445556666667777776666554322 111123455555555555444444444433
No 259
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.90 E-value=5.2 Score=36.82 Aligned_cols=284 Identities=11% Similarity=0.022 Sum_probs=181.3
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHhcCCHHHHHHHHHhcccCCCCCCHhh--HHHHHHHHHhcCCh
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTII--YNNVIRLFCEKGDM 180 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~ 180 (475)
.-.|+-..+.++-..-.+. +.-|..-+..++. +..-.|+++.|.+-|+.|... |.... ...|.-..-+.|+.
T Consensus 95 agAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 95 AGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred hccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccH
Confidence 3457777777766554321 2334444545554 344579999999999999872 33222 23333344568999
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHH--HHHHHHHH---hcCChHHHH
Q 011905 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAY--SALLDGIC---RLGSMERAL 254 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~--~~ll~~~~---~~g~~~~a~ 254 (475)
+.|..+-+..-... +-=...+...+...+..|+|+.|+++.+.-.... +.++..-- ..|+.+-. -..+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 99998888776432 2235678889999999999999999999766543 33443221 22222211 124566777
Q ss_pred HHHHHHHhcCCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 255 ELLGEMEKEGGDCSPNVVT-YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 333 (475)
..-.+..+. .||..- --.-..++.+.|+..++-.+++.+-+....|+.. .+..+.+.|+. +..-++...
T Consensus 250 ~~A~~a~KL----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~ 319 (531)
T COG3898 250 DDALEANKL----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAK 319 (531)
T ss_pred HHHHHHhhc----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHH
Confidence 776666664 344322 2234567899999999999999999886555542 22334455553 333333322
Q ss_pred hC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHc
Q 011905 334 AG-GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL-CLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 334 ~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~ 405 (475)
+. ..+| +......+..+-...|++..|..--+..... .|....|..|.+.- ...|+-.++++.+-+..+.
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 11 1223 4455667777888889999888777766644 78888888777654 4559999999988888774
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=1.9 Score=43.48 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011905 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS----MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
..-++.+++...++.|+.+.+.-. .|..+... ..+-+.+.|++++|...|-+-... ++|. .++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 344555555556666655544321 22222222 223334556666665555444322 1221 13344
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 323 (475)
|....+..+-...++.+.+.|. .+...-+.|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.+
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl---a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL---ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc---ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 4444555555555555555442 344445556666666666665555544333 2211 111233444455555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
+|..+-..... +...... .+-..+++++|++.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 55544433322 1111222 233446666666666554
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.50 E-value=0.9 Score=40.10 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHHHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----HGCAANLVAYSAL 240 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~~l 240 (475)
+..++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3444445555555555555555555433 34455555555555555555555555554443 3445544444333
No 262
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=4.9 Score=40.73 Aligned_cols=244 Identities=11% Similarity=0.079 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH----HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011905 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 98 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 173 (475)
..-+..+....-++.|..+... . ..+..+...+.. .+.+.|++++|...|-+-... +.| ..+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---Q--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---c--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 3444555555555555554332 2 223333333333 444567777777766655432 112 224555
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011905 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
|........-..+++.+.+.|+ .+...-..|+.+|.+.++.++..++.+... .|.- ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 5666666666777777777664 344455667777777777777666655443 2211 11134456666666666666
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 333 (475)
.-+-..... +......+ +-..|++++|++.++.+.-...-+....|...+- ....++-..++-+..
T Consensus 483 ~~LA~k~~~-------he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll----~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 483 ELLATKFKK-------HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKILL----EHDPEETMKILIELI 548 (933)
T ss_pred HHHHHHhcc-------CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hhChHHHHHHHHHHH
Confidence 665544432 22223332 3456778888888776643222223333332221 234555555555544
Q ss_pred hCCCCCChhhHHHH-----HHHHHhcCCHHHHHHHHHHHHHC
Q 011905 334 AGGSVSSGGCYSSL-----VVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 334 ~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
.....++....... -....-.++++....+++.|.+.
T Consensus 549 t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~ 590 (933)
T KOG2114|consen 549 TELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI 590 (933)
T ss_pred hhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc
Confidence 43332222222211 12223446677777777767653
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=3.3 Score=37.20 Aligned_cols=157 Identities=8% Similarity=-0.049 Sum_probs=114.8
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCChH
Q 011905 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH---GCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
-..|++.+|...++++.+. .+.|...++-.=.+|.-.|+.+.-...++++... +++-.......+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3578888888889998874 4778888888889999999999999999888754 23323344455666778899999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011905 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL---GCAPNRVTISTLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~ 328 (475)
+|++.-++..+-+ +.|.-+-.++...+-..|+..++.++..+-... +--.-.+.|-...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999998854 456666777888888899999999887654321 1111123344444456677899999999
Q ss_pred HHHHHhC
Q 011905 329 IDKVVAG 335 (475)
Q Consensus 329 ~~~~~~~ 335 (475)
|+.-+-.
T Consensus 270 yD~ei~k 276 (491)
T KOG2610|consen 270 YDREIWK 276 (491)
T ss_pred HHHHHHH
Confidence 9865443
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.48 E-value=2.1 Score=38.73 Aligned_cols=166 Identities=13% Similarity=0.126 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHH
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRH-GCAA---NLVAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTY 274 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ 274 (475)
|..+.+++-+.-++.+++.+-+.-... |..| .-....++..+....+.++++++.|+...+-. .+......+|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 334444444444455555444433321 1111 11223334455555556666666666554311 0011123455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-C
Q 011905 275 TSVIQIFCGKGMMKEALGILDRMEA----LGCAPNRVTI-----STLIKGFCVEGNLDEAYQLIDKVVA----GGSVS-S 340 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~-~ 340 (475)
-.+...|.+..|+++|.-+.....+ .++..-..-| ..+.-++...|.+..|.+.-++..+ .|-.+ .
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 5666666666666666655443321 1211111112 2223345555666666665555433 23222 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
......+.+.|-..|+.+.|+.-|+..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 233445556666667766666666554
No 265
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.26 E-value=1.7 Score=35.80 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
..+..+...|++.|+.++|.+.|.++.+...+...-...+-.+|....-.+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455566666666666666666666655322111223334445555555666666665555443
No 266
>PRK11906 transcriptional regulator; Provisional
Probab=93.23 E-value=6.3 Score=37.41 Aligned_cols=148 Identities=13% Similarity=-0.019 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHH-HcCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011905 287 MKEALGILDRME-ALGCAPN-RVTISTLIKGFCVE---------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 287 ~~~a~~~~~~m~-~~~~~p~-~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
.+.|+.+|.+.. ...+.|+ ...|..+..++... .+..+|.++-+...+.+.. |..+...+..++...+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 466777787776 2233444 33444444333321 2344566666666666643 5666666666667777
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011905 356 RLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
+++.|...|++.... .||. .+|...-..+.-.|+.++|.+.+++..+....- ....+....++.|+. ...++|++
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~-~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR-RKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh-hHHHHHHHHHHHHcC-CchhhhHH
Confidence 788888888887754 4553 333333344556788888888888876653110 122223333445543 45667777
Q ss_pred HHHHH
Q 011905 435 LARFM 439 (475)
Q Consensus 435 ~~~~m 439 (475)
++-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 76543
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=4 Score=32.93 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=21.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
+.+..++|+.-|..+.+.|.+--|-. ..-.+.......|+...|...|.++-.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvL-A~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVL-ARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHH-HHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 33444455555555544433322211 111122233444444445554444443
No 268
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.02 E-value=6.1 Score=34.96 Aligned_cols=147 Identities=11% Similarity=0.055 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-cCCccCHHhHHHHHHHHHhc-C-CHHHHHHHHHhccc-CCCCCCHhhHHHHHH
Q 011905 97 YNRACEMSRIKQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKA-R-LANEAMWVLRKMPE-FDLRPDTIIYNNVIR 172 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~-~-~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~ 172 (475)
|..+++ +.....+|+.+++.... ..+--|..+...+++..... + ....-.++.+-+.. .+-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555442 33455667777774322 34566777777777766552 1 22222333333332 234677888888999
Q ss_pred HHHhcCChhHHHHHHHHhccC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCcCHHHHHHHHHHHHh
Q 011905 173 LFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIKGFCNAGRLEDACGLFKV-----MKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
.+++.+++.+-.++++..... +...|...|..+|+.....||..-...+.++ +++.|+..+...-..+-+.+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 999999999999999887664 5567888899999999999998877776653 4456677777666666555443
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=5.3 Score=34.24 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASG---VKPDGLACSVMIRELCLGGQVLEGFCL 398 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~ 398 (475)
|...|-.+....++..|.+.++.--+.+ -.-+..+...|+.+| ..|+.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 4455555555666667777666533211 122345566666654 34555554433
No 270
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.71 E-value=12 Score=37.48 Aligned_cols=181 Identities=18% Similarity=0.144 Sum_probs=105.0
Q ss_pred hhHHHHHHHHhccCCCCCChhhHHHHH--HH-HHhcCCHHHHHHHHHHHHH-------CCCCcCHHHHHHHHHHHHhcC-
Q 011905 180 MIAADELMKGMGLIDLYPDIITYVSMI--KG-FCNAGRLEDACGLFKVMKR-------HGCAANLVAYSALLDGICRLG- 248 (475)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~~~~~~~~li--~~-~~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~g- 248 (475)
...|.++++...+.|. ........++ .+ +....|.+.|...|+.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567777777766552 1222121222 22 4466788888888888766 44 3335556666676643
Q ss_pred ----ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hc
Q 011905 249 ----SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-KGMMKEALGILDRMEALGCAPNRVTISTLIKGFC----VE 319 (475)
Q Consensus 249 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~ 319 (475)
+.+.|.+++......| .|+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 5677899988888855 3554443332222222 24678899999888888743 22222222222 23
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011905 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 320 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 372 (475)
.+.+.|..++....+.|...... -...+..+.. ++++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g~~~A~~-~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNPSAAY-LLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHccChhhHH-HHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 46788888888888888332222 1222223333 677777777766666553
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.70 E-value=0.45 Score=28.55 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011905 237 YSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
+..+...|.+.|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555553
No 272
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.70 E-value=9 Score=36.10 Aligned_cols=390 Identities=11% Similarity=0.014 Sum_probs=191.8
Q ss_pred CCChHHHHHHHHHhhhCCCCC---CCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHhcCC
Q 011905 71 PSQSQMGIRFFIWAALQSSYR---HSSFMYN-RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARL 144 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~ 144 (475)
+++.+.+-++|........-. ...+.+. .++.. --..+.+.+...+....+.. | ...|-.+.. .+.+.+.
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnA-ffl~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNA-FFLNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHH-HHHhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhh
Confidence 455566666666654433211 1222222 22332 23466777777776665542 2 334444444 3456788
Q ss_pred HHHHHHHHHhcccC--CCCC------------CHhhHHHHHHHHHhcCChhHHHHHHHHhccCC----CCCChhhHHHHH
Q 011905 145 ANEAMWVLRKMPEF--DLRP------------DTIIYNNVIRLFCEKGDMIAADELMKGMGLID----LYPDIITYVSMI 206 (475)
Q Consensus 145 ~~~A~~~~~~m~~~--~~~~------------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li 206 (475)
+++|.+.+..-.+. +.++ |...=+..+..+...|++.++..+++++...= ..-+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 89988887765443 2221 22233567788999999999999998886533 336888898866
Q ss_pred HHHHhcCC---------------HHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhc
Q 011905 207 KGFCNAGR---------------LEDACGLFKVMKRH------GCAANLVAYSALLDGICRL--GSMERALELLGEMEKE 263 (475)
Q Consensus 207 ~~~~~~~~---------------~~~a~~~~~~m~~~------g~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~ 263 (475)
-.+++.-- ++.+.-..++|... .+.|.......++....-. .+..--.+++......
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 65554311 12222222222211 1233333333343333221 1222223333333221
Q ss_pred CCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011905 264 GGDCSPN-VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP----NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 264 ~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 338 (475)
-+.|+ ..+...++..+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|...+.-+...++.
T Consensus 255 --yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 255 --YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred --ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 12233 2222333333333 4444444444433221111 2346677777777777777777766655433211
Q ss_pred CC-------------------hhhHH------------------------HH---HHHHHhcCC-HHHHHHHHHHHHHCC
Q 011905 339 SS-------------------GGCYS------------------------SL---VVELVRTKR-LKEAEKLFSKMLASG 371 (475)
Q Consensus 339 ~~-------------------~~~~~------------------------~l---i~~~~~~g~-~~~A~~~~~~m~~~~ 371 (475)
.. ...++ .| ..-+-+.|. -++|+++++...+-
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f- 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF- 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-
Confidence 10 00010 11 112223343 56677777666542
Q ss_pred CCC-CHHH----HHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCC--chhhHHHHHHH--HHhcCCHHHHHHHHHHH
Q 011905 372 VKP-DGLA----CSVMIRELCL---GGQVLEGFCLYEDIEKIGFLSSV--DSDIHSVLLLG--LCRKNHSVEAAKLARFM 439 (475)
Q Consensus 372 ~~p-~~~~----~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~--~~~~g~~~~A~~~~~~m 439 (475)
.| |... +..+=.+|.+ ...+.+-..+-+-+.+.|+.|.. +...-|.+.++ +...|++.++.-.-.-+
T Consensus 410 -t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 -TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred -ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22 2211 1111122222 23344444444445555654421 33344555444 34567777776554444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 440 LKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.+ +.|++.++..++-++....++++|..+++
T Consensus 489 ~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 489 TK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 43 35788888888888888888888876654
No 273
>PRK09687 putative lyase; Provisional
Probab=92.61 E-value=7.4 Score=34.90 Aligned_cols=136 Identities=13% Similarity=0.052 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011905 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG-MMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
+..+-...+.++.+.|+ +++...+-.+... ++..+-...+.++.+.+ +.+.+...+..+.. .++...-..
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d-----~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~ 211 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD-----PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIE 211 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHH
Confidence 44444455555555554 3444555444442 33333333444444432 13344444444442 234444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
.+.++.+.++. .+...+-...+.+. .....+.++...|.. +|...+..+.+. .||...-...+.+|
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 55566666553 34444444443322 123455566666664 466666666543 34555544444443
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.48 E-value=3.2 Score=34.23 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPD--IITYVSMIKGFCNAGRLEDACGLFKVM 225 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m 225 (475)
+..+...|++.|+.+.|.+.|.++......+. ...+-.+|+.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44444555555555555555555444322211 223344445555555555555444443
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.44 E-value=7.8 Score=34.76 Aligned_cols=18 Identities=6% Similarity=-0.108 Sum_probs=11.0
Q ss_pred HHHHHhcCCHhHHhhccc
Q 011905 455 VEHLKKSGDEELITNLPK 472 (475)
Q Consensus 455 ~~~~~~~g~~~~a~~l~~ 472 (475)
+..+.+.++++.|.+.++
T Consensus 253 ~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHhhcCHHHHHHHHH
Confidence 344566677777766554
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.38 E-value=0.34 Score=27.60 Aligned_cols=26 Identities=12% Similarity=-0.130 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999999998855
No 277
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.31 E-value=6.4 Score=33.43 Aligned_cols=167 Identities=19% Similarity=0.130 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
..+......+...+++..+...+...... ........+......+...+.+..+.+.+........ .+........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 136 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP---DPDLAEALLA 136 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC---CcchHHHHHH
Confidence 34444444445555555555554444331 1122333444444444555555555555555544210 0111111111
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011905 279 Q-IFCGKGMMKEALGILDRMEALGC--APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 279 ~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
. .+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 2 44455555555555555433110 01122222222223344455555555554444322212233444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 011905 356 RLKEAEKLFSKMLA 369 (475)
Q Consensus 356 ~~~~A~~~~~~m~~ 369 (475)
+.+.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 55555555554443
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.28 E-value=8.8 Score=35.01 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 011905 308 TISTLIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~ 330 (475)
.|..|-..|.+..|+++|.-+..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhH
Confidence 34444445555555555544433
No 279
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=9.9 Score=35.35 Aligned_cols=156 Identities=10% Similarity=-0.017 Sum_probs=96.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH----------
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD--GICRLGSMERALELLGEMEKEGGDCSPNVVTY---------- 274 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 274 (475)
.++.-.|+.++|.++--..++.. ....+..+++ ++.-.++.+.|...|++.+..+ |+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld----pdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD----PDHQKSKSASMMPKKL 249 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC----hhhhhHHhHhhhHHHH
Confidence 34556788888887777666653 1223333333 3344677888888888887743 433221
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011905 275 ---TSVIQIFCGKGMMKEALGILDRMEAL---GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 275 ---~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
..=..-..+.|++..|.+.|.+.... +..|+...|.....+..+.|+.++|+.--++..+.+... ...|..-.
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-ikall~ra 328 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY-IKALLRRA 328 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-HHHHHHHH
Confidence 11122345778888888888887653 345566667777777778888888888877776643211 22233334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 011905 349 VELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
.++...+++++|.+-|+...+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667888888888777654
No 280
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.87 E-value=7.2 Score=33.09 Aligned_cols=227 Identities=21% Similarity=0.120 Sum_probs=158.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011905 212 AGRLEDACGLFKVMKRHGCA-ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
.+....+...+......... .....+......+...+.+..+...+...... .........+......+...++...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHH
Confidence 34555666666666554322 13577788888899999999999999888751 01235566777777888888889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 291 LGILDRMEALGCAPNRVTISTLIK-GFCVEGNLDEAYQLIDKVVAGGS--VSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 291 ~~~~~~m~~~~~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
.+.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+...
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 115 LELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99999888754333 122222333 78899999999999999866332 122334444445567788999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+.........+..+...+...++.+.+...+......... ....+..+...+...+..+++...+.+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 86531113567777778888888999999999998886421 23445555555557778999999988888765
No 281
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.83 E-value=8.3 Score=34.14 Aligned_cols=148 Identities=10% Similarity=0.053 Sum_probs=104.5
Q ss_pred HHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHh-cCCccCHHhHHHHHHH
Q 011905 62 VIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI--KQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNL 138 (475)
Q Consensus 62 ~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~ 138 (475)
+..+.++ -.....|++.|...--......++.....+++.... ........++++.+.. .|..++..+...++..
T Consensus 134 Y~~LVk~--N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~ 211 (292)
T PF13929_consen 134 YWDLVKR--NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEI 211 (292)
T ss_pred HHHHHHh--hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHH
Confidence 4444433 333455677776532223356677777777776544 2345555566666553 3457888899999999
Q ss_pred HHhcCCHHHHHHHHHhcccC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHH-----hccCCCCCChhhHHHHHHHHHh
Q 011905 139 CEKARLANEAMWVLRKMPEF-DLRPDTIIYNNVIRLFCEKGDMIAADELMKG-----MGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-----m~~~~~~~~~~~~~~li~~~~~ 211 (475)
+++.+++.+-.++++..... +...|...|...|....+.|+..-..++.++ +++.++..+...-..+-+.+.+
T Consensus 212 L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 212 LAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99999999999999987765 6677899999999999999999888888775 4566777777766666555544
No 282
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.79 E-value=3 Score=37.02 Aligned_cols=101 Identities=10% Similarity=0.128 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011905 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 379 (475)
.....+...++..-.....++.+...+-.+.... ..++. +-...++.+. .-++++++.++..=+..|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 3334444444444444555555555555544321 11111 1112222222 22455666666655566666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+.+|+.+.+.+++.+|.++.-.|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 66666666666666666655555543
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.76 E-value=11 Score=35.03 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=96.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CcCHHHHHHHHHHHH
Q 011905 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC----AANLVAYSALLDGIC 245 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~ 245 (475)
...+.-+.|+++...+........ .++...+..+... +.++.+++...++.....-. ......|......+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 355677888888866666655432 2344455544433 77888888888777654310 112334455555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-----cCCHHHHHHHH---HHHHH--cCCCCCHHHHHHHHHH
Q 011905 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-----KGMMKEALGIL---DRMEA--LGCAPNRVTISTLIKG 315 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~a~~~~---~~m~~--~~~~p~~~~~~~li~~ 315 (475)
+...+.+..++.+-..... .+......++..... ..+++.-..++ ..+.. ........++..++..
T Consensus 80 ~lq~L~Elee~~~~~~~~~----~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS----QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc----ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 5555555555544443211 112222233322211 11222111111 11111 0112234456666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
+.+.|.++.|...+..+...+... +......-...+-..|+..+|+..++...+
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777766543211 223333445555666777777777666665
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.65 E-value=10 Score=34.32 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCC-
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCV--E----GNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKR- 356 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~----~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~- 356 (475)
+++.+.+++.|.+.|..-+..+|-+..-.... . ....++..+|+.|.+..+.. +...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888888777666553333332 2 23557888888888765433 22334444432 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 357 ---LKEAEKLFSKMLASGVKPDG--LACSVMIRELCLGGQ--VLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 357 ---~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
.+.++.+|+.+.+.|+..+. .....++..+-.... +.++.++++.+.+.|++. ....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ki--k~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKI--KYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcc--ccccccHHH
Confidence 35567788888877776543 233333332222222 457788888888888765 444455553
No 285
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.43 E-value=13 Score=35.10 Aligned_cols=143 Identities=12% Similarity=-0.022 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC-SVMIR 384 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~ 384 (475)
..|...+....+..-++.|..+|-+..+.+ ..+++..+++++..++. |+...|.++|+--... -||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677788788888999999999999888 56678889999987754 6778899999875544 4554443 34556
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011905 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
-+...++-+.|..+|+...++--. ..-...|..+|.--..-|+...+..+-+.|... .|...+.....
T Consensus 475 fLi~inde~naraLFetsv~r~~~-~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~ 542 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEK-TQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT 542 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHH-hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence 677889999999999955543110 112467999998888899999888887777654 24444444333
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.28 E-value=0.36 Score=27.08 Aligned_cols=22 Identities=14% Similarity=-0.004 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHH
Q 011905 412 DSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~ 433 (475)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5555666666666666665554
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.81 E-value=2.9 Score=29.94 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011905 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 172 (475)
+.-++.+-++.+......|++....+.+++|.+.+++..|+.+|+..+... ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 455667778888888889999999999999999999999999999877431 224556766664
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.78 E-value=0.68 Score=26.32 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555566666666555553
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.99 E-value=4.1 Score=36.23 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
-++++++.++..=.+.|+-||.++++.+|+.+.+.+++.+|.++.-.|+.
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34555555555555566666666666666666666666666555555544
No 290
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.95 E-value=4.7 Score=33.58 Aligned_cols=42 Identities=17% Similarity=0.003 Sum_probs=18.7
Q ss_pred cCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCChHHH
Q 011905 212 AGRLEDACGLFKVMKRH---GCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
..|.+++.+++....+. +-.+|+..+..|+..|.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444555444444331 1234444444455555444444444
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.85 E-value=0.44 Score=26.75 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=21.8
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHh
Q 011905 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468 (475)
Q Consensus 436 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (475)
|++.++.. |-++..|..+...|...|+.++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555 666777777777777777777765
No 292
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.25 E-value=1.7 Score=31.41 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011905 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 173 (475)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|+.+|+.++..- .+....|..+++-
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQE 88 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 344566677778888889999999999999999999999999999887542 2233377766653
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.89 E-value=20 Score=33.35 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011905 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 335 (475)
....+|..+...+.+.|+++.|...+..+...+... ++.....-+...-..|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456678889999999999999999999988754221 3344555567778889999999999988874
No 294
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.83 E-value=29 Score=35.25 Aligned_cols=45 Identities=2% Similarity=-0.108 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhc
Q 011905 97 YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 142 (475)
...++-.+-|.|+.+.|.++...... ........|...+..|...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 34566677888888888888844433 2344445566666666553
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.48 E-value=5.6 Score=28.54 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++.++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444445555455556666666666666666666666666665553
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.54 E-value=13 Score=29.76 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=26.1
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHH-HHHHHHhcCCHHHHHHHHHhcccC
Q 011905 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEF 158 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~ 158 (475)
..++.+.+..+++.++.. .|....... -...+.+.|++.+|..+|+.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 345566666666665553 232222222 122455666666666666666543
No 297
>PRK11906 transcriptional regulator; Provisional
Probab=87.22 E-value=28 Score=33.24 Aligned_cols=161 Identities=17% Similarity=0.075 Sum_probs=82.7
Q ss_pred hhH--HHHHHHHHhcC-----CHHHHHHHHHHHHH-CCCCcC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 011905 200 ITY--VSMIKGFCNAG-----RLEDACGLFKVMKR-HGCAAN-LVAYSALLDGICR---------LGSMERALELLGEME 261 (475)
Q Consensus 200 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~-~g~~~~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 261 (475)
..| ..++++..... ..+.|+.+|.+... ..+.|+ ...|..+..++.. ..+..+|.+..+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 55555554422 24567777777762 222333 3334333333221 223455666666666
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-
Q 011905 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS- 339 (475)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~- 339 (475)
+.+ +.|......+..+....++.+.|..+|++....+ || ..+|....-.+.-.|+.++|.+.+++..+..+.-
T Consensus 332 eld---~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 332 DIT---TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred hcC---CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 643 3566666666666666666777777777766643 33 3333333344455677777777777755543211
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (475)
-.......++.|+. ...+.|+++|-+
T Consensus 407 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 407 KAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 11112222223433 345666666644
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.20 E-value=11 Score=36.82 Aligned_cols=151 Identities=16% Similarity=0.136 Sum_probs=90.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 184 (475)
.-+++++.|..++.... ....+.+.+.+-+.|..++|+++- +|.. .-.....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHH
Confidence 34567777666554321 344555666677777777766542 2221 1122344567777777
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 011905 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264 (475)
Q Consensus 185 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (475)
++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 7765542 456677777777778887777777765432 4456666666777666666666666654
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
. . |...-+|...|+++++.+++.+-
T Consensus 723 ~---~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 K---N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c---c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 2 2 22334556677777777776543
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.17 E-value=1.6 Score=25.45 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+++.+...|...|++++|.+++++.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788888888889999999988887753
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.16 E-value=1.8 Score=23.93 Aligned_cols=30 Identities=13% Similarity=-0.081 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+|..+..+|...|++++|++.|++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467888889999999999999999988764
No 301
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.84 E-value=13 Score=36.47 Aligned_cols=132 Identities=17% Similarity=0.098 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 315 (475)
.-+.+...+.+.|-.++|+++- +|... -.....+.|+.+.|.++..+.. +..-|..|-++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-----------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-----------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDA 675 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-----------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHH
Confidence 4455666666777777666542 12111 1233456677777777765543 45667888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 395 (475)
..+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|. . |...-+|...|+++++
T Consensus 676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEEC 740 (794)
T ss_pred HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHH
Confidence 8888888888887766544 56677777777777666666666655553 2 2233345667888887
Q ss_pred HHHHHHH
Q 011905 396 FCLYEDI 402 (475)
Q Consensus 396 ~~~~~~~ 402 (475)
.+++.+-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 7665443
No 302
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.71 E-value=10 Score=27.60 Aligned_cols=47 Identities=11% Similarity=0.122 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555555555666777777777777777777777777777777665
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.68 E-value=2.2 Score=23.45 Aligned_cols=29 Identities=14% Similarity=-0.067 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|..+...+...|++++|++.+++.++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45666777777777777777777776653
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.87 E-value=17 Score=28.63 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=61.9
Q ss_pred hhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011905 342 GCYSSLVVEL---VRTKRLKEAEKLFSKMLASGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 342 ~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
.+.+.|++.. ...++++++..++..|.-. +|+. .++...+ +...|++++|.++|+++.+.+.. ..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~-----~p 78 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGA-----PP 78 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCC-----ch
Confidence 3445555443 3578999999999999854 6654 3444444 57889999999999999987532 22
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCChhhH
Q 011905 416 HSVLLLGLCRKNHSVEAA-KLARFMLKKRIWLQGPYV 451 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~ 451 (475)
|..-+.++|-.-.-|-.. ..-++++..+-+++....
T Consensus 79 ~~kAL~A~CL~al~Dp~Wr~~A~~~le~~~~~~a~~L 115 (153)
T TIGR02561 79 YGKALLALCLNAKGDAEWHVHADEVLARDADADAVAL 115 (153)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCHhHHHH
Confidence 554555554332222233 344566666645554433
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.80 E-value=2.6 Score=24.44 Aligned_cols=28 Identities=36% Similarity=0.372 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455555555566666666655555543
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.69 E-value=12 Score=31.16 Aligned_cols=82 Identities=15% Similarity=0.040 Sum_probs=53.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CCcHHHHHHHHHHHHhcCC
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC-SPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 286 (475)
-+.+.|| +.|.+.|-.+...+.--++.....|...|. ..+.+++..++....+....- .+|+..+..|...+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3445555 667777777776665545555544444444 567778888777766543222 5777788888888888888
Q ss_pred HHHHH
Q 011905 287 MKEAL 291 (475)
Q Consensus 287 ~~~a~ 291 (475)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 87775
No 307
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.68 E-value=9.3 Score=32.23 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDGLACSVMIRE 385 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~ 385 (475)
|.+.-++.+.+.+.+.+++...++-++.... |...-..+++.||-.|++++|..-++-.-.. ...+....|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455566777888899999888887776543 5566777888999999999998766655432 223445667777654
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.55 E-value=2.8 Score=23.10 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
|..+..+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44455555555555555555555543
No 309
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.44 E-value=9.6 Score=32.16 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 224 (475)
+..++.+.+.+..++++...++-.+.. +.|..+-..++..++-.|++++|..-++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 333444445555555555544443332 33334444455555555555555444443
No 310
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.21 E-value=21 Score=29.03 Aligned_cols=140 Identities=9% Similarity=-0.017 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHh-HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHh-hHHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI-IYNN 169 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~ 169 (475)
.+...|...+. +...+..++|+.-|..+.+.|..--+.. .--......+.|+...|+..|+++-.....|-.. -...
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 56677766664 4667888999999999998875432221 1123346778899999999999987653333332 1111
Q ss_pred H--HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011905 170 V--IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 170 l--l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 232 (475)
| .-.+...|.++....-.+.+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1 22466789999999999988766644444555677778889999999999999987754333
No 311
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.00 E-value=2.4 Score=29.09 Aligned_cols=48 Identities=4% Similarity=-0.125 Sum_probs=29.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011905 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
...+.++|+..|+...+.-..++.--.++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777776665444333344556666677777777776655
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.88 E-value=3.2 Score=22.82 Aligned_cols=30 Identities=13% Similarity=-0.158 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+|..+...|...|++++|.+.|++.++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 357778888888999999999988887653
No 313
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.65 E-value=14 Score=32.44 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=40.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH-----
Q 011905 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC----- 210 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----- 210 (475)
|.+++..+++.+++...-+--+.--+........-|-.|.+.|.+..+.++-.......-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 556666666666655443332211112223333444455666666666665555544211222233444444332
Q ss_pred hcCCHHHHHHHH
Q 011905 211 NAGRLEDACGLF 222 (475)
Q Consensus 211 ~~~~~~~a~~~~ 222 (475)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 345555555544
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.49 E-value=32 Score=30.59 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=65.3
Q ss_pred CCCCCHhhHHHHHHHHHhc-CChhHHHHHHHHhccCCCCCC-----------------hhhHHHHHHHHHhcCCHHHHHH
Q 011905 159 DLRPDTIIYNNVIRLFCEK-GDMIAADELMKGMGLIDLYPD-----------------IITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 159 ~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~~~-----------------~~~~~~li~~~~~~~~~~~a~~ 220 (475)
+++-|..-|-..++..-.. -.++++.++....+.. .-|+ ..+++...+.|..+|.+.+|.+
T Consensus 222 ~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~ 300 (361)
T COG3947 222 LPKYDVQEYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQ 300 (361)
T ss_pred CccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3555666666666554432 2355666665555321 1111 1123445567888999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011905 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
+.+...... +.+...+..++..+...|+--.|.+-++.+.
T Consensus 301 l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 301 LHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 998888764 4577888889999999998777776666554
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.73 E-value=3.7 Score=22.48 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
+..+...+...|++++|++.|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444445555555555555555544
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.47 E-value=9 Score=34.62 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=33.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
+-|.+.|++++|.+.|..-+..... +.+++..-..+|.+..++..|..-....+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4567777777777777666554321 45556666667777777766665555544
No 317
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.11 E-value=0.8 Score=36.22 Aligned_cols=84 Identities=6% Similarity=-0.051 Sum_probs=50.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++ .. +..-...++..|.+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~------~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS------NNYDLDKALRLCEKH 83 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS------SSS-CTHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc------cccCHHHHHHHHHhc
Confidence 556666667777777777777765545556677777777777766666666655 11 111123455566666
Q ss_pred CCHHHHHHHHHHH
Q 011905 427 NHSVEAAKLARFM 439 (475)
Q Consensus 427 g~~~~A~~~~~~m 439 (475)
|.+++|.-++.++
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 7777777666554
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.99 E-value=23 Score=27.95 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=29.8
Q ss_pred cCChhHHHHHHHHHHhcCC-ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 011905 107 KQNPSIIIDVVEAYKEEGC-VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 158 (475)
..+++.+..+++.|+-... .+...+|. .-.+.+.|++.+|..+|+...+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 5667777777777665421 12222222 23556777777777777777764
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.93 E-value=0.86 Score=36.04 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=39.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh
Q 011905 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 181 (475)
..+...+.+......++.+...+...+....+.++..|++.++.++...+++.... .-...+++.|.+.|.++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTSHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcchHH
Confidence 33444455555555555555544444555566666666666554555555542211 11233444444445555
Q ss_pred HHHHHHHHh
Q 011905 182 AADELMKGM 190 (475)
Q Consensus 182 ~a~~~~~~m 190 (475)
.|.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 544444443
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.87 E-value=54 Score=31.41 Aligned_cols=130 Identities=6% Similarity=-0.079 Sum_probs=85.3
Q ss_pred HHHHHHHhhhCCCChHHHH-HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHH
Q 011905 60 TCVIEVLHRCFPSQSQMGI-RFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL 138 (475)
Q Consensus 60 ~~~~~~l~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 138 (475)
+.-.++-+.+..++...|- ++|.-...+++.+ ........+....|+++.+...+....+. +.....+...+++.
T Consensus 291 ~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p---~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~ 366 (831)
T PRK15180 291 EITLSITKQLADGDIIAASQQLFAALRNQQQDP---VLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRS 366 (831)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCc---hhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHh
Confidence 3444555666566665554 4555555555543 33333344566678899998888775442 34456778888998
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 011905 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 194 (475)
....|++++|...-+.|....++ +.+......-..-..|-++++.-.|+++...+
T Consensus 367 ~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 367 LHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88999999999999998876664 45544444444445677888888888876544
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.66 E-value=66 Score=32.29 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=9.0
Q ss_pred hcCCHHHHHHHHHhccc
Q 011905 141 KARLANEAMWVLRKMPE 157 (475)
Q Consensus 141 ~~~~~~~A~~~~~~m~~ 157 (475)
...+.+.|+..|+.+.+
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 44455555555555544
No 322
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.33 E-value=29 Score=27.90 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=5.1
Q ss_pred cCCHHHHHHHHHH
Q 011905 284 KGMMKEALGILDR 296 (475)
Q Consensus 284 ~g~~~~a~~~~~~ 296 (475)
.|++.+|..+|++
T Consensus 57 r~~w~dA~rlLr~ 69 (160)
T PF09613_consen 57 RGDWDDALRLLRE 69 (160)
T ss_pred hCCHHHHHHHHHH
Confidence 3333333333333
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.23 E-value=59 Score=31.50 Aligned_cols=179 Identities=10% Similarity=0.052 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011905 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 172 (475)
+....-+++.+++..-++..+..+..+|..-| -+--.|..++..|...+ .++-..+|+++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~-n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENG-NEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcC-chhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445567778887778888888888887765 34566777888888874 57788888888876652 4444444555
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHh
Q 011905 173 LFCEKGDMIAADELMKGMGLIDLYP-----DIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICR 246 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~ 246 (475)
.|-+ ++.+.+..+|.+....-++. -...|..+.... ..+.+..+.+...+.. .|...-...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 77788888887776543221 112344444321 3456666666666654 3444445566666677777
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011905 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
..++++|++++..+.+.+ ..|..+-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d---~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD---EKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc---chhhhHHHHHHHHH
Confidence 888888888888887743 34555555555544
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.23 E-value=74 Score=32.58 Aligned_cols=151 Identities=13% Similarity=0.027 Sum_probs=88.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCcc---CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc
Q 011905 101 CEMSRIKQNPSIIIDVVEAYKEEGCVV---SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 177 (475)
++.+...+.+++|+++.+.... ..| -.......|..+.-.|++++|-...-.|.. -+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 4566677788888887766433 233 345667778888888999999888888865 3566666666666666
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----------------HCCCCcCHHHHHHH
Q 011905 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK-----------------RHGCAANLVAYSAL 240 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----------------~~g~~~~~~~~~~l 240 (475)
++......+ +....-..+...|..++..+.. .+...-.++..+.. +..-+ +...-..|
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~L 511 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVL 511 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHH
Confidence 655443332 2221112345566666666655 22222222211110 00001 22233457
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 011905 241 LDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+..|...+++..|.+++-...+
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHccChHHHHHHHHhccC
Confidence 8888888899998888776654
No 325
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.20 E-value=4 Score=24.50 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
|..+|...|+.+.|+++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555554
No 326
>PRK09687 putative lyase; Provisional
Probab=79.79 E-value=46 Score=29.91 Aligned_cols=235 Identities=14% Similarity=0.112 Sum_probs=128.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHhcCCCCCCcHH
Q 011905 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM----ERALELLGEMEKEGGDCSPNVV 272 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~ 272 (475)
+|.......+.++...|. +.+...+..+.+. +|...-...+.+++..|+. +++...+..+... .++..
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~----D~d~~ 106 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE----DKSAC 106 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc----CCCHH
Confidence 455555555566655554 3333333334332 3555555556666666653 4566666665332 25555
Q ss_pred HHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011905 273 TYTSVIQIFCGKGMM-----KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347 (475)
Q Consensus 273 ~~~~li~~~~~~g~~-----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 347 (475)
+-...+.++...+.. ..+...+..... .++...=...+.++.+.++ +.+...+-.+.+. ++...-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHH
Confidence 555555555554321 223333333332 2344444566666776666 3455555555542 233344444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011905 348 VVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 348 i~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
+.++.+.+ ....+...+..+.. .++...-...+.++.+.|+. .+...+-+..+.+ + .....+.++.+.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~-----~--~~~~a~~ALg~i 248 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG-----T--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC-----c--hHHHHHHHHHhc
Confidence 55555442 23456666666653 34666666777778887774 4555555544432 2 234677788888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011905 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 460 (475)
|.. +|...+..+.+.. +|..+-...++++.+
T Consensus 249 g~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 249 GDK-TLLPVLDTLLYKF--DDNEIITKAIDKLKR 279 (280)
T ss_pred CCH-hHHHHHHHHHhhC--CChhHHHHHHHHHhc
Confidence 875 6888888887754 477777766666543
No 327
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.74 E-value=59 Score=31.13 Aligned_cols=209 Identities=13% Similarity=0.099 Sum_probs=87.5
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHh--HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHh--hHHHHHHHHHhcCChh
Q 011905 106 IKQNPSIIIDVVEAYKEEGCVVSVKM--MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI--IYNNVIRLFCEKGDMI 181 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~g~~~ 181 (475)
..|+.+.+..++ +.|..|+... ..+.+..++..|+.+-+.-+++ .|..|+.. .....+...+..|+.+
T Consensus 11 ~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 11 LFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK----HGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred HhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCccccCCCcccHHHHHHHCCCHH
Confidence 345544443333 3455544322 2234455556666544333333 33333221 1122344556677776
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHhcCChHHHHHHHHH
Q 011905 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA--YSALLDGICRLGSMERALELLGE 259 (475)
Q Consensus 182 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~ 259 (475)
.+..+++.-....-..+..-. ..+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+.-+++.
T Consensus 83 ~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 83 AVEELLDLGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHHHHHcCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 665555432110000111111 2233334455543 4444455565544321 12334445556666554444332
Q ss_pred HHhcCCCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011905 260 MEKEGGDC-SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI---STLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 260 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~ 335 (475)
|..+ ..|..-++.+ ...+..|+.+ +.+.+.+.|..++...- .+++...+..|+.+ +.+.+.+.
T Consensus 158 ----g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ 224 (413)
T PHA02875 158 ----KACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKR 224 (413)
T ss_pred ----CCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHC
Confidence 2111 0122222222 2334445543 44445556655543221 23444344556554 34444555
Q ss_pred CCCCC
Q 011905 336 GSVSS 340 (475)
Q Consensus 336 ~~~~~ 340 (475)
|..++
T Consensus 225 gad~n 229 (413)
T PHA02875 225 GADCN 229 (413)
T ss_pred CcCcc
Confidence 65554
No 328
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.37 E-value=46 Score=29.68 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 332 (475)
....|..+|.+.+|.++-+.....+ +.+...+-.+++.+...|+--.+.+.++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444555555555555555554432 334444555555555555544444444443
No 329
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.13 E-value=46 Score=29.54 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 011905 310 STLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~~ 332 (475)
..++..+.+.|.+.+|..+.+.+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 45677788888888888766544
No 330
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.85 E-value=34 Score=30.23 Aligned_cols=89 Identities=10% Similarity=0.115 Sum_probs=57.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 318 (475)
.=|.+++..++|.+++...-+.-+....++|.+ ...-|-.|.+.+.+..+.++-..-.+..-.-+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 346788888888888887776665433444443 344455678888888888877766654222233347766666554
Q ss_pred -----cCCHHHHHHHH
Q 011905 319 -----EGNLDEAYQLI 329 (475)
Q Consensus 319 -----~~~~~~a~~~~ 329 (475)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 37888887776
No 331
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=78.10 E-value=9 Score=23.51 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=27.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011905 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
.-+.|-..++..++++|.+.|+..++..++.+++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34677778888888888888888888888776653
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.85 E-value=4 Score=22.08 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=8.9
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011905 349 VELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~ 368 (475)
.++.+.|+.++|.+.|++++
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 33444444444444444444
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.66 E-value=72 Score=30.99 Aligned_cols=169 Identities=12% Similarity=0.139 Sum_probs=90.3
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011905 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 162 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
.|....-+++..+..+-.+.-+..+-.+|...| -+-..|..++.+|... ..+.-..+++++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 344555566666666666666666666666544 3455566666666666 345566666666665433 333333344
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 011905 242 DGICRLGSMERALELLGEMEKEGGDCSPN---VVTYTSVIQIFCGKGMMKEALGILDRMEA-LGCAPNRVTISTLIKGFC 317 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~ 317 (475)
..|-+ ++.+.+...|.++..+-..-+.+ ...|.-++.. -..+.+..+.+...+.. .|...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 43333 66666666666665421100001 1234433321 12355555555555543 233333444555556666
Q ss_pred hcCCHHHHHHHHHHHHhCCC
Q 011905 318 VEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 318 ~~~~~~~a~~~~~~~~~~~~ 337 (475)
...++++|.+++..+.+++-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 217 ENENWTEAIRILKHILEHDE 236 (711)
T ss_pred cccCHHHHHHHHHHHhhhcc
Confidence 77777777777776666543
No 334
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.33 E-value=89 Score=31.87 Aligned_cols=399 Identities=13% Similarity=0.108 Sum_probs=191.6
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHH-----HHHHHHHHhcCChhHHHHHHHHHHhc----CCccCHHhHHHH-HHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMY-----NRACEMSRIKQNPSIIIDVVEAYKEE----GCVVSVKMMKVI-FNLC 139 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-i~~~ 139 (475)
.+.+.+.|...+........- ++...+ ..+++.+...+ +..|...++...+. +..+-...|..+ +..+
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~-~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~ 149 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTN-PKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLA 149 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 367788888776654322211 222211 12334444444 44487777775542 223334455554 3344
Q ss_pred HhcCCHHHHHHHHHhcccCC---CCCCHhhHHHHHHHHHh--cCChhHHHHHHHHhccCC---------CCCChhhHHHH
Q 011905 140 EKARLANEAMWVLRKMPEFD---LRPDTIIYNNVIRLFCE--KGDMIAADELMKGMGLID---------LYPDIITYVSM 205 (475)
Q Consensus 140 ~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~m~~~~---------~~~~~~~~~~l 205 (475)
...+++..|.+.++.+...- ..|-..++-.++.+... .+..+.+.+.++++.... ..|...+|..+
T Consensus 150 ~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ll 229 (608)
T PF10345_consen 150 LQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLL 229 (608)
T ss_pred HhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 44479999999998876531 23445555566665553 455666767666652211 23456677777
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHH-------CC----------CC-------------cCHHH---------HHHHHHH-
Q 011905 206 IKGFC--NAGRLEDACGLFKVMKR-------HG----------CA-------------ANLVA---------YSALLDG- 243 (475)
Q Consensus 206 i~~~~--~~~~~~~a~~~~~~m~~-------~g----------~~-------------~~~~~---------~~~ll~~- 243 (475)
++.++ ..|+++.+.+.++++.+ .. ++ +.... ..-++.+
T Consensus 230 l~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l 309 (608)
T PF10345_consen 230 LDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGL 309 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHH
Confidence 77654 56776666665554432 10 00 01111 1111222
Q ss_pred -HHhcCChHHHHHHHHHHHhc--------CCCCCCc------HHHHHHHHH---------HHHhcCCHHHHHHHHHHHHH
Q 011905 244 -ICRLGSMERALELLGEMEKE--------GGDCSPN------VVTYTSVIQ---------IFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 244 -~~~~g~~~~a~~~~~~~~~~--------~~~~~~~------~~~~~~li~---------~~~~~g~~~~a~~~~~~m~~ 299 (475)
++..|..++|.+++++..+. .....-+ ...|...+. ..+-.+++..|...++.|.+
T Consensus 310 ~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~ 389 (608)
T PF10345_consen 310 HNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQ 389 (608)
T ss_pred HHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 22334444555555443321 0000001 112222222 22357889999999998886
Q ss_pred cCC-CCC-----HHHHHHHHH--HHHhcCCHHHHHHHHH--------HHHhCCCCCChhhHHHH--HHHHHh--cCCHHH
Q 011905 300 LGC-APN-----RVTISTLIK--GFCVEGNLDEAYQLID--------KVVAGGSVSSGGCYSSL--VVELVR--TKRLKE 359 (475)
Q Consensus 300 ~~~-~p~-----~~~~~~li~--~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--i~~~~~--~g~~~~ 359 (475)
..- .|+ ...+...+. .+-..|+++.|...|. .....+...+..++..+ +-.+.. ....++
T Consensus 390 ~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~ 469 (608)
T PF10345_consen 390 LCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSE 469 (608)
T ss_pred HHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhh
Confidence 421 111 122222222 3345699999999997 44444544444443332 111222 222233
Q ss_pred --HHHHHHHHHHC-CCCC--CHHHHHHH-HHHHHhcC--CHHHHHHHHHHHHH-----cCCCCCCchhhHHHHHHHHHhc
Q 011905 360 --AEKLFSKMLAS-GVKP--DGLACSVM-IRELCLGG--QVLEGFCLYEDIEK-----IGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 360 --A~~~~~~m~~~-~~~p--~~~~~~~l-i~~~~~~g--~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~ 426 (475)
+.++++.+... .-.| +..++..+ +.++.... ...++...+.+..+ .+... .-..+++.+...+. .
T Consensus 470 ~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~-l~~~~L~lm~~~lf-~ 547 (608)
T PF10345_consen 470 SELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ-LLAILLNLMGHRLF-E 547 (608)
T ss_pred hHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHH-c
Confidence 66677665431 1122 23333333 33333222 12244444333222 11100 01122333333333 6
Q ss_pred CCHHHHHHHHHHHHHcCCCC---ChhhH-----HHHHHHHHhcCCHhHHhhccc
Q 011905 427 NHSVEAAKLARFMLKKRIWL---QGPYV-----DKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~~~~---~~~~~-----~~l~~~~~~~g~~~~a~~l~~ 472 (475)
|+..+..+..........+. ....| ..+...+...|+.++|..+.+
T Consensus 548 ~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~ 601 (608)
T PF10345_consen 548 GDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQ 601 (608)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888766655544322122 33444 245556888899999987654
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.21 E-value=3.7 Score=22.21 Aligned_cols=28 Identities=14% Similarity=0.014 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 416 HSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+-.+..++.+.|++++|.+.|+++++.-
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3345667777888888888888887653
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.15 E-value=7 Score=23.47 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=9.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 011905 206 IKGFCNAGRLEDACGLFKVMK 226 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~ 226 (475)
..+|...|+.+.|.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 334444444444444444444
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.71 E-value=8.1 Score=21.10 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555556666666666666665544
No 338
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.45 E-value=36 Score=26.87 Aligned_cols=80 Identities=11% Similarity=0.121 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCC-----CCCHhhHHHHHHHHHhcCC-hhHHHHHHHHhccCCCCCChhhHHHH
Q 011905 132 MKVIFNLCEKARLANEAMWVLRKMPEFDL-----RPDTIIYNNVIRLFCEKGD-MIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 132 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~l 205 (475)
.|.++......+.+...+.+++.+..... ..+...|+.++.+.++..- ---+..+|+-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444444455555555555554421100 1233344555555443333 22334444444444444455555555
Q ss_pred HHHHHh
Q 011905 206 IKGFCN 211 (475)
Q Consensus 206 i~~~~~ 211 (475)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 554443
No 339
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.31 E-value=15 Score=27.90 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011905 110 PSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 171 (475)
--+..+.++.+....+.|++......+++|.+-+++..|..+|+-++.. +.+....|..++
T Consensus 65 ~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 65 GWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 3455667778888888999999999999999999999999999988754 223333455544
No 340
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.29 E-value=14 Score=25.33 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=34.0
Q ss_pred HHHHHcCCCCCCchhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011905 400 EDIEKIGFLSSVDSDIHS-VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+++....+.|..+..-|+ ++++-+.++.--++|+++++-|.+.| ..++..-+.+
T Consensus 17 ~eleg~~l~~~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 17 KELEGIRLEPKIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred HHhhcccccccCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 333333344444444454 45566677888888999999888888 6666655443
No 341
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.28 E-value=1e+02 Score=32.14 Aligned_cols=225 Identities=14% Similarity=0.064 Sum_probs=118.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHH-------HHHHHHH-HHHhcCChHHHHHHHHHHHhcC--CCCCCcHHHHHHHHHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLV-------AYSALLD-GICRLGSMERALELLGEMEKEG--GDCSPNVVTYTSVIQI 280 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~-------~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~~li~~ 280 (475)
...++.+|..++.++...-..|+.. .++.+-. .....|++++|+++.+.....= ....+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4678889988888776542222221 2232221 2334688999999888877631 0112345566677778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHhcCC--HHHHHHHHHHHHhCC--CC----CChhhHHHH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLI-----KGFCVEGN--LDEAYQLIDKVVAGG--SV----SSGGCYSSL 347 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-----~~~~~~~~--~~~a~~~~~~~~~~~--~~----~~~~~~~~l 347 (475)
..-.|++++|..+..+..+..-.-+...|.... ..+...|. ..+.+..|....... -. +-..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 888899999999887766542223333332222 23445563 233333333332221 01 112334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCchhhHHHH
Q 011905 348 VVELVRTKRLKEAEKLFSKML----ASGVKPDGLAC--SVMIRELCLGGQVLEGFCLYEDIEKIGFLS--SVDSDIHSVL 419 (475)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~l 419 (475)
..++.+ .+.+..-...-. .....|-...+ ..|+......|+.++|...++++......+ .++..+-...
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 444444 333333222222 22222222222 256677788899999999999988764433 2222222222
Q ss_pred HHHH--HhcCCHHHHHHHHHH
Q 011905 420 LLGL--CRKNHSVEAAKLARF 438 (475)
Q Consensus 420 i~~~--~~~g~~~~A~~~~~~ 438 (475)
+... ...|+..+|.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 3222 256788877777665
No 342
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=75.98 E-value=86 Score=31.02 Aligned_cols=186 Identities=13% Similarity=0.040 Sum_probs=109.8
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011905 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
++..+|...+.--.+.|+.+.+.-+|+.+.-. |..=...|--.+...-..|+.+-|..++....+--++-.+.+--.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~---cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP---CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH---HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 35567888888888899999999999888751 222233444444444555888888888776665433333322222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHH---
Q 011905 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELVRTKRLKEAE---KLFSKMLASGVKPDGLACSVMIR--- 384 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~--- 384 (475)
-....-..|+++.|..+++.+...- |+. ..-..=+....+.|..+.+. .++....+... +......+.-
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFA 447 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHH
Confidence 2222345689999999999988764 332 11122233445667777777 33333332211 1122222221
Q ss_pred --HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC
Q 011905 385 --ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427 (475)
Q Consensus 385 --~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 427 (475)
.+.-.++.+.|..++.++.+.. +.+...|..+++.....+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~~---~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDIL---PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcC---CccHHHHHHHHHHHHhCC
Confidence 1334578889999999888864 236667777777666554
No 343
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.96 E-value=46 Score=27.89 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=58.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 011905 315 GFCVEGNLDEAYQLIDKVVAGGSVSSG----GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLG 389 (475)
Q Consensus 315 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 389 (475)
-+.+.|++++|..-|.+.+..-..... ..|..-..++.+.+.++.|++-..+.++. .|+ ......-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHhh
Confidence 467788888888888888775332222 23444456677788888888877777755 342 12222223456777
Q ss_pred CCHHHHHHHHHHHHHcC
Q 011905 390 GQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~ 406 (475)
..+++|+.-|+.+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 78888888888888764
No 344
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=75.94 E-value=28 Score=25.91 Aligned_cols=49 Identities=18% Similarity=0.068 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCC
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK-----RIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~ 463 (475)
-|..++..|...|..++|++++.+..+. .-++.......+++.+.+.|.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
Confidence 3788888888888888888888888771 111222223334666666653
No 345
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=75.31 E-value=62 Score=29.06 Aligned_cols=173 Identities=14% Similarity=0.190 Sum_probs=83.1
Q ss_pred CCChhhHHHHHH-HHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHH
Q 011905 196 YPDIITYVSMIK-GFCNAGR-LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT 273 (475)
Q Consensus 196 ~~~~~~~~~li~-~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (475)
.|....++.|.+ .+.+.|- ..-|.++|+...... ..+.++..+-+.+.-+.-+++| ||+-.+
T Consensus 162 t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek------~i~~lis~Lrkg~md~rLmeff----------Ppnkrs 225 (412)
T KOG2297|consen 162 TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK------DINDLISSLRKGKMDDRLMEFF----------PPNKRS 225 (412)
T ss_pred CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc------cHHHHHHHHHhcChHhHHHHhc----------CCcchh
Confidence 445555555543 2333332 334556666555321 2344555555544433333332 566666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHH
Q 011905 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG----GCYSSLVV 349 (475)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~ 349 (475)
-......+...|--+-..-.-.++-. | .-...-..|..-..+...+++......+-.++.-.|+. ..|..+++
T Consensus 226 ~E~Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMs 302 (412)
T KOG2297|consen 226 VEHFAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMS 302 (412)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhH
Confidence 55555555555532221111111110 0 00111233444445555677766666554444444554 35777776
Q ss_pred HHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 350 ELVRTKRLK-EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 350 ~~~~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
+-.-+.+-+ -|.+.++.+ .+|..|+.+++..|+.+..+
T Consensus 303 aveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 303 AVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHHHH
Confidence 654442221 123333333 46788888888888877654
No 346
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=75.26 E-value=15 Score=29.15 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011905 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (475)
.+.+.+.+.|++.++. -..++..+.+.++.-.|.++++++.+.+.+.+..|....+..+.+.|-.
T Consensus 7 ~~~~~lk~~glr~T~q---R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQ---RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHH---HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3455666777765432 3556677777777788888888888888777788877778888877744
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.76 E-value=5.2 Score=20.60 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 011905 418 VLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~ 436 (475)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555544
No 348
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.66 E-value=59 Score=28.57 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=33.2
Q ss_pred CCccCHHhHHHHHHH-HHhcCCHHHHHHHHHhcccCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHhc
Q 011905 124 GCVVSVKMMKVIFNL-CEKARLANEAMWVLRKMPEFDLRPD---TIIYNNVIRLFCEKGDMIAADELMKGMG 191 (475)
Q Consensus 124 ~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 191 (475)
+-.||+..=|..-.+ -.+...+++|+.-|++..+..-... -.....++....+.|++++..+.+.+|.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 345555444433321 1123356666666666655321111 2233445556666666666666666553
No 349
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.46 E-value=94 Score=30.76 Aligned_cols=359 Identities=9% Similarity=0.009 Sum_probs=205.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHH-HhcCCHHHHHHHHHhcccC-CC-CCCHh
Q 011905 89 SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC-EKARLANEAMWVLRKMPEF-DL-RPDTI 165 (475)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~-~~-~~~~~ 165 (475)
.|+--...|..+...=.+.|..+.+.++|+...+ +++.+...|...+..+ ...|+.+.....|+...+. |. -.+..
T Consensus 74 kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~ 152 (577)
T KOG1258|consen 74 KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDP 152 (577)
T ss_pred hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccH
Confidence 3444444566677777888999999999999877 5677888887777643 4567778888888887653 21 13455
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH---hc------CCHHHHHHHHHHHHHC----CCCc
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC---NA------GRLEDACGLFKVMKRH----GCAA 232 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---~~------~~~~~a~~~~~~m~~~----g~~~ 232 (475)
.|...|.--...+++.....++++.++. | ..-|+....-|. .. ...+++.++-...... ...+
T Consensus 153 lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~ 228 (577)
T KOG1258|consen 153 LWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQE 228 (577)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccC
Confidence 7888888888888999999999998752 2 222222222221 11 2233333332222210 0000
Q ss_pred CHHHHHH-----------------HH--------HHHHhcCChHHHHHHHHHHHhcC-CCC----CCcHHHHHHHHHHHH
Q 011905 233 NLVAYSA-----------------LL--------DGICRLGSMERALELLGEMEKEG-GDC----SPNVVTYTSVIQIFC 282 (475)
Q Consensus 233 ~~~~~~~-----------------ll--------~~~~~~g~~~~a~~~~~~~~~~~-~~~----~~~~~~~~~li~~~~ 282 (475)
....... ++ .++-..-...+..-.|+.-.++. ..+ +++..+|...+.--.
T Consensus 229 ~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i 308 (577)
T KOG1258|consen 229 PLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEI 308 (577)
T ss_pred hhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhh
Confidence 1111111 11 11111222222333333333211 111 235667888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHH
Q 011905 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV--SSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A 360 (475)
..|+.+.+.-+|++..-. +..=...|-..++-....|+.+-|..++....+--.+ |......+.+ .-..|+++.|
T Consensus 309 ~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A 385 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDA 385 (577)
T ss_pred hcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHH
Confidence 899999999988887532 1111223333344444458888888777665543332 2222222222 2356799999
Q ss_pred HHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHH---HHHHHHHcCCCCCCchhhHHHHHHHHH-----hcCCHHH
Q 011905 361 EKLFSKMLASGVKPDGLAC-SVMIRELCLGGQVLEGFC---LYEDIEKIGFLSSVDSDIHSVLLLGLC-----RKNHSVE 431 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~---~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~g~~~~ 431 (475)
..+++.....- |+..-. ..-+....+.|+.+.+.. ++....... .+......+..-+. -.++.+.
T Consensus 386 ~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~----~~~~i~~~l~~~~~r~~~~i~~d~~~ 459 (577)
T KOG1258|consen 386 KVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK----ENNGILEKLYVKFARLRYKIREDADL 459 (577)
T ss_pred HHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc----cCcchhHHHHHHHHHHHHHHhcCHHH
Confidence 99999988762 554322 222334567788888773 333333221 13344444444443 3578999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011905 432 AAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 432 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
|..++.++.+.- +++...|..+++.....+
T Consensus 460 a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 460 ARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 999999998875 777777777777666555
No 350
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.44 E-value=50 Score=27.56 Aligned_cols=86 Identities=15% Similarity=0.055 Sum_probs=40.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011905 280 IFCGKGMMKEALGILDRMEALGCAPNRVTIS-----TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
.+...|++++|..-++..... |....+. .|.+.....|.+|+|+..++.....++.+ .....-.+.+...
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~k 172 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAK 172 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHc
Confidence 444555666666555544432 1112222 22334445555666666555554444322 1122223445555
Q ss_pred CCHHHHHHHHHHHHHC
Q 011905 355 KRLKEAEKLFSKMLAS 370 (475)
Q Consensus 355 g~~~~A~~~~~~m~~~ 370 (475)
|+-++|..-|++..+.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 6666666666555544
No 351
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.86 E-value=42 Score=26.48 Aligned_cols=81 Identities=10% Similarity=0.146 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----VSSGGCYSSLVVELVRTKR-LKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.+.++......+++.....+++.+..-.. ..+...|.+++.+..+..- --.+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45666666666666666666665532110 1234557777777755554 33456677777776777777888888
Q ss_pred HHHHHhc
Q 011905 383 IRELCLG 389 (475)
Q Consensus 383 i~~~~~~ 389 (475)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8776554
No 352
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.35 E-value=1.2e+02 Score=31.29 Aligned_cols=154 Identities=13% Similarity=0.077 Sum_probs=90.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 011905 136 FNLCEKARLANEAMWVLRKMPEFDLRP---DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 212 (475)
|+-+.+.+.+++|+++-+.-... .| -...+...|..+.-.|+++.|-...-.|.. -+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 44566778899999988866542 33 345678888999999999999998888874 3566676666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--------------cCCCCCCcHHHHHHHH
Q 011905 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK--------------EGGDCSPNVVTYTSVI 278 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------------~~~~~~~~~~~~~~li 278 (475)
++......+ +.......+...|..++..+.. .+...-.+...+... +-.....+...-..|.
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 665443222 2222222456677777777665 222221111111100 0000011223334477
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 011905 279 QIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~ 299 (475)
..|...+++..|+.++-..++
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
Confidence 778888888888887766553
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.92 E-value=44 Score=31.95 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=44.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 323 (475)
....|+++.+...+...... +-....+..+++....+.|++++|..+-+.|....+. +...........-..|-++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~---~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI---IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh---hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHH
Confidence 44456666666555544331 1223344555556666666666666666555554443 2333322222333445556
Q ss_pred HHHHHHHHHHhCC
Q 011905 324 EAYQLIDKVVAGG 336 (475)
Q Consensus 324 ~a~~~~~~~~~~~ 336 (475)
++.-.|+++...+
T Consensus 409 ~~~~~wk~~~~~~ 421 (831)
T PRK15180 409 KSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccC
Confidence 6666665555443
No 354
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.49 E-value=78 Score=30.28 Aligned_cols=210 Identities=18% Similarity=0.123 Sum_probs=102.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH--HHHHHHHHHHh
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVA--YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV--TYTSVIQIFCG 283 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~ 283 (475)
..+..|+.+-+ +.+.+.|..|+... ..+.+...++.|+. ++.+.+.+.|. .|+.. .....+...+.
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~----~~v~~Ll~~ga--~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDS----EAIKLLMKHGA--IPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCH----HHHHHHHhCCC--CccccCCCcccHHHHHHH
Confidence 34456776554 44446787776543 23455556666664 35556666442 23321 11233555667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHH
Q 011905 284 KGMMKEALGILDRMEALGCAPNRV---TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC--YSSLVVELVRTKRLK 358 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~ 358 (475)
.|+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -...+...+..|+.+
T Consensus 78 ~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 78 EGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 788776555543 33221111 0122334445666654 4555556666554321 122344445677766
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHH
Q 011905 359 EAEKLFSKMLASGVKPD---GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
-+..+ .+.|..++ ..-.+.|..| +..|+.+ +.+.+.+.|..+.. +..-....+...+..|+.+
T Consensus 150 ~v~~L----l~~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~---- 216 (413)
T PHA02875 150 GIELL----IDHKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID---- 216 (413)
T ss_pred HHHHH----HhcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----
Confidence 54444 34454443 2334444444 4556654 44556666654321 1111123444344566653
Q ss_pred HHHHHHHcCCCCCh
Q 011905 435 LARFMLKKRIWLQG 448 (475)
Q Consensus 435 ~~~~m~~~~~~~~~ 448 (475)
+.+.+++.|..++.
T Consensus 217 iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHHCCcCcch
Confidence 45556677766654
No 355
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=72.34 E-value=58 Score=32.80 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
..-.-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.+.|+.+.+..+.+.+.+
T Consensus 406 ~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 406 DDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344556666666666666666665543321 223455556666666666665555555443
No 356
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=72.15 E-value=1.2e+02 Score=30.95 Aligned_cols=197 Identities=13% Similarity=0.074 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCccCHH--hHHHHHHHH-HhcCCHHHHHHHHHhcccCCCCCCHh--
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYK-EEGCVVSVK--MMKVIFNLC-EKARLANEAMWVLRKMPEFDLRPDTI-- 165 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~--~~~~li~~~-~~~~~~~~A~~~~~~m~~~~~~~~~~-- 165 (475)
.....|..++.. ++..++.+. +..++|..+ ++--+...+ ....+++.|...+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345567766654 455666666 444444333 333344443 36778888988888764432222221
Q ss_pred ---hHHHHHHHHHhcCChhHHHHHHHHhccCCCC----CChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCcCH
Q 011905 166 ---IYNNVIRLFCEKGDMIAADELMKGMGLIDLY----PDIITYVSM-IKGFCNAGRLEDACGLFKVMKRHG---CAANL 234 (475)
Q Consensus 166 ---~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g---~~~~~ 234 (475)
+...++..+.+.+... |...+++..+.--. +-...|..+ +..+...++...|.+.++.+...- ..|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234556666666555 88777776542111 112223333 222333478888888888776532 23444
Q ss_pred HHHHHHHHHHH--hcCChHHHHHHHHHHHhcCC-------CCCCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 011905 235 VAYSALLDGIC--RLGSMERALELLGEMEKEGG-------DCSPNVVTYTSVIQIFC--GKGMMKEALGILDRME 298 (475)
Q Consensus 235 ~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~ 298 (475)
.++..++.+.. +.+..+++.+.++++..... ...|...+|..+++.++ ..|+++.+...++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555444 34556667777766633211 12456667777766554 5667666666665553
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.04 E-value=13 Score=25.60 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=21.0
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHH
Q 011905 246 RLGSMERALELLGEMEKEGGDCSPN-VVTYTSVIQIFCGKGMMKEALGI 293 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~ 293 (475)
...+.++|+..|....+.-.. +++ -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555543211 111 22334445555555555554443
No 358
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.67 E-value=62 Score=27.03 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=60.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011905 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACS-----VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
...+...|++++|..-++..... |....+. .|.+.....|.+|+|+..++...+.+. .......-.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w----~~~~~elrGDi 168 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW----AAIVAELRGDI 168 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH----HHHHHHHhhhH
Confidence 45567778888888888776633 2222222 344556677888888888887777654 22445556677
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 011905 423 LCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+...|+-++|..-|.+.+..+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888888888888888888775
No 359
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.33 E-value=44 Score=25.55 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+..+-++.....++.|+.......+++|.+.+|+..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555555566777777777777777777777777777776654
No 360
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=68.74 E-value=74 Score=27.14 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
..+||.+.--+...|+++.|.+.|+...+....-+-...|.-|. +.-.|++.-|.+=+...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence 34555555555566666666666666555432222222222222 1223556655555544444
No 361
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.55 E-value=20 Score=23.43 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 416 HSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.-.+|.+|...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44556777777777777777666653
No 362
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.05 E-value=38 Score=30.86 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=32.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
.+-|.+.|.+++|+..|....... +.+.+++..-..+|.+...+..|..=-..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~---P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY---PHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC---CCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 466777777777777777665531 22666666666667766666555443333
No 363
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=68.00 E-value=1.2e+02 Score=29.40 Aligned_cols=283 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHH--
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEA-- 148 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A-- 148 (475)
....+.|.+++.-..+ .+...+...........+.+....++++..+. .|+...|+..|..|...-.....
T Consensus 264 ~~~~~laqr~l~i~~~-----tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~ 336 (568)
T KOG2396|consen 264 LLWDDLAQRELEILSQ-----TDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKR 336 (568)
T ss_pred ccHHHHHHHHHHHHHH-----hhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred ----HHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhc--CCHHHHHHHH
Q 011905 149 ----MWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA--GRLEDACGLF 222 (475)
Q Consensus 149 ----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~ 222 (475)
..+|+...+.+. .....+......+........+...-..+...++..|...|..-+....+. .---.-..++
T Consensus 337 I~h~~~~~~~~~~~~~-l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~ 415 (568)
T KOG2396|consen 337 ILHTMCVFRKAHELKL-LSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELF 415 (568)
T ss_pred HHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHH
Q ss_pred HHHHHCCCCcCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 223 KVMKRHGCAANLVAYSALL-DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 223 ~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
......-+.+....|+... ..+.+....+.....+..+.. +.....-+.++..+-..|-..+|..++..+...
T Consensus 416 n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~-----~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l- 489 (568)
T KOG2396|consen 416 NHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIG-----ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL- 489 (568)
T ss_pred HHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcC-----CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-
Q ss_pred CCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 302 CAPNRVTISTLIKG---FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 302 ~~p~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
.+|+...|..+++. ...+| +.-+...|+.+...-. .|+..|...+.-=...|+.+.+-.++.+..+
T Consensus 490 pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 490 PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG-ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC-CChHHHHHHHHhhccCCCcccccHHHHHHHH
No 364
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.91 E-value=42 Score=23.70 Aligned_cols=38 Identities=16% Similarity=0.349 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHh
Q 011905 426 KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (475)
.|+.+.|.+++..+. .| +..|..++.++.+-|..+.|.
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 344455555554444 22 234444455555544444443
No 365
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.08 E-value=11 Score=19.36 Aligned_cols=28 Identities=14% Similarity=-0.132 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.|..+...+...|++++|...++..++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4667777888888888888888877754
No 366
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.54 E-value=41 Score=27.65 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=12.0
Q ss_pred HHHhcCCHHHHHHHHHhccc
Q 011905 138 LCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~ 157 (475)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45666666666666666554
No 367
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.83 E-value=52 Score=24.00 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
+...|++++|..+.+.+. .||...|..|-. .+.|..+++..-+.+|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 444555555555544432 455554443322 23444444444444444443
No 368
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.44 E-value=86 Score=26.37 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=68.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011905 278 IQIFCGKGMMKEALGILDRMEALGCAPNR-----VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (475)
..-+.+.|++++|..-|.+.... +++.. ..|..-..++.+.+.++.|..-....++.+... ..+...-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHH
Confidence 34578899999999999998876 33332 334444557778899999988888887765432 222333345788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGL 377 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~ 377 (475)
+...+++|+.-|+++.+. .|...
T Consensus 180 k~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHh--CcchH
Confidence 889999999999999876 45443
No 369
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.44 E-value=50 Score=23.34 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=19.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 318 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
..|+.+.|.++++.+. +|... |..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~a----F~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGW----FSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcH----HHHHHHHHHHcCchhhh
Confidence 4455555555555555 44322 55555555555554433
No 370
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=63.41 E-value=95 Score=26.51 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=41.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
+.+||-|.--+...|+++.|.+.|+...+.+..-+-...|--|. +.-.|++.-|.+-+...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhc
Confidence 45788888888889999999999998876542212222222222 23457788887766666555
No 371
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.33 E-value=21 Score=23.33 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 379 CSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
--.+|.+|...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34456666666666666666666554
No 372
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=63.09 E-value=50 Score=23.22 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhccc
Q 011905 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 157 (475)
++|+.....|+..|+..|..+++...-+=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777778888888888777777666666677777776654
No 373
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.89 E-value=1e+02 Score=26.68 Aligned_cols=26 Identities=8% Similarity=-0.000 Sum_probs=16.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011905 313 IKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~~~~~~~~ 338 (475)
...-...+++.+|.++|+++......
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344556777777777777665443
No 374
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=62.56 E-value=87 Score=25.80 Aligned_cols=111 Identities=12% Similarity=0.105 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCH-HHHHHHHHHHHhcC--
Q 011905 322 LDEAYQLIDKVVAGGSVSSGG---CYSSLVVELVRTKRLKEAEKLFSKMLAS-----GVKPDG-LACSVMIRELCLGG-- 390 (475)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~-~~~~~li~~~~~~g-- 390 (475)
++.|.+..+.-...++. |.. -|...+.-+.+..+..++.+++++.... .+.|+. .++..+-.+|...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 45555555554443322 332 2333444444444444444444443321 345654 56666666666654
Q ss_pred --C-------HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 391 --Q-------VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 391 --~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+ +++|...|+...+. . |+..+|+.-+... ++|-++..++.+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~--~--P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDE--D--PNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhc--C--CCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 2 33344444444443 2 3667777666554 24666666666554
No 375
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=61.48 E-value=77 Score=31.84 Aligned_cols=90 Identities=22% Similarity=0.242 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCChH------HHHHHHHHHHhcCCCCCCcHHHHH
Q 011905 204 SMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLGSME------RALELLGEMEKEGGDCSPNVVTYT 275 (475)
Q Consensus 204 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 275 (475)
+|+.+|...|++..+.++++.+... |-+.=...||..++...+.|.++ .|.+.++... +.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~-----ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR-----LNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh-----cCCcchHHH
Confidence 7899999999999999999988764 33334567888888888888654 3444444443 235777888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 011905 276 SVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.++.+-..--+-.-..-++.++.
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHH
Confidence 77776554333333333444443
No 376
>PHA03100 ankyrin repeat protein; Provisional
Probab=61.44 E-value=1.4e+02 Score=29.16 Aligned_cols=251 Identities=14% Similarity=0.100 Sum_probs=113.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhH--HHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCcCHH---HHH
Q 011905 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY--VSMIKG-----FCNAGRLEDACGLFKVMKRHGCAANLV---AYS 238 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~-----~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~ 238 (475)
..+...++.|+.+-+..++ +.|..|+.... ...+.. ....|+.+ +.+.+.+.|..++.. ..+
T Consensus 37 t~L~~A~~~~~~~ivk~Ll----~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILL----DNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHHHHHHHH----HcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCc
Confidence 3445556677765544444 45656554322 223333 44445433 444555666554332 233
Q ss_pred HHHHHHH-hcCChHHHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHH
Q 011905 239 ALLDGIC-RLGSMERALELLGEMEKEGGDCS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI--STLIK 314 (475)
Q Consensus 239 ~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~ 314 (475)
.+..+.. ..|+.+-+..++ +.|..+. .+.... ..+...+..|. .-.++.+.+.+.|..++...- .+.+.
T Consensus 109 pL~~A~~~~~~~~~iv~~Ll----~~g~~~~~~~~~g~-t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~ 181 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEYLL----DNGANVNIKNSDGE-NLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLH 181 (480)
T ss_pred hhhHHHhcccChHHHHHHHH----HcCCCCCccCCCCC-cHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHH
Confidence 3333332 666655544443 3332211 122222 34444555552 123455556667766543321 23344
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhh--------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH
Q 011905 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGC--------YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG---LACSVMI 383 (475)
Q Consensus 315 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li 383 (475)
..+..|+.+ +++.+.+.|..++... +...+...+..|. ...++.+.+.+.|..++. .-.+.|.
T Consensus 182 ~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~ 255 (480)
T PHA03100 182 IAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLH 255 (480)
T ss_pred HHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 556666554 4444555665554221 1333334445555 113344445556655443 3344554
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 384 RELCLGGQVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
.| +..|+.+ +++.+.+.|..+.. +..-.+.+ ...++.++. ++++.+++.| ++.....
T Consensus 256 ~A-~~~~~~~----iv~~Ll~~gad~n~~d~~g~tpl-~~A~~~~~~----~iv~~Ll~~g--~~i~~i~ 313 (480)
T PHA03100 256 YA-VYNNNPE----FVKYLLDLGANPNLVNKYGDTPL-HIAILNNNK----EIFKLLLNNG--PSIKTII 313 (480)
T ss_pred HH-HHcCCHH----HHHHHHHcCCCCCccCCCCCcHH-HHHHHhCCH----HHHHHHHhcC--CCHHHHH
Confidence 44 4555544 44555566643211 11122233 222344443 4555566666 3444433
No 377
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.09 E-value=2e+02 Score=29.42 Aligned_cols=60 Identities=8% Similarity=-0.013 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC-------hhHHHHHHHHhccC
Q 011905 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD-------MIAADELMKGMGLI 193 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~m~~~ 193 (475)
=.+|-.|.|+|++++|.++.....+. .......+-..+..|+...+ -++...-|++..+.
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 35778899999999999999555442 23445566777777766532 23455556655543
No 378
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.74 E-value=50 Score=29.68 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (475)
.++|+.|.+.++.|.-..+..+.-.+.+.-.+.+.+.+|+.+... ..-|..++..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-------~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-------PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-------hhhhHHHHHHHHH
Confidence 467777888888888888887777777888888888888888763 2336666666653
No 379
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=60.12 E-value=1.3e+02 Score=27.53 Aligned_cols=62 Identities=18% Similarity=0.124 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS---GVKPDGLACS--VMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
....++...-+.++.++|+++++++.+. --.|+...|. ...+.+...|+.+++.+++++..+
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444555566677888888888887642 2356665554 344556677888888888888776
No 380
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.98 E-value=38 Score=20.74 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=14.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 383 (475)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444444445554444444444444433
No 381
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.64 E-value=1.6e+02 Score=27.83 Aligned_cols=94 Identities=10% Similarity=-0.021 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCcC
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH---------GCAAN 233 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------g~~~~ 233 (475)
..+.-+.+.|...|+++.|++.+.+.+..- ..-.+..|-.+|..-.-.|+|........+..+. .+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 356777888899999999999998855421 1223445666777777788888877777766554 12333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
...+..+.....+ ++..|.+.|-..
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 4444444444433 666666655433
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.53 E-value=56 Score=32.24 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=23.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
|...+.+.|....|..++.+..... ....-++..+.+++....++++|++.|++..+
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 3333444444444444444433322 22233334444444444444444444444443
No 383
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=59.44 E-value=1.3e+02 Score=27.14 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 238 SALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...+..+...|++..|++++.+..+
T Consensus 131 ~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 131 QSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445555566666666666655544
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.10 E-value=1.3e+02 Score=26.67 Aligned_cols=26 Identities=12% Similarity=0.002 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHH
Q 011905 233 NLVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
++.....+...|.+.|++.+|...|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56677778888888888888776553
No 385
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=59.05 E-value=1.2e+02 Score=26.11 Aligned_cols=98 Identities=16% Similarity=0.064 Sum_probs=48.1
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCC---CHhhH--HHHHHHHHhcCChhHHHHHHHHhccCCCCCChh
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP---DTIIY--NNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~---~~~~~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 200 (475)
.+...-+|.|+--|.....+.+|.+.|..- .|++| |..++ ..-|......|+.+.|++..+++-..-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 344444444444333333355555555432 22333 22222 344555667777777777777664433333432
Q ss_pred hHHHHHH----HHHhcCCHHHHHHHHHHH
Q 011905 201 TYVSMIK----GFCNAGRLEDACGLFKVM 225 (475)
Q Consensus 201 ~~~~li~----~~~~~~~~~~a~~~~~~m 225 (475)
.+-.|.. -..+.|..++|++..+.-
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3222221 134566677777766643
No 386
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=58.27 E-value=1.8e+02 Score=27.93 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
...|+.-|...|++.+|.+.++++---- -....++.+++.+.-+.|+-...+.++++.-
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPf---FhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf 570 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPF---FHHEVVKKALVMVMEKKGDSTMILDLLKECF 570 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCc---chHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3445555666666666655554432211 1133445555555555555544445444443
No 387
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.14 E-value=38 Score=26.01 Aligned_cols=44 Identities=7% Similarity=-0.050 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
.+..+|+.|..+|+-. .-...|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~-~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGT-KLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTST-TBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccH-HHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5555555555554432 2344455555555555555555555544
No 388
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.71 E-value=4e+02 Score=31.82 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..+|-...+....+|.++.|...+-...+.+ .| ..+--...-+...|+...|+.++++-++..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~----~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP----EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc----hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 3567777777777999999988877777765 22 456667777888999999999999988664
No 389
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.55 E-value=1.4e+02 Score=26.45 Aligned_cols=174 Identities=14% Similarity=0.077 Sum_probs=88.6
Q ss_pred CCCCCHhhHHHHHHH-HHhcCChhHHHHHHHHhccCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHC---CC-
Q 011905 159 DLRPDTIIYNNVIRL-FCEKGDMIAADELMKGMGLIDLYPDIIT---YVSMIKGFCNAGRLEDACGLFKVMKRH---GC- 230 (475)
Q Consensus 159 ~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~---g~- 230 (475)
+-.||+..-|..-.+ -.+...+++|+.-|++..+..-.....- ...++....+.+++++....|.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345665544432221 1233467777777777665322222332 334566677777777777777766532 11
Q ss_pred -CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-
Q 011905 231 -AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV----TYTSVIQIFCGKGMMKEALGILDRMEALGCAP- 304 (475)
Q Consensus 231 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p- 304 (475)
.-+....|.++.......+.+--.++|+.-...-.. ..+.. |-+-+...|...|.+.+..++++++.+..-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkd-AKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKD-AKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-hhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 123344566666555555555555555543321000 11111 12335556666666777777777666542111
Q ss_pred ---C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 305 ---N-------RVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 305 ---~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~ 333 (475)
| ...|..-|+.|....+-.....++++.+
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 1 2345555566666666666666666554
No 390
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=57.50 E-value=58 Score=25.78 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=18.1
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011905 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (475)
+.+.|..++.. -..+++.+...++.-.|.++++++.+.+...
T Consensus 12 lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~i 53 (145)
T COG0735 12 LKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGI 53 (145)
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCC
Confidence 33344443322 3334444444444444555555555444333
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.21 E-value=58 Score=23.34 Aligned_cols=71 Identities=11% Similarity=-0.128 Sum_probs=37.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCC-c-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHH
Q 011905 387 CLGGQVLEGFCLYEDIEKIGFLSSV-D-----SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDKIVEH 457 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~-~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~ 457 (475)
.+.|++..|.+.+....+....... . ....-.+.......|++++|.+.+++.++..- .-|..........
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4567777776555554443111000 1 11122234455678999999999998886432 2344444443333
No 392
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.19 E-value=2.7e+02 Score=29.68 Aligned_cols=116 Identities=9% Similarity=-0.000 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCC---CCCCHhhHHHHHHHHHhcCCh--hHHHHHHHHhccCCCCCCh------
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFD---LRPDTIIYNNVIRLFCEKGDM--IAADELMKGMGLIDLYPDI------ 199 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~m~~~~~~~~~------ 199 (475)
-|..|+..|...|+.++|+++|.+..+.. -..-...+-.+++-+-+.+.. +.++++-+...+....-..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 56677777777787788888877776521 011112233355555454443 4444443333322110000
Q ss_pred -----hhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011905 200 -----ITY-VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 200 -----~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
.+. ...+-.|......+-+...++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 001 11334566777788888888888876656677777888877765
No 393
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.09 E-value=23 Score=31.62 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
+..|....+.||+++|+++++|..+.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4555555555555555555555555554
No 394
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.05 E-value=1.5e+02 Score=26.62 Aligned_cols=26 Identities=0% Similarity=0.057 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
.++..+...|++.++.+.+.+...+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34455555555555555555544433
No 395
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.88 E-value=62 Score=27.04 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=16.5
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.|+..+|..++..+...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555555444
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.75 E-value=34 Score=28.61 Aligned_cols=32 Identities=9% Similarity=-0.156 Sum_probs=22.2
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhccc
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 157 (475)
.|+..+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777777777777777777777777666655
No 397
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=56.60 E-value=1.2e+02 Score=25.36 Aligned_cols=85 Identities=9% Similarity=0.063 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------CC----CC
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF--------LS----SV 411 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--------~~----~~ 411 (475)
|-.+.++-++.-+.+++-+.+- .++--+++-.|.+.-++.+++++++.|.+..+ .- .+
T Consensus 110 FceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~as 179 (233)
T PF14669_consen 110 FCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLAS 179 (233)
T ss_pred HHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCc
Confidence 6666666665545454333221 12223456667777788888888888776422 11 11
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 412 DSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
.-..-|.....+.+.|..|.|+.++++
T Consensus 180 rCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 180 RCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 344567777888899999999998874
No 398
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.17 E-value=76 Score=31.89 Aligned_cols=46 Identities=7% Similarity=0.045 Sum_probs=20.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc--CCccCHHhHHHHHHHHHhcCC
Q 011905 99 RACEMSRIKQNPSIIIDVVEAYKEE--GCVVSVKMMKVIFNLCEKARL 144 (475)
Q Consensus 99 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~ 144 (475)
.+++.|...|++..+.++++.+... |-..-...+|..|+...+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 3444444455555555555544432 112223344444444444444
No 399
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.46 E-value=26 Score=31.31 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=24.4
Q ss_pred CChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 011905 197 PDIIT-YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY 237 (475)
Q Consensus 197 ~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 237 (475)
||..+ |+..|....+.||+++|++++++..+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44333 456666667777777777777777766655333333
No 400
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=55.39 E-value=74 Score=26.20 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=6.1
Q ss_pred CcCHHHHHHHHHHH
Q 011905 231 AANLVAYSALLDGI 244 (475)
Q Consensus 231 ~~~~~~~~~ll~~~ 244 (475)
+|+..+|+.-+...
T Consensus 110 ~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 110 DPNNELYRKSLEMA 123 (186)
T ss_dssp -TT-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 45555555555443
No 401
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=54.86 E-value=1.7e+02 Score=26.82 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH-
Q 011905 310 STLIKGFCVEGNLDEAYQLIDKVVAG---GSVSSGGCY--SSLVVELVRTKRLKEAEKLFSKMLA-----SGVKPDGLA- 378 (475)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~- 378 (475)
..++...-+.++.++|.+.++++.+. .-.|+...| ..+..++...|+..++.+.+.+..+ .|+.|+..+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34445556677999999999998764 233454443 4556677789999999999988876 577775543
Q ss_pred HHHH
Q 011905 379 CSVM 382 (475)
Q Consensus 379 ~~~l 382 (475)
|..+
T Consensus 159 fY~l 162 (380)
T KOG2908|consen 159 FYSL 162 (380)
T ss_pred HHHH
Confidence 4433
No 402
>PRK12798 chemotaxis protein; Reviewed
Probab=54.63 E-value=2e+02 Score=27.39 Aligned_cols=158 Identities=12% Similarity=0.045 Sum_probs=100.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFC-VEGNLDEAYQLIDKVVAG--GSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
.|+..++.+.+..+.....++...-|-.|+.+-. ...+...|+++|+...-. |--........-+....+.|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 5888999999988887777778888888887654 456788999999887542 2222233445555667788998888
Q ss_pred HHHHHHHHHC-CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 361 EKLFSKMLAS-GVKPDGLACS-VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 361 ~~~~~~m~~~-~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
..+-.+.... ...|-..-|. .+..++.+.++-..- +.+..+... ..|..-...|-.+.+.-.-.|+.+-|...-++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7766655542 2234333232 233344444422222 223344332 12223567888888888889999999888888
Q ss_pred HHHcC
Q 011905 439 MLKKR 443 (475)
Q Consensus 439 m~~~~ 443 (475)
.+...
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 88764
No 403
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=54.25 E-value=1.8e+02 Score=26.78 Aligned_cols=77 Identities=4% Similarity=-0.127 Sum_probs=39.0
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh---cCChHHHHHHHH
Q 011905 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR---LGSMERALELLG 258 (475)
Q Consensus 182 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~ 258 (475)
.-+.++++..+.+ +.+...+..+|..+.+..+.++..+.++.+...... +...|...+..... .-.++...++|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3445555554443 344455555666666666666666666666655211 45555555544333 123444444444
Q ss_pred HH
Q 011905 259 EM 260 (475)
Q Consensus 259 ~~ 260 (475)
+.
T Consensus 127 ~~ 128 (321)
T PF08424_consen 127 KC 128 (321)
T ss_pred HH
Confidence 43
No 404
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=53.93 E-value=56 Score=24.31 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011905 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
.+++-+-++...++|+++++-|.+.| ..+...-+.|-..+.+.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~k 108 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKK 108 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 34555566677777777777777777 66666555555544443
No 405
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.63 E-value=97 Score=27.95 Aligned_cols=57 Identities=9% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
.++++.+.+.++.|.-.++..+.-.+.+.=.+.+++.+|+.+.. |..-|..++..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-------D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-------DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-------ChhhhHHHHHHHH
Confidence 34666666666777777776666666666667777777776665 2222555555554
No 406
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.56 E-value=1.5e+02 Score=25.77 Aligned_cols=120 Identities=11% Similarity=0.074 Sum_probs=68.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV-MIRELCLGGQVL 393 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~ 393 (475)
|.....++.|...|.+.+... |+. .-|..=+.++.+..+++.+..--.+.++. .||...-.. +-.++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 555567778888776666644 443 33555666777778888777766666643 566543333 334556677888
Q ss_pred HHHHHHHHHHHcC--CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 394 EGFCLYEDIEKIG--FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 394 ~a~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
.|...+.+..+.+ ..+++....+..|..+--..=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888887775431 112224445555555433223333444444443
No 407
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.06 E-value=93 Score=23.14 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77777777777777777777777765
No 408
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=52.70 E-value=4.8e+02 Score=31.24 Aligned_cols=309 Identities=13% Similarity=-0.004 Sum_probs=157.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhc----ccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011905 135 IFNLCEKARLANEAMWVLRKM----PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
+..+-.+++.+.+|+..++.- ++. ......|..+...|...+++|...-+...-.. .| .. ..-|....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~--sl-~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP--SL-YQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc--cH-HHHHHHHH
Confidence 344556778888888888883 221 11233444455588888888888777663111 12 22 23444556
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHH-HHHHHhcCCHHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV-IQIFCGKGMMKE 289 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 289 (475)
..|++..|..-|+.+.+.+ ++...+++-++......|.++.+....+-..... .+....|+.+ +.+--+.++++.
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~---se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR---SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc---CHHHHHHHHHHHHHHhhhcchhh
Confidence 7789999999999988875 2346677777777777788888777666555421 2333334332 333356677776
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH--HHHHHh--cCCHHHHHHHHHHHHhCCCCC---------ChhhHHHHHHHHHhcCC
Q 011905 290 ALGILDRMEALGCAPNRVTISTL--IKGFCV--EGNLDEAYQLIDKVVAGGSVS---------SGGCYSSLVVELVRTKR 356 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~l--i~~~~~--~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~ 356 (475)
...... .. +..+|... .....+ ..+.-.-.+..+.+.+.-+.| -...|..++....-..-
T Consensus 1537 ~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1537 LESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred hhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 666554 11 12222222 111111 122111222333333221111 01234444433322211
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH------HHHHHH---HHHhcCCHHHHH-HHHHHHHHc-CCCCCCchhhHHHHHHHHHh
Q 011905 357 LKEAEKLFSKMLASGVKPDGLA------CSVMIR---ELCLGGQVLEGF-CLYEDIEKI-GFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~------~~~li~---~~~~~g~~~~a~-~~~~~~~~~-~~~~~~~~~~~~~li~~~~~ 425 (475)
....+... ++.++..+ |..-+. .+.+..+.=.|. +.+...... +.. ..-..+|-...+..-.
T Consensus 1610 ----~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~-~~~ge~wLqsAriaR~ 1682 (2382)
T KOG0890|consen 1610 ----ENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLK-SRLGECWLQSARIARL 1682 (2382)
T ss_pred ----HHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcccccc-chhHHHHHHHHHHHHh
Confidence 11111111 22222211 111111 111111111111 111111111 221 1245678888888778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 426 KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+|+++.|...+-++.+.+ -+..+-.-...+...|+...|..+++
T Consensus 1683 aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq 1726 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQ 1726 (2382)
T ss_pred cccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHH
Confidence 999999998887777766 23444555777888899988887765
No 409
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.69 E-value=1.9e+02 Score=26.51 Aligned_cols=96 Identities=14% Similarity=-0.072 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCC--Cchhh
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLA----SGVKPDGLACSVMIR-ELCLGGQVLEGFCLYEDIEKIGFLSS--VDSDI 415 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~ 415 (475)
.+-.....||+.|+.+.|++.+++-.+ .|.+.|...+..=+. -|....-+.+-.+..+.+.+.|..-. ....+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 445555666777777666666554432 355555444333222 12222233344444444444443110 01223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 416 HSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
|..+- +....++.+|-.+|-+.+
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHc
Confidence 33221 123345666666655544
No 410
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.47 E-value=17 Score=28.08 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=19.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011905 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 315 (475)
..|.-..|..+|+.|.+.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345556677777777777777664 5555543
No 411
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.07 E-value=1.2e+02 Score=25.01 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=13.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 011905 241 LDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456666666666666666655
No 412
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=51.47 E-value=1.6e+02 Score=25.35 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=48.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCC---ChhhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 011905 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP---DIITYV--SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236 (475)
Q Consensus 162 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 236 (475)
++..-+|.|+--|.-...+.+|.+.|.. ..|+.| |..+++ .-|......|+.++|.+....+-..-+..|...
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 3444445554444444444444444432 233333 233332 345566777777777777666544333334322
Q ss_pred HHHHH----HHHHhcCChHHHHHHHHHHHh
Q 011905 237 YSALL----DGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 237 ~~~ll----~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+-.+. --..+.|..++|+++.+.-..
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 22221 124556667777777665443
No 413
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.33 E-value=1.9e+02 Score=26.19 Aligned_cols=175 Identities=14% Similarity=0.126 Sum_probs=85.9
Q ss_pred cCCccCHHhHHHHHH-HHHhcCC-HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh
Q 011905 123 EGCVVSVKMMKVIFN-LCEKARL-ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200 (475)
Q Consensus 123 ~~~~~~~~~~~~li~-~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 200 (475)
.| .|....++.|.. .+.+.|- ..-|.++|+..... ...+.++..+.+.+.-++-+++| +|+..
T Consensus 160 nG-t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmeff--------Ppnkr 224 (412)
T KOG2297|consen 160 NG-TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEFF--------PPNKR 224 (412)
T ss_pred CC-CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHhc--------CCcch
Confidence 35 666777777775 5555553 34577777765431 23467777776666555555554 66666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH----HHHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV----VTYTS 276 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~ 276 (475)
+-......+...|--+-..-.-.++.. | .-...-..|..-..+...+++......+-.+. .+ -|+. ..|..
T Consensus 225 s~E~Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~-~n-lPe~eVi~ivWs~ 299 (412)
T KOG2297|consen 225 SVEHFAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKR-NN-LPETEVIGIVWSG 299 (412)
T ss_pred hHHHHHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-cC-CCCceEEeeeHhh
Confidence 655555555544432211111111100 0 00111122333333444455555554433332 22 2443 34666
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 277 VIQIFCGKGM-MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 277 li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 326 (475)
++++---+.+ ---|.+.++. ..+|..|+.+++..|+.+-.+
T Consensus 300 iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 300 IMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHHHHH
Confidence 6655332211 1112333333 245788888888888877554
No 414
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.20 E-value=1.8e+02 Score=25.83 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=15.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011905 385 ELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~ 405 (475)
-|...+++..|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 355667888888877777654
No 415
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.32 E-value=1e+02 Score=30.53 Aligned_cols=103 Identities=12% Similarity=-0.113 Sum_probs=71.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
..|+...|.+.+.........-..+....|.+.+.+.|-..+|-.++.+...... ...-++..+.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~---sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS---SEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc---cCchHHHhcchhHHHHhhhHHH
Confidence 3578888888877766432111223455566667777888888888887777652 1446788888999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 433 AKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
++.|+++++.. +.++..-+.+...-+
T Consensus 696 ~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 99999999887 555555555444333
No 416
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.75 E-value=2.6e+02 Score=27.46 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=22.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 011905 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234 (475)
Q Consensus 198 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 234 (475)
+...+..++......+....|+.++.++.+.|..|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 4444555555555444556777777777777765543
No 417
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.24 E-value=2.5e+02 Score=26.64 Aligned_cols=93 Identities=6% Similarity=0.041 Sum_probs=61.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHhcccCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccC---------CCCCC
Q 011905 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFD--LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI---------DLYPD 198 (475)
Q Consensus 130 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---------~~~~~ 198 (475)
..+.-+...|..+|+++.|++.|.+..+.. .+..+..|-.+|..-.-.|+|.....+..+.... .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456667889999999999999999966532 1234456666777777888988887777776543 12333
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFKV 224 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~ 224 (475)
...+..+...+.+ ++..|.+.|-.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~ 254 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLL 254 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 4445555544443 56666655543
No 418
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.11 E-value=64 Score=21.37 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 460 (475)
..++.++..+++..-.++++.++.++...| ..+..+|-.-++.+.+
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445555555555555555666666666555 3445555444444443
No 419
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=47.94 E-value=1.1e+02 Score=22.45 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=39.0
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhH
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 202 (475)
.+...|++++|..+.+.+. .||...|-.|... +.|..+.+..-+..|...| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 5667888888888887773 4888887766543 5666666666666676655 4444444
No 420
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.65 E-value=78 Score=20.70 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=7.7
Q ss_pred hcCChhHHHHHHHHhc
Q 011905 176 EKGDMIAADELMKGMG 191 (475)
Q Consensus 176 ~~g~~~~a~~~~~~m~ 191 (475)
..|++-+|.++++++=
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3455555555555543
No 421
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.50 E-value=3.1e+02 Score=27.34 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=35.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 011905 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC-LGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~ 404 (475)
+..+.+.|-+..|+++.+-+......-|+.....+|+.|+ ++.+++-.++++++...
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3445567777777777777765543334555556666553 55667777777666644
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.38 E-value=23 Score=27.29 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=24.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
.+.|.-.+|..+|..|++.|-+||. |+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667788999999999988864 77777643
No 423
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=45.95 E-value=88 Score=23.31 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHH
Q 011905 88 SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL 138 (475)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 138 (475)
+||.|++. ..+.++...++|+++++-|.++| ..+...-+.|-..
T Consensus 61 sGy~PtVi------D~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~ 104 (128)
T PF09868_consen 61 SGYNPTVI------DYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSI 104 (128)
T ss_pred cCCCChHH------HHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 46666554 34566677788888888888877 5555444444333
No 424
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.72 E-value=1.3e+02 Score=24.55 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011905 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
++.-.|.++++.+.+.+..++..|....+..+.+.|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333344444444444444444444444444444444
No 425
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.56 E-value=2.8e+02 Score=26.58 Aligned_cols=140 Identities=18% Similarity=0.150 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHhc-CCCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 249 SMERALELLGEMEKE-GGDC-SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~-~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 326 (475)
..++...++...... +.++ ..+......++.. + .|+...++.+++.....+...+ .+...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~-s-~Gd~R~aln~Le~~~~~~~~It----------------~~~v~ 213 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARL-A-NGDARRALNLLELAALGVDSIT----------------LELLE 213 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHh-C-CCCHHHHHHHHHHHHHccCCCC----------------HHHHH
Confidence 356677777766542 1122 3344444444332 2 6778777777776654311111 22222
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHH
Q 011905 327 QLIDKVVAGGSVSSGGCYSSLVVELVR---TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-----VLEGFCL 398 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~ 398 (475)
+++...... ..........++.++.+ .++.+.|+..+..|.+.|..|....-..++.++-..|. ...|...
T Consensus 214 ~~~~~~~~~-~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~ 292 (413)
T PRK13342 214 EALQKRAAR-YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAA 292 (413)
T ss_pred HHHhhhhhc-cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHH
Confidence 222221111 11111223444555544 47899999999999999887775555555555544442 3344555
Q ss_pred HHHHHHcCC
Q 011905 399 YEDIEKIGF 407 (475)
Q Consensus 399 ~~~~~~~~~ 407 (475)
++.....|.
T Consensus 293 ~~~~~~~g~ 301 (413)
T PRK13342 293 ADAVERIGM 301 (413)
T ss_pred HHHHHHhCC
Confidence 666666664
No 426
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.81 E-value=1.4e+02 Score=22.91 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHhHHhhccccC
Q 011905 431 EAAKLARFMLKKRIWLQGP-YVDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 431 ~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~l~~~~ 474 (475)
+..++|..|..+||..... .|......+...|++..|.++.+.|
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 3566677777776654433 4556666677777777777766654
No 427
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.41 E-value=1.9e+02 Score=30.42 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=71.7
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..+...|+.+.|++.-.++ -+..+|..|.......|+.+-|+..|++.+. |+.|--.|.-.|+.+
T Consensus 651 ~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~e 715 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLE 715 (1202)
T ss_pred eeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHH
Confidence 3455566777776655544 2556777777777777777777777776553 223333344556666
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+..++.+..... -|..+. .. .-.-.|+.++-.+++...-. .| ..|- ....+|.-++|.++.++
T Consensus 716 KL~Km~~iae~r---~D~~~~--~q-nalYl~dv~ervkIl~n~g~-----~~--layl----ta~~~G~~~~ae~l~ee 778 (1202)
T KOG0292|consen 716 KLSKMMKIAEIR---NDATGQ--FQ-NALYLGDVKERVKILENGGQ-----LP--LAYL----TAAAHGLEDQAEKLGEE 778 (1202)
T ss_pred HHHHHHHHHHhh---hhhHHH--HH-HHHHhccHHHHHHHHHhcCc-----cc--HHHH----HHhhcCcHHHHHHHHHh
Confidence 655554443322 122111 11 11113666666666655433 11 1221 12346777888888887
Q ss_pred HHHc
Q 011905 297 MEAL 300 (475)
Q Consensus 297 m~~~ 300 (475)
....
T Consensus 779 ~~~~ 782 (1202)
T KOG0292|consen 779 LEKQ 782 (1202)
T ss_pred hccc
Confidence 7653
No 428
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.13 E-value=2.5e+02 Score=25.57 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHhcCCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011905 250 MERALELLGEMEKEGGD--CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 327 (475)
.+.|.+.|+.....+.. ...+......++....+.|+.+.-..+++..... .+..--..++.+.+-..+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 34555555555542111 0223333344444445555544433333333322 234444555555555556655566
Q ss_pred HHHHHHhCC
Q 011905 328 LIDKVVAGG 336 (475)
Q Consensus 328 ~~~~~~~~~ 336 (475)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 666655543
No 429
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=44.05 E-value=4.2e+02 Score=28.07 Aligned_cols=225 Identities=14% Similarity=0.038 Sum_probs=119.4
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCcCHHHHHHHHH
Q 011905 175 CEKGDMIAADELMKGMGLIDLYPDII-------TYVSMIK-GFCNAGRLEDACGLFKVMKRH----GCAANLVAYSALLD 242 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~-~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~ll~ 242 (475)
....++.+|..++.++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678888888888765432222221 2333322 233568899999888877653 23345666777788
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH-----HHHHhcCCHHH--HHHHHHHHHHc-----CC-CCCHHHH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI-----QIFCGKGMMKE--ALGILDRMEAL-----GC-APNRVTI 309 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~--a~~~~~~m~~~-----~~-~p~~~~~ 309 (475)
+..-.|++++|..+..+..+.. -.-++..+..+. ..+...|+... ....|...... .. .+-..++
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a--~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMA--RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888899999999887766531 122333333222 23445563322 22333332221 10 1122344
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHH
Q 011905 310 STLIKGFCVE-GNLDEAYQLIDKVVAGGSVSSGG--CYSSLVVELVRTKRLKEAEKLFSKMLASGV----KPDGLACSVM 382 (475)
Q Consensus 310 ~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~l 382 (475)
..++.++.+. +...++..-++--......|-.. .+..|+......|+.++|...++++..... .++...-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 5555555541 11122222222222222222222 223678888899999999999988875322 2333332333
Q ss_pred HHH--HHhcCCHHHHHHHHHH
Q 011905 383 IRE--LCLGGQVLEGFCLYED 401 (475)
Q Consensus 383 i~~--~~~~g~~~~a~~~~~~ 401 (475)
+.. ....|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 332 3456787777666555
No 430
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.94 E-value=59 Score=24.34 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=27.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011905 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 33444444555556666666666665566666666666666666433
No 431
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=43.85 E-value=1.6e+02 Score=23.10 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 374 PDGLACSVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++..+--.+..++.+.. +..+...+++++.+. -.|.........|..++.+.++++++.++.+.+++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 44444444444444443 455566677776652 1223344444455566677777777777777777654
No 432
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=43.28 E-value=1.7e+02 Score=23.94 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=26.8
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011905 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 298 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
.+.|+..+..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344555444333 233333333444455666666655554444444444444455444
No 433
>PRK09462 fur ferric uptake regulator; Provisional
Probab=43.07 E-value=1.5e+02 Score=23.55 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555544444444333444444444
No 434
>PRK10941 hypothetical protein; Provisional
Probab=42.98 E-value=2.5e+02 Score=25.12 Aligned_cols=78 Identities=8% Similarity=-0.072 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHH
Q 011905 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR-IWLQGPYVDKIVEH 457 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~ 457 (475)
.+.+-.+|.+.++++.|+++.+.+.... | .+..-+.--...|.+.|.+..|..=++..++.. -.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~--P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD--P-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3445556777777888877777777754 2 244445555556777777877777777776653 23444444444444
Q ss_pred HH
Q 011905 458 LK 459 (475)
Q Consensus 458 ~~ 459 (475)
+.
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 43
No 435
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=42.45 E-value=3.8e+02 Score=27.12 Aligned_cols=63 Identities=8% Similarity=-0.006 Sum_probs=42.2
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 011905 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 194 (475)
+....|..|++.+.... .+.-.++++++.. . + ...+..++++....|-......+.+.+....
T Consensus 308 ~~~~~f~~lv~~lR~~~-~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 308 PAAAKFLRLVRLLRTLS-EEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred chHHHHHHHHHHHHhCC-HHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 35667777777766555 5777777777654 1 1 5677888888888888766666666665544
No 436
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.13 E-value=2.9e+02 Score=25.75 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=25.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL----VVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~ 371 (475)
.+.++..-+...+..+.++.+.--..+|..| |.-.++.+..++|.+..-+|.+.|
T Consensus 288 ~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 288 TKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 3444555555555555444443333344433 122234455556666666665543
No 437
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.10 E-value=35 Score=22.59 Aligned_cols=31 Identities=10% Similarity=-0.017 Sum_probs=14.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLID 194 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 194 (475)
...++.++...++..-.+.++..+.+....|
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444444444444444444444444444
No 438
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=42.03 E-value=53 Score=17.15 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHHHc
Q 011905 391 QVLEGFCLYEDIEKI 405 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~ 405 (475)
+.+.+..+|+.+...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344455555555443
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.49 E-value=51 Score=31.20 Aligned_cols=28 Identities=4% Similarity=-0.115 Sum_probs=13.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 412 DSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
.+.+|..+.-+|.-.+++.+|.+.|...
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554443
No 440
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.43 E-value=3.3e+02 Score=26.15 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=15.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHH
Q 011905 212 AGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
..+.+.|+..+..|.+.|..|...
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 356677777777777766555433
No 441
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.77 E-value=1.3e+02 Score=21.44 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=14.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 011905 240 LLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+.......|++++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33445556777777776666654
No 442
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.75 E-value=2.8e+02 Score=25.22 Aligned_cols=109 Identities=12% Similarity=0.035 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 287 MKEALGILDRMEALGC----APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 362 (475)
.+.|.+.|+.....+. ..+...-..++....+.|+.+.-..+++...... +......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~---~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST---SPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS---THHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC---CHHHHHHHHHhhhccCCHHHHHH
Confidence 5677788877776422 2344455566666677777666555555555432 45557778888888888888888
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 011905 363 LFSKMLASG-VKPDGLACSVMIRELCLGGQV--LEGFCLYE 400 (475)
Q Consensus 363 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--~~a~~~~~ 400 (475)
+++.....+ +++.. ...++.++...+.. +.+.+++.
T Consensus 223 ~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHH
Confidence 888887653 44332 34444455433333 55555544
No 443
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.58 E-value=1.4e+02 Score=22.01 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcc
Q 011905 134 VIFNLCEKARLANEAMWVLRKMP 156 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~m~ 156 (475)
.++.-|...++.++|..-+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 34555566677777777776653
No 444
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.39 E-value=3.3e+02 Score=25.83 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=31.8
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChh--hHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 011905 173 LFCEKGDMIAADELMKGMGLIDLYPDII--TYVSMIKGFC--NAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~--~~~~~~~a~~~~~~m~~~ 228 (475)
.+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777777777777665 444443 3333444433 345667777777766553
No 445
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.34 E-value=4.7e+02 Score=28.43 Aligned_cols=62 Identities=6% Similarity=0.064 Sum_probs=31.3
Q ss_pred HHHHHhh-hCCCChHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHhc
Q 011905 62 VIEVLHR-CFPSQSQMGIRFFIWAALQSSY--RHSSFMYNRACEMS-RIKQNPSIIIDVVEAYKEE 123 (475)
Q Consensus 62 ~~~~l~~-~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~ 123 (475)
+...++. +...+...|+.+.+.....-++ -|++..|-.=+..+ ..-++.+-...++..+...
T Consensus 697 VL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E 762 (928)
T PF04762_consen 697 VLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE 762 (928)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc
Confidence 3444444 3567777777777665544333 24555444433333 3334545444445544443
No 446
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=39.84 E-value=3e+02 Score=25.25 Aligned_cols=100 Identities=20% Similarity=0.194 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCCcHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCH----
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKE--GGDCSPNVVTYTSVIQ-IFCGKGMMKEALGILDRMEALGCAPNR---- 306 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~---- 306 (475)
...+.....-||+.|+.+.|++.+.+-.+. +.|.+.|+..+.+-+. .|....-+.+-++..+.+.+.|...+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 345666778899999999999888766543 1345667666654333 334444455666666666666655443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 335 (475)
.+|..+- +....++.+|-.+|-+....
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 3444332 33456788888888776543
No 447
>PRK09857 putative transposase; Provisional
Probab=39.80 E-value=2.6e+02 Score=25.32 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 375 (475)
.++......++.++..++++.+.+. ..........+..-+.+.|.-+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444334445555555555555443 111222233444445555555556666666666665443
No 448
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=39.55 E-value=51 Score=24.94 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhH
Q 011905 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (475)
..++..+...+..-.|.++++.+.+.+...+..|.-..++.+.+.|-...
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 34555566666677788888888888877788877777888887775443
No 449
>PRK09857 putative transposase; Provisional
Probab=39.49 E-value=2.1e+02 Score=25.97 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
..++.-....++.++-.++++.+.+.. |. ......++..-+.+.|.-+++.++.++|+..|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~--~~-~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERS--PK-HKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhC--cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334443344555555555555555431 11 222333455555555666667777777777775443
No 450
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.53 E-value=1.9e+02 Score=25.32 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEK----EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
....+..-|.+.|++++|.++|+.+.. +|. ..+...+...+..++.+.|+.+..+.+--++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW-~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW-WSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334566667777777777777776642 221 1344555566677777777777776665444
No 451
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=38.49 E-value=2e+02 Score=28.46 Aligned_cols=87 Identities=10% Similarity=0.089 Sum_probs=46.7
Q ss_pred HHHHHHhhcCCCcHHHhhhhccCCCCHHHHHHHHhhh-----CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhc
Q 011905 33 ERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRC-----FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIK 107 (475)
Q Consensus 33 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (475)
..++.+|...|..+.-.+.+-.+.=-|.+ ++.+| ..=+.+.....+.....+.+...+...+..+.+. ..
T Consensus 137 NALLKTLEEPP~hV~FIlATTe~~Kip~T---IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~ 211 (515)
T COG2812 137 NALLKTLEEPPSHVKFILATTEPQKIPNT---ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA--AE 211 (515)
T ss_pred HHHhcccccCccCeEEEEecCCcCcCchh---hhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cC
Confidence 35555555555544444444333222222 44454 1223344455666666677777777766544432 34
Q ss_pred CChhHHHHHHHHHHhcC
Q 011905 108 QNPSIIIDVVEAYKEEG 124 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~ 124 (475)
|....+..+++++...|
T Consensus 212 Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 212 GSLRDALSLLDQAIAFG 228 (515)
T ss_pred CChhhHHHHHHHHHHcc
Confidence 56677777777776654
No 452
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=38.36 E-value=1e+02 Score=19.39 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=18.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 381 (475)
+.-++.+.|++++|.+..+.+++. .|+..-...
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHH
Confidence 444566677777777777666654 555444333
No 453
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.35 E-value=2.2e+02 Score=24.95 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 276 SVIQIFCGKGMMKEALGILDRMEAL----G-CAPNRVTISTLIKGFCVEGNLDEAYQLI 329 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~~~~~~a~~~~ 329 (475)
.+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3555666677777777777665311 1 1122233344444455555555444443
No 454
>PRK09462 fur ferric uptake regulator; Provisional
Probab=37.03 E-value=1.4e+02 Score=23.57 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcC
Q 011905 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178 (475)
Q Consensus 145 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 178 (475)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555555544443334444334444444444
No 455
>PRK11619 lytic murein transglycosylase; Provisional
Probab=37.02 E-value=4.9e+02 Score=26.86 Aligned_cols=343 Identities=7% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 011905 79 RFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158 (475)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 158 (475)
++-......++.+.....-......+.+.+++..... +.. ..+.+...-.....+....|+.++|......+=..
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~-~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLA-FSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHH-hcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------
Q 011905 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG--------- 229 (475)
Q Consensus 159 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------- 229 (475)
| .......+.++..+.+.|...... ++.+|...-...+...-..+.... ..+.....+.+..+.+..
T Consensus 159 g-~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l--~~~~~~~a~a~~al~~~p~~~~~~~~~ 234 (644)
T PRK11619 159 G-KSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAKQL--PADYQTIASALIKLQNDPNTVETFART 234 (644)
T ss_pred C-CCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhc--ChhHHHHHHHHHHHHHCHHHHHHHhhc
Q ss_pred CCcCHHHHHHHHHHHHhc--CChHHHHHHHHHH-HhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011905 230 CAANLVAYSALLDGICRL--GSMERALELLGEM-EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
+.++...-..++.++.+. .+.+.|...+... .............+..+.......+..+++...+...... ..+.
T Consensus 235 ~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~ 312 (644)
T PRK11619 235 TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQST 312 (644)
T ss_pred cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCc
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------------CCC-
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS------------GVK- 373 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------~~~- 373 (475)
.....-++.....++++.+...+..|....-. ...-..-+..++...|+.++|...|+.+... |..
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~ 391 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEY 391 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCC
Q ss_pred -------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 374 -------------PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 374 -------------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
.....-..-+..+...|+...|...|..+.+.. +......+.....+.|.++.++.....
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~-----~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 392 PLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASR-----SKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred CCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCHHHHHHHHhh
No 456
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=36.90 E-value=2.1e+02 Score=25.00 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------CC-----------CCch
Q 011905 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF------------LS-----------SVDS 413 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------------~~-----------~~~~ 413 (475)
+++|..+++..... ..+..+...+.-++...|+...+.++++.+..... .+ ..++
T Consensus 115 i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~v 192 (246)
T PF07678_consen 115 INKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDV 192 (246)
T ss_dssp HHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHH
T ss_pred HHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHH
Confidence 34555555554322 34555555555566667777777777777765310 00 0123
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
++-.-.+.++.+.++.+.+..+.+-+.++
T Consensus 193 EtTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 193 ETTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33333445566668999999998888875
No 457
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.87 E-value=1.9e+02 Score=22.15 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHhHHhhcccc
Q 011905 431 EAAKLARFMLKKRIWLQ-GPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 431 ~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
++.++|..|..+|+... +..|......+...|+++.|.++.+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56666666666655433 33445555666666666666665544
No 458
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=36.64 E-value=5.3e+02 Score=27.12 Aligned_cols=360 Identities=9% Similarity=-0.054 Sum_probs=175.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH---HHHhcCCHHHHHHHHHhcccCCCCCCHhhHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN---LCEKARLANEAMWVLRKMPEFDLRPDTIIYN 168 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 168 (475)
.+...+..++..+...++.+....--..|...- +.++..|..-+. .....+...++..+|++....-. ++..|.
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~ 187 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWE 187 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHH
Confidence 345566778889999999888877777776654 555666655554 23345777888888888776433 333333
Q ss_pred HHHHHHH-------hcCChhHHHHHHHHhccC-CCCCC--hhhHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 011905 169 NVIRLFC-------EKGDMIAADELMKGMGLI-DLYPD--IITYVSMI---KGFCNAGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 169 ~ll~~~~-------~~g~~~~a~~~~~~m~~~-~~~~~--~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
-.+.-+. +.++++....+|.+.... |...+ ...|..++ ..|..+-..+....++..-...++ |..
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~--D~~ 265 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL--DED 265 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc--hhh
Confidence 3333222 345667777777776542 22111 22233222 233333334556666665555542 222
Q ss_pred HHHHHHHHHHh-------cCChHHH-------HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 236 AYSALLDGICR-------LGSMERA-------LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 236 ~~~~ll~~~~~-------~g~~~~a-------~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
+-+.-+.--.+ ...++.| +..+++..+. .++--..|-.+|..+.+.|++-....+++++...-
T Consensus 266 ~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~---~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~ 342 (881)
T KOG0128|consen 266 TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK---EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM 342 (881)
T ss_pred hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc
Confidence 21111111111 1122222 2233333332 12344567777888888888776666666654321
Q ss_pred -CCCCH-------------------HHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCChh--------------hHHH
Q 011905 302 -CAPNR-------------------VTISTLIKGFCVEGNL-DEAYQLIDKVVAGGSVSSGG--------------CYSS 346 (475)
Q Consensus 302 -~~p~~-------------------~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~--------------~~~~ 346 (475)
..++. ..|..-++.|...|++ .++. ...+++-.+... .++.
T Consensus 343 ~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~ral----lAleR~re~~~vI~~~l~~~ls~~~~l~~~ 418 (881)
T KOG0128|consen 343 VLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRAL----LALERNREEITVIVQNLEKDLSMTVELHND 418 (881)
T ss_pred cccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHH----HHHHhcCcchhhHHHHHHHHHHHHHHHHHH
Confidence 11110 0111111111111111 1111 011111111111 1111
Q ss_pred HHHHHHhcC-------------CHHHHHHHHHHHHHCCCCCCHHH--HHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 347 LVVELVRTK-------------RLKEAEKLFSKMLASGVKPDGLA--CSVMIRE-LCLGGQVLEGFCLYEDIEKIGFLSS 410 (475)
Q Consensus 347 li~~~~~~g-------------~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~ 410 (475)
.......++ .+..|...|.+.... ..|..+ ....... +...++++.++.+|+.+...|..
T Consensus 419 ~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~--~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-- 494 (881)
T KOG0128|consen 419 YLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGD--QLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-- 494 (881)
T ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc--
Confidence 111111222 233444444444322 223222 2222121 24568999999999999887642
Q ss_pred Cchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHhHHh
Q 011905 411 VDSD-IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ--GPYVDKIVEHLKKSGDEELIT 468 (475)
Q Consensus 411 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~ 468 (475)
+.. .|-..+..-...|+...+..+++.....-..|+ -.++..+.+.-...|.++...
T Consensus 495 -~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 495 -SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred -hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHh
Confidence 222 455555555667999999998888887765554 234444455555556666543
No 459
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.09 E-value=5.6e+02 Score=27.27 Aligned_cols=108 Identities=13% Similarity=0.025 Sum_probs=67.9
Q ss_pred HhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHHcCCCCC
Q 011905 352 VRTKRLKEAEKLFSKMLAS------GVKPDGLACSVMIRELC---------------LGGQVLEGFCLYEDIEKIGFLSS 410 (475)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~---------------~~g~~~~a~~~~~~~~~~~~~~~ 410 (475)
...|++.+|.+.|+..+-. .-+-+..-...++..|+ ..+..+.+.++-.-+....+.|.
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 3578999999999887632 11122223333443331 12345555555555555566665
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHH
Q 011905 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY-VDKIVEHLK 459 (475)
Q Consensus 411 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~l~~~~~ 459 (475)
-...+....+..+.+.+++..|..+-+++++.+..|+..- -+.+..++.
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~e 1131 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAE 1131 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Confidence 5566677788899999999999999999999885555443 344444433
No 460
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.81 E-value=3.5e+02 Score=26.93 Aligned_cols=35 Identities=6% Similarity=0.153 Sum_probs=21.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 011905 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233 (475)
Q Consensus 198 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 233 (475)
+......++.++.. ++.+.++.+++++...|..|.
T Consensus 245 ~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 245 EPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 34444445555433 677777777777777776654
No 461
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=35.76 E-value=4e+02 Score=26.50 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 233 (475)
.-.++.+.. .|+..+|+.+++++...|..|.
T Consensus 261 if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 261 IIEFVEYII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 334444443 4788888888888888887654
No 462
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=35.58 E-value=6.7e+02 Score=27.98 Aligned_cols=157 Identities=15% Similarity=0.000 Sum_probs=92.3
Q ss_pred HHhcCCHHHHHH------HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhCCCCCChhhHHHH
Q 011905 281 FCGKGMMKEALG------ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV-------VAGGSVSSGGCYSSL 347 (475)
Q Consensus 281 ~~~~g~~~~a~~------~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l 347 (475)
....|.+.++.+ ++......-.++....|..+...+.+.|+.++|...-... ...+..-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344555665555 5542222112345567788888888999998888764432 222222234456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCchhh
Q 011905 348 VVELVRTKRLKEAEKLFSKMLAS-----G-VKPDGL-ACSVMIRELCLGGQVLEGFCLYEDIEKI-----GFLSSVDSDI 415 (475)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 415 (475)
.......++...|...+.+..+. | ..|... +++.+-..+...++++.|.++++.+... |..+-....+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 65666666777788777766542 2 134443 3333333344458888999888887763 2222235667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 011905 416 HSVLLLGLCRKNHSVEAAKLAR 437 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~ 437 (475)
|..+.+.+...+++..|....+
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh
Confidence 7777777777777777665443
No 463
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=35.26 E-value=2.7e+02 Score=23.36 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC--------------CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSV--------------SSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (475)
+++..|-+.-++.++.++++.|.+..+. +.-..-|.....+.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3445555666666666666666543221 122345555666666677776666665
No 464
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.25 E-value=1.8e+02 Score=21.43 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=7.3
Q ss_pred HHHHhcCChHHHHHHHHH
Q 011905 242 DGICRLGSMERALELLGE 259 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~ 259 (475)
..|...|+.++|...+.+
T Consensus 10 ~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 10 MEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHH
Confidence 334444444444444443
No 465
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=35.11 E-value=3.1e+02 Score=28.40 Aligned_cols=99 Identities=10% Similarity=-0.028 Sum_probs=0.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCC-------------CHhhHHHH
Q 011905 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-------------DTIIYNNV 170 (475)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-------------~~~~~~~l 170 (475)
+..-...+....+-..+.+.|+..+......++... .|+...|+.+++++...|-.. +......|
T Consensus 175 f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~L 252 (709)
T PRK08691 175 LRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYEL 252 (709)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHH
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 205 (475)
+.++.+ ++...++.+++++...|+.+....-..+
T Consensus 253 ldAL~~-~d~~~al~~l~~L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 253 LTGIIN-QDGAALLAKAQEMAACAVGFDNALGELA 286 (709)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 466
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.84 E-value=5.9e+02 Score=28.37 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=12.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 198 DIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 198 ~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
....|..+...+-+.++.++|...
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~ 995 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQ 995 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHh
Confidence 334455555555555555555543
No 467
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.72 E-value=5.8e+02 Score=27.05 Aligned_cols=170 Identities=13% Similarity=0.099 Sum_probs=81.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHH--hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC
Q 011905 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVK--MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 179 (475)
+.+-..|+++.|.++-+. .|+.- ++..-...|.+.+++..|.++|.++.+ .+..+.--+....+
T Consensus 366 k~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~ 431 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQ 431 (911)
T ss_pred HHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCC
Confidence 455566777777665433 23322 222223467778889999999988743 23333333444444
Q ss_pred hhHHHHHHHHhccCCCCCChhhHHH-----HHHHHH-hcCCH----HHHHHHHHH--------HHHCC-CCcCHHHHHHH
Q 011905 180 MIAADELMKGMGLIDLYPDIITYVS-----MIKGFC-NAGRL----EDACGLFKV--------MKRHG-CAANLVAYSAL 240 (475)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~~~~~~~~-----li~~~~-~~~~~----~~a~~~~~~--------m~~~g-~~~~~~~~~~l 240 (475)
.+ +++.|-.=+-..++|...+-.. ++..|. +.+++ +++..-++. +.... ..-+.....+.
T Consensus 432 ~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv 510 (911)
T KOG2034|consen 432 ER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETV 510 (911)
T ss_pred HH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH
Confidence 44 4443322222233443332222 222222 12222 222222211 11100 01112223334
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
...+...|+.+++..+-.-+.. |..++.-+++.+.+++|++++..-
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d-----------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD-----------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566777776665554433 556777777888888888776543
No 468
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.46 E-value=2.8e+02 Score=23.27 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=10.3
Q ss_pred HHHHHhcCChhHHHHHHHHh
Q 011905 171 IRLFCEKGDMIAADELMKGM 190 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m 190 (475)
+-.....|++++|.+-++++
T Consensus 36 aI~~~H~~~~eeA~~~l~~a 55 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKA 55 (204)
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 33344555566555555544
No 469
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.32 E-value=6.3e+02 Score=27.07 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 367788888888888888888887765
No 470
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.36 E-value=5.7e+02 Score=26.22 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCC-------------CCHhhHHHH
Q 011905 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLR-------------PDTIIYNNV 170 (475)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-------------~~~~~~~~l 170 (475)
+......+....+-+.+.+.|+..+......++. ...|+...++.++++....+-. .+......+
T Consensus 180 f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~L 257 (618)
T PRK14951 180 LRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRL 257 (618)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHH
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGF 209 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 209 (475)
+.++.. |+...++++++++...| ..-...+..|+..+
T Consensus 258 ldaL~~-~d~~~al~~l~~l~~~G-~~~~~il~~l~~~~ 294 (618)
T PRK14951 258 IDALAQ-GDGRTVVETADELRLNG-LSAASTLEEMAAVL 294 (618)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
No 471
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.34 E-value=3.3e+02 Score=23.51 Aligned_cols=173 Identities=10% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (475)
..+...+++.+...+.. +..-...+.-.+...+.... ....+.....-..|....--.-.-.+..++++++|.+.+
T Consensus 26 ~~~L~~Ll~~i~~~~~~-~~~K~~l~~YlLlD~~~~~~-~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L-- 101 (226)
T PF13934_consen 26 DNDLRALLDLILSSNVS-LLKKHSLFYYLLLDLDDTRP-SELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL-- 101 (226)
T ss_pred HHHHHHHHHHHhcCCcC-HHHhHHHHHHHHHhcCcccc-ccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh--
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011905 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446 (475)
Q Consensus 367 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 446 (475)
.........-..++.++...|+.+.|.++++...-... +...-..++.. ..++.+.||..+.+...+ ..
T Consensus 102 ---~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~----s~~~~~~~~~~-La~~~v~EAf~~~R~~~~---~~ 170 (226)
T PF13934_consen 102 ---SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLS----SPEALTLYFVA-LANGLVTEAFSFQRSYPD---EL 170 (226)
T ss_pred ---CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC----CHHHHHHHHHH-HHcCCHHHHHHHHHhCch---hh
Q ss_pred ChhhHHHHHHHHHhcC-CHhHHhhccccC
Q 011905 447 QGPYVDKIVEHLKKSG-DEELITNLPKIG 474 (475)
Q Consensus 447 ~~~~~~~l~~~~~~~g-~~~~a~~l~~~~ 474 (475)
....+..++..+.+.. +...+.+++...
T Consensus 171 ~~~l~e~l~~~~~~~~~~~~~~~~Ll~LP 199 (226)
T PF13934_consen 171 RRRLFEQLLEHCLEECARSGRLDELLSLP 199 (226)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhCC
No 472
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.79 E-value=5.3e+02 Score=25.68 Aligned_cols=35 Identities=0% Similarity=-0.096 Sum_probs=23.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 198 (475)
+......++.++.. |+.+.+++++++|...|..|.
T Consensus 245 ~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 245 EPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 44444556665544 778888888888888776654
No 473
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=31.57 E-value=5.6e+02 Score=25.91 Aligned_cols=62 Identities=8% Similarity=-0.085 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
+......++..|.+.|-.+.|..+.+.+-.+-. ...-|..-+.-+.+.|+...+..+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~----~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL----KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555666666666666666666665554322 22334455555556666665555544444
No 474
>PHA02989 ankyrin repeat protein; Provisional
Probab=31.39 E-value=5.2e+02 Score=25.48 Aligned_cols=278 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHhccCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCh--HHHHHHHH
Q 011905 184 DELMKGMGLIDLYPDIITY--VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY-SALLDGICRLGSM--ERALELLG 258 (475)
Q Consensus 184 ~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~--~~a~~~~~ 258 (475)
.++.+.+.+.|..++.. . ...+..++..++... ++.+.+.+.|..++...+ .+-+....+.+.. ....++.+
T Consensus 16 ~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~--~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~ 92 (494)
T PHA02989 16 KNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKI--KIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVK 92 (494)
T ss_pred HHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCCh--HHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHH
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhC
Q 011905 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP-NRVTIS--TLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~ 335 (475)
.+.+.|.++......-..-+..+...+.. .-.++.+.+.+.|..+ +..... +.+..+...+... .++.+.+.+.
T Consensus 93 ~Ll~~Gadin~~d~~g~tpL~~a~~~~~~-~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~--~~iv~~Ll~~ 169 (494)
T PHA02989 93 LLLKFGADINLKTFNGVSPIVCFIYNSNI-NNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVK--KDVIKILLSF 169 (494)
T ss_pred HHHHCCCCCCCCCCCCCcHHHHHHHhccc-CcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCC--HHHHHHHHHc
Q ss_pred CCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 011905 336 GSVSSG---GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA--CSVMIRELCLGGQ--VLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 336 ~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 408 (475)
|..++. ..-..-+..+.+.+--..-.++.+.+.+.|..++... ...++..+...+. ......+++-+...--.
T Consensus 170 Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~adv 249 (494)
T PHA02989 170 GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKI 249 (494)
T ss_pred CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCC
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHhHHhhccc
Q 011905 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD--KIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 409 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~l~~ 472 (475)
...|..-++.|..+..... .++++.+++.|..++...-. ..+....+.|+.+.+..+++
T Consensus 250 n~~d~~G~TpL~~Aa~~~~-----~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~ 310 (494)
T PHA02989 250 NKKDKKGFNPLLISAKVDN-----YEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQ 310 (494)
T ss_pred CCCCCCCCCHHHHHHHhcC-----HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
No 475
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=31.24 E-value=1.3e+02 Score=28.95 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHc
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVM-IRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
..+.++.|..++.+.++. .||-..|-.. -.++.+.+++..|+.=+..+.+.
T Consensus 16 ~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred ccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 344555555555555533 3433222221 13444555555555444444443
No 476
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=31.19 E-value=2.5e+02 Score=21.66 Aligned_cols=114 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH----------HHhc
Q 011905 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL----------FCEK 177 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~----------~~~~ 177 (475)
.++..|.+++......+- +...++.+.+..-.-.+.++..++....-.|......-+-.+ +...
T Consensus 3 nNp~IA~~~l~~l~~s~~------~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~ 76 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSPN------FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQN 76 (126)
T ss_pred CcHHHHHHHHHHHcCCch------HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhccccccc
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 227 (475)
+...-.-.++..+.+.++.-....+..+=..|.+-.+..+|-.+|+.+++
T Consensus 77 R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kllk~ 126 (126)
T PF10155_consen 77 RLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLLKN 126 (126)
T ss_pred chhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHHhC
No 477
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.77 E-value=3.3e+02 Score=22.99 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
..+.++..+...|+++.|.+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3555666666677777777777666654
No 478
>PRK10941 hypothetical protein; Provisional
Probab=30.55 E-value=4e+02 Score=23.84 Aligned_cols=61 Identities=10% Similarity=-0.024 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
.+.+-.+|.+.++++.|++..+.+.... +.++.-+.--.-.|.+.|.+..|..=++...++
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3455566777788888888877777754 224555555556677777777777777776654
No 479
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.41 E-value=3.3e+02 Score=22.87 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=9.8
Q ss_pred hcCCHHHHHHHHHHHH
Q 011905 425 RKNHSVEAAKLARFML 440 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~ 440 (475)
+.|+++.|.+.++-|.
T Consensus 133 ~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 133 RKGSFEEAERFLKFME 148 (204)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4566666666655554
No 480
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=30.35 E-value=4.4e+02 Score=24.26 Aligned_cols=118 Identities=12% Similarity=0.132 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHH
Q 011905 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR---TKRLKEAEKLF 364 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 364 (475)
+.-+.++++..+.+ +-+.......|..+.+..+.+...+.|+++...... +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666655553 244555566666666666777777777777665432 34455555554433 22345555554
Q ss_pred HHHHHC------CC------CCC--HH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 365 SKMLAS------GV------KPD--GL---ACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 365 ~~m~~~------~~------~p~--~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
.+..+. +. .++ .. .+..+..-+.++|-.+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443321 11 011 11 122223334577888888888888888765
No 481
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=30.26 E-value=3.5e+02 Score=23.14 Aligned_cols=55 Identities=9% Similarity=-0.034 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCCCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011905 392 VLEGFCLYEDIEKIGFLSS---VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 446 (475)
...|.+.|.+..+....|. .+..+.-.+.....+.|+.++|.+.|.+++..+-..
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 3456666666665533221 122333445555668999999999999999876333
No 482
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.21 E-value=4.2e+02 Score=23.98 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=30.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhcc
Q 011905 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 192 (475)
++....+.++..+..+.++.+.. ...-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555555555555532 23334556666677777777777776653
No 483
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=30.06 E-value=5.1e+02 Score=24.92 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=59.1
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH--------HHhcCCHHHHHHHHHH
Q 011905 225 MKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI--------FCGKGMMKEALGILDR 296 (475)
Q Consensus 225 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~ 296 (475)
+....+.||..+.|.+...++..-..+-...+|+-..+++ .|=.+-+-++|-. -.+...-++++++++.
T Consensus 174 LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa---DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLen 250 (669)
T KOG3636|consen 174 LDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA---DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLEN 250 (669)
T ss_pred hhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHc
Confidence 3345678999999988888888888888888888888864 2333333332211 1233456788888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHh
Q 011905 297 MEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 297 m~~~~~~p~~~~~~~li~~~~~ 318 (475)
|...=-..|..-+..|...|+.
T Consensus 251 mp~~L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 251 MPAQLSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred CchhcccccchhHHHHHHHHhh
Confidence 8654223355566667766654
No 484
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.03 E-value=54 Score=29.96 Aligned_cols=92 Identities=17% Similarity=0.034 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh-hHHHHHHHHHhcCCHHHHHH
Q 011905 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII-TYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 142 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~ 220 (475)
.|.+++|++.|...++.+ ++....|..-.+++.+.+++..|++=++..... .||.. -|-.=-.+..-.|+|++|..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 577899999998888765 456667777778888888888888877766653 34322 23323334445688888888
Q ss_pred HHHHHHHCCCCcCHHH
Q 011905 221 LFKVMKRHGCAANLVA 236 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~ 236 (475)
.++...+.++.+....
T Consensus 204 dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 204 DLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHhccccHHHHH
Confidence 8888888766554443
No 485
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=29.91 E-value=7.6e+02 Score=26.92 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=13.7
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHhC
Q 011905 310 STLIKGFCVEG--NLDEAYQLIDKVVAG 335 (475)
Q Consensus 310 ~~li~~~~~~~--~~~~a~~~~~~~~~~ 335 (475)
..++.+|.+.+ ++++|+.+..++.+.
T Consensus 816 ~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 816 QPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 44445555555 555555555555543
No 486
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.52 E-value=5.5e+02 Score=25.20 Aligned_cols=109 Identities=9% Similarity=-0.111 Sum_probs=63.3
Q ss_pred HHhcCCHHHHHHHHHHHH---HCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCC----
Q 011905 351 LVRTKRLKEAEKLFSKML---ASGVKPDG-----LACSVMIRELCLGGQVLEGFCLYEDIEK-------IGFLSSV---- 411 (475)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~---~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~---- 411 (475)
+.-.|++.+|.+++...- +.|...+. ..+|.|-....+.|.+..+..+|.+..+ .|+.|.+
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445678888877765432 11211121 1123333334455666666666665553 3544432
Q ss_pred ----c-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011905 412 ----D-SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 412 ----~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
. ..+|| ....|...|++-.|.+.|.+....= ..++..|-.+.++|.-.
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHH
Confidence 1 22344 3445667899999999988887653 67788888888887654
No 487
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.44 E-value=1.5e+02 Score=22.15 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011905 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 320 (475)
+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 344445555555554444444444444444444444
No 488
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.36 E-value=4.7e+02 Score=24.31 Aligned_cols=43 Identities=7% Similarity=-0.159 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
.|-++.......|.+++++.+|++++..|-.|-...-..++..
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3444444444455555555555555555544444433333333
No 489
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.24 E-value=5.8e+02 Score=25.39 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 011905 276 SVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 34556666666666666666654
No 490
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=29.04 E-value=6e+02 Score=26.87 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCC
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDL 195 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 195 (475)
.+..++..+. .|+...++.+++++...|+
T Consensus 248 ~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~ 276 (830)
T PRK07003 248 YMVRLLDALA-AGDGPEILAVADEMALRSL 276 (830)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCC
Confidence 3444444333 2555555555555555543
No 491
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=28.93 E-value=1.7e+02 Score=19.11 Aligned_cols=14 Identities=36% Similarity=0.102 Sum_probs=6.7
Q ss_pred cCCHHHHHHHHHhc
Q 011905 142 ARLANEAMWVLRKM 155 (475)
Q Consensus 142 ~~~~~~A~~~~~~m 155 (475)
.|++=+|-++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 44555555555544
No 492
>PLN03025 replication factor C subunit; Provisional
Probab=28.60 E-value=4.6e+02 Score=24.00 Aligned_cols=32 Identities=13% Similarity=0.010 Sum_probs=19.4
Q ss_pred HHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153 (475)
Q Consensus 120 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 153 (475)
+.+.|+..+......++..+ .|+...++..++
T Consensus 171 ~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq 202 (319)
T PLN03025 171 VEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQ 202 (319)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 34456666666666665543 466666666665
No 493
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.04 E-value=4.4e+02 Score=23.55 Aligned_cols=25 Identities=4% Similarity=-0.203 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 428 HSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
+...|...+......+.+.......
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6777778888777777655555555
No 494
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.82 E-value=4.6e+02 Score=23.69 Aligned_cols=100 Identities=14% Similarity=0.228 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCCcHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---
Q 011905 233 NLVAYSALLDGICRLGSMERALELLGEMEKEG--GDCSPNVVTYTS-VIQIFCGKGMMKEALGILDRMEALGCAPNR--- 306 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--- 306 (475)
....+..+..-|++.++.+.+.+++++..+.. .|.+.|+....+ +.-.|....-+++.++..+.|.+.|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 34556666777777777777777666554421 222333322221 122333334456666667777766654332
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 307 -VTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 307 -~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
.+|..+- +....++.+|-.++-+...
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 2232221 1223456666666655543
No 495
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.67 E-value=2.1e+02 Score=19.85 Aligned_cols=27 Identities=7% Similarity=0.230 Sum_probs=16.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCccCHH
Q 011905 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVK 130 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 130 (475)
.+.++.-.++|+++++-|.++| ..+..
T Consensus 40 ~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 40 FLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred HHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 4455566666777777666666 44443
No 496
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=27.38 E-value=84 Score=21.42 Aligned_cols=31 Identities=13% Similarity=0.004 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 426 KNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
.|+.+.+.+++++..+.|+++.....+.+..
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p 44 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMP 44 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3444455555555554444444333333333
No 497
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=27.10 E-value=5e+02 Score=23.90 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSS-GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
.|.-+..+.|+..+|.+.|+++.+.-...+ ......|+.++....-+.++..++.+..+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444567888888888877766432111 12344566777766666666666655543
No 498
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.02 E-value=5.2e+02 Score=25.72 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 233 (475)
.....+++++ ..++.++|+.+++++...|..|.
T Consensus 243 ~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 243 ERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 3344455555 45778888888888888775543
No 499
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.76 E-value=5.2e+02 Score=24.01 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 378 (475)
|-+++......|.++.++.+|++++..|-.|-...
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieEl 177 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEEL 177 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHH
Confidence 44444444444555555555555555554444333
No 500
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=26.23 E-value=1.2e+02 Score=20.89 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhh
Q 011905 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
+...+.++|..+.+.| ..++.-...+...+...|+.+.+..
T Consensus 35 ~~~s~l~lf~~Le~~~-~l~~~nl~~L~~lL~~i~R~DL~~~ 75 (77)
T cd00045 35 KIKTPFDLFLVLERQG-KLGEDNLSYLEELLRSIGRNDLLKK 75 (77)
T ss_pred ccCCHHHHHHHHHHcC-CCCCchHHHHHHHHHHcCHHHHHHH
Confidence 3445666677766666 4444555555666666666655543
Done!