Query         011905
Match_columns 475
No_of_seqs    627 out of 3060
Neff          11.2
Searched_HMMs 13730
Date          Mon Mar 25 17:42:50 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011905.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011905hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1w3ba_ a.118.8.1 (A:) O-GlcNA  99.9 9.6E-20   7E-24  168.9  46.6  377   71-463    12-388 (388)
  2 d1w3ba_ a.118.8.1 (A:) O-GlcNA  99.9 1.8E-19 1.3E-23  167.0  41.7  358  101-472     6-363 (388)
  3 d1fcha_ a.118.8.1 (A:) Peroxin  99.6 2.4E-13 1.7E-17  122.3  31.5  269  170-468    25-305 (323)
  4 d1fcha_ a.118.8.1 (A:) Peroxin  99.6 8.3E-13   6E-17  118.6  29.2  227  138-369    28-268 (323)
  5 d1hz4a_ a.118.8.2 (A:) Transcr  99.3 5.2E-09 3.8E-13   94.2  30.6  295  172-468    20-354 (366)
  6 d2h6fa1 a.118.6.1 (A:55-369) P  99.3   2E-09 1.5E-13   95.3  26.5  214  202-424    46-266 (315)
  7 d2onda1 a.118.8.7 (A:242-549)   99.2   8E-09 5.8E-13   91.3  26.5  190  249-442    79-270 (308)
  8 d1hz4a_ a.118.8.2 (A:) Transcr  99.2 3.3E-08 2.4E-12   88.7  31.0  300  135-434    18-355 (366)
  9 d2onda1 a.118.8.7 (A:242-549)   99.2 6.9E-09   5E-13   91.7  25.3  183  286-472    79-265 (308)
 10 d2h6fa1 a.118.6.1 (A:55-369) P  99.2 1.7E-08 1.3E-12   89.2  26.7  214   96-317    45-266 (315)
 11 d1xnfa_ a.118.8.1 (A:) Lipopro  99.1 5.9E-09 4.3E-13   89.6  20.6  198  235-443    38-239 (259)
 12 d1dcea1 a.118.6.1 (A:1-241,A:3  99.1   6E-10 4.3E-14  100.1  14.2  232  213-459    87-321 (334)
 13 d1dcea1 a.118.6.1 (A:1-241,A:3  99.0 1.8E-09 1.3E-13   96.8  14.6  264  143-424    43-321 (334)
 14 d1xnfa_ a.118.8.1 (A:) Lipopro  98.9 4.3E-08 3.1E-12   84.0  19.2   96  131-228    39-134 (259)
 15 d1qqea_ a.118.8.1 (A:) Vesicul  98.6 2.1E-06 1.5E-10   74.5  19.0  129  171-299    44-186 (290)
 16 d1hh8a_ a.118.8.1 (A:) Neutrop  98.6 4.8E-06 3.5E-10   67.1  19.2  123  173-300    14-149 (192)
 17 d1b89a_ a.118.1.3 (A:) Clathri  98.6 8.9E-05 6.5E-09   64.5  28.6  266  127-433    12-300 (336)
 18 d1hh8a_ a.118.8.1 (A:) Neutrop  98.5 4.7E-06 3.4E-10   67.2  18.6  122  137-263    13-149 (192)
 19 d1elwa_ a.118.8.1 (A:) Hop {Hu  98.5 2.5E-06 1.8E-10   62.5  15.1  105  347-456     9-113 (117)
 20 d1qqea_ a.118.8.1 (A:) Vesicul  98.5 4.3E-06 3.2E-10   72.5  18.1  166  205-370    43-228 (290)
 21 d1ouva_ a.118.18.1 (A:) Cystei  98.4 0.00037 2.7E-08   58.8  32.4  222  201-444     4-249 (265)
 22 d1elwa_ a.118.8.1 (A:) Hop {Hu  98.4 7.9E-06 5.7E-10   59.8  15.0   90  171-262    10-99  (117)
 23 d1a17a_ a.118.8.1 (A:) Protein  98.4 5.8E-06 4.3E-10   64.3  15.2   90  314-405    18-107 (159)
 24 d1ouva_ a.118.18.1 (A:) Cystei  98.3 0.00056 4.1E-08   57.7  29.9   49  355-406   196-248 (265)
 25 d1a17a_ a.118.8.1 (A:) Protein  98.3 9.9E-06 7.2E-10   63.0  15.2   88  173-262    19-106 (159)
 26 d2c2la1 a.118.8.1 (A:24-224) S  98.3 5.6E-06 4.1E-10   67.2  13.2   88  205-296    10-97  (201)
 27 d2c2la1 a.118.8.1 (A:24-224) S  98.3 5.7E-06 4.1E-10   67.2  12.8   97  163-261     3-99  (201)
 28 d1p5qa1 a.118.8.1 (A:258-427)   98.2 2.6E-05 1.9E-09   61.3  14.4   76  379-458    65-140 (170)
 29 d1hxia_ a.118.8.1 (A:) Peroxin  98.2 1.1E-05 8.2E-10   58.3  10.9   91  346-440    21-111 (112)
 30 d1nzna_ a.118.8.1 (A:) Mitocho  98.1 1.5E-05 1.1E-09   58.5  11.0   97  345-443     3-102 (122)
 31 d1hxia_ a.118.8.1 (A:) Peroxin  98.1 1.8E-05 1.3E-09   57.2  11.0   87  206-296    23-109 (112)
 32 d1nzna_ a.118.8.1 (A:) Mitocho  98.0 1.7E-05 1.2E-09   58.2  10.0   25  238-262    76-100 (122)
 33 d2fbna1 a.118.8.1 (A:22-174) P  98.0 0.00014 9.9E-09   55.8  15.0   79  377-459    68-146 (153)
 34 d1b89a_ a.118.1.3 (A:) Clathri  98.0  0.0045 3.3E-07   53.4  31.5  146   55-223    10-156 (336)
 35 d1ihga1 a.118.8.1 (A:197-365)   97.9 9.1E-05 6.6E-09   57.9  12.8   88  376-467    77-164 (169)
 36 d1p5qa1 a.118.8.1 (A:258-427)   97.9 0.00034 2.5E-08   54.5  15.7   79  343-425    64-142 (170)
 37 d1ya0a1 a.118.8.1 (A:1-497) SM  97.9 7.2E-06 5.3E-10   76.9   6.2  111  344-461   123-233 (497)
 38 d1elra_ a.118.8.1 (A:) Hop {Hu  97.9  0.0002 1.4E-08   52.9  13.1  107  344-453     7-117 (128)
 39 d2ff4a2 a.118.8.3 (A:105-283)   97.8 0.00036 2.6E-08   54.8  15.3  126  314-456    19-149 (179)
 40 d1kt1a1 a.118.8.1 (A:254-421)   97.7   0.001 7.6E-08   51.5  16.5   78  379-460    67-144 (168)
 41 d1elra_ a.118.8.1 (A:) Hop {Hu  97.7 0.00036 2.6E-08   51.4  13.1   92  277-369    10-107 (128)
 42 d1ya0a1 a.118.8.1 (A:1-497) SM  97.7 1.2E-05 8.7E-10   75.4   4.2   76  309-386   155-230 (497)
 43 d2fbna1 a.118.8.1 (A:22-174) P  97.7  0.0011 7.8E-08   50.5  15.0   61  344-405    70-130 (153)
 44 d2ff4a2 a.118.8.3 (A:105-283)   97.7 0.00076 5.5E-08   52.9  14.2  123  169-308    16-143 (179)
 45 d1ihga1 a.118.8.1 (A:197-365)   97.6 0.00082   6E-08   52.2  14.0   64  234-300    77-140 (169)
 46 d1kt1a1 a.118.8.1 (A:254-421)   97.5  0.0041   3E-07   48.0  16.9   61  309-370    67-127 (168)
 47 d1zbpa1 e.61.1.1 (A:2-265) Hyp  97.4 0.00022 1.6E-08   59.9   8.4   51  211-262     8-58  (264)
 48 d1zbpa1 e.61.1.1 (A:2-265) Hyp  97.4 9.8E-05 7.1E-09   62.2   5.7   51  141-192     8-58  (264)
 49 d1zu2a1 a.118.8.1 (A:1-145) Mi  97.3  0.0005 3.7E-08   51.9   8.1   36  141-177     9-44  (145)
 50 d1zu2a1 a.118.8.1 (A:1-145) Mi  97.1  0.0008 5.8E-08   50.7   8.1   49  392-443    57-116 (145)
 51 d2hr2a1 a.118.8.8 (A:2-157) Hy  97.0  0.0038 2.8E-07   47.4  11.4   95  348-442    16-129 (156)
 52 d2hr2a1 a.118.8.8 (A:2-157) Hy  97.0    0.01 7.3E-07   45.0  13.4   58  241-298    16-82  (156)
 53 d1tjca_ a.118.8.1 (A:) Prolyl   96.9  0.0091 6.6E-07   40.7  11.0   71  381-452    10-84  (95)
 54 d1wy6a1 a.118.20.1 (A:7-167) H  96.7   0.054 3.9E-06   38.0  15.3   63  344-407    89-151 (161)
 55 d1klxa_ a.118.18.1 (A:) Cystei  96.2    0.11 7.8E-06   37.7  14.1   81  355-443    37-125 (133)
 56 d1tjca_ a.118.8.1 (A:) Prolyl   96.1   0.028   2E-06   38.2   9.8   63  344-406     8-76  (95)
 57 d1klxa_ a.118.18.1 (A:) Cystei  96.0    0.15 1.1E-05   36.8  14.0   46  214-262    38-87  (133)
 58 d1wy6a1 a.118.20.1 (A:7-167) H  95.2     0.3 2.2E-05   34.2  15.3  140  210-373    13-152 (161)
 59 d1v54e_ a.118.11.1 (E:) Cytoch  92.1    0.56 4.1E-05   31.0   8.0   69  103-172    14-83  (105)
 60 d1qsaa1 a.118.5.1 (A:1-450) 70  90.7     5.1 0.00037   35.3  34.8  345   87-473    65-438 (450)
 61 d2pqrb1 a.118.8.1 (B:5-128) Mi  89.9     2.2 0.00016   29.8  12.0   69  373-443    32-103 (124)
 62 d2pqrb1 a.118.8.1 (B:5-128) Mi  89.2     2.5 0.00018   29.5  10.5   50  321-370    53-102 (124)
 63 d1v54e_ a.118.11.1 (E:) Cytoch  88.0     2.4 0.00018   27.9   9.6   50  356-405    21-70  (105)
 64 d1qsaa1 a.118.5.1 (A:1-450) 70  87.0     9.2 0.00067   33.5  34.1  311   92-439   100-439 (450)
 65 d1bpoa1 a.118.1.4 (A:331-487)   76.8      11 0.00078   27.1  10.9  109  108-221    13-121 (157)
 66 d1ug3a1 a.118.1.14 (A:1235-142  63.5      12 0.00085   28.3   7.3   23  275-297    14-36  (193)
 67 d2f6ma1 a.2.17.1 (A:322-385) V  61.0     6.3 0.00046   23.4   4.0   44  416-460     4-47  (64)
 68 d1bpoa1 a.118.1.4 (A:331-487)   49.9      40  0.0029   24.0  10.7  110  212-328    12-121 (157)
 69 d1khda1 a.46.2.1 (A:12-80) Ant  47.9      24  0.0018   21.0   8.0    6  254-259    21-26  (69)
 70 d2nsza1 a.118.1.14 (A:322-450)  47.6      39  0.0028   23.2   8.7   24  133-156    11-34  (129)
 71 d1uoha_ d.211.1.1 (A:) 26S pro  47.3      27   0.002   26.5   7.3  186  239-448     5-197 (223)
 72 d2nsza1 a.118.1.14 (A:322-450)  46.9      40  0.0029   23.2  10.5   64  238-304    11-76  (129)
 73 d1mzba_ a.4.5.42 (A:) Ferric u  46.8      27  0.0019   24.2   6.5   61  401-464     6-67  (134)
 74 d2d2sa1 a.118.17.2 (A:525-753)  43.2      65  0.0048   24.6   8.9   19  136-154    19-37  (229)
 75 d2f6ma1 a.2.17.1 (A:322-385) V  43.2      13 0.00094   22.0   3.3   27  168-194     5-31  (64)
 76 d1mzba_ a.4.5.42 (A:) Ferric u  41.1      31  0.0022   23.9   6.0   20  322-341    32-51  (134)
 77 d2d2sa1 a.118.17.2 (A:525-753)  38.5      78  0.0057   24.1   9.1   21  170-190    18-38  (229)
 78 d1sxjd1 a.80.1.1 (D:263-353) R  37.6      44  0.0032   21.0   5.9   47  379-429     6-52  (91)
 79 d1sxjc1 a.80.1.1 (C:239-333) R  36.6      46  0.0033   21.2   5.9   35   57-91      1-35  (95)
 80 d1khda1 a.46.2.1 (A:12-80) Ant  36.4      39  0.0028   20.0   7.9   61  202-263     2-64  (69)
 81 d2crba1 a.7.16.1 (A:8-90) Nucl  36.0      45  0.0033   20.6   5.8   39  415-453    10-53  (83)
 82 d1uoha_ d.211.1.1 (A:) 26S pro  35.8      51  0.0037   24.7   7.3   14  105-118    11-24  (223)
 83 d1ug3a1 a.118.1.14 (A:1235-142  35.7      40  0.0029   25.1   6.3   62  132-195    13-76  (193)
 84 d1h6pa_ a.146.1.1 (A:) TRF2 {H  35.2      60  0.0044   24.0   6.7   22  241-262   120-141 (203)
 85 d1h6pa_ a.146.1.1 (A:) TRF2 {H  32.2      46  0.0034   24.7   5.6   22  420-441   120-141 (203)
 86 d1u9pa1 a.43.1.1 (A:72-107) Ar  25.2      38  0.0027   16.3   3.5   20  229-248    15-34  (36)
 87 d3bgea1 a.80.1.2 (A:251-434) U  24.4 1.2E+02   0.009   22.1   8.6   55  353-407    16-75  (184)

No 1  
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.91  E-value=9.6e-20  Score=168.91  Aligned_cols=377  Identities=14%  Similarity=0.032  Sum_probs=288.3

Q ss_pred             CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 011905           71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW  150 (475)
Q Consensus        71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~  150 (475)
                      .++.+.|.+.+.......  +.+...+..+...+...|+++.|...++...+.. +-+..++..+..++.+.|++++|+.
T Consensus        12 ~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~   88 (388)
T d1w3ba_          12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE   88 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccc
Confidence            456677777666654432  2345566666677777777777777777776654 4456677777777777777777777


Q ss_pred             HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011905          151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC  230 (475)
Q Consensus       151 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  230 (475)
                      .+....+.. +.+...+..........+....+........... .................+....+...+....... 
T Consensus        89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  165 (388)
T d1w3ba_          89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-  165 (388)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred             ccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-
Confidence            777776543 2344444444444555555555555544443332 3344445555666667777888888887777654 


Q ss_pred             CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011905          231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS  310 (475)
Q Consensus       231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  310 (475)
                      +.+...+..+...+...|++++|...+++..+..   +.+...|..+...+...|++++|+..++.....+ +.+...+.
T Consensus       166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  241 (388)
T d1w3ba_         166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG  241 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC---cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence            3367788888999999999999999999988753   3467788899999999999999999999988764 34667788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905          311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG  390 (475)
Q Consensus       311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  390 (475)
                      .+...+.+.|++++|...|++..+.... +..++..+...+...|++++|.+.++...... +.+...+..+...+...|
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  319 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCC
Confidence            8889999999999999999999887543 56788999999999999999999999988753 456788888889999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011905          391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD  463 (475)
Q Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~  463 (475)
                      ++++|...+++..+..  | .+..+|..+..+|.+.|++++|.+.|+++++.. |-++..+..+..+|.+.||
T Consensus       320 ~~~~A~~~~~~al~~~--p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         320 NIEEAVRLYRKALEVF--P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CHHHHHHHHHHHTTSC--T-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            9999999999998754  3 467889999999999999999999999999876 6678889999999998886


No 2  
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.89  E-value=1.8e-19  Score=166.96  Aligned_cols=358  Identities=13%  Similarity=0.021  Sum_probs=293.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh
Q 011905          101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM  180 (475)
Q Consensus       101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~  180 (475)
                      ....-+.|+++.|.+.++.+.+.. +-+...+..+..++.+.|++++|...|++..+.. +-+..+|..+..++.+.|++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence            344566799999999999998764 4568888889999999999999999999988764 34678899999999999999


Q ss_pred             hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011905          181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM  260 (475)
Q Consensus       181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  260 (475)
                      ++|.+.+....... +.+...+..........+....+............ ................+....+...+...
T Consensus        84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence            99999999988755 44555555555566666666666666665555433 34555566677778888899999988888


Q ss_pred             HhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011905          261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS  340 (475)
Q Consensus       261 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  340 (475)
                      ....   +.+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++.....+.. +
T Consensus       162 ~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~  236 (388)
T d1w3ba_         162 IETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H  236 (388)
T ss_dssp             HHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred             hccC---cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-H
Confidence            7743   4567788888899999999999999999988763 335678888999999999999999999999886544 5


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905          341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL  420 (475)
Q Consensus       341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li  420 (475)
                      ...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|.+.++......   +.+...+..+.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~  312 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLA  312 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC---CccchhhhHHH
Confidence            6678888999999999999999999998763 2356788889999999999999999999998865   34778899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905          421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK  472 (475)
Q Consensus       421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~  472 (475)
                      ..+.+.|++++|++.+++.++.. |.++..+..+..++.+.|++++|.+.++
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~  363 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK  363 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999998876 6677889999999999999999987664


No 3  
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.65  E-value=2.4e-13  Score=122.26  Aligned_cols=269  Identities=13%  Similarity=-0.009  Sum_probs=172.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011905          170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS  249 (475)
Q Consensus       170 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~  249 (475)
                      ....+.+.|++++|...|+++.+.. +-+..+|..+..++...|++++|...|.+..+... -+...+..+...|...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence            4455666777777777777766543 33456666666777777777777777776665432 245666666666777777


Q ss_pred             hHHHHHHHHHHHhcCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011905          250 MERALELLGEMEKEGGDCSPNVVTY-TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL  328 (475)
Q Consensus       250 ~~~a~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~  328 (475)
                      +++|.+.+++.....    |+.... ........                    ..+.......+..+...+.+.+|...
T Consensus       103 ~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (323)
T d1fcha_         103 QRQACEILRDWLRYT----PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKEL  158 (323)
T ss_dssp             HHHHHHHHHHHHHTS----TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhc----cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHH
Confidence            777777776666531    221110 00000000                    00000111122233445567778888


Q ss_pred             HHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905          329 IDKVVAGGS-VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF  407 (475)
Q Consensus       329 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  407 (475)
                      +....+... ..+..++..+...+...|++++|+..+++..+.. +-+...+..+...+...|++++|.+.+++..+.. 
T Consensus       159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-  236 (323)
T d1fcha_         159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-  236 (323)
T ss_dssp             HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-
Confidence            877765433 2345677788888889999999999999887653 2246778888888999999999999999988864 


Q ss_pred             CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------CCCChhhHHHHHHHHHhcCCHhHHh
Q 011905          408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR----------IWLQGPYVDKIVEHLKKSGDEELIT  468 (475)
Q Consensus       408 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~  468 (475)
                        +.+..+|..+..+|.+.|++++|++.|++.++..          .......+..+..++...|+.+.+.
T Consensus       237 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         237 --PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             --hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence              2367788889999999999999999999888631          1223345666777777777776554


No 4  
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.60  E-value=8.3e-13  Score=118.63  Aligned_cols=227  Identities=12%  Similarity=0.035  Sum_probs=121.0

Q ss_pred             HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011905          138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED  217 (475)
Q Consensus       138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~  217 (475)
                      .+.+.|++++|+..|+++.+.. +-+...|..+..++...|+++.|...|++..+.. +-+...|..+...+...|++++
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~  105 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ  105 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccc
Confidence            3445555555555555555433 2234455555555555555555555555554432 2234445555555555555555


Q ss_pred             HHHHHHHHHHCCCC--------------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011905          218 ACGLFKVMKRHGCA--------------ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG  283 (475)
Q Consensus       218 a~~~~~~m~~~g~~--------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~  283 (475)
                      |.+.++........              .+.......+..+...+.+.+|.+.+.+..+... -..+..++..+...+..
T Consensus       106 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p-~~~~~~~~~~l~~~~~~  184 (323)
T d1fcha_         106 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP-TSIDPDVQCGLGVLFNL  184 (323)
T ss_dssp             HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST-TSCCHHHHHHHHHHHHH
T ss_pred             cccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh-cccccccchhhHHHHHH
Confidence            55555555443110              0000111112223334455666666666555321 12344556666666667


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905          284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL  363 (475)
Q Consensus       284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  363 (475)
                      .|++++|+..+++..... +-+...|..+..++.+.|++++|.+.|+..++.... +..+|..+..+|.+.|++++|++.
T Consensus       185 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~  262 (323)
T d1fcha_         185 SGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEH  262 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHH
Confidence            777777777776665542 224555666666666777777777777666654322 345566666667777777777777


Q ss_pred             HHHHHH
Q 011905          364 FSKMLA  369 (475)
Q Consensus       364 ~~~m~~  369 (475)
                      |++.++
T Consensus       263 ~~~al~  268 (323)
T d1fcha_         263 FLEALN  268 (323)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654


No 5  
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
Probab=99.28  E-value=5.2e-09  Score=94.22  Aligned_cols=295  Identities=13%  Similarity=0.027  Sum_probs=146.9

Q ss_pred             HHHHhcCChhHHHHHHHHhccCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CcCHHHHHHHH
Q 011905          172 RLFCEKGDMIAADELMKGMGLIDLYPD-----IITYVSMIKGFCNAGRLEDACGLFKVMKRHG----C-AANLVAYSALL  241 (475)
Q Consensus       172 ~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~-~~~~~~~~~ll  241 (475)
                      ..+...|++++|++++++..... +.+     ...+..+...+...|++++|...+++..+..    . ......+..+.
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            33445555555555555544321 111     1233444455555555555555555443311    0 00122334444


Q ss_pred             HHHHhcCChHHHHHHHHHHHhc----CCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHH
Q 011905          242 DGICRLGSMERALELLGEMEKE----GGDCSP-NVVTYTSVIQIFCGKGMMKEALGILDRMEALG----CAPNRVTISTL  312 (475)
Q Consensus       242 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~l  312 (475)
                      ..+...|++..+...+......    .....+ ....+..+...+...|+++.+...+.......    .......+...
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  178 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            5555666666666655554321    000011 12233444555666666666666665554321    11123334444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 011905          313 IKGFCVEGNLDEAYQLIDKVVAG----GSVS--SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP---DGLACSVMI  383 (475)
Q Consensus       313 i~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li  383 (475)
                      ...+...++...+...+......    +..+  ....+..+...+...|++++|...+.+..+.....   ....+..+.
T Consensus       179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la  258 (366)
T d1hz4a_         179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  258 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            55555666666666666554331    1111  12234445556667777777777776655432211   123344456


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC----CChhhH
Q 011905          384 RELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIW----LQGPYV  451 (475)
Q Consensus       384 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~----~~~~~~  451 (475)
                      .++...|++++|...++++...    +..| ....++..+...|.+.|++++|.+.+++.++.    |..    .....+
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~  337 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMS-DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM  337 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence            6677777777777777766532    2222 23455666777777777777777777776543    211    112234


Q ss_pred             HHHHHHHHhcCCHhHHh
Q 011905          452 DKIVEHLKKSGDEELIT  468 (475)
Q Consensus       452 ~~l~~~~~~~g~~~~a~  468 (475)
                      ..++..+...++.++++
T Consensus       338 ~~~~~~l~~~~~l~e~e  354 (366)
T d1hz4a_         338 AQQLRQLIQLNTLPELE  354 (366)
T ss_dssp             HHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHhcCCChHHH
Confidence            44555566666555543


No 6  
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.27  E-value=2e-09  Score=95.33  Aligned_cols=214  Identities=11%  Similarity=-0.010  Sum_probs=101.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Q 011905          202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG-SMERALELLGEMEKEGGDCSPNVVTYTSVIQI  280 (475)
Q Consensus       202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~  280 (475)
                      |+.+...+.+.+..++|+++++.+++... -+...|+....++...| ++++|++.++...+..   +-+..+|..+...
T Consensus        46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~---p~~~~a~~~~~~~  121 (315)
T d2h6fa1          46 YDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH---HhhhhHHHHHhHH
Confidence            33333444444555555555555554421 13444444444444443 2555555555554432   2344455555555


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----
Q 011905          281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR----  356 (475)
Q Consensus       281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----  356 (475)
                      +.+.|++++|++.++.+.+.. +-+...|..+...+.+.|++++|...++.+++.++. +...|+.+...+.+.+.    
T Consensus       122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence            555555555555555555432 223445555555555555555555555555554332 33344444444433332    


Q ss_pred             --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905          357 --LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC  424 (475)
Q Consensus       357 --~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~  424 (475)
                        +++|++.+.+.++.. +-+...|..+...+. ....+++.+.++...+....+ .+...+..++..|.
T Consensus       200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTC-CCHHHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCc-CCHHHHHHHHHHHH
Confidence              456666666665442 123444444433332 333455666666665543222 13334444555543


No 7  
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.19  E-value=8e-09  Score=91.27  Aligned_cols=190  Identities=12%  Similarity=0.011  Sum_probs=135.0

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011905          249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL  328 (475)
Q Consensus       249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~  328 (475)
                      ..++|..+|++..+.  ..+.+...|...+..+...|+.++|..+|+.+.+.........|...+..+.+.|+++.|.++
T Consensus        79 ~~~~a~~i~~ral~~--~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          79 FSDEAANIYERAIST--LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             chHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence            457778888887762  234556677777778888888888888888887654333345677888888888888888888


Q ss_pred             HHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905          329 IDKVVAGGSVSSGGCYSSLVVE-LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF  407 (475)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  407 (475)
                      |+.+++.+... ...|...... +...|+.+.|..+|+.+.+.. ..+...+...+..+...|+++.|+.+|++..+...
T Consensus       157 ~~~al~~~~~~-~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         157 FKKAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHhCCCc-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            88887765432 2333333322 334578888888888888752 33467788888888888899999999998877642


Q ss_pred             -CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905          408 -LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK  442 (475)
Q Consensus       408 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  442 (475)
                       .|......|...+..-...|+.+.+.++++++.+.
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             22223457787777777889999988888887664


No 8  
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
Probab=99.18  E-value=3.3e-08  Score=88.72  Aligned_cols=300  Identities=12%  Similarity=0.055  Sum_probs=194.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHhcccCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC-C----ChhhHHHH
Q 011905          135 IFNLCEKARLANEAMWVLRKMPEFDLRPD----TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-P----DIITYVSM  205 (475)
Q Consensus       135 li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~----~~~~~~~l  205 (475)
                      ....+...|++++|++++++..+.....+    ...+..+..++...|++++|.+.+++....... +    ....+..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            34466778888888888888766431111    235667778888888988888888877542111 1    12345556


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC----CCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCcHHHHHH
Q 011905          206 IKGFCNAGRLEDACGLFKVMKRH----GCAA---NLVAYSALLDGICRLGSMERALELLGEMEKEGG--DCSPNVVTYTS  276 (475)
Q Consensus       206 i~~~~~~~~~~~a~~~~~~m~~~----g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~  276 (475)
                      ...+...|++..+...+......    +...   ....+..+...+...|+++.+...+........  +.......+..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  177 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  177 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            67778888988888888766531    1111   123455677788889999999999888776321  11223445556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHH
Q 011905          277 VIQIFCGKGMMKEALGILDRMEAL----GCAPN--RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSL  347 (475)
Q Consensus       277 li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l  347 (475)
                      ....+...++...+...+.+....    +..+.  ...+..+...+...|+++.|...++.........   ....+..+
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  257 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  257 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            667778888888888888765432    11111  2334556667788899999999998876543322   23445667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--CchhhH
Q 011905          348 VVELVRTKRLKEAEKLFSKMLA----SGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSS--VDSDIH  416 (475)
Q Consensus       348 i~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~  416 (475)
                      ...+...|++++|...+++...    .+..|+ ...+..+...|...|++++|.+.+++..+.    |....  ......
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~  337 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM  337 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence            8889999999999999988763    344443 345667778889999999999999987653    21100  011223


Q ss_pred             HHHHHHHHhcCCHHHHHH
Q 011905          417 SVLLLGLCRKNHSVEAAK  434 (475)
Q Consensus       417 ~~li~~~~~~g~~~~A~~  434 (475)
                      ..++..+...++.+++.+
T Consensus       338 ~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         338 AQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHhcCCChHHHH
Confidence            444455555565555543


No 9  
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.18  E-value=6.9e-09  Score=91.70  Aligned_cols=183  Identities=13%  Similarity=0.039  Sum_probs=146.1

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905          286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS  365 (475)
Q Consensus       286 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  365 (475)
                      ..++|..+|++..+...+.+...+...+....+.|+++.|..+|+.+++........+|...+..+.+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45788899999887655556677888888899999999999999999986655445678999999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 011905          366 KMLASGVKPDGLACSVMIR-ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR-  443 (475)
Q Consensus       366 ~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-  443 (475)
                      ++.+.+.. +...|..... -+...|+.+.|..+|+.+.+..   +.+...|...+..+.+.|+.+.|..+|++.++.. 
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~---p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            99876432 3333333332 2345689999999999999874   2367899999999999999999999999999875 


Q ss_pred             CCCC--hhhHHHHHHHHHhcCCHhHHhhccc
Q 011905          444 IWLQ--GPYVDKIVEHLKKSGDEELITNLPK  472 (475)
Q Consensus       444 ~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~  472 (475)
                      ..|.  ...|...+..-...|+.+.+.++.+
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~  265 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            2332  3478888888889999999888765


No 10 
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.15  E-value=1.7e-08  Score=89.19  Aligned_cols=214  Identities=11%  Similarity=0.021  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHhcccCCCCCCHhhHHHHHHHH
Q 011905           96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFDLRPDTIIYNNVIRLF  174 (475)
Q Consensus        96 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~  174 (475)
                      .|+.+..++...+..++|+++++.+.+.+ |-+...|+....++...| ++++|+..++...+.. +-+..+|+.+...+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence            44455556777788899999999998876 667778888888877765 5899999999887754 34788899999999


Q ss_pred             HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC-----
Q 011905          175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS-----  249 (475)
Q Consensus       175 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-----  249 (475)
                      .+.|++++|++.++++.+.. +.+...|..+...+.+.|++++|++.++.+.+.... +...|+.+...+.+.+.     
T Consensus       123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence            99999999999999988755 556888888999999999999999999999887533 67778777766666554     


Q ss_pred             -hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 011905          250 -MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFC  317 (475)
Q Consensus       250 -~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~  317 (475)
                       +++|++.+.+..+..   +.+...|+.+...+.. ...+++.+.++...+....+ +...+..+...|.
T Consensus       201 ~~~~ai~~~~~al~~~---P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLV---PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHhC---CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence             578888888877753   4466777766555444 44577777777766543222 3445555555553


No 11 
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}
Probab=99.10  E-value=5.9e-09  Score=89.55  Aligned_cols=198  Identities=9%  Similarity=-0.116  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011905          235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK  314 (475)
Q Consensus       235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  314 (475)
                      .+|..+..+|.+.|++++|.+.|++..+..   |-+..+|+.+..+|.+.|++++|+..|++..+.. +-+..++..+..
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~  113 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI  113 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccC---CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHH
Confidence            345556666777777777777777776642   3456667777777777777777777777766643 223455666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 011905          315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG----  390 (475)
Q Consensus       315 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----  390 (475)
                      ++...|++++|...|+..++.... +......+..++.+.+..+.+..+........  ++...+. ++..+....    
T Consensus       114 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~  189 (259)
T d1xnfa_         114 ALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQT  189 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHH
Confidence            777777777777777777665432 23333333344445555444444444444332  1111121 112111111    


Q ss_pred             CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905          391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR  443 (475)
Q Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  443 (475)
                      ..+.+...+.......  | ....+|..+...|...|++++|.+.|++.+...
T Consensus       190 ~~~~~~~~~~~~~~~~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         190 LMERLKADATDNTSLA--E-HLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             HHHHHHHHCCSHHHHH--H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhhcC--c-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            1222222211111110  1 133466777888888899999999998888765


No 12 
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.09  E-value=6e-10  Score=100.06  Aligned_cols=232  Identities=11%  Similarity=-0.006  Sum_probs=119.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHH-HHHHHHhcCCHHH
Q 011905          213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTS-VIQIFCGKGMMKE  289 (475)
Q Consensus       213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~  289 (475)
                      |++++|+..++...+.. +-+...|..+..++...+  ++++|...+.++.+..   +++...+.. ....+...+.+++
T Consensus        87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC---chhhhhhhhHHHHHHHhccccHH
Confidence            33555666666655543 224445555544444443  3566666666665532   233444332 2344455566666


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905          290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA  369 (475)
Q Consensus       290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  369 (475)
                      |+..++.....+. -+...|..+..++.+.|++++|...+....+..  |  . ...+...+...+..+++...+.....
T Consensus       163 Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~--~-~~~~~~~~~~l~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         163 ELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--L--K-ELELVQNAFFTDPNDQSAWFYHRWLL  236 (334)
T ss_dssp             HHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--H--H-HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--H--H-HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            6666666555432 245555556666666666555443332222110  0  0 11122233444555556666665554


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011905          370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP  449 (475)
Q Consensus       370 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  449 (475)
                      .. .++...+..+...+...|+.++|...+.+..+..   +.+..+|..+...+.+.|++++|++.++++++.. |.+..
T Consensus       237 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~  311 (334)
T d1dcea1         237 GR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN---KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAA  311 (334)
T ss_dssp             SC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHH
T ss_pred             hC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC---chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHH
Confidence            42 2233344444555555666666666666665543   2245566666667777777777777777776665 33445


Q ss_pred             hHHHHHHHHH
Q 011905          450 YVDKIVEHLK  459 (475)
Q Consensus       450 ~~~~l~~~~~  459 (475)
                      .|..+...+.
T Consensus       312 y~~~L~~~~~  321 (334)
T d1dcea1         312 YLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555544444


No 13 
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.02  E-value=1.8e-09  Score=96.76  Aligned_cols=264  Identities=8%  Similarity=-0.037  Sum_probs=177.3

Q ss_pred             CCHHHHHHHHHhcccCCCCCC-HhhHHHHHHH----------HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011905          143 RLANEAMWVLRKMPEFDLRPD-TIIYNNVIRL----------FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN  211 (475)
Q Consensus       143 ~~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~----------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  211 (475)
                      +..++|++++++..+..  |+ ...|+..-..          +...|++++|+.+++...+.. +.+...|..+..++..
T Consensus        43 ~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence            33467777777776543  33 3344332222          223345778888888877654 4456667766666665


Q ss_pred             cC--CHHHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHH
Q 011905          212 AG--RLEDACGLFKVMKRHGCAANLVAYS-ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK  288 (475)
Q Consensus       212 ~~--~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  288 (475)
                      .+  ++++|...+..+.+.. +++...+. .....+...+.+++|++.++.+.+..   +-+...|+.+..++.+.|+++
T Consensus       120 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~  195 (334)
T d1dcea1         120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQP  195 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCC
T ss_pred             hccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHH
Confidence            54  4788888888887764 23455544 44467777889999999998888753   457788888888888888888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905          289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML  368 (475)
Q Consensus       289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  368 (475)
                      +|...+....+.  .|+   .......+...+..+++...+......... +...+..+...+...|+.++|...+.+..
T Consensus       196 ~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  269 (334)
T d1dcea1         196 DSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELE  269 (334)
T ss_dssp             CSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            776655443332  111   122333455667777788888877766543 34456667777788899999999998887


Q ss_pred             HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905          369 ASGVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC  424 (475)
Q Consensus       369 ~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~  424 (475)
                      +.  .| +...+..+...+...|+.++|.+.++++.+..  | .+...|..+...+.
T Consensus       270 ~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P-~~~~y~~~L~~~~~  321 (334)
T d1dcea1         270 PE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--P-MRAAYLDDLRSKFL  321 (334)
T ss_dssp             TT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--G-GGHHHHHHHHHHHH
T ss_pred             hh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--c-ccHHHHHHHHHHHh
Confidence            55  33 34667778888899999999999999999874  2 35566776655554


No 14 
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}
Probab=98.93  E-value=4.3e-08  Score=83.98  Aligned_cols=96  Identities=13%  Similarity=-0.017  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011905          131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC  210 (475)
Q Consensus       131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  210 (475)
                      +|..+...|.+.|++++|++.|++..+.. +-+..+|+.+..++.+.|++++|++.|+++.+.. +-+..++..+..++.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence            33334445555555555555555555432 2344555555555555555555555555555432 223444555555555


Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 011905          211 NAGRLEDACGLFKVMKRH  228 (475)
Q Consensus       211 ~~~~~~~a~~~~~~m~~~  228 (475)
                      ..|++++|...|+...+.
T Consensus       117 ~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhh
Confidence            555555555555555544


No 15 
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.59  E-value=2.1e-06  Score=74.54  Aligned_cols=129  Identities=12%  Similarity=0.034  Sum_probs=59.9

Q ss_pred             HHHHHhcCChhHHHHHHHHhccC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHH
Q 011905          171 IRLFCEKGDMIAADELMKGMGLI----DLYP-DIITYVSMIKGFCNAGRLEDACGLFKVMKRH----GC-AANLVAYSAL  240 (475)
Q Consensus       171 l~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~l  240 (475)
                      ...|...|++++|.+.|.+....    +-++ -..+|..+..+|.+.|++++|.+.++...+.    |- .....++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            44566666777777666665431    1011 1234555566666666666666666544331    10 0112233344


Q ss_pred             HHHHHh-cCChHHHHHHHHHHHhcC--CCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905          241 LDGICR-LGSMERALELLGEMEKEG--GDCSP-NVVTYTSVIQIFCGKGMMKEALGILDRMEA  299 (475)
Q Consensus       241 l~~~~~-~g~~~~a~~~~~~~~~~~--~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  299 (475)
                      ...|.. .|++++|.+.+.+..+..  .+.++ -..++..+...+...|++++|+..|++...
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            444432 355666665555543210  00000 122344445555555555555555555443


No 16 
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.56  E-value=4.8e-06  Score=67.12  Aligned_cols=123  Identities=14%  Similarity=0.008  Sum_probs=64.1

Q ss_pred             HHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHH
Q 011905          173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER  252 (475)
Q Consensus       173 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~  252 (475)
                      .+...|+++.|++.|+++.    +|+..+|..+..++...|++++|++.|++.++... -+...|..+..+|.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHHH
Confidence            3445555666655555432    34455555555555666666666666665555432 245555555566666666666


Q ss_pred             HHHHHHHHHhcCCC------------CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905          253 ALELLGEMEKEGGD------------CSP-NVVTYTSVIQIFCGKGMMKEALGILDRMEAL  300 (475)
Q Consensus       253 a~~~~~~~~~~~~~------------~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  300 (475)
                      |.+.|++......+            ... ...++..+..++.+.|++++|.+.++.....
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            66665555431100            000 1223344455566666666666666655544


No 17 
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}
Probab=98.56  E-value=8.9e-05  Score=64.49  Aligned_cols=266  Identities=9%  Similarity=0.031  Sum_probs=141.0

Q ss_pred             cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905          127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI  206 (475)
Q Consensus       127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li  206 (475)
                      |+..--..+...|.+.|.++.|..+|..+..         |..++..+.+.++++.|.+++.+.      -+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence            3444444566777788888888888877654         667777778888888887777654      2456777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011905          207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM  286 (475)
Q Consensus       207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  286 (475)
                      ..+.+......+     .+...+...+......++..|-..|.+++...+++......   +.+...++-++..|++.+ 
T Consensus        77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~---~~~~~~~~~L~~lyak~~-  147 (336)
T d1b89a_          77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFK-  147 (336)
T ss_dssp             HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTC-
T ss_pred             HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC---ccchHHHHHHHHHHHHhC-
Confidence            777776665443     22233334456666677888888888888888888765421   356667777777777754 


Q ss_pred             HHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011905          287 MKEALGILDRMEALGCAPNRV----------TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR  356 (475)
Q Consensus       287 ~~~a~~~~~~m~~~~~~p~~~----------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  356 (475)
                      .++..+.++...   -..|..          .|..++-.|.+.|.++.|..+.   .++  .++..-....+..+.+.++
T Consensus       148 ~~kl~e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N  219 (336)
T d1b89a_         148 PQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVAN  219 (336)
T ss_dssp             HHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSS
T ss_pred             hHHHHHHHHhcc---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCC
Confidence            333333333221   111111          1233334444444444443332   121  1222224445566666666


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-------------HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905          357 LKEAEKLFSKMLASGVKPDGLACSVMIRE-------------LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL  423 (475)
Q Consensus       357 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~-------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~  423 (475)
                      ++...++.....+.  .|  ...+.++..             +.+.+++.....+++...+.+     +..+.+++...|
T Consensus       220 ~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n-----~~~vn~al~~ly  290 (336)
T d1b89a_         220 VELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN-----NKSVNESLNNLF  290 (336)
T ss_dssp             THHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC-----hHHHHHHHHHHH
Confidence            66666655555542  23  223333333             344444444555555544433     345777777888


Q ss_pred             HhcCCHHHHH
Q 011905          424 CRKNHSVEAA  433 (475)
Q Consensus       424 ~~~g~~~~A~  433 (475)
                      ...++++.-.
T Consensus       291 ie~~d~~~l~  300 (336)
T d1b89a_         291 ITEEDYQALR  300 (336)
T ss_dssp             HHTTCHHHHH
T ss_pred             hCcchhHHHH
Confidence            8877765433


No 18 
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.54  E-value=4.7e-06  Score=67.18  Aligned_cols=122  Identities=11%  Similarity=-0.022  Sum_probs=95.4

Q ss_pred             HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905          137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE  216 (475)
Q Consensus       137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~  216 (475)
                      ..+...|++++|++.|+++.    +|+..+|..+..++...|++++|++.|++..+.+ +.+...|..+..++.+.|+++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence            45567888999998888764    3677788888888889999999999998888765 556778888888888899999


Q ss_pred             HHHHHHHHHHHCCC--------------Cc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011905          217 DACGLFKVMKRHGC--------------AA-NLVAYSALLDGICRLGSMERALELLGEMEKE  263 (475)
Q Consensus       217 ~a~~~~~~m~~~g~--------------~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  263 (475)
                      +|+..|++......              .+ ...++..+..++.+.|++++|.+.+....+.
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99888888765310              11 1355667788899999999999999988873


No 19 
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.52  E-value=2.5e-06  Score=62.55  Aligned_cols=105  Identities=10%  Similarity=-0.074  Sum_probs=79.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011905          347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK  426 (475)
Q Consensus       347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  426 (475)
                      -...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|+..++...+.+   +.+...|..+..++...
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc---cchhhHHHHHHHHHHHc
Confidence            3456778888888888888888653 3356678888888888888888888888888865   24777888888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905          427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVE  456 (475)
Q Consensus       427 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~  456 (475)
                      |++++|+..+++.++.. |-++..+..+.+
T Consensus        85 ~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~  113 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHE-ANNPQLKEGLQN  113 (117)
T ss_dssp             TCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            88888888888888766 555555554443


No 20 
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.48  E-value=4.3e-06  Score=72.46  Aligned_cols=166  Identities=10%  Similarity=-0.020  Sum_probs=102.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHH
Q 011905          205 MIKGFCNAGRLEDACGLFKVMKRH----GCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTS  276 (475)
Q Consensus       205 li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~  276 (475)
                      ....|...|++++|...|.+..+.    +-.+ -..+|..+..+|.+.|++++|.+.+++.....   ........++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            356777888889988888877652    1111 23577888888888999999888888765421   001112344555


Q ss_pred             HHHHHH-hcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------hhH
Q 011905          277 VIQIFC-GKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG------GCY  344 (475)
Q Consensus       277 li~~~~-~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~  344 (475)
                      +...|. ..|++++|++.+++..+.    +..+ -..++..+...+...|++++|...|+++.........      ..+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            555553 358888888888765431    1111 1234566677777778888888877777664322211      123


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905          345 SSLVVELVRTKRLKEAEKLFSKMLAS  370 (475)
Q Consensus       345 ~~li~~~~~~g~~~~A~~~~~~m~~~  370 (475)
                      ...+..+...|+++.|...+++..+.
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            34444556677777777777777643


No 21 
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}
Probab=98.41  E-value=0.00037  Score=58.84  Aligned_cols=222  Identities=12%  Similarity=-0.005  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 011905          201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTS  276 (475)
Q Consensus       201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~  276 (475)
                      .+..|...+...+|+++|++.|++..+.|   +...+..|...|..    ..+...|...+......+     +......
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-----~~~a~~~   75 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCHL   75 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-----ccchhhc
Confidence            33444444445555555555555555544   33344444444443    345555555555555432     2222333


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011905          277 VIQIFCG----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFC----VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV  348 (475)
Q Consensus       277 li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  348 (475)
                      +...+..    ..+.+.|...++.....|..   .....+...+.    .......+...+......+   +...+..|.
T Consensus        76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~  149 (265)
T d1ouva_          76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG  149 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence            3322222    34455566666555554421   11222222222    1234455555555554433   334455555


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905          349 VELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL  420 (475)
Q Consensus       349 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li  420 (475)
                      ..|..    ..+...+...++...+.|   +......+-..+..    ..+.++|...|+...+.|     +...+..|.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----~~~a~~~LG  221 (265)
T d1ouva_         150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-----NGGGCFNLG  221 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHH
T ss_pred             hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc-----CHHHHHHHH
Confidence            55554    345566666666666544   33444444333433    457888888888888876     345566666


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHHcCC
Q 011905          421 LGLCR----KNHSVEAAKLARFMLKKRI  444 (475)
Q Consensus       421 ~~~~~----~g~~~~A~~~~~~m~~~~~  444 (475)
                      ..|.+    ..+.++|.++|++..+.|.
T Consensus       222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         222 AMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            66654    3477888888888887773


No 22 
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.40  E-value=7.9e-06  Score=59.76  Aligned_cols=90  Identities=14%  Similarity=-0.018  Sum_probs=46.0

Q ss_pred             HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011905          171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM  250 (475)
Q Consensus       171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~  250 (475)
                      ...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+....+.. +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            334445555555555555554433 3344445555555555555555555555555443 22445555555555555555


Q ss_pred             HHHHHHHHHHHh
Q 011905          251 ERALELLGEMEK  262 (475)
Q Consensus       251 ~~a~~~~~~~~~  262 (475)
                      ++|+..|++..+
T Consensus        88 ~~A~~~~~~a~~   99 (117)
T d1elwa_          88 EEAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            555555555554


No 23 
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.40  E-value=5.8e-06  Score=64.34  Aligned_cols=90  Identities=11%  Similarity=0.062  Sum_probs=43.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011905          314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL  393 (475)
Q Consensus       314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  393 (475)
                      ..|.+.|++++|...|++.++.+.. +...|..+..+|...|++++|+..|++.++.. +-+...|..+..++...|+++
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence            3444555555555555555544322 34444555555555555555555555554432 122344444445555555555


Q ss_pred             HHHHHHHHHHHc
Q 011905          394 EGFCLYEDIEKI  405 (475)
Q Consensus       394 ~a~~~~~~~~~~  405 (475)
                      +|...+++....
T Consensus        96 eA~~~~~~a~~~  107 (159)
T d1a17a_          96 AALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            555555555543


No 24 
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}
Probab=98.34  E-value=0.00056  Score=57.65  Aligned_cols=49  Identities=20%  Similarity=0.141  Sum_probs=27.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 011905          355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIG  406 (475)
Q Consensus       355 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~  406 (475)
                      .++++|+..|.+..+.|   +...+..|...|..    ..+.++|.+.|++..+.|
T Consensus       196 ~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         196 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             cchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            45666666666666554   23344444444433    225666666666666665


No 25 
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.34  E-value=9.9e-06  Score=62.98  Aligned_cols=88  Identities=14%  Similarity=0.030  Sum_probs=42.5

Q ss_pred             HHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHH
Q 011905          173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER  252 (475)
Q Consensus       173 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~  252 (475)
                      .|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|+..++.. +-+..+|..+..+|...|++++
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~e   96 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA   96 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHH
Confidence            4445555555555555544433 2334444444455555555555555555544432 2234445555555555555555


Q ss_pred             HHHHHHHHHh
Q 011905          253 ALELLGEMEK  262 (475)
Q Consensus       253 a~~~~~~~~~  262 (475)
                      |.+.+++...
T Consensus        97 A~~~~~~a~~  106 (159)
T d1a17a_          97 ALRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544


No 26 
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.29  E-value=5.6e-06  Score=67.22  Aligned_cols=88  Identities=14%  Similarity=0.001  Sum_probs=34.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011905          205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK  284 (475)
Q Consensus       205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  284 (475)
                      ....+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++..+..   +-+..+|..+..+|...
T Consensus        10 ~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~---p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1          10 QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC---CCcHHHHHHHHHHHHHC
Confidence            3333444444444444444333332 1233334444444444444444444444443321   12233344444444444


Q ss_pred             CCHHHHHHHHHH
Q 011905          285 GMMKEALGILDR  296 (475)
Q Consensus       285 g~~~~a~~~~~~  296 (475)
                      |++++|+..|+.
T Consensus        86 ~~~~~A~~~~~~   97 (201)
T d2c2la1          86 ESYDEAIANLQR   97 (201)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            444444444443


No 27 
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.27  E-value=5.7e-06  Score=67.20  Aligned_cols=97  Identities=9%  Similarity=-0.094  Sum_probs=44.8

Q ss_pred             CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905          163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD  242 (475)
Q Consensus       163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~  242 (475)
                      +...+......+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|+...+.. +-+..+|..+..
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~   80 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence            33444444444444455555555444444332 2334444444444555555555555555444432 113444444555


Q ss_pred             HHHhcCChHHHHHHHHHHH
Q 011905          243 GICRLGSMERALELLGEME  261 (475)
Q Consensus       243 ~~~~~g~~~~a~~~~~~~~  261 (475)
                      +|.+.|++++|+..|+++.
T Consensus        81 ~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            5555555555555555443


No 28 
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.18  E-value=2.6e-05  Score=61.27  Aligned_cols=76  Identities=7%  Similarity=-0.263  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011905          379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL  458 (475)
Q Consensus       379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~  458 (475)
                      |+.+..+|.+.|++++|+..++...+..   |.+..+|..+..+|...|++++|+..|+++++.. |-++.....+..+.
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELD---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcc---ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            4444555556666666666666666553   2255556666666666666666666666666554 33444444444443


No 29 
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}
Probab=98.15  E-value=1.1e-05  Score=58.33  Aligned_cols=91  Identities=12%  Similarity=0.054  Sum_probs=64.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011905          346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR  425 (475)
Q Consensus       346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~  425 (475)
                      .+...+.+.|++++|+..|++.++.. +-+...|..+..++.+.|++++|+..+++..+..   +.+..+|..+..+|..
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc---cccccchHHHHHHHHH
Confidence            34556677778888888877777653 1246677777777777788888888777777764   2366777777777777


Q ss_pred             cCCHHHHHHHHHHHH
Q 011905          426 KNHSVEAAKLARFML  440 (475)
Q Consensus       426 ~g~~~~A~~~~~~m~  440 (475)
                      .|++++|++.+++.+
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            888888877777653


No 30 
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.12  E-value=1.5e-05  Score=58.51  Aligned_cols=97  Identities=23%  Similarity=0.182  Sum_probs=63.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905          345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLL  421 (475)
Q Consensus       345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~  421 (475)
                      ..+++.+...+++++|.+.|++..+.+ +.+..++..+..++.+.++   .++|+.+++++...+..| ....+|..+..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~-~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc-hHHHHHHHHHH
Confidence            346666777777777777777777653 3355666666666665443   445777777776654221 11346667777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcC
Q 011905          422 GLCRKNHSVEAAKLARFMLKKR  443 (475)
Q Consensus       422 ~~~~~g~~~~A~~~~~~m~~~~  443 (475)
                      +|.+.|++++|++.|+++++..
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhHHHHHHHHHHHHhC
Confidence            7777788888888888777765


No 31 
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}
Probab=98.10  E-value=1.8e-05  Score=57.20  Aligned_cols=87  Identities=11%  Similarity=0.003  Sum_probs=42.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011905          206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG  285 (475)
Q Consensus       206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  285 (475)
                      ...+.+.|++++|...|++..+... -+..+|..+..++.+.|++++|+..|++..+..   |.+..+|..+...|...|
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccc---cccccchHHHHHHHHHCC
Confidence            3344445555555555555544421 134455555555555555555555555554432   233444455555555555


Q ss_pred             CHHHHHHHHHH
Q 011905          286 MMKEALGILDR  296 (475)
Q Consensus       286 ~~~~a~~~~~~  296 (475)
                      ++++|++.+++
T Consensus        99 ~~~~A~~~l~~  109 (112)
T d1hxia_          99 NANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            55555555544


No 32 
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.04  E-value=1.7e-05  Score=58.21  Aligned_cols=25  Identities=28%  Similarity=0.284  Sum_probs=10.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHh
Q 011905          238 SALLDGICRLGSMERALELLGEMEK  262 (475)
Q Consensus       238 ~~ll~~~~~~g~~~~a~~~~~~~~~  262 (475)
                      ..+..+|.+.|++++|.+.|+++.+
T Consensus        76 ~~Lg~~y~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          76 FYLAVGNYRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3334444444444444444444433


No 33 
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Probab=98.00  E-value=0.00014  Score=55.79  Aligned_cols=79  Identities=6%  Similarity=-0.220  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905          377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE  456 (475)
Q Consensus       377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~  456 (475)
                      .+|..+..+|.+.|++++|+..++.+.+.+   +.+..+|..+..++...|++++|+..|++.++.. |-+..+...+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~---p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~  143 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYEL  143 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc---chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            356667778889999999999999998875   3478899999999999999999999999999887 556666655544


Q ss_pred             HHH
Q 011905          457 HLK  459 (475)
Q Consensus       457 ~~~  459 (475)
                      +..
T Consensus       144 ~~~  146 (153)
T d2fbna1         144 CVN  146 (153)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443


No 34 
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}
Probab=97.95  E-value=0.0045  Score=53.43  Aligned_cols=146  Identities=8%  Similarity=0.040  Sum_probs=92.9

Q ss_pred             CCCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH
Q 011905           55 AKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK  133 (475)
Q Consensus        55 ~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  133 (475)
                      ..++......+.+.| ..+..+.|..++....          .|..++..+...++++.|.+++...      -+..+|.
T Consensus        10 ~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k   73 (336)
T d1b89a_          10 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK   73 (336)
T ss_dssp             TCC----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHH
T ss_pred             cCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHH
Confidence            345666777788888 5677788888876542          2678888888889999988877642      3677888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 011905          134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG  213 (475)
Q Consensus       134 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  213 (475)
                      .+...|.+.....-|.-     .......+......++..|-..|.++....+++...... ..+...++.++..|++.+
T Consensus        74 ~~~~~l~~~~e~~la~i-----~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          74 EVCFACVDGKEFRLAQM-----CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHHHHTTCHHHHHH-----TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCcHHHHHHH-----HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence            88999998877655422     122223466666788999999999999999999876432 567778888999888865


Q ss_pred             CHHHHHHHHH
Q 011905          214 RLEDACGLFK  223 (475)
Q Consensus       214 ~~~~a~~~~~  223 (475)
                       .++..+.++
T Consensus       148 -~~kl~e~l~  156 (336)
T d1b89a_         148 -PQKMREHLE  156 (336)
T ss_dssp             -HHHHHHHHH
T ss_pred             -hHHHHHHHH
Confidence             344444443


No 35 
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}
Probab=97.91  E-value=9.1e-05  Score=57.94  Aligned_cols=88  Identities=5%  Similarity=-0.223  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011905          376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV  455 (475)
Q Consensus       376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~  455 (475)
                      ...+..+..++.+.|++++|+..++.+.+..   +.+...|..+..++...|++++|++.|+++++.. |.+......+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~---p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~  152 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh---hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            3456667778888999999999999998865   3478889999999999999999999999999887 66777777766


Q ss_pred             HHHHhcCCHhHH
Q 011905          456 EHLKKSGDEELI  467 (475)
Q Consensus       456 ~~~~~~g~~~~a  467 (475)
                      .+..+.......
T Consensus       153 ~~~~~l~~~~~~  164 (169)
T d1ihga1         153 KVKQKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666555444443


No 36 
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.88  E-value=0.00034  Score=54.53  Aligned_cols=79  Identities=9%  Similarity=-0.032  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011905          343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG  422 (475)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~  422 (475)
                      +|+.+..+|.+.|++++|+..+++.++.. +-+...+..+..+|...|++++|...|++..+..  | .+..+...+..+
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P-~n~~~~~~l~~~  139 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--P-NNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S-SCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--C-CCHHHHHHHHHH
Confidence            46677788888889999998888888753 2367778888888888899999999998888864  2 355555555444


Q ss_pred             HHh
Q 011905          423 LCR  425 (475)
Q Consensus       423 ~~~  425 (475)
                      .-+
T Consensus       140 ~~~  142 (170)
T d1p5qa1         140 QQR  142 (170)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433


No 37 
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.86  E-value=7.2e-06  Score=76.89  Aligned_cols=111  Identities=9%  Similarity=-0.066  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905          344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL  423 (475)
Q Consensus       344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~  423 (475)
                      +..+...+.+.|+.++|...+.......  | ..++..+...+...|++++|...|++..+..   +.+...|+.+...+
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~---P~~~~~~~~Lg~~~  196 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV---PSNGQPYNQLAILA  196 (497)
T ss_dssp             --------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTBSHHHHHHHHHH
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCchHHHHHHHHHH
Confidence            4444444445555555554444433210  1 1334444445555555555555555555543   22445555555555


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011905          424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS  461 (475)
Q Consensus       424 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~  461 (475)
                      ...|+..+|...|.+.+... +|-+..+..+...+.+.
T Consensus       197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence            55555555555555555544 44445555555554443


No 38 
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.85  E-value=0.0002  Score=52.91  Aligned_cols=107  Identities=11%  Similarity=-0.016  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----chhhHHHH
Q 011905          344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV----DSDIHSVL  419 (475)
Q Consensus       344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~~l  419 (475)
                      +..+...+...|++++|+..|.+.++.+ +.+...+..+..+|.+.|++++|...++++.+.......    -..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            4456667778888888888888887653 235677777778888888888888888887764211000    02356667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011905          420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK  453 (475)
Q Consensus       420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~  453 (475)
                      ...+...+++++|++.|++.+...  +++.....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~  117 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKK  117 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcC--CCHHHHHH
Confidence            777778888888888888887653  45544443


No 39 
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.85  E-value=0.00036  Score=54.79  Aligned_cols=126  Identities=9%  Similarity=-0.016  Sum_probs=83.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011905          314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL  393 (475)
Q Consensus       314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  393 (475)
                      ......|++++|.+.|...+.....+-   +       ......+-+...-..+..    -....+..+..++...|+++
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~---l-------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPV---L-------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSST---T-------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccc---c-------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence            456677888888888888776422110   0       000000001111111110    01245667888889999999


Q ss_pred             HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHHHHH
Q 011905          394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVDKIVE  456 (475)
Q Consensus       394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~l~~  456 (475)
                      +|...++.+.+..   +.+...|..++.+|.+.|+..+|++.|+++.+     .|+.|++.+-...-.
T Consensus        85 ~Al~~~~~al~~~---P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~  149 (179)
T d2ff4a2          85 AVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER  149 (179)
T ss_dssp             HHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence            9999999999875   35888999999999999999999999998754     588998876554433


No 40 
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}
Probab=97.75  E-value=0.001  Score=51.51  Aligned_cols=78  Identities=9%  Similarity=-0.215  Sum_probs=45.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011905          379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL  458 (475)
Q Consensus       379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~  458 (475)
                      |..+..+|.+.|++++|+..++...+..   +.+...|..+..++...|++++|.+.|++++... |.+......+....
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLD---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3344455566666666666666666653   2355666666666666666666666666666654 44444444444443


Q ss_pred             Hh
Q 011905          459 KK  460 (475)
Q Consensus       459 ~~  460 (475)
                      ..
T Consensus       143 ~~  144 (168)
T d1kt1a1         143 KK  144 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            33


No 41 
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.75  E-value=0.00036  Score=51.43  Aligned_cols=92  Identities=18%  Similarity=0.265  Sum_probs=42.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-----hhhHHHHHHH
Q 011905          277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-S-----GGCYSSLVVE  350 (475)
Q Consensus       277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~-----~~~~~~li~~  350 (475)
                      +...+.+.|++++|+..|.+..+.+ +.+...+..+..+|.+.|++++|...++.+++.+... .     ..+|..+...
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444432 1234444444444555555555555554444321100 0     1234445555


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 011905          351 LVRTKRLKEAEKLFSKMLA  369 (475)
Q Consensus       351 ~~~~g~~~~A~~~~~~m~~  369 (475)
                      +...+++++|++.|++...
T Consensus        89 ~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHh
Confidence            5555666666666655543


No 42 
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.66  E-value=1.2e-05  Score=75.35  Aligned_cols=76  Identities=12%  Similarity=0.022  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011905          309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL  386 (475)
Q Consensus       309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~  386 (475)
                      +..+...+...|++++|...|++..+..+. +...|+.|...+...|+..+|...|.+.+... .|-..++..|...+
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence            333444444445555555555544443321 23344445555555555555555554444332 23334444444333


No 43 
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Probab=97.66  E-value=0.0011  Score=50.51  Aligned_cols=61  Identities=16%  Similarity=-0.056  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905          344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI  405 (475)
Q Consensus       344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  405 (475)
                      |..+..+|.+.|++++|++.+.+.++.+ +.+..+|..+..++...|++++|...|+...+.
T Consensus        70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          70 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3344444444444444444444444332 123344444444444444444444444444443


No 44 
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.65  E-value=0.00076  Score=52.86  Aligned_cols=123  Identities=13%  Similarity=0.091  Sum_probs=77.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011905          169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG  248 (475)
Q Consensus       169 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g  248 (475)
                      .........|++++|.+.|.+.....  +....     ..+ ..+.+  +...-..+...    ....+..+...+.+.|
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l-----~~~-~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREW--RGPVL-----DDL-RDFQF--VEPFATALVED----KVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT-----GGG-TTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc-----ccC-cchHH--HHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence            33456677888888888888776531  11100     000 00111  11111111111    2456677888888888


Q ss_pred             ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 011905          249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME-----ALGCAPNRVT  308 (475)
Q Consensus       249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~  308 (475)
                      ++++|+..++.+.+..   +-+...|..++.+|.+.|+..+|++.|+++.     +.|+.|...+
T Consensus        82 ~~~~Al~~~~~al~~~---P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          82 RASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             CHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             CchHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            8888888888888753   5677888888888888888888888888764     3578887654


No 45 
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}
Probab=97.61  E-value=0.00082  Score=52.19  Aligned_cols=64  Identities=14%  Similarity=0.063  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905          234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL  300 (475)
Q Consensus       234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  300 (475)
                      ...|..+..+|.+.|++++|+..++++.+..   +.+..+|..+..++...|++++|+..|+...+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~---p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh---hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3445556666667777777777777766642   345566666666777777777777777666664


No 46 
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}
Probab=97.52  E-value=0.0041  Score=47.98  Aligned_cols=61  Identities=15%  Similarity=0.063  Sum_probs=33.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905          309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS  370 (475)
Q Consensus       309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  370 (475)
                      |..+..+|.+.|++++|+..++..++.+.. +..+|..+..+|...|++++|...|.++.+.
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            444455555556666666655555554322 4455555555566666666666666665543


No 47 
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=97.40  E-value=0.00022  Score=59.91  Aligned_cols=51  Identities=25%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905          211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK  262 (475)
Q Consensus       211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  262 (475)
                      +.|++++|+..+++.++.. +-|...+..+...|+..|++++|.+.++...+
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4455555555555555543 22455555555555555555555555555555


No 48 
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=97.36  E-value=9.8e-05  Score=62.18  Aligned_cols=51  Identities=22%  Similarity=0.237  Sum_probs=28.7

Q ss_pred             hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhcc
Q 011905          141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL  192 (475)
Q Consensus       141 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  192 (475)
                      +.|++++|+..+++.++.. +.|...+..+...++..|++++|.+.++...+
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3455566666666555543 23555555566666666666666666655554


No 49 
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.25  E-value=0.0005  Score=51.86  Aligned_cols=36  Identities=8%  Similarity=-0.138  Sum_probs=20.0

Q ss_pred             hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc
Q 011905          141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK  177 (475)
Q Consensus       141 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~  177 (475)
                      +.+.+++|...|+...+.. |.+...+..+..++...
T Consensus         9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~   44 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLEL   44 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHh
Confidence            3445666666666665543 34555555555555543


No 50 
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.12  E-value=0.0008  Score=50.69  Aligned_cols=49  Identities=8%  Similarity=0.015  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcC
Q 011905          392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN-----------HSVEAAKLARFMLKKR  443 (475)
Q Consensus       392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~  443 (475)
                      +++|...+++..+.+   |.+..+|..+..+|...|           .+++|.+.|++.++..
T Consensus        57 ~~~Ai~~~~kAl~l~---P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          57 IQEAITKFEEALLID---PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhc---chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            344555555555543   124455555555554432           2455666666666554


No 51 
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}
Probab=97.03  E-value=0.0038  Score=47.44  Aligned_cols=95  Identities=9%  Similarity=-0.041  Sum_probs=60.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-
Q 011905          348 VVELVRTKRLKEAEKLFSKMLASG-VKPD----------GLACSVMIRELCLGGQVLEGFCLYEDIEKIG-----FLSS-  410 (475)
Q Consensus       348 i~~~~~~g~~~~A~~~~~~m~~~~-~~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-  410 (475)
                      ...+...|++++|+..|++.++.. -.|+          ...|+.+..+|...|++++|...+++..+..     ..+. 
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            334455677777777777666421 0111          2456667777778888888887777766421     1110 


Q ss_pred             --CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905          411 --VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK  442 (475)
Q Consensus       411 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  442 (475)
                        ....+|+.+..+|...|++++|++.|++.++.
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence              01235677788888999999999998887753


No 52 
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}
Probab=96.97  E-value=0.01  Score=44.98  Aligned_cols=58  Identities=14%  Similarity=0.109  Sum_probs=30.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCCC---------cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905          241 LDGICRLGSMERALELLGEMEKEGGDCSP---------NVVTYTSVIQIFCGKGMMKEALGILDRME  298 (475)
Q Consensus       241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~  298 (475)
                      ...+.+.|++++|++.|++..+.....+.         ....|+.+..+|.+.|++++|...+++..
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            33445566777777777666552111110         12345555555566666666555555443


No 53 
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.85  E-value=0.0091  Score=40.74  Aligned_cols=71  Identities=8%  Similarity=-0.088  Sum_probs=35.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC---CCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905          381 VMIRELCLGGQVLEGFCLYEDIEKIG---FLS-SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD  452 (475)
Q Consensus       381 ~li~~~~~~g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~  452 (475)
                      .+-..+.+.|++++|...|++..+..   ..+ .....+++.+..++.+.|++++|++.++++++.. |-++.+++
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~   84 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANG   84 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHH
Confidence            34444455555555555555544321   000 0123455556666666666666666666666554 33444433


No 54 
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=96.66  E-value=0.054  Score=38.00  Aligned_cols=63  Identities=14%  Similarity=0.065  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905          344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF  407 (475)
Q Consensus       344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  407 (475)
                      .+..++.+.+.|+-+.-.++++.+.+.+ +|++...-.+..+|.+.|...++-+++.+.-+.|.
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            4444555555666666666665555433 45555555555666666666666666666655554


No 55 
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
Probab=96.21  E-value=0.11  Score=37.67  Aligned_cols=81  Identities=12%  Similarity=0.013  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----c
Q 011905          355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----K  426 (475)
Q Consensus       355 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~  426 (475)
                      .+.++|++.+++..+.|   +......|-..|..    ..+.++|.++|++..+.|     +......|...|..    .
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----~~~a~~~Lg~~y~~G~gv~  108 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----DQDGCLILGYKQYAGKGVV  108 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-----cchHHHHHHHHHHcCCccC
Confidence            45666666666666554   22333333333332    345677777777777765     33444455555543    3


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 011905          427 NHSVEAAKLARFMLKKR  443 (475)
Q Consensus       427 g~~~~A~~~~~~m~~~~  443 (475)
                      .+.++|.++|++..+.|
T Consensus       109 ~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         109 KNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCC
Confidence            56777777777777766


No 56 
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.14  E-value=0.028  Score=38.16  Aligned_cols=63  Identities=10%  Similarity=-0.009  Sum_probs=37.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905          344 YSSLVVELVRTKRLKEAEKLFSKMLAS-----GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIG  406 (475)
Q Consensus       344 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  406 (475)
                      +-.+...+.+.|++++|+..|++..+.     ...++ ..++..|..++.+.|++++|...++++.+..
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            344556666667777776666665532     11122 3456666666777777777777777776654


No 57 
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
Probab=95.97  E-value=0.15  Score=36.80  Aligned_cols=46  Identities=7%  Similarity=-0.116  Sum_probs=19.6

Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHh
Q 011905          214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEK  262 (475)
Q Consensus       214 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~  262 (475)
                      +.++|.+.+++..+.|   +...+..|...|..    ..+.++|.++|++..+
T Consensus        38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~   87 (133)
T d1klxa_          38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG   87 (133)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhc
Confidence            4444555554444443   23333333333332    2344455555555444


No 58 
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=95.19  E-value=0.3  Score=34.18  Aligned_cols=140  Identities=11%  Similarity=0.129  Sum_probs=78.8

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 011905          210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE  289 (475)
Q Consensus       210 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  289 (475)
                      .-.|..++..+++.+..+.   .+..-||.++.-....-+-+...++++.+-+- .++.|-. -...++..+...+.   
T Consensus        13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDls~C~-Nlk~vv~C~~~~n~---   84 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQ-NLKSVVECGVINNT---   84 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCS-CTHHHHHHHHHTTC---
T ss_pred             HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cCchhhh-cHHHHHHHHHHhcc---
Confidence            3456677777777776664   25566666666666666666666666666542 1111100 01112222222221   


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905          290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA  369 (475)
Q Consensus       290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  369 (475)
                                     +...+...++.....|+-+.-.++++++.+.+ .+++...-.+..+|.+.|...++-+++.+.-+
T Consensus        85 ---------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          85 ---------------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             ---------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence                           33344555566666777777777777665533 34556666666777777777777777777766


Q ss_pred             CCCC
Q 011905          370 SGVK  373 (475)
Q Consensus       370 ~~~~  373 (475)
                      .|++
T Consensus       149 ~G~K  152 (161)
T d1wy6a1         149 KGEK  152 (161)
T ss_dssp             TTCH
T ss_pred             HhHH
Confidence            6654


No 59 
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=92.08  E-value=0.56  Score=30.96  Aligned_cols=69  Identities=14%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             HHHhcC-ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011905          103 MSRIKQ-NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR  172 (475)
Q Consensus       103 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~  172 (475)
                      .+.+.. +.-++.+-++.+......|++....+.+++|.+.+++..|+.+|+..+... .++...|..+++
T Consensus        14 ~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq   83 (105)
T d1v54e_          14 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   83 (105)
T ss_dssp             HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HhcCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence            344443 556677778888888889999999999999999999999999999887532 234567776664


No 60 
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}
Probab=90.66  E-value=5.1  Score=35.25  Aligned_cols=345  Identities=8%  Similarity=-0.046  Sum_probs=179.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhh
Q 011905           87 QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII  166 (475)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~  166 (475)
                      .++.+.....-......+.+.++++.....+.     ..+.+...-.....+....|+.++|...+..+-..|. .....
T Consensus        65 ~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~  138 (450)
T d1qsaa1          65 NPTLPPARTLQSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNA  138 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTH
T ss_pred             CCCChhHHHHHHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchH
Confidence            34443344444455666777777665443321     2244555545566677777777777766665443331 22223


Q ss_pred             HHHHHHHHHh------------------cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905          167 YNNVIRLFCE------------------KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH  228 (475)
Q Consensus       167 ~~~ll~~~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  228 (475)
                      +..+...+.+                  .|+...|..+...+..    .........+.....   ...+....   ...
T Consensus       139 c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~---p~~~~~~~---~~~  208 (450)
T d1qsaa1         139 CDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANN---PNTVLTFA---RTT  208 (450)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHC---GGGHHHHH---HHS
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhC---hHhHHHHH---hcC
Confidence            3333333333                  3444444443332211    111122222222221   11111111   111


Q ss_pred             CCCcCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHcCC
Q 011905          229 GCAANLVAYSALLDGICR--LGSMERALELLGEMEKEGGDCSPNVVTYTSVI----QIFCGKGMMKEALGILDRMEALGC  302 (475)
Q Consensus       229 g~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~~  302 (475)
                        ..+......+..++.+  ..+.+.|...+.......   ..+...+..+-    ......+..+.+..++......+ 
T Consensus       209 --~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~-  282 (450)
T d1qsaa1         209 --GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ---QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-  282 (450)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-
T ss_pred             --CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc---cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc-
Confidence              2233333333444433  257788888888776642   12222222222    22234566777877777766654 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011905          303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM  382 (475)
Q Consensus       303 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  382 (475)
                       .+.......+......+++..+...++.|.... ........-+..++...|+.+.|...|.....   .++  -|..|
T Consensus       283 -~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~L  355 (450)
T d1qsaa1         283 -QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMV  355 (450)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHH
T ss_pred             -cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHH
Confidence             344445556666677788888888888774322 12234445567888888999999988888763   233  23333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh-----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011905          383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI-----HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH  457 (475)
Q Consensus       383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~  457 (475)
                      . + .+.|..-.       +..... +......     --.-+..+...|+...|...+..+...   .++.....+...
T Consensus       356 A-a-~~Lg~~~~-------~~~~~~-~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~l  422 (450)
T d1qsaa1         356 A-A-QRIGEEYE-------LKIDKA-PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARY  422 (450)
T ss_dssp             H-H-HHTTCCCC-------CCCCCC-CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHH
T ss_pred             H-H-HHcCCCCC-------CCcCCC-CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHH
Confidence            2 2 22222100       000000 0000011     112356677889999999999888753   356677788899


Q ss_pred             HHhcCCHhHHhhcccc
Q 011905          458 LKKSGDEELITNLPKI  473 (475)
Q Consensus       458 ~~~~g~~~~a~~l~~~  473 (475)
                      ..+.|.++.+......
T Consensus       423 A~~~g~~~~aI~a~~~  438 (450)
T d1qsaa1         423 AFNNQWWDLSVQATIA  438 (450)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHCCChhHHHHHHHH
Confidence            9999999988766543


No 61 
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=89.92  E-value=2.2  Score=29.77  Aligned_cols=69  Identities=13%  Similarity=0.034  Sum_probs=48.1

Q ss_pred             CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905          373 KPDGLACSVMIRELCLG---GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR  443 (475)
Q Consensus       373 ~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  443 (475)
                      .|...|--....++.+.   .+.++++.+++++.+.+  |......+..+..+|.+.|++++|.+.++.+++..
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            45555544455555544   45668888888888754  22224567778888889999999999999988876


No 62 
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=89.20  E-value=2.5  Score=29.45  Aligned_cols=50  Identities=6%  Similarity=0.158  Sum_probs=28.9

Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905          321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS  370 (475)
Q Consensus       321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  370 (475)
                      +++++..+++++.+.+..-....+..|..+|.+.|++++|.+.++.+++.
T Consensus        53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            34566666666665432111234455566666777777777777776654


No 63 
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=87.96  E-value=2.4  Score=27.85  Aligned_cols=50  Identities=10%  Similarity=0.065  Sum_probs=33.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905          356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI  405 (475)
Q Consensus       356 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  405 (475)
                      +.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34455555666665666677777777777777777777777777766654


No 64 
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}
Probab=86.99  E-value=9.2  Score=33.47  Aligned_cols=311  Identities=10%  Similarity=-0.034  Sum_probs=172.8

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----------------ccCHHhHHHHHHHHHhcCCHHHHHHHHHh
Q 011905           92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGC-----------------VVSVKMMKVIFNLCEKARLANEAMWVLRK  154 (475)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~  154 (475)
                      .+...-......+...|+...+...+..+-..|.                 .++...+-.-+......|++..|..+...
T Consensus       100 ~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~  179 (450)
T d1qsaa1         100 GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ  179 (450)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhh
Confidence            3444333444555556666666555554433331                 23333333344444455566666666554


Q ss_pred             cccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCc
Q 011905          155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN--AGRLEDACGLFKVMKRHGCAA  232 (475)
Q Consensus       155 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~~  232 (475)
                      +..    .........+....   +...+.......     .++......+..++.+  ..+.+.+..++......... 
T Consensus       180 l~~----~~~~~~~a~~~l~~---~p~~~~~~~~~~-----~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-  246 (450)
T d1qsaa1         180 MPA----DYQTIASAIISLAN---NPNTVLTFARTT-----GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-  246 (450)
T ss_dssp             CCG----GGHHHHHHHHHHHH---CGGGHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-
T ss_pred             CCh----hHHHHHHHHHHHHh---ChHhHHHHHhcC-----CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-
Confidence            432    12223333443332   233333333222     2233333333333333  35788899888887764322 


Q ss_pred             CHHHHHHH----HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011905          233 NLVAYSAL----LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT  308 (475)
Q Consensus       233 ~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  308 (475)
                      +..-...+    ...+...+..+.+...+......+    .+.....-.+......+++..+...+..|... ......-
T Consensus       247 ~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~  321 (450)
T d1qsaa1         247 NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS----QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEW  321 (450)
T ss_dssp             CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc----cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHH
Confidence            22223222    233344577888888888877643    34444444566667789999999999887543 2223455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC-HH---HHHHH
Q 011905          309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV--KPD-GL---ACSVM  382 (475)
Q Consensus       309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~-~~---~~~~l  382 (475)
                      .-.+.+++...|+.+.|...|......   ++   |..++.+- +.|..-.       +....+  .+. ..   .-..-
T Consensus       322 ~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~r  387 (450)
T d1qsaa1         322 RYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYE-------LKIDKAPQNVDSALTQGPEMAR  387 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHH
T ss_pred             HHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCC-------CCcCCCCccHHHhhhcChHHHH
Confidence            567788999999999999999998753   22   44443322 2232100       000000  000 00   01123


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905          383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM  439 (475)
Q Consensus       383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  439 (475)
                      +..+...|+...|...|..+.+..     +......+.....+.|.++.|+......
T Consensus       388 a~~L~~~g~~~~A~~e~~~l~~~~-----~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         388 VRELMYWNLDNTARSEWANLVKSK-----SKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHcCCchHHHHHHHHHHhCC-----CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            455778899999999999887642     3445667777788999999998776554


No 65 
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=76.76  E-value=11  Score=27.09  Aligned_cols=109  Identities=11%  Similarity=0.022  Sum_probs=58.3

Q ss_pred             CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 011905          108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM  187 (475)
Q Consensus       108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  187 (475)
                      ++++.|.++   ..+.|.+-....|.--++.+...|++.+|..+-....+ |+-.+..|.+.+-.+-...|+..-.+.+|
T Consensus        13 ~n~~la~~l---A~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~pGq~spLL~YF   88 (157)
T d1bpoa1          13 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF   88 (157)
T ss_dssp             CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHH---HHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            444444333   23445555555566666666667777777766655543 44456666555544444455555566666


Q ss_pred             HHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905          188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL  221 (475)
Q Consensus       188 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  221 (475)
                      ..+.+.| ..|..----+++.....|+.+-..+.
T Consensus        89 ~~Ll~~~-~LN~~ESlEl~r~vL~q~r~~lve~W  121 (157)
T d1bpoa1          89 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW  121 (157)
T ss_dssp             HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhcC-CCchHHhHHHHHHHHhcCcHHHHHHH
Confidence            6665554 33333333445555555555544433


No 66 
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.47  E-value=12  Score=28.29  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=12.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHH
Q 011905          275 TSVIQIFCGKGMMKEALGILDRM  297 (475)
Q Consensus       275 ~~li~~~~~~g~~~~a~~~~~~m  297 (475)
                      ..++.-|...++.++|...++++
T Consensus        14 ~~il~Ey~~~~D~~Ea~~~l~el   36 (193)
T d1ug3a1          14 KAIIEEYLHLNDMKEAVQCVQEL   36 (193)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHc
Confidence            34455555556666666655554


No 67 
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=60.96  E-value=6.3  Score=23.39  Aligned_cols=44  Identities=11%  Similarity=-0.020  Sum_probs=19.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011905          416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK  460 (475)
Q Consensus       416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~  460 (475)
                      +|.++..+++..-.+.++.++.+++..| ..+..+|-.-.+.+.+
T Consensus         4 ~nQl~~l~Aed~AieDaiy~L~~aL~~G-~I~~d~ylK~vR~LaR   47 (64)
T d2f6ma1           4 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR   47 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcCHHHHHHHHHHHHH
Confidence            3444444444444444444444444444 3444444444443333


No 68 
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=49.94  E-value=40  Score=24.03  Aligned_cols=110  Identities=12%  Similarity=0.056  Sum_probs=59.5

Q ss_pred             cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 011905          212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL  291 (475)
Q Consensus       212 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  291 (475)
                      .++.+-|.++   ..+.|++--...|..-.+.+...|++.+|-++.-...+   ++-.+..|.+.+-..-...|+..-.+
T Consensus        12 l~n~~la~~l---A~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~---giLRt~~Ti~rFk~~~~~pGq~spLL   85 (157)
T d1bpoa1          12 LQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK---GILRTPDTIRRFQSVPAQPGQTSPLL   85 (157)
T ss_dssp             TCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG---GSSCSHHHHHHHTTSCCCTTSCCHHH
T ss_pred             cCCHHHHHHH---HHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc---ccccCHHHHHHHHcCCCCCCCCCHHH
Confidence            3445544333   33455555556666677777777777777777654433   23445555554443334455566666


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011905          292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL  328 (475)
Q Consensus       292 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~  328 (475)
                      .+|..+.+.|- .|..--..+++.....|+.+-..+.
T Consensus        86 ~YF~~Ll~~~~-LN~~ESlEl~r~vL~q~r~~lve~W  121 (157)
T d1bpoa1          86 QYFGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKW  121 (157)
T ss_dssp             HHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhcCC-CchHHhHHHHHHHHhcCcHHHHHHH
Confidence            66666666542 3433334445555555555444433


No 69 
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=47.94  E-value=24  Score=21.02  Aligned_cols=6  Identities=17%  Similarity=0.351  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 011905          254 LELLGE  259 (475)
Q Consensus       254 ~~~~~~  259 (475)
                      ..+++.
T Consensus        21 ~~~~~~   26 (69)
T d1khda1          21 HQLFAA   26 (69)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333


No 70 
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=47.56  E-value=39  Score=23.22  Aligned_cols=24  Identities=13%  Similarity=0.129  Sum_probs=14.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhcc
Q 011905          133 KVIFNLCEKARLANEAMWVLRKMP  156 (475)
Q Consensus       133 ~~li~~~~~~~~~~~A~~~~~~m~  156 (475)
                      ..++.-|...|+.++|...++++.
T Consensus        11 ~~ll~EY~~~~D~~Ea~~~l~eL~   34 (129)
T d2nsza1          11 DMLLKEYLLSGDISEAEHCLKELE   34 (129)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcC
Confidence            445555666666666666666654


No 71 
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.32  E-value=27  Score=26.49  Aligned_cols=186  Identities=11%  Similarity=0.107  Sum_probs=87.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011905          239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV  318 (475)
Q Consensus       239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  318 (475)
                      .++.-.+..|+.+...+++..-...  -...|..-++.|..+ +..|+.+-+.-+++..... ...+.... ..+.....
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~~~~--~~~~D~~G~TpLh~A-a~~g~~e~~~~l~~~~~~~-~~~~~~~~-~~~~~~~~   79 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILADKSL--ATRTDQDSRTALHWA-CSAGHTEIVEFLLQLGVPV-NDKDDAGW-SPLHIAAS   79 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHCGGG--GGCCCTTSCCHHHHH-HHHTCHHHHHHHHHHTCCS-CCCCTTCC-CHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCc--CcCcCCCCCCHHHHH-HHhhhhccccccccccccc-cccccccc-cccccccc
Confidence            4566678999999988887653321  112444445554444 4567665444333332221 11122222 22333455


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCH
Q 011905          319 EGNLDEAYQLIDKVVAGGSVSSG---GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA---CSVMIRELCLGGQV  392 (475)
Q Consensus       319 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~  392 (475)
                      .+..+-+    +.+.+.+..++.   .-.+.|. ..+..|..+    +++.+.+.|..|+...   .+. +...+..+..
T Consensus        80 ~~~~~i~----~~Ll~~~~d~~~~d~~g~tpL~-~A~~~~~~e----~~~~Ll~~g~d~~~~~~~~~t~-L~~a~~~~~~  149 (223)
T d1uoha_          80 AGRDEIV----KALLGKGAQVNAVNQNGCTPLH-YAASKNRHE----IAVMLLEGGANPDAKDHYEATA-MHRAAAKGNL  149 (223)
T ss_dssp             HTCHHHH----HHHHHTTCCTTCCCTTCCCHHH-HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCH
T ss_pred             ccccchh----HHHhccCceeEeeCCCCCchhh-HHHHcCCHH----HHHHHHHCCCCCCCcCCCCCcc-chhhhhcCCc
Confidence            6666444    444455544422   1122333 334567654    3444455666655322   223 3344566666


Q ss_pred             HHHHHHHHHHHHcCCCCC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011905          393 LEGFCLYEDIEKIGFLSS-VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG  448 (475)
Q Consensus       393 ~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~  448 (475)
                      +..    +.+...+..+. .+..-++.+..+ ++.|+.+    +++.+++.|..++.
T Consensus       150 ~~~----~~L~~~~~~i~~~d~~g~TpL~~A-a~~g~~~----~v~~LL~~Gad~~~  197 (223)
T d1uoha_         150 KMI----HILLYYKASTNIQDTEGNTPLHLA-CDEERVE----EAKLLVSQGASIYI  197 (223)
T ss_dssp             HHH----HHHHHTTCCSCCCCTTCCCHHHHH-HHTTCHH----HHHHHHHTTCCSCC
T ss_pred             chh----hhhccccceeeeccCCCCceeccc-cccCcHH----HHHHHHHCCCCCCC
Confidence            543    33344443221 133334444444 4566654    33445566765554


No 72 
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.85  E-value=40  Score=23.16  Aligned_cols=64  Identities=19%  Similarity=0.225  Sum_probs=31.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCC
Q 011905          238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM--KEALGILDRMEALGCAP  304 (475)
Q Consensus       238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p  304 (475)
                      ..++.-|...|+.++|...++++....   .-...++..+..+.-+.+.-  +.+.+++..+...|+-+
T Consensus        11 ~~ll~EY~~~~D~~Ea~~~l~eL~~p~---~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is   76 (129)
T d2nsza1          11 DMLLKEYLLSGDISEAEHCLKELEVPH---FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT   76 (129)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHTCGG---GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCch---hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCC
Confidence            455666666677777766666664310   01223333333333343333  22455666666665443


No 73 
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=46.83  E-value=27  Score=24.19  Aligned_cols=61  Identities=11%  Similarity=0.146  Sum_probs=39.7

Q ss_pred             HHHHcCCCCCCchhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011905          401 DIEKIGFLSSVDSDIHSVLLLGLCRK-NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE  464 (475)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~  464 (475)
                      ++++.|+++++   .-..++..+... +..-.|.++++.+.+.+..++..|....+..+.+.|-.
T Consensus         6 ~Lr~~GlR~T~---qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli   67 (134)
T d1mzba_           6 ELRKAGLKVTL---PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV   67 (134)
T ss_dssp             HHHHTTCCCCH---HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred             HHHHcCCCCCH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccEE
Confidence            35667766532   334555666554 34667778888887777777777777777777776654


No 74 
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.24  E-value=65  Score=24.63  Aligned_cols=19  Identities=11%  Similarity=-0.074  Sum_probs=11.1

Q ss_pred             HHHHHhcCCHHHHHHHHHh
Q 011905          136 FNLCEKARLANEAMWVLRK  154 (475)
Q Consensus       136 i~~~~~~~~~~~A~~~~~~  154 (475)
                      ++.|...++|++|+++++.
T Consensus        19 LDv~Ia~~~feeAl~ll~~   37 (229)
T d2d2sa1          19 IDIELARLRFESAVETLLD   37 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHH
Confidence            4455566666666666544


No 75 
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.24  E-value=13  Score=22.00  Aligned_cols=27  Identities=15%  Similarity=0.090  Sum_probs=10.7

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhccCC
Q 011905          168 NNVIRLFCEKGDMIAADELMKGMGLID  194 (475)
Q Consensus       168 ~~ll~~~~~~g~~~~a~~~~~~m~~~~  194 (475)
                      |.|+..+++..-.+.++..++++...|
T Consensus         5 nQl~~l~Aed~AieDaiy~L~~aL~~G   31 (64)
T d2f6ma1           5 NQLYNLVAQDYALTDTIEALSRMLHRG   31 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            333333333333344444444444333


No 76 
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=41.11  E-value=31  Score=23.85  Aligned_cols=20  Identities=10%  Similarity=0.001  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCh
Q 011905          322 LDEAYQLIDKVVAGGSVSSG  341 (475)
Q Consensus       322 ~~~a~~~~~~~~~~~~~~~~  341 (475)
                      .-.|.++++.+.+.+...+.
T Consensus        32 h~sa~ei~~~l~~~~~~i~~   51 (134)
T d1mzba_          32 HMSAEDVYKALMEAGEDVGL   51 (134)
T ss_dssp             SBCHHHHHHHHHHTTCCCCH
T ss_pred             CCCHHHHHHHHHHhCCCccH
Confidence            33444444444444433333


No 77 
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.46  E-value=78  Score=24.15  Aligned_cols=21  Identities=14%  Similarity=0.039  Sum_probs=15.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHh
Q 011905          170 VIRLFCEKGDMIAADELMKGM  190 (475)
Q Consensus       170 ll~~~~~~g~~~~a~~~~~~m  190 (475)
                      -++.+...+++++|.++++..
T Consensus        18 ~LDv~Ia~~~feeAl~ll~~~   38 (229)
T d2d2sa1          18 EIDIELARLRFESAVETLLDI   38 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHH
Confidence            356777888888888887654


No 78 
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.58  E-value=44  Score=21.04  Aligned_cols=47  Identities=11%  Similarity=0.029  Sum_probs=28.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011905          379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS  429 (475)
Q Consensus       379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  429 (475)
                      ...++.+ +..|++++|.+..+.+...|...   ....+.+.+........
T Consensus         6 i~~il~~-~~~~~f~~a~~~i~~l~~~Gys~---~dIl~~l~~~vv~~~~i   52 (91)
T d1sxjd1           6 LIEIVEK-VKSGDFDEIKKYVNTFMKSGWSA---ASVVNQLHEYYITNDNF   52 (91)
T ss_dssp             HHHHHHH-HHSCCHHHHHHHHHHHHHTSCCC---TTHHHHHHHHHHHCSSS
T ss_pred             HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHhcCCC
Confidence            4455554 45677888888888888777643   34455555544444443


No 79 
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.59  E-value=46  Score=21.20  Aligned_cols=35  Identities=6%  Similarity=-0.115  Sum_probs=21.2

Q ss_pred             CCHHHHHHHHhhhCCCChHHHHHHHHHhhhCCCCC
Q 011905           57 LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYR   91 (475)
Q Consensus        57 ~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~   91 (475)
                      |+|..+..+++.|..++...|.....-.....||.
T Consensus         1 P~P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s   35 (95)
T d1sxjc1           1 PRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLA   35 (95)
T ss_dssp             CCHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCC
Confidence            45666666666665566666666665554445554


No 80 
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=36.44  E-value=39  Score=20.03  Aligned_cols=61  Identities=13%  Similarity=0.102  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011905          202 YVSMIKGFCNAGR--LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE  263 (475)
Q Consensus       202 ~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  263 (475)
                      |..++.-....++  .+++..+++.+.... .++...-..|+....+.-..++...+.+.|.+.
T Consensus         2 ~~~il~kl~~g~~Ls~ee~~~~~~~i~~g~-~~d~qiaafL~al~~kg~t~dEi~g~~~am~~~   64 (69)
T d1khda1           2 HQPILEKLFKSQSMTQEESHQLFAAIVRGE-LEDSQLAAALISMKMRGERPEEIAGAASALLAD   64 (69)
T ss_dssp             CHHHHHHHHTTCCCCHHHHHHHHHHHTTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            4444444443333  445555555555432 223444444444444444455555555555553


No 81 
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2,  NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.01  E-value=45  Score=20.65  Aligned_cols=39  Identities=13%  Similarity=-0.158  Sum_probs=24.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 011905          415 IHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVDK  453 (475)
Q Consensus       415 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~  453 (475)
                      .+..-...+.+.|++++|++..++...     ..++++.....+
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~~yl~eA~klt~s~~~l~S   53 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLS   53 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            344556677788888888877666543     244566655543


No 82 
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.80  E-value=51  Score=24.73  Aligned_cols=14  Identities=0%  Similarity=-0.081  Sum_probs=6.9

Q ss_pred             HhcCChhHHHHHHH
Q 011905          105 RIKQNPSIIIDVVE  118 (475)
Q Consensus       105 ~~~~~~~~a~~~~~  118 (475)
                      +..|+.+.+.+++.
T Consensus        11 a~~G~~~~v~~~l~   24 (223)
T d1uoha_          11 AYSGKLEELKESIL   24 (223)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHH
Confidence            44555555544443


No 83 
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.70  E-value=40  Score=25.08  Aligned_cols=62  Identities=13%  Similarity=0.043  Sum_probs=32.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHhccCCC
Q 011905          132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD--MIAADELMKGMGLIDL  195 (475)
Q Consensus       132 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~  195 (475)
                      ...++.-|...++.++|...++++.....  -......++......++  -+.+..++..+...|+
T Consensus        13 ~~~il~Ey~~~~D~~Ea~~~l~el~~p~~--~~~~V~~~i~~~le~~~~~re~~~~Ll~~L~~~~~   76 (193)
T d1ug3a1          13 SKAIIEEYLHLNDMKEAVQCVQELASPSL--LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH   76 (193)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHTTCCGGG--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCchh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCC
Confidence            44567777778888888888888753111  11112223333333332  2345556666665553


No 84 
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.21  E-value=60  Score=24.03  Aligned_cols=22  Identities=14%  Similarity=0.051  Sum_probs=14.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 011905          241 LDGICRLGSMERALELLGEMEK  262 (475)
Q Consensus       241 l~~~~~~g~~~~a~~~~~~~~~  262 (475)
                      +-.|.+.|.+++|.+++++...
T Consensus       120 V~VCmekg~Fk~A~eil~r~f~  141 (203)
T d1h6pa_         120 VIICIKNKEFEKASKILKKHMS  141 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHHHhcchHHHHHHHHHHhc
Confidence            4456677777777777766654


No 85 
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.15  E-value=46  Score=24.66  Aligned_cols=22  Identities=9%  Similarity=0.123  Sum_probs=12.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 011905          420 LLGLCRKNHSVEAAKLARFMLK  441 (475)
Q Consensus       420 i~~~~~~g~~~~A~~~~~~m~~  441 (475)
                      +..|.+.|.+++|.+++++...
T Consensus       120 V~VCmekg~Fk~A~eil~r~f~  141 (203)
T d1h6pa_         120 VIICIKNKEFEKASKILKKHMS  141 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHHHhcchHHHHHHHHHHhc
Confidence            3445566666666666655543


No 86 
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=25.17  E-value=38  Score=16.34  Aligned_cols=20  Identities=20%  Similarity=0.408  Sum_probs=9.2

Q ss_pred             CCCcCHHHHHHHHHHHHhcC
Q 011905          229 GCAANLVAYSALLDGICRLG  248 (475)
Q Consensus       229 g~~~~~~~~~~ll~~~~~~g  248 (475)
                      |...+...|..++..+-+.|
T Consensus        15 g~s~ns~iy~~vmes~kkeg   34 (36)
T d1u9pa1          15 GRSVNSEIYQRVMESFKKEG   34 (36)
T ss_dssp             TCCHHHHHHHHHHHHHHHTT
T ss_pred             CcchhHHHHHHHHHHHHHcc
Confidence            34444444444444444444


No 87 
>d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458 {Haemophilus influenzae [TaxId: 727]}
Probab=24.38  E-value=1.2e+02  Score=22.07  Aligned_cols=55  Identities=15%  Similarity=0.191  Sum_probs=34.3

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 011905          353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-----VLEGFCLYEDIEKIGF  407 (475)
Q Consensus       353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~  407 (475)
                      +..+.+.|+-.+.+|++.|-.|....-..++-+.-..|.     +..|...++.....|.
T Consensus        16 RgSD~dAaly~larml~~GeDp~~i~RRl~~~AsEDIGlAdp~al~~a~~~~~a~~~iG~   75 (184)
T d3bgea1          16 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA   75 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred             hcCCccHHHHHHHHHHHcCCChHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHhCC
Confidence            456778888777888877766655555555555555443     3355566666666663


Done!