BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011907
(475 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 345 bits (884), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 177/401 (44%), Positives = 247/401 (61%), Gaps = 18/401 (4%)
Query: 53 YKTKYHTQILDHFNYNPQSYQTFQQRYLINDTHWGGSKNNAPIFVYTGNEGDIEWFAQNT 112
Y Y Q +DHF +N + +TF QRYL+ D +W KN I YTGNEGDI WF NT
Sbjct: 3 YSVLYFQQKVDHFGFN--TVKTFNQRYLVADKYW--KKNGGSILFYTGNEGDIIWFCNNT 58
Query: 113 GFMYDVAPKFKALLVFIEHRYYGKSIPYGGNKEIAYKNASTTGYLSSTQALADYASLIID 172
GFM+DVA + KA+LVF EHRYYG+S+P+G N ++K++ +L+S QALAD+A LI
Sbjct: 59 GFMWDVAEELKAMLVFAEHRYYGESLPFGDN---SFKDSRHLNFLTSEQALADFAELIKH 115
Query: 173 LKKNLT-ATDSPVVVFGGSYGGMLAAWFRLKYPHVAIGALASSAPILNFDNIVSPYSFSN 231
LK+ + A + PV+ GGSYGGMLAAWFR+KYPH+ +GALA+SAPI F+++V F
Sbjct: 116 LKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMK 175
Query: 232 IITQDFRSVSENCYKVIKGSWKQIEETAKKPGGLEKLQKAFRICK---SEKNLAIESWLS 288
I+T DFR +C + I SW I + GL+ L A +C S+ ++ W+S
Sbjct: 176 IVTTDFRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWIS 235
Query: 289 TAFVYTAMTDYPTPSNFLNPLPAFPVKEMCKAIDDPKTGNDVFAK-LYGAASVYYNYSGT 347
+V AM DYP SNFL PLPA+P+K +C+ + +P + + + ++ A +VYYNYSG
Sbjct: 236 ETWVNLAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQ 295
Query: 348 AKCFDLNGDSDPH-GLSEWGWQACTEMIMLTGGDNKDSIFEESEEDYDARARYCKEAYGV 406
KC +++ + G W +QACTE++M + D +FE + + C + +GV
Sbjct: 296 VKCLNISETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGV 355
Query: 407 DPRPNWITTEFGGHKIGLVLKRFASNIIFFNGLRDPWSGGG 447
PRP+WITT +GG I +NI+F NG DPWSGGG
Sbjct: 356 RPRPSWITTMYGGKNIS-----SHTNIVFSNGELDPWSGGG 391
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 285 bits (729), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 160/409 (39%), Positives = 232/409 (56%), Gaps = 29/409 (7%)
Query: 53 YKTKYHTQILDHFNYNPQSYQTFQQRYLINDTHWGGSKNNAPIFVYTGNEGDIEWFAQNT 112
++ ++ Q LDHFN+ +TF QR+L++D W + PIF YTGNEGD+ FA N+
Sbjct: 8 FQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFW--VRGEGPIFFYTGNEGDVWAFANNS 65
Query: 113 GFMYDVAPKFKALLVFIEHRYYGKSIPYGGNKEIAYKNASTTGYLSSTQALADYASLIID 172
F+ ++A + ALLVF EHRYYGKS+P+G T L+ QALAD+A L+
Sbjct: 66 AFVAELAAERGALLVFAEHRYYGKSLPFGAQS----TQRGHTELLTVEQALADFAELLRA 121
Query: 173 LKKNLTATDSPVVVFGGSYGGMLAAWFRLKYPHVAIGALASSAPILNFDNIVSPYSFSNI 232
L+++L A D+P + FGGSYGGML+A+ R+KYPH+ GALA+SAP+L + F
Sbjct: 122 LRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRD 181
Query: 233 ITQDFRSVSENCYKVIKGSWKQIEETAKKPGGLEKLQKAFRICK---SEKNLA-IESWLS 288
+T DF S C + ++ +++QI++ + G + ++ F C+ EK+L + +
Sbjct: 182 VTADFEGQSPKCTQGVREAFRQIKDLFLQ-GAYDTVRWEFGTCQPLSDEKDLTQLFMFAR 240
Query: 289 TAFVYTAMTDYPTPSNFLNPLPAFPVKEMCKAIDDPKTGNDVFAKLYGAASVYYNYSGTA 348
AF AM DYP P++FL PLPA PVK C D + L A + YN SG+
Sbjct: 241 NAFTVLAMMDYPYPTDFLGPLPANPVKVGC---DRLLSEAQRITGLRALAGLVYNASGSE 297
Query: 349 KCFDL----NGDSDPHGLS------EWGWQACTEMIMLTGGDNKDSIFEESEEDYDARAR 398
C+D+ + +DP G W +QACTE+ + +N +F + + R R
Sbjct: 298 HCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQR 357
Query: 399 YCKEAYGVDPRPNWITTEFGGHKIGLVLKRFASNIIFFNGLRDPWSGGG 447
YC + +GV PRP+W+ T F G + R ASNIIF NG DPW+GGG
Sbjct: 358 YCLDTWGVWPRPDWLLTSFWGGDL-----RAASNIIFSNGNLDPWAGGG 401
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 277 bits (709), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 158/409 (38%), Positives = 228/409 (55%), Gaps = 29/409 (7%)
Query: 53 YKTKYHTQILDHFNYNPQSYQTFQQRYLINDTHWGGSKNNAPIFVYTGNEGDIEWFAQNT 112
++ ++ Q LDHFN+ +TF QR+L++D W + PIF YTGNEGD+ FA N+
Sbjct: 5 FQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFW--VRGEGPIFFYTGNEGDVWAFANNS 62
Query: 113 GFMYDVAPKFKALLVFIEHRYYGKSIPYGGNKEIAYKNASTTGYLSSTQALADYASLIID 172
F+ ++A + ALLVF EHRYYGKS+P+G T L+ QALAD+A L+
Sbjct: 63 AFVAELAAERGALLVFAEHRYYGKSLPFGAQS----TQRGHTELLTVEQALADFAELLRA 118
Query: 173 LKKNLTATDSPVVVFGGSYGGMLAAWFRLKYPHVAIGALASSAPILNFDNIVSPYSFSNI 232
L+++L A D+P + FGGSYGG L+A+ R KYPH+ GALA+SAP+L + F
Sbjct: 119 LRRDLGAQDAPAIAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVAGLGDSNQFFRD 178
Query: 233 ITQDFRSVSENCYKVIKGSWKQIEETAKKPGGLEKLQKAFRICK---SEKNLA-IESWLS 288
+T DF S C + ++ +++QI++ + G + ++ F C+ EK+L + +
Sbjct: 179 VTADFEGQSPKCTQGVREAFRQIKDLFLQ-GAYDTVRWEFGTCQPLSDEKDLTQLFXFAR 237
Query: 289 TAFVYTAMTDYPTPSNFLNPLPAFPVKEMCKAIDDPKTGNDVFAKLYGAASVYYNYSGTA 348
AF A DYP P++FL PLPA PVK C D + L A + YN SG+
Sbjct: 238 NAFTVLAXXDYPYPTDFLGPLPANPVKVGC---DRLLSEAQRITGLRALAGLVYNASGSE 294
Query: 349 KCFDL----NGDSDPHGLS------EWGWQACTEMIMLTGGDNKDSIFEESEEDYDARAR 398
C+D+ + +DP G W +QACTE+ + +N F + + R R
Sbjct: 295 HCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDXFPDLPFTDELRQR 354
Query: 399 YCKEAYGVDPRPNWITTEFGGHKIGLVLKRFASNIIFFNGLRDPWSGGG 447
YC + +GV PRP+W+ T F G + R ASNIIF NG DPW+GGG
Sbjct: 355 YCLDTWGVWPRPDWLLTSFWGGDL-----RAASNIIFSNGNLDPWAGGG 398
>pdb|1WCE|A Chain A, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|B Chain B, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|C Chain C, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|D Chain D, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|E Chain E, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|F Chain F, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|G Chain G, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|H Chain H, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|I Chain I, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|J Chain J, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|K Chain K, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|L Chain L, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|M Chain M, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
Length = 441
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 184 VVVFGGSYGGMLAAWFRLKYPHVAIGALASSAPILNFDNIVSPYSFSNIITQ 235
V + GG+Y G L + Y VA G++ + A + NF+ I +P N++T+
Sbjct: 335 VTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTE 386
>pdb|1WCD|J Chain J, Crystal Structure Of Ibdv T1 Virus-like Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
Length = 441
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 184 VVVFGGSYGGMLAAWFRLKYPHVAIGALASSAPILNFDNIVSPYSFSNIITQ 235
V + GG+Y G L + Y VA G++ + A + NF+ I +P N++T+
Sbjct: 335 VTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTE 386
>pdb|3FBM|A Chain A, D431n Mutant Vp2 Protein Of Infectious Bursal Disease
Virus; Derived T1 Particles
Length = 452
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 184 VVVFGGSYGGMLAAWFRLKYPHVAIGALASSAPILNFDNIVSPYSFSNIITQ 235
V + GG+Y G L + Y VA G++ + A + NF+ I +P N++T+
Sbjct: 335 VTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTE 386
>pdb|2DF7|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|B Chain B, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|C Chain C, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|D Chain D, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|E Chain E, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|F Chain F, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|G Chain G, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|H Chain H, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|I Chain I, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|J Chain J, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|K Chain K, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|L Chain L, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|M Chain M, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|N Chain N, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|O Chain O, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|P Chain P, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|Q Chain Q, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|R Chain R, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|S Chain S, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|T Chain T, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
Length = 458
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 184 VVVFGGSYGGMLAAWFRLKYPHVAIGALASSAPILNFDNIVSPYSFSNIITQ 235
V + GG+Y G L + Y VA G++ + A + NF+ I +P N++T+
Sbjct: 335 VTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTE 386
>pdb|2GSY|A Chain A, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|B Chain B, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|C Chain C, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|D Chain D, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|E Chain E, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|F Chain F, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|G Chain G, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|H Chain H, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|I Chain I, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|J Chain J, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|K Chain K, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|L Chain L, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|M Chain M, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|N Chain N, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|O Chain O, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|P Chain P, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|Q Chain Q, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|R Chain R, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|S Chain S, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|T Chain T, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
Length = 456
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 184 VVVFGGSYGGMLAAWFRLKYPHVAIGALASSAPILNFDNIVSPYSFSNIITQ 235
V + GG+Y G L + Y VA G++ + A + NF+ I +P N++T+
Sbjct: 335 VTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTE 386
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 222 NIVSPYSFSNII------TQDFRSVSENCYKVIKGSWKQIEETAKKPGGL 265
N++ P F N+I T F+S +ENC K IK + ++++E +K G+
Sbjct: 359 NVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGI 408
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 222 NIVSPYSFSNII------TQDFRSVSENCYKVIKGSWKQIEE 257
N++ P F N+I T F+S +ENC K IK + ++++E
Sbjct: 359 NVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKE 400
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 344 YSGTAKCFDLNGDSDPHGLSEWGWQACTEMIMLTGGDNKDSI 385
Y KC LN D P+ SE+G ++ +++ GG ++I
Sbjct: 48 YKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETI 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,756,115
Number of Sequences: 62578
Number of extensions: 661658
Number of successful extensions: 1700
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1671
Number of HSP's gapped (non-prelim): 21
length of query: 475
length of database: 14,973,337
effective HSP length: 102
effective length of query: 373
effective length of database: 8,590,381
effective search space: 3204212113
effective search space used: 3204212113
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)