Query 011905
Match_columns 475
No_of_seqs 627 out of 3060
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 17:42:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.8E-33 9.5E-38 280.2 44.5 402 58-472 83-574 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.6E-32 8.8E-37 273.2 41.9 368 92-472 82-540 (597)
3 4g26_A Pentatricopeptide repea 100.0 9.9E-32 3.4E-36 258.8 30.1 206 146-353 7-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 4.6E-32 1.6E-36 261.1 23.6 205 217-425 8-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-26 6.7E-31 217.8 46.6 377 71-463 12-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-26 4.1E-31 219.3 41.7 358 101-472 6-363 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.4E-22 4.8E-27 195.2 39.5 366 92-469 24-446 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 8.8E-23 3E-27 196.6 37.1 320 126-459 23-374 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.4E-22 4.9E-27 198.5 35.7 359 70-443 18-479 (514)
10 2gw1_A Mitochondrial precursor 99.9 1.2E-21 4.1E-26 192.0 35.6 366 95-472 7-473 (514)
11 3fp2_A TPR repeat-containing p 99.9 2.4E-20 8.1E-25 183.8 38.1 385 70-471 37-485 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 8.4E-20 2.9E-24 169.9 37.4 319 131-462 5-354 (359)
13 3fp2_A TPR repeat-containing p 99.9 1.4E-18 4.8E-23 171.1 40.5 356 70-443 71-492 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 1.6E-18 5.6E-23 161.1 38.4 318 94-424 3-351 (359)
15 3hym_B Cell division cycle pro 99.9 2.8E-19 9.7E-24 164.4 32.5 295 161-466 19-323 (330)
16 1fch_A Peroxisomal targeting s 99.9 4.4E-19 1.5E-23 165.9 29.0 286 178-473 39-355 (368)
17 3hym_B Cell division cycle pro 99.9 1.4E-18 4.9E-23 159.6 30.3 294 126-430 19-322 (330)
18 2xm6_A Protein corresponding t 99.8 8.2E-16 2.8E-20 149.5 48.0 338 71-443 56-433 (490)
19 1fch_A Peroxisomal targeting s 99.8 2.1E-18 7.3E-23 161.2 27.5 293 141-440 37-357 (368)
20 4eqf_A PEX5-related protein; a 99.8 1.7E-18 5.8E-23 161.8 24.3 265 198-472 64-351 (365)
21 4eqf_A PEX5-related protein; a 99.8 3.6E-18 1.2E-22 159.6 23.9 269 162-438 63-352 (365)
22 2xm6_A Protein corresponding t 99.8 4.6E-15 1.6E-19 144.2 45.7 346 93-472 38-427 (490)
23 2ooe_A Cleavage stimulation fa 99.8 2.5E-15 8.4E-20 147.6 43.5 401 58-472 12-487 (530)
24 3cv0_A Peroxisome targeting si 99.8 7.6E-17 2.6E-21 147.8 27.8 276 166-473 23-311 (327)
25 3cv0_A Peroxisome targeting si 99.8 5.1E-17 1.8E-21 149.0 24.9 283 128-440 20-313 (327)
26 3mkr_A Coatomer subunit epsilo 99.8 2.3E-16 7.8E-21 141.9 28.3 252 138-405 8-264 (291)
27 3mkr_A Coatomer subunit epsilo 99.8 7.4E-16 2.5E-20 138.5 29.0 252 173-443 8-265 (291)
28 1b89_A Protein (clathrin heavy 99.8 2.8E-17 9.6E-22 151.3 19.7 286 105-435 14-304 (449)
29 3spa_A Mtrpol, DNA-directed RN 99.8 9.4E-19 3.2E-23 173.6 10.3 154 232-390 125-286 (1134)
30 3spa_A Mtrpol, DNA-directed RN 99.8 1.5E-18 5E-23 172.3 10.7 119 163-283 126-248 (1134)
31 2ooe_A Cleavage stimulation fa 99.7 2.4E-14 8.2E-19 140.6 38.9 370 92-472 11-449 (530)
32 1b89_A Protein (clathrin heavy 99.7 2.6E-17 8.9E-22 151.5 15.6 282 141-470 15-304 (449)
33 1xi4_A Clathrin heavy chain; a 99.7 9.5E-14 3.2E-18 142.5 40.5 344 57-462 983-1328(1630)
34 4g1t_A Interferon-induced prot 99.7 6.1E-14 2.1E-18 135.6 36.7 361 91-472 48-454 (472)
35 1xi4_A Clathrin heavy chain; a 99.7 1.6E-12 5.5E-17 133.6 44.1 310 106-462 1088-1415(1630)
36 3uq3_A Heat shock protein STI1 99.7 1.1E-14 3.7E-19 128.5 24.6 228 200-443 6-237 (258)
37 3uq3_A Heat shock protein STI1 99.7 3.7E-14 1.3E-18 125.1 24.8 118 284-404 118-235 (258)
38 2pl2_A Hypothetical conserved 99.7 2.6E-14 8.9E-19 122.7 22.3 197 233-439 4-211 (217)
39 2pl2_A Hypothetical conserved 99.7 2.4E-14 8E-19 123.0 21.6 196 163-366 4-210 (217)
40 4g1t_A Interferon-induced prot 99.6 4.2E-13 1.5E-17 129.7 32.8 353 70-443 63-460 (472)
41 3u4t_A TPR repeat-containing p 99.6 1.5E-13 5.1E-18 122.3 26.6 254 201-459 5-266 (272)
42 1ouv_A Conserved hypothetical 99.6 1.1E-12 3.9E-17 116.8 32.0 222 200-443 7-252 (273)
43 2ho1_A Type 4 fimbrial biogene 99.6 4.9E-13 1.7E-17 117.5 27.4 202 234-443 37-239 (252)
44 2vq2_A PILW, putative fimbrial 99.6 4.6E-13 1.6E-17 115.3 25.4 200 165-368 9-209 (225)
45 2ho1_A Type 4 fimbrial biogene 99.6 7.7E-13 2.6E-17 116.3 27.2 202 164-370 37-238 (252)
46 2q7f_A YRRB protein; TPR, prot 99.6 1.1E-13 3.7E-18 120.9 21.5 211 234-454 23-233 (243)
47 1ouv_A Conserved hypothetical 99.6 2.3E-12 7.9E-17 114.8 30.5 219 233-473 5-247 (273)
48 3u4t_A TPR repeat-containing p 99.6 3E-13 1E-17 120.4 24.6 193 132-332 6-205 (272)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.2E-14 2.8E-18 124.2 20.7 218 177-404 18-243 (275)
50 2vq2_A PILW, putative fimbrial 99.6 1.4E-12 4.9E-17 112.1 27.8 203 234-443 8-212 (225)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.3E-14 1.8E-18 125.4 18.5 223 165-399 44-269 (275)
52 2h6f_A Protein farnesyltransfe 99.6 4.2E-13 1.4E-17 124.7 24.5 197 164-367 97-302 (382)
53 2h6f_A Protein farnesyltransfe 99.6 6.4E-13 2.2E-17 123.5 25.1 233 128-369 96-347 (382)
54 2q7f_A YRRB protein; TPR, prot 99.6 2.7E-13 9.2E-18 118.4 19.8 197 131-334 25-221 (243)
55 4a1s_A PINS, partner of inscut 99.5 6.2E-13 2.1E-17 126.0 21.9 209 235-443 127-373 (411)
56 3sf4_A G-protein-signaling mod 99.5 3.2E-13 1.1E-17 127.6 19.7 299 165-464 10-363 (406)
57 3e4b_A ALGK; tetratricopeptide 99.5 1.2E-12 4E-17 125.5 23.3 335 71-443 16-388 (452)
58 3e4b_A ALGK; tetratricopeptide 99.5 6.7E-13 2.3E-17 127.1 21.4 188 201-406 178-388 (452)
59 3ro2_A PINS homolog, G-protein 99.5 8.6E-13 2.9E-17 121.0 19.1 272 171-443 12-333 (338)
60 4a1s_A PINS, partner of inscut 99.5 6.8E-13 2.3E-17 125.7 18.7 271 201-472 50-367 (411)
61 3sf4_A G-protein-signaling mod 99.5 7.9E-13 2.7E-17 124.9 18.7 301 128-430 8-364 (406)
62 3ulq_A Response regulator aspa 99.5 1.7E-11 5.9E-16 114.9 25.2 299 138-442 21-368 (383)
63 3nf1_A KLC 1, kinesin light ch 99.5 7.3E-13 2.5E-17 120.2 14.9 205 235-442 70-307 (311)
64 2ond_A Cleavage stimulation fa 99.5 1.1E-10 3.7E-15 105.9 29.2 220 216-443 33-271 (308)
65 2ond_A Cleavage stimulation fa 99.5 7.1E-11 2.4E-15 107.1 27.8 217 146-369 33-269 (308)
66 3ro2_A PINS homolog, G-protein 99.5 3.6E-12 1.2E-16 116.7 18.9 134 272-405 184-332 (338)
67 4abn_A Tetratricopeptide repea 99.4 8.9E-12 3.1E-16 120.1 20.5 195 233-436 101-315 (474)
68 4abn_A Tetratricopeptide repea 99.4 1.8E-11 6.2E-16 117.9 22.3 215 249-471 83-315 (474)
69 3vtx_A MAMA; tetratricopeptide 99.4 7.3E-11 2.5E-15 98.1 22.8 162 201-368 7-168 (184)
70 3vtx_A MAMA; tetratricopeptide 99.4 6.9E-11 2.4E-15 98.3 22.5 166 163-334 4-169 (184)
71 3ulq_A Response regulator aspa 99.4 2.9E-11 1E-15 113.4 22.5 297 174-472 22-363 (383)
72 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-11 4.8E-16 111.7 18.6 240 165-405 28-307 (311)
73 3q15_A PSP28, response regulat 99.4 1.8E-10 6.1E-15 107.8 25.4 233 205-442 107-365 (378)
74 4e6h_A MRNA 3'-END-processing 99.4 6.2E-09 2.1E-13 103.3 37.0 406 57-472 64-565 (679)
75 1hz4_A MALT regulatory protein 99.4 7E-10 2.4E-14 103.5 28.4 298 136-443 21-350 (373)
76 1hz4_A MALT regulatory protein 99.4 5.8E-10 2E-14 104.0 26.9 298 167-464 17-352 (373)
77 3as5_A MAMA; tetratricopeptide 99.3 2.6E-10 9.1E-15 94.4 21.4 162 131-298 10-171 (186)
78 3q15_A PSP28, response regulat 99.3 4E-10 1.4E-14 105.4 24.9 231 238-472 105-360 (378)
79 4e6h_A MRNA 3'-END-processing 99.3 2.9E-08 9.9E-13 98.6 38.7 377 74-457 119-583 (679)
80 3as5_A MAMA; tetratricopeptide 99.3 4.3E-10 1.5E-14 93.1 21.7 164 165-334 9-172 (186)
81 4i17_A Hypothetical protein; T 99.3 9.7E-10 3.3E-14 94.8 21.9 208 232-456 5-222 (228)
82 3edt_B KLC 2, kinesin light ch 99.3 1E-10 3.6E-15 104.1 16.3 208 234-442 43-281 (283)
83 4gyw_A UDP-N-acetylglucosamine 99.3 5.3E-10 1.8E-14 112.2 21.4 164 271-440 9-172 (723)
84 4gyw_A UDP-N-acetylglucosamine 99.2 2.9E-10 1E-14 114.1 19.0 166 128-299 8-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.2 1.1E-10 3.8E-15 104.0 14.5 137 163-299 42-197 (283)
86 4i17_A Hypothetical protein; T 99.2 2.7E-09 9.1E-14 92.0 20.6 197 127-336 5-210 (228)
87 3qky_A Outer membrane assembly 99.2 8.5E-09 2.9E-13 90.8 22.0 91 380-471 152-255 (261)
88 3mv2_B Coatomer subunit epsilo 99.1 6.2E-08 2.1E-12 85.6 25.1 179 183-370 85-282 (310)
89 3mv2_B Coatomer subunit epsilo 99.1 2.9E-08 1E-12 87.6 22.6 245 137-406 21-283 (310)
90 2fo7_A Synthetic consensus TPR 99.1 1.2E-08 4.2E-13 79.2 17.2 126 168-298 5-130 (136)
91 3qky_A Outer membrane assembly 99.1 1.1E-08 3.6E-13 90.2 18.6 100 163-263 14-126 (261)
92 1qqe_A Vesicular transport pro 99.1 1.4E-08 4.9E-13 91.0 19.2 90 173-262 46-146 (292)
93 1qqe_A Vesicular transport pro 99.0 1.6E-08 5.5E-13 90.7 19.2 175 179-368 32-226 (292)
94 2fo7_A Synthetic consensus TPR 99.0 2.6E-08 9E-13 77.2 17.7 128 202-334 4-131 (136)
95 2uy1_A Cleavage stimulation fa 99.0 9.6E-07 3.3E-11 85.0 29.6 354 94-472 15-408 (493)
96 3urz_A Uncharacterized protein 98.9 7.1E-08 2.4E-12 81.6 18.3 131 240-378 60-192 (208)
97 3rjv_A Putative SEL1 repeat pr 98.9 1.7E-07 5.9E-12 79.5 20.1 160 273-443 20-198 (212)
98 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.4E-07 4.8E-12 80.9 19.7 192 233-443 3-214 (225)
99 3urz_A Uncharacterized protein 98.9 7.1E-08 2.4E-12 81.6 17.5 126 205-336 60-187 (208)
100 4ga2_A E3 SUMO-protein ligase 98.9 7.9E-09 2.7E-13 82.5 10.8 143 315-463 6-149 (150)
101 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.4E-07 8.4E-12 79.4 20.9 202 164-406 4-214 (225)
102 3rjv_A Putative SEL1 repeat pr 98.9 2.2E-07 7.6E-12 78.8 20.2 176 217-406 4-198 (212)
103 2pzi_A Probable serine/threoni 98.9 5E-08 1.7E-12 98.3 18.8 174 175-356 402-583 (681)
104 3dra_A Protein farnesyltransfe 98.9 1.7E-06 5.9E-11 77.1 26.6 232 216-454 50-299 (306)
105 3dra_A Protein farnesyltransfe 98.9 1.6E-06 5.5E-11 77.2 25.6 220 108-334 47-286 (306)
106 3qou_A Protein YBBN; thioredox 98.9 6.5E-08 2.2E-12 86.4 16.6 167 127-298 115-282 (287)
107 2r5s_A Uncharacterized protein 98.9 4.1E-08 1.4E-12 80.7 14.1 161 132-297 9-170 (176)
108 2pzi_A Probable serine/threoni 98.9 1.9E-07 6.6E-12 94.0 21.6 173 210-391 402-583 (681)
109 3qou_A Protein YBBN; thioredox 98.9 6.5E-08 2.2E-12 86.4 16.1 155 307-468 118-275 (287)
110 2vsy_A XCC0866; transferase, g 98.9 1.1E-07 3.9E-12 93.8 18.9 154 247-406 2-158 (568)
111 4ga2_A E3 SUMO-protein ligase 98.9 1.5E-08 5.2E-13 80.8 10.3 109 142-253 10-118 (150)
112 2ifu_A Gamma-SNAP; membrane fu 98.8 6.2E-08 2.1E-12 87.5 15.2 162 241-403 43-222 (307)
113 2vsy_A XCC0866; transferase, g 98.8 1E-07 3.5E-12 94.2 18.0 152 108-263 3-157 (568)
114 2r5s_A Uncharacterized protein 98.8 1.1E-07 3.8E-12 78.0 14.9 161 98-262 10-172 (176)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 8.7E-08 3E-12 86.6 15.2 186 207-397 44-253 (307)
116 3u3w_A Transcriptional activat 98.7 3.3E-06 1.1E-10 75.5 23.1 62 378-440 198-264 (293)
117 3u3w_A Transcriptional activat 98.7 5.7E-06 2E-10 74.0 23.8 162 241-403 82-264 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.4E-06 4.6E-11 73.8 18.8 130 272-406 7-151 (213)
119 2qfc_A PLCR protein; TPR, HTH, 98.7 6.8E-06 2.3E-10 73.5 24.2 169 273-441 77-265 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.5E-06 5.2E-11 73.5 18.8 129 167-300 9-150 (213)
121 4gco_A Protein STI-1; structur 98.7 7.4E-07 2.5E-11 68.4 14.9 110 342-456 14-123 (126)
122 1na0_A Designed protein CTPR3; 98.7 1.2E-06 4E-11 66.6 15.9 116 341-461 9-124 (125)
123 3q7a_A Farnesyltransferase alp 98.7 2.2E-05 7.5E-10 70.8 26.0 178 103-287 63-258 (349)
124 2vyi_A SGTA protein; chaperone 98.7 1.1E-06 3.8E-11 67.4 15.0 119 341-464 12-130 (131)
125 2lni_A Stress-induced-phosphop 98.6 1.1E-06 3.7E-11 67.9 14.5 118 340-462 15-132 (133)
126 2uy1_A Cleavage stimulation fa 98.6 6.8E-05 2.3E-09 72.1 29.9 344 72-441 28-412 (493)
127 2qfc_A PLCR protein; TPR, HTH, 98.6 3.6E-06 1.2E-10 75.3 19.7 169 130-298 76-264 (293)
128 3q7a_A Farnesyltransferase alp 98.6 3.2E-05 1.1E-09 69.8 24.8 244 179-456 69-345 (349)
129 1a17_A Serine/threonine protei 98.6 1.9E-06 6.5E-11 69.4 15.7 94 167-262 16-109 (166)
130 1na0_A Designed protein CTPR3; 98.6 2.2E-06 7.6E-11 65.1 14.4 95 166-262 11-105 (125)
131 1a17_A Serine/threonine protei 98.6 3.5E-06 1.2E-10 67.8 16.3 127 309-440 16-144 (166)
132 4gco_A Protein STI-1; structur 98.6 2.1E-06 7.2E-11 65.8 14.1 95 166-262 15-109 (126)
133 3gyz_A Chaperone protein IPGC; 98.6 6.4E-06 2.2E-10 65.2 17.0 103 341-449 36-138 (151)
134 3gw4_A Uncharacterized protein 98.6 1.5E-06 5.1E-11 72.8 14.2 100 343-442 68-176 (203)
135 2lni_A Stress-induced-phosphop 98.6 2.4E-06 8.3E-11 65.8 14.4 98 163-262 15-112 (133)
136 3gw4_A Uncharacterized protein 98.6 1.5E-06 5E-11 72.9 14.1 156 212-368 5-174 (203)
137 4f3v_A ESX-1 secretion system 98.6 1.9E-06 6.6E-11 75.0 14.9 190 246-443 18-238 (282)
138 2vgx_A Chaperone SYCD; alterna 98.5 1.3E-06 4.4E-11 69.2 12.0 99 341-443 21-119 (148)
139 2c2l_A CHIP, carboxy terminus 98.5 5.6E-07 1.9E-11 80.0 10.9 97 164-262 4-100 (281)
140 2vyi_A SGTA protein; chaperone 98.5 3E-06 1E-10 64.9 13.9 94 167-262 15-108 (131)
141 2e2e_A Formate-dependent nitri 98.5 1.5E-06 5.3E-11 71.1 12.8 121 318-443 22-145 (177)
142 4f3v_A ESX-1 secretion system 98.5 2.4E-06 8E-11 74.5 14.1 127 239-370 107-237 (282)
143 3gyz_A Chaperone protein IPGC; 98.5 1.3E-06 4.3E-11 69.3 11.1 97 200-300 37-133 (151)
144 2c2l_A CHIP, carboxy terminus 98.5 7.9E-07 2.7E-11 79.0 11.0 96 199-298 4-99 (281)
145 2e2e_A Formate-dependent nitri 98.5 1.4E-06 4.8E-11 71.4 11.5 120 176-300 22-144 (177)
146 1p5q_A FKBP52, FK506-binding p 98.5 4.4E-06 1.5E-10 76.3 15.6 146 270-440 146-292 (336)
147 1elw_A TPR1-domain of HOP; HOP 98.4 1E-05 3.4E-10 60.6 15.0 110 342-456 5-114 (118)
148 1p5q_A FKBP52, FK506-binding p 98.4 4.2E-06 1.4E-10 76.4 14.7 124 342-469 148-285 (336)
149 3dss_A Geranylgeranyl transfer 98.4 0.00037 1.3E-08 62.5 26.2 95 215-314 90-187 (331)
150 2vgx_A Chaperone SYCD; alterna 98.4 2.1E-06 7.3E-11 67.9 10.6 92 203-298 25-116 (148)
151 2xcb_A PCRH, regulatory protei 98.4 6.7E-06 2.3E-10 64.5 13.3 98 342-443 19-116 (142)
152 3dss_A Geranylgeranyl transfer 98.4 0.00033 1.1E-08 62.8 25.5 197 250-458 90-319 (331)
153 2dba_A Smooth muscle cell asso 98.4 1.5E-05 5.1E-10 62.6 15.3 112 340-457 27-142 (148)
154 3q49_B STIP1 homology and U bo 98.4 7.5E-06 2.6E-10 63.5 13.2 99 340-442 8-106 (137)
155 3sz7_A HSC70 cochaperone (SGT) 98.3 7.4E-06 2.5E-10 66.0 12.9 98 306-405 11-108 (164)
156 3upv_A Heat shock protein STI1 98.3 1.2E-05 4.1E-10 61.4 13.4 98 342-443 5-102 (126)
157 1elw_A TPR1-domain of HOP; HOP 98.3 2.2E-05 7.4E-10 58.7 14.7 95 166-262 6-100 (118)
158 4gcn_A Protein STI-1; structur 98.3 1.7E-05 5.9E-10 60.7 13.6 109 343-454 10-122 (127)
159 2fbn_A 70 kDa peptidylprolyl i 98.3 2.1E-05 7E-10 65.6 15.0 124 306-433 38-176 (198)
160 2xcb_A PCRH, regulatory protei 98.3 9.5E-06 3.2E-10 63.6 11.9 87 207-297 26-112 (142)
161 3upv_A Heat shock protein STI1 98.3 3.3E-05 1.1E-09 58.9 14.7 92 275-368 8-99 (126)
162 1elr_A TPR2A-domain of HOP; HO 98.3 1.2E-05 4.1E-10 61.5 12.2 115 342-459 5-123 (131)
163 2kck_A TPR repeat; tetratricop 98.3 1.4E-05 4.7E-10 59.2 11.9 94 202-299 9-105 (112)
164 2kck_A TPR repeat; tetratricop 98.3 1.7E-05 5.8E-10 58.7 12.3 99 163-263 5-106 (112)
165 4b4t_Q 26S proteasome regulato 98.3 3.8E-05 1.3E-09 72.7 17.7 199 206-405 11-245 (434)
166 4gcn_A Protein STI-1; structur 98.2 3.6E-05 1.2E-09 58.9 13.8 97 202-299 11-111 (127)
167 2fbn_A 70 kDa peptidylprolyl i 98.2 2.9E-05 1E-09 64.7 14.3 156 243-403 13-184 (198)
168 4b4t_Q 26S proteasome regulato 98.2 0.00011 3.9E-09 69.4 19.9 199 171-369 11-244 (434)
169 3sz7_A HSC70 cochaperone (SGT) 98.2 2.3E-05 8E-10 63.0 12.8 99 163-263 10-108 (164)
170 3q49_B STIP1 homology and U bo 98.2 3.2E-05 1.1E-09 59.9 13.2 95 200-298 10-104 (137)
171 2xev_A YBGF; tetratricopeptide 98.2 5.6E-05 1.9E-09 57.7 14.3 97 345-443 6-106 (129)
172 1elr_A TPR2A-domain of HOP; HO 98.2 1.8E-05 6.1E-10 60.5 11.3 95 167-262 7-107 (131)
173 2dba_A Smooth muscle cell asso 98.2 6.7E-05 2.3E-09 58.7 14.6 97 163-262 27-127 (148)
174 3ro3_A PINS homolog, G-protein 98.1 2.2E-05 7.4E-10 62.6 11.4 100 343-442 51-158 (164)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.1E-05 1E-09 73.9 13.9 134 305-442 267-415 (457)
176 3rkv_A Putative peptidylprolyl 98.1 2.5E-05 8.4E-10 62.8 11.1 101 344-448 14-131 (162)
177 3k9i_A BH0479 protein; putativ 98.1 6.3E-06 2.1E-10 62.2 6.9 87 354-443 3-91 (117)
178 1hxi_A PEX5, peroxisome target 98.1 3.4E-05 1.2E-09 58.5 11.0 96 344-443 20-115 (121)
179 1ihg_A Cyclophilin 40; ppiase 98.1 3.5E-05 1.2E-09 71.2 13.0 91 376-470 273-363 (370)
180 1wao_1 Serine/threonine protei 98.1 1.9E-05 6.4E-10 75.8 11.0 88 316-405 16-103 (477)
181 1hxi_A PEX5, peroxisome target 98.1 3.8E-05 1.3E-09 58.2 10.4 89 171-261 24-112 (121)
182 3ro3_A PINS homolog, G-protein 98.0 4.3E-05 1.5E-09 60.8 11.1 96 166-261 11-116 (164)
183 2xev_A YBGF; tetratricopeptide 98.0 0.00024 8.3E-09 54.0 14.3 91 170-262 8-104 (129)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 8.4E-05 2.9E-09 70.9 13.8 151 248-404 248-414 (457)
185 3k9i_A BH0479 protein; putativ 98.0 2.4E-05 8.2E-10 58.9 7.6 85 177-262 3-89 (117)
186 1wao_1 Serine/threonine protei 97.9 3.9E-05 1.3E-09 73.5 10.1 124 275-402 10-136 (477)
187 1dce_A Protein (RAB geranylger 97.9 0.00077 2.6E-08 65.9 18.8 172 288-466 46-244 (567)
188 1ihg_A Cyclophilin 40; ppiase 97.9 0.00014 4.8E-09 67.1 12.7 89 234-326 273-361 (370)
189 2hr2_A Hypothetical protein; a 97.9 0.00026 8.9E-09 55.6 12.2 96 344-442 14-131 (159)
190 3n71_A Histone lysine methyltr 97.9 0.00011 3.8E-09 70.1 11.9 128 315-442 318-464 (490)
191 2l6j_A TPR repeat-containing p 97.9 9.5E-05 3.2E-09 54.6 9.3 93 375-471 3-101 (111)
192 3n71_A Histone lysine methyltr 97.8 0.00016 5.4E-09 69.1 12.5 89 244-332 319-419 (490)
193 3rkv_A Putative peptidylprolyl 97.8 0.00033 1.1E-08 56.0 12.5 96 166-262 13-125 (162)
194 1klx_A Cysteine rich protein B 97.7 0.0012 4.2E-08 51.0 14.2 110 321-443 10-127 (138)
195 2if4_A ATFKBP42; FKBP-like, al 97.7 8.4E-05 2.9E-09 67.8 8.4 131 306-442 179-328 (338)
196 1klx_A Cysteine rich protein B 97.7 0.0011 3.7E-08 51.4 13.6 15 248-262 75-89 (138)
197 1na3_A Designed protein CTPR2; 97.7 0.00056 1.9E-08 48.1 10.8 81 377-461 10-90 (91)
198 2hr2_A Hypothetical protein; a 97.7 0.0009 3.1E-08 52.5 12.6 61 236-299 59-130 (159)
199 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00022 7.4E-09 65.0 10.6 95 308-405 232-328 (338)
200 1dce_A Protein (RAB geranylger 97.7 0.0026 8.9E-08 62.2 18.4 174 107-287 42-242 (567)
201 2kat_A Uncharacterized protein 97.5 0.0012 4.2E-08 49.0 10.9 79 360-442 4-82 (115)
202 1zu2_A Mitochondrial import re 97.4 0.00062 2.1E-08 53.4 8.0 102 353-460 14-136 (158)
203 2l6j_A TPR repeat-containing p 97.4 0.00058 2E-08 50.2 7.7 59 167-226 7-65 (111)
204 2kat_A Uncharacterized protein 97.4 0.0014 4.9E-08 48.6 9.9 62 199-261 19-80 (115)
205 3mkq_A Coatomer beta'-subunit; 97.4 0.023 7.7E-07 58.4 22.0 194 208-471 608-806 (814)
206 3mkq_A Coatomer beta'-subunit; 97.3 0.0057 2E-07 62.9 17.2 124 138-296 608-732 (814)
207 1na3_A Designed protein CTPR2; 97.3 0.0018 6.2E-08 45.4 9.6 60 202-262 12-71 (91)
208 3ma5_A Tetratricopeptide repea 97.3 0.0015 5.2E-08 47.2 8.7 85 375-462 6-91 (100)
209 1zu2_A Mitochondrial import re 97.1 0.00089 3E-08 52.5 6.2 85 142-228 15-120 (158)
210 3ma5_A Tetratricopeptide repea 97.1 0.0022 7.4E-08 46.3 7.8 63 163-226 6-68 (100)
211 3qww_A SET and MYND domain-con 96.9 0.003 1E-07 59.2 8.8 88 354-441 311-410 (433)
212 3qwp_A SET and MYND domain-con 96.9 0.0049 1.7E-07 57.8 10.0 94 348-441 294-399 (429)
213 3qww_A SET and MYND domain-con 96.7 0.0076 2.6E-07 56.5 9.8 61 272-332 341-408 (433)
214 2kc7_A BFR218_protein; tetratr 96.7 0.019 6.5E-07 40.8 10.0 56 349-405 8-64 (99)
215 3ly7_A Transcriptional activat 96.6 0.058 2E-06 48.6 14.7 74 373-452 274-347 (372)
216 1wy6_A Hypothetical protein ST 96.6 0.13 4.5E-06 38.4 14.9 63 344-407 94-156 (172)
217 3ly7_A Transcriptional activat 96.6 0.053 1.8E-06 48.9 14.2 70 305-378 276-345 (372)
218 3qwp_A SET and MYND domain-con 96.5 0.013 4.6E-07 54.8 10.5 61 272-332 330-397 (429)
219 3bee_A Putative YFRE protein; 96.5 0.045 1.5E-06 38.6 10.6 67 374-443 4-73 (93)
220 3mkq_B Coatomer subunit alpha; 96.4 0.25 8.6E-06 39.2 16.4 104 136-260 12-115 (177)
221 1wy6_A Hypothetical protein ST 96.2 0.26 8.9E-06 36.8 13.6 139 211-373 19-157 (172)
222 3mkq_B Coatomer subunit alpha; 96.2 0.36 1.2E-05 38.3 17.0 27 234-260 34-60 (177)
223 1pc2_A Mitochondria fission pr 96.1 0.055 1.9E-06 41.8 10.1 85 357-443 14-101 (152)
224 2kc7_A BFR218_protein; tetratr 96.1 0.021 7.1E-07 40.6 7.6 53 209-262 10-63 (99)
225 3bee_A Putative YFRE protein; 95.9 0.16 5.5E-06 35.7 11.1 46 216-262 26-71 (93)
226 2v5f_A Prolyl 4-hydroxylase su 95.5 0.2 6.8E-06 36.0 10.6 31 413-443 46-76 (104)
227 1pc2_A Mitochondria fission pr 95.5 0.11 3.9E-06 40.1 9.5 83 289-375 16-103 (152)
228 2v5f_A Prolyl 4-hydroxylase su 95.0 0.3 1E-05 35.0 10.2 29 234-262 46-74 (104)
229 3lvg_A Clathrin heavy chain 1; 94.9 5.2E-05 1.8E-09 69.7 -12.5 117 129-260 54-170 (624)
230 3u64_A Protein TP_0956; tetrat 94.8 0.39 1.3E-05 41.6 11.5 85 357-445 179-272 (301)
231 4h7y_A Dual specificity protei 94.5 0.74 2.5E-05 35.2 11.1 115 340-459 12-139 (161)
232 1nzn_A CGI-135 protein, fissio 94.3 0.48 1.6E-05 35.2 9.6 89 353-443 13-104 (126)
233 4b4t_P 26S proteasome regulato 94.1 3.9 0.00013 38.3 18.9 190 178-369 30-246 (445)
234 4h7y_A Dual specificity protei 94.0 1.1 3.6E-05 34.4 11.0 98 163-262 12-122 (161)
235 2ff4_A Probable regulatory pro 93.9 2.1 7.2E-05 39.3 15.6 69 382-453 177-250 (388)
236 4b4t_P 26S proteasome regulato 93.8 4.2 0.00014 38.0 17.7 246 212-461 29-306 (445)
237 3u64_A Protein TP_0956; tetrat 93.4 1 3.6E-05 38.9 11.4 80 216-301 180-270 (301)
238 3lvg_A Clathrin heavy chain 1; 93.2 0.00046 1.6E-08 63.6 -9.9 186 93-296 82-287 (624)
239 1nzn_A CGI-135 protein, fissio 93.2 0.65 2.2E-05 34.5 8.6 80 290-370 20-103 (126)
240 4gns_B Protein CSD3, chitin bi 93.1 0.85 2.9E-05 45.6 12.0 125 169-298 253-398 (754)
241 4fhn_B Nucleoporin NUP120; pro 92.7 3.4 0.00012 44.0 16.9 149 168-324 816-989 (1139)
242 1v54_E Cytochrome C oxidase po 92.5 0.99 3.4E-05 31.7 8.0 72 101-173 16-88 (109)
243 4fhn_B Nucleoporin NUP120; pro 92.2 2.3 7.9E-05 45.4 14.8 185 277-470 818-1042(1139)
244 2ff4_A Probable regulatory pro 91.2 1.2 4.2E-05 40.9 10.1 70 236-308 173-247 (388)
245 4gns_B Protein CSD3, chitin bi 90.9 3.2 0.00011 41.5 13.2 51 386-439 347-397 (754)
246 1qsa_A Protein (soluble lytic 90.6 14 0.00047 36.2 25.5 252 133-404 76-347 (618)
247 2y69_E Cytochrome C oxidase su 90.4 1.8 6.1E-05 32.2 8.0 72 101-173 59-131 (152)
248 1v54_E Cytochrome C oxidase po 90.0 3.2 0.00011 29.2 8.6 50 356-405 25-74 (109)
249 4ady_A RPN2, 26S proteasome re 89.9 19 0.00066 36.9 27.7 258 173-441 383-657 (963)
250 4ady_A RPN2, 26S proteasome re 89.4 21 0.00071 36.7 25.5 313 139-465 384-723 (963)
251 3o48_A Mitochondria fission 1 88.2 6.6 0.00022 29.3 10.6 71 371-443 35-108 (134)
252 3txn_A 26S proteasome regulato 87.3 14 0.00047 33.8 13.7 168 234-403 19-208 (394)
253 3lpz_A GET4 (YOR164C homolog); 85.8 18 0.00063 32.0 18.7 168 131-334 37-215 (336)
254 2y69_E Cytochrome C oxidase su 85.4 9.7 0.00033 28.4 9.6 63 356-421 68-130 (152)
255 4b4t_R RPN7, 26S proteasome re 83.6 9.4 0.00032 35.5 11.2 16 428-443 360-375 (429)
256 4b4t_R RPN7, 26S proteasome re 82.6 9.2 0.00031 35.5 10.6 98 308-405 133-237 (429)
257 1wdy_A 2-5A-dependent ribonucl 82.6 11 0.00039 32.0 10.9 43 353-396 191-236 (285)
258 1wdy_A 2-5A-dependent ribonucl 82.2 7.1 0.00024 33.4 9.4 117 349-474 153-276 (285)
259 3o48_A Mitochondria fission 1 81.5 14 0.00049 27.5 10.2 73 302-376 36-111 (134)
260 3ffl_A Anaphase-promoting comp 80.9 9.3 0.00032 29.8 8.2 28 412-439 121-148 (167)
261 3ffl_A Anaphase-promoting comp 79.7 8.9 0.0003 29.9 7.8 58 205-262 26-91 (167)
262 1zbp_A Hypothetical protein VP 79.5 7.6 0.00026 33.1 7.9 51 211-262 9-59 (273)
263 3esl_A Checkpoint serine/threo 78.1 25 0.00086 28.4 10.2 53 357-409 95-148 (202)
264 1y8m_A FIS1; mitochondria, unk 77.1 21 0.00073 26.9 12.6 69 373-443 36-107 (144)
265 3eiq_C Programmed cell death p 76.8 41 0.0014 30.1 13.6 25 133-157 58-82 (358)
266 3txn_A 26S proteasome regulato 75.0 50 0.0017 30.1 26.9 293 131-444 21-345 (394)
267 2uwj_G Type III export protein 74.0 20 0.00068 25.1 7.5 15 174-188 49-63 (115)
268 3lpz_A GET4 (YOR164C homolog); 73.8 48 0.0016 29.4 24.1 168 236-441 37-215 (336)
269 1k1a_A B-cell lymphoma 3-encod 73.4 15 0.00051 30.4 8.5 19 173-191 15-33 (241)
270 2p58_C Putative type III secre 73.3 21 0.00072 25.0 8.2 17 139-155 50-66 (116)
271 1y8m_A FIS1; mitochondria, unk 73.0 28 0.00096 26.3 12.1 72 303-376 36-110 (144)
272 1k1a_A B-cell lymphoma 3-encod 73.0 27 0.00093 28.7 10.1 16 316-331 86-101 (241)
273 2wpv_A GET4, UPF0363 protein Y 71.1 53 0.0018 28.7 20.3 167 131-333 35-215 (312)
274 2wpv_A GET4, UPF0363 protein Y 64.5 73 0.0025 27.9 22.9 168 236-441 35-216 (312)
275 3ltm_A Alpha-REP4; protein eng 63.4 56 0.0019 26.2 18.7 110 128-249 63-172 (211)
276 3hra_A Ankyrin repeat family p 63.3 20 0.00068 28.6 7.0 43 431-473 156-200 (201)
277 2uwj_G Type III export protein 63.3 36 0.0012 23.8 8.3 83 109-202 21-105 (115)
278 2p58_C Putative type III secre 62.3 37 0.0013 23.8 9.4 83 144-237 22-106 (116)
279 1n11_A Ankyrin; clathrin, BAND 62.2 51 0.0017 30.3 10.4 17 172-188 118-134 (437)
280 3esl_A Checkpoint serine/threo 62.1 61 0.0021 26.1 12.1 56 284-339 92-148 (202)
281 3eu9_A Huntingtin-interacting 61.6 15 0.0005 30.3 6.0 16 351-366 217-232 (240)
282 4a1g_A Mitotic checkpoint seri 60.9 54 0.0018 25.1 9.3 56 393-449 82-137 (152)
283 3eu9_A Huntingtin-interacting 60.3 38 0.0013 27.6 8.5 22 384-405 215-236 (240)
284 1n11_A Ankyrin; clathrin, BAND 59.9 62 0.0021 29.7 10.6 330 100-473 17-366 (437)
285 4fke_A Aminopeptidase N; zinc 57.2 1.8E+02 0.0062 30.0 17.3 92 239-335 691-787 (909)
286 3b7b_A Euchromatic histone-lys 56.8 39 0.0013 27.7 7.9 20 422-441 216-235 (237)
287 3jxi_A Vanilloid receptor-rela 56.6 11 0.00038 31.8 4.4 18 455-472 229-246 (260)
288 2d2s_A Exocyst complex compone 55.7 50 0.0017 27.5 8.0 25 200-224 92-116 (235)
289 2zu6_B Programmed cell death p 55.0 53 0.0018 28.7 8.4 62 344-409 169-235 (307)
290 1qsa_A Protein (soluble lytic 54.3 1.6E+02 0.0056 28.7 31.5 88 86-179 64-151 (618)
291 3pvs_A Replication-associated 54.1 1.4E+02 0.0047 27.7 12.5 54 211-264 267-325 (447)
292 1ug3_A EIF4GI, eukaryotic prot 53.8 74 0.0025 28.2 9.4 25 237-261 14-38 (339)
293 2wvi_A Mitotic checkpoint seri 53.4 77 0.0026 24.6 9.4 54 395-449 79-132 (164)
294 3eiq_C Programmed cell death p 52.8 1.3E+02 0.0044 26.9 14.2 72 167-241 57-130 (358)
295 4g8k_A 2-5A-dependent ribonucl 51.1 1.2E+02 0.0042 26.3 11.5 19 135-153 28-46 (337)
296 2d2s_A Exocyst complex compone 50.9 91 0.0031 25.9 8.9 30 232-261 89-118 (235)
297 3t8k_A Uncharacterized protein 50.8 89 0.003 24.6 8.7 63 171-233 42-108 (186)
298 2xig_A Ferric uptake regulatio 50.8 63 0.0022 24.6 7.4 63 400-465 16-78 (150)
299 2zu6_B Programmed cell death p 49.8 1.3E+02 0.0045 26.2 12.9 65 275-340 170-236 (307)
300 3jxi_A Vanilloid receptor-rela 48.5 12 0.00043 31.4 3.4 15 352-366 233-247 (260)
301 3kea_A K1L; tropism, ANK repea 48.1 53 0.0018 28.1 7.5 19 136-154 35-53 (285)
302 3t8k_A Uncharacterized protein 47.6 1E+02 0.0034 24.3 9.9 159 281-444 13-182 (186)
303 2fe3_A Peroxide operon regulat 46.6 56 0.0019 24.6 6.5 63 400-465 11-73 (145)
304 1zbp_A Hypothetical protein VP 46.5 1.4E+02 0.0047 25.5 15.5 115 242-369 5-128 (273)
305 3hra_A Ankyrin repeat family p 46.5 69 0.0024 25.2 7.6 12 327-338 159-170 (201)
306 1ug3_A EIF4GI, eukaryotic prot 46.2 1.5E+02 0.0052 26.2 10.2 25 133-157 15-39 (339)
307 2nsz_A Programmed cell death p 45.4 89 0.003 23.0 7.3 65 167-232 10-76 (129)
308 3c1d_A Protein ORAA, regulator 45.4 1E+02 0.0035 23.7 12.0 48 358-407 47-94 (159)
309 1mzb_A Ferric uptake regulatio 45.2 58 0.002 24.2 6.3 62 401-465 8-70 (136)
310 3ltj_A Alpharep-4; protein eng 44.9 1.1E+02 0.0038 24.0 19.9 122 128-262 58-179 (201)
311 3aji_A 26S proteasome non-ATPa 44.9 84 0.0029 25.4 8.1 15 174-188 13-27 (231)
312 4a1g_A Mitotic checkpoint seri 41.9 1.1E+02 0.0039 23.3 11.2 50 290-339 84-134 (152)
313 3kea_A K1L; tropism, ANK repea 41.8 71 0.0024 27.2 7.3 46 104-153 38-83 (285)
314 4aez_C MAD3, mitotic spindle c 41.7 63 0.0021 26.6 6.2 52 394-446 132-183 (223)
315 2fe3_A Peroxide operon regulat 41.5 83 0.0028 23.7 6.7 57 333-390 14-70 (145)
316 2rfa_A Transient receptor pote 40.2 1.4E+02 0.0049 23.9 9.7 21 316-336 161-181 (232)
317 4g8k_A 2-5A-dependent ribonucl 40.2 1.8E+02 0.0063 25.2 12.2 49 101-153 29-80 (337)
318 4ets_A Ferric uptake regulatio 40.0 84 0.0029 24.3 6.6 62 401-465 23-86 (162)
319 2w57_A Ferric uptake regulatio 40.0 68 0.0023 24.4 6.0 63 400-465 6-69 (150)
320 2keb_A DNA polymerase subunit 39.9 92 0.0031 21.6 5.9 58 111-170 26-88 (101)
321 2fu4_A Ferric uptake regulatio 39.8 78 0.0027 20.8 6.0 62 401-465 7-69 (83)
322 4aez_C MAD3, mitotic spindle c 39.0 60 0.002 26.7 5.7 73 88-163 111-184 (223)
323 3mv2_A Coatomer subunit alpha; 38.8 1.7E+02 0.0059 25.6 8.8 18 317-334 125-142 (325)
324 2ion_A PDCD4, programmed cell 38.4 1.3E+02 0.0045 22.9 8.9 64 238-304 13-78 (152)
325 3eyy_A Putative iron uptake re 37.7 57 0.002 24.6 5.3 62 400-465 8-69 (145)
326 2xig_A Ferric uptake regulatio 37.6 82 0.0028 23.9 6.2 58 332-390 18-75 (150)
327 1mzb_A Ferric uptake regulatio 37.0 78 0.0027 23.5 5.9 57 333-390 10-67 (136)
328 2ion_A PDCD4, programmed cell 37.0 80 0.0027 24.1 5.9 64 167-231 12-77 (152)
329 2f6m_A Suppressor protein STP2 36.3 52 0.0018 20.9 3.8 42 380-424 6-47 (65)
330 3aji_A 26S proteasome non-ATPa 35.4 1.3E+02 0.0043 24.3 7.6 181 240-447 9-199 (231)
331 1bpo_A Protein (clathrin); cla 35.4 2.8E+02 0.0095 25.8 13.0 64 130-194 362-425 (494)
332 3eyy_A Putative iron uptake re 35.1 74 0.0025 24.0 5.5 33 358-390 34-66 (145)
333 2b7e_A PRE-mRNA processing pro 35.0 41 0.0014 20.9 3.1 29 430-458 3-31 (59)
334 2o03_A Probable zinc uptake re 34.9 54 0.0018 24.2 4.6 48 418-465 15-62 (131)
335 2nsz_A Programmed cell death p 34.8 1.3E+02 0.0046 22.0 10.3 65 238-305 11-77 (129)
336 4gq2_M Nucleoporin NUP120; bet 34.3 4.1E+02 0.014 27.5 14.8 51 235-285 898-950 (950)
337 3pvs_A Replication-associated 33.6 2.9E+02 0.0099 25.5 13.7 140 249-407 166-326 (447)
338 3ltm_A Alpha-REP4; protein eng 33.6 1.8E+02 0.0061 23.0 19.7 154 127-299 31-184 (211)
339 4gq2_M Nucleoporin NUP120; bet 33.5 2.9E+02 0.0098 28.7 11.2 110 347-462 816-950 (950)
340 2ijq_A Hypothetical protein; s 33.3 1.7E+02 0.0057 22.6 8.2 52 176-227 44-103 (161)
341 3mwm_A ZUR, putative metal upt 33.3 53 0.0018 24.6 4.4 49 417-465 17-65 (139)
342 4b4t_S RPN3, 26S proteasome re 33.2 1.5E+02 0.005 28.2 8.0 16 392-407 416-431 (523)
343 2f8y_A Notch homolog 1, transl 32.4 1.9E+02 0.0064 23.0 8.8 181 277-474 28-214 (223)
344 2w57_A Ferric uptake regulatio 32.4 88 0.003 23.7 5.6 33 358-390 34-66 (150)
345 4ets_A Ferric uptake regulatio 31.8 1.2E+02 0.0039 23.5 6.2 43 137-179 40-84 (162)
346 3d5l_A Regulatory protein RECX 31.8 2.1E+02 0.0072 23.4 10.5 15 359-373 94-108 (221)
347 3b7b_A Euchromatic histone-lys 31.4 1E+02 0.0035 25.0 6.4 18 387-404 218-235 (237)
348 2dzn_A Probable 26S proteasome 30.7 64 0.0022 26.1 5.0 54 241-301 6-59 (228)
349 3kae_A CDC27, possible protein 30.5 2E+02 0.0068 22.6 9.6 59 131-195 34-93 (242)
350 3bge_A Predicted ATPase; struc 30.2 2.1E+02 0.0073 22.9 8.9 54 353-406 19-77 (201)
351 2ijq_A Hypothetical protein; s 30.2 1.9E+02 0.0065 22.3 8.4 51 319-369 45-103 (161)
352 1bd8_A P19INK4D CDK4/6 inhibit 29.7 86 0.0029 23.3 5.3 13 459-471 141-153 (156)
353 2r9g_A AAA ATPase, central reg 29.4 2.2E+02 0.0076 22.9 9.1 92 170-262 17-116 (204)
354 2rfa_A Transient receptor pote 29.0 2.2E+02 0.0076 22.7 9.6 23 422-444 160-182 (232)
355 3twr_A Tankyrase-2; ankyrin re 27.8 1.1E+02 0.0036 23.1 5.6 121 313-448 12-136 (165)
356 2wvi_A Mitotic checkpoint seri 27.4 2.2E+02 0.0074 22.1 11.4 50 290-339 79-129 (164)
357 4b4t_O 26S proteasome regulato 27.1 3.5E+02 0.012 24.4 10.2 57 312-368 82-154 (393)
358 2f6m_A Suppressor protein STP2 27.0 1.2E+02 0.0042 19.1 4.5 45 97-142 5-49 (65)
359 3ctd_A Putative ATPase, AAA fa 25.9 2.7E+02 0.0091 22.6 9.3 61 347-407 38-106 (213)
360 1bpo_A Protein (clathrin); cla 25.6 4.1E+02 0.014 24.7 10.9 83 213-301 343-425 (494)
361 3qil_A Clathrin heavy chain 1; 24.7 48 0.0017 24.1 2.5 52 379-435 35-86 (125)
362 2etb_A Transient receptor pote 24.7 94 0.0032 25.7 5.1 16 423-438 228-243 (256)
363 2y1l_E Darpin-8.4; hydrolase-i 24.4 2.3E+02 0.0078 21.3 7.4 17 456-472 151-167 (169)
364 2dzn_A Probable 26S proteasome 24.2 2.2E+02 0.0075 22.6 7.2 15 105-119 10-24 (228)
365 2yru_A Steroid receptor RNA ac 23.6 1.6E+02 0.0054 21.3 5.2 42 116-157 48-89 (118)
366 2crb_A Nuclear receptor bindin 23.0 1.4E+02 0.0049 20.4 4.4 27 414-440 16-42 (97)
367 1bd8_A P19INK4D CDK4/6 inhibit 22.3 94 0.0032 23.1 4.2 15 140-154 10-24 (156)
368 3ljn_A Hypothetical protein; a 22.2 2.5E+02 0.0085 24.6 7.7 47 387-438 219-266 (364)
369 3f3f_C Nucleoporin NUP85; stru 22.2 2.7E+02 0.0093 26.6 7.7 87 97-185 482-570 (570)
370 3ygs_P Procaspase 9; apoptosis 21.9 1.5E+02 0.0052 20.4 4.7 35 321-359 52-86 (97)
371 3dfg_A Xcrecx, regulatory prot 21.7 2.8E+02 0.0094 21.3 10.8 25 447-471 131-156 (162)
372 1rw2_A ATP-dependent DNA helic 21.5 1.1E+02 0.0038 23.4 4.2 21 31-51 36-56 (152)
373 3qil_A Clathrin heavy chain 1; 21.5 65 0.0022 23.5 2.6 53 96-151 34-86 (125)
374 3ltj_A Alpharep-4; protein eng 21.3 2.9E+02 0.01 21.5 20.9 152 128-298 27-178 (201)
375 3twr_A Tankyrase-2; ankyrin re 21.3 2.1E+02 0.0071 21.3 6.1 15 139-153 15-29 (165)
376 2o03_A Probable zinc uptake re 21.1 1.4E+02 0.0048 21.9 4.7 9 182-190 28-36 (131)
377 1wgl_A TOLL-interacting protei 21.0 1.6E+02 0.0054 18.2 4.5 21 177-197 36-56 (59)
378 3mwm_A ZUR, putative metal upt 20.2 1.2E+02 0.0042 22.5 4.3 13 180-192 29-41 (139)
379 2keb_A DNA polymerase subunit 20.1 2.3E+02 0.0078 19.7 6.8 31 290-320 28-58 (101)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-33 Score=280.19 Aligned_cols=402 Identities=9% Similarity=-0.060 Sum_probs=303.1
Q ss_pred CHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHH
Q 011905 58 DSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136 (475)
Q Consensus 58 ~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 136 (475)
+...+..+++.+ ..++.+.|+.+|..+.. ..|+...+..++..+...|+++.|..+++.+... +++..+++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 334455555554 57788888888877653 2356677778888888889999998888876543 67888888888
Q ss_pred HHHHhcCCHHHHHHHHHhccc-C--------------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCC------
Q 011905 137 NLCEKARLANEAMWVLRKMPE-F--------------DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL------ 195 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~-~--------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~------ 195 (475)
.+|.+.|++++|.++|+++.. . +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 889999999999998885432 2 2344678888888888888888888888888765331
Q ss_pred ----------------------------------------------------------------CCChhhHHHHHHHHHh
Q 011905 196 ----------------------------------------------------------------YPDIITYVSMIKGFCN 211 (475)
Q Consensus 196 ----------------------------------------------------------------~~~~~~~~~li~~~~~ 211 (475)
+++..+|+.++.++.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 2455566666666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 011905 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 291 (475)
.|++++|.++|+++.+.+. .+..++..++.+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.
T Consensus 318 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH---PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHhccHHHHH
Confidence 7777777777777666542 255666667777777777777777777766532 456778888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 371 (475)
++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888887653 33577888888888888888888888888887653 356778888888888888888888888888653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 372 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
..+..+|+.+...|.+.|++++|.++|+++.+. +..|.....+|..++.+|.+.|++++|.++++++.+.+ +.+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 346788888888888888888888888888776 44442116788888888888888888888888888877 667
Q ss_pred hhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 448 GPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..++..+..+|.+.|++++|.+.++
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888888888888877654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-32 Score=273.18 Aligned_cols=368 Identities=9% Similarity=-0.062 Sum_probs=312.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 171 (475)
++...|+.++..+.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56788999999999999999999999999854 678899999999999999999999999999653 67899999999
Q ss_pred HHHHhcCChhHHHHHHHHhccC---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------
Q 011905 172 RLFCEKGDMIAADELMKGMGLI---------------DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC------ 230 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~------ 230 (475)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999964322 2234688999999999999999999999999876432
Q ss_pred ----------------------------------------------------------------CcCHHHHHHHHHHHHh
Q 011905 231 ----------------------------------------------------------------AANLVAYSALLDGICR 246 (475)
Q Consensus 231 ----------------------------------------------------------------~~~~~~~~~ll~~~~~ 246 (475)
+++..+++.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 1566677777788888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 326 (475)
.|++++|.++|+++.+.+ +.+..+|+.++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|.
T Consensus 318 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 888888888888887643 3466777888888888888888888888887543 456788899999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
++|+++.+.+.. +..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..++..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999875432 57789999999999999999999999998764 3477889999999999999999999999999865
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIWLQ--GPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|.++++
T Consensus 472 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 472 ---QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 237788999999999999999999999999886 65676 6789999999999999999988764
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.9e-32 Score=258.84 Aligned_cols=206 Identities=16% Similarity=0.173 Sum_probs=135.7
Q ss_pred HHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC---------H
Q 011905 146 NEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR---------L 215 (475)
Q Consensus 146 ~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---------~ 215 (475)
..+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..|||.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445555666665554443 34667777777777777777777777777777777777777777766543 5
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011905 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+ .++.||..+|+.+|.+|++.|++++|.++|+
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~--~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA--FGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777776 3456777777777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011905 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
+|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777777777766654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.6e-32 Score=261.12 Aligned_cols=205 Identities=12% Similarity=0.133 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC---------
Q 011905 217 DACGLFKVMKRHGCAANL-VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM--------- 286 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------- 286 (475)
.+..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+. |++||..+||.+|.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN--GVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 344455555555544333 24566666666666666666666666663 356666666666666665443
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (475)
+++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011905 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 367 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (475)
|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..| +..||+.++..|+.
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p--s~~T~~~l~~~F~s 222 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV--SKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB--CHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666655 55666666666554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.9e-26 Score=217.81 Aligned_cols=377 Identities=14% Similarity=0.032 Sum_probs=322.7
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.++.+.|.+.+....... +.+...+..+...+...++++.|...++...+.. +.+..+|..+...+.+.|++++|..
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 677888888876654432 2345666677778888999999999999888765 6788999999999999999999999
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011905 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
.|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+..
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 999998754 3456789999999999999999999999998754 3345667788888999999999999999998874
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+.+..+|..+...+.+.|++++|.+.|+++.+.. +.+...|..+...+...|++++|+..+++..... +.+..++.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 3367899999999999999999999999999854 4567788999999999999999999999988763 33578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+..++.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987643 56789999999999999999999999998763 457889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011905 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
++++|...++++.+.. | .+..++..+...|.+.|++++|.+.++++++.. |.+...+..+...+.+.|+
T Consensus 320 ~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF--P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSC--T-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcC--C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999998864 2 467889999999999999999999999999876 6677788888888777663
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.2e-26 Score=219.27 Aligned_cols=358 Identities=13% Similarity=0.021 Sum_probs=312.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh
Q 011905 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 180 (475)
...+...|+++.|.+.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+...|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 345567899999999999988764 5567777778889999999999999999988754 56888999999999999999
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011905 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
++|.+.|+++.... +.+..+|..+..++.+.|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998754 44566899999999999999999999999998752 35667788889999999999999999999
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011905 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340 (475)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 340 (475)
.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++....... +
T Consensus 162 l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 162 IETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 8853 4567899999999999999999999999999864 335778889999999999999999999999886543 5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
..++..+...|...|++++|.+.|+++.+.+ +.+..++..+...+.+.|++++|...++++.+.. +.+..+|..+.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~ 312 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLA 312 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHH
Confidence 7789999999999999999999999999864 2356789999999999999999999999999875 34788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+.+.|++++|.+.++++++.. +.+...+..+...+.+.|++++|.+.++
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999875 6778899999999999999999987764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.4e-22 Score=195.21 Aligned_cols=366 Identities=11% Similarity=0.001 Sum_probs=293.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 171 (475)
.+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345667777888889999999999999998764 5678999999999999999999999999998865 34688999999
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCCh---hhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 011905 172 RLFCEKGDMIAADELMKGMGLIDLYPDI---ITYVSM------------IKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 236 (475)
.++.+.|++++|.+.|+++.... +.+. ..+..+ ...+...|++++|...|+.+.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 99999999999999999998754 2333 555555 344889999999999999998864 347889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----
Q 011905 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL---- 312 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l---- 312 (475)
+..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|+..|+++.... +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 9999999999999999999999998753 4678899999999999999999999999998753 2234444444
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHhCCCCC-C--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011905 313 --------IKGFCVEGNLDEAYQLIDKVVAGGSVS-S--GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 313 --------i~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 381 (475)
...+.+.|++++|...|+.+.+..... . ...|..+...+.+.|++++|+..++++.+.. +.+...+..
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 788999999999999999998854321 1 3478889999999999999999999998753 336789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH------------HHhcC-----CHHHHHHHHHHHH-HcC
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG------------LCRKN-----HSVEAAKLARFML-KKR 443 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m~-~~~ 443 (475)
+..+|...|++++|...++++.+.. | .+...+..+..+ |...| +.+++.+.++++. +..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN--E-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS--S-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--c-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999854 3 356677766633 33344 6677888888743 332
Q ss_pred C--CCCh-------hhHHHHHHHHHhcCCHhHHhh
Q 011905 444 I--WLQG-------PYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 444 ~--~~~~-------~~~~~l~~~~~~~g~~~~a~~ 469 (475)
. .++. ..+..+..+|...|+.+...+
T Consensus 412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 1 1222 377888999999998877654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=8.8e-23 Score=196.64 Aligned_cols=320 Identities=12% Similarity=0.068 Sum_probs=271.3
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 205 (475)
+.+...+..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++...|++++|.+.|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 5677889999999999999999999999998754 4578899999999999999999999999998765 5568889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCCc
Q 011905 206 IKGFCNAGRLEDACGLFKVMKRHGCAANL---VAYSAL------------LDGICRLGSMERALELLGEMEKEGGDCSPN 270 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (475)
..++.+.|++++|...|+++.+... .+. ..+..+ ...+.+.|++++|.+.|+++.+.. +.+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~ 176 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWD 176 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC
Confidence 9999999999999999999998642 233 555555 444889999999999999998853 467
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH---
Q 011905 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL--- 347 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 347 (475)
..++..+..+|.+.|++++|++.|+++.+.. +.+..++..+..+|...|++++|...|+++.+.... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 8889999999999999999999999998763 446889999999999999999999999999875433 34444444
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 011905 348 ---------VVELVRTKRLKEAEKLFSKMLASGVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413 (475)
Q Consensus 348 ---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 413 (475)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+.
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---p~~~ 329 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME---PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccH
Confidence 78899999999999999999875 454 4478888899999999999999999998864 2467
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
.+|..+..+|...|++++|.+.++++++.. |.+...+..+..+..
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 899999999999999999999999999876 556677776664433
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-22 Score=198.50 Aligned_cols=359 Identities=12% Similarity=-0.060 Sum_probs=203.4
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|...|....... |+...|..+...+...|+++.|...++.+.+.+ +.+..++..+..++.+.|++++|.
T Consensus 18 ~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4677888888887776544 467777777888888888888888888877765 556677777888888888888888
Q ss_pred HHHHhcccCCCCCCHhh---------------------------------------------------------------
Q 011905 150 WVLRKMPEFDLRPDTII--------------------------------------------------------------- 166 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~--------------------------------------------------------------- 166 (475)
..|+++.+.+. ++...
T Consensus 94 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 94 FDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 88888766542 12111
Q ss_pred ----------------HHHHHHHHHh---cCChhHHHHHHHHhcc-----CCC--------CCChhhHHHHHHHHHhcCC
Q 011905 167 ----------------YNNVIRLFCE---KGDMIAADELMKGMGL-----IDL--------YPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 167 ----------------~~~ll~~~~~---~g~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~li~~~~~~~~ 214 (475)
+..+...+.. .|++++|...|+++.. ..- +.+..++..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 1122222222 4555566666555544 210 1123344555555555566
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++|...++.+.+.. |+...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 253 ~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 253 PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 666666665555543 225555555555556666666666665555432 234445555555555566666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C
Q 011905 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-K 373 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~ 373 (475)
++..+.. +.+...+..+...+...|++++|...++.+.+.... +..++..+...+...|++++|...++++.+... .
T Consensus 328 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 5555442 223445555555555556666666666555543321 334455555555556666666665555543210 1
Q ss_pred CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 374 PD----GLACSVMIRELCL---GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 374 p~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 11 2245555555555 566666666666555543 1244555555555556666666666666555554
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-21 Score=191.96 Aligned_cols=366 Identities=11% Similarity=-0.086 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH
Q 011905 95 FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174 (475)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 174 (475)
..+......+...|+++.|...++.+.+.. |+...|..+..++.+.|++++|+..++++.+.+ +.+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345566677888999999999999999876 689999999999999999999999999998765 45678999999999
Q ss_pred HhcCChhHHHHHHHHhccCCC-----------------------------------------------------------
Q 011905 175 CEKGDMIAADELMKGMGLIDL----------------------------------------------------------- 195 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~~----------------------------------------------------------- 195 (475)
.+.|++++|...|+++...+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999998865431
Q ss_pred -------------------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CcCHHHHHHH
Q 011905 196 -------------------YPDIITYVSMIKGFCN---AGRLEDACGLFKVMKR-----HGC--------AANLVAYSAL 240 (475)
Q Consensus 196 -------------------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~l 240 (475)
+.+...+......+.. .|++++|...|+++.+ ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1114445555555554 8999999999999988 311 2346678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011905 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 320 (475)
...+...|++++|.+.++++.+.. |+...+..+...+...|++++|...++++.... +.+...+..+...+...|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998853 347888899999999999999999999998764 346778899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 400 (475)
++++|...++...+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987644 56778899999999999999999999998753 2346788888999999999999999999
Q ss_pred HHHHcCCCCCCc----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 401 DIEKIGFLSSVD----SDIHSVLLLGLCR---KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 401 ~~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
++.+..... ++ ...|..+...+.. .|++++|.+.+++++... +.+...+..+...+.+.|+++.|.+.++
T Consensus 397 ~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 397 LAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998753211 11 3389999999999 999999999999999887 6778889999999999999999987764
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.4e-20 Score=183.82 Aligned_cols=385 Identities=12% Similarity=0.011 Sum_probs=193.3
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|...|....... +.+...+..+...+...|+++.|.+.++.+.+.+ +.+..++..+..++...|++++|.
T Consensus 37 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 5778888888887776543 2467778888888888889999999888888765 557788888888888889999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC------CCCChh-----------------------
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID------LYPDII----------------------- 200 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~----------------------- 200 (475)
..|+.+.. .|+.. +..+..+...+....|...++++.... ..|+..
T Consensus 114 ~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 114 FDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 88864432 12211 111222222333333444444432210 001110
Q ss_pred -------hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCcC-------HHHHHHHHHHHHhcCChHHHHHHHH
Q 011905 201 -------TYVSMIKGFCN--------AGRLEDACGLFKVMKRHGCAAN-------LVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 201 -------~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
....+...+.. .|++++|..+++.+.+.... + ..++..+...+...|++++|.+.++
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 01111111110 12455555555555443211 1 1233444444555555555555555
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011905 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 338 (475)
++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.+..
T Consensus 268 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 268 ESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 55543 2334445555555555555555555555555432 223445555555555555555555555555543322
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CCchhh
Q 011905 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS---SVDSDI 415 (475)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~ 415 (475)
+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..... ......
T Consensus 343 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 343 -NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp -CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 23445555555555555555555555555432 1223344455555555555555555555554432100 001111
Q ss_pred HHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 416 HSVLLLGLCRK----------NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 416 ~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+......+.+. |++++|.+.++++++.. +.+...+..+...+.+.|++++|.+.+
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22333344444 55555555555555544 344455555555555555555554443
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=8.4e-20 Score=169.87 Aligned_cols=319 Identities=11% Similarity=0.050 Sum_probs=201.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
.+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 34444444555555555555555544432 2234455555555555555555555555554432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--cCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCA--ANLVAYSAL------------LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 276 (475)
..|++++|...++.+.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 159 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDAELREL 159 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCchHHHHH
Confidence 555555555555555443210 122222222 456667777777777777776642 345666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----------
Q 011905 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS----------- 345 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 345 (475)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.... +...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 7777777777777777777776653 335666777777777777777777777777664432 222222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 346 -SLVVELVRTKRLKEAEKLFSKMLASGVKPD-G----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 346 -~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
.+...+.+.|++++|...++++.+.. |+ . ..+..+...+...|++++|...+++..+.. +.+..+|..+
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ 312 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME---PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccHHHHHHH
Confidence 33666888999999999999988753 33 2 224456678889999999999999998864 2367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011905 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
...+...|++++|.+.++++++.. |.+......+..+....+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHH
Confidence 999999999999999999999876 566666777666655443
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.4e-18 Score=171.12 Aligned_cols=356 Identities=12% Similarity=-0.026 Sum_probs=269.3
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|.+.|....... +.+...+..+...+...|+++.|...++.+ .. .|+. ....+..+...+...+|.
T Consensus 71 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 71 STGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHH
Confidence 5789999999998876543 346778888899999999999999999743 22 2221 122244455555567788
Q ss_pred HHHHhcccCC------CCCCHh------------------------------hHHHHHHHHHh--------cCChhHHHH
Q 011905 150 WVLRKMPEFD------LRPDTI------------------------------IYNNVIRLFCE--------KGDMIAADE 185 (475)
Q Consensus 150 ~~~~~m~~~~------~~~~~~------------------------------~~~~ll~~~~~--------~g~~~~a~~ 185 (475)
..++.+.... ..|+.. ....+...+.. .|++++|..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 8888775531 111111 12222222221 247899999
Q ss_pred HHHHhccCCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011905 186 LMKGMGLIDLYPD-------IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 186 ~~~~m~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
+++++.+.. +.+ ..++..+...+...|++++|...++.+.+. .|+...+..+...|...|++++|.+.++
T Consensus 224 ~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 224 MYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998754 222 234667778888999999999999999987 4568889999999999999999999999
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011905 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 338 (475)
++.+.. +.+..+|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+....
T Consensus 301 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 301 KAVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 998853 4567889999999999999999999999998864 335678889999999999999999999999887533
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHH
Q 011905 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG-----VKPDGLACSVMIRELCLG----------GQVLEGFCLYEDIE 403 (475)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~ 403 (475)
+...+..+...+...|++++|.+.|+++.+.. .......+..+...+... |++++|...++++.
T Consensus 377 -~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 377 -LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 56688999999999999999999999987642 111112233444566777 99999999999999
Q ss_pred HcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 404 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+.. +.+..+|..+...|.+.|++++|.+.|+++++..
T Consensus 456 ~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 456 ELD---PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 875 2467889999999999999999999999999886
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.6e-18 Score=161.13 Aligned_cols=318 Identities=10% Similarity=-0.005 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011905 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 173 (475)
...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4556677788888999999999999998865 5678899999999999999999999999988754 3467889999999
Q ss_pred HHhcCChhHHHHHHHHhccCCCC---CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011905 174 FCEKGDMIAADELMKGMGLIDLY---PDIITYVSM------------IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...|++++|.+.|+++.... + .+...+..+ ...+...|++++|...++.+.+.. +.+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999998654 2 244445444 578889999999999999998875 34788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--------
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS-------- 310 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------- 310 (475)
.+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999853 5678889999999999999999999999988763 22333332
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011905 311 ----TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG----GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 311 ----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.+...+.+.|++++|...++.+.+.... +. ..+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 2356688999999999999999886543 22 335567889999999999999999998753 3367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
...+...|++++|...++++.+.. | .+...+..+..+..
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHN--E-NDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--T-TCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--C-CChHHHHHHHHHHH
Confidence 999999999999999999999864 2 35666666655543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.8e-19 Score=164.35 Aligned_cols=295 Identities=12% Similarity=-0.044 Sum_probs=225.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 011905 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240 (475)
Q Consensus 161 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 240 (475)
+.+...+..+...+...|++++|.++|+++.... +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4456667777778888888888888888877654 4455667777788888888888888888887764 3356778888
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011905 241 LDGICRLG-SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 241 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 88888888 8888888888888743 3456778888888888888888888888887764 22456666788888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCC
Q 011905 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG--------VKPDGLACSVMIRELCLGGQ 391 (475)
Q Consensus 320 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~ 391 (475)
|++++|...+++..+.... +...+..+...+...|++++|...++++.+.. ...+...+..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 8888888888888876543 56778888888889999999999888887531 12234678888888899999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCCHhH
Q 011905 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL-KKSGDEEL 466 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 466 (475)
+++|...++++.+.. +.+...|..+...+.+.|++++|.+.++++++.. +.+...+..+..++ ...|+.+.
T Consensus 252 ~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 252 YAEALDYHRQALVLI---PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchhc
Confidence 999999999988865 2367788889999999999999999999988776 56777788888877 45565543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=4.4e-19 Score=165.91 Aligned_cols=286 Identities=14% Similarity=0.019 Sum_probs=186.3
Q ss_pred CChhHHHH-HHHHhccCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011905 178 GDMIAADE-LMKGMGLIDL---YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 178 g~~~~a~~-~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
|++++|.+ .+++...... ..+...+..+...+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 55555555 5554433210 0123445555566666666666666666665543 22455566666666666666666
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHh
Q 011905 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST---------------LIKGFCV 318 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---------------li~~~~~ 318 (475)
.+.|+++.+.. +.+..++..+...+...|++++|.+.++++...... +...+.. .+..+..
T Consensus 118 ~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 118 ISALRRCLELK---PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 66666665532 334555666666666666666666666666554211 1111110 2333347
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011905 319 EGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 319 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 397 (475)
.|++++|...++++.+..... +..++..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888988888888765432 46778888888889999999999998888653 3356788888888888999999999
Q ss_pred HHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------hhhHHHHHHHHHhcCCHhH
Q 011905 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ-----------GPYVDKIVEHLKKSGDEEL 466 (475)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~ 466 (475)
.++++.+.. +.+..+|..+..+|.+.|++++|.+.++++++.. +.+ ..++..+..++...|+.+.
T Consensus 273 ~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 273 AYRRALELQ---PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999888864 2367788888899999999999999998888754 222 6788889999999999998
Q ss_pred Hhhcccc
Q 011905 467 ITNLPKI 473 (475)
Q Consensus 467 a~~l~~~ 473 (475)
|..+.+.
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 8877654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.4e-18 Score=159.64 Aligned_cols=294 Identities=9% Similarity=-0.083 Sum_probs=223.5
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 205 (475)
+.+...+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++++.... +.+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4455667777778888888888888888887654 3455667777788888888888888888887654 4466778888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011905 206 IKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 206 i~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
...+...| ++++|...|++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHH
Confidence 88888888 8888888888888764 3356778888888888888888888888888753 33456677788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCC
Q 011905 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--------SVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 356 (475)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. ......++..+...|...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 88888888888887763 3456778888888888899999988888887632 12234678888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH-HhcCCHH
Q 011905 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL-CRKNHSV 430 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 430 (475)
+++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. | .+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--R-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--S-CCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--C-CchHHHHHHHHHHHHHhCchh
Confidence 999999998888653 2355677888888888999999999998887754 2 3667777777777 3455543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=8.2e-16 Score=149.50 Aligned_cols=338 Identities=13% Similarity=0.002 Sum_probs=250.8
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHh----c
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI----KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----A 142 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 142 (475)
.++...|...|...... + +...+..+...+.. .++.+.|.+.++...+.| +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 57778888887777654 2 45566666666666 778888888888877765 55666667777777 6
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCC
Q 011905 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE----KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN----AGR 214 (475)
Q Consensus 143 ~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~ 214 (475)
+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 78888888888887754 56677777777776 678888888888877654 56677777777776 788
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCC
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGM 286 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 286 (475)
.++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .++
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-----NSIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHCCCCCCCC
Confidence 888888888887764 56677777777775 778888888888887742 45566666666766 788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHH
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVE-----GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK---RLK 358 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~ 358 (475)
.++|+..|++..+.| +...+..+...|... +++++|...++...+.+ +...+..+...|...| +.+
T Consensus 275 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 275 PLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 888888888877654 455666677777776 78888888888888765 3456667777777655 678
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHH
Q 011905 359 EAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSV 430 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 430 (475)
+|++.|++..+.| +...+..|-..|.. .++.++|...|++..+.+ +...+..+...|.. .++++
T Consensus 349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-----LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 8888888887763 45667777777777 678888888888888765 45667778777777 78888
Q ss_pred HHHHHHHHHHHcC
Q 011905 431 EAAKLARFMLKKR 443 (475)
Q Consensus 431 ~A~~~~~~m~~~~ 443 (475)
+|.++|++..+.+
T Consensus 421 ~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 421 QAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 8888888888876
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=2.1e-18 Score=161.20 Aligned_cols=293 Identities=13% Similarity=-0.014 Sum_probs=230.8
Q ss_pred hcCCHHHHHH-HHHhcccCCC---CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 141 KARLANEAMW-VLRKMPEFDL---RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 141 ~~~~~~~A~~-~~~~m~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..|++++|.+ .|++...... ..+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3578899998 8887665421 1135678889999999999999999999998765 567788999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH---------------HHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS---------------VIQIF 281 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------------li~~~ 281 (475)
+|...|+++.+.. +.+..++..+...|...|++++|.+.++++.... +.+...+.. .+..+
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT---PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999998875 3478899999999999999999999999998853 222222221 23344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 282 CGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
...|++++|...++++.+..... +..++..+...+...|++++|...++++.+.... +..++..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998764221 5788999999999999999999999999886532 567899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------CCchhhHHHHHHHHHhcCCHHHH
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS--------SVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A 432 (475)
...|+++.+.. +.+...+..+...|...|++++|...++++.+..... +....+|..+..+|...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998753 3457888999999999999999999999998753110 11268899999999999999999
Q ss_pred HHHHHHHH
Q 011905 433 AKLARFML 440 (475)
Q Consensus 433 ~~~~~~m~ 440 (475)
..++++.+
T Consensus 350 ~~~~~~~l 357 (368)
T 1fch_A 350 GAADARDL 357 (368)
T ss_dssp HHHHTTCH
T ss_pred HHhHHHHH
Confidence 99876443
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.7e-18 Score=161.80 Aligned_cols=265 Identities=12% Similarity=-0.019 Sum_probs=191.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 011905 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277 (475)
Q Consensus 198 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 277 (475)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 34456677777777777777777777777654 3366777777777777777777777777777642 3456677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHH
Q 011905 278 IQIFCGKGMMKEALGILDRMEALGCAPN-----------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYS 345 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 345 (475)
...|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+..... +..++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 777777777777777777776542 21 2223345677888888999999998888765432 567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (475)
.+...|...|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...++++.+.. +.+..+|..+..+|.+
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence 88888889999999999999888753 3357788888888999999999999999988864 2367888889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 426 KNHSVEAAKLARFMLKKRIW-----------LQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.|++++|.+.++++++.... .+...+..+..++...|+.+.+.++.+
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999988865311 136778889999999999988877654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=3.6e-18 Score=159.56 Aligned_cols=269 Identities=12% Similarity=-0.018 Sum_probs=217.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011905 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 162 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
.+...+..+...+.+.|++++|.+.|+++.... +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668889999999999999999999998765 5578889999999999999999999999998864 34688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCc-H----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 011905 242 DGICRLGSMERALELLGEMEKEGGDCSPN-V----------VTYTSVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTI 309 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~ 309 (475)
..|.+.|++++|.+.++++.+.. |+ . ..+..+...+...|++++|...++++.+.... ++..++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN----PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC----ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 99999999999999999998742 32 2 22334577889999999999999999886422 157889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011905 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389 (475)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 389 (475)
..+...+...|++++|...+++..+.... +..+|..+..+|...|++++|...|+++.+.. +.+..++..+...|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 99999999999999999999999886543 57789999999999999999999999998763 23478889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC---------CCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 390 GQVLEGFCLYEDIEKIGFL---------SSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
|++++|...++++.+.... +..+..+|..+..++...|+.+.+.++.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999875311 011367899999999999999988887654
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=4.6e-15 Score=144.21 Aligned_cols=346 Identities=12% Similarity=-0.029 Sum_probs=280.9
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHh----cCCHHHHHHHHHhcccCCCCCCH
Q 011905 93 SSFMYNRACEMSRI----KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----ARLANEAMWVLRKMPEFDLRPDT 164 (475)
Q Consensus 93 ~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~ 164 (475)
+...+..+...+.. .++.+.|.+.++...+.| +...+..+...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444455555555 788999999999888865 56777788888888 889999999999988854 66
Q ss_pred hhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHH
Q 011905 165 IIYNNVIRLFCE----KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN----AGRLEDACGLFKVMKRHGCAANLVA 236 (475)
Q Consensus 165 ~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~ 236 (475)
..+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 777888888888 789999999999988765 56777778888876 789999999999998875 6778
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011905 237 YSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 237 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..+...|.. .++.++|.+.|++..+. .+...+..+...|.. .+++++|..+|++..+.| +...
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 8888888888 89999999999999884 356677778888876 789999999999988765 4566
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHH
Q 011905 309 ISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT-----KRLKEAEKLFSKMLASGVKPDGLAC 379 (475)
Q Consensus 309 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~ 379 (475)
+..+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|+..|++..+.| +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 7777777777 889999999999998775 455677788888877 89999999999998875 44566
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 380 SVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 380 ~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
..+...|...| +.++|.+.+++..+.+ +...+..+...|.. .+++++|.++|++..+.+ ++..+.
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~ 403 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQV 403 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHH
Confidence 67777777666 7899999999999875 56788888888888 899999999999999876 467788
Q ss_pred HHHHHHHh----cCCHhHHhhccc
Q 011905 453 KIVEHLKK----SGDEELITNLPK 472 (475)
Q Consensus 453 ~l~~~~~~----~g~~~~a~~l~~ 472 (475)
.+...|.. .++.++|.+..+
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHH
Confidence 88888888 889998887654
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=2.5e-15 Score=147.64 Aligned_cols=401 Identities=11% Similarity=0.007 Sum_probs=286.4
Q ss_pred CHHHHHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011905 58 DSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 137 (475)
+...+..++.....++.+.|..+|..+... ++.+...+...+....+.++++.|..+++.+.... |+...|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 344444444433467888999999887653 45678888899999999999999999999998864 68888877775
Q ss_pred H-HHhcCCHHHHHH----HHHhccc-CCCC-CCHhhHHHHHHHHHh---------cCChhHHHHHHHHhccCCCCCChhh
Q 011905 138 L-CEKARLANEAMW----VLRKMPE-FDLR-PDTIIYNNVIRLFCE---------KGDMIAADELMKGMGLIDLYPDIIT 201 (475)
Q Consensus 138 ~-~~~~~~~~~A~~----~~~~m~~-~~~~-~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~ 201 (475)
. ....|+.++|.+ +|+...+ .|.. ++...|...+....+ .|+++.|..+|++.......+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 3 345677766655 7776654 2433 356778877776654 6889999999999987311111234
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCcC--------HHHHHHHHHHHHhc----
Q 011905 202 YVSMIKGF-------------CNAGRLEDACGLFKVMK------RHG---CAAN--------LVAYSALLDGICRL---- 247 (475)
Q Consensus 202 ~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~ll~~~~~~---- 247 (475)
|....... .+.++++.|..+++.+. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43332211 13455677777776532 211 2343 24555555433322
Q ss_pred CCh----HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHH
Q 011905 248 GSM----ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-------KGMMK-------EALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 248 g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~ 309 (475)
++. +.+..+|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...+
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 47788999888742 4567888888888775 79987 899999998863234467888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH-HH
Q 011905 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSS-GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIR-EL 386 (475)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~-~~ 386 (475)
..++..+.+.|++++|..+|+.+++.... + ...|..++..+.+.|++++|.++|++..+. .|+ ...+..... .+
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHH
Confidence 99999999999999999999999985432 2 357888899899999999999999999875 332 222322221 23
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcC
Q 011905 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ----GPYVDKIVEHLKKSG 462 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g 462 (475)
...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.+..+ +.+ ...|...+....+.|
T Consensus 402 ~~~~~~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC-CSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHcCChhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHcC
Confidence 46899999999999998864 2467899999999999999999999999999875 223 337888888889999
Q ss_pred CHhHHhhccc
Q 011905 463 DEELITNLPK 472 (475)
Q Consensus 463 ~~~~a~~l~~ 472 (475)
+.+.+..+.+
T Consensus 478 ~~~~~~~~~~ 487 (530)
T 2ooe_A 478 DLASILKVEK 487 (530)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999887654
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=7.6e-17 Score=147.84 Aligned_cols=276 Identities=10% Similarity=-0.054 Sum_probs=157.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34445555555555555555555554432 2344455555555555555555555555555442 224445555555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhcCCHH
Q 011905 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL-IK-GFCVEGNLD 323 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~-~~~~~~~~~ 323 (475)
..|++++|.+.++++.+.. +.+...+..+... .|+......+ .. .+...|+++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ---PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS---TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC---CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 5555555555555555431 1111111111000 0000000111 11 255666777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (475)
+|...++++.+.... +...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777665432 45667777777777777777777777776542 2345667777777777777888877777777
Q ss_pred HcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL-----------QGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 404 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+.. +.+..+|..+...+.+.|++++|.+.++++++..... +...+..+..++.+.|+.+.|..+.+
T Consensus 234 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 234 DIN---PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HcC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 654 2356677777777777888888888887777654211 46677777778888888887777665
Q ss_pred c
Q 011905 473 I 473 (475)
Q Consensus 473 ~ 473 (475)
.
T Consensus 311 ~ 311 (327)
T 3cv0_A 311 Q 311 (327)
T ss_dssp C
T ss_pred H
Confidence 3
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=5.1e-17 Score=148.98 Aligned_cols=283 Identities=11% Similarity=-0.052 Sum_probs=186.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 207 (475)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|.+.++++.... +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45566777889999999999999999998754 3578889999999999999999999999998764 557788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH--HHHhcC
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ--IFCGKG 285 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g 285 (475)
.+...|++++|.+.++.+.+.... +...+..+... .|+......+.. .+...|
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------------CCTTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHcc
Confidence 999999999999999999886422 22223222100 011111111111 134445
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (475)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|.+.++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555442 224455555556666666666666666665554322 34556667777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------CCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS---------SVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
++.+.. +.+...+..+...+...|++++|.+.++++.+..... ..+..+|..+..++.+.|++++|.+++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 766542 2345666677777777777777777777776653110 004567778888888888888888877
Q ss_pred HHHH
Q 011905 437 RFML 440 (475)
Q Consensus 437 ~~m~ 440 (475)
++.+
T Consensus 310 ~~~l 313 (327)
T 3cv0_A 310 AQNV 313 (327)
T ss_dssp TCCS
T ss_pred HHHH
Confidence 6543
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=2.3e-16 Score=141.87 Aligned_cols=252 Identities=10% Similarity=-0.004 Sum_probs=122.7
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.....|+++.|+..++................+.++|...|+++.|+..++.. -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 33445666666666655543221111223344555666666666665544331 13445555555555666666666
Q ss_pred HHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 218 ACGLFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 218 a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
|++.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666655544322 344444455556666666666665554 13445555555556666666666666665
Q ss_pred HHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011905 297 MEALGCAPNRVTI---STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 297 m~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 373 (475)
+.+.. |+.... ...+..+...|++++|..+|+++.+... .+...++.+..++.+.|++++|...+++..+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 55542 332111 1111222233455555555555554421 244445555555555555555555555544432 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 011905 374 PDGLACSVMIRELCLGGQVLE-GFCLYEDIEKI 405 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 405 (475)
-+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 233444444444444554433 34455554443
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=7.4e-16 Score=138.55 Aligned_cols=252 Identities=11% Similarity=0.024 Sum_probs=139.4
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011905 173 LFCEKGDMIAADELMKGMGLIDLYPD--IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
-....|+++.|+..++...... |+ ......+.++|...|+++.|+..++. .-+|+..++..+...+...|+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3444566666666666554322 22 22334455666666666666654433 1244555666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011905 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 330 (475)
++|++.++++...+. .+.+...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++
T Consensus 82 ~~A~~~l~~ll~~~~-~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSRSV-DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHSCC-CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666654210 122344455555666666666666666655 3455566666666666666666666666
Q ss_pred HHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 331 KVVAGGSVSSGGCY---SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 331 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
.+.+.+ |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 666543 221111 112222333466666666666666542 3345556666666666666666666666666553
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 011905 408 LSSVDSDIHSVLLLGLCRKNHSVE-AAKLARFMLKKR 443 (475)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~ 443 (475)
+.+..++..++..+...|+.++ +.++++++++..
T Consensus 231 --p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 --SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp --TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 2355566666666666666654 455666666554
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.8e-17 Score=151.31 Aligned_cols=286 Identities=9% Similarity=-0.034 Sum_probs=123.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 184 (475)
...++.+.|.+.++.+ +++.+|..+..++.+.|++++|++.|.+. +|...|..++.++...|++++|.
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3456788888888776 23358888888888888888888888653 56678888888888888888888
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 011905 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264 (475)
Q Consensus 185 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (475)
++++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 877766653 4557778888888888888888887774 367778888888898899999998888865
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 011905 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344 (475)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 344 (475)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhH
Confidence 25888888889999999988888877 2678888888889988988888554443 22233445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----CchhhHHHH
Q 011905 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-----VDSDIHSVL 419 (475)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~l 419 (475)
..++..|.+.|++++|..+++...... +-....|+-|--+|++- ++++..+.++.....-..|+ .+...|..+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 568888888899999988888887543 34456666666566554 44444444443333322232 256778888
Q ss_pred HHHHHhcCCHHHHHHH
Q 011905 420 LLGLCRKNHSVEAAKL 435 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~ 435 (475)
+..|...++++.|...
T Consensus 289 ~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 289 VFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHhhchHHHHHHH
Confidence 8888888888888764
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=9.4e-19 Score=173.64 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=108.2
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011905 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEG-GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
.-..||+++|++||+.|++++|.++|++|.+.+ .++.||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345678888888888888888888887776421 2457888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 011905 311 TLIKGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD------GLACSVMI 383 (475)
Q Consensus 311 ~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li 383 (475)
++|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..+..|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 88888888876 467788888888888888888888877655443 333344433 2334443 33444455
Q ss_pred HHHHhcC
Q 011905 384 RELCLGG 390 (475)
Q Consensus 384 ~~~~~~g 390 (475)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=172.25 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=85.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhcc---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGL---IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 239 (475)
-..+||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 445777777777777777777777766543 46677777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011905 240 LLDGICRLGSM-ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 240 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
+|.++++.|+. ++|.++|++|.+. |+.||..+|+.++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k--G~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE--GLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH--TCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc--CCCCChhhcccccChhhH
Confidence 77777777763 5677777777774 457777777777655444
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2.4e-14 Score=140.60 Aligned_cols=370 Identities=11% Similarity=0.001 Sum_probs=269.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 171 (475)
.+...|..++.. ...++++.|..+++.+.+.. |-+...|...+..+.+.|++++|..+|+++.... |+...|...+
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 466777777874 66899999999999998864 6688899999999999999999999999998864 6888888777
Q ss_pred HHH-HhcCChhHHHH----HHHHhcc-CCCC-CChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCcCHH
Q 011905 172 RLF-CEKGDMIAADE----LMKGMGL-IDLY-PDIITYVSMIKGFCN---------AGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 172 ~~~-~~~g~~~~a~~----~~~~m~~-~~~~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
... ...|+.+.|.+ +|+.... .|.. ++...|...+....+ .|+++.|..+|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 35677777665 6666543 2433 356677777776654 688999999999998842111123
Q ss_pred HHHHHHHHH-------------HhcCChHHHHHHHHHHH------hcCC-CCCCc--------HHHHHHHHHHHHhc---
Q 011905 236 AYSALLDGI-------------CRLGSMERALELLGEME------KEGG-DCSPN--------VVTYTSVIQIFCGK--- 284 (475)
Q Consensus 236 ~~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~~~-~~~~~--------~~~~~~li~~~~~~--- 284 (475)
.|....... .+.+++..|..++.++. +... .++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 443322211 13456777877776632 2111 12343 24566555443322
Q ss_pred -CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCChhhHH
Q 011905 285 -GMM----KEALGILDRMEALGCAPNRVTISTLIKGFCV-------EGNLD-------EAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 285 -g~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
++. +++..+|++..... +-+...|......+.+ .|+++ +|..++++.++.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 47788898888752 4467788888887775 69987 8999999998632233578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH-
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPD-G-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG- 422 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~- 422 (475)
.++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|+++|++..+.. +.+...|......
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~---~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TCCTHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---CCchHHHHHHHHHH
Confidence 9999999999999999999999975 554 2 578888888889999999999999999853 2233444333222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+...|++++|.++|++.++.. +.++..+..++..+.+.|+.+.|..+++
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 346899999999999999876 6678999999999999999999988765
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=2.6e-17 Score=151.51 Aligned_cols=282 Identities=13% Similarity=0.090 Sum_probs=136.3
Q ss_pred hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 141 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 220 (475)
+.|++++|.++++++.. ..+|..|+.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 56778999999999832 35999999999999999999999965 3677899999999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 88777664 4567889999999999999999988773 267779999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011905 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380 (475)
Q Consensus 301 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 380 (475)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 36999999999999999999999998 26788999999999999999996655542 23444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------ChhhHH
Q 011905 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK--NHSVEAAKLARFMLKKRIWL------QGPYVD 452 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~ 452 (475)
.++..|.+.|++++|..+++...... +-....|+-+...|++- ++..+.+++|.. ..++++ +...|.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le---~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 78899999999999999999998754 23678899888888764 345555554432 223333 567889
Q ss_pred HHHHHHHhcCCHhHHhhc
Q 011905 453 KIVEHLKKSGDEELITNL 470 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l 470 (475)
.+.-.|.+.++++.|...
T Consensus 287 e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHH
Confidence 999999999999987654
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=9.5e-14 Score=142.54 Aligned_cols=344 Identities=14% Similarity=0.081 Sum_probs=225.9
Q ss_pred CCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHH
Q 011905 57 LDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSS-YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV 134 (475)
Q Consensus 57 ~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (475)
.+|+.+....+.. ..+.+..++..+......+. |..+...-+.++....+. +.....+.++..... ...-
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHH
Confidence 3444444444443 45555555555554443322 222333333333333222 333333433333210 1122
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 011905 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 214 (475)
+...+...|++++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 45566777888888888887531 2222233332 567788888887755 246778888888888888
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++|...|.+. -|...|..++.+|.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 88888888553 367788888888888899999988888777632 33333445888888888877544332
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011905 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (475)
+ .++...|..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 345566777888888889999999988885 24888889999999999999888876 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011905 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+..+|..+-.+|...|++..|......+.. +...+..++..|.+.|.+++|+++++..+... +-....|..+
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Iiv-------~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-------HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 557888888888888888888776554322 45667788889999999999999998887655 5555566666
Q ss_pred HHHHHhcC
Q 011905 455 VEHLKKSG 462 (475)
Q Consensus 455 ~~~~~~~g 462 (475)
..++.+..
T Consensus 1321 aiLyaKy~ 1328 (1630)
T 1xi4_A 1321 AILYSKFK 1328 (1630)
T ss_pred HHHHHhCC
Confidence 66555543
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=6.1e-14 Score=135.60 Aligned_cols=361 Identities=10% Similarity=-0.035 Sum_probs=237.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccC----
Q 011905 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE--------GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF---- 158 (475)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---- 158 (475)
.+....|+.+..+....|+.++|++.++...+. ..+....+|+.+...|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567888888999999999999998876431 12334678888999999999999999998876541
Q ss_pred -C--CCCCHhhHHHHHHHHHhc--CChhHHHHHHHHhccCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCC
Q 011905 159 -D--LRPDTIIYNNVIRLFCEK--GDMIAADELMKGMGLIDLYPDIITYVSMIKG---FCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 159 -~--~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
+ ......++..+..++.+. +++++|.+.|++..+.. +-+...+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 112345666666666554 57899999999988654 3344555555444 345677788999998888764
Q ss_pred CcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011905 231 AANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
+.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|+..+++..+.. +-+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 3356666666655554 467889999999988753 4567788899999999999999999999988763 2345
Q ss_pred HHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 307 VTISTLIKGFCVE-------------------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 307 ~~~~~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
..+..+..+|... +..+.|...++...+.+.. +..++..+...|...|++++|++.|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 5666655554322 2356777788877765433 4566888999999999999999999999
Q ss_pred HHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 368 LASGVKPDGL--ACSVMIR-ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 368 ~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
.+....+... .+..+.. .....|+.++|+..+++..+... +.... .+....+.+++++.+...
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~----~~~~~---------~~~~~~l~~~~~~~l~~~- 426 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ----KSREK---------EKMKDKLQKIAKMRLSKN- 426 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC----CCHHH---------HHHHHHHHHHHHHHHHHC-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc----ccHHH---------HHHHHHHHHHHHHHHHhC-
Confidence 8764333221 1222222 23567899999999998887532 11111 111233344455555544
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 445 WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
|.++.++..+..++...|++++|.+..+
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555666666666666666666665544
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=1.6e-12 Score=133.65 Aligned_cols=310 Identities=9% Similarity=-0.039 Sum_probs=168.2
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 011905 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 185 (475)
..+++++|.++.+.. -+..+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 334455555544432 23455555555555555555555555443 244455555555555555555555
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 011905 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265 (475)
Q Consensus 186 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (475)
++...++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|....
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---- 1222 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---- 1222 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh----
Confidence 555544332 22222223555555555555322221 1 2344444455555555666666666555431
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 011905 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
.|..+...|++.|++++|.+.+++. .+..+|..+-.+|...|++..|...... +..+...+.
T Consensus 1223 -------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLe 1284 (1630)
T 1xi4_A 1223 -------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELE 1284 (1630)
T ss_pred -------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHH
Confidence 3555555666666666666555544 1345555555555555555555554432 222445577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----CchhhHHHHH
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-----VDSDIHSVLL 420 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~li 420 (475)
.++..|.+.|.+++|+.+++..+... +-....|+-|...+++. ++++..+.++...+....|+ .+...|..++
T Consensus 1285 eli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv 1362 (1630)
T 1xi4_A 1285 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHH
Confidence 78888888888888888887776432 22334555555555543 33433333333334433332 2567788888
Q ss_pred HHHHhcCCHHHHHHH-------------HHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011905 421 LGLCRKNHSVEAAKL-------------ARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~-------------~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
..|.+.|+++.|... |.+.+. -..++..|...+.-|...+
T Consensus 1363 ~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1363 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 889999999988732 222111 1456677777777776666
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-14 Score=128.53 Aligned_cols=228 Identities=9% Similarity=-0.004 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYT 275 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 275 (475)
..+..+...+...|++++|...|++..+.. .+..++..+..+|...|++++|.+.+++..+......++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555666666666666666665554 455566666666666666666666666655421100011 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011905 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
.+...+...|++++|...+++..+.. |+. ..+.+.|++++|...++.+...... +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 66666666666666666666666542 332 2345556677777777777665322 3456777777777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011905 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|.+.
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888887777643 2356677777777788888888888888877764 23567777788888888888888888
Q ss_pred HHHHHHcC
Q 011905 436 ARFMLKKR 443 (475)
Q Consensus 436 ~~~m~~~~ 443 (475)
++++++..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88777653
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.7e-14 Score=125.05 Aligned_cols=118 Identities=8% Similarity=-0.022 Sum_probs=52.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (475)
.|++++|...++.+.... +.+...+..+...+...|++++|...+++..+.... +..++..+...|...|++++|...
T Consensus 118 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344444444444444321 112233444444444444444444444444443221 234444444455555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+++..+.. +.+...+..+...+...|++++|...+++..+
T Consensus 196 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55444432 12234444444455555555555555554443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=2.6e-14 Score=122.69 Aligned_cols=197 Identities=16% Similarity=0.063 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011905 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 312 (475)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 33344444444444555555555554444421 2334444444444444555555555554444432 1133344444
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011905 313 IKGFCVE-----------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 313 i~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 381 (475)
..++... |++++|...+++.++..+. +...+..+...|...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 4444444 6666666666666554432 34555666666666666666666666666554 45556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
+..++...|++++|...++++.+.. +.+...+..+...+.+.|++++|++.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666666643 234556666666666666666666666554
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.4e-14 Score=122.95 Aligned_cols=196 Identities=17% Similarity=0.066 Sum_probs=89.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44444555555555555555555555554432 3334445555555555555555555555554442 123444445555
Q ss_pred HHHhc-----------CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011905 243 GICRL-----------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 243 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
.+.+. |++++|+..+++..+.. |.+...|..+..++...|++++|+..|++..+.. .+...+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 55554 55555555555555432 2234444455555555555555555555554443 34444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (475)
+..++...|++++|...|+...+..+. +...+..+...+...|++++|+..+++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555555555443321 334444444555555555555554444
No 40
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=4.2e-13 Score=129.68 Aligned_cols=353 Identities=11% Similarity=-0.060 Sum_probs=237.6
Q ss_pred CCCChHHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C---CccCHHhHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQ-------SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE----G---CVVSVKMMKVI 135 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~l 135 (475)
..++.+.|+..|..+... ..-+....+|..+..++...|+++.|...++...+. . ......++...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 378889998887665321 122335668888999999999999999988876542 1 11234566655
Q ss_pred HHHHHhc--CCHHHHHHHHHhcccCCCCCCHhhHHHHHHH---HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011905 136 FNLCEKA--RLANEAMWVLRKMPEFDLRPDTIIYNNVIRL---FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 136 i~~~~~~--~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+..++..+...+.
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLH 220 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHH
Confidence 5555543 57999999999988754 2345555555554 345678889999998887654 445566666655554
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc--
Q 011905 211 N----AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK-- 284 (475)
Q Consensus 211 ~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 284 (475)
. .++.++|.+.+++..... +.+..++..+...|.+.|++++|.+.+++..+.. +.+..++..+...|...
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHH
Confidence 4 467789999999888765 4477889999999999999999999999998853 34566676666655432
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHH
Q 011905 285 -----------------GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG--CYS 345 (475)
Q Consensus 285 -----------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 345 (475)
+..++|...++...+.. +.+...+..+...+...|++++|...|++.++....+... .+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~ 375 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 23567788888777653 3355678888999999999999999999999876544321 233
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 346 SLVV-ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 346 ~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
.+.. .+...|+.++|+..|.+..+. .|+...... ..+.+.++++...+.+ +.+..+|..+...|.
T Consensus 376 ~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~---p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 376 RYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN---GADSEALHVLAFLQE 441 (472)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC---C-CTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 3332 245779999999999999865 455332222 2234455666666654 347789999999999
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 011905 425 RKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~~ 443 (475)
..|++++|++.|++.++.+
T Consensus 442 ~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHCC-------------
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999876
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1.5e-13 Score=122.33 Aligned_cols=254 Identities=11% Similarity=0.026 Sum_probs=153.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (475)
.+......+...|++++|+..|++..+... .+...+..+...|...|++++|.+.++++.+...........|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344455556666666666666666665432 2334566666666666666666666666665221111113335666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
+...|++++|++.+++..+.. +.+...+..+...|...|++++|...+++..+.... +...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777776666543 224456667777777777777777777776665322 345555555233344578888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CCC----chhhHHHHHHHHHhcCCHHHH
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFL-SSV----DSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A 432 (475)
.+.|+++.+.. +.+...+..+...+...|+ .++|...++++.+.... |.+ -..+|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88887777642 2235566666666666676 77777777777764211 111 125677788888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 433 AKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
.+.++++++.. |.++.....+.....
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHC----
T ss_pred HHHHHHHHhcC-ccHHHHHHHhhhhhc
Confidence 88888888876 556655555544443
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=1.1e-12 Score=116.81 Aligned_cols=222 Identities=11% Similarity=-0.023 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYT 275 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 275 (475)
.++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHHH
Confidence 344444444555555555555555544421 33444445555555 555555555555555421 344444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011905 276 SVIQIFCG----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347 (475)
Q Consensus 276 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 347 (475)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 555555555555555443 34445555555555 555555555555555544 23444555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 348 VVELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 348 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l 224 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-----NGGGCFNL 224 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----CHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-----CHHHHHHH
Confidence 555555 566666666666655543 33445555555555 666666666666666543 23455556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcC
Q 011905 420 LLGLCR----KNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 i~~~~~----~g~~~~A~~~~~~m~~~~ 443 (475)
...|.. .+++++|.+.+++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666665 666666666666666655
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=4.9e-13 Score=117.52 Aligned_cols=202 Identities=14% Similarity=0.034 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 3455556666666666666666666666532 3345566666666666666666666666665543 22455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 392 (475)
..+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.. ..+...+..+...+...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 66667777777777777666522223 34556666677777777777777777766543 22456666677777777777
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++|...++++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 192 ~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 192 VPARQYYDLFAQGG---GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777777776643 2355666777777777777777777777777664
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=4.6e-13 Score=115.26 Aligned_cols=200 Identities=10% Similarity=-0.038 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444444444555555555544444322 2233444444444444455555555444444432 12344444444445
Q ss_pred Hhc-CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 245 CRL-GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 245 ~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 323 (475)
... |++++|.+.++++.+. ...+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 555 5555555555544441 0111223344444444444445555544444444332 112333444444444444444
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
+|...++.+.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444444444433221123333333444444444444444444443
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=7.7e-13 Score=116.28 Aligned_cols=202 Identities=10% Similarity=-0.033 Sum_probs=116.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
...|..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455566666666666666666666665433 3345556666666666666666666666665543 2245566666666
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 323 (475)
|...|++++|.+.++++.+. ...+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666551 0112344555556666666666666666666655542 223455555555666666666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
+|...++.+.+... .+...+..+...+...|+.++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666555432 23444555555555666666666666655543
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=1.1e-13 Score=120.93 Aligned_cols=211 Identities=14% Similarity=0.120 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp -------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3445555555666666666666666665532 3345556666666666666666666666665542 22455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
..+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. ..+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666654422 44556666777777777777777777766542 234566666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011905 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+|...++++.+.. +.+..++..+...|...|++++|.+.++++++.. +.+...+..+
T Consensus 177 ~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 177 EALSQFAAVTEQD---PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 7777777777654 2356677777777777788888888887777765 4444444433
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=2.3e-12 Score=114.80 Aligned_cols=219 Identities=13% Similarity=0.002 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011905 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..++..+...|...|++++|.+.|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 5677888899999999999999999999883 356778888999999 999999999999999876 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011905 309 ISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR----TKRLKEAEKLFSKMLASGVKPDGLACS 380 (475)
Q Consensus 309 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 380 (475)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8889999999 999999999999999876 66788899999999 999999999999999875 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 381 VMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 381 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|++.+++..+.+. ...+.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 222 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF 222 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence 77778887 899999999999999875 45778889999999 9999999999999998862 67788
Q ss_pred HHHHHHHh----cCCHhHHhhcccc
Q 011905 453 KIVEHLKK----SGDEELITNLPKI 473 (475)
Q Consensus 453 ~l~~~~~~----~g~~~~a~~l~~~ 473 (475)
.+...|.+ .|+.++|.+.++.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHH
Confidence 88999998 9999999877653
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=3e-13 Score=120.36 Aligned_cols=193 Identities=11% Similarity=0.009 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh----hHHHHHH
Q 011905 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII----TYVSMIK 207 (475)
Q Consensus 132 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~ 207 (475)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..... ++.. .|..+..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHH
Confidence 3334445555555555555555555432 1233355555555555555555555555554421 1211 2444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
.+...|++++|...|+...+... .+..++..+...|...|++++|.+.+++..+.. +.+...|..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544321 133445555555555555555555555544421 22333344333122222345
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHH
Q 011905 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGN---LDEAYQLIDKV 332 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~ 332 (475)
++|.+.|++..+.. +.+...+..+..++...|+ +++|...+++.
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 55555554444432 1123333334444444443 34444444443
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=8.2e-14 Score=124.17 Aligned_cols=218 Identities=9% Similarity=-0.118 Sum_probs=100.7
Q ss_pred cCChhHHHHHHHHhccCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011905 177 KGDMIAADELMKGMGLIDL---YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
.|++++|++.|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4555555555555554321 1123445555555555555555555555555543 22455555555555555555555
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 333 (475)
.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. |+.......+..+...|++++|...++...
T Consensus 97 ~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELD---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55555555532 2234455555555555555555555555555432 222222223333344455555555554444
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
..... +...+ .++..+...++.++|.+.+.+..+. .|+ ...+..+...+...|++++|...++++.+
T Consensus 172 ~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 172 EKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33211 11112 2334444444445555555444322 111 23333444444444444444444444444
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=1.4e-12 Score=112.12 Aligned_cols=203 Identities=11% Similarity=-0.009 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 3445555555555555555555555555432 2334455555555555566666666555555432 22444555555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011905 314 KGFCVE-GNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391 (475)
Q Consensus 314 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 391 (475)
..+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 566666 66666666666665522222 23455566666666666666666666665542 1235556666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+++|...++++.+... ..+...+..+...+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVE--VLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 6666666666665431 0244555566666666667776666666665543
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=5.3e-14 Score=125.44 Aligned_cols=223 Identities=11% Similarity=-0.077 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..+..+...+...|++++|.+.|+++.... +.+..+|..+...+...|++++|...|++..+.. +.+..++..+...|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence 344444444444444444444444444332 2234444444444444555555555554444432 11344444455555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 324 (475)
.+.|++++|.+.++++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQT 195 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHH
T ss_pred HHhccHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHH
Confidence 55555555555555554421 222222222333334455555555554444331 1222222 23444444455555
Q ss_pred HHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 325 AYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399 (475)
Q Consensus 325 a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 399 (475)
|...++......... +...+..+...|...|++++|...|++..+. .|+. +.....++...|++++|.+.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 555555544322110 1344555555666666666666666665543 2321 111233344555555555443
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=4.2e-13 Score=124.71 Aligned_cols=197 Identities=9% Similarity=0.023 Sum_probs=115.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR-LEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
...|+.+..++.+.|++++|++.++++.... +-+...|+.+..++...|+ +++|+..|++..+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4456666666667777777777777766543 3345666666666666675 77777777766665422 5666666666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCC
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV-EGN 321 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~ 321 (475)
++.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..++++.+... -+...|+.+..++.. .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 6667777777777777666643 34556666666666666666666666666665532 245555555555555 344
Q ss_pred HHHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHH
Q 011905 322 LDEA-----YQLIDKVVAGGSVSSGGCYSSLVVELVRTK--RLKEAEKLFSKM 367 (475)
Q Consensus 322 ~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m 367 (475)
.++| +..+++.++.... +...|+.+...+...| ++++|++.+.++
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 3444 2445444443322 3344444444444444 344555554444
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=6.4e-13 Score=123.49 Aligned_cols=233 Identities=11% Similarity=-0.001 Sum_probs=169.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD-MIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
+...|..+...+.+.|++++|+..|++..+.. +-+...|+.+..++...|+ +++|++.|+++.... +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34566677777888888888888888887754 3466778888888888886 888888888887754 44677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-cC
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-KG 285 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g 285 (475)
.++...|++++|+..|+++++... -+...|..+..++.+.|++++|+..++++.+.. +.+...|+.+..++.. .|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcC
Confidence 888888888888888888887653 367788888888888888888888888888753 4567778888888887 56
Q ss_pred CHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---
Q 011905 286 MMKEA-----LGILDRMEALGCAPNRVTISTLIKGFCVEG--NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK--- 355 (475)
Q Consensus 286 ~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 355 (475)
..++| ++.+++..... +-+...|..+...+...| ++++|.+.+.++ +.+ ..+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 55666 47777776653 235567777777777777 578888888777 322 234566777777777653
Q ss_pred ------CHHHHHHHHHHH-HH
Q 011905 356 ------RLKEAEKLFSKM-LA 369 (475)
Q Consensus 356 ------~~~~A~~~~~~m-~~ 369 (475)
..++|+++|+++ .+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 246777777777 43
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=2.7e-13 Score=118.38 Aligned_cols=197 Identities=15% Similarity=0.115 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 33334444444555555555555544422 2234444444455555555555555555444332 223444444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCCHHHH
Confidence 4555555555554444432 1234444444444445555555555554444421 22334444444444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 291 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
...++++.+.. +.+..++..+..++...|++++|...++++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 44444444331 12233444444444444444444444444443
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=6.2e-13 Score=126.04 Aligned_cols=209 Identities=13% Similarity=0.055 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTSVIQIFCGKGM-----------------MKEALGIL 294 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~ 294 (475)
.++..+...|...|++++|.+.+++..+.. ...+....++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344444555555555555555555443310 0001123344555555555555 55555555
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 295 DRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-S----SGGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 295 ~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~ 364 (475)
++..+. +..+ ....+..+...+...|++++|...+++..+.... . ...++..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 544321 1111 2235666667777777777777777776543111 0 1236777888888888998888888
Q ss_pred HHHHHCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 365 SKMLASGV--K---PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 365 ~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
++..+... . ....++..+...+...|++++|...+++..+.... +.....++..+...|...|++++|.+++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 87764310 0 11456777788888999999999999887764110 1112457888899999999999999999
Q ss_pred HHHHHcC
Q 011905 437 RFMLKKR 443 (475)
Q Consensus 437 ~~m~~~~ 443 (475)
++.++..
T Consensus 367 ~~al~~~ 373 (411)
T 4a1s_A 367 EQHLQLA 373 (411)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9988664
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=3.2e-13 Score=127.60 Aligned_cols=299 Identities=12% Similarity=0.035 Sum_probs=166.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHH
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCA-ANLV 235 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~ 235 (475)
..+......+...|++++|...|++....+ +.+ ...+..+...+...|++++|...+++..+. +-. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444445555555555555555554432 111 133444555555555555555555543321 111 1133
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CCCcHHHHHHHHHHHHhcCC--------------------HHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGD---CSPNVVTYTSVIQIFCGKGM--------------------MKEALG 292 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~--------------------~~~a~~ 292 (475)
++..+...|...|++++|...+++..+.... ......++..+...|...|+ +++|.+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4555555666666666666666555442100 00012345555666666666 666666
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHH
Q 011905 293 ILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-S----SGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 293 ~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~ 362 (475)
.+++.... +..| ...++..+...+...|++++|...+++..+.... + ...++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66554321 1111 1235666667777777777777777776542110 1 12357777777888888888888
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHH
Q 011905 363 LFSKMLAS----GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 363 ~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
.+++..+. +-.+. ..++..+...+...|++++|...+++..+.... +.....++..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776642 11111 345667777788888888888888877653110 01125567778888888888888888
Q ss_pred HHHHHHHc----CC-CCChhhHHHHHHHHHhcCCH
Q 011905 435 LARFMLKK----RI-WLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 435 ~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~ 464 (475)
.+++.++. +. +....++..+...+...|+.
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 88887654 11 12234566677777777765
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=1.2e-12 Score=125.46 Aligned_cols=335 Identities=12% Similarity=0.034 Sum_probs=211.1
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC----
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP---SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR---- 143 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---- 143 (475)
.++.+.|.+.|.-.... +. ...+..+...+...|+. ++|.+.++...+. +...+..+...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~~-g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAEL-GY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHH-TC---CTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred CCCHHHHHHHHHHHHHC-CC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence 56777788877776544 22 22233344444445555 7888887776643 5556666666444444
Q ss_pred -CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh---HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH--
Q 011905 144 -LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI---AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED-- 217 (475)
Q Consensus 144 -~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-- 217 (475)
++++|+..|++..+.|. ...+..|...|...+..+ .+.+.+......| +...+..+...|...+.+++
T Consensus 88 ~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 67788888888877553 236666777777665433 3444444444333 34556667777777775444
Q ss_pred --HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc----CCHH
Q 011905 218 --ACGLFKVMKRHGCAANLVAYSALLDGICRLG---SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK----GMMK 288 (475)
Q Consensus 218 --a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~ 288 (475)
+..+++..... ++..+..+...|.+.| +.++|++.|++..+.+ +++...+..+...|... ++++
T Consensus 162 ~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 162 DDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp HHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred HHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 44444433322 3337788888888888 8999999999998865 46666656677777554 6899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHH
Q 011905 289 EALGILDRMEALGCAPNRVTISTLIKG-F--CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-----RLKEA 360 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A 360 (475)
+|++.|++.. .| +...+..+... + ...+++++|.+.|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999998887 43 44556666655 3 46789999999999998877 5566777777776 55 89999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHH
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEA 432 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 432 (475)
++.|++.. . -+...+..|-..|.. ..+.++|...|++..+.| +......+...|.. ..+.++|
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-----QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-----CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 99998876 3 355666666666655 338999999999998876 34556677777764 4589999
Q ss_pred HHHHHHHHHcC
Q 011905 433 AKLARFMLKKR 443 (475)
Q Consensus 433 ~~~~~~m~~~~ 443 (475)
..+++...+.|
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 99999999888
No 58
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=6.7e-13 Score=127.11 Aligned_cols=188 Identities=14% Similarity=0.103 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCCCcHHH
Q 011905 201 TYVSMIKGFCNAG---RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL----GSMERALELLGEMEKEGGDCSPNVVT 273 (475)
Q Consensus 201 ~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (475)
.+..+...|...| +.++|++.|+...+.| .++...+..+...|... +++++|.+.|++.. .+ +...
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-----~~~a 250 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-----YPAS 250 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-----STHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-----CHHH
Confidence 4444555555555 5555555555555544 22333334444444433 45555555555544 21 2333
Q ss_pred HHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCChhhHH
Q 011905 274 YTSVIQI-F--CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG-----NLDEAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 274 ~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
+..+... + ...+++++|++.|++..+.| +...+..|-..|. .| ++++|...|+... .| +...+.
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~ 322 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADY 322 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHH
Confidence 3333333 2 23455555555555555444 3334444444443 33 5555555555544 22 233344
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 011905 346 SLVVELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 346 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 406 (475)
.|...|.. ..++++|.+.|++..+.|. | .....|-..|.. ..+.++|...++...+.|
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 44444433 2255555555555554432 1 222233333322 234555555555555544
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=8.6e-13 Score=120.95 Aligned_cols=272 Identities=13% Similarity=0.086 Sum_probs=153.9
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHH
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCA-ANLVAYSALL 241 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll 241 (475)
...+...|++++|...|+++.... +.+ ...+..+...+...|++++|...+++..+. +-. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 334444455555555554444322 111 133444444455555555555554443321 101 1133455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC---CCcHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 011905 242 DGICRLGSMERALELLGEMEKEGGDC---SPNVVTYTSVIQIFCGKGM--------------------MKEALGILDRME 298 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~ 298 (475)
..|...|++++|.+.+++..+..... .....++..+...+...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 56666666666666665544311000 0012245555566666666 666666665543
Q ss_pred Hc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 299 AL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----VSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 299 ~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
.. +..+ ....+..+...+...|++++|...+++..+... .....++..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 1111 133566666777777888888887777654211 1112367777888888888888888888776
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 369 ASGV-KPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 369 ~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
+... ..+ ..++..+...+...|++++|...+++..+.... +.....++..+...|.+.|++++|.+.+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4210 111 456667777888889999999888887654110 11124567788888889999999999999888
Q ss_pred HcC
Q 011905 441 KKR 443 (475)
Q Consensus 441 ~~~ 443 (475)
+..
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 653
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=6.8e-13 Score=125.72 Aligned_cols=271 Identities=15% Similarity=0.077 Sum_probs=200.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL----VAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVT 273 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~ 273 (475)
.+..+...+...|++++|...|+++.+.+.. +. ..+..+...|...|++++|.+.+++..+.. ...+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556677788888888888887776322 32 467778888888888888888888776520 001234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 011905 274 YTSVIQIFCGKGMMKEALGILDRMEAL----GC-APNRVTISTLIKGFCVEGN-----------------LDEAYQLIDK 331 (475)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~ 331 (475)
+..+...|...|++++|...+++..+. +- .....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888899999999999999999887643 11 1234577888889999999 9999999888
Q ss_pred HHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 332 VVAG----GS-VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEGFCLYED 401 (475)
Q Consensus 332 ~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (475)
..+. +. .....++..+...|...|++++|.+.+++..+... .++ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7542 11 11235788889999999999999999998875311 112 23677888899999999999999998
Q ss_pred HHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 402 IEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-----WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 402 ~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+.... +.....++..+...+...|++++|.+++++.+.... ......+..+...+...|++++|.+.++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8764211 001256788899999999999999999999886521 1223477889999999999999988765
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=7.9e-13 Score=124.88 Aligned_cols=301 Identities=14% Similarity=0.005 Sum_probs=198.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHhccC----CCC-CC
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD----TIIYNNVIRLFCEKGDMIAADELMKGMGLI----DLY-PD 198 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~~ 198 (475)
....+......+...|++++|...|++..+.+. .+ ...+..+...+...|++++|...+++.... +-. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344455555667777777777777777766431 12 245667777777777777777777765332 111 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHHHHHHHHHHHhcCC--------------------hHHH
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGC-----AANLVAYSALLDGICRLGS--------------------MERA 253 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~~~~~~~~~ll~~~~~~g~--------------------~~~a 253 (475)
..++..+...+...|++++|...+++..+... .....++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44566677777778888888877776654310 0113467777778888888 8888
Q ss_pred HHHHHHHHhcC--C-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 011905 254 LELLGEMEKEG--G-DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-APN----RVTISTLIKGFCVEGNLDEA 325 (475)
Q Consensus 254 ~~~~~~~~~~~--~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a 325 (475)
.+.+++..... . ..+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88887765420 0 0112244677778888888999999888887764310 111 23677788888899999999
Q ss_pred HHHHHHHHhCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 011905 326 YQLIDKVVAGG----SVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 326 ~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a 395 (475)
...+++..+.. ..+ ...++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99988876431 111 145678888889999999999999988765311 111 45677788888899999999
Q ss_pred HHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHH
Q 011905 396 FCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 396 ~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~ 430 (475)
...+++..+. +.. .....++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDK-SGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhhHhH
Confidence 9999987754 211 123556777777777776653
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=1.7e-11 Score=114.93 Aligned_cols=299 Identities=8% Similarity=-0.014 Sum_probs=199.1
Q ss_pred HHHhcCCHHHHHHHHHhcccC--CC--CCCHhhHHHHHHHH--HhcCChhHHH-----------HHHHHhccCCCCCChh
Q 011905 138 LCEKARLANEAMWVLRKMPEF--DL--RPDTIIYNNVIRLF--CEKGDMIAAD-----------ELMKGMGLIDLYPDII 200 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~--~~--~~~~~~~~~ll~~~--~~~g~~~~a~-----------~~~~~m~~~~~~~~~~ 200 (475)
.+.+.+++++|..+++++.+. .+ .++...|-.++..- .-.++.+.+. +.++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 355677788888877776542 22 22333334343321 1123333333 5555553311 1111
Q ss_pred h------HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--
Q 011905 201 T------YVSMIKGFCNAGRLEDACGLFKVMKRH----GCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDC-- 267 (475)
Q Consensus 201 ~------~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-- 267 (475)
. +......+...|++++|...+++..+. +-.+ ...++..+...|...|++++|.+.+.+..+.....
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 122455677889999999999988763 1111 34678888899999999999999998876531111
Q ss_pred --CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----C
Q 011905 268 --SPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA-----G 335 (475)
Q Consensus 268 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~ 335 (475)
+....+++.+...|...|++++|++.+++..+. +..+ ...++..+..+|...|++++|...+++..+ .
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 112456788888999999999999999887643 1111 124678888899999999999999998876 3
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC
Q 011905 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~ 408 (475)
.......++..+...|...|++++|...+++..+. +-......+..+...+...|+ +++|..++++. +..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~ 335 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY 335 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH
Confidence 31334667888999999999999999999987753 111112335666677788888 66777766665 322
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 409 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
| .....+..+...|...|++++|.+.+++..+.
T Consensus 336 ~-~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 336 A-DLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 24567888999999999999999999998764
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=7.3e-13 Score=120.18 Aligned_cols=205 Identities=14% Similarity=0.074 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL------GCA 303 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~ 303 (475)
.++..+...|...|++++|.+.+++..... ...+....++..+...|...|++++|...+++..+. +..
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334444444444455555544444443310 000122334444555555555555555555544432 111
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 011905 304 P-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG------GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----- 370 (475)
Q Consensus 304 p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 370 (475)
| ....+..+...+...|++++|...+++..+. +..| ...++..+...|...|++++|.+.++++.+.
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 1 2334455555556666666666666555442 1111 2345566666666677777777766666542
Q ss_pred --CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 371 --GVKPDGL-------ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 371 --~~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
...+... .+..+...+...+.+.++...++...... +....++..+...|.+.|++++|.+++++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS---PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------C---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111111 11222222334455555666666665532 23567788888999999999999999988876
Q ss_pred c
Q 011905 442 K 442 (475)
Q Consensus 442 ~ 442 (475)
.
T Consensus 307 l 307 (311)
T 3nf1_A 307 S 307 (311)
T ss_dssp H
T ss_pred H
Confidence 4
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=1.1e-10 Score=105.89 Aligned_cols=220 Identities=11% Similarity=-0.006 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHh-cCCCCCCcHHHHHHHHHH
Q 011905 216 EDACGLFKVMKRHGCAANLVAYSALLDGIC-------RLGSM-------ERALELLGEMEK-EGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~~li~~ 280 (475)
++|..+|++..+.. +-+...|..++..+. +.|++ ++|..+|++..+ .. +.+...|..++..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~---p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL---KKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---cccHHHHHHHHHH
Confidence 44555555555432 224445555544443 23554 566666666655 11 2234456666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPN-RV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV-RTKRL 357 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~ 357 (475)
+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++.++.+.. +...|........ ..|++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCH
T ss_pred HHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCH
Confidence 66666666666666666553 232 22 5566666666666666666666666654322 2333332222211 24666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG-FLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
++|.++|++..+.. +-+...|..++..+.+.|++++|+.+|++..+.. +.|......|..++..+.+.|+.++|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666665531 1234556666666666666666666666666642 222123456666666666666666666666
Q ss_pred HHHHHcC
Q 011905 437 RFMLKKR 443 (475)
Q Consensus 437 ~~m~~~~ 443 (475)
+++++..
T Consensus 265 ~~a~~~~ 271 (308)
T 2ond_A 265 KRRFTAF 271 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6666554
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=7.1e-11 Score=107.10 Aligned_cols=217 Identities=11% Similarity=0.069 Sum_probs=108.5
Q ss_pred HHHHHHHHhcccCCCCCCHhhHHHHHHHHHh-------cCCh-------hHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011905 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE-------KGDM-------IAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 146 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 211 (475)
++|..+|++..+.. +.+...|..++..+.. .|++ ++|..+|++....-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665532 3455566666555542 3554 5666666665542112234455566666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCcC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH-hcCCHH
Q 011905 212 AGRLEDACGLFKVMKRHGCAAN-LV-AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC-GKGMMK 288 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~ 288 (475)
.|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCHH
Confidence 66666666666666553 222 22 55555666666666666666666665532 122233322222111 245555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVS--SGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (475)
+|..+|++..+.. +-+...+..++..+.+.|++++|..+|+..+... ..| ....|..++..+.+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555554431 1234445555555555555555555555555532 222 23345555555555555555555555
Q ss_pred HHHH
Q 011905 366 KMLA 369 (475)
Q Consensus 366 ~m~~ 369 (475)
++.+
T Consensus 266 ~a~~ 269 (308)
T 2ond_A 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=3.6e-12 Score=116.72 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-Ch
Q 011905 272 VTYTSVIQIFCGKGMMKEALGILDRMEAL----GCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS----VS-SG 341 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~ 341 (475)
..+..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|...+++..+... .+ ..
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 34445555555555555555555544321 100 0122455555566666666666666655543210 00 13
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLAS----GVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.++..+...|...|++++|...+++..+. +-. ....++..+...+...|++++|...+++..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 45566666666777777777766665532 100 11235556666677777777777777776654
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=8.9e-12 Score=120.08 Aligned_cols=195 Identities=10% Similarity=-0.033 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011905 233 NLVAYSALLDGICRLGSM-ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
+...+..+...|...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.|++..+. .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHH
Confidence 444455555555555555 55555555554432 223445555555555555555555555555443 234444555
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC-
Q 011905 312 LIKGFCVE---------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT--------KRLKEAEKLFSKMLASGVK- 373 (475)
Q Consensus 312 li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~- 373 (475)
+...+... |++++|...+++..+.... +...|..+..+|... |++++|++.|++..+....
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 55555555 5566666666665554322 345555566666555 6666666666666654210
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 374 -PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 374 -p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
-+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|++.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALD---PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 255666666666666677777777666666653 224555666666666666666666543
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=1.8e-11 Score=117.92 Aligned_cols=215 Identities=11% Similarity=-0.011 Sum_probs=183.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011905 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM-KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 327 (475)
.++++.+.+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|..
T Consensus 83 ~~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3667777777776632 45788899999999999999 99999999998764 3357889999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 011905 328 LIDKVVAGGSVSSGGCYSSLVVELVRT---------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--------G 390 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g 390 (475)
.|+...+.. |+...+..+...|... |++++|++.|++..+.. .-+...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 999999876 5568899999999999 99999999999999763 33578888888899888 9
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
++++|...|++..+.......+...|..+..+|...|++++|.+.|+++++.. +.+...+..+..++...|+.++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998742101478899999999999999999999999999987 67788899999999999999888754
Q ss_pred c
Q 011905 471 P 471 (475)
Q Consensus 471 ~ 471 (475)
.
T Consensus 315 ~ 315 (474)
T 4abn_A 315 K 315 (474)
T ss_dssp T
T ss_pred h
Confidence 3
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=7.3e-11 Score=98.10 Aligned_cols=162 Identities=18% Similarity=0.115 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (475)
+|..+...+...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+...
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHHHHHH
Confidence 34444444444444444444444444332 1133344444444444444444444444443321 1223333333344
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
+...++++.+...+.+..... +.+...+..+..++.+.|++++|.+.|++..+.+.. +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 444444444444444443321 112333444444444444444444444444433221 233344444444444444444
Q ss_pred HHHHHHHH
Q 011905 361 EKLFSKML 368 (475)
Q Consensus 361 ~~~~~~m~ 368 (475)
++.|++.+
T Consensus 161 ~~~~~~al 168 (184)
T 3vtx_A 161 VKYFKKAL 168 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=6.9e-11 Score=98.26 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=84.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+..+|..+...+.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 34445555555555555555555555554433 23344455555555555555555555555544332 23444444555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 322 (475)
.+...++++.|.+.+.+..... +.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN---TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 5555555555555555555432 2334455555555555555555555555555432 22344555555555555555
Q ss_pred HHHHHHHHHHHh
Q 011905 323 DEAYQLIDKVVA 334 (475)
Q Consensus 323 ~~a~~~~~~~~~ 334 (475)
++|.+.|++.++
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=2.9e-11 Score=113.38 Aligned_cols=297 Identities=7% Similarity=-0.081 Sum_probs=203.2
Q ss_pred HHhcCChhHHHHHHHHhccC--CCCCC--hhhHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCcC---
Q 011905 174 FCEKGDMIAADELMKGMGLI--DLYPD--IITYVSMIKG--FCNAGRLEDAC-----------GLFKVMKRHGCAAN--- 233 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~--~~~~~--~~~~~~li~~--~~~~~~~~~a~-----------~~~~~m~~~g~~~~--- 233 (475)
+.+.+++++|..+++++... .+..| ...|-.++.. ....++.+.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999988552 22233 3333333332 11223333444 56666544311111
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC----
Q 011905 234 -LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP---NVVTYTSVIQIFCGKGMMKEALGILDRMEALG--CA---- 303 (475)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~---- 303 (475)
...+......+...|++++|.+.+++..+.-...+. ...++..+...|...|++++|+..+++..+.- ..
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 111223566778899999999999999873111111 34678889999999999999999998876431 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-C
Q 011905 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS----VS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GV-K 373 (475)
Q Consensus 304 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~ 373 (475)
....++..+...|...|++++|...+++..+... .+ ...++..+...|...|++++|.+.+++..+. +. .
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1235678888999999999999999998875311 11 1247888999999999999999999998862 22 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCh
Q 011905 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL--SSVDSDIHSVLLLGLCRKNH---SVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~ 448 (475)
....++..+...+...|++++|...+++..+.... .+.....+..+...+...|+ +++|+.++++. ...+...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHHHH
Confidence 23567888889999999999999999988764210 01123335677888888898 77777777765 1212334
Q ss_pred hhHHHHHHHHHhcCCHhHHhhccc
Q 011905 449 PYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+..+...|...|+++.|.+..+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~ 363 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFL 363 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 567789999999999999987764
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.4e-11 Score=111.65 Aligned_cols=240 Identities=12% Similarity=0.011 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-C
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLI-------DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------G-C 230 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g-~ 230 (475)
.++..+...+...|++++|..+++++... ..+.....+..+...+...|++++|...+++..+. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444555555555555555555544431 11222334444555555555555555555554432 1 1
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----- 300 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 300 (475)
+....++..+...|...|++++|.+.++++.+.. ...+.....+..+...+...|++++|.+.+++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1223445555555666666666666665554420 001123344555555666666666666666655442
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCh-------hhHHHHHHHHHhcCCHHHHHHHH
Q 011905 301 -GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG-------GSVSSG-------GCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 301 -~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 364 (475)
+..| ...++..+..+|...|++++|...++++.+. ...+.. ..+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1111 2334555566666666666666666665542 111111 11222222233334444455555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 365 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
....... ..+..++..+...|...|++++|.+++++..+.
T Consensus 268 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5544321 223456667777777778888888777777653
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=1.8e-10 Score=107.80 Aligned_cols=233 Identities=9% Similarity=-0.021 Sum_probs=168.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-Cc----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---C-CcHHHHH
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRHGC-AA----NLVAYSALLDGICRLGSMERALELLGEMEKEGGDC---S-PNVVTYT 275 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~-~~~~~~~ 275 (475)
....+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+.+..+..... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456788999999999998876421 12 24577888889999999999999998876521111 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCChhhHH
Q 011905 276 SVIQIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA-----GGSVSSGGCYS 345 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 345 (475)
.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|...+++..+ ..... ..++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHH
Confidence 8888999999999999999877642 2111 234677788889999999999999998877 44333 67788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGV---KPD-GLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
.+...|.+.|++++|...+++..+... .|. ...+..+-..+...++ +++|..++++ .+..+ .....+..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~-~~~~~~~~ 341 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHA-YIEACARS 341 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHH-HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChh-HHHHHHHH
Confidence 899999999999999999999876321 122 2345555556667777 6777766665 22222 23456778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 419 LLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+...|...|++++|.+.+++..+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 889999999999999999988753
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=6.2e-09 Score=103.34 Aligned_cols=406 Identities=11% Similarity=0.007 Sum_probs=267.8
Q ss_pred CCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcC-CccCHHh
Q 011905 57 LDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN---PSIIIDVVEAYKEEG-CVVSVKM 131 (475)
Q Consensus 57 ~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 131 (475)
.+...+...++.+ ..+....+..+|..+... ++.+...+...+..-...++ .+.+..+|+...... .+|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4777777787776 456677777787776653 55677778788887777777 899999999887754 2478888
Q ss_pred HHHHHHHHHhcCCH--------HHHHHHHHhccc-CCC-CC-CHhhHHHHHHHHH---------hcCChhHHHHHHHHhc
Q 011905 132 MKVIFNLCEKARLA--------NEAMWVLRKMPE-FDL-RP-DTIIYNNVIRLFC---------EKGDMIAADELMKGMG 191 (475)
Q Consensus 132 ~~~li~~~~~~~~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~ll~~~~---------~~g~~~~a~~~~~~m~ 191 (475)
|..-+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|+...
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88887766665543 334477776554 354 34 4567777776543 2345678888998888
Q ss_pred cCCCCCChhhHHHHHHHHHhcCC-------------HHHHHHHHHHHHH--CCCC---------------c-----C---
Q 011905 192 LIDLYPDIITYVSMIKGFCNAGR-------------LEDACGLFKVMKR--HGCA---------------A-----N--- 233 (475)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~~~-------------~~~a~~~~~~m~~--~g~~---------------~-----~--- 233 (475)
......-..+|......-...+. ++.|...+.++.. .++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53211123344333222211111 2233444444322 1111 1 0
Q ss_pred HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCC
Q 011905 234 LVAYSALLDGICRLG-------SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL-GILDRMEALGCAPN 305 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~ 305 (475)
...|...+.---..+ ..+.+..+|+++... ++-....|-..+..+...|+.++|. ++|++.... ++.+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 234555554333222 123456778888774 3456778888888888889999997 999998865 4556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------hhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------SVSS------------GGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~~ 364 (475)
...+...+...-+.|++++|.++|+.++... ..|+ ..+|...+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6667778888889999999999999987631 0131 236777788888889999999999
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 365 SKMLAS-GVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 365 ~~m~~~-~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+..+. + .+....|......-.+ .++.+.|..+|+...+.- | .+...|...+......|+.+.|..+|+..+..
T Consensus 458 ~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 458 GKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--A-TDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--C-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999876 2 1222333322222223 356899999999998862 2 35677788888888899999999999999887
Q ss_pred CCC--CChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 443 RIW--LQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 443 ~~~--~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+ -....|...++.-.+.|+.+.+.++.+
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 632 244678888888899999998887764
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=7e-10 Score=103.49 Aligned_cols=298 Identities=11% Similarity=0.033 Sum_probs=187.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CCC----hhhHHHHH
Q 011905 136 FNLCEKARLANEAMWVLRKMPEFDLRPDT----IIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPD----IITYVSMI 206 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li 206 (475)
...+...|++++|...+++........+. ..++.+...+...|+++.|.+.+++...... ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34556678888888888776654322222 2455666777778888888888877654210 111 12355666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCC--c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHH
Q 011905 207 KGFCNAGRLEDACGLFKVMKRH----GCA--A-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSV 277 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 277 (475)
..+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.........+ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 7778888888888888876642 221 2 2345666778888889999999988887763221111 23456777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHH
Q 011905 278 IQIFCGKGMMKEALGILDRMEALGCAPN--RVTIS----TLIKGFCVEGNLDEAYQLIDKVVAGGSVSS---GGCYSSLV 348 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li 348 (475)
...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7888888999999998888764311111 11111 233446788999999998888765443211 22456777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 349 VELVRTKRLKEAEKLFSKMLAS----GVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
..+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++...... .. ..+..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~----~~----g~~~~~ 332 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN----RT----GFISHF 332 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----HH----CCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc----cc----cHHHHH
Confidence 8888889999999888877542 222222 2455566677888999999988888776421 00 111223
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011905 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
...| +....+++.+....
T Consensus 333 ~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTT
T ss_pred HHcc--HHHHHHHHHHHhCC
Confidence 3444 55666666666655
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=5.8e-10 Score=104.04 Aligned_cols=298 Identities=12% Similarity=-0.005 Sum_probs=204.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC----HHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII----TYVSMIKGFCNAGRLEDACGLFKVMKRHGC-AAN----LVAY 237 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~~~ 237 (475)
+......+...|++++|...+++........+.. +++.+...+...|++++|...+++..+... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556778999999999999987644222222 456677788899999999999998765311 112 2345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC--CCCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHH
Q 011905 238 SALLDGICRLGSMERALELLGEMEKEG--GDCS--P-NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA--P--NRVT 308 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~ 308 (475)
..+...+...|++++|...+++..... .+.+ | ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 677888999999999999999876531 1111 2 3455677888899999999999999988754221 1 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYS-----SLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLAC 379 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~ 379 (475)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 778888899999999999999988653211111 1122 233457799999999999998875432211 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC----CCh
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIW----LQG 448 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~----~~~ 448 (475)
..+...+...|++++|...+++..+.... +.....++..+..++...|+.++|.+.+++.... |.. ...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g 336 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 336 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHcc
Confidence 66778889999999999999988654211 1011236677788888999999999999888754 221 111
Q ss_pred hhHHHHHHHHHhcCCH
Q 011905 449 PYVDKIVEHLKKSGDE 464 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~ 464 (475)
.....++..+...+..
T Consensus 337 ~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 337 EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCC
Confidence 2345566666666664
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=2.6e-10 Score=94.42 Aligned_cols=162 Identities=12% Similarity=0.039 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444445555566666666666555432 2344555555555555556665555555554432 233444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 2244445555555555555555555555554432 23344444455555555555555
Q ss_pred HHHHHHHH
Q 011905 291 LGILDRME 298 (475)
Q Consensus 291 ~~~~~~m~ 298 (475)
.+.+++..
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=4e-10 Score=105.41 Aligned_cols=231 Identities=10% Similarity=-0.071 Sum_probs=170.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-CHHH
Q 011905 238 SALLDGICRLGSMERALELLGEMEKEGGDCS---PNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GC-AP-NRVT 308 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p-~~~~ 308 (475)
......+...|++++|...|++..+...... ....++..+...|...|++++|...+++..+. +. .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445567789999999999999876321111 13457788899999999999999999887642 11 11 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAG----GSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKMLA-----SGVKPDGLA 378 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 378 (475)
++.+..+|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|.+.+++..+ .. .....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence 788889999999999999999988753 111 1235688899999999999999999999886 42 222567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCC-CCChhhHH
Q 011905 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLS--SVDSDIHSVLLLGLCRKNH---SVEAAKLARFMLKKRI-WLQGPYVD 452 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~-~~~~~~~~ 452 (475)
+..+...+.+.|++++|...+++..+..... +.....+..+...+...|+ +++|+.++++ .+. +.....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHH
Confidence 8888889999999999999999998753221 1123445666666667788 7777777776 222 23334667
Q ss_pred HHHHHHHhcCCHhHHhhccc
Q 011905 453 KIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l~~ 472 (475)
.+...|.+.|+++.|.+..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~ 360 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYR 360 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 89999999999999987664
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=2.9e-08 Score=98.57 Aligned_cols=377 Identities=9% Similarity=-0.005 Sum_probs=248.2
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-cCC-cc-CHHhHHHHHHHHH--
Q 011905 74 SQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP--------SIIIDVVEAYKE-EGC-VV-SVKMMKVIFNLCE-- 140 (475)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~-- 140 (475)
.+.+..+|..........|+...+...+....+.++. +.+.++|+.... .|. .+ +...|...+....
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 7777788877765432347888888888877665553 344567776543 455 34 5678887777544
Q ss_pred -------hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC-------------hhHHHHHHHHhcc--CCC---
Q 011905 141 -------KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD-------------MIAADELMKGMGL--IDL--- 195 (475)
Q Consensus 141 -------~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-------------~~~a~~~~~~m~~--~~~--- 195 (475)
..++++.+..+|+.........-..+|......--..+. ++.|...+.++.. .++
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 234578899999999863222123344333222111111 2233344433211 011
Q ss_pred -C-----------C--C------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011905 196 -Y-----------P--D------IITYVSMIKGFCNAG-------RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 196 -~-----------~--~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
+ | + ...|...+..--..+ ..+.+..+|++.... ++-+...|-..+..+.+.|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 1 1 0 123444444332222 133456788888775 3447888888888888999
Q ss_pred ChHHHH-HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------H
Q 011905 249 SMERAL-ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG---------CAPN------------R 306 (475)
Q Consensus 249 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~ 306 (475)
+.++|. ++|++.... +|.+...|-..+...-+.|++++|.++|+.+.+.. -.|+ .
T Consensus 358 ~~~~a~r~il~rAi~~---~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQC---IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp CCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 999997 999999874 35667778888888899999999999999987641 0132 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT-KRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 385 (475)
..|...++...+.|+.+.|..+|....+.-.......|...+..-.+. ++.+.|.++|+..++. ..-+...+...+..
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 367778888888899999999999998861111233343333323333 4589999999999876 23355666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011905 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
....|+.+.|+.+|+........+......|...+..-.+.|+.+.+.++.+++.+.- |+......+..-
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~r 583 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNK 583 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHH
Confidence 7888999999999999988653222355788888888889999999999999999885 443444444433
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=4.3e-10 Score=93.14 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..|..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455666777777777777777777776543 3456666777777777777777777777776653 23566666677777
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 324 (475)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN---PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 77777777777777766642 3455566666666667777777777776666543 2345556666666666666666
Q ss_pred HHHHHHHHHh
Q 011905 325 AYQLIDKVVA 334 (475)
Q Consensus 325 a~~~~~~~~~ 334 (475)
|...++...+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=9.7e-10 Score=94.76 Aligned_cols=208 Identities=9% Similarity=-0.106 Sum_probs=157.7
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011905 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
.|+..+......+.+.|++++|.+.|++..+.. .+++...+..+..++...|++++|++.+++..+.. +.+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 467888889999999999999999999998853 12677777778999999999999999999998764 235677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-------GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSV 381 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ 381 (475)
+..++...|++++|...+++..+.... +. ..|..+...+...|++++|++.|++..+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 999999999999999999999886543 33 45788888899999999999999999865 565 355666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
+...+... +..+++++...+. .+...|.... ....+.+++|+..+++.++.. |.+..+...+..
T Consensus 159 l~~~~~~~-----~~~~~~~a~~~~~---~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 159 LGVLFYNN-----GADVLRKATPLAS---SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHHHGGGTT---TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHhccc---CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 66666543 3445566655542 2344444443 334577899999999999887 555555554433
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=1e-10 Score=104.13 Aligned_cols=208 Identities=13% Similarity=0.053 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL------G- 301 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~- 301 (475)
..++..+...|...|++++|...++++.+.. ...+....++..+...|...|++++|.+.+++.... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445555555555566666655555554320 001123345555555666666666666666555432 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 011905 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG------GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS---- 370 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 370 (475)
.+.....+..+...+...|++++|...+++..+. +..| ...++..+...|...|++++|...+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1122445556666666667777766666666543 1111 2455666777777777777777777776642
Q ss_pred ---CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 371 ---GVKPDGL-ACSVMIRELCLGGQVLEGFCLYEDIE----KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 ---~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
...+... .+..+.......+....+.. +..+. ..+..++....++..+...|...|++++|.+++++.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122222 22222222222222222221 11111 111111224567888888889999999999999887754
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=5.3e-10 Score=112.22 Aligned_cols=164 Identities=14% Similarity=0.084 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011905 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 350 (475)
..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...|++.++.+.. +..+|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4445555555555555555555555554432 113444555555555555555555555555544322 34455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHH
Q 011905 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 430 (475)
|...|++++|++.|++.++.. .-+...+..+..+|...|++++|++.|++..+.. +.+...|..+..+|...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccHH
Confidence 666666666666666555432 1134555555556666666666666666665543 224555666666666666666
Q ss_pred HHHHHHHHHH
Q 011905 431 EAAKLARFML 440 (475)
Q Consensus 431 ~A~~~~~~m~ 440 (475)
+|.+.+++++
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555554
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=2.9e-10 Score=114.11 Aligned_cols=166 Identities=13% Similarity=0.003 Sum_probs=126.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 207 (475)
+..+|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677778888888888888888888877653 2356778888888888888888888888877654 345677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
++...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..++...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccH
Confidence 8888888888888888877764 2357778888888888888888888888887743 34567777888888888888
Q ss_pred HHHHHHHHHHHH
Q 011905 288 KEALGILDRMEA 299 (475)
Q Consensus 288 ~~a~~~~~~m~~ 299 (475)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776643
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=1.1e-10 Score=103.98 Aligned_cols=137 Identities=12% Similarity=0.048 Sum_probs=75.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI------D-LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------G 229 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g 229 (475)
...++..+...+...|++++|...+++.... + .+....++..+...+...|++++|...+++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3445556666666666666666666555432 1 0122345555666666666666666666655443 1
Q ss_pred -CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 230 -CAANLVAYSALLDGICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 230 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.+....++..+...|...|++++|.+.+++..+. +...+....++..+...|...|++++|...+++..+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223445666666666667777776666666552 000112344555666666666666666666665543
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=2.7e-09 Score=91.97 Aligned_cols=197 Identities=12% Similarity=0.041 Sum_probs=130.9
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|++.+++..... +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34566666777777788888888888877765533566666667777888888888888888777654 33556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHH
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSV 277 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 277 (475)
..+...|++++|...+++..+... .+. ..|..+...+.+.|++++|++.|++..+.. +. +...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHH
Confidence 888888888888888887777532 233 456677777788888888888888887742 22 34566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011905 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 336 (475)
..+|...| ..+++.+...+ ..+...|.... ....+.+++|...+++..+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 66665443 33344444432 22333443333 233456788888888887754
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=8.5e-09 Score=90.83 Aligned_cols=91 Identities=10% Similarity=-0.137 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC--
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK----------NHSVEAAKLARFMLKKRIWLQ-- 447 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~-- 447 (475)
..+...|...|++++|...|+++.+.....+.....+..+..+|... |++++|.+.++++++.. |.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDSPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTCTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCChH
Confidence 34445566667777777777766665322111334555666666544 67777777777777664 222
Q ss_pred -hhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 448 -GPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 448 -~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
......+...+.+.|+.+.+..+.
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 233445555566666665555443
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=6.2e-08 Score=85.58 Aligned_cols=179 Identities=7% Similarity=0.008 Sum_probs=85.9
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011905 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC-AANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 183 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555433 34444444555556666666666666665544432 1244555555666666666666666666665
Q ss_pred hcCCCCCC-----cHHHHHHHHHHH--Hh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 262 KEGGDCSP-----NVVTYTSVIQIF--CG--KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 262 ~~~~~~~~-----~~~~~~~li~~~--~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 332 (475)
+. .| +..+...+..++ .. .++..+|+.+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 164 ~~----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 52 23 123333333331 11 22566666666665443 233222233333555556666666665544
Q ss_pred HhCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 333 VAGG---------SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 333 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
.+.. -+-+..+...+|......|+ +|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3321 01133444333333334444 555555555543
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=2.9e-08 Score=87.64 Aligned_cols=245 Identities=9% Similarity=0.025 Sum_probs=148.7
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
+-.--.|++..++.-...+... .......-+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3334468888888755554331 2223334455777777776642 11133333333333333 222
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+. ..-+...+...+..+.+.|+.+.|.+.++.
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667777766654 44555666777888888888888888888766431 013566777778888888888888888888
Q ss_pred HHHcCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 297 MEALGCAP-----NRVTISTLIKGFC--VEG--NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 297 m~~~~~~p-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
|.+. .| +..+...++.++. ..| ++.+|..+|+++.+.. |+...-..++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8765 44 3455556665532 233 7888888888876653 33222334444777888888888888765
Q ss_pred HHC-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 368 LAS-----GV----KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 368 ~~~-----~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
.+. +. .-|..++..+|......|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 532 10 2244555455555555565 7777888887754
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=1.2e-08 Score=79.18 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011905 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
..+...+...|++++|.++++++...+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 333444444444444444444443322 2233333444444444444444444444444332 11333344444444444
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 83 ~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444444321 1223334444444444444444444444433
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=1.1e-08 Score=90.20 Aligned_cols=100 Identities=9% Similarity=-0.066 Sum_probs=53.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD---IITYVSMIKGFCNAGRLEDACGLFKVMKRHGC--AANLVAY 237 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~ 237 (475)
+...+-.+...+.+.|++++|...|+++.... +.+ ...+..+..++.+.|++++|...|+...+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44455555556666666666666666665532 112 34455555566666666666666666555421 1113344
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHhc
Q 011905 238 SALLDGICR--------LGSMERALELLGEMEKE 263 (475)
Q Consensus 238 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~ 263 (475)
..+..++.+ .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 455555555 56666666666655553
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=1.4e-08 Score=91.03 Aligned_cols=90 Identities=11% Similarity=-0.021 Sum_probs=42.5
Q ss_pred HHHhcCChhHHHHHHHHhccC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---Cc--CHHHHHHHHH
Q 011905 173 LFCEKGDMIAADELMKGMGLI----DLYPD-IITYVSMIKGFCNAGRLEDACGLFKVMKRHGC---AA--NLVAYSALLD 242 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~~--~~~~~~~ll~ 242 (475)
.|...|++++|.+.|++.... |-+++ ..+|+.+..+|.+.|++++|+..+++..+... .+ -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666555331 11111 33455555555555666665555555443210 00 0224444445
Q ss_pred HHHhc-CChHHHHHHHHHHHh
Q 011905 243 GICRL-GSMERALELLGEMEK 262 (475)
Q Consensus 243 ~~~~~-g~~~~a~~~~~~~~~ 262 (475)
.|... |++++|+..|++..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHH
Confidence 55553 555555555554443
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=1.6e-08 Score=90.69 Aligned_cols=175 Identities=10% Similarity=-0.036 Sum_probs=97.5
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCChHHH
Q 011905 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCAAN-LVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~g~~~~a 253 (475)
++++|...|++. ...|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777776665 33556677777777777766542 21111 45677777777777777777
Q ss_pred HHHHHHHHhcCCCC-CC--cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 011905 254 LELLGEMEKEGGDC-SP--NVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAP-N----RVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 254 ~~~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~~~~~~ 324 (475)
+..+++..+..... .+ -..+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77777665521000 00 123555666666664 66666666666654321000 0 2345555556666666666
Q ss_pred HHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 325 AYQLIDKVVAGGSVSSG------GCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
|...|++..+....... ..|..+..++...|++++|...|++..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666554332211 134445555556666666666666555
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=2.6e-08 Score=77.24 Aligned_cols=128 Identities=13% Similarity=0.225 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHHHHHH
Confidence 4445555555666666666666555543 2244555555555555666666666666555432 23344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555555432 12334444444555555555555555554443
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=9.6e-07 Score=84.98 Aligned_cols=354 Identities=10% Similarity=-0.028 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCC-HHHHHHHHHhcccC-CC-CCCHhhHHHH
Q 011905 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL-ANEAMWVLRKMPEF-DL-RPDTIIYNNV 170 (475)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~-~~-~~~~~~~~~l 170 (475)
...|..++..+-. ++.+.+..+|+..... .|+...|...+....+.+. .+....+|+..... |. +.+...|...
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 3444444444433 5666666676666553 3566666666665555442 23444555554432 32 2345556555
Q ss_pred HHHHH----hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHCCCCcC
Q 011905 171 IRLFC----EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC-------------NAGRLEDACGLFKVMKRHGCAAN 233 (475)
Q Consensus 171 l~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-------------~~~~~~~a~~~~~~m~~~g~~~~ 233 (475)
+..+. ..++.+.+.++|++........-...|......-. ..+.+..|..+++.+...--..+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 55433 23456666667766664211101112221111100 01122333444443332100013
Q ss_pred HHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011905 234 LVAYSALLDGICRLG--S-----MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
...|...+.--...+ - .+.+..+|+++.... +.+...|-..+..+.+.|+.++|..++++.... |..
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~---p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~ 245 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF---YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDG 245 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCS
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCc
Confidence 345555444322211 1 345667888877642 455677777777788888888888888888876 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------SVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (475)
..+.. .|....+.++. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|++. +.. ..
T Consensus 246 ~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~ 317 (493)
T 2uy1_A 246 MFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GV 317 (493)
T ss_dssp SHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CC
T ss_pred HHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CC
Confidence 22211 22222111221 22222110 001 1244666666666777888899999888 321 22
Q ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011905 375 DGLACSVMIREL-CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 375 ~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
+...|......- ...++.+.|+.+|+...+.. | .+...+...++...+.|+.+.|..+|+.+ ......|..
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~-~~~~~~~~yid~e~~~~~~~~aR~l~er~-----~k~~~lw~~ 389 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--P-DSTLLKEEFFLFLLRIGDEENARALFKRL-----EKTSRMWDS 389 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHS-----CCBHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHHHHHH
Confidence 333443221111 22346888999998888753 2 23455666777777888888888888886 235677778
Q ss_pred HHHHHHhcCCHhHHhhccc
Q 011905 454 IVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 454 l~~~~~~~g~~~~a~~l~~ 472 (475)
.+..-...|+.+.+..+++
T Consensus 390 ~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 7777777888888776553
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=7.1e-08 Score=81.63 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=76.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011905 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
+..+|.+.|++++|...|++..+.. |.+...+..+..++...|++++|+..|++..+.. +.+...+..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 6667777777777777777776643 3456667777777777777777777777776653 22455566666555444
Q ss_pred CC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011905 320 GN--LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 320 ~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 378 (475)
|+ .+.+...++.... ..|....+.....++...|++++|...|++.++. .|+...
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 33 2334444444332 1222223333444555667777777777777643 566443
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1.7e-07 Score=79.51 Aligned_cols=160 Identities=12% Similarity=0.014 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG----NLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
.+..+...|...+++++|++.|++..+.| +...+..|-..|.. + ++++|.+.|+...+.+ +...+..|.
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33334444444444444444444444332 22333333333333 3 4444444444444433 223344444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 349 VELVR----TKRLKEAEKLFSKMLASGVK-PDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 349 ~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
..|.. .+++++|++.|++..+.|.. .+...+..|-..|.. .++.++|...|++..+.+- +...+..+
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~~a~~~L 168 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSR----TGYAEYWA 168 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSC----TTHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC----CHHHHHHH
Confidence 44443 44555555555555543211 013444444444444 4556666666666555411 22344445
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 011905 420 LLGLCRK-N-----HSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 i~~~~~~-g-----~~~~A~~~~~~m~~~~ 443 (475)
...|... | ++++|.++|++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5554432 2 5666666666666555
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=1.4e-07 Score=80.90 Aligned_cols=192 Identities=11% Similarity=-0.033 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 011905 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR--VTIS 310 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~ 310 (475)
+...+..+...+.+.|++++|...|+++.+.....+.....+..+..+|.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566667788889999999999999988753211122456777888999999999999999998875322111 2344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011905 311 TLIKGFCV------------------EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 311 ~li~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 372 (475)
.+..++.. .|++++|...|+++++..+. +...+.+.... + .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----V------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----H------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----H------HHHHHHH----
Confidence 44444443 34455555555555544321 11111111000 0 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.....+...+.+.|++++|...|+++.+.....+.....+..+..++.+.|++++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112344567788999999999999888642211123567888888889999999999998887765
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=7.1e-08 Score=81.64 Aligned_cols=126 Identities=10% Similarity=0.024 Sum_probs=78.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
+..++.+.|++++|...|++..+.. +-+...+..+...|...|++++|...|++..+.. |.+..+|..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHH
Confidence 6677777788888888877777764 2366777777777888888888888888777743 34566677776666554
Q ss_pred CC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011905 285 GM--MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 285 g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 336 (475)
|+ .+.+...++.... ..|....+...-.++...|++++|...|++.++..
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 43 3334444444321 12222233334445556677888888888877644
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=7.9e-09 Score=82.47 Aligned_cols=143 Identities=10% Similarity=-0.026 Sum_probs=102.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
.+...|++++|...+......... +...+..+...|.+.|++++|++.|++.++.. +-+...|..+...+...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 344556777777777776553221 23456667788888888888888888887653 2356777778888888888888
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL-ARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
|...|++..+.. +.+..+|..+...|.+.|++++|.+. ++++++.. |-++.++....+.+...|+
T Consensus 84 A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELN---PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888888888764 23677788888888888888766654 57777776 6677777777777777664
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=2.4e-07 Score=79.38 Aligned_cols=202 Identities=12% Similarity=-0.012 Sum_probs=100.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCH-HHHHH
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-P-DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA-ANL-VAYSA 239 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~-~~~~~ 239 (475)
...+..+...+.+.|++++|...|+++...... | ....+..+..++.+.|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344455556666667777777777766553211 1 1234555666666667777777777666654321 111 12333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 011905 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-VTISTLIKGFCV 318 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~ 318 (475)
+..++.+.|.. .+. .|..+...+...|++++|+..|+++.+.. |+. .........
T Consensus 84 ~g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l--- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL--- 139 (225)
T ss_dssp HHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH---
T ss_pred HHHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH---
Confidence 33333332110 000 01111222234567777777777776542 322 111111100
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 011905 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLE 394 (475)
Q Consensus 319 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~ 394 (475)
..+...+. .....+...|.+.|++++|+..|+++++. .|+. ..+..+..++.+.|+.++
T Consensus 140 -------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 140 -------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp -------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 00000000 01223556677777777777777777754 3332 356666777777777777
Q ss_pred HHHHHHHHHHcC
Q 011905 395 GFCLYEDIEKIG 406 (475)
Q Consensus 395 a~~~~~~~~~~~ 406 (475)
|.+.++.+...+
T Consensus 203 A~~~~~~l~~~~ 214 (225)
T 2yhc_A 203 AEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhC
Confidence 777777777654
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=2.2e-07 Score=78.79 Aligned_cols=176 Identities=11% Similarity=0.041 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC----CHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG----MMKEALG 292 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~ 292 (475)
+|++.|++..+.| +...+..+...|...+++++|.+.|++..+.+ +...+..+...|.. + ++++|++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 3555666666654 55666666666777777777777777776632 44555556666665 5 6777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHHHHHHH
Q 011905 293 ILDRMEALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSV-SSGGCYSSLVVELVR----TKRLKEAEKL 363 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 363 (475)
+|++..+.| +...+..|-..|.. .+++++|...|++..+.+.. .....+..|...|.. .+++++|+..
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 777776654 45556666666655 66777777777777766532 014556667777776 6778888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 011905 364 FSKMLASGVKPDGLACSVMIRELCLG-G-----QVLEGFCLYEDIEKIG 406 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 406 (475)
|++..+. ..+...+..|-..|... | +.++|...++...+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8887765 22334555555555443 2 7888888888887776
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=5e-08 Score=98.29 Aligned_cols=174 Identities=9% Similarity=-0.029 Sum_probs=123.9
Q ss_pred HhcCChhHHHHHHHHhc--------cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011905 175 CEKGDMIAADELMKGMG--------LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
...|++++|++.+++.. ... +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888776 322 4455677777788888888888888888877754 2366777888888888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 326 (475)
.|++++|.+.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888887753 3456677778888888888888 88888877653 235667777888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011905 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
..|++..+.+.. +...+..+..++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 888877665432 34556666666655444
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.91 E-value=1.7e-06 Score=77.07 Aligned_cols=232 Identities=10% Similarity=-0.013 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----Hhc---CC
Q 011905 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----CGK---GM 286 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 286 (475)
++|+++++.++..... +..+|+.--..+...| ++++++++++.+.... +-+..+|+.--..+ ... ++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHHHhccccCC
Confidence 4555555555554311 3344454444455555 5666666666655532 23334444333333 333 45
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC------HH
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR------LK 358 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~ 358 (475)
+++++++++.+.+.. +-+...|+.-.-.+.+.|.++ ++++.++.+++.++. |..+|+.-...+...++ ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 666666666665543 224555555444555555555 666666666665543 44445544444444454 67
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL-EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 437 (475)
++++.+++++... .-|...|+.+-..+.+.|+.. .+..+.+++.+.+-....+...+..+.+.|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 7777777777653 235566666666666666533 34445555544320011256677777788888888888888888
Q ss_pred HHHHcCCCCChhhHHHH
Q 011905 438 FMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 438 ~m~~~~~~~~~~~~~~l 454 (475)
.+.+.--|.....|+..
T Consensus 283 ~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHTTCGGGHHHHHHH
T ss_pred HHHhccChHHHHHHHHH
Confidence 87763225555555543
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.89 E-value=1.6e-06 Score=77.25 Aligned_cols=220 Identities=10% Similarity=-0.007 Sum_probs=125.3
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC--CHHHHHHHHHhcccCCCCCCHhhHHHHHHHH----Hhc---C
Q 011905 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR--LANEAMWVLRKMPEFDLRPDTIIYNNVIRLF----CEK---G 178 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~---g 178 (475)
...++|+++.+.+...+ +-+..+|+.--..+...+ +++++++.++.+.... +-+..+|+.--..+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 34456677777666654 445556666555666666 7777777777776644 23445555544444 333 5
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC------h
Q 011905 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE--DACGLFKVMKRHGCAANLVAYSALLDGICRLGS------M 250 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~------~ 250 (475)
++++++++++++.+.. +.+-.+|+.-.-.+.+.|.++ ++++.++.+.+.... |...|+.-...+.+.|+ +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 6667777777666544 445566665555555566655 666666666665433 55566555555555554 6
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011905 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE-ALGILDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~ 327 (475)
+++++.++++.... +-|...|+..-..+.+.|+... +..+..++.+.+ -..+...+..+..+|.+.|+.++|.+
T Consensus 203 ~eEl~~~~~aI~~~---p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIVKC---PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 66666666666543 3556666666666666555333 333444433221 12244555555566666666666666
Q ss_pred HHHHHHh
Q 011905 328 LIDKVVA 334 (475)
Q Consensus 328 ~~~~~~~ 334 (475)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=6.5e-08 Score=86.40 Aligned_cols=167 Identities=11% Similarity=-0.030 Sum_probs=108.7
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH-
Q 011905 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM- 205 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l- 205 (475)
.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...++++... .|+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 344555566667777788888888888776643 235667777777777888888888888777654 3443322222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011905 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
...+...++.++|...+++..+.. +.+...+..+...|...|++++|...|.++.+...+ ..+...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-AADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-GGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-cccchHHHHHHHHHHHcC
Confidence 223555666667777777776654 335667777777777777777777777777764310 112556777777777777
Q ss_pred CHHHHHHHHHHHH
Q 011905 286 MMKEALGILDRME 298 (475)
Q Consensus 286 ~~~~a~~~~~~m~ 298 (475)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777777766543
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=4.1e-08 Score=80.68 Aligned_cols=161 Identities=14% Similarity=0.020 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHH-HH
Q 011905 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG-FC 210 (475)
Q Consensus 132 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~ 210 (475)
+......+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3344455666666666666666665532 2345566666666666666666666666665432 233222221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..++..+|...+++..+.. +-+...+..+...+...|++++|...|+++.+... -..+...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-GAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-ccChHHHHHHHHHHHHHhCCCCcH
Confidence 1112223455555555432 11345555555555555555655555555555310 001133455555555555555555
Q ss_pred HHHHHHH
Q 011905 291 LGILDRM 297 (475)
Q Consensus 291 ~~~~~~m 297 (475)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1.9e-07 Score=93.98 Aligned_cols=173 Identities=10% Similarity=-0.054 Sum_probs=142.9
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011905 210 CNAGRLEDACGLFKVMK--------RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|++.|+++.+.. +.+...|..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHH
Confidence 78899999999999988 432 3466788889999999999999999999998853 45778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011905 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 361 (475)
...|++++|++.|++..+.. +-+...+..+..++.+.|++++ .+.|++.++.+.. +...|..+..++.+.|++++|+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998764 2356788899999999999999 9999999887644 5678999999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 011905 362 KLFSKMLASGVKPD-GLACSVMIRELCLGGQ 391 (475)
Q Consensus 362 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 391 (475)
+.|++..+. .|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999998855 566 4566666677666554
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=6.5e-08 Score=86.43 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HH
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI-RE 385 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~ 385 (475)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++.... .|+........ ..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 33444444445555555555555555443322 3344455555555555555555555554432 23322211111 12
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCC
Q 011905 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ--GPYVDKIVEHLKKSGD 463 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~ 463 (475)
+...++.+.|...+++..+.. +.+...+..+...+...|++++|.+.++++++.. +.+ ...+..++..+...|+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 334444444555555554443 1244455555555555555555555555555543 111 3444555555555555
Q ss_pred HhHHh
Q 011905 464 EELIT 468 (475)
Q Consensus 464 ~~~a~ 468 (475)
.+.|.
T Consensus 271 ~~~a~ 275 (287)
T 3qou_A 271 GDALA 275 (287)
T ss_dssp TCHHH
T ss_pred CCcHH
Confidence 44443
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=1.1e-07 Score=93.84 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=103.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 326 (475)
.|++++|.+.+++..+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888887642 3456778888888888888888888888887653 335677778888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 011905 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG---GQVLEGFCLYEDIE 403 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~ 403 (475)
+.+++..+.... +...+..+..+|...|++++|.+.+++..+.. ..+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888888776533 46677888888888888888888888887653 23456777777777778 88888888888888
Q ss_pred HcC
Q 011905 404 KIG 406 (475)
Q Consensus 404 ~~~ 406 (475)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 765
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=1.5e-08 Score=80.78 Aligned_cols=109 Identities=7% Similarity=-0.046 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 142 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
.|++++|+..++...... +-+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..
T Consensus 10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 344445554444443321 1122233344444555555555555555444332 22344444444455555555555555
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011905 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 222 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
|+...+... -+..++..+...|.+.|++++|
T Consensus 88 ~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 88 YRRSVELNP-TQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCChHHH
Confidence 554444321 1344444444445555544433
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=6.2e-08 Score=87.51 Aligned_cols=162 Identities=11% Similarity=0.029 Sum_probs=89.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC--CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 011905 241 LDGICRLGSMERALELLGEMEKEGG--DCS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTL 312 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~--~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l 312 (475)
...|...|++++|.+.|.+..+... +-+ .-..+|+.+...|...|++++|+..|++..+. |-.. -..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777888888887777655210 000 11345666777777777777777777765432 1110 12345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 011905 313 IKGFCVEGNLDEAYQLIDKVVAGGSVS-----SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVM 382 (475)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l 382 (475)
...|.. |++++|...|++.++..... ...++..+...|...|++++|+..|++..+... .++ ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 566655 67777776666655421100 124455666666666666666666666654211 111 1133344
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 011905 383 IRELCLGGQVLEGFCLYEDIE 403 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~ 403 (475)
...+...|++++|...|++..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 444555566666666666665
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=1e-07 Score=94.20 Aligned_cols=152 Identities=8% Similarity=-0.055 Sum_probs=90.6
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 011905 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 187 (475)
+++++|.+.++...+.. +-+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56667777776665543 3456666667777777777777777777766643 235666777777777777777777777
Q ss_pred HHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 011905 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---GSMERALELLGEMEKE 263 (475)
Q Consensus 188 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 263 (475)
++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 7766543 3345666677777777777777777777766653 22556666677777777 7777777777777664
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.82 E-value=1.1e-07 Score=78.03 Aligned_cols=161 Identities=10% Similarity=0.013 Sum_probs=124.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH-HHh
Q 011905 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL-FCE 176 (475)
Q Consensus 98 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~~~ 176 (475)
......+...|+++.|...++...+.. +-+...+..+...+.+.|++++|+..|++..+.. |+...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 345567778899999999999877654 5577888889999999999999999999998754 354444333222 223
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChHHHHH
Q 011905 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
.+....|.+.+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 334445788888887654 4467889999999999999999999999999875432 35688899999999999999999
Q ss_pred HHHHHHh
Q 011905 256 LLGEMEK 262 (475)
Q Consensus 256 ~~~~~~~ 262 (475)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987764
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=8.7e-08 Score=86.57 Aligned_cols=186 Identities=12% Similarity=0.024 Sum_probs=112.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCC-CcHHHHHHHH
Q 011905 207 KGFCNAGRLEDACGLFKVMKRH----GCA-ANLVAYSALLDGICRLGSMERALELLGEMEKEG--GDCS-PNVVTYTSVI 278 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~-~~~~~~~~li 278 (475)
..|...|++++|...|.+..+. |-. .-..+|+.+...|.+.|++++|+..|++..+.. .+-+ ....++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666655432 100 013456667777777788888877777665420 1101 1134566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHH
Q 011905 279 QIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVSS-GGCYSSLV 348 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li 348 (475)
..|.. |++++|+..|++..+. |... ...++..+...|.+.|++++|...|++..+. +..+. ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77777 8888888888776542 1100 1356777778888888888888888887653 21111 22566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHH
Q 011905 349 VELVRTKRLKEAEKLFSKMLASGVKPDG------LACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~ 397 (475)
.++...|++++|...|++.. . .|+. .....++.++ ..|+.+....
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 77777889999999888887 3 3321 2234444444 4566655544
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=3.3e-06 Score=75.54 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNH-SVEAAKLARFML 440 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 440 (475)
++..+...|...|++++|...+++..+. +..+ .-..+|..+..+|.+.|+ +++|.+.+++++
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA-LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT-THHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3444444555555555555555544432 1100 113455555555555553 455555555554
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=5.7e-06 Score=73.96 Aligned_cols=162 Identities=10% Similarity=-0.016 Sum_probs=82.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 011905 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVV----TYTSVIQIFCGKGMMKEALGILDRMEALGCA-PN----RVTIST 311 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 311 (475)
+..+...|++++|.+++++..... ...|+.. .+..+...+...|++++|+..+++....... ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 455566666666666666665531 1112211 2223444445555666666666666552211 11 124556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKVVA----G-GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKPD-GLACS 380 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~ 380 (475)
+..+|...|++++|...+++..+ . +..+ ...+|..+...|.+.|++++|...+++..+. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666666666666666552 1 1111 1234555666666666666666666655431 11122 34555
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHH
Q 011905 381 VMIRELCLGGQ-VLEGFCLYEDIE 403 (475)
Q Consensus 381 ~li~~~~~~g~-~~~a~~~~~~~~ 403 (475)
.+..++...|+ .++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55555666663 466666555544
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=1.4e-06 Score=73.79 Aligned_cols=130 Identities=10% Similarity=-0.041 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011905 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
..+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...++...+.... +...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 344556667777777777777777653 456677777777777777777777777777665422 456677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 352 VRTKRLKEAEKLFSKMLASGVKPD---------------GLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
...|++++|.+.|++..+...... ...+..+..++...|++++|...+++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 777777777777777776421110 1455556666666777777777777666643
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=6.8e-06 Score=73.47 Aligned_cols=169 Identities=9% Similarity=-0.059 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--hh
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-----RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV---SS--GG 342 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 342 (475)
.+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444456666777777777777776655422111 112334555667778888888888887753221 11 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCch
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS-GVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDS 413 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 413 (475)
+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|...+++..+... .+..-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999888731 00122 25778888889999999999999998775421 111125
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 011905 414 DIHSVLLLGLCRKNHSVEA-AKLARFMLK 441 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 441 (475)
.+|..+..+|.+.|++++| ...+++.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7788899999999999999 777887764
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=1.5e-06 Score=73.48 Aligned_cols=129 Identities=14% Similarity=-0.011 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|++++|.+.|++.. .|+...|..+...+...|++++|...|++..+.. +.+...+..+..+|.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344555556666666666666553 3455566666666666666666666666665543 2345566666666666
Q ss_pred cCChHHHHHHHHHHHhcCCC------------CC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 247 LGSMERALELLGEMEKEGGD------------CS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~------------~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.|++++|.+.|++..+...+ .. .....+..+..++...|++++|.+.|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666666653210 00 11255666666677777777777777766654
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=7.4e-07 Score=68.44 Aligned_cols=110 Identities=7% Similarity=-0.120 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+......|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|+..+++..+.+ +.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---hhhhHHHHHHHH
Confidence 456667778888888888888888887653 3356777778888888888888888888888865 236778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
++...|++++|++.|++.++.. |-+......+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 8888888888888888888876 555555555443
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=1.2e-06 Score=66.64 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+...|++++|.+.++++.+.. ..+...+..+...+...|++++|..+++++.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHH
Confidence 3456666677777777777777777776542 2345666667777777777777777777777654 23556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
..+...|++++|.+.++++.... +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 77777888888888887777765 45555565555555443
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=2.2e-05 Score=70.77 Aligned_cols=178 Identities=10% Similarity=0.046 Sum_probs=127.6
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc-C-C
Q 011905 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK-G-D 179 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g-~ 179 (475)
.+...+..++|+++.+.+...+ +-+..+|+.--..+...| .+++++..++.+.... +-+..+|+.-..++.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3444556667888888888776 556677777666777777 5899999999988765 34777888877777776 6 8
Q ss_pred hhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--
Q 011905 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE--------DACGLFKVMKRHGCAANLVAYSALLDGICRLGS-- 249 (475)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-- 249 (475)
+++++++++++.+.. +.+...|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 889999999998765 556777766554444444444 788888888876543 77788877777777775
Q ss_pred -----hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011905 250 -----MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 250 -----~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
++++++.++++.... +-|...|+-+-..+.+.|+.
T Consensus 219 ~~~~~~~eELe~~~~aI~~~---P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI---PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCC
Confidence 678888888877753 45677777766666665543
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.65 E-value=1.1e-06 Score=67.43 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccCHHHHHHHH
Confidence 3456667777777788888888887777542 2356667777777778888888888888877754 23566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (475)
..+...|++++|.+.+++.++.. +.+...+..+..++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888776 55667777777777777764
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=1.1e-06 Score=67.87 Aligned_cols=118 Identities=8% Similarity=-0.132 Sum_probs=83.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
+...+..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCchHHHHHH
Confidence 34566777777777888888888887777542 2256667777777777888888888888777754 2356777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011905 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
..++.+.|++++|.+.+++.++.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 788888888888888888887765 445556666666666555
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=6.8e-05 Score=72.07 Aligned_cols=344 Identities=8% Similarity=-0.081 Sum_probs=210.2
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhc-CC-ccCHHhHHHHHHHHH----hcCC
Q 011905 72 SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN-PSIIIDVVEAYKEE-GC-VVSVKMMKVIFNLCE----KARL 144 (475)
Q Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~~~ 144 (475)
++.+.+..+|...... .|+..+|...+....+.++ .+.+..+|+..... |. +.+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6778888888877653 2588888888877766553 45566777776553 42 447778877777654 3467
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHHHH-------------hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011905 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC-------------EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 145 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-------------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 211 (475)
.+.+..+|++........-...|......-. ..+.+..|..+++.+...--..+...|...+.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 8889999999987421111122222211110 011233344444443321001133456555554322
Q ss_pred cC--C-----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011905 212 AG--R-----LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 212 ~~--~-----~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
.+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|.+++++.... |.+...|.. |+..
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~----P~~~~l~~~----y~~~ 255 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM----SDGMFLSLY----YGLV 255 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHHH----HHHH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcHHHHHH----HHhh
Confidence 11 1 345778999888753 456888888888899999999999999999984 333333322 2222
Q ss_pred CCHHHHHHHHHHHHHcC---------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH--HHHH
Q 011905 285 GMMKEALGILDRMEALG---------C---APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS--LVVE 350 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~---------~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~ 350 (475)
...++. ++.+.+.- . ......|...+....+.++++.|..+|+.. ... ..+...|.. .+..
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 222222 22222110 0 011245666677777788899999999999 321 223334432 2322
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHH
Q 011905 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 430 (475)
.. .++.+.|..+|+...+.- .-+...+...++-....|+.+.|+.+|+.+.+ ....|...+..-...|+.+
T Consensus 331 ~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 331 YA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHH
T ss_pred HH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHH
Confidence 22 336999999999998752 12344455567767788999999999999721 5678888888778889999
Q ss_pred HHHHHHHHHHH
Q 011905 431 EAAKLARFMLK 441 (475)
Q Consensus 431 ~A~~~~~~m~~ 441 (475)
.+.++++++..
T Consensus 402 ~~r~v~~~~~~ 412 (493)
T 2uy1_A 402 LFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888874
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=3.6e-06 Score=75.27 Aligned_cols=169 Identities=9% Similarity=-0.062 Sum_probs=102.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC-----HhhHHHHHHHHHhcCChhHHHHHHHHhccCCC---CCC--h
Q 011905 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-----TIIYNNVIRLFCEKGDMIAADELMKGMGLIDL---YPD--I 199 (475)
Q Consensus 130 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~--~ 199 (475)
..+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|++.+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556677788888888888877665422111 12233455566677788888888777654221 111 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCc
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKR---H-GCAA--NLVAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPN 270 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ 270 (475)
.+|+.+...|...|++++|...|++..+ . +-.+ ...++..+...|.+.|++++|.+.+++..+.. .....-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677777777778888888887777652 1 1111 12466777777777888888887777765421 000011
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 011905 271 VVTYTSVIQIFCGKGMMKEA-LGILDRME 298 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 298 (475)
..+|..+...|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45666677777777777777 55555443
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.60 E-value=3.2e-05 Score=69.75 Aligned_cols=244 Identities=10% Similarity=-0.052 Sum_probs=112.4
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-C-ChHHHHH
Q 011905 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL-G-SMERALE 255 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-g-~~~~a~~ 255 (475)
..++|+++++++...+ +-+..+|+.--..+...| ++++++++++.+.....+ +..+|+.-...+.+. + +++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3345555555555433 223334444444444444 355555555555554322 444444444444443 4 4555555
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011905 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 335 (475)
+++++.+.. +.+-.+|+.-.-.+.+.|.++. .+ ...+.++++.++++++.
T Consensus 147 ~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 147 YIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHHHh
Confidence 555555432 2344444443333333333220 00 00012455555555554
Q ss_pred CCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------------
Q 011905 336 GSVSSGGCYSSLVVELVRTKR-------LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV---------------- 392 (475)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---------------- 392 (475)
++. |..+|+.....+.+.++ ++++++.+++++... .-|...|+.+-..+.+.|+.
T Consensus 197 dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~ 274 (349)
T 3q7a_A 197 DGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL 274 (349)
T ss_dssp CTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred CCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccc
Confidence 432 34444444444444443 455666665555432 22344444443333333332
Q ss_pred ----HHHHHHHHHHHHcC---CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 393 ----LEGFCLYEDIEKIG---FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 393 ----~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
.....+..++...+ ............+++.|...|+.++|.++++.+.+.--+.....|+-..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 275 NPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 12222222222211 00013566777888888888888888888888875543555555554433
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.60 E-value=1.9e-06 Score=69.44 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|+++.|...|++..... +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++.+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444444555555555554444322 2234444444444444555555555554444432 1234444444445555
Q ss_pred cCChHHHHHHHHHHHh
Q 011905 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 5555555555554444
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=2.2e-06 Score=65.06 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444444444444444443322 2233344444444444444444444444444332 123334444444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 011905 246 RLGSMERALELLGEMEK 262 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~ 262 (475)
..|++++|.+.++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444443
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=3.5e-06 Score=67.85 Aligned_cols=127 Identities=11% Similarity=0.026 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
+..+...+...|++++|...|+...+.... +..++..+...+...|++++|...+++..+.. ..+...+..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 444445555566666666666665554322 34556666666666666666666666666542 2244556666666667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 011905 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL--LLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 440 (475)
.|++++|...++++.+... .+...+..+ +..+...|++++|++.+.+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP---HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777666531 233344322 333556677777777766544
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=2.1e-06 Score=65.84 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444444555555555555555444332 2334444444444555555555555555444432 123444444445555
Q ss_pred hcCChHHHHHHHHHHHh
Q 011905 246 RLGSMERALELLGEMEK 262 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~ 262 (475)
..|++++|.+.|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 55555555555554444
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=6.4e-06 Score=65.25 Aligned_cols=103 Identities=13% Similarity=-0.017 Sum_probs=85.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|...|++..+.. +.+...|..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHHH
Confidence 4567778888899999999999999998763 2357788888889999999999999999999875 24678889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
.+|.+.|++++|.+.|++.++.. |+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999999876 4443
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1.5e-06 Score=72.82 Aligned_cols=100 Identities=9% Similarity=-0.152 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCCch
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIG---FLSSVDS 413 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~ 413 (475)
++..+...|...|++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+.. ..+....
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444555555555555555555554431 1011 12234445555556666666666666554321 0000112
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.++..+...+...|++++|.+.+++.++.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 33455666666777777777776666543
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=2.4e-06 Score=65.80 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=55.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44455555556666666666666666555432 2344555555555556666666666666555542 224555555556
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 011905 243 GICRLGSMERALELLGEMEK 262 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~ 262 (475)
++.+.|++++|.+.|++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665554
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1.5e-06 Score=72.87 Aligned_cols=156 Identities=14% Similarity=-0.002 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CCCcHHHHHHHHHHHHhcCCHH
Q 011905 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--GD-CSPNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~~~~li~~~~~~g~~~ 288 (475)
.|++++|.++++.+... ......++..+...+...|++++|...+++..... .+ .+....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 44555555533333221 11233444555555555555555555555444310 00 0112233444445555555555
Q ss_pred HHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCH
Q 011905 289 EALGILDRMEAL----GCAP--NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVS-SGGCYSSLVVELVRTKRL 357 (475)
Q Consensus 289 ~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~ 357 (475)
+|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+. +... ...++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 555555443321 1011 1223344444455555555555555444321 1000 012234444555555555
Q ss_pred HHHHHHHHHHH
Q 011905 358 KEAEKLFSKML 368 (475)
Q Consensus 358 ~~A~~~~~~m~ 368 (475)
++|.+.+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.55 E-value=1.9e-06 Score=75.04 Aligned_cols=190 Identities=11% Similarity=-0.008 Sum_probs=114.2
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------
Q 011905 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSV-------IQIFCGKGMMKEALGILDRMEALGCAPN------------- 305 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~p~------------- 305 (475)
..++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccc
Confidence 4567777777777776643 2345556555 3444444444444444433322 1111
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 011905 306 ---------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD- 375 (475)
Q Consensus 306 ---------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~- 375 (475)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 1223345566777788888888887776654 322245555567778888888888887554321 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 376 -GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 376 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
...+..+-.++...|++++|+..|++.......|............++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23556666777888888888888888774322132233455666777778888888888888888775
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=1.3e-06 Score=69.23 Aligned_cols=99 Identities=11% Similarity=-0.085 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...+++..+.. +.+...|..+.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHHHH
Confidence 4456666777778888888888888777653 2356667777777778888888888888877764 23566777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+|...|++++|.+.|++.++..
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 88888888888888888877654
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=5.6e-07 Score=80.01 Aligned_cols=97 Identities=9% Similarity=-0.096 Sum_probs=49.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
...+..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|...++...+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444445555555555555555555554432 2244445555555555555555555555555442 2244455555555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 011905 244 ICRLGSMERALELLGEMEK 262 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~ 262 (475)
|...|++++|.+.|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555444
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=3e-06 Score=64.90 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|+++.|.+.+++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+...+.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3334444444444444444444433321 2233333344444444444444444444443332 1123334444444444
Q ss_pred cCChHHHHHHHHHHHh
Q 011905 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444433
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=1.5e-06 Score=71.09 Aligned_cols=121 Identities=7% Similarity=0.033 Sum_probs=69.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 011905 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE-LCLGGQV--LE 394 (475)
Q Consensus 318 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 394 (475)
..|++++|...++...+.... +...|..+...|...|++++|...|++..+.. ..+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345556666666665554322 34556666666666666666666666665432 1234455555555 5566666 66
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
|...++++.+.. +.+...+..+...+...|++++|.+.++++++..
T Consensus 100 A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 666666666653 2245566666666667777777777777766654
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.50 E-value=2.4e-06 Score=74.50 Aligned_cols=127 Identities=8% Similarity=-0.040 Sum_probs=67.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN--RVTISTLIKGF 316 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~ 316 (475)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG----SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 34455556666666666666555422 332244444445566666666666665333221 110 12445555566
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666666654322132 223444555666666677777766666654
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.48 E-value=1.3e-06 Score=69.33 Aligned_cols=97 Identities=15% Similarity=0.006 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.. |.+...|..+..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~lg~ 112 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHHHH
Confidence 344555555555666666666666555543 2245555555666666666666666666655532 233455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011905 280 IFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+|...|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666555553
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=7.9e-07 Score=79.03 Aligned_cols=96 Identities=13% Similarity=-0.026 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 3444445555555555555555555555442 1244455555555555555555555555555431 23344445555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011905 279 QIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~ 298 (475)
.+|...|++++|...|++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555444
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=1.4e-06 Score=71.36 Aligned_cols=120 Identities=7% Similarity=0.009 Sum_probs=66.3
Q ss_pred hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCCh--HH
Q 011905 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-ICRLGSM--ER 252 (475)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~--~~ 252 (475)
..|++++|...+++..... +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455666666666554433 3345556666666666666666666666665543 1245555555555 5566665 66
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
|...++++.+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666665532 234455555666666666666666666665554
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.46 E-value=4.4e-06 Score=76.30 Aligned_cols=146 Identities=11% Similarity=0.023 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011905 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349 (475)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 349 (475)
+...+..+...+.+.|++++|+..|++..+.. |+...+ ..+.+..+- .. ...+|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~~-------~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-AL-------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-HH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-HH-------HHHHHHHHHH
Confidence 45556666666777777777777776666542 111000 000000000 00 1345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011905 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (475)
+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777643 2345666777777777777777777777777754 23566777777777777777
Q ss_pred HHH-HHHHHHHH
Q 011905 430 VEA-AKLARFML 440 (475)
Q Consensus 430 ~~A-~~~~~~m~ 440 (475)
++| .++++.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777 34555554
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=1e-05 Score=60.63 Aligned_cols=110 Identities=10% Similarity=-0.078 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cccHHHHHHHHH
Confidence 446666677777777888877777776542 2255666677777777788888888888777764 235667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 8888888888888888877665 444444444433
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=4.2e-06 Score=76.41 Aligned_cols=124 Identities=6% Similarity=-0.188 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD--------------GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
..+..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|...+++..+..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3455555566666666666666666654321111 4678888899999999999999999999975
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhh
Q 011905 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
+.+...|..+..+|...|++++|++.|+++++.. +.+...+..+..++.+.|+.+++.+
T Consensus 227 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 227 --SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999987 6778889999999999999988843
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=0.00037 Score=62.47 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC-HHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM-MKEAL 291 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~ 291 (475)
+++++.+++.+.....+ +..+|+.-...+.+.| .+++++.+++.+.+.. +.|..+|+.-.-.+...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 34455555555544322 4444544444444444 2555555555555532 3455555554444445554 35555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH
Q 011905 292 GILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
+.++.+.+..+ -|...|+....
T Consensus 166 ~~~~~~I~~~p-~N~SAW~~R~~ 187 (331)
T 3dss_A 166 AFTDSLITRNF-SNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHHCS-CCHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCHHHHHHHHH
Confidence 55555555432 23444443333
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.40 E-value=2.1e-06 Score=67.94 Aligned_cols=92 Identities=14% Similarity=0.018 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.|++..... +.+...+..+..+|.
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Confidence 333344444444444444444444332 1133344444444444444444444444444321 122333344444444
Q ss_pred hcCCHHHHHHHHHHHH
Q 011905 283 GKGMMKEALGILDRME 298 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~ 298 (475)
..|++++|...|+...
T Consensus 101 ~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQ 116 (148)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444433
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=6.7e-06 Score=64.49 Aligned_cols=98 Identities=8% Similarity=-0.142 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHH
Confidence 344555666667777777777777776542 2245566666667777777777777777777654 235566667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 011905 422 GLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+|...|++++|.+.|++.++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777776654
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=0.00033 Score=62.77 Aligned_cols=197 Identities=10% Similarity=0.013 Sum_probs=143.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHH
Q 011905 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG--MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN-LDEAY 326 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~ 326 (475)
+++++.+++.+.... +-+..+|+.-.-.+...| ++++++++++.+.+.. +-|...|+.-.-++...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~---PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 678999999998853 567888888777777777 4899999999999875 3477788777777778888 68999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 011905 327 QLIDKVVAGGSVSSGGCYSSLVVELVRT--------------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--- 389 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--- 389 (475)
+.++.+++.++. |..+|+.....+... +.++++++.+.+..... +-|...|+-+-..+.+.
T Consensus 166 ~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 166 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCc
Confidence 999999987755 666777766666554 45788999999988753 33566666554444444
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 390 --------GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL-----CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 390 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
+.++++++.++++.+.. | .+ .|+.+..++ -..|..+++..++.++++.+ |.....|..+..
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~--p-d~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~ 317 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELE--P-EN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRS 317 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHC--T-TC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhC--c-cc--chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHH
Confidence 45788999999999864 3 23 344332222 24678889999999999887 666666666555
Q ss_pred HH
Q 011905 457 HL 458 (475)
Q Consensus 457 ~~ 458 (475)
.+
T Consensus 318 ~~ 319 (331)
T 3dss_A 318 KF 319 (331)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.5e-05 Score=62.61 Aligned_cols=112 Identities=7% Similarity=-0.160 Sum_probs=78.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|...+++..+.. +.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---GGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---ccCHHH
Confidence 3455666777777778888888888777754 455 4566667777778888888888888777753 235667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011905 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
|..+..++...|++++|.+.+++.++.. +.+...+..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 7777788888888888888888887765 4445555444443
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.38 E-value=7.5e-06 Score=63.53 Aligned_cols=99 Identities=9% Similarity=-0.082 Sum_probs=66.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHHHH
Confidence 44556666667777777777777777766542 2245666666667777777777777777777654 2356667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 011905 420 LLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
..++...|++++|.+.++++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777777777654
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=7.4e-06 Score=66.03 Aligned_cols=98 Identities=8% Similarity=-0.110 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011905 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 385 (475)
...+..+...+.+.|++++|...|++.++.... +...|..+..+|...|++++|+..|++.++.. .-+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334445555555555555555555555544322 34445555555555555555555555555432 1124445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 011905 386 LCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~ 405 (475)
+...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 55555555555555555543
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.2e-05 Score=61.44 Aligned_cols=98 Identities=10% Similarity=-0.109 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHH
Confidence 345666677777788888888887777643 2346677777777778888888888888777764 235677777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 011905 422 GLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++...|++++|.+.+++.++..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888777653
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=2.2e-05 Score=58.71 Aligned_cols=95 Identities=14% Similarity=-0.027 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444455555555555555555544332 2234444445555555555555555555554432 123444555555555
Q ss_pred hcCChHHHHHHHHHHHh
Q 011905 246 RLGSMERALELLGEMEK 262 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~ 262 (475)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555544
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=1.7e-05 Score=60.72 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hhhHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD----SDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ 418 (475)
++..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|++.+++..+.......+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 46667778888888888888888887653 2346677777788888888888888888877643111001 246777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011905 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+..++...|++++|++.|++.+.. .|++.+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 788888889999999999988875 3666665544
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=2.1e-05 Score=65.65 Aligned_cols=124 Identities=15% Similarity=0.016 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS---------------GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
...+..+...+...|++++|...|++.++...... ..+|..+..+|...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455556666667777777777777665432211 134555555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 011905 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 433 (475)
. ..+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2234445555555555555555555555555542 123444455544444444444444
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.29 E-value=9.5e-06 Score=63.61 Aligned_cols=87 Identities=15% Similarity=0.006 Sum_probs=34.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
..+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..... +.+...+..+..+|...|+
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHcCC
Confidence 33344444444444444443332 1133334444444444444444444444444321 1223333334444444444
Q ss_pred HHHHHHHHHHH
Q 011905 287 MKEALGILDRM 297 (475)
Q Consensus 287 ~~~a~~~~~~m 297 (475)
+++|...|+..
T Consensus 102 ~~~A~~~~~~a 112 (142)
T 2xcb_A 102 LDGAESGFYSA 112 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.3e-05 Score=58.90 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011905 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++..++.+.. +...|..+..++...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH
Confidence 333344444444444444444443331 113334444444444444444444444444433221 233344444444444
Q ss_pred CCHHHHHHHHHHHH
Q 011905 355 KRLKEAEKLFSKML 368 (475)
Q Consensus 355 g~~~~A~~~~~~m~ 368 (475)
|++++|...|++..
T Consensus 86 ~~~~~A~~~~~~al 99 (126)
T 3upv_A 86 KEYASALETLDAAR 99 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHH
Confidence 44444444444444
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=1.2e-05 Score=61.51 Aligned_cols=115 Identities=12% Similarity=-0.015 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hhhHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD----SDIHS 417 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 417 (475)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.......+ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666667777777777777777776543 2345666667777777777887777777776653110011 56677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
.+...+...|++++|.+.++++.+.. |+......+.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 77888888888888888888888764 45665555554443
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.27 E-value=1.4e-05 Score=59.23 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHHHH
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSVIQ 279 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~ 279 (475)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI---EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccchHHHHHHHHH
Confidence 3334444444444444444444444332 1133444444444444444444444444444421 12 3444444444
Q ss_pred HHHhc-CCHHHHHHHHHHHHH
Q 011905 280 IFCGK-GMMKEALGILDRMEA 299 (475)
Q Consensus 280 ~~~~~-g~~~~a~~~~~~m~~ 299 (475)
.+... |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 44444 444444444444443
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=1.7e-05 Score=58.72 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=61.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA--NLVAYSAL 240 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~l 240 (475)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34455566666666666666666666665543 3345556666666666666666666666666542 22 35566666
Q ss_pred HHHHHhc-CChHHHHHHHHHHHhc
Q 011905 241 LDGICRL-GSMERALELLGEMEKE 263 (475)
Q Consensus 241 l~~~~~~-g~~~~a~~~~~~~~~~ 263 (475)
...+.+. |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666676666666654
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=3.8e-05 Score=72.68 Aligned_cols=199 Identities=7% Similarity=-0.013 Sum_probs=109.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 011905 206 IKGFCNAGRLEDACGLFKVMKRHGCAANL----------------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 269 (475)
.+.+.+.|++++|++.|..+.+....... ..+..+...|.+.|++++|.+.+..+......+ +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF-A 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-C
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-c
Confidence 34556677888888887777765322111 135566777777777777777777665521111 1
Q ss_pred cHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-
Q 011905 270 NVV----TYTSVIQIFCGKGMMKEALGILDRMEA----LGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAG--GS- 337 (475)
Q Consensus 270 ~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~- 337 (475)
+.. +.+.+...+...|+.+++..+++.... .+..+. ..++..+...|...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 211 122222333345667777777666542 222222 345556666677777777777776665432 11
Q ss_pred -CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 338 -VS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVK-P-D--GLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 338 -~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.+ ...++..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...+.+..+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 1345666666677777777777776665431 111 1 1 133444445555666777776666666654
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=3.6e-05 Score=58.91 Aligned_cols=97 Identities=8% Similarity=0.048 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHHHH
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYTSV 277 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~l 277 (475)
+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|++.+++..+......++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444555555555555555544432 1234445555555555555555555555444321000000 1233344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011905 278 IQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~ 299 (475)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4444445555555555544443
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=2.9e-05 Score=64.68 Aligned_cols=156 Identities=11% Similarity=-0.062 Sum_probs=80.5
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------HH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN---------------RV 307 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---------------~~ 307 (475)
.....|+++++.+.++.-.... ......+..+...+...|++++|+..|++......... ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK---VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ---------CCCSGGGCCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3344455555555554322210 12344556666667777777777777777665421111 15
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 387 (475)
.+..+..+|.+.|++++|...++..++... .+...+..+..+|...|++++|.+.|++..+.. +-+...+..+...+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 666666677777777777777777766542 245566667777777777777777777766542 123445555555555
Q ss_pred hcCCHHHHH-HHHHHHH
Q 011905 388 LGGQVLEGF-CLYEDIE 403 (475)
Q Consensus 388 ~~g~~~~a~-~~~~~~~ 403 (475)
..++.+++. ..+..+.
T Consensus 168 ~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 555554444 3333333
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=0.00011 Score=69.37 Aligned_cols=199 Identities=9% Similarity=-0.051 Sum_probs=143.5
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcC
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDI----------------ITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAAN 233 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~ 233 (475)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999998775422111 236778999999999999999999876531 1122
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-
Q 011905 234 LV----AYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GCA- 303 (475)
Q Consensus 234 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~- 303 (475)
.. +.+.+-..+...|+++.|.+++....... .....-..++..+...|...|++++|..++++.... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 23333444556789999999999886521 111223567788999999999999999999987643 111
Q ss_pred -C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 304 -P-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 304 -p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
+ ....+..+++.|...|++++|..+++..... +..+. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2457888899999999999999999987642 21111 24566777778888999999999988764
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=2.3e-05 Score=63.02 Aligned_cols=99 Identities=12% Similarity=-0.010 Sum_probs=61.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+..+...+.+.|++++|++.|++..... +.+...|..+..++.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455666666666666666666666665543 3345566666666666666666666666666553 224566666666
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 011905 243 GICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~ 263 (475)
+|.+.|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666677666666666653
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.21 E-value=3.2e-05 Score=59.88 Aligned_cols=95 Identities=13% Similarity=-0.023 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
..+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~ 85 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHHHHHH
Confidence 334444444444444444444444443332 1133444444444444444444444444444421 223334444444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011905 280 IFCGKGMMKEALGILDRME 298 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~ 298 (475)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444433
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.19 E-value=5.6e-05 Score=57.71 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
..+...+...|++++|...|++..+.. |+. ..+..+..++...|++++|...++++.+.....+.....+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345556667777777777777776542 222 35555666677777777777777777765421100145566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.++...|++++|.+.++++++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777777777664
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=1.8e-05 Score=60.52 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC--AAN----LVAYSAL 240 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~~~l 240 (475)
+..+...+...|+++.|...|++..... +.+...+..+...+...|++++|...++...+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444444444455555555554444322 22334444444444444555555544444443211 011 3344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 011905 241 LDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...|.+.|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555444
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=6.7e-05 Score=58.74 Aligned_cols=97 Identities=9% Similarity=-0.056 Sum_probs=53.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...+..+...+...|++++|.+.|++..+. .|+ ...|..+...+...|++++|...++...+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4445555555666666666666666665543 233 3445555555555666666666665555442 22445555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 011905 239 ALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+..+|...|++++|.+.|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555556666666666666665555
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.15 E-value=2.2e-05 Score=62.58 Aligned_cols=100 Identities=13% Similarity=0.020 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCchh
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDSD 414 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~ 414 (475)
++..+...+...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+... .+.....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4555666666666666666666665432 1000 123455566667777777777777776654310 0111245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
++..+...+...|++++|.+.+++.++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5677777788888888888888877653
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=3.1e-05 Score=73.94 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--------------GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
....+..+...+.+.|++++|...|++.++...... ..+|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355677888889999999999999999887543321 467888888999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH-HHHHHHHc
Q 011905 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK-LARFMLKK 442 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~ 442 (475)
. ..+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.+++++|.+ +++.|..+
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 3357788888888999999999999999988864 2366788888888888888887764 55666544
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.12 E-value=2.5e-05 Score=62.76 Aligned_cols=101 Identities=14% Similarity=-0.020 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLAS--------G---------VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
+......+.+.|++++|+..|.+.++. . -..+...|..+..+|.+.|++++|...+++..+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444555555666666666666555432 0 01123456677777888888888888888888764
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011905 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 448 (475)
+.+...|..+..+|...|++++|.+.|++.+... |.+.
T Consensus 94 ---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-p~~~ 131 (162)
T 3rkv_A 94 ---ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH-PAAA 131 (162)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGH
T ss_pred ---CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CCCH
Confidence 2367778888888888888888888888888775 3344
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=6.3e-06 Score=62.17 Aligned_cols=87 Identities=10% Similarity=-0.005 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHH
Q 011905 354 TKRLKEAEKLFSKMLASGV-KP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431 (475)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 431 (475)
.|++++|+..|++.++.+. .| +...+..+...|...|++++|...+++..+.. +.+..++..+..++.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHHH
Confidence 4566666666666665421 12 23455556666666777777777777766654 2245666667777777777777
Q ss_pred HHHHHHHHHHcC
Q 011905 432 AAKLARFMLKKR 443 (475)
Q Consensus 432 A~~~~~~m~~~~ 443 (475)
|++.+++.+...
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 777777766654
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.10 E-value=3.4e-05 Score=58.47 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+.+.|++++|+..|++.++.. +-+...+..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 4556667778888888888888887652 2256677777777888888888888888888764 23667778888888
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011905 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
...|++++|++.+++.++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888877654
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=3.5e-05 Score=71.16 Aligned_cols=91 Identities=4% Similarity=-0.217 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011905 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|+++++.. +.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3566667777778888888888888887754 2366777788888888888888888888888776 55667777777
Q ss_pred HHHHhcCCHhHHhhc
Q 011905 456 EHLKKSGDEELITNL 470 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l 470 (475)
.++...++.+++.+.
T Consensus 349 ~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 349 KVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766543
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=1.9e-05 Score=75.82 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=39.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 395 (475)
+.+.|++++|.+.+++.++.... +..+|..+..+|.+.|++++|++.+++..+.. .-+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 33444555555555544443221 23444444444445555555555554444432 11233444444444444444444
Q ss_pred HHHHHHHHHc
Q 011905 396 FCLYEDIEKI 405 (475)
Q Consensus 396 ~~~~~~~~~~ 405 (475)
.+.+++..+.
T Consensus 94 ~~~~~~al~~ 103 (477)
T 1wao_1 94 LRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=3.8e-05 Score=58.17 Aligned_cols=89 Identities=9% Similarity=-0.098 Sum_probs=37.0
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
...+.+.|++++|...|++..... +.+...|..+..++...|++++|+..|++..+... -+...+..+..+|.+.|++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 333444444444444444443322 22333444444444444444444444444443321 1333444444444444444
Q ss_pred HHHHHHHHHHH
Q 011905 251 ERALELLGEME 261 (475)
Q Consensus 251 ~~a~~~~~~~~ 261 (475)
++|...+++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.04 E-value=4.3e-05 Score=60.80 Aligned_cols=96 Identities=17% Similarity=0.089 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-cCHH
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLY-PD----IITYVSMIKGFCNAGRLEDACGLFKVMKRHG----CA-ANLV 235 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~-~~~~ 235 (475)
++..+...+...|++++|.+.+++....... ++ ..++..+...+...|++++|...+++..+.. -. ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444455555555555555444321100 00 1234444444455555555555554433210 00 0123
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
.+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444455555555555555555443
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.99 E-value=0.00024 Score=54.04 Aligned_cols=91 Identities=11% Similarity=-0.024 Sum_probs=43.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHH
Q 011905 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDI---ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN---LVAYSALLDG 243 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~ 243 (475)
+...+...|++++|.+.|+++.... +.+. ..+..+..++...|++++|...|+...+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3344445555555555555544322 1111 24444445555555555555555555443211 1 3344445555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 011905 244 ICRLGSMERALELLGEMEK 262 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~ 262 (475)
+.+.|++++|.+.|+++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=8.4e-05 Score=70.90 Aligned_cols=151 Identities=15% Similarity=0.029 Sum_probs=112.1
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHH
Q 011905 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN--------------RVTISTLI 313 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li 313 (475)
+++++|.+.|+...... +.....|..+...+.+.|++++|+..|++..+...... ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~~---~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK---LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 34455555554433311 13456788889999999999999999999887532211 57888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQV 392 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 392 (475)
.+|.+.|++++|...+++.++.... +...|..+..+|...|++++|+..|++..+. .|+ ...+..+..++...++.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987643 6788999999999999999999999999965 453 45677777777788877
Q ss_pred HHHHH-HHHHHHH
Q 011905 393 LEGFC-LYEDIEK 404 (475)
Q Consensus 393 ~~a~~-~~~~~~~ 404 (475)
+++.+ .++.|..
T Consensus 402 ~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 402 NERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 76653 4444443
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.95 E-value=2.4e-05 Score=58.87 Aligned_cols=85 Identities=14% Similarity=-0.007 Sum_probs=43.1
Q ss_pred cCChhHHHHHHHHhccCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011905 177 KGDMIAADELMKGMGLID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..|++..+... -+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 355555555555555432 122334455555555555666666666655555432 24455555555566666666666
Q ss_pred HHHHHHHh
Q 011905 255 ELLGEMEK 262 (475)
Q Consensus 255 ~~~~~~~~ 262 (475)
..+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555554
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.92 E-value=3.9e-05 Score=73.55 Aligned_cols=124 Identities=7% Similarity=-0.032 Sum_probs=94.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011905 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
..+...+.+.|++++|++.+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.... +...|..+..+|...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 334456778899999999999998763 335788999999999999999999999999987643 577899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 011905 355 KRLKEAEKLFSKMLASGVKPD-GLACSVMIRE--LCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~--~~~~g~~~~a~~~~~~~ 402 (475)
|++++|.+.|++..+.. |+ ...+..+..+ +.+.|++++|.+.+++.
T Consensus 88 g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999998753 32 3344444444 77788888888887753
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.89 E-value=0.00077 Score=65.89 Aligned_cols=172 Identities=8% Similarity=-0.055 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--
Q 011905 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGN----------LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-- 355 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 355 (475)
++|++.++.+...+. -+...|+.--.++...|+ ++++.+.++.+.+.+.+ +..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 455555555555421 123333333333333334 67777777777765544 4555666666666667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc--------
Q 011905 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG-QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK-------- 426 (475)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 426 (475)
+++++++.++++.+... -+...|+.-...+.+.| ..+++.+.++++.+... .+...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---SNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC---CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC---CCccHHHHHHHHHHhhcccccccc
Confidence 56777777777776542 35566666555566666 77777777777776542 3667777666665542
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhH
Q 011905 427 ------NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466 (475)
Q Consensus 427 ------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (475)
+.++++++++++++... |-+...|......+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56789999999999887 7788888888888888877555
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.87 E-value=0.00014 Score=67.09 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
..+|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|++.|++..+.. +.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4455555666666666666666666665532 2345555556666666666666666666655542 12344445555
Q ss_pred HHHHhcCCHHHHH
Q 011905 314 KGFCVEGNLDEAY 326 (475)
Q Consensus 314 ~~~~~~~~~~~a~ 326 (475)
.++...++.+++.
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.87 E-value=0.00026 Score=55.61 Aligned_cols=96 Identities=9% Similarity=-0.037 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-------------GLACSVMIRELCLGGQVLEGFCLYEDIEKI----- 405 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----- 405 (475)
+......+.+.|++++|+..|++.++. .|+ ...|..+-.++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 444555566667777777777766653 222 226777777888888888888888888875
Q ss_pred CCCCCCchhhH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 406 GFLSSVDSDIH----SVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 406 ~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+. +.+...| .....++...|++++|++.|++.++.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 112 3467788 88899999999999999999998864
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.86 E-value=0.00011 Score=70.14 Aligned_cols=128 Identities=13% Similarity=0.014 Sum_probs=87.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 011905 315 GFCVEGNLDEAYQLIDKVVAG---GSVS----SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-----GV-KPD-GLACS 380 (475)
Q Consensus 315 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~~~ 380 (475)
.+...|++++|+.++++.++. -+.+ ...+++.|...|...|++++|..++++.++. |- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888887776542 1111 2456888888888888888888888776532 21 232 35677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 381 VMIRELCLGGQVLEGFCLYEDIEK-----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.|...|...|++++|+.++++..+ .|...+....+.+.+..++...+++++|..+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888887764 24332223445566677777888888888888888763
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=9.5e-05 Score=54.61 Aligned_cols=93 Identities=10% Similarity=-0.050 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------h
Q 011905 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ------G 448 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~ 448 (475)
+...+..+...+...|++++|...+++..+.. +.+...|..+..++.+.|++++|++.+++.++.. +.+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHH
Confidence 34456666667777788888888888777754 2356777777788888888888888888887665 333 5
Q ss_pred hhHHHHHHHHHhcCCHhHHhhcc
Q 011905 449 PYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
..+..+..++...|+.+.+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHH
Confidence 55666677777777666665443
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.83 E-value=0.00016 Score=69.06 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=41.7
Q ss_pred HHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHH
Q 011905 244 ICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----G-CAP-NRVTIST 311 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~ 311 (475)
+...|++++|+.++++..+. |...+....+++.+..+|...|++++|..++++..+. | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666555432 1111112344555555666666666666555544321 1 011 1233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~ 332 (475)
|...|...|++++|..++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 445555555555555544443
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.81 E-value=0.00033 Score=55.98 Aligned_cols=96 Identities=15% Similarity=0.018 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccC--------C---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLI--------D---------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
.+......+.+.|+++.|+..|.+.... . -+.+...|..+..++.+.|++++|+..++...+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555566666666555554432 0 0112234555555555566666666666555554
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
. +.+...|..+..+|...|++++|...|++...
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3 22455555555566666666666666665555
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.0012 Score=51.03 Aligned_cols=110 Identities=14% Similarity=0.019 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGF 396 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 396 (475)
++++|.+.|++..+.|.. + .. |...|...+.+++|++.|++..+.| +...+..|-..|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 455666666666665522 1 12 4445555556666666666666553 34455555555555 56777777
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 011905 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 443 (475)
+.|++..+.| +...+..+...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN-----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777776654 44556666666666 667777777777777665
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.72 E-value=8.4e-05 Score=67.78 Aligned_cols=131 Identities=17% Similarity=0.044 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------------------hHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG------------------CYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
...+..+...+.+.|++++|...|++.+... |+.. +|..+..+|.+.|++++|+..+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556677777888899999999999887754 3222 4555555566666666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 011905 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG-LCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 442 (475)
++.. ..+...+..+..+|...|++++|...|+++.+.. | .+...+..+... ....+..+++.++|++|...
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p-~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--P-DDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 5432 1234555555556666666666666666555432 1 133344444333 22334455555555555543
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.71 E-value=0.0011 Score=51.38 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=5.9
Q ss_pred CChHHHHHHHHHHHh
Q 011905 248 GSMERALELLGEMEK 262 (475)
Q Consensus 248 g~~~~a~~~~~~~~~ 262 (475)
+++++|.+.|++..+
T Consensus 75 ~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 75 KDLRKAAQYYSKACG 89 (138)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHc
Confidence 334444444443333
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00056 Score=48.14 Aligned_cols=81 Identities=11% Similarity=-0.009 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
..+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.+++.+... +.+...+..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445555556666677777777777666653 1245666667777777777777777777777665 445555665555
Q ss_pred HHHhc
Q 011905 457 HLKKS 461 (475)
Q Consensus 457 ~~~~~ 461 (475)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55543
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.69 E-value=0.0009 Score=52.54 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKE-------GGDCSPNVVTY----TSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.|..+..++.+.|++++|+..+++..+. . +-+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~---pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN---QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT---STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC---CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666777777777777777666653 2 2344455 6666666666777777766666543
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.68 E-value=0.00022 Score=65.03 Aligned_cols=95 Identities=13% Similarity=-0.038 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRE- 385 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~- 385 (475)
.|..+..+|.+.|++++|...++..++.+.. +...|..+..+|...|++++|...|++..+. .|+. ..+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 4455555555666666666666655554321 3455555666666666666666666655532 3332 222222222
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 011905 386 LCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~ 405 (475)
....+..+.+...|+.+...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 12234455555556555543
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.66 E-value=0.0026 Score=62.16 Aligned_cols=174 Identities=6% Similarity=-0.042 Sum_probs=118.3
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCC----------HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh
Q 011905 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL----------ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 176 (475)
....++|++.++.+...+ +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-.-++.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344567777777777765 4455666655555555555 788888888887755 3467778777777777
Q ss_pred cC--ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc------
Q 011905 177 KG--DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL------ 247 (475)
Q Consensus 177 ~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~------ 247 (475)
.| +++++++.++++.+.. +-+...|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 77 6688888888887765 456777777766677777 778888888887776533 666776666555542
Q ss_pred --------CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011905 248 --------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 248 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
+.++++++.+++..... +-+...|+-.-..+.+.++.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~---P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC---SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHhcCCCc
Confidence 45677888887777643 44666777666666666553
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.50 E-value=0.0012 Score=48.99 Aligned_cols=79 Identities=14% Similarity=-0.035 Sum_probs=45.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 360 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..+|...|++++|.+.|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555432 1234555555556666666666666666666543 124555666666666666666666666666
Q ss_pred HHc
Q 011905 440 LKK 442 (475)
Q Consensus 440 ~~~ 442 (475)
+..
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.39 E-value=0.00062 Score=53.35 Aligned_cols=102 Identities=12% Similarity=-0.034 Sum_probs=61.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ----------VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
+.+++++|.+.+++..+.. +-+...|..+-.++...++ +++|+..|++..+.. +.+..+|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---P~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC---cCcHHHHHHHHHH
Confidence 4445566666666665542 2244555555555555444 447777777777754 2356677777777
Q ss_pred HHhcC-----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011905 423 LCRKN-----------HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 423 ~~~~g-----------~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 460 (475)
|...| ++++|++.|+++++.. |+...|...+....+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHT
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHh
Confidence 76653 7888888888887775 555555555544433
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00058 Score=50.21 Aligned_cols=59 Identities=8% Similarity=-0.004 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 226 (475)
+..+...+...|++++|.+.|++..... +.+...+..+..++...|++++|+..+++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3334444444444444444444433322 2233333334444444444444444444443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.38 E-value=0.0014 Score=48.60 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444444432 1133344444444444444444444444443
No 205
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.36 E-value=0.023 Score=58.38 Aligned_cols=194 Identities=15% Similarity=0.054 Sum_probs=100.2
Q ss_pred HHHhcCCHHHHHH-HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011905 208 GFCNAGRLEDACG-LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 208 ~~~~~~~~~~a~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
.....+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+.-.. -.......|+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------------~f~~~l~~~~ 667 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ--------------KFELALKVGQ 667 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH--------------HHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcch--------------heehhhhcCC
Confidence 3345666776655 43111 1122225666666777777777655421111 1223345677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (475)
+++|+++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...|...|+.+...++.+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 77777665432 2456677777777777777777776665532 44455555555555544443333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011905 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446 (475)
Q Consensus 367 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 446 (475)
.. ..|+++.|...+-.. | -+...++.|.+.+++++|..+-+. . .|
T Consensus 733 a~-------------------~~~~~~~A~~~~~~~---g--------~~~~a~~~~~~~~~~~~A~~lA~~---~--~~ 777 (814)
T 3mkq_A 733 AE-------------------TTGKFNLAFNAYWIA---G--------DIQGAKDLLIKSQRFSEAAFLGST---Y--GL 777 (814)
T ss_dssp HH-------------------HTTCHHHHHHHHHHH---T--------CHHHHHHHHHHTTCHHHHHHHHHH---T--TC
T ss_pred HH-------------------HcCchHHHHHHHHHc---C--------CHHHHHHHHHHcCChHHHHHHHHH---h--CC
Confidence 32 233333333332211 1 023334445556666666665443 2 34
Q ss_pred Ch----hhHHHHHHHHHhcCCHhHHhhcc
Q 011905 447 QG----PYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 447 ~~----~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.. .........+...|+.+.|..+.
T Consensus 778 ~~~~i~~~~~~~~~~L~~~~~~~~a~~l~ 806 (814)
T 3mkq_A 778 GDNEVNDIVTKWKENLILNGKNTVSERVC 806 (814)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHTTBC
T ss_pred ChHHHHHHHHHHHHHHHhccchhHHHhhC
Confidence 44 55566666677777766666554
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.35 E-value=0.0057 Score=62.87 Aligned_cols=124 Identities=14% Similarity=0.063 Sum_probs=68.8
Q ss_pred HHHhcCCHHHHHH-HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 138 LCEKARLANEAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 138 ~~~~~~~~~~A~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
.....+++++|.+ ++..+. +......++..+.+.|..+.|+++.++- . .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCHH
Confidence 3345677777766 443322 1222366666677777777777654211 0 1123345567777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.. |..+...+...|+.+...++-+.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 777665432 2566777777777777777777777776543 23344444445555544444333
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.34 E-value=0.0018 Score=45.37 Aligned_cols=60 Identities=13% Similarity=0.254 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444444444444444444444332 11334444444444445555555555544444
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.28 E-value=0.0015 Score=47.15 Aligned_cols=85 Identities=9% Similarity=-0.040 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHH
Q 011905 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDK 453 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ 453 (475)
+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|.+.+++.++... .++......
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 34555566666666677777777777666654 12455666677777777777777777766665421 244444444
Q ss_pred HHHHHHhcC
Q 011905 454 IVEHLKKSG 462 (475)
Q Consensus 454 l~~~~~~~g 462 (475)
+...+.+.+
T Consensus 83 l~~~l~~~~ 91 (100)
T 3ma5_A 83 LQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcc
Confidence 444444433
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.11 E-value=0.00089 Score=52.45 Aligned_cols=85 Identities=11% Similarity=-0.046 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh----------HHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011905 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI----------AADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 142 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~----------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 211 (475)
.+.+++|.+.++...+.. +.+...|+.+..++...++++ +|+..|++..+.+ +.+...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 344556666666555543 235555555555555555433 5555555554432 2234445555555544
Q ss_pred cC-----------CHHHHHHHHHHHHHC
Q 011905 212 AG-----------RLEDACGLFKVMKRH 228 (475)
Q Consensus 212 ~~-----------~~~~a~~~~~~m~~~ 228 (475)
.| ++++|++.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 32 455555555554443
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.08 E-value=0.0022 Score=46.31 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=31.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 226 (475)
+...+..+..++...|++++|++.|++..+.. +.+...|..+..++...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555555554432 2233444555555555555555555555443
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.89 E-value=0.003 Score=59.24 Aligned_cols=88 Identities=8% Similarity=-0.164 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCchhhHHHHHH
Q 011905 354 TKRLKEAEKLFSKMLAS---GVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKI-----GFLSSVDSDIHSVLLL 421 (475)
Q Consensus 354 ~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~ 421 (475)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+. |...+.-..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776541 11222 356777778888888888888888876642 3332234566888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 011905 422 GLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~ 441 (475)
.|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888888775
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.85 E-value=0.0049 Score=57.81 Aligned_cols=94 Identities=10% Similarity=-0.078 Sum_probs=66.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCchhh
Q 011905 348 VVELVRTKRLKEAEKLFSKMLASG---VKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKI-----GFLSSVDSDI 415 (475)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~---~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 415 (475)
+..+.+.|++++|+.++++.++.. +.|+ ..+++.|..+|...|++++|+.++++..+. |...+.-..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888888776531 1222 356777888888888888888888877642 3322234566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 416 HSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888889999999999998888774
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.67 E-value=0.0076 Score=56.46 Aligned_cols=61 Identities=10% Similarity=-0.082 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 272 VTYTSVIQIFCGKGMMKEALGILDRMEAL-----G-CAPN-RVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 332 (475)
.+++.+..+|...|++++|+.++++..+. | -.|+ ..+++.|...|...|++++|..++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34444444444444444444444443211 1 0111 233444555555555555555555444
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.66 E-value=0.019 Score=40.82 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=28.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 349 VELVRTKRLKEAEKLFSKMLASGVKPDGL-ACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
..+...|++++|...|++..+.. ..+.. .+..+..++...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555555555432 11233 4444555555555555555555555554
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.64 E-value=0.058 Score=48.64 Aligned_cols=74 Identities=11% Similarity=-0.098 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
..+...+..+...+...|++++|...++++...+ | +...|..+...+.-.|++++|.+.++++...+ |...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~--s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--M--SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHH
Confidence 4456667666666666688888888888888775 3 55566666777777888888888888877775 4545543
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.63 E-value=0.13 Score=38.36 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
.+..+..+...|+-+.-.+++..+.. +.+|++...-.+..||.+.|+..+|.+++.++-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44444555555555555555555432 2244555555555555555555555555555555553
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.60 E-value=0.053 Score=48.87 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011905 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 378 (475)
+..+|..+...+...|++++|...+++.+..+ |+...|..+...+.-.|++++|.+.|++.... .|...+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 44455554444444555555555555555544 34444444455555555555555555555533 344444
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.54 E-value=0.013 Score=54.84 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 272 VTYTSVIQIFCGKGMMKEALGILDRMEAL-----G-CAP-NRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 332 (475)
.+++.+..+|...|++++|+.++++.... | ..| ...+++.|...|...|++++|..++++.
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444444444444444444444443211 1 111 1233444555555555555555555444
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.48 E-value=0.045 Score=38.61 Aligned_cols=67 Identities=12% Similarity=-0.037 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 374 PDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|...+..+..++...++ .++|..++++..+.. +.+......+...+.+.|++++|+..|+++++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345556666666544433 678888888888765 3467777777788888888888888888888775
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.25 Score=39.20 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=58.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011905 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
+....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34455566666666666554 2455677777777777777777777666543 33444445555666
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011905 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
++..++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55555544444433 1233344444556666666666443
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.18 E-value=0.26 Score=36.83 Aligned_cols=139 Identities=9% Similarity=0.111 Sum_probs=78.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
-.|..++..++..+..+. .+..-||.+|.-....-+-+...++++.+-+- -|.. ..|+....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-----FDis----------~C~NlKrV 80 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-----FDLD----------KCQNLKSV 80 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-----SCGG----------GCSCTHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-----cCcH----------hhhcHHHH
Confidence 456677777777766654 25556666666666666666666666665542 1211 12222222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 291 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
..-+-.+- -+...+...+..+...|+-|.-.+++.++.. +..|++.....+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 22222111 1334455556666677777777777776544 33445566666777777777777777777777666
Q ss_pred CCC
Q 011905 371 GVK 373 (475)
Q Consensus 371 ~~~ 373 (475)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 653
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.36 Score=38.34 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
...|..|.....+.|+++-|++.|.+.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444444444444444433
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.15 E-value=0.055 Score=41.84 Aligned_cols=85 Identities=22% Similarity=0.174 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 011905 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 433 (475)
...+.+-|.+..+.|. ++..+...+..++++.+ +.+++..+++++.+.. .|..+...+..+..++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455556665555553 56666666666777766 5567777777777754 12123556666677777888888888
Q ss_pred HHHHHHHHcC
Q 011905 434 KLARFMLKKR 443 (475)
Q Consensus 434 ~~~~~m~~~~ 443 (475)
++++.+++..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8888887775
No 224
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.14 E-value=0.021 Score=40.61 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 209 FCNAGRLEDACGLFKVMKRHGCAANLV-AYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+...|++++|...++...+.. +.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444332 11233 344444444444444444444444443
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.91 E-value=0.16 Score=35.69 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
++|..++++..+... -++.....+...+.+.|++++|...|+++.+
T Consensus 26 ~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444321 1333344444444444444444444444444
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.52 E-value=0.2 Score=36.03 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..++..+..++.+.|++++|..+++++++..
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3445555555555555555555555555443
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.49 E-value=0.11 Score=40.07 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEG---NLDEAYQLIDKVVAGGSVS--SGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~ 363 (475)
.+.+-|.+..+.|. ++..+...+.-++++.+ +++++..++++..+.+ .| +...+..+.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444443 45556556666666666 4556777777766654 12 234455556666777777777777
Q ss_pred HHHHHHCCCCCC
Q 011905 364 FSKMLASGVKPD 375 (475)
Q Consensus 364 ~~~m~~~~~~p~ 375 (475)
++.+++. .|+
T Consensus 94 ~~~lL~i--eP~ 103 (152)
T 1pc2_A 94 VRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHH--CTT
T ss_pred HHHHHhc--CCC
Confidence 7777754 554
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.00 E-value=0.3 Score=35.05 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...+..+..+|.+.|+++.|...++++.+
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444455555555555555555555444
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.88 E-value=5.2e-05 Score=69.67 Aligned_cols=117 Identities=11% Similarity=0.050 Sum_probs=61.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHH
Q 011905 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208 (475)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 208 (475)
+..|..|..+..+.+++.+|++-|- +. -|+..|..++.+..+.|.+++-.+++...++.. .+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 3455556666665555555544331 11 245556666666666666666666665554432 222333456666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011905 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 666666544332221 244444455566666666666666555544
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.76 E-value=0.39 Score=41.57 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc-C
Q 011905 357 LKEAEKLFSKMLASGVKPD---GLACSVMIRELCL-----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK-N 427 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 427 (475)
...|...+++.++. .|+ ...|..+...|.. .|+.++|.+.|++..+.+. ..+..++....+.+++. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcC
Confidence 34455555555543 344 3455555555555 3677777777777666532 11355566666666663 6
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 011905 428 HSVEAAKLARFMLKKRIW 445 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~~~ 445 (475)
+.++|.+.+++.+.....
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 677777777777666544
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.50 E-value=0.74 Score=35.23 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=72.7
Q ss_pred ChhhHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHHHHcC
Q 011905 340 SGGCYSSLVVELVRTKRL------KEAEKLFSKMLASGVKPDG----LACSVMIR---ELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~----~~~~~li~---~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
|..+|-..+....+.|++ ++..++|++.... ++|+. ..|-.|.- .+...+++++|+++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 344555555555555666 6666677766553 33432 11111111 1123478999999999998763
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
+ . =...|-.....-.+.|+.+.|.+++...+..+ +.+...++..++-+.
T Consensus 91 -K-k-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 91 -K-K-FAFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALRNLN 139 (161)
T ss_dssp -T-T-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHHHHH
T ss_pred -H-H-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHHhhh
Confidence 2 1 26667777777778999999999999999887 556667776666554
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.27 E-value=0.48 Score=35.16 Aligned_cols=89 Identities=21% Similarity=0.133 Sum_probs=55.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE---GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (475)
.......+.+-|.+....|. |+..+-..+..++.+..+... ++.+++++.+.+ .|.........+..++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 33344555555655554442 666666666666776665554 777777776653 1112445555666777788888
Q ss_pred HHHHHHHHHHHHcC
Q 011905 430 VEAAKLARFMLKKR 443 (475)
Q Consensus 430 ~~A~~~~~~m~~~~ 443 (475)
++|.++++.+++..
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887775
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.08 E-value=3.9 Score=38.29 Aligned_cols=190 Identities=13% Similarity=0.134 Sum_probs=98.9
Q ss_pred CChhHHHHHHHHhcc-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHH----Hhc
Q 011905 178 GDMIAADELMKGMGL-----IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAANLVAYSALLDGI----CRL 247 (475)
Q Consensus 178 g~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~----~~~ 247 (475)
|+++.|++.+..+.+ .+..........++..|...|+++...+.+..+.+. |..+. ....++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 677777777655532 223344556777888888888888887777666543 32222 223333322 222
Q ss_pred CChHHHH--HHHHHHHhc-CCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 011905 248 GSMERAL--ELLGEMEKE-GGDCSP---NVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GCAPN---RVTISTLIKGF 316 (475)
Q Consensus 248 g~~~~a~--~~~~~~~~~-~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~ 316 (475)
...+... .+.+..... ...+-. .......|...+...|++.+|.+++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222211 111111110 000001 1122344566677777777777777776532 21111 23455566677
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 317 CVEGNLDEAYQLIDKVVA----GGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
...+++..|..+++.+.. ....|+ ...|...+..+...+++.+|.+.|.+..+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777777777777766532 122222 23455566666667777777766666543
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.96 E-value=1.1 Score=34.37 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=46.0
Q ss_pred CHhhHHHHHHHHHhcCCh------hHHHHHHHHhccCCCCCChh-hHHHHHHHH------HhcCCHHHHHHHHHHHHHCC
Q 011905 163 DTIIYNNVIRLFCEKGDM------IAADELMKGMGLIDLYPDII-TYVSMIKGF------CNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~~~~~~~~-~~~~li~~~------~~~~~~~~a~~~~~~m~~~g 229 (475)
|..+|-..+...-+.|+. ++..++|++... .++|+.. .|...+..+ ...+|.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555555 555555555544 2233321 111111111 12255555666666554432
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 230 CAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
-.- ...|......-.+.|++..|.+++.....
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 222 44444444555556666666666665555
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.90 E-value=2.1 Score=39.28 Aligned_cols=69 Identities=9% Similarity=-0.074 Sum_probs=36.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVDK 453 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~ 453 (475)
++.++...|+.+++...++.+.... +.+...|..++.++.+.|+..+|++.|+.+.+ .|+.|++.+-..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4444555556666655555555443 23455556666666666666666655555432 255555554443
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.82 E-value=4.2 Score=38.04 Aligned_cols=246 Identities=12% Similarity=0.048 Sum_probs=134.5
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----H
Q 011905 212 AGRLEDACGLFKVMKRH-----GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----C 282 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~-----g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~ 282 (475)
.|++++|++.+..+.+. ...........++..|...|+++...+.+..+... .+..+... ..++..+ .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk-r~qlk~ai--~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK-HGQLKLSI--QYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT-TTTSHHHH--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hhhhHHHH--HHHHHHHHHHHh
Confidence 36788888877666542 23445677888999999999999988888777654 23333322 2333322 2
Q ss_pred hcCCHHHHH--HHHHHHHH--cC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHH
Q 011905 283 GKGMMKEAL--GILDRMEA--LG-CAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG--GSVSS---GGCYSSLVV 349 (475)
Q Consensus 283 ~~g~~~~a~--~~~~~m~~--~~-~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~ 349 (475)
.....+... .+.+.... .| +-. .......|...+...|++.+|.+++.++... +.... ...+...++
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222222211 11111110 01 111 1122356677788888888888888887642 22211 245667777
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhH----HHH
Q 011905 350 ELVRTKRLKEAEKLFSKMLA----SGVKPDG--LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH----SVL 419 (475)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~----~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~~l 419 (475)
.|...+++..|..++++... ....|+. ..+...+..+...+++.+|.+.|.++.+..... .+...+ ..+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~-~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK-SDEAKWKPVLSHI 264 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc-CCHHHHHHHHHHH
Confidence 88888888888888877642 2222221 344555666677788888877777776532110 122222 222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011905 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
+.+..-.+....-..++........-++...+..+..+|...
T Consensus 265 v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 265 VYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhc
Confidence 222233344444444444444443334455666667666543
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.37 E-value=1 Score=38.92 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCC--cHHHHHHHHHHHHhc-
Q 011905 216 EDACGLFKVMKRHGCAAN---LVAYSALLDGICRL-----GSMERALELLGEMEKEGGDCSP--NVVTYTSVIQIFCGK- 284 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~- 284 (475)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+ | +..++......++..
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln----P~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC----SAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC----CTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC----CCCCchHHHHHHHHHHHhc
Confidence 3444444444443 233 33455555555552 55555555555555422 2 133444444444442
Q ss_pred CCHHHHHHHHHHHHHcC
Q 011905 285 GMMKEALGILDRMEALG 301 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~ 301 (475)
|+.+++.+.+++.....
T Consensus 254 gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 254 NNRAGFDEALDRALAID 270 (301)
T ss_dssp TCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHcCC
Confidence 55555555555555443
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.22 E-value=0.00046 Score=63.63 Aligned_cols=186 Identities=10% Similarity=-0.001 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011905 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 172 (475)
++..|..++....+.+.++..+..+...++..-.|. .=+.|+-+|++.++..+-.++ .. .||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~~rL~elEef----l~---~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTSCSSSTTTST----TS---CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhhCcHHHHHHH----Hc---CCCcccHHHHHH
Confidence 455677888899999999999998887776544443 344688899999886554332 22 367666777888
Q ss_pred HHHhcCChhHHHHHHHHhccCC--------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011905 173 LFCEKGDMIAADELMKGMGLID--------------------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~--------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 232 (475)
-|...|.++.|.-+|..+.... -..+..||..+-.+|...+++.-|.-.--.++-.
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---- 228 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---- 228 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC----
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc----
Confidence 8888888888877776653321 0235667777777777777766554433333321
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
..-...++..|-+.|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+-++.
T Consensus 229 -adeL~elv~~YE~~G~f~ELIsLlEaglglE---rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 229 -ADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp -SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST---TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 1122345666777788888887777766422 35666777777666664 44544444433
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.18 E-value=0.65 Score=34.47 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE---AYQLIDKVVAGGSV-SSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (475)
+.+-|......|. ++..+-..+.-++.+...... +..+++++.+.+.+ -.......|.-++.+.|++++|.+.++
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334433333332 444554455555555554443 66666665554311 122333444555666666666666666
Q ss_pred HHHHC
Q 011905 366 KMLAS 370 (475)
Q Consensus 366 ~m~~~ 370 (475)
.+++.
T Consensus 99 ~lL~~ 103 (126)
T 1nzn_A 99 GLLQT 103 (126)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66644
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.85 Score=45.57 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=76.5
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHhccCCCCCChhhH--HHHHHHHHhcCC-HHHHHHHHHHHHHC------CCC-cCH---
Q 011905 169 NVIRLFCEKGD-MIAADELMKGMGLIDLYPDIITY--VSMIKGFCNAGR-LEDACGLFKVMKRH------GCA-ANL--- 234 (475)
Q Consensus 169 ~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~-~~~a~~~~~~m~~~------g~~-~~~--- 234 (475)
.++..+...++ .+.|..+|+++.... |...++ ..++..+...++ --+|.+++.+..+. ... .+.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444444555 577899999887653 433332 233333333332 22455555444321 111 111
Q ss_pred -------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 235 -------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 235 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.....-.+.+...|+++.|+++-++..... |.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223455667899999999999988742 4568899999999999999999999988773
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.69 E-value=3.4 Score=44.04 Aligned_cols=149 Identities=11% Similarity=0.083 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------------
Q 011905 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC----------------- 230 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----------------- 230 (475)
..++..+.+.+..+.+.++..-.. .+....-.+..++...|++++|.+.|++... |+
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 345556666677666666544332 2233333455666677777777777755321 11
Q ss_pred ------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 231 ------AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN--VVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302 (475)
Q Consensus 231 ------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 302 (475)
..-..-|..++..+.+.|.++.+.++-....+....-.++ ...|..+...+...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 1112346778888889999999988887766532111222 22578888999999999999999888876544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH
Q 011905 303 APNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~~~~~~ 324 (475)
+ ...+..|+...|..|..+.
T Consensus 970 r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHH
T ss_pred H--HHHHHHHHHHHHhCCChhh
Confidence 3 3456677777776665543
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.45 E-value=0.99 Score=31.67 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=54.8
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011905 101 CEMSRIKQ-NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 101 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 173 (475)
...+.+.. +.-++.+-++.+....+.|++....+.+++|.+.+++..|+.+|+.++..- .....+|..+++-
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 33444444 566777888888888899999999999999999999999999999887542 2345567777653
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.17 E-value=2.3 Score=45.35 Aligned_cols=185 Identities=8% Similarity=-0.003 Sum_probs=116.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---------------
Q 011905 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GS--------------- 337 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--------------- 337 (475)
++..+...+..+-+.++..- ++.+...--.+..+|...|++++|.+.|.+.... +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445556666555544332 2224444455667788899999999999764211 00
Q ss_pred ---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 338 ---VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410 (475)
Q Consensus 338 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 410 (475)
..-..-|..++..+.+.+.++.+.++-...++..-.-+. ..|..+..++...|++++|...+-.+.....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--- 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--- 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS---
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH---
Confidence 001134777888888999999999888877653212121 2577888889999999999888887776543
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHH------------HHHHHH-Hc-CCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 411 VDSDIHSVLLLGLCRKNHSVEAAK------------LARFML-KK-RIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 411 ~~~~~~~~li~~~~~~g~~~~A~~------------~~~~m~-~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
-......+|..+|..|..+.-.. ++..-. .. .+...+..|..|..-....|++..|-.+
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence 45678888888887776655432 222211 11 2233446778888888888877666443
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.18 E-value=1.2 Score=40.86 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA-----LGCAPNRVT 308 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 308 (475)
+...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+.... .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34456677778888888888888777643 45777888888888888888888888877643 477777654
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.90 E-value=3.2 Score=41.53 Aligned_cols=51 Identities=12% Similarity=-0.064 Sum_probs=31.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
|...|+++.|+++-++....- +.+-.+|..|..+|...|+++.|+-.++-+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445566666666666666542 235666666666666666666666655544
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.58 E-value=14 Score=36.22 Aligned_cols=252 Identities=10% Similarity=0.001 Sum_probs=119.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 011905 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 212 (475)
+.-+..+.+.+++...+.++.. . +.+...-.....+....|+...|......+-..| ......+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 4455667777777777765543 1 3455555556677777888777777776665544 44556667777777765
Q ss_pred CCHH--HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH--------------
Q 011905 213 GRLE--DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS-------------- 276 (475)
Q Consensus 213 ~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------------- 276 (475)
|.+. ...+=++.+...| +...-..++..+ . .......+.+..+... +++......
T Consensus 150 g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~ 220 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN----PNTVLTFARTTGATDFTRQMAAV 220 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC----GGGHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC----hHhHHHHHhccCCChhhHHHHHH
Confidence 5533 2333333333433 222222222211 1 1111111222233331 122221110
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011905 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF----CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (475)
.+.-+.+ .+.+.|...+....... ..+......+-... ...+...++...+........ +.....-.+....
T Consensus 221 ~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Al 296 (618)
T 1qsa_A 221 AFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMAL 296 (618)
T ss_dssp HHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHH
Confidence 1111222 35666776666665432 12222222222222 222323445555555443322 2222223333344
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+.|+++.|...|+.|..... ....-.--+.+++...|+.++|..+|+.+..
T Consensus 297 r~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 56777777777776654211 1223233344555666777777777777654
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.39 E-value=1.8 Score=32.25 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=55.1
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011905 101 CEMSRIKQ-NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 101 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 173 (475)
...+.+.. |.-+..+-++.+....+.|++....+.+.+|.+.+++..|+.+|+-++.+- .+....|..+++-
T Consensus 59 ~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 59 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 33444444 556677788888888999999999999999999999999999999887642 3445567777653
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.96 E-value=3.2 Score=29.17 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555566666666666666666666666666666666654
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.91 E-value=19 Score=36.93 Aligned_cols=258 Identities=14% Similarity=0.070 Sum_probs=139.7
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CcCHHHHHHHHHH
Q 011905 173 LFCEKGDMIAADELMKGMGLIDLYPDIIT--YVSMIKGFCNAGRLEDACGLFKVMKRHGC-------AANLVAYSALLDG 243 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------~~~~~~~~~ll~~ 243 (475)
+....|+.++++.+++.....+-..+..+ =..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45677888888888877664210122222 22333445566666677777776655321 0112222333333
Q ss_pred HHhcCC-hHHHHHHHHHHHhcCCCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHh
Q 011905 244 ICRLGS-MERALELLGEMEKEGGDCSPNVVTYT--SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK--GFCV 318 (475)
Q Consensus 244 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~ 318 (475)
++-.|. -+++.+.+..+.... .+...... .+...++-.|+.+....++..+.+.. +......+.- ++..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333342 245666666666531 11111122 22333456678777778887776542 3333333333 3446
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 319 EGNLDEAYQLIDKVVAGGSVSSGGC--YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 319 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
.|+.+.+..+++.+.... .|.... -.++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 788888888888887642 232221 2234456778889877777888887642 223333333333455567777777
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 011905 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS-VEAAKLARFMLK 441 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 441 (475)
++++.+.+.+ ++....-..+..+....|.. .+|+.++..+..
T Consensus 615 rlv~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7777666644 22344334444444445544 567777777764
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.45 E-value=21 Score=36.68 Aligned_cols=313 Identities=9% Similarity=-0.002 Sum_probs=168.7
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHhccCCC--C-----CChhhHHHHHHHH
Q 011905 139 CEKARLANEAMWVLRKMPEFDLRPD--TIIYNNVIRLFCEKGDMIAADELMKGMGLIDL--Y-----PDIITYVSMIKGF 209 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~-----~~~~~~~~li~~~ 209 (475)
..-.|+.++++.+++.....+-..+ ...-..+.-+.+..|..+++.+++.......- . +....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4455677778888877654210122 22333344456667766678887776554210 0 1111112222233
Q ss_pred H--hcCCHHHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011905 210 C--NAGRLEDACGLFKVMKRHGCAANLVAYS--ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 210 ~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
+ -.++ +++.+.+..+....- +...... .|...+.-.|+-+....++..+.+.. ..+..-...+.-++...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 3 3344 456666666655321 1111122 23344556788888888888776631 122222333344555789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 286 MMKEALGILDRMEALGCAPNRVTIS---TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 362 (475)
+.+.+..+++.+.... .|.. -|. .+.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 9999999988887642 2222 232 33346778899888888998888653 2234434444445556777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH--hcC-------CHHHH
Q 011905 363 LFSKMLASGVKPDGLACSVMIRELCLGGQV-LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC--RKN-------HSVEA 432 (475)
Q Consensus 363 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g-------~~~~A 432 (475)
++..+.+.+ .|..+.-..+.-+....|.. .++...+..+... ++..+-...+.+++ -.| +....
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D-----~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~ 689 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD-----PVDFVRQAAMIALSMILIQQTEKLNPQVADI 689 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC-----CCHHHHHHHHHHHHHHhcCCccccchHHHHH
Confidence 777666543 45555444555555555544 5677788888653 24344433333433 333 23333
Q ss_pred HHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHh
Q 011905 433 AKLARFMLKK-RIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 433 ~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
++.+...... .-.++...-..+..+....|.-.
T Consensus 690 l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 690 NKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 4434444433 22344555667777777776543
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.20 E-value=6.6 Score=29.30 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 371 GVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+-.|+..+--.+..++.+..+ ..+++.+++++.+.+ |......+-.+..++.+.|++++|.++.+.+++..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 335666665556666666654 456788888888765 22346667777788888999999999988888775
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.29 E-value=14 Score=33.80 Aligned_cols=168 Identities=8% Similarity=-0.067 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP---NVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
......|...|.+.|+.++..+++.....- .+..+ .......++..+... +..+.-.++..+..+..- -...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~f 96 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPF-LSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTG-GGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456677888999999999999988877542 11112 223355667776654 344555555555543311 122233
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH
Q 011905 310 ------STLIKGFCVEGNLDEAYQLIDKVVAGGSVSS-----GGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDG 376 (475)
Q Consensus 310 ------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~ 376 (475)
..++..|...|++.+|.+++..+.+.--..| ...|..-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 2577888888999999888888765311111 245666677788888888888888877542 233444
Q ss_pred HHHHHHH----HHHH-hcCCHHHHHHHHHHHH
Q 011905 377 LACSVMI----RELC-LGGQVLEGFCLYEDIE 403 (475)
Q Consensus 377 ~~~~~li----~~~~-~~g~~~~a~~~~~~~~ 403 (475)
.....+- ..+. ..+++..|...|-+..
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3322211 1234 6788888888776653
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.78 E-value=18 Score=31.97 Aligned_cols=168 Identities=11% Similarity=-0.003 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH----HHHhccCCCCCChhhHHHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL----MKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~----~~~m~~~~~~~~~~~~~~li 206 (475)
+|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++ ++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44556666777777877777654321 122333443333222 23334445566666555555
Q ss_pred HHHHhcCCHH-HHHHHHHHH----HHCC--CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 207 KGFCNAGRLE-DACGLFKVM----KRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 207 ~~~~~~~~~~-~a~~~~~~m----~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
..+.....-+ .-..+.+++ .+.| ..-|+.....+...|.+.+++.+|..-|- .. ..++...|..++.
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg----~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LG----TKESPEVLARMEY 175 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS----CTTHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hc----CCchHHHHHHHHH
Confidence 5555443211 112222222 2222 23467777888899999999999888772 21 1234456654444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
-+...+...+ ++...-..++ -|.-.+++..|..+++...+
T Consensus 176 ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 176 EWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 4433332211 1222222333 35556788888887766553
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.37 E-value=9.7 Score=28.41 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
+.-+..+-++.+....+.|++......+++|.+.+|+..|.++++-++.+-- ....+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~---~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG---PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC---CchhhHHHHHH
Confidence 3445566666666667778888888888888888888888888877776531 13345665543
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.62 E-value=9.4 Score=35.47 Aligned_cols=16 Identities=0% Similarity=-0.161 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHcC
Q 011905 428 HSVEAAKLARFMLKKR 443 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~ 443 (475)
..+++.+.+-+|+..|
T Consensus 360 s~~~~E~~L~~lI~~g 375 (429)
T 4b4t_R 360 SVAFLDNDLGKFIPNK 375 (429)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4566777777777554
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.56 E-value=9.2 Score=35.55 Aligned_cols=98 Identities=9% Similarity=-0.087 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHH--H
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS--SGGCYSSLVVELVRTKRLKEAEKLFSKMLA---SGVKPDGLAC--S 380 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~--~ 380 (475)
+...+...|.+.|+++.|.+.+.++...-..+ -...+-.+++.+...+++..+...+.+... .+-.|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56677778888888888888888877542222 245666777777788888888877777653 2222222111 0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 381 VMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111234557777777777666554
No 257
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=82.55 E-value=11 Score=32.01 Aligned_cols=43 Identities=7% Similarity=-0.101 Sum_probs=19.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGL---ACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~ 396 (475)
..++.....++.+.+.+.|..++.. -.+.| ...+..|+.+-+.
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPL-ILAVEKKHLGLVQ 236 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH-HHHHHTTCHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHH-HHHHHcCCHHHHH
Confidence 4455444455555566666554432 12223 3334556655433
No 258
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=82.25 E-value=7.1 Score=33.36 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=56.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHH
Q 011905 349 VELVRTKRLKEAEKLFSKMLASGVKPD---GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLC 424 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 424 (475)
...+..|+.+-+..+++.. |..++ ....+.+..+ +..|......++.+.+.+.|..+.. +..-. ..+...+
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~-t~L~~A~ 227 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAV 227 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC-CHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCC-cHHHHHH
Confidence 3344567765544444321 43332 2223344443 4456655556777778887764421 11222 2334445
Q ss_pred hcCCHHHHHHHHHHHHH-cCCCCChhh--HHHHHHHHHhcCCHhHHhhccccC
Q 011905 425 RKNHSVEAAKLARFMLK-KRIWLQGPY--VDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~-~~~~~~~~~--~~~l~~~~~~~g~~~~a~~l~~~~ 474 (475)
+.|+.+-+.. +++ .|..++... -...+....+.|+.+.++-+++.|
T Consensus 228 ~~~~~~~v~~----Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G 276 (285)
T 1wdy_A 228 EKKHLGLVQR----LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276 (285)
T ss_dssp HTTCHHHHHH----HHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHH----HHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence 6677654444 444 444333221 112334445667777776666543
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.54 E-value=14 Score=27.49 Aligned_cols=73 Identities=5% Similarity=0.085 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011905 302 CAPNRVTISTLIKGFCVEGN---LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 376 (475)
-.|+..+--...-++.+..+ ..++..+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+.+. .|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 34555555555555665554 3467777777776553223455566677777888888888888887754 5653
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.91 E-value=9.3 Score=29.79 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 412 DSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
+.+.--.+..+|.+.|++++|+.+++..
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 4455556888899999999999987654
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.73 E-value=8.9 Score=29.89 Aligned_cols=58 Identities=9% Similarity=0.002 Sum_probs=31.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCcC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRHG-CAAN-------LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g-~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
-+..+...|.++.|+-+.+.+.... ..|+ ..++..+.+++...|++..|...|++..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455555666666665555433211 1122 12445556666777777777777776544
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.47 E-value=7.6 Score=33.05 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=20.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+.|+++++++....-++.. +-|...-..++..+|-.|+|+.|.+-++...+
T Consensus 9 ~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444443333332 22333333344444444444444444443333
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.07 E-value=25 Score=28.37 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011905 357 LKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 409 (475)
..++.++|..|...|+--. ...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666666666554332 3445555555556666666666666666665544
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.07 E-value=21 Score=26.93 Aligned_cols=69 Identities=13% Similarity=0.007 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 373 KPDGLACSVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|+..+--.+..++.+.. +..++..+++++.+.+. .........+..++.+.|++++|.++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 466666555566666665 34567778887777542 2245556667778888888888888888888776
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=76.83 E-value=41 Score=30.10 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc
Q 011905 133 KVIFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~m~~ 157 (475)
..+|.-|...++.++|...++++..
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 3456666667777777777777653
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.01 E-value=50 Score=30.10 Aligned_cols=293 Identities=12% Similarity=0.052 Sum_probs=149.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccC-CCCC---CHhhHHHHHHHHHhcC-ChhHHHHHHHHhccCCCCCChhhH---
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEF-DLRP---DTIIYNNVIRLFCEKG-DMIAADELMKGMGLIDLYPDIITY--- 202 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~--- 202 (475)
....|...|.+.|+.++..+++...... +.-+ .......+++.+.... ..+.-.++..+..+.. .-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4445566677777777766666655431 1011 2334455666665532 2333333333332211 0112233
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCCcHH
Q 011905 203 ---VSMIKGFCNAGRLEDACGLFKVMKRH--GCA---ANLVAYSALLDGICRLGSMERALELLGEMEKEGGD--CSPNVV 272 (475)
Q Consensus 203 ---~~li~~~~~~~~~~~a~~~~~~m~~~--g~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ 272 (475)
.-++..|...|++.+|.+++..+.+. ... --..+|-.-+..|...+++.++...+......... ++|...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 25778888899999998888877763 111 11344566677888899999999888877553211 223222
Q ss_pred HHHH--HHHHHH-hcCCHHHHHHHHHHHHHc-C-C-CC---CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCChh
Q 011905 273 TYTS--VIQIFC-GKGMMKEALGILDRMEAL-G-C-AP---NRVTISTLIKGFCVEGNLDEAYQLID-KVVAGGSVSSGG 342 (475)
Q Consensus 273 ~~~~--li~~~~-~~g~~~~a~~~~~~m~~~-~-~-~p---~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 342 (475)
..-- -...+. ..+++..|...|-+.... . . .| +...|..+... . .++..+...++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l-~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-M-LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-H-TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-H-cCCHHHHHHHhccccccccCCccHH
Confidence 2111 122345 678899988887665321 1 0 11 11223222222 2 223222222222 111111345555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCchhhHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG----FLSSVDSDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~~ 418 (475)
.+..++.+| ..+++.+...++..... .+..|......+ ..+++.+...+ +. +....++..
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~-------------~~L~~~Ir~~~L~~i~~-pYsrIsl~~ 321 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL-------------GTLYDTMLEQNLCRIIE-PYSRVQVAH 321 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH-------------HHHHHHHHHHHHHHHHT-TCSEEEHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH-------------HHHHHHHHHHHHHHHhH-hhceeeHHH
Confidence 566666665 56778777777666532 234454321111 11222222211 11 234566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 419 LLLGLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
+...+.- ..+++...+-+|+..|.
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 7666543 67889999999987753
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.00 E-value=20 Score=25.08 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=6.5
Q ss_pred HHhcCChhHHHHHHH
Q 011905 174 FCEKGDMIAADELMK 188 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~ 188 (475)
+...|++++|..+.+
T Consensus 49 LmNrG~Yq~Al~l~~ 63 (115)
T 2uwj_G 49 LANQGRYQEALAFAH 63 (115)
T ss_dssp HHHTTCHHHHHGGGT
T ss_pred HHcchhHHHHHHhcC
Confidence 334444444444433
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.83 E-value=48 Score=29.35 Aligned_cols=168 Identities=12% Similarity=0.079 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI----LDRMEALGCAPNRVTIST 311 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~ 311 (475)
+|.++..=|.+.+++++|.+++..-.. .+.+.|+...|.++ ++...+.++++|......
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-----------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~r 99 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-----------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 445556668888999999988654332 23445655544443 355566778888877777
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHHh----CC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011905 312 LIKGFCVEGNLD-EAYQLIDKVVA----GG--SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384 (475)
Q Consensus 312 li~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 384 (475)
++..+.....-+ .=.++.+.+++ .| ..-+......+...|.+.+++.+|..-|- . |-.+....|..++.
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHH
Confidence 777776654321 12333343332 22 23366777888889999999999887762 2 43444466665555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
-+...+...++ + ......+-.|...++...|..+++...+
T Consensus 176 ew~~~~~~~e~----------------d-lfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 176 EWYKQDESHTA----------------P-LYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTSCGGGH----------------H-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCccH----------------H-HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44443331111 1 1223344456677888888887766654
No 269
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=73.37 E-value=15 Score=30.38 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=9.3
Q ss_pred HHHhcCChhHHHHHHHHhc
Q 011905 173 LFCEKGDMIAADELMKGMG 191 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~ 191 (475)
..+..|+.+.+..+++.+.
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~ 33 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQ 33 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3344555555555554433
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.27 E-value=21 Score=25.01 Aligned_cols=17 Identities=12% Similarity=-0.148 Sum_probs=7.2
Q ss_pred HHhcCCHHHHHHHHHhc
Q 011905 139 CEKARLANEAMWVLRKM 155 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m 155 (475)
+...|++++|..+.+..
T Consensus 50 LmNrG~Yq~Al~l~~~~ 66 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL 66 (116)
T ss_dssp HHHTTCHHHHHHHHTTS
T ss_pred HHcchhHHHHHHhcCCC
Confidence 33444444444444433
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.97 E-value=28 Score=26.31 Aligned_cols=72 Identities=6% Similarity=0.100 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011905 303 APNRVTISTLIKGFCVEGN---LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 376 (475)
.|+..+-....-++.+..+ ..++..+++++.+.+..-.......|.-++.+.|++++|.+..+.+++. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 4555555555556666554 3457777777766543323444555666777888888888888887765 5643
No 272
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.96 E-value=27 Score=28.69 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=7.3
Q ss_pred HHhcCCHHHHHHHHHH
Q 011905 316 FCVEGNLDEAYQLIDK 331 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~ 331 (475)
.+..|+.+-+..+++.
T Consensus 86 A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3445555444444433
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.15 E-value=53 Score=28.75 Aligned_cols=167 Identities=8% Similarity=0.024 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHH----HHHHhccCCCCCChhhHHHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE----LMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~----~~~~m~~~~~~~~~~~~~~li 206 (475)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +++-..+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444556667777777777776553221 2333444433333 234444455666666666666
Q ss_pred HHHHhcCC-----HHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 207 KGFCNAGR-----LEDACGLFKVMKRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 207 ~~~~~~~~-----~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
..+..... ..-..+...+-.+.| ..-++..+..+...|.+.|++.+|...|-.-. ..+...+..++-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~------~~s~~~~a~~l~ 173 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT------HDSMIKYVDLLW 173 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC------HHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC------CccHHHHHHHHH
Confidence 55544221 111222223333332 12367788888899999999988887664111 113445554444
Q ss_pred HHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 280 IFCGK---GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 280 ~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 333 (475)
-+... |...++-- ..-..++ .|.-.++...|..+++...
T Consensus 174 ~w~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 174 DWLCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 33333 43333211 1112222 3445678888888887664
No 274
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=64.49 E-value=73 Score=27.86 Aligned_cols=168 Identities=12% Similarity=0.075 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI----LDRMEALGCAPNRVTIST 311 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~ 311 (475)
.|.++..=|.+.+++++|.+++..-.. .+.+.|+...|.++ ++...+.+++++......
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~-----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL-----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 444555567777888888887654432 23445665554443 455556677777777777
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHH----hCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011905 312 LIKGFCVEGNLD-EAYQLIDKVV----AGG--SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384 (475)
Q Consensus 312 li~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 384 (475)
++..+.....-+ .=.++++.++ +.| ..-+......+...|.+.|++.+|...|-. |-.-+...+..++.
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHH
Confidence 777665533211 1233333333 222 122667788888888899999888876641 21113445555544
Q ss_pred HHHhc---CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 385 ELCLG---GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 385 ~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
-+... |...++ +.. ....+-.|.-.|+...|..+++...+
T Consensus 174 ~w~~~~~~~~~~e~----------------dlf-~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 174 DWLCQVDDIEDSTV----------------AEF-FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHTTCCCHHHH----------------HHH-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchH----------------HHH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 43333 332221 111 22333445567888888888776653
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.42 E-value=56 Score=26.18 Aligned_cols=110 Identities=12% Similarity=0.013 Sum_probs=45.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 207 (475)
+...-...+.++.+.+.. ++...+..+.. .++..+-...+.++.+.++.+.. ..+.++.. .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHH
Confidence 444444444555555542 22333333322 24444545555555555553322 22222322 244444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
++.+.|+.+ +...+..+.+ .++..+-...+.++.+.+.
T Consensus 135 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 554444432 2233333332 2344444444445554444
No 276
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=63.30 E-value=20 Score=28.57 Aligned_cols=43 Identities=7% Similarity=0.047 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHhHHhhcccc
Q 011905 431 EAAKLARFMLKKRIWLQGPYVD--KIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 431 ~A~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.-.++++.+++.|..++..... ..+....+.|+.+.++-+++.
T Consensus 156 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred hHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 3356666677777655443211 234445566777777666554
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.28 E-value=36 Score=23.85 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 011905 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 186 (475)
..++|..+-+-+...+ + .-...+|+ .+...|++++|..+.+... .||...|-.|.. .+.|..+++..-
T Consensus 21 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 3455555555555543 2 22223343 5777899999988887766 488888876654 467887888777
Q ss_pred HHHhccCCCCCChhhH
Q 011905 187 MKGMGLIDLYPDIITY 202 (475)
Q Consensus 187 ~~~m~~~~~~~~~~~~ 202 (475)
+.++...| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 77777666 4444444
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.35 E-value=37 Score=23.78 Aligned_cols=83 Identities=12% Similarity=0.195 Sum_probs=50.1
Q ss_pred CHHHHHHHHHhcccCCCCCCHhhHHHH--HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 144 LANEAMWVLRKMPEFDLRPDTIIYNNV--IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 144 ~~~~A~~~~~~m~~~~~~~~~~~~~~l--l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
.-++|..|-+.+...+ +.++ ..+ +..+...|++++|..+.+.+. .||...|..|-. .+.|..+++..-
T Consensus 22 ~HqEA~tIAdwL~~~~---~~E~-v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG---EEEA-VQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHTT---CHHH-HHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---cHHH-HHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 4566666666665543 3222 223 335667788888888776655 677777766543 466777777777
Q ss_pred HHHHHHCCCCcCHHHH
Q 011905 222 FKVMKRHGCAANLVAY 237 (475)
Q Consensus 222 ~~~m~~~g~~~~~~~~ 237 (475)
+.++..+| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 76776665 3344444
No 279
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=62.20 E-value=51 Score=30.26 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=8.7
Q ss_pred HHHHhcCChhHHHHHHH
Q 011905 172 RLFCEKGDMIAADELMK 188 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~ 188 (475)
...+..|+.+.+..+++
T Consensus 118 ~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 118 HIAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33445566555555544
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.05 E-value=61 Score=26.14 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011905 284 KGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 339 (475)
.+...++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3345677777777776665433 3456666666777777777777777777777766
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=61.58 E-value=15 Score=30.31 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=7.3
Q ss_pred HHhcCCHHHHHHHHHH
Q 011905 351 LVRTKRLKEAEKLFSK 366 (475)
Q Consensus 351 ~~~~g~~~~A~~~~~~ 366 (475)
..+.|+.+-+..+++.
T Consensus 217 A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 217 AKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHh
Confidence 3445555544444433
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.93 E-value=54 Score=25.10 Aligned_cols=56 Identities=9% Similarity=-0.043 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011905 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
+++..+|..|..+|+-. .-...|......+-..|++++|.++|+.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGT-LSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTT-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34777888888776543 345667777777778888888888888888777555433
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=60.26 E-value=38 Score=27.61 Aligned_cols=22 Identities=14% Similarity=-0.237 Sum_probs=10.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 011905 384 RELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
....+.|+.+-+..+++...+.
T Consensus 215 ~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHcCcHHHHHHHHHhhhcc
Confidence 3345667766665555544443
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=59.85 E-value=62 Score=29.67 Aligned_cols=330 Identities=12% Similarity=0.124 Sum_probs=155.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCccCHHh--HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc
Q 011905 100 ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM--MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177 (475)
Q Consensus 100 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 177 (475)
.+...+..|+.+.+..+++ .|..|+... ..+.+...+..|+.+-+..+++.-...+. .+.... +.+...+..
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~-t~L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDDQ-TPLHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTSC-CHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCC-CHHHHHHHC
Confidence 4455566777666555554 465554321 22355666677887766666654332211 122222 344455677
Q ss_pred CChhHHHHHHHHhccCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCChH
Q 011905 178 GDMIAADELMKGMGLIDLYPD---IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN---LVAYSALLDGICRLGSME 251 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~ 251 (475)
|+.+-+.-+++. |..++ ....+ .+...+..|+.+.+..+++ .+..++ ..-+ +.+...+..|+.+
T Consensus 91 g~~~~v~~Ll~~----ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~~ 160 (437)
T 1n11_A 91 GHTNMVKLLLEN----NANPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKVR 160 (437)
T ss_dssp TCHHHHHHHHHH----TCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCHH
T ss_pred CCHHHHHHHHhC----CCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCHH
Confidence 887655555543 33333 22222 3344556777766555554 333221 1111 2344456677766
Q ss_pred HHHHHHHHHHhcCCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHH
Q 011905 252 RALELLGEMEKEGGDCS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI--STLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~~~a~~~ 328 (475)
-+..+++ .+..+. .+....+ .+...+..|+.+ +++.+.+.|..++...+ ...+...+..|+.+-+..+
T Consensus 161 ~v~~Ll~----~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 231 (437)
T 1n11_A 161 VAELLLE----RDAHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231 (437)
T ss_dssp HHHHHHH----TTCCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHh----CCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 5544443 222111 1111122 233445566654 44555566655543221 1233445667776554444
Q ss_pred HHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 329 IDKVVAGGSVSSG---GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 329 ~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (475)
.+.|..++. .-.+. +...+..|..+-+..+ .+.|..++. ...+.|.. .+..|..+-+ +.+
T Consensus 232 ----l~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~L~~-A~~~~~~~~~----~~L 297 (437)
T 1n11_A 232 ----LQYGGSANAESVQGVTP-LHLAAQEGHAEMVALL----LSKQANGNLGNKSGLTPLHL-VAQEGHVPVA----DVL 297 (437)
T ss_dssp ----HHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHHH----HTTTCCTTCCCTTCCCHHHH-HHHHTCHHHH----HHH
T ss_pred ----HHcCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHH----HhcCCCCCCCCCCCCCHHHH-HHHcCCHHHH----HHH
Confidence 444443322 11222 3334566776544433 444443322 22233333 3456666544 444
Q ss_pred HHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCCHhHHhhcccc
Q 011905 403 EKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV--DKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 403 ~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.+.|..... +..-.+.| ...+..|+.+ +++.+++.|..++.... ...+......|+.+.+.-+++.
T Consensus 298 l~~g~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 366 (437)
T 1n11_A 298 IKHGVMVDATTRMGYTPL-HVASHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366 (437)
T ss_dssp HHHTCCTTCCCSSCCCHH-HHHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HhCCccCCCCCCCCCCHH-HHHHHcCcHH----HHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC
Confidence 455543211 22223333 3345667765 34445556655443221 1233444567888888777664
No 285
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=57.16 E-value=1.8e+02 Score=30.00 Aligned_cols=92 Identities=9% Similarity=0.038 Sum_probs=45.5
Q ss_pred HHHHHHHhcCC---hHHHHHHHHHHHhcC--CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 239 ALLDGICRLGS---MERALELLGEMEKEG--GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 239 ~ll~~~~~~g~---~~~a~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
.++...|+.|+ .++|.+.|+.....+ ..++||.. ..+...-.+.|..++-..+++...... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 34555555554 345666666655432 22344432 222333344555555555555555432 222334555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~ 335 (475)
.+++-..+.+...++++.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHhCCCCCHHHHHHHHHHHhCC
Confidence 6666666666666666655543
No 286
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=56.76 E-value=39 Score=27.68 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=12.3
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 011905 422 GLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~ 441 (475)
..+..|+.+.+.++.+.+.+
T Consensus 216 ~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 216 CASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33456666667776666654
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.64 E-value=11 Score=31.76 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=10.4
Q ss_pred HHHHHhcCCHhHHhhccc
Q 011905 455 VEHLKKSGDEELITNLPK 472 (475)
Q Consensus 455 ~~~~~~~g~~~~a~~l~~ 472 (475)
+....+.|+.+.++.+++
T Consensus 229 L~~A~~~g~~~~v~~Ll~ 246 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIR 246 (260)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333455677776666654
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.74 E-value=50 Score=27.52 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKV 224 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~ 224 (475)
......+..+.+.|+.++|.++|-+
T Consensus 92 ~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHH
Confidence 3333444444555555555554443
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=55.01 E-value=53 Score=28.72 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSVMIRELCLGGQ--VLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~ 409 (475)
...++.-|...|+.++|.+.++++. .|. ......+..++-+.++ .+....++..+.+.|+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~----~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC----CGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC----CCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 4566777777788888888877774 221 1223333334433322 344556677776666543
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=54.34 E-value=1.6e+02 Score=28.66 Aligned_cols=88 Identities=5% Similarity=-0.030 Sum_probs=48.2
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHh
Q 011905 86 LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165 (475)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~ 165 (475)
..++.+.....-+..+..+.+.+++......+.. .+.+...-.....+....|+..+|......+-..| .....
T Consensus 64 ~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~ 137 (618)
T 1qsa_A 64 ANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPN 137 (618)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCT
T ss_pred HCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcH
Confidence 3445554455555666777777777766654322 23445544456667777777666655555443333 22334
Q ss_pred hHHHHHHHHHhcCC
Q 011905 166 IYNNVIRLFCEKGD 179 (475)
Q Consensus 166 ~~~~ll~~~~~~g~ 179 (475)
.+..++..+.+.|.
T Consensus 138 ~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 138 ACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCC
Confidence 45556555555443
No 291
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=54.05 E-value=1.4e+02 Score=27.72 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=36.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhcC
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS-----MERALELLGEMEKEG 264 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~ 264 (475)
+..+.+.|+.++.+|.+.|..|....-..+..+.-.-|. ...|...++....-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 457888999999999988877665555555555555553 445566666666633
No 292
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=53.79 E-value=74 Score=28.22 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 011905 237 YSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4566777777788888777777664
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.38 E-value=77 Score=24.60 Aligned_cols=54 Identities=6% Similarity=-0.067 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
+..+|..|..+|+-. .-...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 79 p~~if~~L~~~~IG~-~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGV-SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSST-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 555666666665532 244556666666666677777777777766666555443
No 294
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.76 E-value=1.3e+02 Score=26.95 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR--LEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
...+|.-|...++.++|...++++..... .......++......++ .+.+-.++..+.. ++-+.......+.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~ 130 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFD 130 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 46778889999999999999999863221 12223334443333333 3344556665553 4444444443333
No 295
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=51.14 E-value=1.2e+02 Score=26.31 Aligned_cols=19 Identities=5% Similarity=-0.029 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 011905 135 IFNLCEKARLANEAMWVLR 153 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~ 153 (475)
.+...++.|+.+-+..+++
T Consensus 28 ~L~~Av~~g~~~~V~~LL~ 46 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLE 46 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444445566555555544
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.92 E-value=91 Score=25.93 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=18.8
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011905 232 ANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
++.......+..+.+.|+-++|.++|=+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 345555556666777777777777665543
No 297
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=50.82 E-value=89 Score=24.59 Aligned_cols=63 Identities=10% Similarity=-0.040 Sum_probs=26.7
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhh---HHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCcC
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIIT---YVSMIKGFCN-AGRLEDACGLFKVMKRHGCAAN 233 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~~~ 233 (475)
+...+..|+.+.-.++.+-+.+.|..++... ++.|..++.. ..+.....++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 3344445555444445555555554443321 1222222211 2233344455555566665444
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=50.81 E-value=63 Score=24.55 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=40.8
Q ss_pred HHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011905 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+.+.+.|.+++ .--..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 16 ~~l~~~g~r~T---~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNS---KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CH---HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCC---HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34556666542 2334555566666666778888888887776677777777788888777544
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=49.77 E-value=1.3e+02 Score=26.19 Aligned_cols=65 Identities=12% Similarity=0.197 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCC
Q 011905 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN--LDEAYQLIDKVVAGGSVSS 340 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 340 (475)
+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+...+++..+.+.++.+.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 44566666666677776666666422111 12233333333333322 3445566666665555543
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.50 E-value=12 Score=31.44 Aligned_cols=15 Identities=7% Similarity=0.273 Sum_probs=6.9
Q ss_pred HhcCCHHHHHHHHHH
Q 011905 352 VRTKRLKEAEKLFSK 366 (475)
Q Consensus 352 ~~~g~~~~A~~~~~~ 366 (475)
+..|+.+-+..++++
T Consensus 233 ~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 233 AKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHh
Confidence 344555544444443
No 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=48.07 E-value=53 Score=28.07 Aligned_cols=19 Identities=5% Similarity=-0.186 Sum_probs=8.8
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 011905 136 FNLCEKARLANEAMWVLRK 154 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~ 154 (475)
+...+..|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334445555544444443
No 302
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=47.61 E-value=1e+02 Score=24.26 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=73.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHh-cC
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNR-VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG---CYSSLVVELVR-TK 355 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~-~g 355 (475)
.++.|+.+....++.. +..... ..-.+.+...+..|+.+.-.++.+.+++.|..++.. -.+.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3556777765554432 211111 111233444556666666667777777777666432 12233322222 23
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCH-HHHHHHHHHHHH-cCCCCCC-chhhHHHHHHHHHhcCCH
Q 011905 356 RLKEAEKLFSKMLASGVKPDGLA---CSVMIRELCLGGQV-LEGFCLYEDIEK-IGFLSSV-DSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~-~~a~~~~~~~~~-~~~~~~~-~~~~~~~li~~~~~~g~~ 429 (475)
+.....++.+.+++.|..++... .+..+...+..+.. ..-..+++.+.+ .|..+.. |..-.+.+ ....+.|+.
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL-~~A~~~~~~ 167 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL-EFVKRCQKP 167 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH-HHHHTTTCH
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH-HHHHHcCCH
Confidence 44455667777777776665422 20222222223322 344556677776 6543311 11222222 233455555
Q ss_pred HHHHHHHHHHHHcCC
Q 011905 430 VEAAKLARFMLKKRI 444 (475)
Q Consensus 430 ~~A~~~~~~m~~~~~ 444 (475)
+-..-+.+...+.++
T Consensus 168 ~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 168 IALKMMEDYIKKYNL 182 (186)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 444333333434443
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.58 E-value=56 Score=24.64 Aligned_cols=63 Identities=14% Similarity=0.064 Sum_probs=40.1
Q ss_pred HHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011905 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+.+.+.|++.++ .-..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 11 ~~l~~~g~r~T~---qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITP---QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCH---HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCH---HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 345566665432 234455555555666667788888777776677777777777777777543
No 304
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=46.46 E-value=1.4e+02 Score=25.46 Aligned_cols=115 Identities=21% Similarity=0.212 Sum_probs=66.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhc
Q 011905 242 DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC--APNRVTISTLIKGFCVE 319 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~ 319 (475)
....+.|++++|++....-++.. |.|...-..++..+|-.|++++|.+-++...+... .|...+|..+|++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH----
Confidence 34567788888888887777653 56777777788888888888888888877766421 1112234444432
Q ss_pred CCHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 011905 320 GNLDEAYQLIDKVVAGGSVS-----SGGCYSSLVVELV--RTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 320 ~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 369 (475)
+..=.++...+-.| ...-...++.+.. ..|+.++|.++-.++.+
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 22222333332222 1222334444443 34777777777766654
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.46 E-value=69 Score=25.19 Aligned_cols=12 Identities=8% Similarity=0.385 Sum_probs=4.9
Q ss_pred HHHHHHHhCCCC
Q 011905 327 QLIDKVVAGGSV 338 (475)
Q Consensus 327 ~~~~~~~~~~~~ 338 (475)
++++.+.+.|..
T Consensus 159 ~~v~~Ll~~ga~ 170 (201)
T 3hra_A 159 DIVKLLMENGAD 170 (201)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHCCCC
Confidence 344444444433
No 306
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.23 E-value=1.5e+02 Score=26.16 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc
Q 011905 133 KVIFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~m~~ 157 (475)
..++.-|...|+.++|...++++..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 3456666667777777777777753
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.38 E-value=89 Score=23.01 Aligned_cols=65 Identities=12% Similarity=0.284 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCc
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR--LEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~ 232 (475)
.+.++.-|...|+.++|.+.++++..-. -....+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3556777777788888888777775211 0112223334444444332 355666777776666443
No 308
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=45.37 E-value=1e+02 Score=23.67 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
+.+..++..+.+.|.--|...-...+......| .....+-.++..+|+
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI 94 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC
Confidence 344445555555554433333334444433322 123344555555554
No 309
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=45.21 E-value=58 Score=24.22 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=39.6
Q ss_pred HHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011905 401 DIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.+.+.|.+.++ .-..++..+...+ ..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 8 ~l~~~g~r~T~---qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTL---PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCH---HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCH---HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 35556665432 2344555555555 56678888888887776677777777777777777544
No 310
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=44.94 E-value=1.1e+02 Score=24.05 Aligned_cols=122 Identities=12% Similarity=0.065 Sum_probs=55.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 207 (475)
+...-...+.++.+.+..+ +...+..+.. .++..+-...+.++.+.++.+....+. .+.. .++..+-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLI-KALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHH-HHHc---CCCHHHHHHHHH
Confidence 4444444455555555432 3333333333 245555556666666666543333333 3332 345555455555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
++.+.++.+ +...+..+.+. ++..+-...+.++.+.|. .++...+..+..
T Consensus 130 aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 130 ALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 555555432 33333333332 355555555555555554 234444444443
No 311
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=44.91 E-value=84 Score=25.39 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=6.7
Q ss_pred HHhcCChhHHHHHHH
Q 011905 174 FCEKGDMIAADELMK 188 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~ 188 (475)
.+..|+.+....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 334444444444443
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.90 E-value=1.1e+02 Score=23.27 Aligned_cols=50 Identities=8% Similarity=0.075 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011905 290 ALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 339 (475)
+.++|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555444322 2334444455555555555555555555555555
No 313
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.76 E-value=71 Score=27.23 Aligned_cols=46 Identities=7% Similarity=0.061 Sum_probs=21.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 104 SRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153 (475)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 153 (475)
....|+.+.+..+++ .|..++...-.+.+...+..|+.+-+..+++
T Consensus 38 A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 38 AIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 344566555444443 3443332222234455555666555544444
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.71 E-value=63 Score=26.58 Aligned_cols=52 Identities=8% Similarity=-0.150 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011905 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 446 (475)
.+..+|..|..+|+-. .-...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQ-ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCST-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555666666555432 234455555555556666666666666666555444
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.48 E-value=83 Score=23.67 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=23.9
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 333 VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 333 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 14 ~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 14 KETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3444444332 22333344344444445555555544443334444333344444443
No 316
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=40.22 E-value=1.4e+02 Score=23.94 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=10.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 011905 316 FCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~ 336 (475)
.+..|+.+-+..+++.+.+.|
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC
Confidence 344455555544445554444
No 317
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=40.18 E-value=1.8e+02 Score=25.16 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=24.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHh---HHHHHHHHHhcCCHHHHHHHHH
Q 011905 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM---MKVIFNLCEKARLANEAMWVLR 153 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~ 153 (475)
+-...+.|+.+.+..+++ .|..++... -.+-+...++.|+.+-+.-+++
T Consensus 29 L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~ 80 (337)
T 4g8k_A 29 LIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 80 (337)
T ss_dssp HHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 334456677666655554 354443211 1123444556677655544444
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=40.03 E-value=84 Score=24.27 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=38.1
Q ss_pred HHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHh
Q 011905 401 DIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK--RIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.+.+.|.+.++ --..++..+...++.-.|.++++.+.+. +...+..|...-++.+.+.|-..
T Consensus 23 ~L~~~g~r~T~---qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 23 ILRQGGLKYTK---QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHTCCCCH---HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCH---HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34455655422 2344555566666666777777777766 65667777666677777776543
No 319
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.99 E-value=68 Score=24.37 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011905 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+.+.+.|+++++ --..++..+...+ ..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 6 ~~l~~~g~r~T~---qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTL---PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCH---HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345566665432 2334445555554 56668888888877776677777777777777777554
No 320
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=39.94 E-value=92 Score=21.61 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhc-----ccCCCCCCHhhHHHH
Q 011905 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM-----PEFDLRPDTIIYNNV 170 (475)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m-----~~~~~~~~~~~~~~l 170 (475)
-.+.++.+++..-|+.|+..+...++..|...+. + +.++.++. ...|..|+....+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 3456677777777888888888888887777664 2 33322221 223556666655543
No 321
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.82 E-value=78 Score=20.76 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=38.8
Q ss_pred HHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011905 401 DIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.+.+.|+..+ . --..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-..
T Consensus 7 ~l~~~g~~~t--~-~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 7 ALKKAGLKVT--L-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHTTCCCC--H-HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcC--H-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 3555665442 1 2234555555543 45567778888877776677778777788887777543
No 322
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.96 E-value=60 Score=26.70 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=50.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC
Q 011905 88 SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD 163 (475)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~ 163 (475)
..|+.++.....-+..... .+...++|..|...|+-. -...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 111 ~rYknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 111 PLYKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp GGGTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred ccccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4555565544333333322 345667888888888744 455677777788899999999999999887665554
No 323
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=38.77 E-value=1.7e+02 Score=25.59 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=12.9
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 011905 317 CVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~ 334 (475)
...|++++|...|+.++.
T Consensus 125 ~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 456778888877777654
No 324
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.41 E-value=1.3e+02 Score=22.92 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCC
Q 011905 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM--MKEALGILDRMEALGCAP 304 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p 304 (475)
+.++.-|...|+.++|.+.++++... .-....+...+..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p---~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP---HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG---GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC---cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 44556666666666666666666420 00112223333333333222 334555555555555443
No 325
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.71 E-value=57 Score=24.63 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=39.6
Q ss_pred HHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011905 400 EDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
+.+.+.|+++++ --..++..+...+ .-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 8 ~~L~~~g~r~T~---qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTP---QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCH---HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCH---HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 345556665432 2334444555555 5678888888887776677777777778887777543
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.59 E-value=82 Score=23.92 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=25.3
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 332 VVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444443322 33344444444444455555555555444444444444444444444
No 327
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.04 E-value=78 Score=23.48 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=24.7
Q ss_pred HhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 333 VAGGSVSSGGCYSSLVVELVRTK-RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 333 ~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 10 ~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 10 RKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444332 233344444333 34445555555555444444444444444444443
No 328
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.99 E-value=80 Score=24.13 Aligned_cols=64 Identities=13% Similarity=0.285 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR--LEDACGLFKVMKRHGCA 231 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~ 231 (475)
.+.++.-|...|+.++|.+.++++..-. -....+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4556777777777777777777775210 0112223333444444322 34566666666666544
No 329
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=36.28 E-value=52 Score=20.86 Aligned_cols=42 Identities=7% Similarity=-0.049 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+.++..++...-+++++-.++++.+.|.. +...|-.-++.++
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g~I---~l~~ylK~vR~La 47 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRGTI---PLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHH
Confidence 34444444444444555555555544432 3334444444443
No 330
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.44 E-value=1.3e+02 Score=24.28 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=86.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHH
Q 011905 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR---VTISTLIKGF 316 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~ 316 (475)
.+...++.|+.+....++..-... ....+..-++.+ ...+..|+.+ +++.+.+.|..++. ...+.+ ...
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A 80 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSL--ATRTDQDSRTAL-HWACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPL-HIA 80 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGG--GGCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHH-HHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhh--hhcCCCCCCCHH-HHHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHH-HHH
Confidence 466677888988888877653321 012233333333 3445566654 44444455554432 222233 344
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcC
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVSSG---GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL---ACSVMIRELCLGG 390 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g 390 (475)
+..|+.+ +++.+.+.|..++. .-.+. +...+..|+.+-+..+ .+.|..++.. ..+.|. ..+..|
T Consensus 81 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~L~-~A~~~~ 150 (231)
T 3aji_A 81 ASAGXDE----IVKALLVKGAHVNAVNQNGCTP-LHYAASKNRHEIAVML----LEGGANPDAKDHYDATAMH-RAAAKG 150 (231)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHH-HHHHHT
T ss_pred HHcCHHH----HHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCcHHH-HHHHcC
Confidence 5566665 44445555554432 22223 3344566776644433 4445444322 223333 334556
Q ss_pred CHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 391 QVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
+.+-+ +.+.+.|..+.. +..-.+. +...++.|+.+ +++.+++.|..++
T Consensus 151 ~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 151 NLKMV----HILLFYKASTNIQDTEGNTP-LHLACDEERVE----EAKFLVTQGASIY 199 (231)
T ss_dssp CHHHH----HHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred CHHHH----HHHHhcCCCccccCCCCCCH-HHHHHHCCCHH----HHHHHHHCCCCCC
Confidence 66544 444455543311 2222223 33345666654 4444556665544
No 331
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=35.43 E-value=2.8e+02 Score=25.85 Aligned_cols=64 Identities=11% Similarity=-0.022 Sum_probs=27.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 011905 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194 (475)
Q Consensus 130 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 194 (475)
..|..-.+.+...|++++|..+--.-+. |+-.+..|.+.+-.+=...|+..-.+.+|..+.+.|
T Consensus 362 ~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 362 ELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 3333334444445555555554444432 233344444443333333344444444554444443
No 332
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.08 E-value=74 Score=23.98 Aligned_cols=33 Identities=6% Similarity=-0.016 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 345555555544443334433333333333333
No 333
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.99 E-value=41 Score=20.85 Aligned_cols=29 Identities=28% Similarity=0.149 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011905 430 VEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 430 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
++|.+.|.+|++..--++.-+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34444444444432223334444444444
No 334
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.95 E-value=54 Score=24.19 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011905 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
.++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 344555555666677888888877776677777777777777777543
No 335
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.76 E-value=1.3e+02 Score=22.01 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 011905 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM--MKEALGILDRMEALGCAPN 305 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 305 (475)
..++.-|...|+.++|.+.++++.... -....+...+..++-+.+. .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~---f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPH---FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG---GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCc---cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 445666666666666666666664210 0112233333334433321 3445556666655554433
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.28 E-value=4.1e+02 Score=27.50 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHHHHHHHhcC
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSVIQIFCGKG 285 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g 285 (475)
.-|..++..+-+.+.++.+.++-+...+.-..-.+ ....|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 35778889999999999999988888763211111 1346788888877655
No 337
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=33.61 E-value=2.9e+02 Score=25.52 Aligned_cols=140 Identities=17% Similarity=0.213 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHHhc---C---CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHHHh
Q 011905 249 SMERALELLGEMEKE---G---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-A---PNRVTISTLIKGFCV 318 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~---~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~---p~~~~~~~li~~~~~ 318 (475)
..++...++...... + .++..+......++.. ..|+..+++.+++.+..... . ....+...+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v------ 237 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELL------ 237 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHH------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHH------
Confidence 456667777776653 1 1123344455555544 46888888888877664321 0 011222111
Q ss_pred cCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-
Q 011905 319 EGNLDEAYQLIDKVVAGGS---VSSGGCYSSLVVEL---VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ- 391 (475)
Q Consensus 319 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~- 391 (475)
++...... ..+......++.++ .+.++.+.|+..+.+|.+.|..|....-..+..+.-..|.
T Consensus 238 -----------~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 238 -----------TEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp -----------HHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred -----------HHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 12221111 00111222344444 3567999999999999999877765555555556555553
Q ss_pred ----HHHHHHHHHHHHHcCC
Q 011905 392 ----VLEGFCLYEDIEKIGF 407 (475)
Q Consensus 392 ----~~~a~~~~~~~~~~~~ 407 (475)
...|...++.....|.
T Consensus 307 ~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 307 DPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp CTHHHHHHHHHHHHHHHSCH
T ss_pred ChhHHHHHHHHHHHHHHhCC
Confidence 3345566666666663
No 338
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.58 E-value=1.8e+02 Score=23.05 Aligned_cols=154 Identities=14% Similarity=0.022 Sum_probs=80.0
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
++...-...+..+.+.+.. .+...+..+.. .++...-...+.++.+.++.+....+. ++.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHHH
Confidence 4555555566666666653 33333333333 246666666666777776644333333 3332 35566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
.++.+.++.+ +...+..+.+ .++..+-...+.++.+.|..+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK-----DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-----CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-----CCCHHHHHHHHHHHHHhCc
Confidence 6666666643 3333333433 346666666666666666543 3444444443 2455555555666666554
Q ss_pred HHHHHHHHHHHHH
Q 011905 287 MKEALGILDRMEA 299 (475)
Q Consensus 287 ~~~a~~~~~~m~~ 299 (475)
+++...+..+.+
T Consensus 173 -~~~~~~L~~~l~ 184 (211)
T 3ltm_A 173 -ERVRAAMEKLAE 184 (211)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHh
Confidence 334444444443
No 339
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.52 E-value=2.9e+02 Score=28.68 Aligned_cols=110 Identities=12% Similarity=0.053 Sum_probs=61.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS----------------- 409 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----------------- 409 (475)
++..+...|..+-|.++..- ++-+...--.+.++|...|++++|...|+++.. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 45555666666654443221 122333223345566777777777777765431 1110
Q ss_pred ----CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcC
Q 011905 410 ----SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP----YVDKIVEHLKKSG 462 (475)
Q Consensus 410 ----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~g 462 (475)
......|..++..+-+.+-++.+.++.+.+++.--..|.. .+..++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0022367777777778888888888888888653233332 4555565555443
No 340
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.33 E-value=1.7e+02 Score=22.63 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=30.5
Q ss_pred hcCChhHHHHHHHHhccCCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 011905 176 EKGDMIAADELMKGMGLIDLYP--DIITYVSMIK-G-----FCNAGRLEDACGLFKVMKR 227 (475)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~m~~ 227 (475)
..|++-+|.++++..-...-.+ +...|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777665443334 4455566665 2 2345777777777766544
No 341
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.29 E-value=53 Score=24.59 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011905 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
..++..+...++.-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4455555565666678888888887776777777777788888777544
No 342
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.15 E-value=1.5e+02 Score=28.15 Aligned_cols=16 Identities=6% Similarity=-0.155 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHcCC
Q 011905 392 VLEGFCLYEDIEKIGF 407 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~ 407 (475)
.++|+.+...|...|.
T Consensus 416 ~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 416 EQTVEYMVSRAIRDGV 431 (523)
T ss_dssp SSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3568888888887664
No 343
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=32.42 E-value=1.9e+02 Score=22.98 Aligned_cols=181 Identities=8% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011905 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS--TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
.+...+..|+ .++++.+.+.|..++..... +.+...+..|+.+-+..+++.-...-...+..-.+.+..+....
T Consensus 28 ~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 103 (223)
T 2f8y_A 28 ALHLAARYSR----SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103 (223)
T ss_dssp HHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred hHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhC
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011905 355 KRLKEAEKLFSKMLASGVKPDGLA--CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
. .++++.+.+.|..++... -...+...+..|+ .++++.+.+.|..+......-...+...++.|+.
T Consensus 104 ~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--- 171 (223)
T 2f8y_A 104 V-----EGMLEDLINSHADVNAVDDLGKSALHWAAAVNN----VDAAVVLLKNGANKDMQNNREETPLFLAAREGSY--- 171 (223)
T ss_dssp C-----HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH---
T ss_pred c-----HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH---
Q ss_pred HHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHhHHhhccccC
Q 011905 433 AKLARFMLKKRIWLQGPYVD--KIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~l~~~~ 474 (475)
++++.+++.|..++..... ..+....+.|..+.++-+++.+
T Consensus 172 -~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g 214 (223)
T 2f8y_A 172 -ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214 (223)
T ss_dssp -HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred -HHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcC
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.39 E-value=88 Score=23.72 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 34 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344444444444433333333333333333333
No 345
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.82 E-value=1.2e+02 Score=23.47 Aligned_cols=43 Identities=9% Similarity=-0.003 Sum_probs=17.4
Q ss_pred HHHHhcCCHHHHHHHHHhcccC--CCCCCHhhHHHHHHHHHhcCC
Q 011905 137 NLCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIRLFCEKGD 179 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~ 179 (475)
..+...+..-.|.++++.+.+. +...+..|.-.-+..+.+.|-
T Consensus 40 ~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 40 KTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3333333334444444444433 323333333334444444443
No 346
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=31.78 E-value=2.1e+02 Score=23.37 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHCCCC
Q 011905 359 EAEKLFSKMLASGVK 373 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~ 373 (475)
.+..++..+.+.|.-
T Consensus 94 ~i~~vl~~L~~~g~l 108 (221)
T 3d5l_A 94 FVEPILKKLRGQQLI 108 (221)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 333444444444443
No 347
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.42 E-value=1e+02 Score=24.98 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=10.4
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 011905 387 CLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~ 404 (475)
+..|+...+.++.+.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 455566666666665554
No 348
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=30.75 E-value=64 Score=26.05 Aligned_cols=54 Identities=11% Similarity=-0.035 Sum_probs=26.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG 301 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 301 (475)
+...++.|+.+.+..+++.-... ....+..-++. +...+..|+.+ +++.+.+.|
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~~ 59 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSL--LLQKDQDGRIP-LHWSVSFQAHE----ITSFLLSKM 59 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGG--TTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHhcCccc--cccCCCCCCCH-HHHHHHcCCHH----HHHHHHhcc
Confidence 45566777877766666543321 01123323333 33345556654 444444555
No 349
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=30.48 E-value=2e+02 Score=22.62 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=29.9
Q ss_pred hHHHHHH-HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCC
Q 011905 131 MMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL 195 (475)
Q Consensus 131 ~~~~li~-~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 195 (475)
.|..++. .+--.|.+.+++-++...-. .+..-|..| +|-+.+++..|+..++.+....+
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lNT----~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kv 93 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLNT----CTSKYYESL--CYKKKKDYKKAIKSLESILEGKV 93 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCCB----HHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcch----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccc
Confidence 4444444 33345666666666554321 122222222 34556677777777776664433
No 350
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.21 E-value=2.1e+02 Score=22.91 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=33.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcC
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-----VLEGFCLYEDIEKIG 406 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~ 406 (475)
+..+++.|+-.+.+|++.|-.|....-..++-+.-..|. +..|...++.....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 457788888888888887766655555555555544442 334555555555555
No 351
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.20 E-value=1.9e+02 Score=22.32 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 011905 319 EGNLDEAYQLIDKVVAGGSVS--SGGCYSSLVV-E-----LVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 319 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 369 (475)
.|++-+|-++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777766554444 3445555555 1 2346777777777776654
No 352
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=29.65 E-value=86 Score=23.33 Aligned_cols=13 Identities=23% Similarity=0.463 Sum_probs=6.3
Q ss_pred HhcCCHhHHhhcc
Q 011905 459 KKSGDEELITNLP 471 (475)
Q Consensus 459 ~~~g~~~~a~~l~ 471 (475)
...|+.+.++-++
T Consensus 141 ~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 141 LQRGAQDLVDILQ 153 (156)
T ss_dssp HHSCCHHHHHHHH
T ss_pred HHcCcHHHHHHHH
Confidence 4455555554443
No 353
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=29.40 E-value=2.2e+02 Score=22.87 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHhc---CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011905 170 VIRLFCEK---GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR-----LEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 170 ll~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
+|+++.|+ .+.+.|+-.+-+|.+.| .|.-..-..++-+.-..|. ...|...++....-|.+--.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 011905 242 DGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~ 262 (475)
--++.+-+-..+...++...+
T Consensus 96 iyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 354
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.04 E-value=2.2e+02 Score=22.75 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=13.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC
Q 011905 422 GLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
..+..|+.+-+.++++.+++.|.
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCC
Confidence 33455666666666666666553
No 355
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=27.75 E-value=1.1e+02 Score=23.09 Aligned_cols=121 Identities=13% Similarity=0.067 Sum_probs=56.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhc
Q 011905 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL---ACSVMIRELCLG 389 (475)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~ 389 (475)
+...++.|+.+....+++.-...-...+..-++ .+...+..|+.+-+ +.+.+.|..++.. -.+.|..+ +..
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A-~~~ 85 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSVV----EYLLQHGADVHAKDKGGLVPLHNA-CSY 85 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHH-HHT
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCC-HHHHHHHcChHHHH----HHHHhcCCCCCccCCCCCCHHHHH-HHc
Confidence 344567788877766664311111111111123 33444567776544 4444556554432 22344433 556
Q ss_pred CCHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011905 390 GQVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 448 (475)
|+.+- .+.+.+.|..+.. +..-++.+ ...+..|+.+ +++.+++.|..++.
T Consensus 86 ~~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~~ 136 (165)
T 3twr_A 86 GHYEV----AELLVKHGAVVNVADLWKFTPL-HEAAAKGKYE----ICKLLLQHGADPTK 136 (165)
T ss_dssp TCHHH----HHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred CcHHH----HHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCcc
Confidence 77664 4455556553321 22222333 3345667665 44445556655443
No 356
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.40 E-value=2.2e+02 Score=22.07 Aligned_cols=50 Identities=8% Similarity=0.112 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011905 290 ALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 339 (475)
+.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4455555555554332 3344455555555566666666666666555555
No 357
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.07 E-value=3.5e+02 Score=24.41 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=38.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKVVAGG----------------SVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
++..+....+.+++.+.++.+...- ...-......+...|...|+.++|..++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4556667788888888888764321 01112344556677778888888888888775
No 358
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.96 E-value=1.2e+02 Score=19.15 Aligned_cols=45 Identities=7% Similarity=0.041 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhc
Q 011905 97 YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 142 (475)
++.+++..+...-.+.++..++...+.| ..+..+|-.-.+..++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4455555555556667777777777766 55666665555555543
No 359
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.88 E-value=2.7e+02 Score=22.61 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=38.1
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 011905 347 LVVELV---RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-----VLEGFCLYEDIEKIGF 407 (475)
Q Consensus 347 li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~ 407 (475)
+|+++. +..+++.|+-.+.+|++.|-.|....-..++-+.-..|. +..|...++.....|.
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 444443 457888888888888888766655555555555544442 3345566666666664
No 360
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.62 E-value=4.1e+02 Score=24.74 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 011905 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 292 (475)
.+.+-|.++-. +.|++--...|..-.+.+...|++++|.++--...+ ++-.+..|.+.+-..=...|+..-.+.
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~---giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK---GILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG---GSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc---ccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 44554444432 344444444555556666677777777766554433 223444444444333333445555555
Q ss_pred HHHHHHHcC
Q 011905 293 ILDRMEALG 301 (475)
Q Consensus 293 ~~~~m~~~~ 301 (475)
+|..+.+.|
T Consensus 417 YF~~Ll~~g 425 (494)
T 1bpo_A 417 YFGILLDQG 425 (494)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHhccC
Confidence 555555554
No 361
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=24.70 E-value=48 Score=24.10 Aligned_cols=52 Identities=6% Similarity=-0.145 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011905 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
|.-.|...+..++.+-|.++++-+.+.| +...|.+++..|...=+++.++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g-----~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE-----KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC-----SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----chHHHHHHHHHHHhccChHHHHHH
Confidence 4445566677788888888888877766 567777777777777777777665
No 362
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.68 E-value=94 Score=25.69 Aligned_cols=16 Identities=0% Similarity=-0.093 Sum_probs=8.5
Q ss_pred HHhcCCHHHHHHHHHH
Q 011905 423 LCRKNHSVEAAKLARF 438 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~ 438 (475)
.++.|+.+-+.-+++.
T Consensus 228 A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 228 AAKEGKIEIFRHILQR 243 (256)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhC
Confidence 3456666555555444
No 363
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=24.43 E-value=2.3e+02 Score=21.32 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=8.9
Q ss_pred HHHHhcCCHhHHhhccc
Q 011905 456 EHLKKSGDEELITNLPK 472 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l~~ 472 (475)
....+.|+.+.++-+++
T Consensus 151 ~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 151 DISIDNGNEDLAEILQK 167 (169)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 33445566665555444
No 364
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=24.16 E-value=2.2e+02 Score=22.63 Aligned_cols=15 Identities=0% Similarity=0.078 Sum_probs=7.4
Q ss_pred HhcCChhHHHHHHHH
Q 011905 105 RIKQNPSIIIDVVEA 119 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~ 119 (475)
...|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 10 CMENEFFKVQELLHS 24 (228)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhc
Confidence 444555555555443
No 365
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.58 E-value=1.6e+02 Score=21.34 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=25.4
Q ss_pred HHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhccc
Q 011905 116 VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPE 157 (475)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 157 (475)
+|+.+....+.|++..--.-+..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455565655544433333333456677888888888877765
No 366
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.98 E-value=1.4e+02 Score=20.41 Aligned_cols=27 Identities=19% Similarity=-0.089 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
..+......+.+.|++++|++..++..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345566777888888888877655544
No 367
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.27 E-value=94 Score=23.08 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=6.6
Q ss_pred HhcCCHHHHHHHHHh
Q 011905 140 EKARLANEAMWVLRK 154 (475)
Q Consensus 140 ~~~~~~~~A~~~~~~ 154 (475)
++.|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 334444444444443
No 368
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.24 E-value=2.5e+02 Score=24.62 Aligned_cols=47 Identities=13% Similarity=-0.031 Sum_probs=21.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 387 CLGGQVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
+..|..+- .+.+.+.|..+.. |..-.+.+ ...++.|+.+-+.-+++.
T Consensus 219 ~~~g~~~~----v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 219 ILINWEDV----AMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HTTTCHHH----HHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred HHcCCHHH----HHHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 45566553 3444455543211 22222233 333456776666555554
No 369
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=22.15 E-value=2.7e+02 Score=26.64 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH
Q 011905 97 YNRACEMSR--IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174 (475)
Q Consensus 97 ~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 174 (475)
+...+..+. ...+.......++++..+=..-+.....-++..|.+.|-.+.|.++++.+-..-+. +...| ..+..|
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f 559 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANF 559 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHH
Q ss_pred HhcCChhHHHH
Q 011905 175 CEKGDMIAADE 185 (475)
Q Consensus 175 ~~~g~~~~a~~ 185 (475)
+++|+++.+..
T Consensus 560 ~rA~~~~~Vk~ 570 (570)
T 3f3f_C 560 SRAGKYELVKS 570 (570)
T ss_dssp -----------
T ss_pred HHcCChhhccC
No 370
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.88 E-value=1.5e+02 Score=20.37 Aligned_cols=35 Identities=26% Similarity=0.152 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 359 (475)
..+.|.++++.+..+|.. +|..++.++...|+.+-
T Consensus 52 ~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHHH
Confidence 455555555555554432 25555555544444433
No 371
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=21.66 E-value=2.8e+02 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=12.5
Q ss_pred ChhhHHHHHHHHHhcCC-HhHHhhcc
Q 011905 447 QGPYVDKIVEHLKKSGD-EELITNLP 471 (475)
Q Consensus 447 ~~~~~~~l~~~~~~~g~-~~~a~~l~ 471 (475)
+......+++.+.+.|- ++.+..++
T Consensus 131 ~~~~k~K~~~~L~rrGF~~~~I~~~l 156 (162)
T 3dfg_A 131 DLAQRRKAADLLARRGFDGNSIRLAT 156 (162)
T ss_dssp SHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 34445556666666663 33444443
No 372
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=21.54 E-value=1.1e+02 Score=23.35 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=9.3
Q ss_pred chHHHHHHhhcCCCcHHHhhh
Q 011905 31 PAERFYTHLQKNPNNIEKTLA 51 (475)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~~l~ 51 (475)
|.+.+.+.+.+...++..+..
T Consensus 36 Pv~DFk~lL~~~~~~~~~A~~ 56 (152)
T 1rw2_A 36 PAENFRVLVKQKKASFEEASN 56 (152)
T ss_dssp TTHHHHHHHHSSSSCHHHHHH
T ss_pred cHHHHHHHHHcCchhHHHHHH
Confidence 444555555443333444333
No 373
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=21.49 E-value=65 Score=23.46 Aligned_cols=53 Identities=8% Similarity=0.177 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHH
Q 011905 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWV 151 (475)
Q Consensus 96 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 151 (475)
.|...|+..+..++.+.|.++++-+.+.| +.+.|.+.+-.|...=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 35556666677777777777777777766 556666666666666555555543
No 374
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.35 E-value=2.9e+02 Score=21.46 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=74.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 207 (475)
+...-...+..+.+.+..+....+.+.+ . .++...-...+.++.+.|..+....+.+ +.. .++..+-...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~ 98 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWVRQSAAV 98 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHHHHHHHH
Confidence 4444444444444444422223333333 2 2455555566666666666544333333 332 356666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
++.+.++.+ +...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.++...|..
T Consensus 99 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-----d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 99 ALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK-----DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT-----CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc-----CCCHHHHHHHHHHHHHhCch
Confidence 666666643 3333333333 345555566666666666533 3344444443 24555555556666665543
Q ss_pred HHHHHHHHHHH
Q 011905 288 KEALGILDRME 298 (475)
Q Consensus 288 ~~a~~~~~~m~ 298 (475)
++...+..+.
T Consensus 169 -~~~~~L~~~l 178 (201)
T 3ltj_A 169 -RVRAAMEKLA 178 (201)
T ss_dssp -HHHHHHHHHH
T ss_pred -hHHHHHHHHH
Confidence 3444444444
No 375
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.30 E-value=2.1e+02 Score=21.33 Aligned_cols=15 Identities=13% Similarity=-0.057 Sum_probs=6.8
Q ss_pred HHhcCCHHHHHHHHH
Q 011905 139 CEKARLANEAMWVLR 153 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~ 153 (475)
.++.|+.+....+++
T Consensus 15 A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 15 AAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHTCHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHH
Confidence 334455544444443
No 376
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.15 E-value=1.4e+02 Score=21.87 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 011905 182 AADELMKGM 190 (475)
Q Consensus 182 ~a~~~~~~m 190 (475)
.|.++++.+
T Consensus 28 sa~ei~~~l 36 (131)
T 2o03_A 28 SAQELHDEL 36 (131)
T ss_dssp EHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 333333333
No 377
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.98 E-value=1.6e+02 Score=18.19 Aligned_cols=21 Identities=29% Similarity=0.192 Sum_probs=10.9
Q ss_pred cCChhHHHHHHHHhccCCCCC
Q 011905 177 KGDMIAADELMKGMGLIDLYP 197 (475)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~~~ 197 (475)
.|+++.|+..+-+|...+..|
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSC
T ss_pred CCCHHHHHHHHHcCcCCCCCC
Confidence 455555555555555444333
No 378
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.19 E-value=1.2e+02 Score=22.50 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=5.2
Q ss_pred hhHHHHHHHHhcc
Q 011905 180 MIAADELMKGMGL 192 (475)
Q Consensus 180 ~~~a~~~~~~m~~ 192 (475)
.-.|.++++.+.+
T Consensus 29 h~sa~eI~~~l~~ 41 (139)
T 3mwm_A 29 FRSAQELHDMLKH 41 (139)
T ss_dssp CEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3334444444433
No 379
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.10 E-value=2.3e+02 Score=19.70 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011905 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 320 (475)
|.++.+++..-|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4455556666666666666666666555544
Done!